Query 038699
Match_columns 237
No_of_seqs 232 out of 2656
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 03:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.7E-31 9.4E-36 238.3 19.1 214 2-218 471-754 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-31 3.8E-36 217.2 14.6 207 2-213 106-313 (313)
3 1ozn_A Reticulon 4 receptor; N 100.0 7.7E-29 2.6E-33 197.8 16.9 205 1-206 36-242 (285)
4 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-29 1.3E-33 202.2 13.5 196 2-199 55-254 (313)
5 3rgz_A Protein brassinosteroid 100.0 4E-28 1.4E-32 217.8 19.0 205 2-208 447-722 (768)
6 2o6q_A Variable lymphocyte rec 100.0 1.1E-26 3.8E-31 184.0 20.7 200 2-205 21-221 (270)
7 4fcg_A Uncharacterized protein 100.0 1.7E-27 6E-32 193.7 15.2 208 1-214 85-302 (328)
8 1ozn_A Reticulon 4 receptor; N 100.0 8.6E-28 2.9E-32 191.7 13.0 207 1-208 60-267 (285)
9 2z62_A TOLL-like receptor 4, v 99.9 6.4E-27 2.2E-31 185.9 16.4 204 1-206 32-241 (276)
10 3zyj_A Leucine-rich repeat-con 99.9 1.3E-26 4.3E-31 195.7 18.2 201 2-205 69-295 (440)
11 1p9a_G Platelet glycoprotein I 99.9 4.5E-26 1.6E-30 182.3 19.8 196 2-204 15-210 (290)
12 3zyi_A Leucine-rich repeat-con 99.9 2.2E-26 7.4E-31 195.0 18.3 201 2-205 80-306 (452)
13 2o6q_A Variable lymphocyte rec 99.9 8.8E-26 3E-30 178.8 19.5 183 1-184 41-223 (270)
14 4fcg_A Uncharacterized protein 99.9 1.4E-26 4.8E-31 188.4 14.9 194 1-199 108-311 (328)
15 2z66_A Variable lymphocyte rec 99.9 2.2E-26 7.7E-31 185.3 14.6 202 1-204 32-263 (306)
16 3v47_A TOLL-like receptor 5B a 99.9 5E-26 1.7E-30 192.6 17.0 120 86-206 292-412 (455)
17 2z66_A Variable lymphocyte rec 99.9 6.5E-26 2.2E-30 182.6 16.5 193 2-199 12-209 (306)
18 3m19_A Variable lymphocyte rec 99.9 8.2E-26 2.8E-30 177.2 16.2 179 2-184 19-197 (251)
19 2xwt_C Thyrotropin receptor; s 99.9 4.3E-26 1.5E-30 177.4 13.2 194 1-200 35-237 (239)
20 1xku_A Decorin; proteoglycan, 99.9 8.6E-25 2.9E-29 177.8 21.4 206 1-213 56-285 (330)
21 3zyi_A Leucine-rich repeat-con 99.9 2.4E-25 8.1E-30 188.6 18.3 200 2-206 59-282 (452)
22 2ft3_A Biglycan; proteoglycan, 99.9 8.5E-25 2.9E-29 178.0 20.8 195 1-199 58-274 (332)
23 3rfs_A Internalin B, repeat mo 99.9 6.5E-25 2.2E-29 174.0 19.3 194 2-207 46-239 (272)
24 3v47_A TOLL-like receptor 5B a 99.9 2.6E-25 8.9E-30 188.2 18.0 110 96-207 278-388 (455)
25 3zyj_A Leucine-rich repeat-con 99.9 3.5E-25 1.2E-29 186.9 18.6 194 2-199 48-265 (440)
26 3vq2_A TLR4, TOLL-like recepto 99.9 5.3E-26 1.8E-30 198.9 13.7 203 2-206 355-562 (606)
27 3o6n_A APL1; leucine-rich repe 99.9 3.9E-25 1.3E-29 183.8 16.3 105 2-106 74-178 (390)
28 2z80_A TOLL-like receptor 2, v 99.9 4E-26 1.4E-30 187.4 9.4 204 1-205 56-317 (353)
29 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-24 5.9E-29 176.2 18.6 202 1-207 82-312 (332)
30 3t6q_A CD180 antigen; protein- 99.9 3.1E-25 1.1E-29 194.1 15.0 202 2-205 355-563 (606)
31 1wwl_A Monocyte differentiatio 99.9 6.4E-26 2.2E-30 183.2 9.9 192 2-199 100-306 (312)
32 2id5_A Lingo-1, leucine rich r 99.9 3.1E-25 1.1E-29 189.0 14.5 178 1-179 36-213 (477)
33 1xku_A Decorin; proteoglycan, 99.9 3.2E-24 1.1E-28 174.4 19.1 202 1-207 80-311 (330)
34 3oja_A Leucine-rich immune mol 99.9 2.3E-25 7.8E-30 190.3 12.5 200 1-206 38-254 (487)
35 2id5_A Lingo-1, leucine rich r 99.9 4.7E-25 1.6E-29 187.8 14.3 203 1-204 108-335 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 8.2E-25 2.8E-29 181.8 15.2 198 1-199 49-305 (390)
37 3oja_B Anopheles plasmodium-re 99.9 9.1E-25 3.1E-29 191.0 16.1 105 2-106 80-184 (597)
38 3t6q_A CD180 antigen; protein- 99.9 1.9E-24 6.5E-29 189.1 18.2 154 1-155 37-192 (606)
39 1ziw_A TOLL-like receptor 3; i 99.9 1E-24 3.6E-29 193.1 16.0 204 2-206 386-626 (680)
40 2z80_A TOLL-like receptor 2, v 99.9 2.8E-25 9.6E-30 182.3 11.0 174 2-179 36-211 (353)
41 1p9a_G Platelet glycoprotein I 99.9 3.4E-24 1.2E-28 171.4 16.9 176 1-181 35-210 (290)
42 3oja_B Anopheles plasmodium-re 99.9 1.4E-24 4.9E-29 189.8 15.3 199 1-200 55-312 (597)
43 2z62_A TOLL-like receptor 4, v 99.9 2.3E-24 7.7E-29 171.1 15.0 183 1-185 56-243 (276)
44 3rfs_A Internalin B, repeat mo 99.9 5.3E-24 1.8E-28 168.7 16.5 196 4-206 26-222 (272)
45 3o53_A Protein LRIM1, AGAP0063 99.9 6.6E-25 2.3E-29 177.7 11.5 199 1-205 38-253 (317)
46 3m19_A Variable lymphocyte rec 99.9 1.6E-23 5.3E-28 164.1 17.9 180 21-204 14-194 (251)
47 4eco_A Uncharacterized protein 99.9 4.2E-25 1.4E-29 194.4 9.3 140 37-179 198-366 (636)
48 1ziw_A TOLL-like receptor 3; i 99.9 3E-23 1E-27 183.8 18.9 198 1-199 357-594 (680)
49 4glp_A Monocyte differentiatio 99.9 3.3E-24 1.1E-28 173.1 11.3 193 2-200 96-305 (310)
50 3j0a_A TOLL-like receptor 5; m 99.9 9.2E-24 3.2E-28 191.3 15.4 199 2-205 295-563 (844)
51 2z63_A TOLL-like receptor 4, v 99.9 1.6E-23 5.5E-28 181.8 15.7 187 18-206 344-535 (570)
52 4ecn_A Leucine-rich repeat pro 99.9 4.5E-24 1.5E-28 192.4 11.8 159 37-200 440-630 (876)
53 1wwl_A Monocyte differentiatio 99.9 1.7E-24 6E-29 174.8 7.9 199 2-205 68-289 (312)
54 2z81_A CD282 antigen, TOLL-lik 99.9 8.5E-24 2.9E-28 182.9 11.6 197 1-199 30-233 (549)
55 4eco_A Uncharacterized protein 99.9 9E-23 3.1E-27 179.6 17.9 197 2-205 382-603 (636)
56 1h6u_A Internalin H; cell adhe 99.9 1.2E-22 4E-27 163.8 16.7 185 1-201 45-229 (308)
57 3vq2_A TLR4, TOLL-like recepto 99.9 4.9E-23 1.7E-27 180.1 15.0 195 2-200 16-215 (606)
58 2z7x_B TOLL-like receptor 1, v 99.9 6E-23 2E-27 176.6 14.3 198 2-205 252-484 (520)
59 4ecn_A Leucine-rich repeat pro 99.9 2.4E-23 8.3E-28 187.6 12.0 193 1-199 452-683 (876)
60 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-22 4.1E-27 176.4 15.5 159 42-204 350-512 (562)
61 3j0a_A TOLL-like receptor 5; m 99.9 2.2E-22 7.4E-27 182.3 17.2 178 1-179 28-217 (844)
62 4fmz_A Internalin; leucine ric 99.9 2.5E-22 8.5E-27 164.2 16.1 185 2-200 137-322 (347)
63 2z63_A TOLL-like receptor 4, v 99.9 6.3E-23 2.2E-27 178.0 13.2 184 1-186 351-538 (570)
64 2o6s_A Variable lymphocyte rec 99.9 3.6E-22 1.2E-26 152.0 14.3 172 2-184 12-183 (208)
65 2z7x_B TOLL-like receptor 1, v 99.9 2E-22 6.9E-27 173.3 14.4 102 2-106 26-128 (520)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.6E-22 1.2E-26 173.4 15.0 104 1-107 56-160 (562)
67 2v9t_B SLIT homolog 2 protein 99.9 2.7E-22 9.4E-27 154.1 12.4 153 24-180 14-166 (220)
68 2v70_A SLIT-2, SLIT homolog 2 99.9 2.2E-22 7.4E-27 154.6 11.8 156 24-183 14-170 (220)
69 3o53_A Protein LRIM1, AGAP0063 99.9 6.9E-23 2.4E-27 165.8 9.1 207 3-215 16-239 (317)
70 3oja_A Leucine-rich immune mol 99.9 2.2E-22 7.6E-27 171.8 10.9 191 19-215 32-239 (487)
71 2xot_A Amphoterin-induced prot 99.9 6E-22 2E-26 163.1 12.5 175 2-180 23-203 (361)
72 1h6u_A Internalin H; cell adhe 99.9 2.7E-21 9.1E-26 155.9 15.3 165 1-180 67-231 (308)
73 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-22 7.9E-27 173.9 9.4 197 2-204 10-210 (549)
74 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-21 7.1E-26 170.1 15.3 190 6-199 40-234 (635)
75 1o6v_A Internalin A; bacterial 99.9 4E-21 1.4E-25 163.2 16.5 184 2-201 204-387 (466)
76 2v9t_B SLIT homolog 2 protein 99.9 4.1E-21 1.4E-25 147.5 14.7 150 2-155 16-165 (220)
77 1o6v_A Internalin A; bacterial 99.9 8.3E-21 2.8E-25 161.3 18.0 195 2-214 182-376 (466)
78 2xwt_C Thyrotropin receptor; s 99.9 1.3E-21 4.5E-26 152.0 11.6 170 1-177 59-237 (239)
79 2o6s_A Variable lymphocyte rec 99.9 1.5E-20 5.2E-25 143.0 16.9 173 24-207 10-182 (208)
80 4fmz_A Internalin; leucine ric 99.9 1.8E-20 6.2E-25 153.1 18.0 185 2-199 71-275 (347)
81 1h6t_A Internalin B; cell adhe 99.9 8.1E-21 2.8E-25 151.9 15.0 163 2-179 51-213 (291)
82 3e6j_A Variable lymphocyte rec 99.9 2E-20 6.7E-25 144.6 16.3 157 22-183 20-176 (229)
83 4glp_A Monocyte differentiatio 99.9 4.6E-21 1.6E-25 154.6 12.8 182 20-205 90-287 (310)
84 1h6t_A Internalin B; cell adhe 99.9 4.7E-21 1.6E-25 153.2 12.5 171 17-201 42-212 (291)
85 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-20 4.3E-25 165.1 16.3 184 20-205 396-583 (635)
86 2xot_A Amphoterin-induced prot 99.9 6.3E-21 2.2E-25 157.0 13.1 178 23-204 20-204 (361)
87 2ast_B S-phase kinase-associat 99.9 4.1E-22 1.4E-26 162.2 5.9 196 2-199 75-282 (336)
88 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-20 7.5E-25 143.4 14.7 152 1-156 15-167 (220)
89 4ezg_A Putative uncharacterize 99.8 9.2E-21 3.1E-25 143.1 11.6 153 18-179 41-194 (197)
90 3bz5_A Internalin-J, INLJ; leu 99.8 1.4E-19 4.7E-24 153.4 19.9 178 2-199 47-243 (457)
91 3bz5_A Internalin-J, INLJ; leu 99.8 1.4E-19 4.9E-24 153.3 19.7 172 8-199 29-222 (457)
92 3e6j_A Variable lymphocyte rec 99.8 7.8E-20 2.7E-24 141.2 15.9 151 2-157 24-174 (229)
93 4ay9_X Follicle-stimulating ho 99.8 3.1E-20 1.1E-24 152.2 13.9 176 2-179 35-215 (350)
94 1m9s_A Internalin B; cell inva 99.8 9.8E-20 3.4E-24 158.9 16.4 166 1-181 47-212 (605)
95 2ast_B S-phase kinase-associat 99.8 1.6E-21 5.3E-26 158.7 4.4 203 1-208 97-311 (336)
96 1xeu_A Internalin C; cellular 99.8 3.2E-20 1.1E-24 146.3 11.4 164 2-181 24-187 (263)
97 1m9s_A Internalin B; cell inva 99.8 2.8E-20 9.5E-25 162.3 11.8 181 4-200 28-208 (605)
98 3goz_A Leucine-rich repeat-con 99.8 6.9E-22 2.4E-26 162.7 0.9 197 2-199 27-263 (362)
99 2ca6_A RAN GTPase-activating p 99.8 7.4E-22 2.5E-26 163.8 0.4 130 69-199 159-313 (386)
100 3goz_A Leucine-rich repeat-con 99.8 1.9E-21 6.5E-26 160.1 2.7 198 2-200 3-236 (362)
101 1w8a_A SLIT protein; signaling 99.8 6.8E-20 2.3E-24 137.8 10.5 112 70-182 30-142 (192)
102 4ezg_A Putative uncharacterize 99.8 1.6E-19 5.6E-24 136.2 12.4 147 1-156 48-195 (197)
103 3cvr_A Invasion plasmid antige 99.8 5.3E-19 1.8E-23 152.9 16.6 175 1-203 63-244 (571)
104 2ca6_A RAN GTPase-activating p 99.8 1.7E-21 6E-26 161.6 0.2 199 1-200 36-285 (386)
105 1xeu_A Internalin C; cellular 99.8 6E-19 2E-23 139.0 10.4 170 19-203 17-186 (263)
106 1w8a_A SLIT protein; signaling 99.8 9.2E-19 3.2E-23 131.5 10.6 129 24-156 11-140 (192)
107 3cvr_A Invasion plasmid antige 99.8 1.9E-18 6.7E-23 149.4 13.7 158 1-184 84-248 (571)
108 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-17 4.3E-22 145.9 17.7 75 117-200 221-295 (622)
109 2wfh_A SLIT homolog 2 protein 99.8 2.6E-18 8.8E-23 129.2 10.3 128 48-180 13-140 (193)
110 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-17 8.9E-22 143.9 18.0 51 142-199 221-271 (622)
111 2ell_A Acidic leucine-rich nuc 99.8 4.3E-18 1.5E-22 125.0 11.1 132 45-179 24-160 (168)
112 1jl5_A Outer protein YOPM; leu 99.8 3.9E-17 1.3E-21 138.2 18.5 119 22-155 132-250 (454)
113 4ay9_X Follicle-stimulating ho 99.8 5.3E-18 1.8E-22 138.9 12.8 198 2-206 14-218 (350)
114 2ell_A Acidic leucine-rich nuc 99.8 3.2E-18 1.1E-22 125.7 10.3 137 20-160 23-164 (168)
115 1jl5_A Outer protein YOPM; leu 99.8 3.2E-17 1.1E-21 138.7 17.8 136 1-155 135-270 (454)
116 1dce_A Protein (RAB geranylger 99.7 5.6E-21 1.9E-25 165.7 -7.6 160 18-184 346-551 (567)
117 1z7x_W Ribonuclease inhibitor; 99.7 3.1E-20 1E-24 157.2 -3.7 81 2-82 147-240 (461)
118 1z7x_W Ribonuclease inhibitor; 99.7 1.4E-19 4.9E-24 153.1 -0.6 197 2-199 175-408 (461)
119 2je0_A Acidic leucine-rich nuc 99.7 1E-17 3.5E-22 120.6 9.1 108 21-131 17-126 (149)
120 2je0_A Acidic leucine-rich nuc 99.7 8.7E-18 3E-22 120.9 7.9 129 44-175 16-149 (149)
121 2o6r_A Variable lymphocyte rec 99.7 7.4E-17 2.5E-21 119.4 12.8 133 48-184 10-142 (177)
122 4b8c_D Glucose-repressible alc 99.7 1.2E-18 4.1E-23 155.2 3.3 119 38-161 217-335 (727)
123 2wfh_A SLIT homolog 2 protein 99.7 9.1E-17 3.1E-21 120.7 13.0 127 24-155 13-139 (193)
124 4b8c_D Glucose-repressible alc 99.7 3.6E-18 1.2E-22 152.2 5.5 154 12-176 215-369 (727)
125 2o6r_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 115.9 13.2 131 23-157 9-139 (177)
126 1a9n_A U2A', U2A'; complex (nu 99.7 1.6E-16 5.4E-21 117.6 8.6 110 17-131 15-126 (176)
127 3sb4_A Hypothetical leucine ri 99.7 2.1E-16 7.2E-21 128.3 9.8 179 1-183 53-314 (329)
128 1a9n_A U2A', U2A'; complex (nu 99.7 2.3E-16 8E-21 116.7 9.2 133 40-179 14-153 (176)
129 1dce_A Protein (RAB geranylger 99.7 6.1E-19 2.1E-23 152.9 -6.7 159 42-208 346-551 (567)
130 1ds9_A Outer arm dynein; leuci 99.6 1.3E-18 4.5E-23 131.3 -7.9 152 20-179 17-185 (198)
131 3sb4_A Hypothetical leucine ri 99.6 6.9E-15 2.4E-19 119.3 10.7 193 20-216 48-324 (329)
132 1ds9_A Outer arm dynein; leuci 99.6 6.2E-18 2.1E-22 127.6 -7.2 147 2-156 23-186 (198)
133 3g39_A Variable lymphocyte rec 99.6 2E-14 6.9E-19 105.7 11.4 102 2-106 14-115 (170)
134 3g39_A Variable lymphocyte rec 99.6 1.6E-14 5.5E-19 106.2 10.8 109 72-184 12-120 (170)
135 2r9u_A Variable lymphocyte rec 99.6 3.1E-14 1.1E-18 105.1 11.4 104 24-131 15-118 (174)
136 2r9u_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 104.0 11.1 108 72-183 15-122 (174)
137 3un9_A NLR family member X1; l 99.5 1.2E-15 3.9E-20 125.9 -1.0 158 21-179 72-252 (372)
138 3un9_A NLR family member X1; l 99.5 1.1E-15 3.9E-20 125.9 -4.2 178 1-179 76-283 (372)
139 4fdw_A Leucine rich hypothetic 99.4 3.6E-12 1.2E-16 106.0 16.3 183 9-199 168-355 (401)
140 4fdw_A Leucine rich hypothetic 99.4 4.1E-12 1.4E-16 105.7 15.0 172 2-182 185-361 (401)
141 2ifg_A High affinity nerve gro 99.4 1.3E-12 4.6E-17 106.5 11.6 102 2-106 13-116 (347)
142 3ogk_B Coronatine-insensitive 99.4 1.1E-14 3.6E-19 126.9 -2.3 129 19-149 110-250 (592)
143 2ifg_A High affinity nerve gro 99.4 3.2E-12 1.1E-16 104.2 10.8 104 48-155 11-116 (347)
144 3ogk_B Coronatine-insensitive 99.4 1.2E-13 4.3E-18 120.1 1.9 58 19-77 190-251 (592)
145 2p1m_B Transport inhibitor res 99.3 1.5E-14 5E-19 126.0 -6.0 132 68-201 371-518 (594)
146 2p1m_B Transport inhibitor res 99.3 8.8E-14 3E-18 121.1 -2.8 109 19-128 103-221 (594)
147 2ra8_A Uncharacterized protein 99.0 1E-10 3.6E-15 95.8 4.3 159 17-179 135-320 (362)
148 2ra8_A Uncharacterized protein 99.0 5.4E-10 1.8E-14 91.5 5.4 159 14-177 165-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.8 1.2E-09 4E-14 81.2 2.1 119 40-179 31-164 (185)
150 1io0_A Tropomodulin; LRR prote 98.8 1.6E-09 5.3E-14 80.5 1.2 115 15-130 30-163 (185)
151 4fs7_A Uncharacterized protein 98.6 2.5E-07 8.7E-12 76.5 11.5 138 9-152 59-218 (394)
152 4gt6_A Cell surface protein; l 98.6 1.3E-06 4.3E-11 72.3 14.5 121 88-217 260-382 (394)
153 4h09_A Hypothetical leucine ri 98.6 8.3E-07 2.8E-11 72.9 12.3 155 16-176 189-343 (379)
154 3rw6_A Nuclear RNA export fact 98.5 1.3E-08 4.3E-13 79.6 1.0 104 17-122 137-256 (267)
155 4fs7_A Uncharacterized protein 98.5 1.2E-06 4.3E-11 72.4 12.5 158 9-176 196-353 (394)
156 3e4g_A ATP synthase subunit S, 98.5 5.4E-08 1.9E-12 71.0 3.8 84 21-104 61-150 (176)
157 3rw6_A Nuclear RNA export fact 98.5 4E-09 1.4E-13 82.5 -3.0 97 50-149 148-258 (267)
158 4gt6_A Cell surface protein; l 98.4 8.4E-07 2.9E-11 73.4 9.3 149 21-178 242-390 (394)
159 4h09_A Hypothetical leucine ri 98.4 3E-06 1E-10 69.5 12.1 185 8-199 145-343 (379)
160 3e4g_A ATP synthase subunit S, 98.4 9.8E-08 3.4E-12 69.7 1.9 36 69-104 61-96 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 1.2E-05 4.2E-10 59.6 2.7 88 90-178 67-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 2E-05 6.7E-10 58.5 2.9 112 42-154 38-169 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00073 2.5E-08 46.6 6.1 56 25-82 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.9 0.0026 8.8E-08 43.8 6.3 56 49-106 12-68 (130)
165 2lz0_A Uncharacterized protein 91.6 0.65 2.2E-05 30.0 6.3 49 6-55 5-53 (100)
166 2lz0_A Uncharacterized protein 79.8 3 0.0001 26.8 4.5 48 31-79 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.7e-31 Score=238.29 Aligned_cols=214 Identities=38% Similarity=0.626 Sum_probs=183.0
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|++++..|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 67778888877787788888888888888888877788888888888888888888878888888888888888888877
Q ss_pred cCcccccc----------------------------------------------------------------------cC
Q 038699 82 SGPIPNQI----------------------------------------------------------------------GE 91 (237)
Q Consensus 82 ~~~~~~~~----------------------------------------------------------------------~~ 91 (237)
.+.+|..+ ..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 65555432 23
Q ss_pred CCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEE
Q 038699 92 LRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAV 171 (237)
Q Consensus 92 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 171 (237)
+++|+.|++++|.+++..|..++.+++|+.| ++++|.+++..|..+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L-~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL-NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEE-ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEE-eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 4678889999999998999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCCCCccC
Q 038699 172 NLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNALSTD 218 (237)
Q Consensus 172 ~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~~~~~~ 218 (237)
++++|+++|.+|....+..+....+.+|+.+||.+. ..|.....+
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l--~~C~~~~~~ 754 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL--PRCDPSNAD 754 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS--CCCCSCC--
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC--cCCCCCccC
Confidence 999999999999999999999999999999999874 478765333
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.1e-31 Score=217.17 Aligned_cols=207 Identities=34% Similarity=0.586 Sum_probs=138.4
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCC-CCCEEEccCCc
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLL-NLDSLDLSMNR 80 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 80 (237)
|++++|++++..|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..++ +|++|++++|.
T Consensus 106 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred EECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 44444444444444444445555555555554444444444555555555555555444444444444 45555555555
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
+.+..|..+..++ |++|++++|.+.+..+..+..+++|+.| ++++|.+.+..+. +..+++|++|++++|.+++..|.
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI-HLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE-ECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE-ECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh
Confidence 5444444454444 5555555555555566667777777777 7777777644444 67788899999999999888899
Q ss_pred cccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCC
Q 038699 161 SLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCN 213 (237)
Q Consensus 161 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~ 213 (237)
.+..+++|++|++++|++++.+|....++++..+++.+|+.+||.+. ..|+
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~--~~C~ 313 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL--PACT 313 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS--SCCC
T ss_pred HHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCC--CCCC
Confidence 99999999999999999999999988899999999999999999764 3574
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=7.7e-29 Score=197.80 Aligned_cols=205 Identities=24% Similarity=0.219 Sum_probs=184.5
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCc-ccccCcccccCCCCCCEEEccCC
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNN-ISGQIPEEIGGLLNLDSLDLSMN 79 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 79 (237)
+|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. ++...+..+..+++|++|++++|
T Consensus 36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence 37899999998888889999999999999999997778899999999999999997 87666888999999999999999
Q ss_pred cCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccC
Q 038699 80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP 159 (237)
Q Consensus 80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 159 (237)
.+.+..+..+..+++|++|++++|.+....+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++..|
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL-FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE-ECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence 9997778889999999999999999987777779999999999 999999997777789999999999999999998889
Q ss_pred ccccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhccCCcccccC
Q 038699 160 ASLSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFTNNKDLCGKV 206 (237)
Q Consensus 160 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~~n~~l~~~~ 206 (237)
..+..+++|++|++++|++++..+. ...++.++.+++.+|+..|...
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 9999999999999999999976554 4667889999999999887543
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=3.9e-29 Score=202.20 Aligned_cols=196 Identities=31% Similarity=0.461 Sum_probs=124.6
Q ss_pred EEecCCcCCC--CCCcccCCCCCCcEEEccC-CcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccC
Q 038699 2 LGLAGNSIGG--KIPAEIGSLSQLVELHLSS-NQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSM 78 (237)
Q Consensus 2 L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 78 (237)
|+|++|++++ .+|..|..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 134 (313)
T 1ogq_A 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134 (313)
T ss_dssp EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence 6777777777 6777777777777777774 777766777777777777777777777766777777777777777777
Q ss_pred CcCcCcccccccCCCCCCEEEccCCcccccCCccccCcc-CccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCc
Q 038699 79 NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV-GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGE 157 (237)
Q Consensus 79 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 157 (237)
|.+.+.+|..+..+++|++|++++|.+++..|..+..++ +|+.| ++++|.+.+..+..+..+. |+.|++++|.+++.
T Consensus 135 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L-~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM-TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212 (313)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE-ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC
T ss_pred CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE-ECcCCeeeccCChHHhCCc-ccEEECcCCcccCc
Confidence 777766666777777777777777777666666666665 66666 6666666655555555544 55555555555544
Q ss_pred cCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 158 IPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
.+..+..+++|++|++++|++++.++....+++++.+++.+|
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC
Confidence 444444444444444444444433333333333444444333
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=4e-28 Score=217.82 Aligned_cols=205 Identities=40% Similarity=0.609 Sum_probs=165.3
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.+|..++.+++|++|++++|.+
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 56777777777777777777777777777777777777777777788888888777777777777788888888888888
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccc------------------------------------------------
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQI------------------------------------------------ 113 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------------------------------------------------ 113 (237)
.+.+|..+..+++|+.|++++|.+.+..|..+
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 77777778888888888888887765555432
Q ss_pred ----------------------cCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEE
Q 038699 114 ----------------------GNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAV 171 (237)
Q Consensus 114 ----------------------~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 171 (237)
..+++|+.| ++++|++++..|..+..++.|+.|++++|.+++.+|..++.+++|+.|
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L-dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFL-DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEE-ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cccccccccccceecccCchhhhccccccEE-ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 234567778 889999988899999999999999999999999999999999999999
Q ss_pred EcCCCcCcCCCCCC-CccCCCccchhccCCcccccCCC
Q 038699 172 NLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKVQG 208 (237)
Q Consensus 172 ~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~~~ 208 (237)
|+++|++++.+|.. ..+..++.+++++| .+.|.+|.
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N-~l~g~iP~ 722 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNN-NLSGPIPE 722 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSS-EEEEECCS
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCC-cccccCCC
Confidence 99999999888865 56788999999988 58888875
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-26 Score=183.97 Aligned_cols=200 Identities=25% Similarity=0.273 Sum_probs=171.8
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
+++++++++. +|..+. +++++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+
T Consensus 21 l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 21 VDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 7888899985 454443 6799999999999977777899999999999999999866666678899999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
.+..+..+..+++|++|++++|.++...+..+..+++|+.| ++++|.++...+..|..+++|+.|++++|.+++..+..
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 176 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL-SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE-ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH
Confidence 86666778899999999999999987777788999999999 99999998777777889999999999999999777777
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhccCCccccc
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~~n~~l~~~ 205 (237)
|..+++|++|++++|++++..+. ...++.++.+++.+|++.|..
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 88999999999999999965554 345788999999999987764
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.7e-27 Score=193.72 Aligned_cols=208 Identities=20% Similarity=0.282 Sum_probs=181.1
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
.|+|++|+++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.
T Consensus 85 ~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 85 ALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp EEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET
T ss_pred EEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC
Confidence 3899999998 66777888999999999999999 88888999999999999999999 788899999999999999988
Q ss_pred CcCcccccccC---------CCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcC
Q 038699 81 LSGPIPNQIGE---------LRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSH 151 (237)
Q Consensus 81 i~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 151 (237)
+.+.+|..+.. +++|++|++++|.++ .+|..+..+++|+.| ++++|.+. ..+..+..+++|+.|++++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L-~L~~N~l~-~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL-KIRNSPLS-ALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE-EEESSCCC-CCCGGGGGCTTCCEEECTT
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE-EccCCCCC-cCchhhccCCCCCEEECcC
Confidence 87788876654 999999999999998 778889999999999 99999998 5666789999999999999
Q ss_pred CcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccCCCCCCCCC
Q 038699 152 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKVQGLRPCNA 214 (237)
Q Consensus 152 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~~~~~~C~~ 214 (237)
|.+.+..|..+..+++|++|++++|.+.+.+|.. ..++.++.+++.+|+.....|..+..+..
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 9998899999999999999999999998888854 56788999999998655544444444443
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.6e-28 Score=191.75 Aligned_cols=207 Identities=26% Similarity=0.228 Sum_probs=179.7
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCc-CCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQ-LSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN 79 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 79 (237)
+|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 60 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence 48999999999889999999999999999997 77666888999999999999999999777888999999999999999
Q ss_pred cCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccC
Q 038699 80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP 159 (237)
Q Consensus 80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 159 (237)
.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.| ++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL-LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE-ECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 9996666778999999999999999987777779999999999 999999998889999999999999999999997666
Q ss_pred ccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCC
Q 038699 160 ASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQG 208 (237)
Q Consensus 160 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~ 208 (237)
..+..+++|++|++++|++.+..+.......++.+....+...|..|..
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred HHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH
Confidence 7799999999999999999865554333333444555566666766553
No 9
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=6.4e-27 Score=185.86 Aligned_cols=204 Identities=26% Similarity=0.256 Sum_probs=177.1
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC
Confidence 38999999998888889999999999999999997777789999999999999999997777889999999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCccccc-CCccccCccCccccccCcCcccccccChhhcCCCCCC----eEeCcCCcCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGT-IPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQ----SLNLSHNNLS 155 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n~l~ 155 (237)
+.+..+..+..+++|++|++++|.+.+. .|..+..+++|+.| ++++|.+++..+..+..+.+|+ .|++++|.++
T Consensus 112 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL-DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE-ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE-ECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence 9866666789999999999999999864 58899999999999 9999999977777777777777 8999999998
Q ss_pred CccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccC
Q 038699 156 GEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKV 206 (237)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~ 206 (237)
+..+..+ ...+|++|++++|++++..+.. ..++.++.+++.+|+..|..+
T Consensus 191 ~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 191 FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 5555544 4458999999999999666554 568889999999999888653
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=195.74 Aligned_cols=201 Identities=27% Similarity=0.264 Sum_probs=150.7
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|+|++|+++...+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+
T Consensus 69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 67777777777767777777777777777777765666677777777777777777755455666677777777777666
Q ss_pred cCcccc-------------------------cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699 82 SGPIPN-------------------------QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136 (237)
Q Consensus 82 ~~~~~~-------------------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~ 136 (237)
....+. .+..+++|++|++++|.++ .+| .+..+++|+.| ++++|.+++..+.
T Consensus 149 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L-~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDEL-DLSGNHLSAIRPG 225 (440)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEE-ECTTSCCCEECTT
T ss_pred cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEE-ECCCCccCccChh
Confidence 533332 3445566666666666665 333 36677788888 8888888877788
Q ss_pred hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCccccc
Q 038699 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~ 205 (237)
.|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+.. ..++.++.+++.+|++.|..
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 8999999999999999999888888999999999999999999666554 45788999999999988854
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=4.5e-26 Score=182.30 Aligned_cols=196 Identities=26% Similarity=0.238 Sum_probs=171.9
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
+++++++++.+ |..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++. +.. ..+++|++|++++|.+
T Consensus 15 l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 15 VNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQL 89 (290)
T ss_dssp EECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCC
T ss_pred EECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcC
Confidence 78889999854 44443 6899999999999988888899999999999999999854 332 7899999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
. .+|..+..+++|++|++++|.+++..+..+..+++|+.| ++++|+++...+..|..+++|+.|++++|.++...+..
T Consensus 90 ~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 167 (290)
T 1p9a_G 90 Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL-YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167 (290)
T ss_dssp S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE-ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT
T ss_pred C-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE-ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHH
Confidence 8 678888999999999999999997777889999999999 99999999787888889999999999999999766677
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccc
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCG 204 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~ 204 (237)
+..+++|++|++++|+++...+.......+..+.+.+|++.|.
T Consensus 168 ~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 8889999999999999996666666677899999999999884
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.2e-26 Score=194.96 Aligned_cols=201 Identities=25% Similarity=0.242 Sum_probs=156.9
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|+|++|++++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence 77888888877777788888888888888888866667777888888888888887765556677777888888877777
Q ss_pred cCccccc-------------------------ccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699 82 SGPIPNQ-------------------------IGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136 (237)
Q Consensus 82 ~~~~~~~-------------------------~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~ 136 (237)
....+.. +..+++|++|++++|.+.+. | .+..+++|+.| ++++|.+++..+.
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L-~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEEL-EMSGNHFPEIRPG 236 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEE-ECTTSCCSEECGG
T ss_pred ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEE-ECcCCcCcccCcc
Confidence 6433333 44556666666666666532 3 46677788888 8888888877788
Q ss_pred hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCccccc
Q 038699 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~ 205 (237)
.|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+.. ..+++++.+++.+|++.|..
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 8999999999999999999888888999999999999999999666554 45788999999999987753
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=8.8e-26 Score=178.83 Aligned_cols=183 Identities=25% Similarity=0.272 Sum_probs=165.9
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
.|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120 (270)
T ss_dssp EEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC
T ss_pred EEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc
Confidence 38999999998888899999999999999999997667778899999999999999997777788999999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
+++..+..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.++...+..|..+++|+.|++++|.+++..+.
T Consensus 121 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL-RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee-EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 997777788999999999999999997767778999999999 9999999977778899999999999999999977777
Q ss_pred cccCCCCCCEEEcCCCcCcCCCCC
Q 038699 161 SLSSMLSLVAVNLSYNNLEGPLPD 184 (237)
Q Consensus 161 ~~~~~~~L~~L~l~~n~l~~~~~~ 184 (237)
.+..+++|+.|++++|++....+.
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCCSSSS
T ss_pred HhccccCCCEEEecCCCeeCCCcc
Confidence 788999999999999999865543
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.4e-26 Score=188.38 Aligned_cols=194 Identities=22% Similarity=0.326 Sum_probs=174.8
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccC---------CCCC
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGG---------LLNL 71 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------l~~L 71 (237)
+|+|++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.. +++|
T Consensus 108 ~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L 185 (328)
T 4fcg_A 108 HMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185 (328)
T ss_dssp EEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTC
T ss_pred EEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCC
Confidence 4899999999 88888999999999999999999 77888999999999999998887788877654 9999
Q ss_pred CEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcC
Q 038699 72 DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSH 151 (237)
Q Consensus 72 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 151 (237)
++|++++|.++ .+|..+..+++|++|++++|.+. ..|..+..+++|+.| ++++|.+.+..|..+..+++|+.|++++
T Consensus 186 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L-~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL-DLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp CEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEE-ECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEE-ECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 99999999999 78888999999999999999998 466679999999999 9999999889999999999999999999
Q ss_pred CcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccC
Q 038699 152 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNN 199 (237)
Q Consensus 152 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n 199 (237)
|.+.+..|..+..+++|++|++++|++.+.+|.. ..++.+..+.+..+
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9998899999999999999999999999888865 45666666666544
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.2e-26 Score=185.27 Aligned_cols=202 Identities=28% Similarity=0.261 Sum_probs=128.3
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCc--cCccccCCCCCCEEeccCCcccccCcc---------------
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGE--IPAHIGNLTELSTLSLNGNNISGQIPE--------------- 63 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------- 63 (237)
+|++++|+++...+..|..+++|++|++++|.+... .+..+..+++|++|++++|.++ .++.
T Consensus 32 ~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~ 110 (306)
T 2z66_A 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 110 (306)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTT
T ss_pred EEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCC
Confidence 378888988866666688888888888888887632 1334444555555555555544 2333
Q ss_pred ----------cccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccc-cCCccccCccCccccccCcCccccc
Q 038699 64 ----------EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIG-TIPFQIGNLVGLQDLQDLSYNSLTG 132 (237)
Q Consensus 64 ----------~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~~l~~n~~~~ 132 (237)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.| ++++|.+++
T Consensus 111 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~Ls~n~l~~ 189 (306)
T 2z66_A 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLEQ 189 (306)
T ss_dssp SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCE
T ss_pred CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE-ECCCCCcCC
Confidence 44455555555555555554444555566666666666666654 355566666677777 777777666
Q ss_pred ccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-Ccc-CCCccchhccCCcccc
Q 038699 133 EIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVF-SSSQSSAFTNNKDLCG 204 (237)
Q Consensus 133 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~-~~l~~~~l~~n~~l~~ 204 (237)
..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+.. ..+ +.+..+++.+|+.-|.
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 65666666777777777777776555556666777777777777777655543 333 3677777777766553
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=5e-26 Score=192.61 Aligned_cols=120 Identities=23% Similarity=0.182 Sum_probs=91.6
Q ss_pred cccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCC
Q 038699 86 PNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSM 165 (237)
Q Consensus 86 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 165 (237)
+..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++..|..+..+
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL-NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE-ECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 3445566777777777777776667777778888888 888888876667777888888888888888887667788888
Q ss_pred CCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccC
Q 038699 166 LSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKV 206 (237)
Q Consensus 166 ~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~ 206 (237)
++|++|++++|++++..+.. ..++.++.+++.+|+..|..+
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 88888888888888655543 467788888888888777654
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=6.5e-26 Score=182.57 Aligned_cols=193 Identities=25% Similarity=0.275 Sum_probs=129.3
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCccccc--CcccccCCCCCCEEEccCC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQ--IPEEIGGLLNLDSLDLSMN 79 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n 79 (237)
++.++++++.. |..+. +++++|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|++++|
T Consensus 12 l~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCSSC-CSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEcCCCCcccC-CCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 57788888744 44432 6899999999999965566689999999999999998733 2566677889999999999
Q ss_pred cCcCcccccccCCCCCCEEEccCCcccccCC-ccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC-c
Q 038699 80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG-E 157 (237)
Q Consensus 80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~ 157 (237)
.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|+.| ++++|.+....+..+..+++|+.|++++|.+++ .
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE-ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE-ECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 887 456567777777777777777764433 356666666666 666666655555555556666666666665553 3
Q ss_pred cCccccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhccC
Q 038699 158 IPASLSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFTNN 199 (237)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~~n 199 (237)
.|..+..+++|++|++++|++++..|. ...+++++.+++.+|
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC
Confidence 455555555555555555555544332 233445555555544
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=8.2e-26 Score=177.15 Aligned_cols=179 Identities=26% Similarity=0.289 Sum_probs=160.1
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
+++++++++. +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 19 l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 19 VDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp EECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 6888999984 454443 6899999999999988888899999999999999999988888899999999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
++..+..+..+++|++|++++|.+++..+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+++..+..
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL-RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEE-ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 97777788999999999999999997777778999999999 99999999777778999999999999999999777778
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCC
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPD 184 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~ 184 (237)
+..+++|++|++++|++.+....
T Consensus 175 ~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp TTTCTTCCEEECCSCCBCTTSTT
T ss_pred HhCCCCCCEEEeeCCceeCCccc
Confidence 99999999999999999876444
No 19
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=4.3e-26 Score=177.44 Aligned_cols=194 Identities=16% Similarity=0.180 Sum_probs=160.4
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCc-CCCccCccccCCCCCCEEeccC-CcccccCcccccCCCCCCEEEccC
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQ-LSGEIPAHIGNLTELSTLSLNG-NNISGQIPEEIGGLLNLDSLDLSM 78 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~ 78 (237)
+|++++|++++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|..+++|++|++++
T Consensus 35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~ 114 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114 (239)
T ss_dssp EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence 37899999998888889999999999999997 8766666888999999999998 888876677888999999999999
Q ss_pred CcCcCcccccccCCCCCC---EEEccCC-cccccCCccccCccCcc-ccccCcCcccccccChhhcCCCCCCeEeCcCCc
Q 038699 79 NRLSGPIPNQIGELRDLR---ILNLSQN-NLIGTIPFQIGNLVGLQ-DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNN 153 (237)
Q Consensus 79 n~i~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 153 (237)
|.+++ +|. +..+++|+ +|++++| .+....+..+..+++|+ .+ ++++|.++...+..|.. ++|+.|++++|.
T Consensus 115 n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L-~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~ 190 (239)
T 2xwt_C 115 TGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL-KLYNNGFTSVQGYAFNG-TKLDAVYLNKNK 190 (239)
T ss_dssp ECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEE-ECCSCCCCEECTTTTTT-CEEEEEECTTCT
T ss_pred CCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEE-EcCCCCCcccCHhhcCC-CCCCEEEcCCCC
Confidence 99884 565 77888887 9999999 88866667788899999 99 99999988555555655 789999999995
Q ss_pred -CcCccCccccCC-CCCCEEEcCCCcCcCCCCCCCccCCCccchhccCC
Q 038699 154 -LSGEIPASLSSM-LSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNK 200 (237)
Q Consensus 154 -l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~ 200 (237)
++...+..|..+ ++|++|++++|++++ +|.. .++.++.+.+.++.
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC-
T ss_pred CcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCcc
Confidence 886667788888 899999999999984 4443 67888888877764
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=8.6e-25 Score=177.84 Aligned_cols=206 Identities=25% Similarity=0.302 Sum_probs=132.7
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCccc----------------
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEE---------------- 64 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------------- 64 (237)
+|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..
T Consensus 56 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEIT 134 (330)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCccc
Confidence 3788888888877778888899999999999888777888888888888888888877 33433
Q ss_pred ------ccCCCCCCEEEccCCcCcC--cccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699 65 ------IGGLLNLDSLDLSMNRLSG--PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136 (237)
Q Consensus 65 ------~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~ 136 (237)
+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.. .|..+. ++|+.| ++++|.+++..+.
T Consensus 135 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L-~l~~n~l~~~~~~ 210 (330)
T 1xku_A 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTEL-HLDGNKITKVDAA 210 (330)
T ss_dssp BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEE-ECTTSCCCEECTG
T ss_pred ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEE-ECCCCcCCccCHH
Confidence 3344445555555444431 223344445555555555554442 222221 455556 6666666655566
Q ss_pred hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCC
Q 038699 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCN 213 (237)
Q Consensus 137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~ 213 (237)
.+..+++|+.|++++|.+++..+..+..+++|++|++++|+++........++.++.+++.+|. +.+.++. .+|.
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~-~f~~ 285 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSN-DFCP 285 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTT-SSSC
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChh-hcCC
Confidence 6777777777777777777655666777777777777777777444445556677777777763 4433332 4443
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.4e-25 Score=188.58 Aligned_cols=200 Identities=21% Similarity=0.208 Sum_probs=143.5
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
++.++.+++. +|..+. ++++.|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 59 v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 4556667764 454443 6899999999999988889999999999999999999988888999999999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcC-cccccccChhhc---------------------
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSY-NSLTGEIPAQLG--------------------- 139 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~-n~~~~~~~~~~~--------------------- 139 (237)
+...+..+..+++|++|++++|.+....+..+..+++|+.| ++++ +.+....+..|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL-DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL 214 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE-ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCC
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE-eCCCCCCccccChhhccCCCCCCEEECCCCcccccccc
Confidence 96666779999999999999999886555556555555555 5555 223322233344
Q ss_pred -CCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccC
Q 038699 140 -KLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKV 206 (237)
Q Consensus 140 -~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~ 206 (237)
.+++|+.|++++|.+++..+..|..+++|++|++++|++++..+.. ..+++++.+++.+| .+.+.+
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccC
Confidence 4455555555555555555566666666666666666666544432 34566777777766 344433
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=8.5e-25 Score=178.04 Aligned_cols=195 Identities=23% Similarity=0.261 Sum_probs=126.5
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+. ++|++|++++|.
T Consensus 58 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~ 134 (332)
T 2ft3_A 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNR 134 (332)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCc
Confidence 3788888888877778888899999999998888777888888888888888888887 4454433 577777777777
Q ss_pred CcCcccccccCCCCCCEEEccCCcccc--cCCccccCc--------------------cCccccccCcCcccccccChhh
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIG--TIPFQIGNL--------------------VGLQDLQDLSYNSLTGEIPAQL 138 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l--------------------~~L~~L~~l~~n~~~~~~~~~~ 138 (237)
+....+..+..+++|++|++++|.+.. ..+..+..+ ++|+.| ++++|.+++..+..+
T Consensus 135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L-~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL-HLDHNKIQAIELEDL 213 (332)
T ss_dssp CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCC-BCCSSCCCCCCTTSS
T ss_pred cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEE-ECCCCcCCccCHHHh
Confidence 765444556667777777777766642 222222222 344555 555555554444555
Q ss_pred cCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 139 GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 139 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
..+++|+.|++++|.+++..+..+..+++|++|++++|+++...+....++.++.+++.+|
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence 5666666666666666655555566666666666666666633333344555666666555
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=6.5e-25 Score=174.03 Aligned_cols=194 Identities=27% Similarity=0.285 Sum_probs=154.2
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|.++.. +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 46 L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 46 IIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp EECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC
Confidence 67788887743 3477888899999999988853 3678888999999999988876666778888999999999988
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
.+..+..+..+++|++|++++|.+++..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++..+..
T Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (272)
T 3rfs_A 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL-DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE-ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH
Confidence 86666667888899999999998886666677888889999 99999888777777788889999999999888777777
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCC
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQ 207 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~ 207 (237)
+..+++|++|++++|++.+..| .+..+.+..| .+.|.+|
T Consensus 201 ~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n-~~~g~ip 239 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWIN-KHSGVVR 239 (272)
T ss_dssp TTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHH-HTGGGBB
T ss_pred HhCCcCCCEEEccCCCccccCc------HHHHHHHHHH-hCCCccc
Confidence 8888999999999998886555 3455565555 3555544
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=2.6e-25 Score=188.19 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=72.2
Q ss_pred CEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCC
Q 038699 96 RILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSY 175 (237)
Q Consensus 96 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 175 (237)
++|++++|.+.+..+..+..+++|+.| ++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQL-TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred eEEEecCccccccchhhcccCCCCCEE-ECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 333333333333345556666777777 7777777766666777777777777777777766667777777888888888
Q ss_pred CcCcCCCCC-CCccCCCccchhccCCcccccCC
Q 038699 176 NNLEGPLPD-GSVFSSSQSSAFTNNKDLCGKVQ 207 (237)
Q Consensus 176 n~l~~~~~~-~~~~~~l~~~~l~~n~~l~~~~~ 207 (237)
|++++..|. ...+++++.+++.+|. +.+.++
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 388 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQ-LKSVPD 388 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred CcccccChhhccccccccEEECCCCc-cccCCH
Confidence 877766553 3456777777777763 444433
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.5e-25 Score=186.94 Aligned_cols=194 Identities=23% Similarity=0.248 Sum_probs=138.0
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
++.++.+++ .+|..+. ++++.|+|++|.+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 48 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 48 VICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 455666776 4454443 6899999999999987888999999999999999999988888999999999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCc-ccccccChhhcCCCCCCeEeCc----------
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYN-SLTGEIPAQLGKLTRLQSLNLS---------- 150 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n-~~~~~~~~~~~~~~~L~~L~l~---------- 150 (237)
+...+..+..+++|++|++++|.+....+..+..+++|+.| ++++| .+....+..|.++++|+.|+++
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L-~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 203 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL-DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL 203 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE-ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCC
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe-CCCCCCCcceeCcchhhcccccCeecCCCCcCcccccc
Confidence 96666689999999999999999886655566666666666 66653 3333333345555555555554
Q ss_pred ------------CCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccC
Q 038699 151 ------------HNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNN 199 (237)
Q Consensus 151 ------------~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n 199 (237)
+|.+++..+..|..+++|++|++++|++++..+.. ..+++++.+++.+|
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 45444444455555555555555555555443322 33455666666666
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=5.3e-26 Score=198.94 Aligned_cols=203 Identities=26% Similarity=0.198 Sum_probs=178.1
Q ss_pred EEecCCcCCCC--CCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEEccC
Q 038699 2 LGLAGNSIGGK--IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIP-EEIGGLLNLDSLDLSM 78 (237)
Q Consensus 2 L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~ 78 (237)
|++++|.+++. .+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcC
Confidence 77888888766 3677888899999999999888 466788899999999999999987666 6788999999999999
Q ss_pred CcCcCcccccccCCCCCCEEEccCCcccc-cCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCc
Q 038699 79 NRLSGPIPNQIGELRDLRILNLSQNNLIG-TIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGE 157 (237)
Q Consensus 79 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 157 (237)
|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 434 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL-DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp SCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE
T ss_pred CCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE-ECCCCcCCccChhhhcccccCCEEECCCCcCCCc
Confidence 99998888889999999999999999987 478889999999999 9999999988889999999999999999999988
Q ss_pred cCccccCCCCCCEEEcCCCcCcCCCCCCCccC-CCccchhccCCcccccC
Q 038699 158 IPASLSSMLSLVAVNLSYNNLEGPLPDGSVFS-SSQSSAFTNNKDLCGKV 206 (237)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~l~~~~l~~n~~l~~~~ 206 (237)
.|..+..+++|++|++++|+++...+....++ +++.+++.+|+..|...
T Consensus 513 ~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 89999999999999999999995444445555 59999999999998554
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=3.9e-25 Score=183.82 Aligned_cols=105 Identities=22% Similarity=0.180 Sum_probs=62.3
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+
T Consensus 74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence 56666666655555666666666666666666655555566666666666666666633333345566666666666666
Q ss_pred cCcccccccCCCCCCEEEccCCccc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLI 106 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~ 106 (237)
.+..+..+..+++|++|++++|.++
T Consensus 154 ~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 154 ERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CccChhhccCCCCCCEEECCCCcCC
Confidence 5444455555566666666555544
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=4e-26 Score=187.39 Aligned_cols=204 Identities=21% Similarity=0.196 Sum_probs=150.8
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 56 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 135 (353)
T 2z80_A 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135 (353)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred EEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC
Confidence 37888899887777788888999999999998887777778888899999999988885555558888888888888888
Q ss_pred CcCccc-ccccCCCCCCEEEccCCc-ccccCCccccCccCccccccCcCcccccccChhhcCCCCCC-------------
Q 038699 81 LSGPIP-NQIGELRDLRILNLSQNN-LIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQ------------- 145 (237)
Q Consensus 81 i~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~------------- 145 (237)
+.+..+ ..+..+++|++|++++|. +....+..+..+++|+.| ++++|.+.+..+..+..+++|+
T Consensus 136 l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL-EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE-EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE-ECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 884333 367788888888888873 555556667777777777 7777777766566555555444
Q ss_pred -----------eEeCcCCcCcCc-------------------------------cCccccCCCCCCEEEcCCCcCcCCCC
Q 038699 146 -----------SLNLSHNNLSGE-------------------------------IPASLSSMLSLVAVNLSYNNLEGPLP 183 (237)
Q Consensus 146 -----------~L~l~~n~l~~~-------------------------------~~~~~~~~~~L~~L~l~~n~l~~~~~ 183 (237)
.|++++|.+++. +|..+..+++|++|++++|+++...+
T Consensus 215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~ 294 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294 (353)
T ss_dssp HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH
Confidence 445555544431 22345667889999999999984444
Q ss_pred CC-CccCCCccchhccCCccccc
Q 038699 184 DG-SVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 184 ~~-~~~~~l~~~~l~~n~~l~~~ 205 (237)
.. ..+++++.+++.+|+..|..
T Consensus 295 ~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHhcCCCCCEEEeeCCCccCcC
Confidence 33 56788899999999877754
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=1.7e-24 Score=176.24 Aligned_cols=202 Identities=26% Similarity=0.275 Sum_probs=164.3
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|++++..|..|..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 82 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp EEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 3789999999888999999999999999999998 4554443 789999999998886666678888889999888888
Q ss_pred CcC--cccccccCC--------------------CCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhh
Q 038699 81 LSG--PIPNQIGEL--------------------RDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL 138 (237)
Q Consensus 81 i~~--~~~~~~~~l--------------------~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~ 138 (237)
++. ..+..+..+ ++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..+
T Consensus 159 l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L-~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL-GLGHNQIRMIENGSL 237 (332)
T ss_dssp CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC-BCCSSCCCCCCTTGG
T ss_pred cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE-ECCCCcCCcCChhHh
Confidence 752 333333322 467788888888887777889999999999 999999998888889
Q ss_pred cCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCC-------ccCCCccchhccCCcccccCC
Q 038699 139 GKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS-------VFSSSQSSAFTNNKDLCGKVQ 207 (237)
Q Consensus 139 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-------~~~~l~~~~l~~n~~l~~~~~ 207 (237)
..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+... .+..+..+++.+|+..+..++
T Consensus 238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccC
Confidence 99999999999999999 788889999999999999999996554432 145678899999987754443
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=3.1e-25 Score=194.08 Aligned_cols=202 Identities=23% Similarity=0.233 Sum_probs=136.2
Q ss_pred EEecCCcCCCCC--CcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcc-cccCCCCCCEEEccC
Q 038699 2 LGLAGNSIGGKI--PAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE-EIGGLLNLDSLDLSM 78 (237)
Q Consensus 2 L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 78 (237)
|++++|.+++.. +..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+. .+..+++|++|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 445555555443 44455555555555555555544555555566666666666665544332 255666666666666
Q ss_pred CcCcCcccccccCCCCCCEEEccCCccccc---CCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699 79 NRLSGPIPNQIGELRDLRILNLSQNNLIGT---IPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155 (237)
Q Consensus 79 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 155 (237)
|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL-VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE-ECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 666655566666777777777777776542 22456777777777 77888777777777788888888888888888
Q ss_pred CccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCccccc
Q 038699 156 GEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~ 205 (237)
+..|..+..++.| +|++++|++++.+|.. ..++.++.+++.+|+..|..
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 7777788888888 8888888888666653 45677889999999988754
No 31
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6.4e-26 Score=183.23 Aligned_cols=192 Identities=26% Similarity=0.319 Sum_probs=96.6
Q ss_pred EEecCCcCCCCCCccc--CCCCCCcEEEccCCcCCCccCccccCC-----CCCCEEeccCCcccccCcccccCCCCCCEE
Q 038699 2 LGLAGNSIGGKIPAEI--GSLSQLVELHLSSNQLSGEIPAHIGNL-----TELSTLSLNGNNISGQIPEEIGGLLNLDSL 74 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 74 (237)
|++++|++++..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..+..+..+++|++|
T Consensus 100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEE
T ss_pred EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEE
Confidence 4555555555555443 5555555555555555543 4444443 555555555555554444555555555555
Q ss_pred EccCCcCcCc--ccccc--cCCCCCCEEEccCCcccc---cCCccccCccCccccccCcCcccccccC-hhhcCCCCCCe
Q 038699 75 DLSMNRLSGP--IPNQI--GELRDLRILNLSQNNLIG---TIPFQIGNLVGLQDLQDLSYNSLTGEIP-AQLGKLTRLQS 146 (237)
Q Consensus 75 ~l~~n~i~~~--~~~~~--~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~~l~~n~~~~~~~-~~~~~~~~L~~ 146 (237)
++++|.+.+. .+..+ ..+++|++|++++|.+.+ .....+..+++|+.| ++++|.+++..+ ..+..+++|+.
T Consensus 179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL-DLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE-ECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE-ECCCCcCCcccchhhhhhcCCCCE
Confidence 5555554322 12222 455555555555555541 111222344555555 555555554332 23334455555
Q ss_pred EeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 147 LNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 147 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
|++++|.++ .+|..+. ++|++|++++|++++. |....++.++.+++.+|
T Consensus 258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGN 306 (312)
T ss_dssp EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTC
T ss_pred EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCC
Confidence 555555555 3444333 4555555555555543 33444555555555555
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=3.1e-25 Score=188.96 Aligned_cols=178 Identities=28% Similarity=0.297 Sum_probs=149.5
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|||++|++++..+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++|.
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence 37899999998888889999999999999999997778889999999999999999986666678889999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.++...+..+..+++|+.|++++|.+.+..+.
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL-TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE-EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT
T ss_pred cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE-ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh
Confidence 987777888899999999999999887777888888999999 9999988866666788888888888888888766666
Q ss_pred cccCCCCCCEEEcCCCcCc
Q 038699 161 SLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 161 ~~~~~~~L~~L~l~~n~l~ 179 (237)
.+..+++|++|++++|...
T Consensus 195 ~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp CSCSCTTCCEEEEECCTTC
T ss_pred hcccCcccceeeCCCCccc
Confidence 6666666666666665443
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=3.2e-24 Score=174.44 Aligned_cols=202 Identities=23% Similarity=0.280 Sum_probs=166.8
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCc---------------------cCccccCCCCCCEEeccCCcccc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGE---------------------IPAHIGNLTELSTLSLNGNNISG 59 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~---------------------~~~~~~~l~~L~~L~l~~n~l~~ 59 (237)
+|++++|++++..|..|..+++|++|++++|.++.. .+..|..+++|++|++++|.++.
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 80 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred EEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 378888999888888888888888888888877622 22335677888888888887753
Q ss_pred --cCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChh
Q 038699 60 --QIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQ 137 (237)
Q Consensus 60 --~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~ 137 (237)
..+..+..+++|++|++++|.++ .+|..+ .++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL-GLSFNSISAVDNGS 235 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEE-ECCSSCCCEECTTT
T ss_pred cCcChhhccCCCCcCEEECCCCccc-cCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEE-ECCCCcCceeChhh
Confidence 56678889999999999999998 455444 3899999999999998888899999999999 99999999888888
Q ss_pred hcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCC-------ccCCCccchhccCCcccccCC
Q 038699 138 LGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS-------VFSSSQSSAFTNNKDLCGKVQ 207 (237)
Q Consensus 138 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-------~~~~l~~~~l~~n~~l~~~~~ 207 (237)
+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+... ....+..+++.+|+..+..++
T Consensus 236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~ 311 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311 (330)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence 999999999999999999 788889999999999999999996554432 235677889999987765443
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-25 Score=190.29 Aligned_cols=200 Identities=22% Similarity=0.225 Sum_probs=156.5
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcc----------------c
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE----------------E 64 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~ 64 (237)
+|+|++|.+++..|..|..+++|+.|+|++|.+++..+ |..+++|++|++++|.+++..+. .
T Consensus 38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~ 115 (487)
T 3oja_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS 115 (487)
T ss_dssp EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEE
T ss_pred EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCC
Confidence 38999999999888999999999999999999986554 88999999999999988743211 1
Q ss_pred ccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCcccc-CccCccccccCcCcccccccChhhcCCCC
Q 038699 65 IGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIG-NLVGLQDLQDLSYNSLTGEIPAQLGKLTR 143 (237)
Q Consensus 65 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~~l~~n~~~~~~~~~~~~~~~ 143 (237)
...+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+. .+++|+.| ++++|.+++..+ ...+++
T Consensus 116 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L-~Ls~N~l~~~~~--~~~l~~ 192 (487)
T 3oja_A 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL-NLQYNFIYDVKG--QVVFAK 192 (487)
T ss_dssp ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE-ECTTSCCCEEEC--CCCCTT
T ss_pred ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE-ecCCCccccccc--cccCCC
Confidence 12356677777777777766666777788888888888888776666665 67888888 888888875533 235788
Q ss_pred CCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccC
Q 038699 144 LQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKV 206 (237)
Q Consensus 144 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~ 206 (237)
|+.|++++|.+++ .|..+..+++|+.|++++|.+++.++....++.+..+++.+|+..|+.+
T Consensus 193 L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 193 LKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred CCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 8889999988884 4555888899999999999998755555667888899999998887654
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=4.7e-25 Score=187.80 Aligned_cols=203 Identities=23% Similarity=0.231 Sum_probs=159.9
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 37888898888888888888889999998888887777788888888888888888886655667777888888888777
Q ss_pred CcCcccccccCCCCCCE------------------------EEccCCcccccCCccccCccCccccccCcCcccccccCh
Q 038699 81 LSGPIPNQIGELRDLRI------------------------LNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA 136 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~------------------------L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~ 136 (237)
+.+..+..+..+++|++ |++++|.++...+..+..+++|+.| ++++|.+++..+.
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL-NLSYNPISTIEGS 266 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE-ECCSSCCCEECTT
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCee-ECCCCcCCccChh
Confidence 76554445555555544 4445555553333467788889999 9999998877778
Q ss_pred hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccc
Q 038699 137 QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCG 204 (237)
Q Consensus 137 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~ 204 (237)
.|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+.. ..+++++.+++.+|+..|.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 8888999999999999998877888999999999999999999655543 4567889999999988775
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=8.2e-25 Score=181.84 Aligned_cols=198 Identities=22% Similarity=0.147 Sum_probs=158.5
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|+++++.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 128 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc
Confidence 37899999987777778899999999999999997777789999999999999999998778889999999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccCh------------------------
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPA------------------------ 136 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~------------------------ 136 (237)
+....+..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.++.....
T Consensus 129 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L 207 (390)
T 3o6n_A 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL-QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE-ECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE-ECCCCcCCccccccccccceeecccccccccCCCCcc
Confidence 995544557899999999999999998778889999999999 9988887643211
Q ss_pred -----------------------------------hhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCC
Q 038699 137 -----------------------------------QLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181 (237)
Q Consensus 137 -----------------------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 181 (237)
.+..+++|+.|++++|.+++..|..+..+++|++|++++|++++.
T Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (390)
T 3o6n_A 208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287 (390)
T ss_dssp SEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE
T ss_pred eEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc
Confidence 234456677777777777666666777777777777777777654
Q ss_pred CCCCCccCCCccchhccC
Q 038699 182 LPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 182 ~~~~~~~~~l~~~~l~~n 199 (237)
......++.++.+++.+|
T Consensus 288 ~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp ECSSSCCTTCCEEECCSS
T ss_pred CcccCCCCCCCEEECCCC
Confidence 444445666777777666
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.1e-25 Score=190.98 Aligned_cols=105 Identities=22% Similarity=0.180 Sum_probs=60.7
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 55666666655555566666666666666666655555555666666666666666533333445566666666666665
Q ss_pred cCcccccccCCCCCCEEEccCCccc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLI 106 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~ 106 (237)
.+..+..+..+++|++|++++|.+.
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCChhhhhcCCcCcEEECcCCCCC
Confidence 5544445555555555555555443
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=1.9e-24 Score=189.05 Aligned_cols=154 Identities=19% Similarity=0.120 Sum_probs=122.1
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+||+++|.+++..|..|.++++|++|++++|.+.+..|.+|..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 116 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence 37899999998888889999999999999999987778889999999999999999987778888899999999999998
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCC--eEeCcCCcCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQ--SLNLSHNNLS 155 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~--~L~l~~n~l~ 155 (237)
+.+..+..+..+++|++|++++|.+.+.....+..+++|+.| ++++|.+++..+..+..+++|+ .|++++|.++
T Consensus 117 i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL-DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE-ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE-EcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 886656778888888888888888876443344447777777 7777777655555566666555 5555555443
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=1e-24 Score=193.15 Aligned_cols=204 Identities=24% Similarity=0.240 Sum_probs=146.5
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccC-ccccCCCCCCEEeccCCccccc--------------------
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIP-AHIGNLTELSTLSLNGNNISGQ-------------------- 60 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~-------------------- 60 (237)
|++++|++++..|.+|..+++|+.|++++|.+.+.++ ..|..+++|++|++++|.+++.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 6777888877777777777888888888877765443 5566677777777777665433
Q ss_pred ------CcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCC--------ccccCccCccccccCc
Q 038699 61 ------IPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP--------FQIGNLVGLQDLQDLS 126 (237)
Q Consensus 61 ------~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~~l~ 126 (237)
.|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+ ..+..+++|+.| +++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L-~L~ 544 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL-NLE 544 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE-ECC
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE-ECC
Confidence 44556666677777777777765555566777777777777777664311 235667777777 788
Q ss_pred CcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCC--ccCCCccchhccCCcccc
Q 038699 127 YNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGS--VFSSSQSSAFTNNKDLCG 204 (237)
Q Consensus 127 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~~l~~~~l~~n~~l~~ 204 (237)
+|.++...+..|.++++|+.|++++|.++...+..|..+++|++|++++|++++..+... .++++..+++.+|++.|.
T Consensus 545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 887775555567888888888888888886666667788888888888888886665432 478899999999999997
Q ss_pred cC
Q 038699 205 KV 206 (237)
Q Consensus 205 ~~ 206 (237)
..
T Consensus 625 c~ 626 (680)
T 1ziw_A 625 CE 626 (680)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=2.8e-25 Score=182.35 Aligned_cols=174 Identities=24% Similarity=0.236 Sum_probs=148.1
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
.|.++++++.+ |..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 36 c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 57788888854 54443 5899999999999976666899999999999999999987788899999999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCC-ccccCccCccccccCcCc-ccccccChhhcCCCCCCeEeCcCCcCcCccC
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYN-SLTGEIPAQLGKLTRLQSLNLSHNNLSGEIP 159 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 159 (237)
++..+..+..+++|++|++++|.+....+ ..+..+++|+.| ++++| .+....+..+..+++|+.|++++|.+++..|
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL-RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE-EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE-ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 96555568999999999999999985444 478999999999 99999 4776777889999999999999999997778
Q ss_pred ccccCCCCCCEEEcCCCcCc
Q 038699 160 ASLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 160 ~~~~~~~~L~~L~l~~n~l~ 179 (237)
..+..+++|++|++++|++.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTTTTCSEEEEEEEECSCST
T ss_pred HHHhccccCCeecCCCCccc
Confidence 88887777777777777664
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=3.4e-24 Score=171.39 Aligned_cols=176 Identities=28% Similarity=0.250 Sum_probs=159.7
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|.+++..+..|..+++|++|++++|.+++..+ ...+++|++|++++|.++ .+|..+..+++|++|++++|.
T Consensus 35 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~ 111 (290)
T 1p9a_G 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNR 111 (290)
T ss_dssp EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSC
T ss_pred EEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCc
Confidence 38999999999888999999999999999999995433 378999999999999998 778888999999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
+++..+..|..+++|++|++++|.+....+..+..+++|+.| ++++|+++...+..|..+++|+.|++++|.++ .+|.
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL-SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189 (290)
T ss_dssp CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE-ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence 997767889999999999999999997777788999999999 99999999777778889999999999999999 6787
Q ss_pred cccCCCCCCEEEcCCCcCcCC
Q 038699 161 SLSSMLSLVAVNLSYNNLEGP 181 (237)
Q Consensus 161 ~~~~~~~L~~L~l~~n~l~~~ 181 (237)
.+...++|+.+++++|++.+.
T Consensus 190 ~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTTTTCCCSEEECCSCCBCCS
T ss_pred hhcccccCCeEEeCCCCccCc
Confidence 888889999999999998753
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-24 Score=189.76 Aligned_cols=199 Identities=22% Similarity=0.150 Sum_probs=164.1
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
++++++|.++...+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 134 (597)
T 3oja_B 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134 (597)
T ss_dssp EEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC
Confidence 37889999988777778999999999999999998778899999999999999999998888889999999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccC-------------------------
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP------------------------- 135 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~------------------------- 135 (237)
+.+..+..|..+++|++|++++|.+.+..|..+..+++|+.| ++++|.+++...
T Consensus 135 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L 213 (597)
T 3oja_B 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL-QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 213 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE-ECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTC
T ss_pred CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE-ECcCCCCCCcChhhhhhhhhhhcccCccccccCCchh
Confidence 996655667999999999999999998888889999999999 999888764321
Q ss_pred ----------------------------------hhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCC
Q 038699 136 ----------------------------------AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181 (237)
Q Consensus 136 ----------------------------------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 181 (237)
..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 214 ~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 293 (597)
T 3oja_B 214 EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293 (597)
T ss_dssp SEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE
T ss_pred heeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC
Confidence 2245566777777777777766677777777788888888777765
Q ss_pred CCCCCccCCCccchhccCC
Q 038699 182 LPDGSVFSSSQSSAFTNNK 200 (237)
Q Consensus 182 ~~~~~~~~~l~~~~l~~n~ 200 (237)
.+....++.+..+++.+|.
T Consensus 294 ~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 294 NLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp ECSSSCCTTCCEEECCSSC
T ss_pred CcccccCCCCcEEECCCCC
Confidence 4444456777777777764
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.3e-24 Score=171.13 Aligned_cols=183 Identities=25% Similarity=0.273 Sum_probs=161.9
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 56 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc
Confidence 48999999998888899999999999999999997777889999999999999999997666679999999999999999
Q ss_pred CcCc-ccccccCCCCCCEEEccCCcccccCCccccCccCcc----ccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699 81 LSGP-IPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQ----DLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155 (237)
Q Consensus 81 i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 155 (237)
+.+. +|..+..+++|++|++++|.+++..+..+..+.+++ .+ ++++|.+....+..+. ..+|+.|++++|.++
T Consensus 136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L-~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL-DLSLNPMNFIQPGAFK-EIRLKELALDTNQLK 213 (276)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE-ECCSSCCCEECTTSSC-SCCEEEEECCSSCCS
T ss_pred cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee-ecCCCcccccCccccC-CCcccEEECCCCcee
Confidence 9853 588899999999999999999877777788787777 78 9999999966666554 458999999999999
Q ss_pred CccCccccCCCCCCEEEcCCCcCcCCCCCC
Q 038699 156 GEIPASLSSMLSLVAVNLSYNNLEGPLPDG 185 (237)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 185 (237)
+..+..+..+++|++|++++|++++..+..
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ecCHhHhcccccccEEEccCCcccccCCch
Confidence 776777889999999999999999776654
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=5.3e-24 Score=168.75 Aligned_cols=196 Identities=23% Similarity=0.245 Sum_probs=168.0
Q ss_pred ecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcC
Q 038699 4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSG 83 (237)
Q Consensus 4 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 83 (237)
+..+.+... ..+..+++|+.|++.+|.+.. .+ .+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++
T Consensus 26 l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 26 LKKKSVTDA--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCC
T ss_pred hcCcccccc--cccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCc
Confidence 334444433 234567899999999999883 33 47889999999999999985 3 478899999999999999997
Q ss_pred cccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcccc
Q 038699 84 PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLS 163 (237)
Q Consensus 84 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 163 (237)
..+..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++..+..+.
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL-NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE-ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence 777778999999999999999997777778999999999 9999999977777889999999999999999977777789
Q ss_pred CCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCCcccccC
Q 038699 164 SMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKV 206 (237)
Q Consensus 164 ~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~ 206 (237)
.+++|++|++++|++++..+.. ..++.++.+++.+|+..|..+
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 9999999999999999877754 568899999999998776543
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=6.6e-25 Score=177.67 Aligned_cols=199 Identities=22% Similarity=0.226 Sum_probs=147.1
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcc----------------c
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE----------------E 64 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~ 64 (237)
+|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+. .
T Consensus 38 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~ 115 (317)
T 3o53_A 38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS 115 (317)
T ss_dssp EEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEE
T ss_pred EEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcC
Confidence 38999999998888889999999999999999985544 88899999999999988742110 0
Q ss_pred ccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccc-cCccCccccccCcCcccccccChhhcCCCC
Q 038699 65 IGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQI-GNLVGLQDLQDLSYNSLTGEIPAQLGKLTR 143 (237)
Q Consensus 65 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~ 143 (237)
...+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|+.| ++++|.+++... ...+++
T Consensus 116 ~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~--~~~l~~ 192 (317)
T 3o53_A 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL-NLQYNFIYDVKG--QVVFAK 192 (317)
T ss_dssp ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE-ECTTSCCCEEEC--CCCCTT
T ss_pred ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE-ECCCCcCccccc--cccccc
Confidence 1234566777777777765555567777778888888887776555554 356778888 888887774422 224778
Q ss_pred CCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699 144 LQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 144 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~ 205 (237)
|+.|++++|.++ ..+..+..+++|++|++++|++++..+....++.++.+++.+|+..|+.
T Consensus 193 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp CCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred CCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence 888888888887 4455577888888888888888855555556778888888888877654
No 46
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=1.6e-23 Score=164.15 Aligned_cols=180 Identities=22% Similarity=0.276 Sum_probs=160.4
Q ss_pred CCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEc
Q 038699 21 SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNL 100 (237)
Q Consensus 21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 100 (237)
...++++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35788999999999 5665554 68999999999999888888999999999999999999877788999999999999
Q ss_pred cCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcC
Q 038699 101 SQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180 (237)
Q Consensus 101 ~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 180 (237)
++|.+....+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKL-YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEE-EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999997777889999999999 999999997777778999999999999999997777789999999999999999997
Q ss_pred CCCC-CCccCCCccchhccCCcccc
Q 038699 181 PLPD-GSVFSSSQSSAFTNNKDLCG 204 (237)
Q Consensus 181 ~~~~-~~~~~~l~~~~l~~n~~l~~ 204 (237)
..+. ...++.++.+++.+|+.-|.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6663 45678899999999988775
No 47
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=4.2e-25 Score=194.36 Aligned_cols=140 Identities=22% Similarity=0.412 Sum_probs=79.9
Q ss_pred cCccccCCCCCCEEeccCCccccc-----------------Cccccc--CCCCCCEEEccCCcCcCcccccccCCCCCCE
Q 038699 37 IPAHIGNLTELSTLSLNGNNISGQ-----------------IPEEIG--GLLNLDSLDLSMNRLSGPIPNQIGELRDLRI 97 (237)
Q Consensus 37 ~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 97 (237)
+|..+..+++|++|++++|.+++. +|..+. .+++|++|++++|.+.+.+|..+..+++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 455566666666666666666643 566655 6666666666666666666666666666666
Q ss_pred EEccCCc-ccc-cCCccccCc------cCccccccCcCcccccccCh--hhcCCCCCCeEeCcCCcCcCccCccccCCCC
Q 038699 98 LNLSQNN-LIG-TIPFQIGNL------VGLQDLQDLSYNSLTGEIPA--QLGKLTRLQSLNLSHNNLSGEIPASLSSMLS 167 (237)
Q Consensus 98 L~l~~n~-~~~-~~~~~~~~l------~~L~~L~~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 167 (237)
|++++|. +++ ..|..++.+ ++|+.| ++++|.++ ..|. .+..+++|+.|++++|.+++.+| .+..+++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L-~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQII-YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE-ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEE-ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 6666665 554 445444443 555555 55555555 4444 55555555555555555554444 4444444
Q ss_pred CCEEEcCCCcCc
Q 038699 168 LVAVNLSYNNLE 179 (237)
Q Consensus 168 L~~L~l~~n~l~ 179 (237)
|++|++++|+++
T Consensus 355 L~~L~L~~N~l~ 366 (636)
T 4eco_A 355 LASLNLAYNQIT 366 (636)
T ss_dssp ESEEECCSSEEE
T ss_pred CCEEECCCCccc
Confidence 444444444444
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=3e-23 Score=183.75 Aligned_cols=198 Identities=28% Similarity=0.279 Sum_probs=138.3
Q ss_pred CEEecCCcCC--CCCCcccCCC--CCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEE
Q 038699 1 MLGLAGNSIG--GKIPAEIGSL--SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIP-EEIGGLLNLDSLD 75 (237)
Q Consensus 1 ~L~l~~n~~~--~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 75 (237)
+|++++|.+. ......|..+ ++|+.|++++|.+.+..+.+|..+++|+.|++++|.+++.++ ..+..+++|++|+
T Consensus 357 ~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436 (680)
T ss_dssp EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence 3788888754 2233334433 689999999999998888999999999999999999986555 6788889999999
Q ss_pred ccCCcCcCcc--------------------------cccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcc
Q 038699 76 LSMNRLSGPI--------------------------PNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNS 129 (237)
Q Consensus 76 l~~n~i~~~~--------------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~ 129 (237)
+++|.+.+.. |..+..+++|++|++++|.+++..+..+..+++|+.| ++++|.
T Consensus 437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L-~Ls~N~ 515 (680)
T 1ziw_A 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL-DLQHNN 515 (680)
T ss_dssp CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSC
T ss_pred cCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE-eCCCCC
Confidence 9888765433 3445555666666666666665555556666666666 666666
Q ss_pred cccccC--------hhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccC
Q 038699 130 LTGEIP--------AQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNN 199 (237)
Q Consensus 130 ~~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n 199 (237)
+++... ..+.++++|+.|++++|.++...+..|..+++|++|++++|++++..+.. ..++.++.+++.+|
T Consensus 516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence 654322 12556667777777777776444456777777777777777777544443 34567777777776
No 49
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=3.3e-24 Score=173.05 Aligned_cols=193 Identities=24% Similarity=0.229 Sum_probs=132.9
Q ss_pred EEecCCcCCCCCCccc--CCCCCCcEEEccCCcCCCccC----ccccCCCCCCEEeccCCcccccCcccccCCCCCCEEE
Q 038699 2 LGLAGNSIGGKIPAEI--GSLSQLVELHLSSNQLSGEIP----AHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD 75 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 75 (237)
|++++|++++..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 175 (310)
T 4glp_A 96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD 175 (310)
T ss_dssp EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE
T ss_pred EEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE
Confidence 6777888877777776 777788888888887775433 3344677888888888887766667777778888888
Q ss_pred ccCCcCcCc--c--cccccCCCCCCEEEccCCcccccCCc----cccCccCccccccCcCcccccccChhhcCC---CCC
Q 038699 76 LSMNRLSGP--I--PNQIGELRDLRILNLSQNNLIGTIPF----QIGNLVGLQDLQDLSYNSLTGEIPAQLGKL---TRL 144 (237)
Q Consensus 76 l~~n~i~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~---~~L 144 (237)
+++|.+.+. + +..+..+++|++|++++|.++. .+. .+..+++|+.| ++++|.+++..|..+..+ ++|
T Consensus 176 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L-~Ls~N~l~~~~p~~~~~~~~~~~L 253 (310)
T 4glp_A 176 LSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSL-DLSHNSLRATVNPSAPRCMWSSAL 253 (310)
T ss_dssp CCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSE-ECTTSCCCCCCCSCCSSCCCCTTC
T ss_pred CCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEE-ECCCCCCCccchhhHHhccCcCcC
Confidence 888876531 1 1223567778888888887752 222 24566777777 888888776656555554 578
Q ss_pred CeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCC
Q 038699 145 QSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNK 200 (237)
Q Consensus 145 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~ 200 (237)
++|++++|.++ .+|..+. ++|++|++++|++++. |....++.++.+++.+|+
T Consensus 254 ~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 254 NSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred CEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 88888888877 5555543 6788888888888743 444566777777777775
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=9.2e-24 Score=191.30 Aligned_cols=199 Identities=30% Similarity=0.280 Sum_probs=116.6
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|+|++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.++...+..|..+++|++|++++|.+
T Consensus 295 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp EEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred EECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 45555555555555555555555555555555544455555555555555555555544444555556666666655554
Q ss_pred cCcc------------------c----------------------ccccCCCCCCEEEccCCcccccC------------
Q 038699 82 SGPI------------------P----------------------NQIGELRDLRILNLSQNNLIGTI------------ 109 (237)
Q Consensus 82 ~~~~------------------~----------------------~~~~~l~~L~~L~l~~n~~~~~~------------ 109 (237)
++.. | ..+..+++|+.|++++|.+.+..
T Consensus 375 ~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~ 454 (844)
T 3j0a_A 375 TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454 (844)
T ss_dssp CCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCC
T ss_pred CcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccc
Confidence 4210 0 00113445555555555443211
Q ss_pred ------------------CccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEE
Q 038699 110 ------------------PFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAV 171 (237)
Q Consensus 110 ------------------~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 171 (237)
+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+++..+..+. ++|+.|
T Consensus 455 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L 531 (844)
T 3j0a_A 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVL-YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531 (844)
T ss_dssp BCEEESCCCSSSCCSCCCSSCSSCBCCEECC-CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred cccCCCCccccccccccchhhhcCcccccEE-ECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEE
Confidence 1234455666666 6666666666666667777777777777777754444443 677777
Q ss_pred EcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699 172 NLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 172 ~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~ 205 (237)
++++|++++.+|.. +..+..+++.+|+..|..
T Consensus 532 ~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 532 DISRNQLLAPNPDV--FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp EEEEECCCCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred ECCCCcCCCCChhH--hCCcCEEEecCCCccccc
Confidence 77777777666653 568889999999999843
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.6e-23 Score=181.78 Aligned_cols=187 Identities=25% Similarity=0.215 Sum_probs=156.1
Q ss_pred CCCCCCcEEEccCCcCCCcc--CccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccc-ccccCCCC
Q 038699 18 GSLSQLVELHLSSNQLSGEI--PAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIP-NQIGELRD 94 (237)
Q Consensus 18 ~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~ 94 (237)
..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++. +..+..+++|++|++++|.+.+..+ ..+..+++
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 56788888888888887543 56778888999999999988844 4448889999999999998886555 46788999
Q ss_pred CCEEEccCCcccccCCccccCccCccccccCcCcccc-cccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEc
Q 038699 95 LRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT-GEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNL 173 (237)
Q Consensus 95 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 173 (237)
|++|++++|.+.+..+..+..+++|+.| ++++|.+. +..|..+..+++|+.|++++|.+++..|..+..+++|++|++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEE-ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 9999999999988888888999999999 99999986 467888889999999999999999777888999999999999
Q ss_pred CCCcCcCCCCCC-CccCCCccchhccCCcccccC
Q 038699 174 SYNNLEGPLPDG-SVFSSSQSSAFTNNKDLCGKV 206 (237)
Q Consensus 174 ~~n~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~ 206 (237)
++|++++.++.. ..++.++.+++.+|+..|..+
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 999999776653 567889999999998777543
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=4.5e-24 Score=192.40 Aligned_cols=159 Identities=26% Similarity=0.425 Sum_probs=112.9
Q ss_pred cCccccCCCCCCEEeccCCcccc-----------------cCccccc--CCCCCCEEEccCCcCcCcccccccCCCCCCE
Q 038699 37 IPAHIGNLTELSTLSLNGNNISG-----------------QIPEEIG--GLLNLDSLDLSMNRLSGPIPNQIGELRDLRI 97 (237)
Q Consensus 37 ~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 97 (237)
+|..|..+++|+.|++++|.+++ .+|+.++ .+++|++|++++|.+.+.+|..+..+++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56667777888888888888775 2677766 7788888888888777777777778888888
Q ss_pred EEccCCc-ccc-cCCccccCcc-------CccccccCcCcccccccCh--hhcCCCCCCeEeCcCCcCcCccCccccCCC
Q 038699 98 LNLSQNN-LIG-TIPFQIGNLV-------GLQDLQDLSYNSLTGEIPA--QLGKLTRLQSLNLSHNNLSGEIPASLSSML 166 (237)
Q Consensus 98 L~l~~n~-~~~-~~~~~~~~l~-------~L~~L~~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 166 (237)
|++++|. +++ .+|..+..++ +|+.| ++++|.+. .+|. .+..+++|+.|++++|.++ .+| .+..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L-~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIF-YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE-ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEE-EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 8888876 665 5555554444 77777 77777777 5665 6777777777777777777 555 667777
Q ss_pred CCCEEEcCCCcCcCCCC-CCCccCC-CccchhccCC
Q 038699 167 SLVAVNLSYNNLEGPLP-DGSVFSS-SQSSAFTNNK 200 (237)
Q Consensus 167 ~L~~L~l~~n~l~~~~~-~~~~~~~-l~~~~l~~n~ 200 (237)
+|++|++++|+++ .+| ....++. ++.+++.+|.
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 7777777777777 343 3445555 6677776664
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.7e-24 Score=174.82 Aligned_cols=199 Identities=24% Similarity=0.286 Sum_probs=163.0
Q ss_pred EEecCCcCC-CCCCcccC-------CCCCCcEEEccCCcCCCccCccc--cCCCCCCEEeccCCcccccCcccccCC---
Q 038699 2 LGLAGNSIG-GKIPAEIG-------SLSQLVELHLSSNQLSGEIPAHI--GNLTELSTLSLNGNNISGQIPEEIGGL--- 68 (237)
Q Consensus 2 L~l~~n~~~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l--- 68 (237)
|++++|+++ ...+..+. .+++|++|++++|.+++..|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~ 146 (312)
T 1wwl_A 68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW 146 (312)
T ss_dssp CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT
T ss_pred cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh
Confidence 677888884 34444443 68999999999999998888776 8999999999999999965 7777776
Q ss_pred --CCCCEEEccCCcCcCcccccccCCCCCCEEEccCCccccc--CCccc--cCccCccccccCcCccccc---ccChhhc
Q 038699 69 --LNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGT--IPFQI--GNLVGLQDLQDLSYNSLTG---EIPAQLG 139 (237)
Q Consensus 69 --~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~--~~l~~L~~L~~l~~n~~~~---~~~~~~~ 139 (237)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+ ..+++|+.| ++++|.++. .....+.
T Consensus 147 ~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL-ALRNAGMETPSGVCSALAA 225 (312)
T ss_dssp CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE-ECTTSCCCCHHHHHHHHHH
T ss_pred hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE-ECCCCcCcchHHHHHHHHh
Confidence 8999999999999977778999999999999999997654 23333 889999999 999999983 2234456
Q ss_pred CCCCCCeEeCcCCcCcCccC-ccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699 140 KLTRLQSLNLSHNNLSGEIP-ASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 140 ~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~ 205 (237)
.+++|+.|++++|.+++..| ..+..+++|++|++++|+++ .+|.... ++++.+++.+| .+.+.
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N-~l~~~ 289 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYN-RLDRN 289 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSS-CCCSC
T ss_pred cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCC-CCCCC
Confidence 78999999999999997654 45667899999999999999 6666544 88999999988 45555
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=8.5e-24 Score=182.87 Aligned_cols=197 Identities=21% Similarity=0.208 Sum_probs=147.2
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|++++..|..|..+++|++|++++|.+++..+.+|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 37888888887777788888888888888888887677778888888888888888886666668888888888888888
Q ss_pred CcC-cccccccCCCCCCEEEccCCcccccC-CccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCcc
Q 038699 81 LSG-PIPNQIGELRDLRILNLSQNNLIGTI-PFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEI 158 (237)
Q Consensus 81 i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 158 (237)
+.+ ..+..+..+++|++|++++|.+.+.. +..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+. ..
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~ 187 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL-EIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FL 187 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE-EEEETTCCEECTTTTTTCSEEEEEEEECSBST-TH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee-eccCCcccccChhhhhccccCceEecccCccc-cc
Confidence 874 24566778888888888888743333 4577888888888 88888888777888888888888888888776 33
Q ss_pred Ccc-ccCCCCCCEEEcCCCcCcCCC----CCCCccCCCccchhccC
Q 038699 159 PAS-LSSMLSLVAVNLSYNNLEGPL----PDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 159 ~~~-~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~l~~~~l~~n 199 (237)
+.. +..+++|++|++++|++++.. +.....+.++.+.+.+|
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred chhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 333 356889999999999988632 22233445555555554
No 55
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=9e-23 Score=179.55 Aligned_cols=197 Identities=22% Similarity=0.277 Sum_probs=135.5
Q ss_pred EEecCCcCCCCCCcccCCCC--CCcEEEccCCcCCCccCcccc-------CCCCCCEEeccCCcccccCcccccCCCCCC
Q 038699 2 LGLAGNSIGGKIPAEIGSLS--QLVELHLSSNQLSGEIPAHIG-------NLTELSTLSLNGNNISGQIPEEIGGLLNLD 72 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 72 (237)
|++++|.++ .+|..+..+. +|++|++++|.+.+..|..+. .+++|++|++++|.++...+..+..+++|+
T Consensus 382 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~ 460 (636)
T 4eco_A 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460 (636)
T ss_dssp EECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS
T ss_pred EEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC
Confidence 667777776 5555555443 677777777777766666666 566777777777777733333455577777
Q ss_pred EEEccCCcCcCcccc-cccCC-------CCCCEEEccCCcccccCCcccc--CccCccccccCcCcccccccChhhcCCC
Q 038699 73 SLDLSMNRLSGPIPN-QIGEL-------RDLRILNLSQNNLIGTIPFQIG--NLVGLQDLQDLSYNSLTGEIPAQLGKLT 142 (237)
Q Consensus 73 ~L~l~~n~i~~~~~~-~~~~l-------~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~~l~~n~~~~~~~~~~~~~~ 142 (237)
+|++++|.++ .+|. .+... ++|++|++++|.++ .+|..+. .+++|+.| ++++|.+++ .|..+..++
T Consensus 461 ~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L-~Ls~N~l~~-ip~~~~~l~ 536 (636)
T 4eco_A 461 SINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGI-DLSYNSFSK-FPTQPLNSS 536 (636)
T ss_dssp EEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEE-ECCSSCCSS-CCCGGGGCS
T ss_pred EEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEE-ECCCCCCCC-cChhhhcCC
Confidence 7777777777 4443 23222 27788888888777 5666665 77888888 888888875 676777788
Q ss_pred CCCeEeC------cCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699 143 RLQSLNL------SHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 143 ~L~~L~l------~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~ 205 (237)
+|+.|++ ++|.+.+..|..+..+++|++|++++|++. .+|.. .++.++.+++.+|+..|-.
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHh-HhCcCCEEECcCCCCcccc
Confidence 8888888 456666677777888888888888888884 56654 3377888888888766644
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.2e-22 Score=163.81 Aligned_cols=185 Identities=26% Similarity=0.429 Sum_probs=156.1
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
.|++++|+++.. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ + ..+..+++|++|++++|.
T Consensus 45 ~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 45 TLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp EEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSC
T ss_pred EEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCC
Confidence 378999999864 3 58889999999999999995444 8899999999999999984 3 468899999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
+.+. + .+..+++|++|++++|.+.+..+ +..+++|+.| ++++|.+++..+ +..+++|+.|++++|.+++..+
T Consensus 119 l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L-~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 119 ITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL-SIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp CCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE-ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEE-EccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-
Confidence 9854 4 38899999999999999985433 8889999999 999999985433 8889999999999999985443
Q ss_pred cccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCc
Q 038699 161 SLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKD 201 (237)
Q Consensus 161 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~ 201 (237)
+..+++|++|++++|++++.. ....+++++.+++.+|+.
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred -hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 788999999999999999555 467788899999998864
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=4.9e-23 Score=180.13 Aligned_cols=195 Identities=22% Similarity=0.232 Sum_probs=161.5
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
++.++++++.+ |..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+
T Consensus 16 ~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 16 YQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 57778888744 44443 7899999999999877777889999999999999999877788889999999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCccccc-ccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG-EIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
.+..|..+..+++|++|++++|.+.+..+..++.+++|++| ++++|.+.+ ..|..+..+++|++|++++|.+++..+.
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL-NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE-ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE-eCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 87778889999999999999999987776788999999999 999999875 4588889999999999999999877777
Q ss_pred cccCCCCCC----EEEcCCCcCcCCCCCCCccCCCccchhccCC
Q 038699 161 SLSSMLSLV----AVNLSYNNLEGPLPDGSVFSSSQSSAFTNNK 200 (237)
Q Consensus 161 ~~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~ 200 (237)
.+..+++|+ +|++++|++++..+.......++.+++.+|.
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 777665554 8999999998766666555578888888774
No 58
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=6e-23 Score=176.57 Aligned_cols=198 Identities=22% Similarity=0.269 Sum_probs=157.1
Q ss_pred EEecCCcCCCCCCccc-----CCCCCCcEEEccCCcC--------------------------CCccCccccCCCCCCEE
Q 038699 2 LGLAGNSIGGKIPAEI-----GSLSQLVELHLSSNQL--------------------------SGEIPAHIGNLTELSTL 50 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~i--------------------------~~~~~~~~~~l~~L~~L 50 (237)
|++++|.+++.+|..+ ..+++|+.+++++|.+ .... .+..+++|++|
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 6788888887777776 6666666666555554 2111 02578899999
Q ss_pred eccCCcccccCcccccCCCCCCEEEccCCcCcC--cccccccCCCCCCEEEccCCcccccCCc-cccCccCccccccCcC
Q 038699 51 SLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSG--PIPNQIGELRDLRILNLSQNNLIGTIPF-QIGNLVGLQDLQDLSY 127 (237)
Q Consensus 51 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~~l~~ 127 (237)
++++|.+++..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..|. .+..+++|+.| ++++
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L-~Ls~ 408 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL-NMSS 408 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE-ECCS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE-ECcC
Confidence 999999997788889999999999999999985 4556788999999999999999874554 47888999999 9999
Q ss_pred cccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhccCCccccc
Q 038699 128 NSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 128 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~~n~~l~~~ 205 (237)
|.+++..+..+. ++|+.|++++|.++ .+|..+..+++|++|++++|++++..+. ...++.++.+++.+|+..|..
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 998766665543 78999999999998 7787777999999999999999954443 456788999999999887743
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.4e-23 Score=187.65 Aligned_cols=193 Identities=24% Similarity=0.376 Sum_probs=158.4
Q ss_pred CEEecCCcCCC-----------------CCCcccC--CCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCc-ccc-
Q 038699 1 MLGLAGNSIGG-----------------KIPAEIG--SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNN-ISG- 59 (237)
Q Consensus 1 ~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~- 59 (237)
+|+|++|++++ .+|+.+. ++++|++|+|++|.+.+.+|..|..+++|+.|++++|. +++
T Consensus 452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~ 531 (876)
T 4ecn_A 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531 (876)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH
T ss_pred EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc
Confidence 48999999998 3788877 99999999999999988999999999999999999998 886
Q ss_pred cCcccccCC-------CCCCEEEccCCcCcCcccc--cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCccc
Q 038699 60 QIPEEIGGL-------LNLDSLDLSMNRLSGPIPN--QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSL 130 (237)
Q Consensus 60 ~~~~~~~~l-------~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~ 130 (237)
.+|..+..+ ++|+.|++++|.+. .+|. .+..+++|++|++++|.+. .+| .+..+++|+.| ++++|.+
T Consensus 532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L-~Ls~N~l 607 (876)
T 4ecn_A 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL-KLDYNQI 607 (876)
T ss_dssp HHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEE-ECCSSCC
T ss_pred cchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEE-ECcCCcc
Confidence 677666555 49999999999999 7787 8999999999999999998 777 88899999999 9999999
Q ss_pred ccccChhhcCCCC-CCeEeCcCCcCcCccCccccCCCC--CCEEEcCCCcCcCCCCCCC------ccCCCccchhccC
Q 038699 131 TGEIPAQLGKLTR-LQSLNLSHNNLSGEIPASLSSMLS--LVAVNLSYNNLEGPLPDGS------VFSSSQSSAFTNN 199 (237)
Q Consensus 131 ~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~------~~~~l~~~~l~~n 199 (237)
. ..|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|++++.+|... ..++++.+++.+|
T Consensus 608 ~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 608 E-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp S-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred c-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 8 77777888888 999999999988 67777766544 8888888888877655432 1224555555544
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.2e-22 Score=176.40 Aligned_cols=159 Identities=21% Similarity=0.227 Sum_probs=128.2
Q ss_pred cCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCc--ccccccCCCCCCEEEccCCcccccCC-ccccCccC
Q 038699 42 GNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGP--IPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVG 118 (237)
Q Consensus 42 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~ 118 (237)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+..| ..+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 5778899999999999877888888999999999999988852 34567888999999999999886344 45788889
Q ss_pred ccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCC-CCccCCCccchhc
Q 038699 119 LQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD-GSVFSSSQSSAFT 197 (237)
Q Consensus 119 L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~~~l~ 197 (237)
|+.| ++++|.+++..+..+. ++|+.|++++|.++ .+|..+..+++|++|++++|++++..+. ...++.++.+++.
T Consensus 430 L~~L-~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVL-NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEE-ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred CCEE-ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 9999 9999988765554432 68999999999998 6666666889999999999999954444 4667888889999
Q ss_pred cCCcccc
Q 038699 198 NNKDLCG 204 (237)
Q Consensus 198 ~n~~l~~ 204 (237)
+|+..|.
T Consensus 506 ~N~~~c~ 512 (562)
T 3a79_B 506 DNPWDCT 512 (562)
T ss_dssp SCCBCCC
T ss_pred CCCcCCC
Confidence 9988774
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=182.35 Aligned_cols=178 Identities=26% Similarity=0.277 Sum_probs=134.6
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCcc-CccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEI-PAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN 79 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 79 (237)
+|||++|.+++..+..|..+++|++|++++|...+.+ +.+|..+++|++|++++|.+++..|+.|..+++|++|++++|
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 3889999999888888999999999999998655444 778899999999999999998778888999999999999999
Q ss_pred cCcCccccc--ccCCCCCCEEEccCCcccccCC-ccccCccCccccccCcCcccccccChhhcCC--CCCCeEeCcCCcC
Q 038699 80 RLSGPIPNQ--IGELRDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKL--TRLQSLNLSHNNL 154 (237)
Q Consensus 80 ~i~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~--~~L~~L~l~~n~l 154 (237)
.+.+..+.. +..+++|++|++++|.+.+..+ ..++.+++|+.| ++++|.+++..+..+..+ ++|+.|++++|.+
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L-~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI-DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE-EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE-ECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence 988655544 8889999999999998876544 568888999999 899888876666666554 5566666666655
Q ss_pred cCccCccccCCCC------CCEEEcCCCcCc
Q 038699 155 SGEIPASLSSMLS------LVAVNLSYNNLE 179 (237)
Q Consensus 155 ~~~~~~~~~~~~~------L~~L~l~~n~l~ 179 (237)
.+..+..+..+++ |++|++++|.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCc
Confidence 5444433333322 444444444433
No 62
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.5e-22 Score=164.22 Aligned_cols=185 Identities=23% Similarity=0.351 Sum_probs=97.6
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|+.|++++|.+
T Consensus 137 L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 137 LNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp EECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCC
T ss_pred EECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCC
Confidence 5667775544333 36667777777777776663332 56666777777777766632 22 45555555555555555
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
.+..+ +..+++|++|++++|.+++..+ +..+++|+.| ++++|.+++. ..+..+++|+.|++++|.+++. ..
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L-~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~ 282 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWL-EIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SV 282 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE-ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred CCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEE-ECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hh
Confidence 53322 4555555555555555543222 4555555555 5555555422 2344555555555555555432 23
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCCC-CccCCCccchhccCC
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPDG-SVFSSSQSSAFTNNK 200 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~~~l~~n~ 200 (237)
+..+++|++|++++|++++..+.. ..++.++.+++.+|+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 445555555555555554333321 234445555555553
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=6.3e-23 Score=178.03 Aligned_cols=184 Identities=24% Similarity=0.223 Sum_probs=164.9
Q ss_pred CEEecCCcCCCCC--CcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEEcc
Q 038699 1 MLGLAGNSIGGKI--PAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIP-EEIGGLLNLDSLDLS 77 (237)
Q Consensus 1 ~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~ 77 (237)
+|++++|++++.. +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 3788889888654 6678899999999999999995444 48999999999999999986655 578899999999999
Q ss_pred CCcCcCcccccccCCCCCCEEEccCCccc-ccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699 78 MNRLSGPIPNQIGELRDLRILNLSQNNLI-GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG 156 (237)
Q Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 156 (237)
+|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE-ECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 99999888888999999999999999997 5688899999999999 999999998889999999999999999999998
Q ss_pred ccCccccCCCCCCEEEcCCCcCcCCCCCCC
Q 038699 157 EIPASLSSMLSLVAVNLSYNNLEGPLPDGS 186 (237)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 186 (237)
..+..+..+++|++|++++|++++.+|...
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 878889999999999999999998877653
No 64
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.6e-22 Score=152.00 Aligned_cols=172 Identities=24% Similarity=0.240 Sum_probs=107.2
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
++.++++++.. |..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 12 v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 12 VECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 34555555533 2222 34667777777777655555566677777777777777654445566667777777777776
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
++..+..+..+++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL-RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE-ECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 64444456666777777777776665555556666666666 666666665555556666666666666665542
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCC
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPD 184 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~ 184 (237)
.+++|+.|++..|++++.+|.
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBC
T ss_pred --CCCCHHHHHHHHHhCCceeec
Confidence 345566666666666666654
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=2e-22 Score=173.28 Aligned_cols=102 Identities=31% Similarity=0.373 Sum_probs=76.6
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|++++..|..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++++|.+
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAF 102 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCcc
Confidence 677788877777777777888888888888887666777778888888888888777 45544 677888888888877
Q ss_pred cC-cccccccCCCCCCEEEccCCccc
Q 038699 82 SG-PIPNQIGELRDLRILNLSQNNLI 106 (237)
Q Consensus 82 ~~-~~~~~~~~l~~L~~L~l~~n~~~ 106 (237)
.+ ..|..++.+++|++|++++|.+.
T Consensus 103 ~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 103 DALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred ccccchhhhccCCcceEEEecCcccc
Confidence 75 35667777777777777777664
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=3.6e-22 Score=173.37 Aligned_cols=104 Identities=28% Similarity=0.281 Sum_probs=86.0
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++++|.
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFND 132 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSC
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCC
Confidence 3788899998888888889999999999999998777888888999999999999888 55555 78889999999988
Q ss_pred CcCc-ccccccCCCCCCEEEccCCcccc
Q 038699 81 LSGP-IPNQIGELRDLRILNLSQNNLIG 107 (237)
Q Consensus 81 i~~~-~~~~~~~l~~L~~L~l~~n~~~~ 107 (237)
+.+. .|..+..+++|++|++++|.+..
T Consensus 133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred ccccCchHhhcccCcccEEecCCCcccc
Confidence 8753 35678888888888888887653
No 67
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=2.7e-22 Score=154.08 Aligned_cols=153 Identities=24% Similarity=0.267 Sum_probs=114.5
Q ss_pred cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCC
Q 038699 24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN 103 (237)
Q Consensus 24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 103 (237)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46677777776 4454333 56777777777777666667777777777777777777666677777777888888888
Q ss_pred cccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcC
Q 038699 104 NLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180 (237)
Q Consensus 104 ~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 180 (237)
.++...+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLL-LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEE-ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 7775555566777888888 888888877777778888888888888888886666778888888888888888864
No 68
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=154.64 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=123.1
Q ss_pred cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCc-ccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccC
Q 038699 24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIP-EEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQ 102 (237)
Q Consensus 24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 102 (237)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57788888877 4554442 356788888888875533 4577888888888888888866666788888888888888
Q ss_pred CcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCC
Q 038699 103 NNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL 182 (237)
Q Consensus 103 n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 182 (237)
|.+++..+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|++|++++|++.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTL-MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEE-ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCccCHhHhcCCcCCCEE-ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 88887767778888888888 88888888777888888888999999999888777888888899999999999888654
Q ss_pred C
Q 038699 183 P 183 (237)
Q Consensus 183 ~ 183 (237)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=6.9e-23 Score=165.80 Aligned_cols=207 Identities=24% Similarity=0.211 Sum_probs=152.4
Q ss_pred EecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCc
Q 038699 3 GLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLS 82 (237)
Q Consensus 3 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 82 (237)
+++.+.+.......+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc
Confidence 455556655555556777899999999999998777889999999999999999985543 889999999999999876
Q ss_pred Ccccc----------------cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhh-cCCCCCC
Q 038699 83 GPIPN----------------QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL-GKLTRLQ 145 (237)
Q Consensus 83 ~~~~~----------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~-~~~~~L~ 145 (237)
+..+. ....+++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..+ ..+++|+
T Consensus 94 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 94 ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp EEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCC
T ss_pred cccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEE-ECCCCCCCcccHHHHhhccCcCC
Confidence 32110 01235567777777777776666677778888888 888888876666555 3678888
Q ss_pred eEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCCCC
Q 038699 146 SLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNAL 215 (237)
Q Consensus 146 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~~~ 215 (237)
.|++++|.+++. +. ...+++|++|++++|++++..+....++.++.+++.+|. +.+.+..+..+..+
T Consensus 173 ~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L 239 (317)
T 3o53_A 173 HLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNL 239 (317)
T ss_dssp EEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTC
T ss_pred EEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCC
Confidence 888888888744 32 234788888888888888766666667888888888874 44555444444443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.2e-22 Score=171.81 Aligned_cols=191 Identities=25% Similarity=0.219 Sum_probs=147.7
Q ss_pred CCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccc-----------
Q 038699 19 SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPN----------- 87 (237)
Q Consensus 19 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~----------- 87 (237)
.+++|+.|+|++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N 109 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence 34589999999999998888899999999999999999986554 88899999999999887632211
Q ss_pred -----cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhc-CCCCCCeEeCcCCcCcCccCcc
Q 038699 88 -----QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLG-KLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 88 -----~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
....+++|++|++++|.+++..|..+..+++|+.| ++++|.+++..+..+. .+++|+.|++++|.+++. +.
T Consensus 110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~- 186 (487)
T 3oja_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG- 186 (487)
T ss_dssp CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-
T ss_pred cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEE-ECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-
Confidence 01235677788888888877777778888888888 8888888877776665 678888888888888754 22
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCCCC
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNAL 215 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~~~ 215 (237)
...+++|++|++++|.+++.+|....++.+..+++.+| .+.+.++.+..+..+
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNL 239 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTC
T ss_pred cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCC
Confidence 33588899999999999877777677788888888887 456655554444433
No 71
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=6e-22 Score=163.09 Aligned_cols=175 Identities=27% Similarity=0.257 Sum_probs=142.5
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCcccc-CCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIG-NLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+++++++++. +|..+. +.++.|+|++|.+++..+..|. .+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 23 l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 23 LSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 6788888885 444442 4588999999999977777777 88999999999999987777788899999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhh---cCCCCCCeEeCcCCcCcCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQL---GKLTRLQSLNLSHNNLSGE 157 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~ 157 (237)
+....+..|..+++|++|++++|.+....+..+..+++|+.| ++++|.++...+..| ..+++|+.|++++|.++..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L-~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL-YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE-ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE-ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 986666678889999999999999987778889999999999 999999986555555 5688999999999999865
Q ss_pred cCccccCCCC--CCEEEcCCCcCcC
Q 038699 158 IPASLSSMLS--LVAVNLSYNNLEG 180 (237)
Q Consensus 158 ~~~~~~~~~~--L~~L~l~~n~l~~ 180 (237)
.+..+..++. ++.|++++|++..
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhhhccHhhcceEEecCCCccC
Confidence 5566777776 4789999998874
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.7e-21 Score=155.88 Aligned_cols=165 Identities=28% Similarity=0.449 Sum_probs=143.9
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|++++..+ +..+++|++|++++|.+.+. + .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.
T Consensus 67 ~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 67 GLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp EEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSC
T ss_pred EEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCc
Confidence 48999999997665 99999999999999999853 3 68899999999999999985 44 38899999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.| ++++|.+++..+ +..+++|+.|++++|.+++..
T Consensus 141 l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L-~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-- 211 (308)
T 1h6u_A 141 ITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL-KADDNKISDISP--LASLPNLIEVHLKNNQISDVS-- 211 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE-ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--
T ss_pred cCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEE-ECCCCccCcChh--hcCCCCCCEEEccCCccCccc--
Confidence 985433 8899999999999999985433 8899999999 999999985443 788999999999999998544
Q ss_pred cccCCCCCCEEEcCCCcCcC
Q 038699 161 SLSSMLSLVAVNLSYNNLEG 180 (237)
Q Consensus 161 ~~~~~~~L~~L~l~~n~l~~ 180 (237)
.+..+++|++|++++|++++
T Consensus 212 ~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 212 PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GGTTCTTCCEEEEEEEEEEC
T ss_pred cccCCCCCCEEEccCCeeec
Confidence 37899999999999999985
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=2.3e-22 Score=173.86 Aligned_cols=197 Identities=22% Similarity=0.222 Sum_probs=169.1
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
.|.++++++.+ |..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 10 c~~~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSC-CSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccc-cccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 46788888854 44443 7899999999999987788999999999999999999988888999999999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCccccc-CCccccCccCccccccCcCcc-cccccChhhcCCCCCCeEeCcCCcCcCccC
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGT-IPFQIGNLVGLQDLQDLSYNS-LTGEIPAQLGKLTRLQSLNLSHNNLSGEIP 159 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 159 (237)
.+..+..+..+++|++|++++|.+.+. .+..+..+++|+.| ++++|. +....+..+..+++|++|++++|.+++..|
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L-~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL-RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE-EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE-ECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 977777799999999999999999853 46789999999999 999998 554445689999999999999999998889
Q ss_pred ccccCCCCCCEEEcCCCcCcCCCCCC--CccCCCccchhccCCcccc
Q 038699 160 ASLSSMLSLVAVNLSYNNLEGPLPDG--SVFSSSQSSAFTNNKDLCG 204 (237)
Q Consensus 160 ~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~~l~~~~l~~n~~l~~ 204 (237)
..+..+++|++|++++|.+.. +|.. ..++.++.+++.+|. +.+
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~-l~~ 210 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTN-LAR 210 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCB-CTT
T ss_pred hhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCc-ccc
Confidence 999999999999999999863 3332 246788999998884 444
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=2.1e-21 Score=170.11 Aligned_cols=190 Identities=24% Similarity=0.241 Sum_probs=143.9
Q ss_pred CCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcc
Q 038699 6 GNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPI 85 (237)
Q Consensus 6 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 85 (237)
+-+++ .+|..+. +++++|+|++|.|++..+.+|..+++|++|+|++|.+++..++.|..+++|++|++++|.+++..
T Consensus 40 ~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 40 ELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 34555 3343332 46889999999998766778889999999999999988777778888999999999999988665
Q ss_pred cccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccc-cChhhcCCCCCCeEeCcCCcCcCccCccccC
Q 038699 86 PNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGE-IPAQLGKLTRLQSLNLSHNNLSGEIPASLSS 164 (237)
Q Consensus 86 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 164 (237)
+..|..+++|++|++++|.+++..+..++.+++|+.| ++++|.++.. .+..+..+++|+.|++++|.+++..+..+..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L-~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL-NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE-ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCee-ccccCccccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 6778889999999999998887666778889999999 9999988753 4677788889999999999888766666655
Q ss_pred CCC----CCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 165 MLS----LVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 165 ~~~----L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
+.+ ...++++.|++....+..........+.+.+|
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred hhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence 443 34688888888865555444334444444443
No 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=4e-21 Score=163.24 Aligned_cols=184 Identities=30% Similarity=0.430 Sum_probs=112.7
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277 (466)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCC
T ss_pred EEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCcc
Confidence 3444444443332 33444455555555544422 234555566666666665553322 55666666666666666
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.| ++++|.+.+..+ +..+++|+.|++++|.+++. ..
T Consensus 278 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L-~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 278 SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL-TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE-ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred Ccccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE-ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 64322 5666677777777776664332 5667777777 777777765443 56677777777777777643 45
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCc
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKD 201 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~ 201 (237)
+..+++|++|++++|++++..| ...++.++.+++.+|+.
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence 6777888888888888876666 56677788888877743
No 76
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=4.1e-21 Score=147.52 Aligned_cols=150 Identities=23% Similarity=0.300 Sum_probs=135.7
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
+++++++++.+ |..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 16 v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 67888999854 44443 6899999999999977777899999999999999999988899999999999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 155 (237)
+...+..|..+++|++|++++|.+.+..+..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL-SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE-ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 96655678899999999999999998888899999999999 99999999888888999999999999999886
No 77
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=8.3e-21 Score=161.26 Aligned_cols=195 Identities=28% Similarity=0.403 Sum_probs=150.8
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|.++.. +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.+
T Consensus 182 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 182 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc
Confidence 67788887754 347778888888888888875544 66788888888888888743 4577888899999998888
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
.+..+ +..+++|++|++++|.+.+..+ +..+++|+.| ++++|.+++..+ +..+++|+.|++++|.+++..+
T Consensus 256 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L-~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-- 326 (466)
T 1o6v_A 256 SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL-ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 326 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE-ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--
T ss_pred ccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeE-EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--
Confidence 85543 7788899999999998875433 7788899999 999998875443 7788999999999999986554
Q ss_pred ccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCcccccCCCCCCCCC
Q 038699 162 LSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGKVQGLRPCNA 214 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~~~~~~~C~~ 214 (237)
+..+++|++|++++|++++. +....++.++.+++.+|. +.+.+| +..|..
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~ 376 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQ-ISDLTP-LANLTR 376 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTT
T ss_pred hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCc-cCccch-hhcCCC
Confidence 67889999999999999854 666778889999998884 555554 344443
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.3e-21 Score=152.03 Aligned_cols=170 Identities=15% Similarity=0.194 Sum_probs=146.1
Q ss_pred CEEecCCc-CCCCCCcccCCCCCCcEEEccC-CcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCC---EEE
Q 038699 1 MLGLAGNS-IGGKIPAEIGSLSQLVELHLSS-NQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLD---SLD 75 (237)
Q Consensus 1 ~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~ 75 (237)
+|++++|+ ++.+.+..|..+++|++|++++ |.++...+..|..+++|++|++++|.+++ +|. +..+++|+ +|+
T Consensus 59 ~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~ 136 (239)
T 2xwt_C 59 RIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILE 136 (239)
T ss_dssp EEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEE
T ss_pred EEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEE
Confidence 38999997 9888888899999999999998 99997777889999999999999999984 666 88899998 999
Q ss_pred ccCC-cCcCcccccccCCCCCC-EEEccCCcccccCCccccCccCccccccCcCcc-cccccChhhcCC-CCCCeEeCcC
Q 038699 76 LSMN-RLSGPIPNQIGELRDLR-ILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNS-LTGEIPAQLGKL-TRLQSLNLSH 151 (237)
Q Consensus 76 l~~n-~i~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~ 151 (237)
+++| .+.+..+..+..+++|+ +|++++|.+....+..+.. ++|+.| ++++|. ++...+..|..+ ++|+.|++++
T Consensus 137 l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L-~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAV-YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp EESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEE-ECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred CCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEE-EcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 9999 88866666799999999 9999999998444444544 899999 999995 987778889999 9999999999
Q ss_pred CcCcCccCccccCCCCCCEEEcCCCc
Q 038699 152 NNLSGEIPASLSSMLSLVAVNLSYNN 177 (237)
Q Consensus 152 n~l~~~~~~~~~~~~~L~~L~l~~n~ 177 (237)
|.++. +|.. .+++|+.|+++++.
T Consensus 215 N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 215 TSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred Ccccc-CChh--HhccCceeeccCcc
Confidence 99984 4443 67899999998864
No 79
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.5e-20 Score=142.96 Aligned_cols=173 Identities=24% Similarity=0.235 Sum_probs=145.7
Q ss_pred cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCC
Q 038699 24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN 103 (237)
Q Consensus 24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 103 (237)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 57788888888 455433 468999999999999776677889999999999999999666667889999999999999
Q ss_pred cccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCC
Q 038699 104 NLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183 (237)
Q Consensus 104 ~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 183 (237)
.+++..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKEL-ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred cCCccCHhHhcCccCCCEE-EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 9997777778999999999 999999997777778999999999999999997777778999999999999999886544
Q ss_pred CCCccCCCccchhccCCcccccCC
Q 038699 184 DGSVFSSSQSSAFTNNKDLCGKVQ 207 (237)
Q Consensus 184 ~~~~~~~l~~~~l~~n~~l~~~~~ 207 (237)
.++.+.+..| .+.|.+|
T Consensus 166 ------~l~~L~~~~n-~~~g~ip 182 (208)
T 2o6s_A 166 ------GIRYLSEWIN-KHSGVVR 182 (208)
T ss_dssp ------TTHHHHHHHH-HCTTTBB
T ss_pred ------CHHHHHHHHH-hCCceee
Confidence 4566776666 3555544
No 80
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.8e-20 Score=153.13 Aligned_cols=185 Identities=27% Similarity=0.456 Sum_probs=77.6
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|+++...+ +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ .+. +..+++|++|++++|..
T Consensus 71 L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~ 144 (347)
T 4fmz_A 71 LNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHN 144 (347)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTT
T ss_pred EEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCC
Confidence 4444444443322 4444444444444444442 1 134444455555555444442 121 33444444444444432
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccC--------------------hhhcCC
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP--------------------AQLGKL 141 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~--------------------~~~~~~ 141 (237)
....+ .+..+++|++|++++|.+.+..+ +..+++|+.| ++++|.+.+..+ ..+..+
T Consensus 145 ~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L-~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 220 (347)
T 4fmz_A 145 LSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL-SLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANM 220 (347)
T ss_dssp CCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE-ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGC
T ss_pred ccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEE-EccCCcccccccccCCCccceeecccCCCCCCchhhcC
Confidence 21111 23344444444444444332211 3444444444 444444432211 003344
Q ss_pred CCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 142 TRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 142 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++....+++++.+++.+|
T Consensus 221 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSS
T ss_pred CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCC
Confidence 444444444444442221 4444555555555555542 233344445555555544
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=8.1e-21 Score=151.86 Aligned_cols=163 Identities=28% Similarity=0.389 Sum_probs=86.5
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|+++.. +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ + ..+..+++|++|++++|.+
T Consensus 51 L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 51 IIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGI 124 (291)
T ss_dssp EECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCC
T ss_pred EEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcC
Confidence 45555555543 124555555666666555553322 5555556666666555552 2 2255555566666665555
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
.+. ..+..+++|++|++++|.+.+. ..+..+++|+.| ++++|.+++..+ +..+++|+.|++++|.+++ .+ .
T Consensus 125 ~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L-~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~ 195 (291)
T 1h6t_A 125 SDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL-SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-A 195 (291)
T ss_dssp CCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE-ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-G
T ss_pred CCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE-EccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-h
Confidence 532 2355555566666655555533 345555555555 555555553332 4555555666666555553 22 2
Q ss_pred ccCCCCCCEEEcCCCcCc
Q 038699 162 LSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~ 179 (237)
+..+++|+.|++++|+++
T Consensus 196 l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GTTCTTCSEEEEEEEEEE
T ss_pred hccCCCCCEEECcCCccc
Confidence 555555666666655554
No 82
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=2e-20 Score=144.55 Aligned_cols=157 Identities=27% Similarity=0.322 Sum_probs=131.0
Q ss_pred CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEcc
Q 038699 22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLS 101 (237)
Q Consensus 22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 101 (237)
.-+.++.+++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3567888888887 5554443 789999999999987778888889999999999999885555667889999999999
Q ss_pred CCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCC
Q 038699 102 QNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGP 181 (237)
Q Consensus 102 ~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 181 (237)
+|.++...+..+..+++|+.| ++++|.++ ..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L-~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKEL-FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEE-ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeE-eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999887766778889999999 99999998 6677788899999999999999876667788899999999999999866
Q ss_pred CC
Q 038699 182 LP 183 (237)
Q Consensus 182 ~~ 183 (237)
.+
T Consensus 175 c~ 176 (229)
T 3e6j_A 175 CR 176 (229)
T ss_dssp BG
T ss_pred cc
Confidence 54
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=154.59 Aligned_cols=182 Identities=23% Similarity=0.250 Sum_probs=149.9
Q ss_pred CCCCcEEEccCCcCCCccCccc--cCCCCCCEEeccCCcccccCc----ccccCCCCCCEEEccCCcCcCcccccccCCC
Q 038699 20 LSQLVELHLSSNQLSGEIPAHI--GNLTELSTLSLNGNNISGQIP----EEIGGLLNLDSLDLSMNRLSGPIPNQIGELR 93 (237)
Q Consensus 20 l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 93 (237)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3569999999999998888887 889999999999999986444 3445789999999999999977778899999
Q ss_pred CCCEEEccCCccccc----CCccccCccCccccccCcCcccccccCh---hhcCCCCCCeEeCcCCcCcCccCccccCC-
Q 038699 94 DLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEIPA---QLGKLTRLQSLNLSHNNLSGEIPASLSSM- 165 (237)
Q Consensus 94 ~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~- 165 (237)
+|++|++++|.+.+. .+..+..+++|++| ++++|+++..... .+..+++|++|++++|.+++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL-ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC-BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEE-ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999987542 13345788999999 9999999732221 35778999999999999997767777776
Q ss_pred --CCCCEEEcCCCcCcCCCCCCCccCCCccchhccCCccccc
Q 038699 166 --LSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 166 --~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~~~ 205 (237)
++|++|++++|+++ .+|... +++++.+++.+|. +.+.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~-~~~L~~L~Ls~N~-l~~~ 287 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGL-PAKLRVLDLSSNR-LNRA 287 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCC-CSCCSCEECCSCC-CCSC
T ss_pred CcCcCCEEECCCCCCC-chhhhh-cCCCCEEECCCCc-CCCC
Confidence 69999999999999 566543 4899999999884 5553
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=4.7e-21 Score=153.24 Aligned_cols=171 Identities=23% Similarity=0.343 Sum_probs=148.4
Q ss_pred cCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCC
Q 038699 17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR 96 (237)
Q Consensus 17 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 96 (237)
+..+++|+.|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 34678999999999999844 4 488899999999999999954 44 8899999999999999985 34 489999999
Q ss_pred EEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCC
Q 038699 97 ILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYN 176 (237)
Q Consensus 97 ~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 176 (237)
+|++++|.+.+. ..+..+++|+.| ++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L-~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESL-YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEE-ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEE-EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 999999999854 468899999999 9999999855 578899999999999999996544 889999999999999
Q ss_pred cCcCCCCCCCccCCCccchhccCCc
Q 038699 177 NLEGPLPDGSVFSSSQSSAFTNNKD 201 (237)
Q Consensus 177 ~l~~~~~~~~~~~~l~~~~l~~n~~ 201 (237)
.+++ ++....++.+..+++.+|+.
T Consensus 189 ~i~~-l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 189 HISD-LRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCCB-CGGGTTCTTCSEEEEEEEEE
T ss_pred cCCC-ChhhccCCCCCEEECcCCcc
Confidence 9995 56677889999999999853
No 85
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1.3e-20 Score=165.11 Aligned_cols=184 Identities=26% Similarity=0.246 Sum_probs=144.7
Q ss_pred CCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccC-cccccCCCCCCEEEccCCcCcCcccccccCCCCCCEE
Q 038699 20 LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI-PEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRIL 98 (237)
Q Consensus 20 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 98 (237)
+.+++.+++..+.+. ..+..+..+++|+.+++..+...... ...+..+.+++.++++.|.+....+..+..++.|+.|
T Consensus 396 ~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 396 TISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp CSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred hhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence 334444444444333 23344556677777777766655332 3456778889999999999887777888889999999
Q ss_pred EccCCccc-ccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCc
Q 038699 99 NLSQNNLI-GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNN 177 (237)
Q Consensus 99 ~l~~n~~~-~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 177 (237)
++++|.+. ...|..+..+++|+.| ++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 475 ~Ls~N~~~~~~~~~~~~~l~~L~~L-~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred hhhhcccccccCchhhhhccccCEE-ECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 99999754 4567889999999999 999999998889999999999999999999998888889999999999999999
Q ss_pred CcCCCCCCC-cc-CCCccchhccCCccccc
Q 038699 178 LEGPLPDGS-VF-SSSQSSAFTNNKDLCGK 205 (237)
Q Consensus 178 l~~~~~~~~-~~-~~l~~~~l~~n~~l~~~ 205 (237)
+++..|... .+ .+++.+++.+||+.|..
T Consensus 554 l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 554 IMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 998877653 33 57899999999999853
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=6.3e-21 Score=156.97 Aligned_cols=178 Identities=27% Similarity=0.248 Sum_probs=148.5
Q ss_pred CcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCccccc-CCCCCCEEEccCCcCcCcccccccCCCCCCEEEcc
Q 038699 23 LVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIG-GLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLS 101 (237)
Q Consensus 23 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 101 (237)
-+.++++++.++ .+|..+. ..++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 368999999998 5665443 4689999999999977777787 99999999999999997767789999999999999
Q ss_pred CCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccc---cCCCCCCEEEcCCCcC
Q 038699 102 QNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASL---SSMLSLVAVNLSYNNL 178 (237)
Q Consensus 102 ~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l 178 (237)
+|.+....+..|..+++|+.| ++++|.+....+..|..+++|+.|++++|.++...+..+ ..+++|+.|++++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L-~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVL-LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEE-ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 999997777789999999999 999999998889999999999999999999996555555 5689999999999999
Q ss_pred cCCCCCC-CccCC--CccchhccCCcccc
Q 038699 179 EGPLPDG-SVFSS--SQSSAFTNNKDLCG 204 (237)
Q Consensus 179 ~~~~~~~-~~~~~--l~~~~l~~n~~l~~ 204 (237)
++..+.. ..++. +..+++.+|++.|.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccCC
Confidence 9544321 22333 35678888888774
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=4.1e-22 Score=162.17 Aligned_cols=196 Identities=17% Similarity=0.181 Sum_probs=141.9
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCc-cCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC-
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGE-IPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN- 79 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n- 79 (237)
|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 75 L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~ 153 (336)
T 2ast_B 75 FRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153 (336)
T ss_dssp EECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred EEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence 67788888766655 45688888888888888754 6667788888888888888887777777888888888888888
Q ss_pred cCcC-cccccccCCCCCCEEEccCC-ccccc-CCccccCcc-CccccccCcCcc--cc-cccChhhcCCCCCCeEeCcCC
Q 038699 80 RLSG-PIPNQIGELRDLRILNLSQN-NLIGT-IPFQIGNLV-GLQDLQDLSYNS--LT-GEIPAQLGKLTRLQSLNLSHN 152 (237)
Q Consensus 80 ~i~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~~l~~n~--~~-~~~~~~~~~~~~L~~L~l~~n 152 (237)
.+++ .++..+..+++|++|++++| .+++. .+..+..++ +|+.| ++++|. ++ ...+..+..+++|+.|++++|
T Consensus 154 ~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L-~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL-NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE-ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE-EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 5654 24555777888888888888 77643 455677777 88888 888883 43 244556667788888888888
Q ss_pred c-CcCccCccccCCCCCCEEEcCCCc-CcCC-CCCCCccCCCccchhccC
Q 038699 153 N-LSGEIPASLSSMLSLVAVNLSYNN-LEGP-LPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 153 ~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~~~l~~~~l~~n 199 (237)
. +++..+..+..+++|++|++++|. +... +.....+++++.+++.+|
T Consensus 233 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 233 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 7 666666777788888888888885 2211 112344666777776665
No 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=143.42 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=135.8
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccC-ccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIP-AHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN 79 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 79 (237)
++++++|+++. +|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 37899999986 455443 457899999999996644 55889999999999999999777778999999999999999
Q ss_pred cCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699 80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG 156 (237)
Q Consensus 80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 156 (237)
.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.| ++++|.+++..+..|..+++|+.|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL-SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE-ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE-ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 9997777889999999999999999998888999999999999 999999998889999999999999999999874
No 89
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.85 E-value=9.2e-21 Score=143.06 Aligned_cols=153 Identities=21% Similarity=0.340 Sum_probs=102.1
Q ss_pred CCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCE
Q 038699 18 GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRI 97 (237)
Q Consensus 18 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 97 (237)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44567777777777777 444 4667777777777777654 2 235667777777777777777555666777777777
Q ss_pred EEccCCcccccCCccccCccCccccccCcCcc-cccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCC
Q 038699 98 LNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNS-LTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYN 176 (237)
Q Consensus 98 L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 176 (237)
|++++|.+++..+..+..+++|+.| ++++|. ++ ..+ .+..+++|+.|++++|.+++ .+ .+..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L-~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSI-DLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEE-ECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEE-EccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 7777777766556667777777777 777776 54 333 46667777777777777764 33 5666777777777777
Q ss_pred cCc
Q 038699 177 NLE 179 (237)
Q Consensus 177 ~l~ 179 (237)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 664
No 90
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.4e-19 Score=153.38 Aligned_cols=178 Identities=22% Similarity=0.265 Sum_probs=99.3
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
|++++|.+++. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+++. + +..+++|++|++++|.+
T Consensus 47 L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 47 LDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp EECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCC
T ss_pred EEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcC
Confidence 66777777654 3 466677777777777776643 2 56666667777766666632 2 55666666666666666
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCC-------------------ccccCccCccccccCcCcccccccChhhcCCC
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIP-------------------FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLT 142 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~ 142 (237)
++ ++ +..+++|++|++++|.+++... -.+..+++|+.| ++++|.+++. + +..++
T Consensus 119 ~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L-~ls~n~l~~l-~--l~~l~ 191 (457)
T 3bz5_A 119 TK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL-DCSFNKITEL-D--VSQNK 191 (457)
T ss_dssp SC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEE-ECCSSCCCCC-C--CTTCT
T ss_pred Ce-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEE-ECCCCcccee-c--cccCC
Confidence 53 22 5555556666665555543200 023344455555 5555555432 2 44455
Q ss_pred CCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 143 RLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 143 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
+|+.|++++|.+++. .+..+++|++|++++|++++ +| ...++.++.+++.+|
T Consensus 192 ~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 192 LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSS
T ss_pred CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCC
Confidence 555555555555532 24455666666666666654 33 344555555555555
No 91
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.4e-19 Score=153.25 Aligned_cols=172 Identities=22% Similarity=0.199 Sum_probs=126.4
Q ss_pred cCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccc
Q 038699 8 SIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPN 87 (237)
Q Consensus 8 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 87 (237)
+.....+..+..+++|++|++++|.+++. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+++. +
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~- 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D- 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence 34455566778899999999999999954 5 689999999999999999954 3 88999999999999999954 3
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCC---------------
Q 038699 88 QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHN--------------- 152 (237)
Q Consensus 88 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n--------------- 152 (237)
+..+++|++|++++|.+++. + +..+++|+.| ++++|.+++. + +..+++|+.|++++|
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L-~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 173 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYL-NCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLT 173 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEE-ECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCC
T ss_pred -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEE-ECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCC
Confidence 88999999999999999853 3 7888999999 9999988753 2 444555555555555
Q ss_pred -------cCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 153 -------NLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 153 -------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
.+++ ++ +..+++|++|++++|++++. ....++.++.+++.+|
T Consensus 174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSS
T ss_pred EEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCC
Confidence 4442 22 44445555555555555532 2334555666666665
No 92
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=7.8e-20 Score=141.18 Aligned_cols=151 Identities=25% Similarity=0.263 Sum_probs=133.7
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
++.++++++.+ |..+ .++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+
T Consensus 24 v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 24 VDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 67788888744 4443 38899999999999988889999999999999999999866667789999999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGE 157 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 157 (237)
++..+..+..+++|++|++++|.+. .+|..+..+++|+.| ++++|.++...+..+..+++|+.|++++|.+...
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL-ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE-ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE-ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9776677899999999999999998 778889999999999 9999999977778899999999999999998743
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=3.1e-20 Score=152.19 Aligned_cols=176 Identities=19% Similarity=0.129 Sum_probs=108.5
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCcc-CccccCCCCCCE-EeccCCcccccCcccccCCCCCCEEEccCC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEI-PAHIGNLTELST-LSLNGNNISGQIPEEIGGLLNLDSLDLSMN 79 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 79 (237)
|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+ +.+|.+++++++ +.+.+|.++...++.|..+++|++|++++|
T Consensus 35 L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 35 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp EEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred EEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc
Confidence 778888888766677888888888888888876544 356777777665 455667777666777888888888888888
Q ss_pred cCcCcccccccCCCCCCEEEccC-CcccccCCccccCcc-CccccccCcCcccccccChhhcCCCCCCeEeCcC-CcCcC
Q 038699 80 RLSGPIPNQIGELRDLRILNLSQ-NNLIGTIPFQIGNLV-GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSH-NNLSG 156 (237)
Q Consensus 80 ~i~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~-~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~l~~ 156 (237)
.+....+..+....++..+++.+ +.+....+..+..+. .++.| ++++|+++...+..| ...+|+.+++.+ |.++.
T Consensus 115 ~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L-~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL-WLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEE 192 (350)
T ss_dssp CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE-ECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCC
T ss_pred ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh-ccccccccCCChhhc-cccchhHHhhccCCcccC
Confidence 87744333444444455555533 233323333344433 35555 666666664333333 234566666653 45553
Q ss_pred ccCccccCCCCCCEEEcCCCcCc
Q 038699 157 EIPASLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~n~l~ 179 (237)
..++.|..+++|++|++++|+++
T Consensus 193 i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 193 LPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp CCTTTTTTEECCSEEECTTSCCC
T ss_pred CCHHHhccCcccchhhcCCCCcC
Confidence 33445566666666666666665
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=9.8e-20 Score=158.85 Aligned_cols=166 Identities=28% Similarity=0.364 Sum_probs=134.3
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
.|++++|.+.... .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++ ++ .+..+++|+.|++++|.
T Consensus 47 ~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 47 QIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp CCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSC
T ss_pred EEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCC
Confidence 3678888887543 47888999999999998885544 7888999999999998874 33 67888999999999998
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.| ++++|.+.+..+ +..+++|+.|++++|.+++. .
T Consensus 121 l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L-~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~ 191 (605)
T 1m9s_A 121 ISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL-SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--R 191 (605)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE-ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--G
T ss_pred CCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE-ECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--h
Confidence 8853 4578889999999999988754 578888899999 999998886555 78888999999999988853 4
Q ss_pred cccCCCCCCEEEcCCCcCcCC
Q 038699 161 SLSSMLSLVAVNLSYNNLEGP 181 (237)
Q Consensus 161 ~~~~~~~L~~L~l~~n~l~~~ 181 (237)
.+..+++|+.|++++|++++.
T Consensus 192 ~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGTTCTTCSEEECCSEEEECC
T ss_pred HHccCCCCCEEEccCCcCcCC
Confidence 578889999999999988753
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.6e-21 Score=158.75 Aligned_cols=203 Identities=19% Similarity=0.206 Sum_probs=161.8
Q ss_pred CEEecCCcCCCC-CCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCC-ccccc-CcccccCCCCCCEEEcc
Q 038699 1 MLGLAGNSIGGK-IPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN-NISGQ-IPEEIGGLLNLDSLDLS 77 (237)
Q Consensus 1 ~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~ 77 (237)
+|++++|.++.. .+..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|+++
T Consensus 97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 388999998865 7777899999999999999999888888999999999999999 67742 56668889999999999
Q ss_pred CC-cCcCc-ccccccCCC-CCCEEEccCCc--cc-ccCCccccCccCccccccCcCcc-cccccChhhcCCCCCCeEeCc
Q 038699 78 MN-RLSGP-IPNQIGELR-DLRILNLSQNN--LI-GTIPFQIGNLVGLQDLQDLSYNS-LTGEIPAQLGKLTRLQSLNLS 150 (237)
Q Consensus 78 ~n-~i~~~-~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~~~~l~~L~~L~~l~~n~-~~~~~~~~~~~~~~L~~L~l~ 150 (237)
+| .+++. ++..+..++ +|++|++++|. ++ ...+..+..+++|+.| ++++|. +++..+..+..+++|+.|+++
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L-~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL-DLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE-ECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE-eCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 99 88753 566788899 99999999994 54 3456677889999999 999999 776777788999999999999
Q ss_pred CCc-CcCccCccccCCCCCCEEEcCCCcCcCCCCCCCcc-CCCccchhccCCcccccCCC
Q 038699 151 HNN-LSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVF-SSSQSSAFTNNKDLCGKVQG 208 (237)
Q Consensus 151 ~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~l~~~~l~~n~~l~~~~~~ 208 (237)
+|. +++.....+..+++|++|++++| ++.. ....+ ..+..+.+.+| .+.+..|.
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n-~l~~~~~~ 311 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCS-HFTTIARP 311 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCC-CSCCTTCS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecc-cCccccCC
Confidence 994 44443446888999999999999 3311 11122 33666666555 56666665
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.83 E-value=3.2e-20 Score=146.31 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=138.1
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
++++++.++... .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+
T Consensus 24 l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 24 QNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCcc
Confidence 456778887554 57788999999999999984 45 688999999999999999854 44 88999999999999999
Q ss_pred cCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
.+ ++. +.. ++|++|++++|.+++. ..+..+++|+.| ++++|++++. + .+..+++|+.|++++|.+++. ..
T Consensus 98 ~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L-~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~ 167 (263)
T 1xeu_A 98 KN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEIL-SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GG 167 (263)
T ss_dssp SC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEE-ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TT
T ss_pred CC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEE-ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HH
Confidence 85 443 333 8999999999999853 368899999999 9999999854 3 688899999999999999865 67
Q ss_pred ccCCCCCCEEEcCCCcCcCC
Q 038699 162 LSSMLSLVAVNLSYNNLEGP 181 (237)
Q Consensus 162 ~~~~~~L~~L~l~~n~l~~~ 181 (237)
+..+++|+.|++++|+++..
T Consensus 168 l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp STTCCCCCEEEEEEEEEECC
T ss_pred hccCCCCCEEeCCCCcccCC
Confidence 88999999999999999855
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=2.8e-20 Score=162.30 Aligned_cols=181 Identities=24% Similarity=0.369 Sum_probs=153.9
Q ss_pred ecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcC
Q 038699 4 LAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSG 83 (237)
Q Consensus 4 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 83 (237)
+..+.+....+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|++++|.+.+
T Consensus 28 l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 28 LKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp TTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence 44455554433 4567899999999999984 44 58899999999999999985443 8899999999999999984
Q ss_pred cccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcccc
Q 038699 84 PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLS 163 (237)
Q Consensus 84 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 163 (237)
++ .+..+++|++|++++|.+.+. ..+..+++|+.| ++++|.+.+. ..+..+++|+.|++++|.+++..| +.
T Consensus 102 -l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L-~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~ 172 (605)
T 1m9s_A 102 -LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL-YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 172 (605)
T ss_dssp -CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEE-ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT
T ss_pred -Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEE-ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc
Confidence 34 688999999999999999853 468899999999 9999999855 678899999999999999996555 88
Q ss_pred CCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccCC
Q 038699 164 SMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNK 200 (237)
Q Consensus 164 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~ 200 (237)
.+++|+.|+|++|++++ ++....++++..+++.+|+
T Consensus 173 ~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEE
T ss_pred cCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCc
Confidence 99999999999999995 5777788999999999885
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=6.9e-22 Score=162.73 Aligned_cols=197 Identities=23% Similarity=0.288 Sum_probs=95.5
Q ss_pred EEecCCcCCCCCC----cccCCCC-CCcEEEccCCcCCCccCccccCC-----CCCCEEeccCCcccccCccc----ccC
Q 038699 2 LGLAGNSIGGKIP----AEIGSLS-QLVELHLSSNQLSGEIPAHIGNL-----TELSTLSLNGNNISGQIPEE----IGG 67 (237)
Q Consensus 2 L~l~~n~~~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~----~~~ 67 (237)
|||++|.++...+ ..|..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+.. +..
T Consensus 27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 106 (362)
T 3goz_A 27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA 106 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHh
Confidence 4555555554444 4444455 55555555555554434333332 55555555555555433332 222
Q ss_pred C-CCCCEEEccCCcCcCcccccc----cC-CCCCCEEEccCCcccccC----CccccCcc-CccccccCcCcccccccCh
Q 038699 68 L-LNLDSLDLSMNRLSGPIPNQI----GE-LRDLRILNLSQNNLIGTI----PFQIGNLV-GLQDLQDLSYNSLTGEIPA 136 (237)
Q Consensus 68 l-~~L~~L~l~~n~i~~~~~~~~----~~-l~~L~~L~l~~n~~~~~~----~~~~~~l~-~L~~L~~l~~n~~~~~~~~ 136 (237)
+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+.. +..+..++ +|+.| ++++|.+++..+.
T Consensus 107 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~n~l~~~~~~ 185 (362)
T 3goz_A 107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL-NLRGNNLASKNCA 185 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE-ECTTSCGGGSCHH
T ss_pred CCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe-eecCCCCchhhHH
Confidence 2 455555555555553333222 22 235566666665555322 22223333 56666 6666666544432
Q ss_pred h----hcCC-CCCCeEeCcCCcCcCc----cCccccC-CCCCCEEEcCCCcCcCCCC-----CCCccCCCccchhccC
Q 038699 137 Q----LGKL-TRLQSLNLSHNNLSGE----IPASLSS-MLSLVAVNLSYNNLEGPLP-----DGSVFSSSQSSAFTNN 199 (237)
Q Consensus 137 ~----~~~~-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~l~~n~l~~~~~-----~~~~~~~l~~~~l~~n 199 (237)
. +... ++|+.|++++|.+++. ++..+.. .++|++|++++|++++..+ .....+.++.+++.+|
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 2 2233 3666666666666542 2333333 3466666666666654322 1133455666666655
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=7.4e-22 Score=163.83 Aligned_cols=130 Identities=23% Similarity=0.265 Sum_probs=63.1
Q ss_pred CCCCEEEccCCcCc-Cccc---ccccCCCCCCEEEccCCcccc-----cCCccccCccCccccccCcCcccc----cccC
Q 038699 69 LNLDSLDLSMNRLS-GPIP---NQIGELRDLRILNLSQNNLIG-----TIPFQIGNLVGLQDLQDLSYNSLT----GEIP 135 (237)
Q Consensus 69 ~~L~~L~l~~n~i~-~~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~~l~~n~~~----~~~~ 135 (237)
++|++|++++|.++ ..++ ..+..+++|++|++++|.+.. ..+..+..+++|+.| ++++|.++ ...+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L-~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL-DLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE-ECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEE-ECcCCCCCcHHHHHHH
Confidence 44555555555443 1122 233345555555555555441 122244555555555 55555553 2334
Q ss_pred hhhcCCCCCCeEeCcCCcCcCc----cCccccC--CCCCCEEEcCCCcCcC----CCCCC--CccCCCccchhccC
Q 038699 136 AQLGKLTRLQSLNLSHNNLSGE----IPASLSS--MLSLVAVNLSYNNLEG----PLPDG--SVFSSSQSSAFTNN 199 (237)
Q Consensus 136 ~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~--~~~L~~L~l~~n~l~~----~~~~~--~~~~~l~~~~l~~n 199 (237)
..+..+++|+.|++++|.+++. ++..+.. +++|++|++++|.+++ .+|.. ..++.++.+++.+|
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 4455555566666666655532 2333322 5566666666666554 23322 12455556665555
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=1.9e-21 Score=160.13 Aligned_cols=198 Identities=24% Similarity=0.217 Sum_probs=124.0
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccC----ccccCCC-CCCEEeccCCcccccCcccccCC-----CCC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIP----AHIGNLT-ELSTLSLNGNNISGQIPEEIGGL-----LNL 71 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L 71 (237)
+++++|++++.+|..+...++|++|++++|.+++..+ ..|..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677777777766666666667777777777775544 5666676 77777777777776555555543 777
Q ss_pred CEEEccCCcCcCccccc----ccCC-CCCCEEEccCCcccccCCcccc----C-ccCccccccCcCcccccccCh----h
Q 038699 72 DSLDLSMNRLSGPIPNQ----IGEL-RDLRILNLSQNNLIGTIPFQIG----N-LVGLQDLQDLSYNSLTGEIPA----Q 137 (237)
Q Consensus 72 ~~L~l~~n~i~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~~----~-l~~L~~L~~l~~n~~~~~~~~----~ 137 (237)
++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. . ..+|+.| ++++|.+++.... .
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL-NLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE-ECTTSCGGGSCHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE-EccCCcCCHHHHHHHHHH
Confidence 77777777776544443 3334 6777777777777655443332 2 2477777 7777777643332 2
Q ss_pred hcCCC-CCCeEeCcCCcCcCccCcc----ccCC-CCCCEEEcCCCcCcCCC----CC-CCc-cCCCccchhccCC
Q 038699 138 LGKLT-RLQSLNLSHNNLSGEIPAS----LSSM-LSLVAVNLSYNNLEGPL----PD-GSV-FSSSQSSAFTNNK 200 (237)
Q Consensus 138 ~~~~~-~L~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~----~~-~~~-~~~l~~~~l~~n~ 200 (237)
+...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.++... +. ... .+.++.+++.+|.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 34444 7777777777776554433 3334 47777777777776421 11 111 2367777777763
No 101
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.82 E-value=6.8e-20 Score=137.76 Aligned_cols=112 Identities=28% Similarity=0.333 Sum_probs=56.6
Q ss_pred CCCEEEccCCcCcCcccc-cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEe
Q 038699 70 NLDSLDLSMNRLSGPIPN-QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLN 148 (237)
Q Consensus 70 ~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~ 148 (237)
++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|+.| ++++|.+++..+..|..+++|+.|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL-QLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE-ECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE-ECCCCcCCccCHHHhcCCCCCCEEE
Confidence 444444444444432222 24444445555555554444444444555555555 5555555544444455555555555
Q ss_pred CcCCcCcCccCccccCCCCCCEEEcCCCcCcCCC
Q 038699 149 LSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPL 182 (237)
Q Consensus 149 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 182 (237)
+++|.+++..|..+..+++|++|++++|++++..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 5555555544555555556666666666655433
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=1.6e-19 Score=136.19 Aligned_cols=147 Identities=19% Similarity=0.347 Sum_probs=126.3
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|+++. ++ .+..+++|++|++++|.++. . ..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 48 ~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 48 YITLANINVTD-LT-GIEYAHNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp EEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred EEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 37899999984 44 68899999999999997763 3 468899999999999999997788889999999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCc-ccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNN-LIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG 156 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 156 (237)
+++..+..+..+++|++|++++|. +. ..+ .+..+++|+.| ++++|.+++. + .+..+++|+.|++++|.+.+
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L-~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSL-NIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEE-ECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEE-ECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 997778889999999999999998 65 444 68999999999 9999999853 3 67889999999999999863
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=5.3e-19 Score=152.93 Aligned_cols=175 Identities=23% Similarity=0.305 Sum_probs=138.8
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|++++ +|..+ .++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++++|.
T Consensus 63 ~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 63 ELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp EEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSC
T ss_pred EEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCc
Confidence 38899999987 55544 378999999999999 566 457899999999999985 666 555 99999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
+++ +|. .+++|+.|++++|.+++ +|. .+++|+.| ++++|.+++ +|. +. ++|+.|++++|.|+ .+|.
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L-~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVL-SVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE-ECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred CCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEE-ECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh
Confidence 985 565 68899999999999985 554 57889999 999999985 555 54 89999999999998 5665
Q ss_pred cccCCCCC-------CEEEcCCCcCcCCCCCCCccCCCccchhccCCccc
Q 038699 161 SLSSMLSL-------VAVNLSYNNLEGPLPDGSVFSSSQSSAFTNNKDLC 203 (237)
Q Consensus 161 ~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n~~l~ 203 (237)
+.. +| +.|++++|+++...+....++.+..+++.+|+.-+
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 544 77 99999999999544445668889999999886433
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=1.7e-21 Score=161.58 Aligned_cols=199 Identities=21% Similarity=0.220 Sum_probs=146.8
Q ss_pred CEEecCCcCCCCCC----cccCCCCCCcEEEccCCcCC---CccCccc-------cCCCCCCEEeccCCcccc----cCc
Q 038699 1 MLGLAGNSIGGKIP----AEIGSLSQLVELHLSSNQLS---GEIPAHI-------GNLTELSTLSLNGNNISG----QIP 62 (237)
Q Consensus 1 ~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~i~---~~~~~~~-------~~l~~L~~L~l~~n~l~~----~~~ 62 (237)
+|+|++|+++...+ ..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++|.+++ .++
T Consensus 36 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 115 (386)
T 2ca6_A 36 EIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115 (386)
T ss_dssp EEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHH
Confidence 37888888886533 44778889999999886443 3334333 678899999999998885 356
Q ss_pred ccccCCCCCCEEEccCCcCcCccccc----ccCC---------CCCCEEEccCCcccc-cCC---ccccCccCccccccC
Q 038699 63 EEIGGLLNLDSLDLSMNRLSGPIPNQ----IGEL---------RDLRILNLSQNNLIG-TIP---FQIGNLVGLQDLQDL 125 (237)
Q Consensus 63 ~~~~~l~~L~~L~l~~n~i~~~~~~~----~~~l---------~~L~~L~l~~n~~~~-~~~---~~~~~l~~L~~L~~l 125 (237)
..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.++. ..+ ..+..+++|+.| ++
T Consensus 116 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L-~L 194 (386)
T 2ca6_A 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV-KM 194 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE-EC
T ss_pred HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE-EC
Confidence 67788889999999999886433332 3334 889999999998862 333 356678889999 99
Q ss_pred cCccccc-----ccChhhcCCCCCCeEeCcCCcCc----CccCccccCCCCCCEEEcCCCcCcCC----CCCC---CccC
Q 038699 126 SYNSLTG-----EIPAQLGKLTRLQSLNLSHNNLS----GEIPASLSSMLSLVAVNLSYNNLEGP----LPDG---SVFS 189 (237)
Q Consensus 126 ~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~---~~~~ 189 (237)
++|.+.. ..+..+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+++. ++.. ...+
T Consensus 195 ~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~ 274 (386)
T 2ca6_A 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274 (386)
T ss_dssp CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC
T ss_pred cCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCC
Confidence 9998863 23336778899999999999985 35677888899999999999998754 2222 2367
Q ss_pred CCccchhccCC
Q 038699 190 SSQSSAFTNNK 200 (237)
Q Consensus 190 ~l~~~~l~~n~ 200 (237)
+++.+++.+|.
T Consensus 275 ~L~~L~L~~n~ 285 (386)
T 2ca6_A 275 GLQTLRLQYNE 285 (386)
T ss_dssp CCCEEECCSSC
T ss_pred CeEEEECcCCc
Confidence 78888888874
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=6e-19 Score=139.00 Aligned_cols=170 Identities=22% Similarity=0.258 Sum_probs=142.7
Q ss_pred CCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEE
Q 038699 19 SLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRIL 98 (237)
Q Consensus 19 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 98 (237)
.+.+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3456777889999998544 5788999999999999998 455 68899999999999999995544 8999999999
Q ss_pred EccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcC
Q 038699 99 NLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178 (237)
Q Consensus 99 ~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 178 (237)
++++|.+.+. +. +.. ++|+.| ++++|.+++. ..+..+++|+.|++++|.+++. + .+..+++|++|++++|++
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L-~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRL-FLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEE-ECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEE-EccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 9999999853 33 233 899999 9999999854 3588999999999999999854 3 688999999999999999
Q ss_pred cCCCCCCCccCCCccchhccCCccc
Q 038699 179 EGPLPDGSVFSSSQSSAFTNNKDLC 203 (237)
Q Consensus 179 ~~~~~~~~~~~~l~~~~l~~n~~l~ 203 (237)
++. +....++.++.+++.+|+..+
T Consensus 163 ~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 163 TNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred cch-HHhccCCCCCEEeCCCCcccC
Confidence 966 667788899999999986443
No 106
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=9.2e-19 Score=131.55 Aligned_cols=129 Identities=27% Similarity=0.362 Sum_probs=83.6
Q ss_pred cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcc-cccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccC
Q 038699 24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPE-EIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQ 102 (237)
Q Consensus 24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 102 (237)
+.++++++.++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666665 4444332 2666666666666644333 356666777777777776655566666677777777777
Q ss_pred CcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699 103 NNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG 156 (237)
Q Consensus 103 n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 156 (237)
|.+.+..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTL-NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEE-ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEE-ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 77666666666667777777 777777766666667777777777777777664
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.9e-18 Score=149.42 Aligned_cols=158 Identities=25% Similarity=0.369 Sum_probs=132.2
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|+|++|+++ .+| ..+++|+.|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.
T Consensus 84 ~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 84 VLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQ 151 (571)
T ss_dssp EEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred EEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCc
Confidence 4899999999 455 457999999999999996 666 655 99999999999995 665 68999999999999
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCC-------CeEeCcCCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRL-------QSLNLSHNN 153 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L-------~~L~l~~n~ 153 (237)
+++ +|. .+++|++|++++|.+++ +|. +. ++|+.| ++++|.++ .+|. +.. +| +.|++++|.
T Consensus 152 l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L-~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 152 LTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEAL-DVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEE-ECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred cCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEE-ECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence 995 564 67899999999999985 565 55 899999 99999998 5555 543 67 999999999
Q ss_pred CcCccCccccCCCCCCEEEcCCCcCcCCCCC
Q 038699 154 LSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 184 (237)
Q Consensus 154 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 184 (237)
|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 99 6788888899999999999999876554
No 108
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.3e-17 Score=145.88 Aligned_cols=75 Identities=27% Similarity=0.300 Sum_probs=44.0
Q ss_pred cCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchh
Q 038699 117 VGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAF 196 (237)
Q Consensus 117 ~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l 196 (237)
++|+.| ++++|.+++ .+ ..+++|+.|++++|.++ .+|. .+++|++|++++|+++..++....++++..+++
T Consensus 221 ~~L~~L-~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKEL-IVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEE-ECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEEC
T ss_pred CCCCEE-EccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEe
Confidence 445555 555555552 22 23456666666666666 3333 456677777777777733333455666777777
Q ss_pred ccCC
Q 038699 197 TNNK 200 (237)
Q Consensus 197 ~~n~ 200 (237)
.+|+
T Consensus 292 ~~N~ 295 (622)
T 3g06_A 292 EGNP 295 (622)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 7775
No 109
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=129.20 Aligned_cols=128 Identities=22% Similarity=0.336 Sum_probs=80.9
Q ss_pred CEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcC
Q 038699 48 STLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSY 127 (237)
Q Consensus 48 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~ 127 (237)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|+.| ++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L-~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL-ILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE-ECCC
Confidence 34555555555 3343322 35666666666665 444556666666666666666665555556666666666 6666
Q ss_pred cccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcC
Q 038699 128 NSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEG 180 (237)
Q Consensus 128 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 180 (237)
|.++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++.+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 66665666667777777777777777775555567777788888888887764
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=2.6e-17 Score=143.87 Aligned_cols=51 Identities=29% Similarity=0.278 Sum_probs=26.7
Q ss_pred CCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 142 TRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 142 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
++|+.|++++|.+++ +| ..+++|++|++++|.++ .+|. .++++..+++.+|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N 271 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRN 271 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSS
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCC
Confidence 445555555555542 23 23455666666666665 3333 3455666666655
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=4.3e-18 Score=125.01 Aligned_cols=132 Identities=23% Similarity=0.264 Sum_probs=68.7
Q ss_pred CCCCEEeccCCccc-ccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccc
Q 038699 45 TELSTLSLNGNNIS-GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQ 123 (237)
Q Consensus 45 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 123 (237)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L- 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL- 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE-
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE-
Confidence 34455555555444 33344444445555555555554432 344445555555555555544344444445555555
Q ss_pred cCcCccccccc-ChhhcCCCCCCeEeCcCCcCcCccC---ccccCCCCCCEEEcCCCcCc
Q 038699 124 DLSYNSLTGEI-PAQLGKLTRLQSLNLSHNNLSGEIP---ASLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 124 ~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~ 179 (237)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555554321 1445556666666666666663333 35666666777777666665
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=3.9e-17 Score=138.22 Aligned_cols=119 Identities=25% Similarity=0.374 Sum_probs=48.5
Q ss_pred CCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEcc
Q 038699 22 QLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLS 101 (237)
Q Consensus 22 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 101 (237)
+|++|++++|.+++ +| .|..+++|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .++.+++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 34444444444442 23 24444444444444444442 2221 1244444444444442 22 24444444444444
Q ss_pred CCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699 102 QNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155 (237)
Q Consensus 102 ~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 155 (237)
+|.+.+ .|.. .++|+.| ++++|.++ ..| .+..+++|+.|++++|.++
T Consensus 204 ~N~l~~-l~~~---~~~L~~L-~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 204 NNSLKK-LPDL---PLSLESI-VAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEE-ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred CCcCCc-CCCC---cCcccEE-ECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 444432 1211 1234444 44444444 222 2444444555555544444
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=5.3e-18 Score=138.93 Aligned_cols=198 Identities=18% Similarity=0.159 Sum_probs=153.4
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccC-cccccCCCCCCE-EEccCC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQI-PEEIGGLLNLDS-LDLSMN 79 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~-L~l~~n 79 (237)
++.++++++. +|..+ .+++++|+|++|+|+...+++|.++++|++|+|++|.+.+.+ +..|.+++++++ +.+..|
T Consensus 14 v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 5677888884 45544 367999999999999666678999999999999999986544 457888998776 566778
Q ss_pred cCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcC-cccccccChhhcCCC-CCCeEeCcCCcCcCc
Q 038699 80 RLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSY-NSLTGEIPAQLGKLT-RLQSLNLSHNNLSGE 157 (237)
Q Consensus 80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~ 157 (237)
.+....+..|..+++|++|++++|.+....+..+....++..+ ++.+ +.+....+..|..+. .++.|++++|.|+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l-~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~- 168 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL-DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE-EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhh-hhccccccccccccchhhcchhhhhhccccccccC-
Confidence 9987777889999999999999999986666666677777788 7755 567766666777765 68899999999995
Q ss_pred cCccccCCCCCCEEEcCC-CcCcCCCCCC--CccCCCccchhccCCcccccC
Q 038699 158 IPASLSSMLSLVAVNLSY-NNLEGPLPDG--SVFSSSQSSAFTNNKDLCGKV 206 (237)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~-n~l~~~~~~~--~~~~~l~~~~l~~n~~l~~~~ 206 (237)
++.......+|+++++++ |.++ .+|.. ..+++++.+++++|. +...+
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~-l~~lp 218 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTR-IHSLP 218 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSC-CCCCC
T ss_pred CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCC-cCccC
Confidence 444444567899999985 6666 55542 567889999999884 55443
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=3.2e-18 Score=125.70 Aligned_cols=137 Identities=26% Similarity=0.258 Sum_probs=113.7
Q ss_pred CCCCcEEEccCCcCC-CccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEE
Q 038699 20 LSQLVELHLSSNQLS-GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRIL 98 (237)
Q Consensus 20 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 98 (237)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 477999999999987 56777788899999999999998854 778889999999999999987677777789999999
Q ss_pred EccCCcccccC-CccccCccCccccccCcCcccccccC---hhhcCCCCCCeEeCcCCcCcCccCc
Q 038699 99 NLSQNNLIGTI-PFQIGNLVGLQDLQDLSYNSLTGEIP---AQLGKLTRLQSLNLSHNNLSGEIPA 160 (237)
Q Consensus 99 ~l~~n~~~~~~-~~~~~~l~~L~~L~~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~ 160 (237)
++++|.+.+.. +..+..+++|+.| ++++|.+.+..+ ..+..+++|+.|++++|.+. ..|+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L-~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSL-DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEE-ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEE-EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999987542 2678889999999 999999985555 47888999999999999887 4443
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=3.2e-17 Score=138.73 Aligned_cols=136 Identities=25% Similarity=0.373 Sum_probs=93.2
Q ss_pred CEEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc
Q 038699 1 MLGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR 80 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 80 (237)
+|++++|++++ +| .|..+++|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .+..+++|++|++++|.
T Consensus 135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc
Confidence 37889999986 55 58999999999999999884 5543 3588888998888884 55 57788888888888888
Q ss_pred CcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699 81 LSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155 (237)
Q Consensus 81 i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 155 (237)
+.+ +|.. .++|++|++++|.+. .+| .+..+++|+.| ++++|++++ .+. .+++|+.|++++|.++
T Consensus 207 l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L-~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 207 LKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTI-YADNNLLKT-LPD---LPPSLEALNVRDNYLT 270 (454)
T ss_dssp CSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEE-ECCSSCCSS-CCS---CCTTCCEEECCSSCCS
T ss_pred CCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEE-ECCCCcCCc-ccc---cccccCEEECCCCccc
Confidence 774 3332 246777777777666 444 36666677777 777766653 222 1244555555555544
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=5.6e-21 Score=165.67 Aligned_cols=160 Identities=25% Similarity=0.232 Sum_probs=95.7
Q ss_pred CCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCc-------------ccccCcccccCCC---------------
Q 038699 18 GSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNN-------------ISGQIPEEIGGLL--------------- 69 (237)
Q Consensus 18 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~--------------- 69 (237)
..+++|+.|+|++|.++ .+|..+..+++|+.|++++|. ..+..|..+..++
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34566666666666665 556566666666666655443 1222232332222
Q ss_pred -----------------CCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCccccc
Q 038699 70 -----------------NLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTG 132 (237)
Q Consensus 70 -----------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~ 132 (237)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.| ++++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L-~Ls~N~l~~ 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL-QASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEE-ECCSSCCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEE-ECCCCCCCC
Confidence 46666666666663 444 666666666666666666 556666666666666 666666663
Q ss_pred ccChhhcCCCCCCeEeCcCCcCcCcc-CccccCCCCCCEEEcCCCcCcCCCCC
Q 038699 133 EIPAQLGKLTRLQSLNLSHNNLSGEI-PASLSSMLSLVAVNLSYNNLEGPLPD 184 (237)
Q Consensus 133 ~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~ 184 (237)
+| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|++++.+|.
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 34 5666666666666666666544 66666666666666666666655443
No 117
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=3.1e-20 Score=157.24 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=40.8
Q ss_pred EEecCCcCCCCC----CcccCCCCCCcEEEccCCcCCCccCcccc-----CCCCCCEEeccCCccccc----CcccccCC
Q 038699 2 LGLAGNSIGGKI----PAEIGSLSQLVELHLSSNQLSGEIPAHIG-----NLTELSTLSLNGNNISGQ----IPEEIGGL 68 (237)
Q Consensus 2 L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l 68 (237)
|++++|+++... +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+
T Consensus 147 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred EECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence 566666666533 33444556666666666665533222221 234555555555555432 23344444
Q ss_pred CCCCEEEccCCcCc
Q 038699 69 LNLDSLDLSMNRLS 82 (237)
Q Consensus 69 ~~L~~L~l~~n~i~ 82 (237)
++|++|++++|.+.
T Consensus 227 ~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 227 ASLRELALGSNKLG 240 (461)
T ss_dssp TTCCEEECCSSBCH
T ss_pred CCccEEeccCCcCC
Confidence 55555555555443
No 118
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=1.4e-19 Score=153.14 Aligned_cols=197 Identities=19% Similarity=0.142 Sum_probs=101.0
Q ss_pred EEecCCcCCCCCCcccC-----CCCCCcEEEccCCcCCCc----cCccccCCCCCCEEeccCCcccccC-----cccccC
Q 038699 2 LGLAGNSIGGKIPAEIG-----SLSQLVELHLSSNQLSGE----IPAHIGNLTELSTLSLNGNNISGQI-----PEEIGG 67 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~ 67 (237)
|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..
T Consensus 175 L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 254 (461)
T 1z7x_W 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred EECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcC
Confidence 56666666544333332 244666666666666642 3444555666666666666655321 112224
Q ss_pred CCCCCEEEccCCcCcCc----ccccccCCCCCCEEEccCCcccccCCccccC-----ccCccccccCcCcccccc----c
Q 038699 68 LLNLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNLIGTIPFQIGN-----LVGLQDLQDLSYNSLTGE----I 134 (237)
Q Consensus 68 l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----l~~L~~L~~l~~n~~~~~----~ 134 (237)
+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|+.| ++++|.+++. .
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L-~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL-WVKSCSFTAACCSHF 333 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE-ECTTSCCBGGGHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee-EcCCCCCchHHHHHH
Confidence 56666666666666532 3444555666666666666654332222221 1455666 6666655533 2
Q ss_pred ChhhcCCCCCCeEeCcCCcCcCccCccccC-----CCCCCEEEcCCCcCcC----CCCC-CCccCCCccchhccC
Q 038699 135 PAQLGKLTRLQSLNLSHNNLSGEIPASLSS-----MLSLVAVNLSYNNLEG----PLPD-GSVFSSSQSSAFTNN 199 (237)
Q Consensus 135 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~----~~~~-~~~~~~l~~~~l~~n 199 (237)
+..+..+++|+.|++++|.+++..+..+.. .++|++|++++|++++ .++. ....++++.+++.+|
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 333444556666666666555433332221 4456666666665552 2222 123455555555555
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=1e-17 Score=120.55 Aligned_cols=108 Identities=28% Similarity=0.316 Sum_probs=59.3
Q ss_pred CCCcEEEccCCcCC-CccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEE
Q 038699 21 SQLVELHLSSNQLS-GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILN 99 (237)
Q Consensus 21 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 99 (237)
++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 44555556666666666666666533 4455566666666666666544555555556666666
Q ss_pred ccCCccccc-CCccccCccCccccccCcCcccc
Q 038699 100 LSQNNLIGT-IPFQIGNLVGLQDLQDLSYNSLT 131 (237)
Q Consensus 100 l~~n~~~~~-~~~~~~~l~~L~~L~~l~~n~~~ 131 (237)
+++|.+++. .+..+..+++|+.| ++++|.++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L-~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSL-DLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEE-ECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEE-eCcCCccc
Confidence 666555432 12334444444444 44444444
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=8.7e-18 Score=120.94 Aligned_cols=129 Identities=20% Similarity=0.224 Sum_probs=100.9
Q ss_pred CCCCCEEeccCCccc-ccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCcccc
Q 038699 44 LTELSTLSLNGNNIS-GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDL 122 (237)
Q Consensus 44 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 122 (237)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367888899888887 56777778888888888888888854 667788888888888888886677777778888888
Q ss_pred ccCcCcccccc-cChhhcCCCCCCeEeCcCCcCcCccC---ccccCCCCCCEEEcCC
Q 038699 123 QDLSYNSLTGE-IPAQLGKLTRLQSLNLSHNNLSGEIP---ASLSSMLSLVAVNLSY 175 (237)
Q Consensus 123 ~~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~ 175 (237)
++++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 -~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 -NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888753 23667788888888888888875544 4677788888888753
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=7.4e-17 Score=119.44 Aligned_cols=133 Identities=25% Similarity=0.273 Sum_probs=85.6
Q ss_pred CEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcC
Q 038699 48 STLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSY 127 (237)
Q Consensus 48 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~ 127 (237)
+.++++++.++ .+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.| ++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL-YLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE-ECCS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE-ECCC
Confidence 44555555555 333322 2456666666666654444445666666666666666664444556666677777 7777
Q ss_pred cccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcCcCCCCC
Q 038699 128 NSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 184 (237)
Q Consensus 128 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 184 (237)
|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 777655555667777888888888888755555667788888888888888765553
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.2e-18 Score=155.23 Aligned_cols=119 Identities=28% Similarity=0.342 Sum_probs=59.9
Q ss_pred CccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCcc
Q 038699 38 PAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV 117 (237)
Q Consensus 38 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 117 (237)
+..|..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 444555555555555555555 34444445555555555555555 44555555555555555555555 4455555555
Q ss_pred CccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCcc
Q 038699 118 GLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPAS 161 (237)
Q Consensus 118 ~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 161 (237)
+|+.| ++++|.++ .+|..|..+++|+.|++++|.+++..|..
T Consensus 294 ~L~~L-~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 294 QLKYF-YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp TCSEE-ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCEE-ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 55555 55555554 33444555555555555555555444433
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=9.1e-17 Score=120.71 Aligned_cols=127 Identities=27% Similarity=0.348 Sum_probs=94.7
Q ss_pred cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCC
Q 038699 24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN 103 (237)
Q Consensus 24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 103 (237)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..|..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777777777 4454332 47778888888777 56677777788888888888877666667777888888888888
Q ss_pred cccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699 104 NLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155 (237)
Q Consensus 104 ~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 155 (237)
.++...+..|..+++|+.| ++++|.++...+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L-~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLL-SLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEE-ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEE-ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8776666677778888888 88888887666666777888888888888775
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.6e-18 Score=152.19 Aligned_cols=154 Identities=29% Similarity=0.350 Sum_probs=119.8
Q ss_pred CCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccC
Q 038699 12 KIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGE 91 (237)
Q Consensus 12 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 91 (237)
..+..|..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 45777899999999999999999 66766779999999999999999 88999999999999999999999 77989999
Q ss_pred CCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCC-CCeEeCcCCcCcCccCccccCCCCCCE
Q 038699 92 LRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTR-LQSLNLSHNNLSGEIPASLSSMLSLVA 170 (237)
Q Consensus 92 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~ 170 (237)
+++|++|++++|.+. .+|..+..+++|+.| ++++|.+.+..+..+..... ...+++++|.+++..|. .|+.
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L-~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~ 363 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL-GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRF 363 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCE-ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEE-eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccce
Confidence 999999999999997 778889999999999 99999999877777654321 23467888888765553 4555
Q ss_pred EEcCCC
Q 038699 171 VNLSYN 176 (237)
Q Consensus 171 L~l~~n 176 (237)
|+++.|
T Consensus 364 l~l~~n 369 (727)
T 4b8c_D 364 IEINTD 369 (727)
T ss_dssp ------
T ss_pred eEeecc
Confidence 666666
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=3.3e-16 Score=115.90 Aligned_cols=131 Identities=25% Similarity=0.288 Sum_probs=88.5
Q ss_pred CcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccC
Q 038699 23 LVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQ 102 (237)
Q Consensus 23 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 102 (237)
.+.++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356667777666 334322 25677777777777755555566777777777777777755455566777777777777
Q ss_pred CcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCc
Q 038699 103 NNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGE 157 (237)
Q Consensus 103 n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 157 (237)
|.+++..+..+..+++|+.| ++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L-~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKEL-ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEE-ECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 77775555566777777777 7777777755555567777788888888877643
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=1.6e-16 Score=117.59 Aligned_cols=110 Identities=22% Similarity=0.203 Sum_probs=57.0
Q ss_pred cCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCC
Q 038699 17 IGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLR 96 (237)
Q Consensus 17 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 96 (237)
+..+.+|++|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4455666666666666663 333222223666666666666533 4555566666666666666533223335556666
Q ss_pred EEEccCCcccccCCc--cccCccCccccccCcCcccc
Q 038699 97 ILNLSQNNLIGTIPF--QIGNLVGLQDLQDLSYNSLT 131 (237)
Q Consensus 97 ~L~l~~n~~~~~~~~--~~~~l~~L~~L~~l~~n~~~ 131 (237)
+|++++|.+. ..|. .+..+++|+.| ++++|.+.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L-~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYL-CILRNPVT 126 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEE-ECCSSGGG
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEE-EecCCCCC
Confidence 6666666554 2222 34444444444 44444443
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=2.1e-16 Score=128.31 Aligned_cols=179 Identities=14% Similarity=0.084 Sum_probs=141.9
Q ss_pred CEEecCCcCC--------------------CCCCcccCC--------CCCCcEEEccCCcCCCccCccccCCCCCCEEec
Q 038699 1 MLGLAGNSIG--------------------GKIPAEIGS--------LSQLVELHLSSNQLSGEIPAHIGNLTELSTLSL 52 (237)
Q Consensus 1 ~L~l~~n~~~--------------------~~~~~~~~~--------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 52 (237)
+|||++|++. .+...+|.+ |++|+.++|.+ .++.....+|.++++|+.+++
T Consensus 53 ~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l 131 (329)
T 3sb4_A 53 VLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQI 131 (329)
T ss_dssp EEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEB
T ss_pred EEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEc
Confidence 3788888887 344556778 99999999999 888777888999999999999
Q ss_pred cCCcccccCcccccCCCCCCEEEccCCcC----cCcccccc---------------------------------------
Q 038699 53 NGNNISGQIPEEIGGLLNLDSLDLSMNRL----SGPIPNQI--------------------------------------- 89 (237)
Q Consensus 53 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~i----~~~~~~~~--------------------------------------- 89 (237)
++|.+....+..|..+.++..+....+.. .......|
T Consensus 132 ~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 211 (329)
T 3sb4_A 132 RKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG 211 (329)
T ss_dssp CCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE
T ss_pred CCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEee
Confidence 99988767778888877777776554211 00000000
Q ss_pred -----------cCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCC-eEeCcCCcCcCc
Q 038699 90 -----------GELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQ-SLNLSHNNLSGE 157 (237)
Q Consensus 90 -----------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~ 157 (237)
..+++|+.+++++|.++.....+|..+.+|+.+ ++..| ++.+...+|.++.+|+ .+++.+ .++..
T Consensus 212 ~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l-~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I 288 (329)
T 3sb4_A 212 KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI-KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI 288 (329)
T ss_dssp CCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE-ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE
T ss_pred eecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE-ECCcc-cceehHHHhhCChhccEEEEEcc-cceEE
Confidence 127899999999999987777889999999999 99998 7778889999999999 999988 77767
Q ss_pred cCccccCCCCCCEEEcCCCcCcCCCC
Q 038699 158 IPASLSSMLSLVAVNLSYNNLEGPLP 183 (237)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~n~l~~~~~ 183 (237)
.+.+|.++++|+++++++|.++...+
T Consensus 289 ~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 289 EFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred chhhhhCCccCCEEEeCCCccCccch
Confidence 78999999999999999999984443
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=2.3e-16 Score=116.67 Aligned_cols=133 Identities=23% Similarity=0.257 Sum_probs=112.4
Q ss_pred cccCCCCCCEEeccCCcccccCcccccCC-CCCCEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccC
Q 038699 40 HIGNLTELSTLSLNGNNISGQIPEEIGGL-LNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVG 118 (237)
Q Consensus 40 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 118 (237)
.+..+.+|++|++++|.++ .++. +..+ ++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4677889999999999998 4554 4444 4999999999999854 67889999999999999998665555689999
Q ss_pred ccccccCcCcccccccCh--hhcCCCCCCeEeCcCCcCcCccCc----cccCCCCCCEEEcCCCcCc
Q 038699 119 LQDLQDLSYNSLTGEIPA--QLGKLTRLQSLNLSHNNLSGEIPA----SLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 119 L~~L~~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~ 179 (237)
|+.| ++++|.+. ..+. .+..+++|+.|++++|.++ ..|. .+..+++|+.||+++|.+.
T Consensus 90 L~~L-~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTEL-ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEE-ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEE-ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999 99999997 4444 7888999999999999998 4565 4889999999999999876
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=6.1e-19 Score=152.88 Aligned_cols=159 Identities=20% Similarity=0.215 Sum_probs=131.3
Q ss_pred cCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCc-------------CcCcccccccC-----------------
Q 038699 42 GNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNR-------------LSGPIPNQIGE----------------- 91 (237)
Q Consensus 42 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~----------------- 91 (237)
..+++|+.|++++|.++ .+|..++.+++|++|++++|. ..+..|..+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 56789999999999998 789999999999999987664 22222221111
Q ss_pred ---------------CCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699 92 ---------------LRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG 156 (237)
Q Consensus 92 ---------------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 156 (237)
...|+.|++++|.+++ +|. +..+++|+.| ++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L-~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHL-DLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEE-ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEe-ecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1258899999999985 565 9999999999 99999999 778899999999999999999995
Q ss_pred ccCccccCCCCCCEEEcCCCcCcCCC-C-CCCccCCCccchhccCCcccccCCC
Q 038699 157 EIPASLSSMLSLVAVNLSYNNLEGPL-P-DGSVFSSSQSSAFTNNKDLCGKVQG 208 (237)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~n~l~~~~-~-~~~~~~~l~~~~l~~n~~l~~~~~~ 208 (237)
+| .+..+++|++|++++|++++.. | ....++.+..+++.+|+ +++.++.
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~ 551 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGI 551 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccH
Confidence 56 8899999999999999999874 4 55678999999999984 7776654
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=1.3e-18 Score=131.28 Aligned_cols=152 Identities=26% Similarity=0.322 Sum_probs=99.2
Q ss_pred CCCCcEEEccCCcCCCccCc------cccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCC
Q 038699 20 LSQLVELHLSSNQLSGEIPA------HIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELR 93 (237)
Q Consensus 20 l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 93 (237)
...++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+. .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34455555555555544443 67777777777777777774 45 6667777777777777777 5565566667
Q ss_pred CCCEEEccCCcccccCCccccCccCccccccCcCcccccccC-hhhcCCCCCCeEeCcCCcCcCccCc----------cc
Q 038699 94 DLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIP-AQLGKLTRLQSLNLSHNNLSGEIPA----------SL 162 (237)
Q Consensus 94 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~----------~~ 162 (237)
+|++|++++|.+.+ .| .+..+++|+.| ++++|.+++... ..+..+++|+.|++++|.+++..|. .+
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L-~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVL-YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEE-EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEE-ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 77777777777764 33 46667777777 777777764332 3566777777777777777644332 25
Q ss_pred cCCCCCCEEEcCCCcCc
Q 038699 163 SSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 163 ~~~~~L~~L~l~~n~l~ 179 (237)
..+++|+.|| +|+++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 6677777776 56555
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=6.9e-15 Score=119.34 Aligned_cols=193 Identities=15% Similarity=0.070 Sum_probs=142.9
Q ss_pred CCCCcEEEccCCcCC--------------------CccCccccC--------CCCCCEEeccCCcccccCcccccCCCCC
Q 038699 20 LSQLVELHLSSNQLS--------------------GEIPAHIGN--------LTELSTLSLNGNNISGQIPEEIGGLLNL 71 (237)
Q Consensus 20 l~~L~~L~L~~n~i~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L 71 (237)
+++|+.|+|++|++. .....+|.+ +++|+.+++.+ .++.....+|..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 788999999999988 234466778 99999999999 8887777889999999
Q ss_pred CEEEccCCcCcCcccccccCCCCCCEEEccCCcc----cccCCccc----------------------------------
Q 038699 72 DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNL----IGTIPFQI---------------------------------- 113 (237)
Q Consensus 72 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~~---------------------------------- 113 (237)
+.+++..|.+....+.+|..+.++..+....+.. .......|
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999999998766667888877777777655221 00000000
Q ss_pred ----------------cCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCC-EEEcCCC
Q 038699 114 ----------------GNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLV-AVNLSYN 176 (237)
Q Consensus 114 ----------------~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n 176 (237)
..+++|+.+ ++..|.++.+...+|.++.+|+.+++.+| ++.....+|.++++|+ .+++.+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l-~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSL-DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEE-ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEE-ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 026789999 99999999888899999999999999998 7767788999999999 999998
Q ss_pred cCcCCCCCC-CccCCCccchhccCCcccccCCCCCCCCCCc
Q 038699 177 NLEGPLPDG-SVFSSSQSSAFTNNKDLCGKVQGLRPCNALS 216 (237)
Q Consensus 177 ~l~~~~~~~-~~~~~l~~~~l~~n~~l~~~~~~~~~C~~~~ 216 (237)
.++...+.. .....++.+.+.+|..-.-....+..|..+.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 666333332 3346688888766643222222345666543
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=6.2e-18 Score=127.58 Aligned_cols=147 Identities=25% Similarity=0.314 Sum_probs=123.6
Q ss_pred EEecCCcCCCCCCc------ccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEE
Q 038699 2 LGLAGNSIGGKIPA------EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD 75 (237)
Q Consensus 2 L~l~~n~~~~~~~~------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 75 (237)
++++++.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW 99 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEE
Confidence 46777788877776 88899999999999999995 66 7889999999999999998 6787787889999999
Q ss_pred ccCCcCcCcccccccCCCCCCEEEccCCcccccCC-ccccCccCccccccCcCcccccccCh----------hhcCCCCC
Q 038699 76 LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIP-FQIGNLVGLQDLQDLSYNSLTGEIPA----------QLGKLTRL 144 (237)
Q Consensus 76 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~l~~n~~~~~~~~----------~~~~~~~L 144 (237)
+++|.+.+ ++ .+..+++|++|++++|.+....+ ..+..+++|+.| ++++|.+.+..+. .+..+++|
T Consensus 100 L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L-~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L 176 (198)
T 1ds9_A 100 ISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL-LLAGNPLYNDYKENNATSEYRIEVVKRLPNL 176 (198)
T ss_dssp EEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE-EECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred CcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE-EecCCccccccccccchHHHHHHHHHhCCCc
Confidence 99999985 45 68889999999999999985332 468899999999 9999998755443 37789999
Q ss_pred CeEeCcCCcCcC
Q 038699 145 QSLNLSHNNLSG 156 (237)
Q Consensus 145 ~~L~l~~n~l~~ 156 (237)
+.|+ ++.++.
T Consensus 177 ~~Ld--~~~i~~ 186 (198)
T 1ds9_A 177 KKLD--GMPVDV 186 (198)
T ss_dssp SEEC--CGGGTT
T ss_pred EEEC--CcccCH
Confidence 9998 666653
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=2e-14 Score=105.66 Aligned_cols=102 Identities=25% Similarity=0.303 Sum_probs=55.6
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
+++++|+++. +|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 14 l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 14 VDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 4555555553 33222 14555666666666555455555556666666666665544444455555666666666655
Q ss_pred cCcccccccCCCCCCEEEccCCccc
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLI 106 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~ 106 (237)
.+..+..+..+++|++|++++|.+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5443444555555666666555554
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.6e-14 Score=106.17 Aligned_cols=109 Identities=28% Similarity=0.319 Sum_probs=68.4
Q ss_pred CEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcC
Q 038699 72 DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSH 151 (237)
Q Consensus 72 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 151 (237)
+.+++++|.++ .+|..+ .++|++|++++|.+++..+..+..+++|+.| ++++|+++...+..|..+++|+.|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L-~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRL-DLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEE-ECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEE-ECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45555555555 334322 2555666666666655555556666666666 6666666655555566777777777777
Q ss_pred CcCcCccCccccCCCCCCEEEcCCCcCcCCCCC
Q 038699 152 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLPD 184 (237)
Q Consensus 152 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 184 (237)
|.+++..+..|..+++|++|++++|++++..+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 777755555677777788888888877755443
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=3.1e-14 Score=105.05 Aligned_cols=104 Identities=27% Similarity=0.315 Sum_probs=49.0
Q ss_pred cEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCC
Q 038699 24 VELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQN 103 (237)
Q Consensus 24 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 103 (237)
+.+++++|.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34455555444 3333222 44555555555555444444455555555555555554333333444555555555555
Q ss_pred cccccCCccccCccCccccccCcCcccc
Q 038699 104 NLIGTIPFQIGNLVGLQDLQDLSYNSLT 131 (237)
Q Consensus 104 ~~~~~~~~~~~~l~~L~~L~~l~~n~~~ 131 (237)
.+....+..+..+++|+.| ++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L-~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHI-YLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEE-ECCSSCBC
T ss_pred ccceeCHHHhccccCCCEE-EeCCCCcc
Confidence 5543333334455555555 55555443
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=4.9e-14 Score=103.96 Aligned_cols=108 Identities=27% Similarity=0.304 Sum_probs=62.5
Q ss_pred CEEEccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcC
Q 038699 72 DSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSH 151 (237)
Q Consensus 72 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 151 (237)
+.+++++|.+. .+|..+. ++|++|++++|.+.+..|..+..+++|+.| ++++|++++..+..|..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQL-YFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEE-ECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34455555544 3333221 455555555555554445555555555555 6666655544444556667777777777
Q ss_pred CcCcCccCccccCCCCCCEEEcCCCcCcCCCC
Q 038699 152 NNLSGEIPASLSSMLSLVAVNLSYNNLEGPLP 183 (237)
Q Consensus 152 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 183 (237)
|.++...+..|..+++|++|++++|++....+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 77765444556777777777777777764443
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.50 E-value=1.2e-15 Score=125.90 Aligned_cols=158 Identities=21% Similarity=0.238 Sum_probs=114.1
Q ss_pred CCCcEEEccCCcCCCccCccccC-----CCCCCEEeccCCcccccCcccc-cCCCCCCEEEccCCcCcCcccccc-----
Q 038699 21 SQLVELHLSSNQLSGEIPAHIGN-----LTELSTLSLNGNNISGQIPEEI-GGLLNLDSLDLSMNRLSGPIPNQI----- 89 (237)
Q Consensus 21 ~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~----- 89 (237)
+.|+.|++++|.++......+.. ..+|++|+|++|.+++.....+ ..+++|+.|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 67889999999888543333322 2689999999998874433332 245688999999998874433333
Q ss_pred cCCCCCCEEEccCCccccc----CCccccCccCccccccCcCccccccc----ChhhcCCCCCCeEeCcCCcCcCc----
Q 038699 90 GELRDLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEI----PAQLGKLTRLQSLNLSHNNLSGE---- 157 (237)
Q Consensus 90 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~---- 157 (237)
...++|++|++++|.++.. ++..+...++|+.| ++++|.+.+.. ...+...++|+.|++++|.|++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L-~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL-SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEE-ECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEE-eCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3467899999999988642 33445678889999 99999887543 44566778899999999998753
Q ss_pred cCccccCCCCCCEEEcCCCcCc
Q 038699 158 IPASLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~n~l~ 179 (237)
++..+...++|++|++++|.|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 3344556788999999999886
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=1.1e-15 Score=125.91 Aligned_cols=178 Identities=20% Similarity=0.189 Sum_probs=127.4
Q ss_pred CEEecCCcCCCCCCcccC-----CCCCCcEEEccCCcCCCccCccc-cCCCCCCEEeccCCcccccCcccc-----cCCC
Q 038699 1 MLGLAGNSIGGKIPAEIG-----SLSQLVELHLSSNQLSGEIPAHI-GNLTELSTLSLNGNNISGQIPEEI-----GGLL 69 (237)
Q Consensus 1 ~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~ 69 (237)
.|+|++|.++......+. ..++|++|+|++|.+++.....+ ..+++|++|++++|.+++.....+ ...+
T Consensus 76 ~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~ 155 (372)
T 3un9_A 76 QLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQC 155 (372)
T ss_dssp EEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTC
T ss_pred EEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCC
Confidence 378999999865444432 23799999999999985433333 345789999999999985444443 3468
Q ss_pred CCCEEEccCCcCcCc----ccccccCCCCCCEEEccCCccccc----CCccccCccCccccccCcCcccccccC----hh
Q 038699 70 NLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEIP----AQ 137 (237)
Q Consensus 70 ~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~~----~~ 137 (237)
+|++|++++|.+++. ++..+..+++|++|++++|.+.+. ++..+...++|+.| ++++|.+++... ..
T Consensus 156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L-~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL-NVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE-ECCSSCCCHHHHHHHHHH
T ss_pred ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE-ECCCCCCCHHHHHHHHHH
Confidence 899999999999742 444557889999999999998753 24567778899999 999999976433 34
Q ss_pred hcCCCCCCeEeCcCCcCcCccCccccCCCC-----CCEEE--cCCCcCc
Q 038699 138 LGKLTRLQSLNLSHNNLSGEIPASLSSMLS-----LVAVN--LSYNNLE 179 (237)
Q Consensus 138 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-----L~~L~--l~~n~l~ 179 (237)
+...++|++|++++|.|++.....+..+.. ++.+. +..+.+.
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 556789999999999998655544443321 56666 5566554
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=3.6e-12 Score=106.05 Aligned_cols=183 Identities=8% Similarity=0.003 Sum_probs=97.5
Q ss_pred CCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccccc
Q 038699 9 IGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQ 88 (237)
Q Consensus 9 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 88 (237)
++.+...+|.+|++|+.+++.+|.++.....+|. +.+|+.+.+..+ ++......|..+++|+.+++..+ ++.....+
T Consensus 168 l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~a 244 (401)
T 4fdw_A 168 LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEA 244 (401)
T ss_dssp CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTT
T ss_pred ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccc
Confidence 3444444555555555555555555533334443 345555555533 44344455556666666666543 22222334
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccc-----cccChhhcCCCCCCeEeCcCCcCcCccCcccc
Q 038699 89 IGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLT-----GEIPAQLGKLTRLQSLNLSHNNLSGEIPASLS 163 (237)
Q Consensus 89 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 163 (237)
|.. .+|+.+.+.. .+......+|..+++|+.+ .+.++.+. .....+|.++++|+.+++.+ .++.....+|.
T Consensus 245 F~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l-~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~ 320 (401)
T 4fdw_A 245 FRE-SGITTVKLPN-GVTNIASRAFYYCPELAEV-TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG 320 (401)
T ss_dssp TTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEE-EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred ccc-CCccEEEeCC-CccEEChhHhhCCCCCCEE-EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence 444 4555555532 3333445566667777777 66665543 35556677777777777763 35545566677
Q ss_pred CCCCCCEEEcCCCcCcCCCCCCCccCCCccchhccC
Q 038699 164 SMLSLVAVNLSYNNLEGPLPDGSVFSSSQSSAFTNN 199 (237)
Q Consensus 164 ~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~~~l~~n 199 (237)
++++|+.+++..| ++..-.....-..++.+.+.+|
T Consensus 321 ~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp TCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCS
T ss_pred CCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCC
Confidence 7777777777544 4322222222225666666655
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=4.1e-12 Score=105.65 Aligned_cols=172 Identities=12% Similarity=0.103 Sum_probs=142.4
Q ss_pred EEecCCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcC
Q 038699 2 LGLAGNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRL 81 (237)
Q Consensus 2 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 81 (237)
+++.+|+++.+...+|. +.+|+.+.+..+ ++.....+|.++++|+.+.+..+ ++......|.. .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 67888899987777787 689999999855 77677889999999999999985 56566677877 899999995 445
Q ss_pred cCcccccccCCCCCCEEEccCCccc-----ccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcC
Q 038699 82 SGPIPNQIGELRDLRILNLSQNNLI-----GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSG 156 (237)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 156 (237)
......+|..+++|+.+.+.+|.+. .....+|..+++|+.+ .+. +.++.....+|.++.+|+.+.+..+ ++.
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l-~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF-EIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE-CCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE-EeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 5455678999999999999988764 3556789999999999 998 4577788899999999999999665 665
Q ss_pred ccCccccCCCCCCEEEcCCCcCcCCC
Q 038699 157 EIPASLSSMLSLVAVNLSYNNLEGPL 182 (237)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~n~l~~~~ 182 (237)
....+|..+ +|+.+++++|.+....
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 778899999 9999999999887433
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=1.3e-12 Score=106.48 Aligned_cols=102 Identities=23% Similarity=0.241 Sum_probs=87.5
Q ss_pred EEecCC-cCCCCCCcccCCCCCCcEEEccC-CcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC
Q 038699 2 LGLAGN-SIGGKIPAEIGSLSQLVELHLSS-NQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN 79 (237)
Q Consensus 2 L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 79 (237)
++++++ +++. +|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 677787 8885 555 88999999999996 9999777788999999999999999999888888999999999999999
Q ss_pred cCcCcccccccCCCCCCEEEccCCccc
Q 038699 80 RLSGPIPNQIGELRDLRILNLSQNNLI 106 (237)
Q Consensus 80 ~i~~~~~~~~~~l~~L~~L~l~~n~~~ 106 (237)
.+.+..+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99965555666565 999999999886
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.40 E-value=1.1e-14 Score=126.89 Aligned_cols=129 Identities=13% Similarity=0.130 Sum_probs=59.6
Q ss_pred CCCCCcEEEccCCcCCCccCccccC-CCC-CCEEeccCCc-ccc-cCcccccCCCCCCEEEccCCcCcCc----cccccc
Q 038699 19 SLSQLVELHLSSNQLSGEIPAHIGN-LTE-LSTLSLNGNN-ISG-QIPEEIGGLLNLDSLDLSMNRLSGP----IPNQIG 90 (237)
Q Consensus 19 ~l~~L~~L~L~~n~i~~~~~~~~~~-l~~-L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~ 90 (237)
.+++|++|+|++|.+++..+..+.. ++. |++|++++|. ++. .++.....+++|++|++++|.+.+. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4566777777666665443333332 222 6666665554 110 1111222455666666666655433 222233
Q ss_pred CCCCCCEEEccCCccc----ccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeC
Q 038699 91 ELRDLRILNLSQNNLI----GTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNL 149 (237)
Q Consensus 91 ~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l 149 (237)
.+++|++|++++|.+. ...+..+..+++|+.| ++++|.+.+ .+..+..+++|+.|++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L-~L~~~~~~~-l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV-KVGDFEILE-LVGFFKAAANLEEFCG 250 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE-ECSSCBGGG-GHHHHHHCTTCCEEEE
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE-eccCccHHH-HHHHHhhhhHHHhhcc
Confidence 4555555555555553 1222233444555555 555555442 2233333444444443
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=3.2e-12 Score=104.18 Aligned_cols=104 Identities=26% Similarity=0.261 Sum_probs=81.3
Q ss_pred CEEeccCC-cccccCcccccCCCCCCEEEccC-CcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccC
Q 038699 48 STLSLNGN-NISGQIPEEIGGLLNLDSLDLSM-NRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDL 125 (237)
Q Consensus 48 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l 125 (237)
..++.+++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|++|+|++|.+.+..+..|..+++|+.| +|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL-NL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE-EC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE-eC
Confidence 34677777 777 5677 88888888888885 88886666778888888888888888887777778888888888 88
Q ss_pred cCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699 126 SYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155 (237)
Q Consensus 126 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 155 (237)
++|++++..+..|..++ |+.|++.+|.+.
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 88888866666665555 888888888776
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.36 E-value=1.2e-13 Score=120.14 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=24.0
Q ss_pred CCCCCcEEEccCCcCCC----ccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEcc
Q 038699 19 SLSQLVELHLSSNQLSG----EIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLS 77 (237)
Q Consensus 19 ~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 77 (237)
.+++|++|++++|.+++ .++..+..+++|+.|++++|.+. .++..+..+++|++|+++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhccc
Confidence 34444444444444431 12222334445555555554444 233333344444444443
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.32 E-value=1.5e-14 Score=125.99 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=76.7
Q ss_pred CCCCCEEEccCCcCcCccccccc-CCCCCCEEEcc--C----Cccccc-----CCccccCccCccccccCcCcccccccC
Q 038699 68 LLNLDSLDLSMNRLSGPIPNQIG-ELRDLRILNLS--Q----NNLIGT-----IPFQIGNLVGLQDLQDLSYNSLTGEIP 135 (237)
Q Consensus 68 l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~-----~~~~~~~l~~L~~L~~l~~n~~~~~~~ 135 (237)
+++|+.|.+..+.+++.....+. .+++|++|+++ + +.++.. .+..+..+++|+.| ++++ .+++...
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L-~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL-SLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE-ECCS-SCCHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE-eecC-cccHHHH
Confidence 45555555555555433222332 46777777777 2 333311 11124556677777 7766 4444433
Q ss_pred hhhcC-CCCCCeEeCcCCcCcCccCccc-cCCCCCCEEEcCCCcCcCCCC--CCCccCCCccchhccCCc
Q 038699 136 AQLGK-LTRLQSLNLSHNNLSGEIPASL-SSMLSLVAVNLSYNNLEGPLP--DGSVFSSSQSSAFTNNKD 201 (237)
Q Consensus 136 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~--~~~~~~~l~~~~l~~n~~ 201 (237)
..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++... ....+++++.+++.+|+.
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 34433 6778888888888765444444 567888888888888753221 123356778888877754
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.29 E-value=8.8e-14 Score=121.09 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=59.6
Q ss_pred CCCCCcEEEccCCcCCCccCcccc-CCCCCCEEeccCC-ccccc-CcccccCCCCCCEEEccCCcCcCcccccc----cC
Q 038699 19 SLSQLVELHLSSNQLSGEIPAHIG-NLTELSTLSLNGN-NISGQ-IPEEIGGLLNLDSLDLSMNRLSGPIPNQI----GE 91 (237)
Q Consensus 19 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~----~~ 91 (237)
.+++|++|++++|.+++..+..+. .+++|++|++++| .+++. ++.....+++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 456777777777766654444443 4667777777776 34321 23333456677777777776554333222 24
Q ss_pred CCCCCEEEccCCc--ccc-cCCccccCccCccccccCcCc
Q 038699 92 LRDLRILNLSQNN--LIG-TIPFQIGNLVGLQDLQDLSYN 128 (237)
Q Consensus 92 l~~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~~l~~n 128 (237)
+++|++|++++|. +.. ........+++|+.| ++++|
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L-~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSL-KLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE-ECCTT
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE-ecCCC
Confidence 5567777776664 211 011112334666666 66655
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=1e-10 Score=95.77 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=105.4
Q ss_pred cCCCCCCcEEEccCCcCC---------CccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccc
Q 038699 17 IGSLSQLVELHLSSNQLS---------GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPN 87 (237)
Q Consensus 17 ~~~l~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 87 (237)
...+++|+.|.+.+.... +.+...+..+|+|+.|.++++.-. .++. + .+++|+.|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 345688999988765331 123344567899999999887311 2233 3 378999999998887643333
Q ss_pred ccc--CCCCCCEEEccC--Cccccc-----CCccc--cCccCccccccCcCcccccccChhh---cCCCCCCeEeCcCCc
Q 038699 88 QIG--ELRDLRILNLSQ--NNLIGT-----IPFQI--GNLVGLQDLQDLSYNSLTGEIPAQL---GKLTRLQSLNLSHNN 153 (237)
Q Consensus 88 ~~~--~l~~L~~L~l~~--n~~~~~-----~~~~~--~~l~~L~~L~~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~ 153 (237)
.+. .+++|++|+|+. +...+. +...+ ..+++|+.| .+.+|.+.+.....+ ..+++|+.|+++.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L-~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL-GIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE-EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE-eCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 343 689999998853 221111 11122 247899999 999988864333333 247889999999999
Q ss_pred CcCcc----CccccCCCCCCEEEcCCCcCc
Q 038699 154 LSGEI----PASLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 154 l~~~~----~~~~~~~~~L~~L~l~~n~l~ 179 (237)
+++.. +..+..+++|+.|++++|.++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 88642 333455789999999999876
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=5.4e-10 Score=91.54 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=109.1
Q ss_pred CcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCccccc--CCCCCCEEEccC--CcCcC-----c
Q 038699 14 PAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIG--GLLNLDSLDLSM--NRLSG-----P 84 (237)
Q Consensus 14 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~i~~-----~ 84 (237)
...+..+|+|+.|.+.++.-. ..+. +. +++|++|++..+.+.......+. .+++|+.|+|+. +...+ .
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 344567899999999987322 2222 33 78999999999988754434443 789999999863 22111 1
Q ss_pred ccccc--cCCCCCCEEEccCCcccccCCccc---cCccCccccccCcCcccccccCh----hhcCCCCCCeEeCcCCcCc
Q 038699 85 IPNQI--GELRDLRILNLSQNNLIGTIPFQI---GNLVGLQDLQDLSYNSLTGEIPA----QLGKLTRLQSLNLSHNNLS 155 (237)
Q Consensus 85 ~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~l~ 155 (237)
+...+ ..+++|++|++.+|.+.+..+..+ ..+++|+.| +++.|.+.+.... .+..+++|+.|++++|.++
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L-dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM-DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE-ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE-ECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11222 357999999999998864332222 357899999 9999998864332 2355799999999999998
Q ss_pred CccCccccCCCCCCEEEcCCCc
Q 038699 156 GEIPASLSSMLSLVAVNLSYNN 177 (237)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~n~ 177 (237)
+.....+...- -..++++.++
T Consensus 321 d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHC-CSEEECCSBC
T ss_pred HHHHHHHHHHc-CCEEEecCCc
Confidence 65555554411 4668998887
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.81 E-value=1.2e-09 Score=81.18 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=58.3
Q ss_pred cccCCCCCCEEeccCC-ccccc----CcccccCCCCCCEEEccCCcCcCc----ccccccCCCCCCEEEccCCcccccCC
Q 038699 40 HIGNLTELSTLSLNGN-NISGQ----IPEEIGGLLNLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNLIGTIP 110 (237)
Q Consensus 40 ~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~ 110 (237)
.+...+.|++|+|++| .+.+. +...+...++|++|++++|.+.+. +...+...+.|++|++++|.+.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555666666665 55421 223334445555555555555421 12223333445555555554432100
Q ss_pred ccccCccCccccccCcCcccccccChhhcCCCCCCeEeC--cCCcCcCc----cCccccCCCCCCEEEcCCCcCc
Q 038699 111 FQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNL--SHNNLSGE----IPASLSSMLSLVAVNLSYNNLE 179 (237)
Q Consensus 111 ~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l--~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~ 179 (237)
. .....+...++|++|++ ++|.+.+. +...+...++|++|++++|.+.
T Consensus 111 ~---------------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 L---------------------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp H---------------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred H---------------------HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 0 11233444556666666 56666542 2334445567777777777664
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.75 E-value=1.6e-09 Score=80.48 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=81.0
Q ss_pred cccCCCCCCcEEEccCC-cCCCc----cCccccCCCCCCEEeccCCccccc----CcccccCCCCCCEEEccCCcCcCc-
Q 038699 15 AEIGSLSQLVELHLSSN-QLSGE----IPAHIGNLTELSTLSLNGNNISGQ----IPEEIGGLLNLDSLDLSMNRLSGP- 84 (237)
Q Consensus 15 ~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~- 84 (237)
..+...+.|++|+|++| .+... +...+...++|++|+|++|.+.+. +...+...++|++|++++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34567899999999999 88743 445566788999999999999753 344555668999999999999853
Q ss_pred ---ccccccCCCCCCEEEc--cCCcccccC----CccccCccCccccccCcCccc
Q 038699 85 ---IPNQIGELRDLRILNL--SQNNLIGTI----PFQIGNLVGLQDLQDLSYNSL 130 (237)
Q Consensus 85 ---~~~~~~~l~~L~~L~l--~~n~~~~~~----~~~~~~l~~L~~L~~l~~n~~ 130 (237)
+...+...+.|++|++ ++|.+.... ...+...++|+.| ++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L-~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF-GYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE-ECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEE-eccCCCC
Confidence 3456677788888888 778776432 2223333444444 5544444
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.64 E-value=2.5e-07 Score=76.53 Aligned_cols=138 Identities=12% Similarity=0.051 Sum_probs=81.1
Q ss_pred CCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccc-
Q 038699 9 IGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPN- 87 (237)
Q Consensus 9 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~- 87 (237)
++.+...+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++......|..+.+|+.+.+..+-.. ....
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~-i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKS-IGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCE-ECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceee-eccee
Confidence 44556677999999999999754 66566788999999999999765 55455677888888887766543211 1122
Q ss_pred ---------------------cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCe
Q 038699 88 ---------------------QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQS 146 (237)
Q Consensus 88 ---------------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~ 146 (237)
+|..+++|+.+.+..+.. ......|..+.+|+.+ .+..+ ++.....+|.++..|+.
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i-~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSI-KLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBC-CCCTT-CCEECTTTTTTCTTCCB
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEE-EcCCC-ceEeCchhhccccccce
Confidence 334444555555543321 1333344455555555 44443 22244444555555555
Q ss_pred EeCcCC
Q 038699 147 LNLSHN 152 (237)
Q Consensus 147 L~l~~n 152 (237)
+.+..+
T Consensus 213 i~~~~~ 218 (394)
T 4fs7_A 213 MEFPNS 218 (394)
T ss_dssp CCCCTT
T ss_pred eecCCC
Confidence 554443
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.60 E-value=1.3e-06 Score=72.33 Aligned_cols=121 Identities=10% Similarity=0.181 Sum_probs=79.4
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCC
Q 038699 88 QIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLS 167 (237)
Q Consensus 88 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 167 (237)
+|..+..|+.+.+..+... ....+|..+.+|+.+ .+. +.++.....+|.++.+|+.+++..+ ++.....+|.++.+
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i-~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDI-EFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEE-ECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccEEecccccce-ecCcccccccccccc-cCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 4566788888888765432 555678888888888 775 4455577778888889999988764 55466678888899
Q ss_pred CCEEEcCCCcCcCCCCCCC--ccCCCccchhccCCcccccCCCCCCCCCCcc
Q 038699 168 LVAVNLSYNNLEGPLPDGS--VFSSSQSSAFTNNKDLCGKVQGLRPCNALST 217 (237)
Q Consensus 168 L~~L~l~~n~l~~~~~~~~--~~~~l~~~~l~~n~~l~~~~~~~~~C~~~~~ 217 (237)
|+.+.+..+ ++ .+.... .-.+|+.+.+.++..... ....|..+..
T Consensus 336 L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~~---~~~~~~~L~~ 382 (394)
T 4gt6_A 336 LERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQWN---AISTDSGLQN 382 (394)
T ss_dssp CCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHHH---TCBCCCCC--
T ss_pred CCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeehh---hhhccCCCCE
Confidence 999888654 44 344331 124577777776643332 2345655543
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.56 E-value=8.3e-07 Score=72.94 Aligned_cols=155 Identities=11% Similarity=0.102 Sum_probs=102.3
Q ss_pred ccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCC
Q 038699 16 EIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDL 95 (237)
Q Consensus 16 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 95 (237)
.+..+..+..+.+...... ....++..+..|+.+.+..+ ++......+..+..|+.+.+..+ ++......+..+.+|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 3455566666665544333 44555667777887777654 33355566777778888877655 333444567777788
Q ss_pred CEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCC
Q 038699 96 RILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSY 175 (237)
Q Consensus 96 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 175 (237)
+.+.+..+ +.......|..+.+|+.+ .+..+.++.....+|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i-~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKV-VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEE-EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccc-ceeccccccccccccccc-cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 88877654 333445567777888888 77777777677777888888888888654 5545566788888888777754
Q ss_pred C
Q 038699 176 N 176 (237)
Q Consensus 176 n 176 (237)
+
T Consensus 343 ~ 343 (379)
T 4h09_A 343 S 343 (379)
T ss_dssp T
T ss_pred c
Confidence 3
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.55 E-value=1.3e-08 Score=79.64 Aligned_cols=104 Identities=25% Similarity=0.284 Sum_probs=67.7
Q ss_pred cCCCCCCcE--EEccCCcCC---CccCccccCCCCCCEEeccCCcccc--cCcccccCCCCCCEEEccCCcCcCcccccc
Q 038699 17 IGSLSQLVE--LHLSSNQLS---GEIPAHIGNLTELSTLSLNGNNISG--QIPEEIGGLLNLDSLDLSMNRLSGPIPNQI 89 (237)
Q Consensus 17 ~~~l~~L~~--L~L~~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 89 (237)
|...+.|+. +++..|... ..+......+++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444555554 566666433 1122222467888888888888885 3345666788899999988888754 233
Q ss_pred cCCC--CCCEEEccCCcccccCC-------ccccCccCcccc
Q 038699 90 GELR--DLRILNLSQNNLIGTIP-------FQIGNLVGLQDL 122 (237)
Q Consensus 90 ~~l~--~L~~L~l~~n~~~~~~~-------~~~~~l~~L~~L 122 (237)
..+. +|++|++++|.+.+..| ..+..+++|+.|
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~L 256 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEE
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeE
Confidence 4444 88889999988875444 235567777766
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.52 E-value=1.2e-06 Score=72.36 Aligned_cols=158 Identities=11% Similarity=0.011 Sum_probs=82.2
Q ss_pred CCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCccccc
Q 038699 9 IGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQ 88 (237)
Q Consensus 9 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 88 (237)
++.+...+|.++..|+.+.+..+... +...+.....|+.+.+.... +......+..+..++.+.+..+... .....
T Consensus 196 ~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~ 271 (394)
T 4fs7_A 196 LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSL 271 (394)
T ss_dssp CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCT
T ss_pred ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccc
Confidence 44444566777888887777665433 22223344566666665432 2244455666666766666555433 33344
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCC
Q 038699 89 IGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSL 168 (237)
Q Consensus 89 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 168 (237)
+..+..++.+....+.+. ...+..+.+|+.+ .+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|
T Consensus 272 F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i-~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEV-KLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTTCTTCCEEEECSSEEC---TTTTTTCTTCCEE-EECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred cccccccceeccCceeec---ccccccccccccc-ccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 555555555555443322 1234455555555 44433 33344455555555555555433 333444555555555
Q ss_pred CEEEcCCC
Q 038699 169 VAVNLSYN 176 (237)
Q Consensus 169 ~~L~l~~n 176 (237)
+.+++..+
T Consensus 346 ~~i~lp~~ 353 (394)
T 4fs7_A 346 SNINFPLS 353 (394)
T ss_dssp CEECCCTT
T ss_pred CEEEECcc
Confidence 55555444
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.52 E-value=5.4e-08 Score=71.02 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=46.9
Q ss_pred CCCcEEEccCCcCCCccCccccCCCCCCEEeccCCc-ccccCcccccCC----CCCCEEEccCCc-CcCcccccccCCCC
Q 038699 21 SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNN-ISGQIPEEIGGL----LNLDSLDLSMNR-LSGPIPNQIGELRD 94 (237)
Q Consensus 21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~~~~l~~ 94 (237)
..|+.|+++++.+++..-..+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666665444455666666666666663 443333333333 256666666653 55333334455666
Q ss_pred CCEEEccCCc
Q 038699 95 LRILNLSQNN 104 (237)
Q Consensus 95 L~~L~l~~n~ 104 (237)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.50 E-value=4e-09 Score=82.51 Aligned_cols=97 Identities=28% Similarity=0.288 Sum_probs=69.8
Q ss_pred EeccCCccc---ccCcccccCCCCCCEEEccCCcCcC--cccccccCCCCCCEEEccCCcccccCCccccCcc--Ccccc
Q 038699 50 LSLNGNNIS---GQIPEEIGGLLNLDSLDLSMNRLSG--PIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLV--GLQDL 122 (237)
Q Consensus 50 L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L 122 (237)
++++.|... ..+......+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 455666433 1122223568899999999999986 3445667899999999999999854 2344444 89999
Q ss_pred ccCcCcccccccC-------hhhcCCCCCCeEeC
Q 038699 123 QDLSYNSLTGEIP-------AQLGKLTRLQSLNL 149 (237)
Q Consensus 123 ~~l~~n~~~~~~~-------~~~~~~~~L~~L~l 149 (237)
++.+|.+.+..+ ..+..+++|+.||-
T Consensus 226 -~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 -WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp -ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred -EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 999999976444 23667899999873
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=8.4e-07 Score=73.38 Aligned_cols=149 Identities=9% Similarity=0.105 Sum_probs=101.0
Q ss_pred CCCcEEEccCCcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEc
Q 038699 21 SQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNL 100 (237)
Q Consensus 21 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 100 (237)
..+..+.+.. .++.....+|..+..|+.+.+..+... .....|.++.+|+.+.+.. .+.......|..+.+|+.+.+
T Consensus 242 ~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 242 REDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp CCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEC
T ss_pred cccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEe
Confidence 3444555543 233345677888899999998776544 6667888889999998864 344344567888899999999
Q ss_pred cCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCcCccCccccCCCCCCEEEcCCCcC
Q 038699 101 SQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLSGEIPASLSSMLSLVAVNLSYNNL 178 (237)
Q Consensus 101 ~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 178 (237)
..+ ++.....+|.++.+|+.+ .+..+ ++.....+|.++.+|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 319 p~~-v~~I~~~aF~~C~~L~~i-~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 319 PEG-ITQILDDAFAGCEQLERI-AIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEE-EECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCc-ccEehHhHhhCCCCCCEE-EECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 764 554556788899999998 88654 66577788999999999999887543 24566788888888776654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.42 E-value=3e-06 Score=69.54 Aligned_cols=185 Identities=11% Similarity=0.077 Sum_probs=126.6
Q ss_pred cCCCCCCcccCCCCCCcEEEccCCcCCC------------ccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEE
Q 038699 8 SIGGKIPAEIGSLSQLVELHLSSNQLSG------------EIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLD 75 (237)
Q Consensus 8 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 75 (237)
.++.+...+|..+..++.+.+..+.... .....+.....+..+.+...... .....+....+|+.+.
T Consensus 145 ~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~ 223 (379)
T 4h09_A 145 SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKIT 223 (379)
T ss_dssp TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEE
T ss_pred eeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eeecccccccccceee
Confidence 4555666778888888888776543321 12234455566777766654333 4556677788899988
Q ss_pred ccCCcCcCcccccccCCCCCCEEEccCCcccccCCccccCccCccccccCcCcccccccChhhcCCCCCCeEeCcCCcCc
Q 038699 76 LSMNRLSGPIPNQIGELRDLRILNLSQNNLIGTIPFQIGNLVGLQDLQDLSYNSLTGEIPAQLGKLTRLQSLNLSHNNLS 155 (237)
Q Consensus 76 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 155 (237)
+..+ +.......+..+..|+.+.+..+ ++.....++..+.+|+.+ .+..+ +......+|.++.+|+.+.+.++.++
T Consensus 224 ~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i-~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~ 299 (379)
T 4h09_A 224 ITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL-NFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE 299 (379)
T ss_dssp CCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE-EECCC-CSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred eccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc-ccccc-ceeccccccccccccccccccccccc
Confidence 8665 33244567788899999998775 544556778888889888 77654 55577788999999999999988888
Q ss_pred CccCccccCCCCCCEEEcCCCcCcCCCCCCC-c-cCCCccchhccC
Q 038699 156 GEIPASLSSMLSLVAVNLSYNNLEGPLPDGS-V-FSSSQSSAFTNN 199 (237)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~-~~~l~~~~l~~n 199 (237)
.....+|.++.+|+.+++..+ ++ .+.... . -.+++.+.+-.+
T Consensus 300 ~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 300 TLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred eehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 677788999999999999754 44 333321 1 134556655443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=9.8e-08 Score=69.66 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=21.3
Q ss_pred CCCCEEEccCCcCcCcccccccCCCCCCEEEccCCc
Q 038699 69 LNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNN 104 (237)
Q Consensus 69 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 104 (237)
..|+.|+++++.+++.--..+..+++|++|++++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 356666666666654433445566666666666663
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.75 E-value=1.2e-05 Score=59.64 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=39.9
Q ss_pred cCCCCCCEEEccCCccccc----CCccccCccCccccccCcCccccccc----ChhhcCCCCCCeEeCcCC---cCcC--
Q 038699 90 GELRDLRILNLSQNNLIGT----IPFQIGNLVGLQDLQDLSYNSLTGEI----PAQLGKLTRLQSLNLSHN---NLSG-- 156 (237)
Q Consensus 90 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n---~l~~-- 156 (237)
...+.|+.|+|++|.+.+. +.+.+..-+.|+.| ++++|.|.+.. ..++..-..|++|+++++ .+.+
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L-~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVL-NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEE-ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeE-ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 3344444444444444322 11222233444444 55555444321 123344455666666543 2322
Q ss_pred --ccCccccCCCCCCEEEcCCCcC
Q 038699 157 --EIPASLSSMLSLVAVNLSYNNL 178 (237)
Q Consensus 157 --~~~~~~~~~~~L~~L~l~~n~l 178 (237)
.+...+..-+.|++|+++.|.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 1233444556677777765543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.68 E-value=2e-05 Score=58.54 Aligned_cols=112 Identities=15% Similarity=0.203 Sum_probs=67.7
Q ss_pred cCCCCCCEEeccCC-cccc----cCcccccCCCCCCEEEccCCcCcCc----ccccccCCCCCCEEEccCCccccc----
Q 038699 42 GNLTELSTLSLNGN-NISG----QIPEEIGGLLNLDSLDLSMNRLSGP----IPNQIGELRDLRILNLSQNNLIGT---- 108 (237)
Q Consensus 42 ~~l~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~---- 108 (237)
..-+.|++|+|+++ .+.+ .+...+..-..|+.|+|++|.+.+. +.+.+..-+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456777777764 5543 2344555566777777777777633 333445567777777777777532
Q ss_pred CCccccCccCccccccCcCc---cccc----ccChhhcCCCCCCeEeCcCCcC
Q 038699 109 IPFQIGNLVGLQDLQDLSYN---SLTG----EIPAQLGKLTRLQSLNLSHNNL 154 (237)
Q Consensus 109 ~~~~~~~l~~L~~L~~l~~n---~~~~----~~~~~~~~~~~L~~L~l~~n~l 154 (237)
+.+.+..-..|+.| ++++| .+.. .+...+..-++|..|+++.|.+
T Consensus 118 la~aL~~N~tL~~L-~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEF-KADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEE-ECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEE-ECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23445556667777 77654 2332 1234456667888888877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.22 E-value=0.00073 Score=46.63 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=34.6
Q ss_pred EEEccCCcCC-CccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCCcCc
Q 038699 25 ELHLSSNQLS-GEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMNRLS 82 (237)
Q Consensus 25 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 82 (237)
.++.+++.++ ..+|..+. ++|++|+|++|.|+...+..|..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666665 23343221 35777777777777555556667777777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.0026 Score=43.84 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=35.0
Q ss_pred EEeccCCccc-ccCcccccCCCCCCEEEccCCcCcCcccccccCCCCCCEEEccCCccc
Q 038699 49 TLSLNGNNIS-GQIPEEIGGLLNLDSLDLSMNRLSGPIPNQIGELRDLRILNLSQNNLI 106 (237)
Q Consensus 49 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~ 106 (237)
.++.+++.++ ..+|..+. ++|++|+|++|.|+...+..|..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666654 23443221 35777777777777555556677777777777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.65 E-value=0.65 Score=30.01 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=34.2
Q ss_pred CCcCCCCCCcccCCCCCCcEEEccCCcCCCccCccccCCCCCCEEeccCC
Q 038699 6 GNSIGGKIPAEIGSLSQLVELHLSSNQLSGEIPAHIGNLTELSTLSLNGN 55 (237)
Q Consensus 6 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 55 (237)
|..++.+...+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 45666677777888888888777765 33355667777777777777653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.78 E-value=3 Score=26.76 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=32.6
Q ss_pred CcCCCccCccccCCCCCCEEeccCCcccccCcccccCCCCCCEEEccCC
Q 038699 31 NQLSGEIPAHIGNLTELSTLSLNGNNISGQIPEEIGGLLNLDSLDLSMN 79 (237)
Q Consensus 31 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 79 (237)
..++.....+|.++..|+.+.+..+ ++......|..+.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455556677778888888888764 34355667777777877777653
Done!