BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038702
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 59
MATSS D T +WDLR++ DK + H++ V++AYF+P+ S+ L TT + I ++
Sbjct: 219 MATSSVDATVKLWDLRNIK-DKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 277
Query: 60 SGVNFEN-TAMIHHNNQTGRWISSFRAIW----------GWDDSCIFIGNMTRTVEVISP 108
S ++ +I H ++ + ++ +A W + D + + N RT+++
Sbjct: 278 SSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLL-NDKRTIDIYDA 336
Query: 109 AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154
V L+ P + I P G + + G + +W +
Sbjct: 337 NSGGLVHQLRDPNAAGIISLNKFSP--TGDVLASGMGFNILIWNRE 380
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 59
MATSS D T +WDLR++ DK + H++ V++AYF+P+ S+ L TT + I ++
Sbjct: 220 MATSSVDATVKLWDLRNIK-DKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 278
Query: 60 SGVNFEN-TAMIHHNNQTGRWISSFRAIW----------GWDDSCIFIGNMTRTVEVISP 108
S ++ +I H ++ + ++ +A W + D + + N RT+++
Sbjct: 279 SSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLL-NDKRTIDIYDA 337
Query: 109 AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154
V L+ P + I P G + + G + +W +
Sbjct: 338 NSGGLVHQLRDPNAAGIISLNKFSP--TGDVLASGMGFNILIWNRE 381
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 16/167 (9%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+AT+S D T IWDLR + K L H+ V++A FSP G+ L TT I ++S
Sbjct: 267 LATASVDQTVKIWDLRQV-RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 325
Query: 61 GVNFE-NTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM------------TRTVEVIS 107
++ +I H ++ + ++ +A W + I +G RT++V
Sbjct: 326 ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD 385
Query: 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154
+ + L P S I +P +G + G + +W+ +
Sbjct: 386 GNSGKMMCQLYDPESSGISSLNEFNP--MGDTLASAMGYHILIWSQE 430
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 16/166 (9%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+AT+S D T IWDLR + K L H+ V++A FSP G+ L TT I ++S
Sbjct: 266 LATASVDQTVKIWDLRQV-RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
Query: 61 GVNFE-NTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM------------TRTVEVIS 107
++ +I H ++ + ++ +A W + I +G RT++V
Sbjct: 325 ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD 384
Query: 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153
+ + L P S I +P +G + G + +W+
Sbjct: 385 GNSGKMMCQLYDPESSGISSLNEFNP--MGDTLASAMGYHILIWSE 428
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+AT+S D T IWDLR + K L H+ V++A FSP G+ L TT I ++S
Sbjct: 266 LATASVDQTVKIWDLRQV-RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
Query: 61 GVNFE-NTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM------------TRTVEVIS 107
++ +I H ++ + ++ +A W + I +G RT++V
Sbjct: 325 ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFD 384
Query: 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152
+ + L P S I +P +G + G + +W+
Sbjct: 385 GNSGKMMCQLYDPESSGISSLNEFNP--MGDTLASAMGYHILIWS 427
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T CIW + D T + H+ V S ++PSG+ LAT S D ++ +W
Sbjct: 76 LASASFDATTCIW--KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+AT S D + +W++ D+ E VL SH + V + PS LA+ S+DDT+ ++
Sbjct: 120 LATCSRDKSVWVWEVDE--EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV--NFEN-TAMIHHNNQ 75
H+R V +SP G+ LA+ SFD T IW +FE T + H N+
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE 107
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 62/169 (36%), Gaps = 20/169 (11%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T ++ R D + H+ V S F PSG LA+ S D T+ IW
Sbjct: 165 LASASYDDTVKLY--REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
Query: 61 GVNFENTAMIHHNNQTGRW-----ISSFRAIWGWDDS-CIFIGNMTRTV--EVISPAQRR 112
N + + W +S F + +D + C G + + I Q
Sbjct: 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED 282
Query: 113 SVATLQSPYISAIPCRFHAH----------PHQVGTLAGATGGGQVYVW 151
+ Q P S AH P + G LA + G+V W
Sbjct: 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 15 LRSMATDKPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--F 64
+ S KP P K + H +AV S FSP+G LA++S D I IW + F
Sbjct: 3 MGSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 62
Query: 65 ENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA 124
E T +G + W D + + + +T+++ + + + TL+
Sbjct: 63 EKTI-------SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 115
Query: 125 IPCRFHAHPHQV 136
C F+ + +
Sbjct: 116 FCCNFNPQSNLI 127
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 219
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 273
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 274 KEIVQKLQ 281
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 5 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 61
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 62 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 132 HPHQV 136
+ +
Sbjct: 118 QSNLI 122
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 214
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 268
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 269 KEIVQKLQ 276
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 11 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 67
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 68 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 132 HPHQV 136
+ +
Sbjct: 124 QSNLI 128
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 220
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 274
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 275 KEIVQKLQ 282
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 8 KPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 64
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 65 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 132 HPHQV 136
+ +
Sbjct: 121 QSNLI 125
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 217
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 218 DLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNMVYIWNL-QT 271
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 272 KEIVQKLQ 279
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 8 KPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 64
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 65 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 132 HPHQV 136
+ +
Sbjct: 121 QSNLI 125
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 217
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNMVYIWNL-QT 271
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 272 KEIVQKLQ 279
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 5 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 61
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 62 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 132 HPHQV 136
+ +
Sbjct: 118 QSNLI 122
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 214
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 268
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 269 KEIVQKLQ 276
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 22 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 78
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 79 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 134
Query: 132 HPHQV 136
+ +
Sbjct: 135 QSNLI 139
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 181 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 231
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 285
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 286 KEIVQKLQ 293
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 11 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 67
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 68 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 132 HPHQV 136
+ +
Sbjct: 124 QSNLI 128
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 220
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 274
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 275 KEIVQKLQ 282
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 1 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 57
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 58 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 113
Query: 132 HPHQV 136
+ +
Sbjct: 114 QSNLI 118
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 160 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 210
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 264
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 265 KEIVQKLQ 272
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 6 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 62
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 63 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 118
Query: 132 HPHQV 136
+ +
Sbjct: 119 QSNLI 123
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P V FSP+G + + D+
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP---------VSFVKFSPNGKYILAATLDN 215
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 269
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 270 KEIVQKLQ 277
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 11 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 67
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 68 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 132 HPHQV 136
+ +
Sbjct: 124 QSNLI 128
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 220
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 274
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 275 KEIVQKLQ 282
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 29 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 85
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 86 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 132 HPHQV 136
+ +
Sbjct: 142 QSNLI 146
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P V FSP+G + + D+
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP---------VSFVKFSPNGKYILAATLDN 238
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 292
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 293 KEIVQKLQ 300
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 22 KPEPTK--------VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIH 71
KP P K + H +AV S FSP+G LA++S D I IW + FE T
Sbjct: 27 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--- 83
Query: 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA 131
+G + W D + + + +T+++ + + + TL+ C F+
Sbjct: 84 ----SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 132 HPHQV 136
+ +
Sbjct: 140 QSNLI 144
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P V FSP+G + + D+
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPP---------VSFVKFSPNGKYILAATLDN 236
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 290
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 291 KEIVQKLQ 298
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+AT S D + IW+ + + + H + V + PS + LA++S+DDT+ IW
Sbjct: 122 LATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181
Query: 61 GVNFENTAMIHHNNQTGR-WISSF 83
+ + + N G W S F
Sbjct: 182 DYDDDWECVAVLNGHEGTVWSSDF 205
Score = 33.5 bits (75), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVL---SHKRAVHSAYFSPSGSSLATTSFDDTIG 57
+AT STD L S+ D VL +HK+A+ S + P S LA SFD T+
Sbjct: 27 LATGSTDRKI---KLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83
Query: 58 IWS 60
IW+
Sbjct: 84 IWA 86
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS----HKRAVHSAYFSPSGSSLATTSFDDTI 56
+A S D T IW + + D+ +L+ H+ V +S G LAT S D ++
Sbjct: 73 LAAGSFDSTVSIW-AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 57 GIW----SGVNFENTAMIHHNNQ 75
IW SG +E +++ ++Q
Sbjct: 132 WIWETDESGEEYECISVLQEHSQ 154
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIHHNNQTGRWISSFRAIWG 88
H +AV S FSP+G LA++S D I IW + FE T +G + W
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWS 73
Query: 89 WDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 136
D + + + +T+++ + + + TL+ C F+ + +
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 163 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 213
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 267
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 268 KEIVQKLQ 275
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIHHNNQTGRWISSFRAIWG 88
H +AV S FSP+G LA++S D I IW + FE T +G + W
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWS 77
Query: 89 WDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 136
D + + + +T+++ + + + TL+ C F+ + +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 217
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 271
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 272 KEIVQKLQ 279
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIHHNNQTGRWISSFRAIWG 88
H +AV S FSP+G LA++S D I IW + FE T +G + W
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWS 77
Query: 89 WDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 136
D + + + +T+++ + + + TL+ C F+ + +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 217
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 271
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 272 KEIVQKLQ 279
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FENTAMIHHNNQTGRWISSFRAIWG 88
H +AV S FSP+G LA +S D I IW + FE T +G + W
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWS 77
Query: 89 WDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 136
D + + + +T+++ + + + TL+ C F+ + +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 1 MATSSTDGTACIWD------LRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD 54
+ +SS DG IWD L+++ D P + FSP+G + + D+
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDN 217
Query: 55 TIGIW--SGVNFENTAMIHHNNQT----------GRWISSFRAIWGWDDSCIFIGNMTRT 102
T+ +W S T H N + G+WI S G +D+ ++I N+ +T
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QT 271
Query: 103 VEVISPAQ 110
E++ Q
Sbjct: 272 KEIVQKLQ 279
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ ++S D T IWD+ S K + H V F+P + + + SFD+++ IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+ + S D + IWD+++ K P +H V + +F+ GS + ++S+D IW
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHN--NQTGRWISSFRAIWG 88
H + VHS ++P GS A+T D TI +++GV+ T + + S F W
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 89 WDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL 139
D + I + +T+++ +VATL+ IP Q+G +
Sbjct: 249 PDGTKIASASADKTIKI------WNVATLKVE--KTIPVGTRIEDQQLGII 291
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 1 MATSSTDGTACIW---DLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIG 57
A++ DGT ++ D + + K ++H +V +SP G+ +A+ S D TI
Sbjct: 205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK 264
Query: 58 IWS 60
IW+
Sbjct: 265 IWN 267
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 34.3 bits (77), Expect = 0.033, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
H VH FSP GSS T+S D TI +W
Sbjct: 887 HLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 33.9 bits (76), Expect = 0.036, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+AT S+D +WDL K + H +V+ FSP LA+ S D T+ +W
Sbjct: 722 LATGSSDCFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Query: 61 GVN 63
+
Sbjct: 778 ATS 780
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 59
+AT S D T +WDLR++ K + SHK + ++SP + LA++ D + +W
Sbjct: 291 LATGSADKTVALWDLRNL---KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN 63
+ D IWD RS T KP V +H V+ F+P S LAT S D T+ +W N
Sbjct: 249 ADDQKLXIWDTRSNTTSKPSHL-VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
Query: 64 FE 65
+
Sbjct: 308 LK 309
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 59
+AT S D T +WDLR++ K + SHK + ++SP + LA++ D + +W
Sbjct: 291 LATGSADKTVALWDLRNL---KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN 63
+ D IWD RS T KP V +H V+ F+P S LAT S D T+ +W N
Sbjct: 249 ADDQKLMIWDTRSNTTSKPSHL-VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
Query: 64 FE 65
+
Sbjct: 308 LK 309
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
M ++S D T +WD + ++ + H +V F SG LA+ S D TI +W
Sbjct: 123 MVSASEDATIKVWDYETGDFERT----LKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178
Query: 61 GVNFENTAMIH 71
FE +H
Sbjct: 179 FQGFECIRTMH 189
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A+ S D T +WD + + + H V S P+G + + S D TI +W
Sbjct: 165 LASCSADMTIKLWDFQGFECIRT----MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.9 bits (76), Expect = 0.042, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
H VH FSP GSS T S D TI +W
Sbjct: 888 HLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Score = 32.3 bits (72), Expect = 0.11, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+AT S D +WDL K + H +V+ FSP LA+ S D T+ +W
Sbjct: 723 LATGSNDFFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 29 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+ HK+AV F+ G +L ++S D I +W+
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.9 bits (76), Expect = 0.042, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
H VH FSP GSS T S D TI +W
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Score = 32.3 bits (72), Expect = 0.11, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+AT S D +WDL K + H +V+ FSP LA+ S D T+ +W
Sbjct: 716 LATGSNDFFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 29 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+ HK+AV F+ G +L ++S D I +W+
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+SS D T +WDLR+ T K + + H+ V+S FSP + + + I +W+
Sbjct: 93 SSSWDKTLRLWDLRTGTTYK----RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFE 65
D IWD R+ T KP T V +H V+ F+P S LAT S D T+ +W N +
Sbjct: 253 DQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 311
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 59
+AT S D T +WDLR++ K + SHK + +SP + LA++ D + +W
Sbjct: 293 LATGSADKTVALWDLRNL---KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFE 65
D IWD R+ T KP T V +H V+ F+P S LAT S D T+ +W N +
Sbjct: 255 DQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 313
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 59
+AT S D T +WDLR++ K + SHK + +SP + LA++ D + +W
Sbjct: 295 LATGSADKTVALWDLRNL---KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN 63
+ D IWD R+ T KP T V +H V+ F+P S LAT S D T+ +W N
Sbjct: 255 ADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Query: 64 FE 65
+
Sbjct: 314 LK 315
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 59
+AT S D T +WDLR++ K + SHK + +SP + LA++ D + +W
Sbjct: 297 LATGSADKTVALWDLRNL---KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Query: 60 S 60
Sbjct: 354 D 354
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.7 bits (73), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 59
+AT S D T +WDLR++ K + SHK + +SP + LA++ D + +W
Sbjct: 289 LATGSADKTVALWDLRNL---KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN 63
+ D IWD RS T KP + V +H V+ F+P S LAT S D T+ +W N
Sbjct: 247 ADDQKLMIWDTRSNNTSKPSHS-VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 305
Query: 64 FE 65
+
Sbjct: 306 LK 307
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 23 PEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
E ++ +H +V FSP G ++A+ S D T+ +W+
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN 44
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V FSP G ++A+ S D T+ +W+
Sbjct: 72 IASASDDKTVKLWNRNGQLLQT-----LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V FSP G ++A+ S D T+ +W+
Sbjct: 195 IASASDDKTVKLWNRNGQLLQT-----LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V FSP G ++A+ S D T+ +W+
Sbjct: 359 IASASDDKTVKLWNRNGQLLQT-----LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V FSP G ++A+ S D T+ +W+
Sbjct: 441 IASASDDKTVKLWNRNGQLLQT-----LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V FSP G ++A+ S D T+ +W+
Sbjct: 482 IASASDDKTVKLWNRNGQLLQT-----LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V FSP G ++A+ S D T+ +W+
Sbjct: 523 IASASDDKTVKLWNRNGQLLQT-----LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V+ F P G ++A+ S D T+ +W+
Sbjct: 236 IASASDDKTVKLWNRNGQLLQT-----LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V FSP G ++A+ S D T+ +W+
Sbjct: 31 IASASDDKTVKLWNRNGQLLQT-----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V FSP G ++A+ S D T+ +W+
Sbjct: 113 IASASDDKTVKLWNRNGQLLQT-----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V FSP G ++A+ S D T+ +W+
Sbjct: 154 IASASDDKTVKLWNRNGQLLQT-----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V FSP G ++A+ S D T+ +W+
Sbjct: 277 IASASDDKTVKLWNRNGQLLQT-----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
+A++S D T +W+ + H +V FSP G ++A+ S D T+ +W+
Sbjct: 318 IASASDDKTVKLWNRNGQ-----HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 66
DGT +WDL + T + + + H + V S FS + + S D TI +W+ +
Sbjct: 84 DGTLRLWDLTTGTTTR----RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 139
Query: 67 TAMIHHNNQTGRWISSFR 84
+ + W+S R
Sbjct: 140 YTV--QDESHSEWVSCVR 155
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 66
DGT +WDL + T + + + H + V S FS + + S D TI +W+ +
Sbjct: 107 DGTLRLWDLTTGTTTR----RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162
Query: 67 TAMIHHNNQTGRWISSFR 84
+ + W+S R
Sbjct: 163 YTV--QDESHSEWVSCVR 178
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 1 MATSSTDGTACIWDLRS-----MATDKPEPTKV-------LSHKRAVHSAYFSPSGSSLA 48
+AT+S D +WD+R + D+ K +H V+ F+ G L
Sbjct: 202 LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261
Query: 49 TTSFDDTIGIWSGVNFENTAM----IHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVE 104
T D+ + +W+ N ENT + + +N++ G F G +F+ T+
Sbjct: 262 TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL---KFTVSCGCSSEFVFVP-YGSTIA 317
Query: 105 VISPAQRRSVATLQSPYISAIPCRFHAHPHQV 136
V + + L+ Y + C F ++ ++
Sbjct: 318 VYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL 349
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
+AT + D IWD+ + +L H++ ++S + PSG L + S D T+ IW
Sbjct: 138 LATGAEDRLIRIWDIENRKI-----VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIW 59
+ + S D T IWDLR+ + + LS + V + SP G +A S D + +W
Sbjct: 180 LVSGSGDRTVRIWDLRT-----GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 60 SGVNFENTAMIHHNNQ--TGRWISSFRAIWGWDDSCIFIGNMTRTVEV 105
+ N+ TG S + ++ D + G++ R+V++
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA 68
HK +V+S F+ G S+ + S D ++ +W+ N N +
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 35 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI 70
+ S FSP G LAT + D I IW + EN ++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIW---DIENRKIV 158
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 27 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAI 86
K L H + V S FSP + + D+ + +W+ V E + T W+S R
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN-VKGECMHTLSRGAHTD-WVSCVRFS 161
Query: 87 WGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ--SPYISAI 125
D I G V+V A R V L+ + Y++++
Sbjct: 162 PSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62
++S D T +WD+ + T + + + HK V S S + + S D TI +W+
Sbjct: 82 SASWDKTLRLWDVATGETYQ----RFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK 137
Query: 63 NFENTAMIHHNNQTGRWISSFRAI 86
++ HN+ W+S R +
Sbjct: 138 GQCLATLLGHND----WVSQVRVV 157
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
M T+S D T IWD ++ K + H V A F P+ + + S D T+ IW+
Sbjct: 201 MITASDDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 61 GVNFE 65
++
Sbjct: 257 SSTYK 261
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62
++S D T +WD+ + T + + + HK V S S + + S D TI +W+
Sbjct: 76 SASWDKTLRLWDVATGETYQ----RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 131
Query: 63 NFENTAMIHHNNQTGRWISSFRAI 86
++ HN+ W+S R +
Sbjct: 132 GQCLATLLGHND----WVSQVRVV 151
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62
++S D T +WD+ + T + + + HK V S S + + S D TI +W+
Sbjct: 82 SASWDKTLRLWDVATGETYQ----RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 63 NFENTAMIHHNNQTGRWISSFRAI 86
++ HN+ W+S R +
Sbjct: 138 GQCLATLLGHND----WVSQVRVV 157
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62
++S D T +WD+ + T + + + HK V S S + + S D TI +W+
Sbjct: 82 SASWDKTLRLWDVATGETYQ----RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 63 NFENTAMIHHNNQTGRWISSFRAI 86
++ HN+ W+S R +
Sbjct: 138 GQCLATLLGHND----WVSQVRVV 157
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62
++S D T +WD+ + T + + + HK V S S + + S D TI +W+
Sbjct: 82 SASWDKTLRLWDVATGETYQ----RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 63 NFENTAMIHHNNQTGRWISSFRAI 86
++ HN+ W+S R +
Sbjct: 138 GQCLATLLGHND----WVSQVRVV 157
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62
++S D T +WD+ + T + + + HK V S S + + S D TI +W+
Sbjct: 82 SASWDKTLRLWDVATGETYQ----RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 63 NFENTAMIHHNNQTGRWISSFRAI 86
++ HN+ W+S R +
Sbjct: 138 GQCLATLLGHND----WVSQVRVV 157
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 85 AIWGWDDSCI-----FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP 133
A W W+ S I +G +VE +PA +R + IS I RF+ HP
Sbjct: 241 AYWKWNGSVIDEDDPVLGEDYYSVE--NPANKRRSTLITVLNISEIESRFYKHP 292
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 85 AIWGWDDSCI-----FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP 133
A W W+ S I +G +VE +PA +R + IS I RF+ HP
Sbjct: 241 AYWKWNGSVIDEDDPVLGEDYYSVE--NPANKRRSTLITVLNISEIESRFYKHP 292
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 27.3 bits (59), Expect = 3.2, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
M T+S D T IWD ++ K + H V A F P+ + + S D T+ IW+
Sbjct: 201 MITASDDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 61 GVNFE 65
++
Sbjct: 257 SSTYK 261
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 85 AIWGWDDSCI-----FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP 133
A W W+ S I +G +VE +PA +R + IS I RF+ HP
Sbjct: 238 AYWKWNGSVIDEDDPVLGEDYYSVE--NPANKRRSTLITVLNISEIESRFYKHP 289
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 85 AIWGWDDSCI-----FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP 133
A W W+ S I +G +VE +PA +R + IS I RF+ HP
Sbjct: 243 AYWKWNGSVIDEDDPVLGEDYYSVE--NPANKRRSTLITVLNISEIESRFYKHP 294
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 12 IWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
IW +MA + ++ H V S SP G+++A+ + D+T+ +W
Sbjct: 359 IWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 12 IWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
IW +MA + ++ H V S SP G+++A+ + D+T+ +W
Sbjct: 348 IWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 12 IWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59
IW +MA + ++ H V S SP G+++A+ + D+T+ +W
Sbjct: 268 IWKYPTMA----KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 44 GSSLATTSFDDTIGIWSGVNFENT-AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRT 102
G+ + + S D+T+ +WS V + ++ H G W S R D+ I G+ RT
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG--GVWSSQMR------DNIIISGSTDRT 180
Query: 103 VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV 136
++V + + TL + S + C H H +V
Sbjct: 181 LKVWNAETGECIHTLYG-HTSTVRC-MHLHEKRV 212
>pdb|1MPG|A Chain A, 3-Methyladenine Dna Glycosylase Ii From Escherichia Coli
pdb|1MPG|B Chain B, 3-Methyladenine Dna Glycosylase Ii From Escherichia Coli
pdb|1DIZ|A Chain A, Crystal Structure Of E. Coli 3-Methyladenine Dna
Glycosylase (Alka) Complexed With Dna
pdb|1DIZ|B Chain B, Crystal Structure Of E. Coli 3-Methyladenine Dna
Glycosylase (Alka) Complexed With Dna
pdb|1PVS|A Chain A, 3-Methyladenine Glcosylase Ii(Alka) Hypoxanthine Complex
pdb|1PVS|B Chain B, 3-Methyladenine Glcosylase Ii(Alka) Hypoxanthine Complex
pdb|3CVS|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVS|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVS|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVS|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:adenine Base Pair
pdb|3CVT|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CVT|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CVT|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CVT|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CW7|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWA|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
8oxoguanine:cytosine Base Pair
pdb|3CWS|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWS|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWS|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWS|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:thymine Base Pair
pdb|3CWT|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWT|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWT|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWT|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxyinosine:adenine Base Pair
pdb|3CWU|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3CWU|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3CWU|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3CWU|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX 2'-Fluoro-
2'-Deoxy-1,N6-Ethenoadenine:thymine Base Pair
pdb|3D4V|A Chain A, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
pdb|3D4V|B Chain B, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
pdb|3D4V|C Chain C, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
pdb|3D4V|D Chain D, Crystal Structure Of An Alka HostGUEST COMPLEX
N7methylguanine:cytosine Base Pair
Length = 282
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 77 GRWISSFRAIWGWDDSCIFIGN---MTRTVEVISPAQRRSVATLQSPYIS 123
GRW +++ A+ GW +F+ + + + ++PAQ R A P+ S
Sbjct: 216 GRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRS 265
>pdb|3OGD|A Chain A, Alka Undamaged Dna Complex: Interrogation Of A G:c Base
Pair
Length = 289
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 77 GRWISSFRAIWGWDDSCIFIGN---MTRTVEVISPAQRRSVATLQSPYIS 123
GRW +++ A+ GW +F+ + + + ++PAQ R A P+ S
Sbjct: 223 GRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRS 272
>pdb|3OH6|A Chain A, Alka Undamaged Dna Complex: Interrogation Of A C:g Base
Pair
pdb|3OH9|A Chain A, Alka Undamaged Dna Complex: Interrogation Of A T:a Base
Pair
Length = 289
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 77 GRWISSFRAIWGWDDSCIFIGN---MTRTVEVISPAQRRSVATLQSPYIS 123
GRW +++ A+ GW +F+ + + + ++PAQ R A P+ S
Sbjct: 223 GRWTANYFALRGWQAKDVFLPDDCLIKQRFPGMTPAQIRRYAERWKPWRS 272
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 26.2 bits (56), Expect = 8.6, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 13/60 (21%)
Query: 22 KPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM--IHHNNQTGRW 79
+PE T ++S K A H GS++A+++ +G +G++ ++ + +HH NQ W
Sbjct: 145 QPEKTVIISRKNAYH-------GSTVASSA----LGGMAGMHAQSGLIPDVHHINQPNWW 193
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
M T+S D T IWD ++ K + H V A F P+ + + S D T+ IW+
Sbjct: 201 MITASDDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 61 GVNFE 65
++
Sbjct: 257 SSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60
M T+S D T IWD ++ K + H V A F P+ + + S D T+ IW+
Sbjct: 201 MITASDDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 61 GVNFE 65
++
Sbjct: 257 SSTYK 261
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 27 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAI 86
K+ H+R + ++ G L + S D + +W +N E + + TG I
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL--DGHTG-------TI 77
Query: 87 WGWDDSCI----FIGNMTRTVEVISPAQRRSVATLQSP 120
W D C G+ ++++ + + VAT +SP
Sbjct: 78 WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSP 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.129 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,948,398
Number of Sequences: 62578
Number of extensions: 178555
Number of successful extensions: 913
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 217
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)