Query 038702
Match_columns 154
No_of_seqs 299 out of 1100
Neff 12.2
Searched_HMMs 46136
Date Fri Mar 29 02:28:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-33 3.5E-38 177.5 9.2 141 1-154 234-375 (459)
2 KOG0279 G protein beta subunit 100.0 3.3E-30 7.2E-35 155.3 14.6 142 2-154 79-222 (315)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-30 2.3E-35 164.9 9.8 141 1-153 276-417 (459)
4 KOG0263 Transcription initiati 100.0 5E-30 1.1E-34 171.8 13.3 141 1-154 466-607 (707)
5 KOG0263 Transcription initiati 100.0 4.4E-30 9.5E-35 172.0 12.4 140 1-153 508-648 (707)
6 KOG0271 Notchless-like WD40 re 100.0 1E-29 2.3E-34 159.3 13.2 141 1-153 130-275 (480)
7 KOG0315 G-protein beta subunit 100.0 4.5E-28 9.8E-33 144.5 14.7 146 1-154 98-288 (311)
8 KOG0266 WD40 repeat-containing 100.0 2.2E-27 4.8E-32 158.9 17.3 144 1-154 218-364 (456)
9 KOG0271 Notchless-like WD40 re 100.0 2.5E-28 5.5E-33 153.1 11.9 140 1-152 339-479 (480)
10 KOG0284 Polyadenylation factor 100.0 3.6E-28 7.9E-33 153.1 10.1 141 1-153 195-336 (464)
11 PTZ00421 coronin; Provisional 100.0 2.9E-26 6.4E-31 153.8 19.0 147 1-154 91-245 (493)
12 KOG0285 Pleiotropic regulator 100.0 3.6E-27 7.9E-32 147.0 13.1 140 1-153 166-306 (460)
13 KOG0286 G-protein beta subunit 99.9 1.4E-26 3.1E-31 140.7 13.5 142 1-152 202-343 (343)
14 PTZ00420 coronin; Provisional 99.9 1.6E-25 3.5E-30 151.5 19.1 147 1-154 90-248 (568)
15 KOG0266 WD40 repeat-containing 99.9 4.4E-26 9.5E-31 152.7 16.2 143 1-154 174-318 (456)
16 KOG0286 G-protein beta subunit 99.9 1.1E-25 2.3E-30 137.0 14.5 142 1-153 159-302 (343)
17 KOG0279 G protein beta subunit 99.9 2.2E-25 4.7E-30 134.7 15.7 147 1-154 31-180 (315)
18 KOG0284 Polyadenylation factor 99.9 5.9E-27 1.3E-31 147.7 9.2 140 1-154 153-294 (464)
19 KOG0291 WD40-repeat-containing 99.9 7.8E-26 1.7E-30 152.0 14.9 142 1-153 365-507 (893)
20 KOG0645 WD40 repeat protein [G 99.9 6.7E-25 1.5E-29 132.2 15.9 142 1-153 30-179 (312)
21 KOG0277 Peroxisomal targeting 99.9 1.8E-25 4E-30 133.7 13.3 144 1-154 76-221 (311)
22 KOG0319 WD40-repeat-containing 99.9 7.8E-26 1.7E-30 151.4 12.9 139 1-152 478-617 (775)
23 KOG0273 Beta-transducin family 99.9 3.7E-25 8.1E-30 141.8 15.1 141 1-154 332-482 (524)
24 KOG0319 WD40-repeat-containing 99.9 1.3E-25 2.9E-30 150.3 13.5 144 1-154 427-577 (775)
25 KOG0277 Peroxisomal targeting 99.9 1.3E-25 2.9E-30 134.3 12.0 142 1-153 120-264 (311)
26 KOG0295 WD40 repeat-containing 99.9 3.4E-25 7.4E-30 138.1 13.6 141 1-154 208-364 (406)
27 KOG0282 mRNA splicing factor [ 99.9 2.6E-26 5.7E-31 147.3 8.5 141 1-154 230-372 (503)
28 KOG0264 Nucleosome remodeling 99.9 8.5E-25 1.8E-29 139.2 13.8 149 1-154 193-347 (422)
29 KOG0276 Vesicle coat complex C 99.9 4.4E-25 9.5E-30 146.1 12.7 140 1-153 112-256 (794)
30 KOG0316 Conserved WD40 repeat- 99.9 1E-24 2.2E-29 129.4 12.2 146 1-153 74-256 (307)
31 KOG0276 Vesicle coat complex C 99.9 3E-24 6.5E-29 142.2 15.6 144 1-154 70-215 (794)
32 KOG0645 WD40 repeat protein [G 99.9 1.3E-23 2.7E-28 126.8 15.9 145 1-152 76-223 (312)
33 KOG0275 Conserved WD40 repeat- 99.9 1.3E-25 2.9E-30 139.0 7.5 146 1-153 228-377 (508)
34 KOG0292 Vesicle coat complex C 99.9 8E-25 1.7E-29 149.7 11.9 141 1-154 24-165 (1202)
35 PTZ00421 coronin; Provisional 99.9 1.5E-23 3.2E-28 140.9 17.9 143 1-154 141-290 (493)
36 KOG0302 Ribosome Assembly prot 99.9 2.2E-24 4.8E-29 135.2 12.8 148 1-154 227-378 (440)
37 PTZ00420 coronin; Provisional 99.9 5.5E-23 1.2E-27 139.3 19.6 146 1-153 141-292 (568)
38 PLN00181 protein SPA1-RELATED; 99.9 1.8E-23 3.9E-28 148.6 18.1 139 1-153 548-689 (793)
39 KOG0281 Beta-TrCP (transducin 99.9 7.3E-25 1.6E-29 136.7 9.0 142 1-153 210-387 (499)
40 KOG0772 Uncharacterized conser 99.9 1.7E-24 3.7E-29 140.5 10.9 125 29-154 265-394 (641)
41 KOG0283 WD40 repeat-containing 99.9 7.7E-24 1.7E-28 143.2 14.4 142 1-153 383-531 (712)
42 KOG0264 Nucleosome remodeling 99.9 2.4E-23 5.3E-28 132.6 15.8 145 1-153 243-403 (422)
43 KOG0281 Beta-TrCP (transducin 99.9 2.2E-25 4.8E-30 139.0 6.3 136 2-154 291-428 (499)
44 KOG0640 mRNA cleavage stimulat 99.9 2.5E-24 5.4E-29 132.5 10.1 148 1-153 187-334 (430)
45 KOG0282 mRNA splicing factor [ 99.9 2.5E-24 5.4E-29 138.3 10.4 146 1-152 315-503 (503)
46 KOG0269 WD40 repeat-containing 99.9 3.4E-24 7.5E-29 144.3 11.0 144 1-153 103-249 (839)
47 KOG0296 Angio-associated migra 99.9 6.9E-23 1.5E-27 127.9 15.8 141 1-153 79-219 (399)
48 KOG0269 WD40 repeat-containing 99.9 4.2E-24 9.1E-29 144.0 11.2 142 1-153 149-295 (839)
49 KOG0315 G-protein beta subunit 99.9 7.6E-23 1.7E-27 122.4 15.2 139 5-153 58-196 (311)
50 KOG0313 Microtubule binding pr 99.9 2.4E-23 5.3E-28 130.5 13.6 145 1-154 208-376 (423)
51 KOG0295 WD40 repeat-containing 99.9 5.6E-23 1.2E-27 128.3 14.2 141 1-153 250-405 (406)
52 KOG0318 WD40 repeat stress pro 99.9 1.3E-22 2.9E-27 131.9 16.4 145 1-153 163-349 (603)
53 KOG0273 Beta-transducin family 99.9 5.3E-23 1.1E-27 132.1 14.1 139 1-153 250-388 (524)
54 KOG0647 mRNA export protein (c 99.9 8E-23 1.7E-27 125.0 14.1 140 1-154 43-184 (347)
55 KOG0267 Microtubule severing p 99.9 2.4E-24 5.2E-29 144.3 7.3 142 1-154 85-226 (825)
56 KOG0310 Conserved WD40 repeat- 99.9 5.4E-23 1.2E-27 132.3 13.0 139 1-153 126-267 (487)
57 KOG0308 Conserved WD40 repeat- 99.9 5.1E-23 1.1E-27 136.7 13.2 147 1-153 88-242 (735)
58 KOG0772 Uncharacterized conser 99.9 1.4E-23 2.9E-28 136.4 9.9 148 1-153 284-444 (641)
59 KOG0278 Serine/threonine kinas 99.9 1.3E-22 2.8E-27 121.6 13.2 138 1-153 158-296 (334)
60 KOG0289 mRNA splicing factor [ 99.9 2.7E-22 5.8E-27 127.9 15.2 143 2-154 277-419 (506)
61 KOG0285 Pleiotropic regulator 99.9 2.7E-23 5.9E-28 129.9 10.5 139 1-153 208-347 (460)
62 KOG0275 Conserved WD40 repeat- 99.9 2.7E-23 5.8E-28 129.0 10.2 145 1-154 278-423 (508)
63 KOG0313 Microtubule binding pr 99.9 1.2E-22 2.6E-27 127.5 12.8 141 1-152 274-416 (423)
64 PLN00181 protein SPA1-RELATED; 99.9 1.2E-21 2.6E-26 139.4 19.3 146 1-154 498-648 (793)
65 KOG1274 WD40 repeat protein [G 99.9 4.3E-22 9.4E-27 136.4 16.1 149 1-154 111-262 (933)
66 KOG1446 Histone H3 (Lys4) meth 99.9 1.9E-21 4.1E-26 119.4 17.1 145 1-154 115-262 (311)
67 KOG0640 mRNA cleavage stimulat 99.9 8.2E-23 1.8E-27 125.9 11.1 147 1-152 127-289 (430)
68 KOG0265 U5 snRNP-specific prot 99.9 1.4E-22 3.1E-27 123.8 11.9 140 1-153 105-245 (338)
69 KOG0293 WD40 repeat-containing 99.9 4.1E-23 8.8E-28 131.1 9.9 146 1-153 284-512 (519)
70 KOG0270 WD40 repeat-containing 99.9 7.7E-22 1.7E-26 125.9 15.6 141 1-154 259-404 (463)
71 KOG0265 U5 snRNP-specific prot 99.9 3.8E-22 8.1E-27 122.0 12.6 145 2-153 190-337 (338)
72 KOG0296 Angio-associated migra 99.9 1.8E-21 4E-26 121.7 15.0 144 1-154 163-398 (399)
73 KOG0294 WD40 repeat-containing 99.9 1.7E-21 3.7E-26 119.9 14.6 148 1-154 100-281 (362)
74 cd00200 WD40 WD40 domain, foun 99.9 2.6E-21 5.6E-26 122.1 15.8 138 2-152 151-289 (289)
75 cd00200 WD40 WD40 domain, foun 99.9 8.3E-21 1.8E-25 119.8 17.9 142 1-154 66-207 (289)
76 KOG0288 WD40 repeat protein Ti 99.9 1.7E-21 3.6E-26 123.6 13.6 143 2-152 316-459 (459)
77 KOG0316 Conserved WD40 repeat- 99.9 1.3E-21 2.8E-26 116.5 11.8 136 2-153 33-172 (307)
78 KOG0274 Cdc4 and related F-box 99.9 1.8E-21 3.9E-26 131.5 14.1 137 1-154 264-400 (537)
79 KOG0291 WD40-repeat-containing 99.9 3.9E-21 8.5E-26 129.8 15.4 140 4-154 326-466 (893)
80 KOG0973 Histone transcription 99.9 2E-21 4.3E-26 134.9 14.1 148 1-153 28-200 (942)
81 KOG4283 Transcription-coupled 99.9 3.1E-21 6.8E-26 118.2 12.9 145 1-153 59-218 (397)
82 KOG0318 WD40 repeat stress pro 99.9 1E-20 2.2E-25 123.3 15.7 142 1-153 458-601 (603)
83 KOG4328 WD40 protein [Function 99.9 3.6E-21 7.8E-26 123.4 13.4 152 1-152 338-493 (498)
84 KOG0305 Anaphase promoting com 99.9 5.1E-21 1.1E-25 126.2 14.5 140 1-153 316-460 (484)
85 KOG0643 Translation initiation 99.9 5.6E-21 1.2E-25 115.5 13.4 147 1-153 25-219 (327)
86 KOG0292 Vesicle coat complex C 99.9 4.6E-21 1E-25 131.7 14.5 140 1-153 66-235 (1202)
87 KOG0303 Actin-binding protein 99.9 4.2E-21 9.1E-26 121.4 13.1 145 1-153 97-248 (472)
88 KOG1273 WD40 repeat protein [G 99.9 1.2E-20 2.6E-25 116.5 13.8 147 1-154 38-226 (405)
89 KOG0274 Cdc4 and related F-box 99.9 5.2E-21 1.1E-25 129.3 13.1 134 2-153 305-440 (537)
90 KOG0305 Anaphase promoting com 99.9 5.8E-21 1.3E-25 125.9 12.5 141 1-153 232-375 (484)
91 KOG0306 WD40-repeat-containing 99.9 6.7E-21 1.5E-25 128.7 12.5 140 1-153 523-663 (888)
92 KOG1332 Vesicle coat complex C 99.9 1.1E-20 2.4E-25 112.9 12.1 148 1-154 26-193 (299)
93 KOG1188 WD40 repeat protein [G 99.9 1.9E-20 4.1E-25 116.4 12.8 146 1-153 43-195 (376)
94 KOG1407 WD40 repeat protein [F 99.9 7.2E-20 1.6E-24 110.4 14.0 140 1-154 80-219 (313)
95 KOG0306 WD40-repeat-containing 99.9 2.9E-20 6.2E-25 125.7 13.3 146 2-154 428-580 (888)
96 KOG0283 WD40 repeat-containing 99.9 5.7E-20 1.2E-24 124.8 14.8 146 1-154 425-576 (712)
97 KOG0293 WD40 repeat-containing 99.9 3.1E-20 6.6E-25 118.2 12.1 121 30-154 222-342 (519)
98 KOG0308 Conserved WD40 repeat- 99.9 9.9E-20 2.1E-24 121.3 14.9 144 1-153 133-284 (735)
99 KOG0647 mRNA export protein (c 99.8 4.9E-20 1.1E-24 113.0 11.2 119 30-153 25-144 (347)
100 KOG0302 Ribosome Assembly prot 99.8 1.4E-19 3.1E-24 113.9 13.4 145 1-149 273-434 (440)
101 KOG0639 Transducin-like enhanc 99.8 4.6E-20 9.9E-25 120.2 10.5 145 2-153 435-580 (705)
102 KOG0268 Sof1-like rRNA process 99.8 2.8E-20 6.2E-25 116.6 8.6 141 1-152 203-343 (433)
103 KOG0646 WD40 repeat protein [G 99.8 4.3E-19 9.3E-24 114.1 13.9 144 2-153 97-246 (476)
104 KOG0267 Microtubule severing p 99.8 1.5E-20 3.2E-25 126.5 7.3 140 1-153 43-183 (825)
105 KOG0310 Conserved WD40 repeat- 99.8 6.9E-19 1.5E-23 113.7 14.4 137 1-150 169-305 (487)
106 KOG0646 WD40 repeat protein [G 99.8 2.9E-18 6.4E-23 110.3 16.3 147 1-154 138-307 (476)
107 KOG0294 WD40 repeat-containing 99.8 2E-18 4.4E-23 106.6 14.3 108 1-118 56-166 (362)
108 KOG1036 Mitotic spindle checkp 99.8 1.2E-18 2.6E-23 107.0 13.3 135 1-153 28-162 (323)
109 KOG0290 Conserved WD40 repeat- 99.8 9.7E-19 2.1E-23 107.1 12.6 149 1-154 166-318 (364)
110 KOG0322 G-protein beta subunit 99.8 1.1E-19 2.4E-24 109.8 8.2 145 1-153 168-322 (323)
111 KOG0289 mRNA splicing factor [ 99.8 1.8E-18 3.9E-23 110.7 13.7 143 1-154 234-377 (506)
112 KOG1332 Vesicle coat complex C 99.8 3.5E-19 7.7E-24 106.6 9.3 147 1-153 73-240 (299)
113 KOG1446 Histone H3 (Lys4) meth 99.8 9.1E-18 2E-22 103.4 15.6 134 6-152 78-215 (311)
114 KOG2096 WD40 repeat protein [G 99.8 9.7E-19 2.1E-23 108.4 11.3 115 31-154 186-308 (420)
115 KOG0641 WD40 repeat protein [G 99.8 7.2E-18 1.6E-22 100.4 14.5 140 1-153 197-348 (350)
116 KOG0300 WD40 repeat-containing 99.8 3.2E-19 7E-24 110.7 9.1 146 1-153 163-343 (481)
117 KOG4328 WD40 protein [Function 99.8 5.1E-19 1.1E-23 113.7 10.3 148 1-153 203-352 (498)
118 KOG0639 Transducin-like enhanc 99.8 4.8E-19 1E-23 115.6 9.6 144 2-153 525-703 (705)
119 KOG0973 Histone transcription 99.8 1.6E-18 3.5E-23 120.7 12.8 147 1-153 144-354 (942)
120 KOG0288 WD40 repeat protein Ti 99.8 4.9E-19 1.1E-23 112.5 9.4 147 2-153 235-416 (459)
121 KOG0299 U3 snoRNP-associated p 99.8 1.6E-18 3.5E-23 111.4 11.3 138 1-153 217-355 (479)
122 KOG1009 Chromatin assembly com 99.8 8.1E-19 1.8E-23 111.3 9.8 147 1-152 29-193 (434)
123 KOG0278 Serine/threonine kinas 99.8 1.8E-18 3.9E-23 104.1 10.5 140 1-154 115-254 (334)
124 KOG0303 Actin-binding protein 99.8 1.6E-18 3.5E-23 109.9 10.7 124 26-153 75-202 (472)
125 KOG2048 WD40 repeat protein [G 99.8 2.3E-17 5E-22 110.5 15.9 145 1-154 83-233 (691)
126 KOG0299 U3 snoRNP-associated p 99.8 3.4E-18 7.4E-23 109.9 11.5 141 1-153 259-409 (479)
127 KOG4283 Transcription-coupled 99.8 7E-18 1.5E-22 103.7 11.9 141 1-153 117-275 (397)
128 KOG1445 Tumor-specific antigen 99.8 3.3E-18 7.1E-23 114.7 11.0 145 1-153 643-797 (1012)
129 KOG0301 Phospholipase A2-activ 99.8 1.7E-17 3.7E-22 111.5 14.3 134 1-153 154-287 (745)
130 KOG0307 Vesicle coat complex C 99.8 9.4E-19 2E-23 122.6 8.7 150 1-153 83-239 (1049)
131 KOG0301 Phospholipase A2-activ 99.8 5.4E-18 1.2E-22 113.8 11.8 135 1-154 115-249 (745)
132 KOG0771 Prolactin regulatory e 99.8 1.4E-17 3E-22 106.0 12.7 145 1-152 159-352 (398)
133 KOG1034 Transcriptional repres 99.8 2.6E-17 5.7E-22 102.3 13.6 147 1-153 151-382 (385)
134 KOG1407 WD40 repeat protein [F 99.8 4.7E-17 1E-21 98.4 13.9 133 7-152 168-309 (313)
135 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-17 2.3E-22 109.2 11.9 144 1-153 94-238 (673)
136 KOG0641 WD40 repeat protein [G 99.8 9.8E-17 2.1E-21 95.7 15.0 143 4-154 159-303 (350)
137 KOG0270 WD40 repeat-containing 99.8 1.1E-17 2.5E-22 107.2 11.2 145 1-153 195-359 (463)
138 KOG0268 Sof1-like rRNA process 99.8 8.5E-18 1.8E-22 105.7 9.8 114 31-153 186-301 (433)
139 KOG0321 WD40 repeat-containing 99.8 1.9E-17 4.2E-22 110.4 12.0 150 1-153 115-300 (720)
140 KOG2055 WD40 repeat protein [G 99.8 1.4E-16 3E-21 102.9 15.3 149 1-153 228-416 (514)
141 KOG1445 Tumor-specific antigen 99.8 1.8E-17 3.9E-22 111.2 11.1 145 1-153 693-843 (1012)
142 KOG1036 Mitotic spindle checkp 99.8 1.7E-16 3.7E-21 97.7 14.0 136 1-150 68-203 (323)
143 PF08662 eIF2A: Eukaryotic tra 99.8 2.7E-16 5.8E-21 94.7 14.8 112 30-154 57-179 (194)
144 KOG1408 WD40 repeat protein [F 99.8 7.8E-17 1.7E-21 109.4 13.5 148 1-153 519-670 (1080)
145 KOG0307 Vesicle coat complex C 99.7 7.1E-18 1.5E-22 118.3 8.3 145 1-154 132-284 (1049)
146 KOG2048 WD40 repeat protein [G 99.7 5.5E-16 1.2E-20 104.0 16.7 143 1-154 40-184 (691)
147 KOG1007 WD repeat protein TSSC 99.7 7.2E-17 1.6E-21 99.0 11.4 144 3-153 139-288 (370)
148 KOG1539 WD repeat protein [Gen 99.7 4.2E-17 9.1E-22 111.6 11.2 137 1-152 508-646 (910)
149 KOG1274 WD40 repeat protein [G 99.7 5.4E-16 1.2E-20 107.2 15.5 142 1-153 69-217 (933)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.7E-15 3.8E-20 96.9 16.9 138 1-153 4-144 (300)
151 KOG2110 Uncharacterized conser 99.7 4.6E-15 1E-19 93.6 17.6 97 6-109 151-248 (391)
152 KOG0643 Translation initiation 99.7 1.3E-16 2.8E-21 96.8 10.2 139 1-152 162-315 (327)
153 KOG1034 Transcriptional repres 99.7 1E-16 2.3E-21 99.7 9.0 105 1-111 108-213 (385)
154 KOG0300 WD40 repeat-containing 99.7 6E-16 1.3E-20 96.4 12.3 141 1-154 287-428 (481)
155 KOG2110 Uncharacterized conser 99.7 3.4E-15 7.4E-20 94.2 15.5 139 7-154 105-248 (391)
156 KOG2096 WD40 repeat protein [G 99.7 8.6E-16 1.9E-20 95.6 12.6 121 29-153 83-257 (420)
157 KOG1063 RNA polymerase II elon 99.7 7.7E-16 1.7E-20 103.8 13.1 139 9-153 553-698 (764)
158 KOG1408 WD40 repeat protein [F 99.7 5.6E-16 1.2E-20 105.4 12.4 116 32-153 596-712 (1080)
159 KOG1007 WD repeat protein TSSC 99.7 1.2E-15 2.6E-20 93.7 12.6 139 3-151 188-358 (370)
160 KOG0321 WD40 repeat-containing 99.7 1.2E-15 2.7E-20 102.0 13.0 150 1-153 232-390 (720)
161 KOG2445 Nuclear pore complex c 99.7 4.3E-15 9.3E-20 91.9 14.3 152 1-152 28-205 (361)
162 KOG2106 Uncharacterized conser 99.7 7.4E-15 1.6E-19 96.2 15.9 137 1-153 383-520 (626)
163 KOG4378 Nuclear protein COP1 [ 99.7 9.4E-16 2E-20 100.3 11.6 121 1-133 180-303 (673)
164 KOG4227 WD40 repeat protein [G 99.7 2.4E-15 5.2E-20 96.2 12.2 150 1-153 71-224 (609)
165 KOG0642 Cell-cycle nuclear pro 99.7 2.2E-15 4.8E-20 99.4 12.2 150 1-154 359-561 (577)
166 KOG2055 WD40 repeat protein [G 99.7 5.6E-15 1.2E-19 95.6 13.4 143 1-153 318-511 (514)
167 KOG2919 Guanine nucleotide-bin 99.7 3.8E-15 8.3E-20 92.8 12.2 145 3-154 174-327 (406)
168 KOG2394 WD40 protein DMR-N9 [G 99.7 9.3E-16 2E-20 100.9 9.7 94 32-132 290-383 (636)
169 KOG1063 RNA polymerase II elon 99.7 1.2E-15 2.5E-20 102.9 10.4 121 25-153 518-647 (764)
170 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 4E-14 8.8E-19 90.6 17.2 138 2-154 47-187 (300)
171 KOG1273 WD40 repeat protein [G 99.7 3.2E-15 6.9E-20 92.9 11.4 108 30-146 22-129 (405)
172 KOG0974 WD-repeat protein WDR6 99.7 3.8E-15 8.3E-20 104.1 12.5 140 1-153 148-287 (967)
173 KOG1539 WD repeat protein [Gen 99.6 1.9E-14 4.2E-19 98.9 14.5 141 1-152 175-316 (910)
174 KOG0642 Cell-cycle nuclear pro 99.6 3E-15 6.4E-20 98.8 9.5 129 1-132 309-448 (577)
175 KOG2919 Guanine nucleotide-bin 99.6 2.2E-14 4.7E-19 89.6 12.4 148 1-154 126-281 (406)
176 KOG1587 Cytoplasmic dynein int 99.6 3.3E-14 7E-19 96.6 12.8 151 1-153 258-471 (555)
177 KOG1517 Guanine nucleotide bin 99.6 3.3E-14 7.1E-19 100.4 12.9 148 1-154 1180-1333(1387)
178 KOG1310 WD40 repeat protein [G 99.6 9.7E-15 2.1E-19 96.8 9.2 122 26-153 44-177 (758)
179 KOG0649 WD40 repeat protein [G 99.6 1.2E-13 2.7E-18 83.3 12.2 145 1-153 25-185 (325)
180 KOG0649 WD40 repeat protein [G 99.6 1.9E-13 4.1E-18 82.5 12.9 138 1-153 129-273 (325)
181 KOG1240 Protein kinase contain 99.6 2.2E-13 4.8E-18 97.4 15.2 151 1-154 1064-1225(1431)
182 KOG2111 Uncharacterized conser 99.6 1.2E-12 2.6E-17 81.5 16.6 102 4-110 155-257 (346)
183 KOG2445 Nuclear pore complex c 99.6 1.9E-13 4.1E-18 84.8 13.1 120 30-153 11-143 (361)
184 KOG2106 Uncharacterized conser 99.6 1.8E-13 3.9E-18 89.9 13.6 113 29-154 365-477 (626)
185 KOG3881 Uncharacterized conser 99.6 2E-13 4.3E-18 86.9 13.1 146 2-154 165-320 (412)
186 KOG1188 WD40 repeat protein [G 99.6 1.4E-13 3E-18 86.3 11.8 144 1-153 87-241 (376)
187 COG2319 FOG: WD40 repeat [Gene 99.6 7.3E-13 1.6E-17 87.8 16.0 136 5-153 131-270 (466)
188 KOG4227 WD40 repeat protein [G 99.6 7.6E-14 1.6E-18 89.5 10.2 124 28-153 52-178 (609)
189 KOG2394 WD40 protein DMR-N9 [G 99.6 1.1E-13 2.4E-18 91.4 10.6 144 2-153 189-361 (636)
190 KOG1524 WD40 repeat-containing 99.5 6.7E-14 1.5E-18 92.7 9.5 138 1-153 78-215 (737)
191 KOG2111 Uncharacterized conser 99.5 2.7E-12 5.8E-17 80.0 15.3 140 6-153 111-255 (346)
192 KOG1538 Uncharacterized conser 99.5 1.9E-12 4.1E-17 88.2 15.5 142 7-154 32-211 (1081)
193 COG2319 FOG: WD40 repeat [Gene 99.5 3.6E-12 7.9E-17 84.5 16.9 140 2-153 171-313 (466)
194 KOG1310 WD40 repeat protein [G 99.5 1.3E-13 2.8E-18 91.6 9.6 143 1-153 65-230 (758)
195 PF08662 eIF2A: Eukaryotic tra 99.5 8.1E-13 1.7E-17 79.7 11.6 101 2-117 77-186 (194)
196 KOG1009 Chromatin assembly com 99.5 7.4E-13 1.6E-17 84.8 11.4 118 31-153 12-152 (434)
197 KOG1523 Actin-related protein 99.5 8E-13 1.7E-17 82.4 11.2 142 1-152 25-174 (361)
198 PRK01742 tolB translocation pr 99.5 1.4E-12 3.1E-17 87.7 13.4 132 7-153 183-321 (429)
199 PRK11028 6-phosphogluconolacto 99.5 1E-11 2.2E-16 81.1 16.9 144 2-154 6-156 (330)
200 KOG0290 Conserved WD40 repeat- 99.5 1.1E-12 2.4E-17 81.1 11.4 142 6-153 119-273 (364)
201 KOG0650 WD40 repeat nucleolar 99.5 1.5E-12 3.3E-17 87.2 12.6 55 1-61 415-471 (733)
202 PRK11028 6-phosphogluconolacto 99.5 1.3E-11 2.9E-16 80.5 16.1 151 2-153 142-303 (330)
203 KOG2139 WD40 repeat protein [G 99.5 9.7E-12 2.1E-16 79.0 14.1 140 1-153 113-267 (445)
204 KOG1517 Guanine nucleotide bin 99.5 2.3E-12 5.1E-17 91.4 12.2 146 1-153 1224-1380(1387)
205 KOG1523 Actin-related protein 99.5 4.1E-12 8.9E-17 79.3 11.6 148 1-153 70-235 (361)
206 KOG1963 WD40 repeat protein [G 99.4 1.6E-11 3.4E-16 85.1 15.1 146 1-153 220-374 (792)
207 KOG1587 Cytoplasmic dynein int 99.4 5.1E-12 1.1E-16 86.1 12.6 145 1-153 363-515 (555)
208 PF02239 Cytochrom_D1: Cytochr 99.4 9.2E-11 2E-15 77.3 17.5 141 2-153 10-157 (369)
209 KOG0644 Uncharacterized conser 99.4 1.1E-13 2.5E-18 95.7 3.6 113 28-153 186-299 (1113)
210 KOG0644 Uncharacterized conser 99.4 1E-12 2.2E-17 91.2 6.8 143 1-153 247-425 (1113)
211 KOG2321 WD40 repeat protein [G 99.4 1.7E-11 3.7E-16 82.0 11.7 147 2-153 149-301 (703)
212 KOG2139 WD40 repeat protein [G 99.4 1.1E-10 2.3E-15 74.4 14.6 136 2-148 157-305 (445)
213 KOG1272 WD40-repeat-containing 99.4 4.6E-12 9.9E-17 82.7 8.5 135 1-151 224-359 (545)
214 KOG2695 WD40 repeat protein [G 99.4 8E-12 1.7E-16 79.0 8.2 138 5-154 231-376 (425)
215 KOG1272 WD40-repeat-containing 99.4 2.6E-12 5.6E-17 83.8 6.2 116 31-154 208-323 (545)
216 KOG2321 WD40 repeat protein [G 99.3 3.5E-11 7.5E-16 80.6 10.7 142 1-151 190-340 (703)
217 KOG2695 WD40 repeat protein [G 99.3 1.8E-11 4E-16 77.4 8.5 115 2-120 268-387 (425)
218 KOG0650 WD40 repeat nucleolar 99.3 1.1E-11 2.3E-16 83.3 7.6 137 6-151 585-732 (733)
219 KOG0322 G-protein beta subunit 99.3 1.8E-11 3.9E-16 74.9 7.9 102 2-108 221-322 (323)
220 PRK05137 tolB translocation pr 99.3 5.2E-10 1.1E-14 75.7 15.8 131 8-153 182-321 (435)
221 PRK01742 tolB translocation pr 99.3 1.6E-10 3.5E-15 77.9 13.3 131 4-153 266-400 (429)
222 KOG0974 WD-repeat protein WDR6 99.3 2E-10 4.4E-15 81.2 13.7 136 2-153 103-245 (967)
223 KOG1963 WD40 repeat protein [G 99.3 1.5E-10 3.3E-15 80.4 12.9 138 7-152 180-320 (792)
224 PRK03629 tolB translocation pr 99.3 9.7E-10 2.1E-14 74.2 16.2 128 9-151 180-314 (429)
225 KOG4497 Uncharacterized conser 99.3 2.5E-10 5.3E-15 72.1 12.2 137 2-152 65-238 (447)
226 KOG1524 WD40 repeat-containing 99.3 1.1E-10 2.4E-15 77.9 11.2 97 1-109 119-216 (737)
227 KOG3914 WD repeat protein WDR4 99.3 2.9E-10 6.4E-15 73.0 11.8 141 2-153 78-222 (390)
228 KOG1064 RAVE (regulator of V-A 99.3 1.7E-11 3.6E-16 91.1 7.1 136 2-154 2224-2398(2439)
229 KOG0771 Prolactin regulatory e 99.3 6.5E-11 1.4E-15 76.2 8.7 110 36-153 148-263 (398)
230 KOG3914 WD repeat protein WDR4 99.3 4.7E-11 1E-15 76.5 7.7 104 5-118 129-232 (390)
231 KOG0280 Uncharacterized conser 99.3 1.2E-09 2.6E-14 68.0 13.4 114 35-153 124-240 (339)
232 PRK03629 tolB translocation pr 99.2 1.9E-09 4.2E-14 72.8 15.6 129 9-153 268-405 (429)
233 KOG2315 Predicted translation 99.2 6.6E-10 1.4E-14 74.2 13.0 111 30-153 268-389 (566)
234 PRK05137 tolB translocation pr 99.2 1.9E-09 4.1E-14 73.0 15.5 132 7-153 225-365 (435)
235 KOG3881 Uncharacterized conser 99.2 1.4E-10 3E-15 74.3 9.1 110 1-118 219-329 (412)
236 PRK04922 tolB translocation pr 99.2 2.7E-09 5.9E-14 72.2 15.7 133 7-154 227-368 (433)
237 PRK02889 tolB translocation pr 99.2 1.2E-09 2.6E-14 73.7 13.1 130 8-152 176-312 (427)
238 PRK04922 tolB translocation pr 99.2 1.2E-09 2.6E-14 73.9 12.9 131 8-153 184-323 (433)
239 TIGR02800 propeller_TolB tol-p 99.2 6.9E-09 1.5E-13 69.9 16.3 131 8-153 214-353 (417)
240 PF00400 WD40: WD domain, G-be 99.2 2E-10 4.3E-15 51.1 5.7 35 26-60 5-39 (39)
241 PRK02889 tolB translocation pr 99.2 7.7E-09 1.7E-13 69.9 15.7 132 8-154 220-360 (427)
242 KOG4547 WD40 repeat-containing 99.2 3.2E-09 7E-14 71.2 13.4 140 2-152 74-218 (541)
243 KOG0280 Uncharacterized conser 99.1 8E-10 1.7E-14 68.7 8.8 127 2-136 137-266 (339)
244 TIGR02800 propeller_TolB tol-p 99.1 1.4E-08 3.1E-13 68.4 15.5 130 9-153 171-309 (417)
245 KOG1334 WD40 repeat protein [G 99.1 2.8E-10 6.1E-15 74.9 6.5 147 1-153 157-311 (559)
246 KOG1538 Uncharacterized conser 99.1 2.9E-09 6.2E-14 73.2 11.4 111 34-152 14-160 (1081)
247 PRK00178 tolB translocation pr 99.1 2.5E-08 5.3E-13 67.6 15.5 130 9-153 180-318 (430)
248 KOG1240 Protein kinase contain 99.1 9.6E-09 2.1E-13 74.6 12.9 148 2-153 1167-1333(1431)
249 PF02239 Cytochrom_D1: Cytochr 99.1 1.2E-07 2.6E-12 62.9 17.2 145 2-153 52-201 (369)
250 KOG1334 WD40 repeat protein [G 99.1 5.2E-10 1.1E-14 73.7 6.1 147 1-153 297-465 (559)
251 KOG4190 Uncharacterized conser 99.0 3.4E-09 7.5E-14 71.6 9.7 149 1-153 750-905 (1034)
252 PLN02919 haloacid dehalogenase 99.0 1.3E-07 2.7E-12 70.3 17.9 152 2-154 699-888 (1057)
253 PRK00178 tolB translocation pr 99.0 1.3E-07 2.8E-12 64.1 15.4 131 8-153 223-362 (430)
254 PF00400 WD40: WD domain, G-be 99.0 3.6E-09 7.7E-14 47.0 5.5 39 111-152 1-39 (39)
255 KOG4532 WD40-like repeat conta 99.0 8E-08 1.7E-12 59.5 12.6 143 1-153 87-232 (344)
256 KOG1275 PAB-dependent poly(A) 99.0 1.4E-08 3.1E-13 71.9 10.4 139 1-152 190-340 (1118)
257 PRK04792 tolB translocation pr 99.0 6.7E-08 1.4E-12 65.8 13.4 130 9-153 199-337 (448)
258 PF11768 DUF3312: Protein of u 98.9 5.3E-08 1.2E-12 65.9 11.6 73 30-109 257-329 (545)
259 KOG1064 RAVE (regulator of V-A 98.9 2.6E-09 5.6E-14 80.1 5.8 125 5-147 2312-2439(2439)
260 KOG4714 Nucleoporin [Nuclear s 98.9 5.8E-09 1.3E-13 64.1 5.9 142 1-153 104-253 (319)
261 COG4946 Uncharacterized protei 98.9 2.9E-07 6.2E-12 61.4 13.4 126 1-140 374-504 (668)
262 PF10282 Lactonase: Lactonase, 98.9 8.9E-07 1.9E-11 58.4 15.8 143 7-153 165-321 (345)
263 KOG1354 Serine/threonine prote 98.9 1.5E-08 3.3E-13 64.6 7.0 148 4-153 181-358 (433)
264 KOG0309 Conserved WD40 repeat- 98.9 6.8E-09 1.5E-13 72.1 5.9 136 9-153 92-231 (1081)
265 PRK04792 tolB translocation pr 98.9 5.5E-07 1.2E-11 61.4 14.9 130 9-153 243-381 (448)
266 PRK01029 tolB translocation pr 98.8 9E-07 1.9E-11 60.0 15.6 134 9-154 212-359 (428)
267 KOG4547 WD40 repeat-containing 98.8 8.9E-07 1.9E-11 60.0 14.9 142 1-154 8-172 (541)
268 KOG2066 Vacuolar assembly/sort 98.8 5.2E-07 1.1E-11 63.4 13.7 136 1-152 86-231 (846)
269 KOG4532 WD40-like repeat conta 98.8 1.8E-06 4E-11 53.7 14.4 141 2-153 132-281 (344)
270 PF11768 DUF3312: Protein of u 98.8 1.3E-07 2.9E-12 64.1 10.2 67 82-153 262-328 (545)
271 COG4946 Uncharacterized protei 98.8 2.9E-06 6.3E-11 56.8 15.9 117 29-154 356-477 (668)
272 KOG4714 Nucleoporin [Nuclear s 98.7 2.1E-07 4.6E-12 57.4 8.5 59 1-63 195-255 (319)
273 KOG2041 WD40 repeat protein [G 98.7 1.8E-07 3.9E-12 65.3 8.8 146 1-154 29-186 (1189)
274 KOG1409 Uncharacterized conser 98.7 2.2E-06 4.7E-11 55.0 12.4 68 84-154 202-270 (404)
275 KOG1354 Serine/threonine prote 98.7 7.7E-07 1.7E-11 57.1 10.4 108 2-110 230-360 (433)
276 PRK01029 tolB translocation pr 98.7 4.6E-06 1E-10 56.6 14.3 130 9-151 166-308 (428)
277 PRK04043 tolB translocation pr 98.6 1.2E-05 2.6E-10 54.5 16.0 130 7-153 212-356 (419)
278 KOG1912 WD40 repeat protein [G 98.6 6.5E-07 1.4E-11 63.0 9.6 105 1-111 440-553 (1062)
279 PF10282 Lactonase: Lactonase, 98.6 1.8E-05 4E-10 52.4 15.8 149 2-154 3-174 (345)
280 KOG4497 Uncharacterized conser 98.6 4.3E-07 9.4E-12 57.9 7.3 107 37-153 13-121 (447)
281 PLN02919 haloacid dehalogenase 98.6 2.7E-05 5.8E-10 58.5 17.2 119 35-154 685-833 (1057)
282 KOG1409 Uncharacterized conser 98.6 1.3E-07 2.7E-12 60.4 4.7 61 1-64 212-272 (404)
283 COG5354 Uncharacterized protei 98.6 5E-06 1.1E-10 55.9 11.9 128 8-153 255-394 (561)
284 PF15492 Nbas_N: Neuroblastoma 98.5 3.3E-05 7.2E-10 48.5 14.3 30 34-63 45-74 (282)
285 TIGR02658 TTQ_MADH_Hv methylam 98.5 3.1E-05 6.8E-10 51.0 14.6 107 8-120 27-147 (352)
286 KOG2041 WD40 repeat protein [G 98.5 2.1E-06 4.4E-11 60.3 9.4 118 31-149 13-140 (1189)
287 TIGR03300 assembly_YfgL outer 98.5 1.6E-05 3.4E-10 53.2 13.5 132 2-151 245-376 (377)
288 COG2706 3-carboxymuconate cycl 98.4 0.00011 2.4E-09 47.6 16.9 144 6-153 109-273 (346)
289 PF04762 IKI3: IKI3 family; I 98.4 2.9E-05 6.3E-10 57.5 14.3 145 2-152 91-287 (928)
290 KOG4190 Uncharacterized conser 98.4 4.9E-07 1.1E-11 61.6 4.9 125 25-153 728-858 (1034)
291 KOG2066 Vacuolar assembly/sort 98.4 2E-05 4.4E-10 55.8 12.6 130 1-153 52-186 (846)
292 KOG0309 Conserved WD40 repeat- 98.4 1.1E-06 2.3E-11 61.7 6.4 142 3-154 175-339 (1081)
293 KOG1645 RING-finger-containing 98.4 2.4E-06 5.1E-11 55.9 7.1 77 30-112 191-269 (463)
294 COG5170 CDC55 Serine/threonine 98.4 1.6E-06 3.5E-11 55.1 6.1 121 30-153 170-308 (460)
295 COG2706 3-carboxymuconate cycl 98.4 0.00017 3.8E-09 46.7 15.5 141 9-153 168-320 (346)
296 KOG2314 Translation initiation 98.3 1.8E-05 4E-10 54.0 10.6 109 34-152 212-332 (698)
297 KOG1912 WD40 repeat protein [G 98.3 4.8E-05 1E-09 54.1 12.8 135 7-152 34-184 (1062)
298 PF13360 PQQ_2: PQQ-like domai 98.3 0.00013 2.9E-09 45.5 14.1 134 6-154 1-140 (238)
299 PRK04043 tolB translocation pr 98.3 0.00019 4.1E-09 48.8 15.4 111 33-153 188-308 (419)
300 KOG4640 Anaphase-promoting com 98.3 8.2E-06 1.8E-10 56.3 8.6 81 31-116 19-99 (665)
301 KOG2315 Predicted translation 98.3 1.8E-05 3.9E-10 53.8 9.8 71 32-109 311-390 (566)
302 KOG2314 Translation initiation 98.3 6.4E-05 1.4E-09 51.5 12.2 133 10-153 427-572 (698)
303 smart00320 WD40 WD40 repeats. 98.3 4.6E-06 1E-10 35.8 4.9 32 29-60 9-40 (40)
304 PRK02888 nitrous-oxide reducta 98.2 0.00016 3.5E-09 50.8 13.4 67 84-154 325-404 (635)
305 KOG1008 Uncharacterized conser 98.2 9.7E-07 2.1E-11 60.9 2.3 141 6-154 127-275 (783)
306 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00034 7.3E-09 46.3 13.6 93 54-154 27-136 (352)
307 COG5170 CDC55 Serine/threonine 98.1 8E-06 1.7E-10 52.1 5.2 146 4-151 189-364 (460)
308 PF04762 IKI3: IKI3 family; I 98.1 0.00023 5.1E-09 52.9 13.1 135 8-152 237-377 (928)
309 KOG1920 IkappaB kinase complex 98.1 0.00061 1.3E-08 50.9 14.5 141 2-152 84-272 (1265)
310 KOG2114 Vacuolar assembly/sort 98.1 0.00093 2E-08 48.3 14.9 138 9-153 93-242 (933)
311 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.00074 1.6E-08 42.5 13.3 125 2-139 27-151 (354)
312 KOG1275 PAB-dependent poly(A) 98.1 8.8E-05 1.9E-09 53.7 9.9 131 4-152 153-294 (1118)
313 KOG0882 Cyclophilin-related pe 98.1 2.9E-05 6.2E-10 51.8 7.0 145 2-153 24-173 (558)
314 TIGR03300 assembly_YfgL outer 98.0 0.00064 1.4E-08 45.7 13.3 135 2-153 69-207 (377)
315 KOG1008 Uncharacterized conser 98.0 2.1E-06 4.6E-11 59.3 1.4 143 1-152 73-223 (783)
316 COG5354 Uncharacterized protei 98.0 0.00013 2.9E-09 49.4 9.2 112 31-152 31-158 (561)
317 PRK11138 outer membrane biogen 98.0 0.0011 2.4E-08 44.9 13.8 133 3-153 261-393 (394)
318 KOG4640 Anaphase-promoting com 98.0 6.9E-05 1.5E-09 52.0 7.9 70 82-154 23-92 (665)
319 KOG1645 RING-finger-containing 98.0 0.00021 4.6E-09 47.2 9.6 61 2-67 210-271 (463)
320 PF13360 PQQ_2: PQQ-like domai 98.0 0.0013 2.7E-08 41.1 13.6 110 2-119 40-150 (238)
321 COG0823 TolB Periplasmic compo 97.9 0.00084 1.8E-08 45.8 12.4 122 8-144 218-345 (425)
322 KOG3617 WD40 and TPR repeat-co 97.9 0.00015 3.2E-09 52.5 8.9 59 1-63 74-132 (1416)
323 smart00320 WD40 WD40 repeats. 97.9 7.8E-05 1.7E-09 31.7 5.0 37 113-152 4-40 (40)
324 PF08450 SGL: SMP-30/Gluconola 97.8 0.0022 4.9E-08 40.4 16.6 115 32-154 85-213 (246)
325 KOG3621 WD40 repeat-containing 97.8 0.00081 1.8E-08 47.5 11.0 118 31-153 32-153 (726)
326 KOG2079 Vacuolar assembly/sort 97.8 0.00015 3.3E-09 53.3 7.7 95 2-102 103-198 (1206)
327 KOG3621 WD40 repeat-containing 97.8 0.00021 4.6E-09 50.2 8.1 106 1-110 48-155 (726)
328 PF14727 PHTB1_N: PTHB1 N-term 97.8 0.0041 8.8E-08 42.3 15.0 143 1-152 40-202 (418)
329 PF12894 Apc4_WD40: Anaphase-p 97.8 0.00024 5.2E-09 32.6 5.7 32 31-62 10-41 (47)
330 KOG2444 WD40 repeat protein [G 97.8 0.00024 5.3E-09 43.5 7.1 106 43-153 69-176 (238)
331 PRK02888 nitrous-oxide reducta 97.8 0.0022 4.7E-08 45.5 12.3 101 7-110 295-405 (635)
332 PF08553 VID27: VID27 cytoplas 97.7 0.0037 8.1E-08 45.7 13.6 136 6-152 502-645 (794)
333 KOG0882 Cyclophilin-related pe 97.7 0.00035 7.5E-09 46.9 7.6 112 4-118 118-240 (558)
334 KOG1832 HIV-1 Vpr-binding prot 97.7 2.7E-05 5.8E-10 56.4 2.5 127 1-140 1116-1246(1516)
335 PF08450 SGL: SMP-30/Gluconola 97.7 0.0042 9.1E-08 39.2 17.4 134 6-153 20-163 (246)
336 KOG3617 WD40 and TPR repeat-co 97.7 0.00026 5.5E-09 51.3 7.1 113 32-154 15-131 (1416)
337 PF15492 Nbas_N: Neuroblastoma 97.7 0.0047 1E-07 39.3 13.3 70 38-111 3-75 (282)
338 PF07433 DUF1513: Protein of u 97.6 0.0062 1.3E-07 39.5 14.1 120 10-142 30-180 (305)
339 PF07433 DUF1513: Protein of u 97.6 0.0038 8.3E-08 40.5 11.1 103 35-143 7-117 (305)
340 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0031 6.8E-08 34.5 13.3 102 35-150 2-110 (111)
341 PF03178 CPSF_A: CPSF A subuni 97.6 0.0091 2E-07 39.3 13.2 138 4-150 103-261 (321)
342 KOG2079 Vacuolar assembly/sort 97.6 0.0018 3.8E-08 48.2 9.7 103 43-152 98-201 (1206)
343 KOG2114 Vacuolar assembly/sort 97.5 0.01 2.2E-07 43.4 12.5 99 2-107 39-153 (933)
344 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0047 1E-07 33.8 10.6 53 1-61 18-70 (111)
345 PF03178 CPSF_A: CPSF A subuni 97.5 0.012 2.6E-07 38.8 12.2 136 8-153 62-201 (321)
346 PRK11138 outer membrane biogen 97.4 0.02 4.4E-07 38.9 13.9 97 44-153 256-352 (394)
347 KOG2395 Protein involved in va 97.3 0.019 4.2E-07 39.9 11.8 128 4-142 352-489 (644)
348 KOG1920 IkappaB kinase complex 97.3 0.016 3.5E-07 43.9 11.9 134 8-152 222-363 (1265)
349 KOG2444 WD40 repeat protein [G 97.3 0.0017 3.7E-08 40.0 6.0 101 1-110 73-178 (238)
350 PF10313 DUF2415: Uncharacteri 97.2 0.0036 7.9E-08 27.9 5.4 31 33-63 1-34 (43)
351 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0031 6.8E-08 28.9 5.3 27 126-153 14-40 (47)
352 COG0823 TolB Periplasmic compo 97.2 0.027 5.9E-07 38.7 11.8 111 30-150 190-308 (425)
353 PF00780 CNH: CNH domain; Int 97.2 0.026 5.7E-07 36.2 14.5 139 1-153 10-164 (275)
354 PF08553 VID27: VID27 cytoplas 97.1 0.016 3.4E-07 42.7 10.0 100 2-108 546-646 (794)
355 PF10168 Nup88: Nuclear pore c 97.0 0.087 1.9E-06 38.8 13.2 79 33-111 85-181 (717)
356 KOG1832 HIV-1 Vpr-binding prot 96.8 0.0034 7.4E-08 46.2 5.2 112 30-154 1099-1214(1516)
357 PF00930 DPPIV_N: Dipeptidyl p 96.8 0.02 4.2E-07 38.4 8.5 96 41-144 1-120 (353)
358 PF04053 Coatomer_WDAD: Coatom 96.8 0.09 1.9E-06 36.5 14.7 135 8-152 2-171 (443)
359 KOG1916 Nuclear protein, conta 96.7 0.0089 1.9E-07 44.1 6.5 144 8-153 153-322 (1283)
360 PHA02713 hypothetical protein; 96.6 0.038 8.3E-07 39.4 9.2 59 90-153 463-532 (557)
361 PF02897 Peptidase_S9_N: Proly 96.5 0.16 3.4E-06 34.9 13.9 100 35-141 126-243 (414)
362 PF12234 Rav1p_C: RAVE protein 96.4 0.16 3.4E-06 36.8 10.7 97 6-109 49-156 (631)
363 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.025 5.4E-07 37.9 6.4 86 7-98 22-119 (353)
364 PF05096 Glu_cyclase_2: Glutam 96.2 0.16 3.5E-06 32.5 14.4 134 6-148 108-255 (264)
365 KOG4649 PQQ (pyrrolo-quinoline 96.2 0.17 3.8E-06 32.4 12.3 64 2-69 67-130 (354)
366 KOG4460 Nuclear pore complex, 96.2 0.28 6E-06 34.7 12.2 82 33-114 104-203 (741)
367 PF08596 Lgl_C: Lethal giant l 96.0 0.28 6E-06 33.6 12.7 117 34-153 3-172 (395)
368 PRK13616 lipoprotein LpqB; Pro 96.0 0.37 8E-06 34.9 13.8 105 33-150 350-472 (591)
369 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 0.3 6.5E-06 33.7 11.1 90 30-119 305-408 (415)
370 COG3391 Uncharacterized conser 95.9 0.31 6.7E-06 33.2 16.0 136 5-153 93-238 (381)
371 PF11715 Nup160: Nucleoporin N 95.9 0.13 2.9E-06 36.6 8.9 28 90-117 229-256 (547)
372 PF06433 Me-amine-dh_H: Methyl 95.8 0.31 6.8E-06 32.5 12.4 132 8-153 17-164 (342)
373 PF15390 DUF4613: Domain of un 95.8 0.44 9.6E-06 34.2 14.8 124 28-153 52-185 (671)
374 PF12234 Rav1p_C: RAVE protein 95.8 0.49 1.1E-05 34.4 15.2 112 35-152 32-154 (631)
375 COG3391 Uncharacterized conser 95.8 0.37 8.1E-06 32.8 15.0 138 7-152 139-281 (381)
376 COG3386 Gluconolactonase [Carb 95.7 0.33 7.2E-06 32.1 13.9 110 30-145 160-277 (307)
377 PF07569 Hira: TUP1-like enhan 95.7 0.17 3.6E-06 31.7 7.6 65 88-154 19-95 (219)
378 KOG4460 Nuclear pore complex, 95.6 0.54 1.2E-05 33.4 11.4 73 82-154 106-198 (741)
379 PRK13616 lipoprotein LpqB; Pro 95.4 0.67 1.5E-05 33.7 13.1 113 34-152 398-523 (591)
380 PF08728 CRT10: CRT10; InterP 95.4 0.49 1.1E-05 34.9 9.9 106 1-108 117-245 (717)
381 COG3490 Uncharacterized protei 95.3 0.45 9.8E-06 31.0 11.9 105 33-143 68-180 (366)
382 PF05694 SBP56: 56kDa selenium 95.2 0.65 1.4E-05 32.2 12.3 145 4-151 94-274 (461)
383 PHA02713 hypothetical protein; 95.1 0.85 1.8E-05 32.9 11.7 23 43-65 351-378 (557)
384 KOG2395 Protein involved in va 95.0 0.49 1.1E-05 33.5 8.7 97 3-108 399-499 (644)
385 KOG3630 Nuclear pore complex, 94.9 0.1 2.2E-06 39.9 5.7 88 3-96 173-260 (1405)
386 PF10168 Nup88: Nuclear pore c 94.8 1.2 2.6E-05 33.2 14.5 74 81-154 86-179 (717)
387 cd00216 PQQ_DH Dehydrogenases 94.7 1 2.2E-05 32.0 14.0 147 2-153 114-318 (488)
388 PF08596 Lgl_C: Lethal giant l 94.7 0.89 1.9E-05 31.3 15.2 146 1-153 100-289 (395)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 94.5 1.1 2.3E-05 31.1 11.8 88 37-125 6-112 (415)
390 PF14870 PSII_BNR: Photosynthe 94.4 0.89 1.9E-05 30.1 14.9 109 30-145 142-253 (302)
391 PF00780 CNH: CNH domain; Int 94.4 0.84 1.8E-05 29.4 10.7 65 42-114 5-69 (275)
392 PF10313 DUF2415: Uncharacteri 94.3 0.21 4.6E-06 22.4 4.7 27 84-110 5-34 (43)
393 KOG4441 Proteins containing BT 94.1 1.6 3.4E-05 31.7 12.7 101 43-153 380-498 (571)
394 PHA03098 kelch-like protein; P 94.1 1.5 3.2E-05 31.4 11.4 101 43-153 389-510 (534)
395 KOG3630 Nuclear pore complex, 94.1 0.34 7.5E-06 37.4 6.8 117 33-153 101-227 (1405)
396 PF07569 Hira: TUP1-like enhan 94.1 0.88 1.9E-05 28.5 8.2 71 34-109 14-95 (219)
397 KOG2377 Uncharacterized conser 93.9 1.5 3.3E-05 30.7 11.7 122 6-134 41-164 (657)
398 COG3386 Gluconolactonase [Carb 93.9 1.2 2.6E-05 29.5 13.4 121 28-154 61-193 (307)
399 cd00216 PQQ_DH Dehydrogenases 93.6 1.8 4E-05 30.7 14.0 114 2-119 65-193 (488)
400 KOG4499 Ca2+-binding protein R 93.5 1.2 2.7E-05 28.3 12.2 98 33-133 158-263 (310)
401 PRK10115 protease 2; Provision 93.4 2.4 5.3E-05 31.6 12.9 111 34-153 128-254 (686)
402 PF14583 Pectate_lyase22: Olig 93.3 1.2 2.5E-05 30.5 7.7 75 39-118 42-119 (386)
403 PF05694 SBP56: 56kDa selenium 93.2 2 4.4E-05 29.9 10.2 117 35-154 183-342 (461)
404 PF04053 Coatomer_WDAD: Coatom 93.0 2.2 4.8E-05 29.9 14.4 51 5-62 123-173 (443)
405 PF14583 Pectate_lyase22: Olig 93.0 2.1 4.5E-05 29.4 12.5 107 38-151 243-378 (386)
406 PF02897 Peptidase_S9_N: Proly 92.7 2.3 5E-05 29.3 16.2 100 4-111 146-262 (414)
407 COG3490 Uncharacterized protei 92.1 2.3 5.1E-05 28.0 11.9 55 39-98 120-180 (366)
408 KOG4441 Proteins containing BT 92.0 3.6 7.8E-05 30.0 13.6 100 43-153 427-545 (571)
409 PF05096 Glu_cyclase_2: Glutam 92.0 2.2 4.8E-05 27.6 13.0 109 33-153 45-156 (264)
410 PF07250 Glyoxal_oxid_N: Glyox 91.8 2.3 4.9E-05 27.2 9.9 108 39-149 73-194 (243)
411 PF06433 Me-amine-dh_H: Methyl 91.7 2.9 6.2E-05 28.2 12.9 149 2-153 151-319 (342)
412 PF11715 Nup160: Nucleoporin N 91.5 0.77 1.7E-05 32.9 5.6 35 33-67 215-253 (547)
413 PF10214 Rrn6: RNA polymerase 91.0 5.6 0.00012 30.2 12.5 101 33-134 146-257 (765)
414 smart00564 PQQ beta-propeller 90.9 0.62 1.3E-05 19.0 3.4 24 93-116 8-31 (33)
415 PF10647 Gmad1: Lipoprotein Lp 90.7 3.1 6.7E-05 26.8 13.9 108 34-150 25-140 (253)
416 COG3204 Uncharacterized protei 90.6 3.5 7.6E-05 27.2 11.1 116 30-151 83-207 (316)
417 PF07676 PD40: WD40-like Beta 90.3 0.83 1.8E-05 19.6 4.9 30 30-59 6-38 (39)
418 TIGR02276 beta_rpt_yvtn 40-res 90.3 0.87 1.9E-05 19.7 4.7 31 89-119 1-32 (42)
419 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.1 5.6 0.00012 28.7 11.7 31 90-120 471-501 (527)
420 PF06977 SdiA-regulated: SdiA- 89.8 3.8 8.3E-05 26.3 10.9 115 30-151 19-144 (248)
421 PHA02790 Kelch-like protein; P 89.7 5.8 0.00012 28.2 11.9 98 43-153 362-469 (480)
422 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.6 6.2 0.00013 28.5 9.6 112 2-118 73-198 (527)
423 PF04841 Vps16_N: Vps16, N-ter 89.5 5.4 0.00012 27.8 10.7 34 33-66 217-250 (410)
424 PF03088 Str_synth: Strictosid 89.4 0.89 1.9E-05 24.1 3.4 42 4-50 33-74 (89)
425 PF07995 GSDH: Glucose / Sorbo 89.3 4.9 0.00011 27.0 12.5 26 34-60 3-28 (331)
426 KOG1900 Nuclear pore complex, 89.3 10 0.00022 30.5 11.5 138 5-153 96-271 (1311)
427 PF08728 CRT10: CRT10; InterP 89.2 7.8 0.00017 29.1 11.1 115 35-153 103-245 (717)
428 PF14727 PHTB1_N: PTHB1 N-term 89.0 6.1 0.00013 27.7 14.4 55 93-150 302-356 (418)
429 KOG1916 Nuclear protein, conta 88.9 0.41 8.9E-06 36.2 2.5 120 30-153 130-264 (1283)
430 COG4590 ABC-type uncharacteriz 88.8 6.6 0.00014 27.8 8.5 109 2-117 284-394 (733)
431 KOG1897 Damage-specific DNA bi 88.8 9.6 0.00021 29.7 15.2 78 31-108 529-612 (1096)
432 KOG2247 WD40 repeat-containing 88.3 0.024 5.2E-07 39.2 -3.5 106 31-145 73-179 (615)
433 PF15390 DUF4613: Domain of un 88.2 8.3 0.00018 28.2 10.7 104 4-111 78-188 (671)
434 COG5167 VID27 Protein involved 87.4 9 0.00019 27.7 11.3 32 87-118 569-600 (776)
435 PHA03098 kelch-like protein; P 87.3 8.9 0.00019 27.6 13.0 65 43-112 342-417 (534)
436 TIGR03118 PEPCTERM_chp_1 conse 86.9 7.2 0.00016 26.1 13.4 151 2-153 104-278 (336)
437 COG5167 VID27 Protein involved 86.0 11 0.00024 27.3 8.5 60 44-109 573-632 (776)
438 PF14779 BBS1: Ciliary BBSome 85.4 7.8 0.00017 25.1 7.0 59 92-151 196-255 (257)
439 PF01011 PQQ: PQQ enzyme repea 85.3 2.1 4.5E-05 18.3 4.0 26 94-119 3-28 (38)
440 PF12768 Rax2: Cortical protei 85.2 8.5 0.00019 25.3 12.7 100 8-112 16-126 (281)
441 KOG1898 Splicing factor 3b, su 84.9 18 0.00038 28.7 10.7 31 87-118 941-971 (1205)
442 PF14761 HPS3_N: Hermansky-Pud 84.5 4.5 9.7E-05 25.4 4.9 44 5-51 35-78 (215)
443 PF01436 NHL: NHL repeat; Int 84.5 1.9 4E-05 17.1 4.3 25 35-59 4-28 (28)
444 PF13570 PQQ_3: PQQ-like domai 84.4 2.4 5.1E-05 18.3 3.1 21 90-110 20-40 (40)
445 KOG3616 Selective LIM binding 84.2 5.4 0.00012 30.2 5.9 38 30-67 12-49 (1636)
446 PF14781 BBS2_N: Ciliary BBSom 84.0 6.2 0.00014 22.8 11.2 109 1-114 13-130 (136)
447 PF14761 HPS3_N: Hermansky-Pud 83.2 9.1 0.0002 24.1 14.0 58 45-106 29-92 (215)
448 COG5276 Uncharacterized conser 82.8 12 0.00025 25.1 13.7 112 30-153 84-198 (370)
449 PF08801 Nucleoporin_N: Nup133 82.7 14 0.0003 25.8 9.7 27 127-154 193-219 (422)
450 PF12657 TFIIIC_delta: Transcr 82.4 8.4 0.00018 23.2 9.5 29 125-153 87-120 (173)
451 PF06977 SdiA-regulated: SdiA- 82.1 11 0.00024 24.3 14.8 119 33-153 65-200 (248)
452 PF04841 Vps16_N: Vps16, N-ter 80.8 17 0.00036 25.5 13.4 51 82-133 219-269 (410)
453 COG3204 Uncharacterized protei 80.5 14 0.00031 24.6 7.2 69 83-153 89-157 (316)
454 KOG2377 Uncharacterized conser 80.2 19 0.00041 25.8 9.1 94 37-133 27-122 (657)
455 KOG2109 WD40 repeat protein [G 79.7 3.7 8E-05 30.2 3.8 48 10-61 297-345 (788)
456 KOG3611 Semaphorins [Signal tr 78.9 9.7 0.00021 28.9 5.7 57 2-58 429-489 (737)
457 PF14870 PSII_BNR: Photosynthe 78.0 18 0.00039 24.2 15.9 116 30-151 184-301 (302)
458 TIGR02604 Piru_Ver_Nterm putat 77.7 20 0.00043 24.6 13.9 108 32-145 71-204 (367)
459 KOG2247 WD40 repeat-containing 77.4 1 2.3E-05 31.7 0.7 80 4-94 93-174 (615)
460 PHA02790 Kelch-like protein; P 75.1 28 0.0006 25.0 12.0 64 43-111 318-386 (480)
461 PF11635 Med16: Mediator compl 74.0 27 0.00059 26.8 7.0 73 32-104 259-345 (753)
462 TIGR03118 PEPCTERM_chp_1 conse 73.0 26 0.00056 23.6 12.8 119 35-153 25-169 (336)
463 PLN02153 epithiospecifier prot 72.5 27 0.00058 23.6 11.6 23 43-65 85-112 (341)
464 TIGR02171 Fb_sc_TIGR02171 Fibr 72.2 21 0.00045 27.8 6.0 52 9-65 330-388 (912)
465 PF14781 BBS2_N: Ciliary BBSom 72.1 17 0.00036 21.1 12.0 74 37-115 3-87 (136)
466 PF01731 Arylesterase: Arylest 71.1 13 0.00029 19.6 6.1 30 33-62 54-84 (86)
467 PF14269 Arylsulfotran_2: Aryl 70.9 28 0.00061 23.2 7.7 66 84-152 148-218 (299)
468 TIGR02604 Piru_Ver_Nterm putat 70.9 31 0.00067 23.7 12.1 18 33-50 14-31 (367)
469 PF12657 TFIIIC_delta: Transcr 70.4 14 0.00029 22.3 4.2 30 34-63 87-122 (173)
470 KOG1897 Damage-specific DNA bi 69.8 54 0.0012 26.0 13.3 98 3-107 843-940 (1096)
471 KOG4499 Ca2+-binding protein R 68.6 29 0.00064 22.5 8.6 48 37-89 216-263 (310)
472 KOG1898 Splicing factor 3b, su 66.3 68 0.0015 25.8 9.1 97 4-109 950-1048(1205)
473 TIGR03606 non_repeat_PQQ dehyd 66.3 46 0.00099 23.9 14.4 35 30-64 27-61 (454)
474 COG3823 Glutamine cyclotransfe 65.3 33 0.00071 21.9 9.6 100 42-144 138-249 (262)
475 PF08309 LVIVD: LVIVD repeat; 63.7 13 0.00028 16.6 5.5 35 35-71 4-38 (42)
476 TIGR02171 Fb_sc_TIGR02171 Fibr 63.6 72 0.0016 25.2 9.7 52 54-111 329-387 (912)
477 TIGR03074 PQQ_membr_DH membran 62.2 72 0.0016 24.7 14.9 53 101-153 414-476 (764)
478 PF14779 BBS1: Ciliary BBSome 62.0 42 0.00091 22.0 8.4 74 31-106 175-255 (257)
479 COG5276 Uncharacterized conser 61.6 47 0.001 22.4 16.3 101 5-113 103-203 (370)
480 PF08801 Nucleoporin_N: Nup133 59.9 21 0.00045 25.0 4.0 30 34-63 191-220 (422)
481 TIGR03548 mutarot_permut cycli 59.4 51 0.0011 22.1 11.3 24 42-65 170-197 (323)
482 PRK13684 Ycf48-like protein; P 59.3 53 0.0012 22.3 12.3 110 32-149 172-283 (334)
483 TIGR02608 delta_60_rpt delta-6 59.3 19 0.00041 17.2 3.2 19 34-52 2-20 (55)
484 PF13449 Phytase-like: Esteras 58.6 54 0.0012 22.1 12.1 109 32-142 19-164 (326)
485 COG4247 Phy 3-phytase (myo-ino 58.4 51 0.0011 21.8 6.1 32 86-118 62-93 (364)
486 PF10584 Proteasome_A_N: Prote 57.6 2.2 4.8E-05 16.3 -0.5 7 40-46 8-14 (23)
487 COG4590 ABC-type uncharacteriz 57.1 72 0.0016 23.1 8.7 102 43-153 279-385 (733)
488 PF06739 SBBP: Beta-propeller 56.3 17 0.00037 15.6 3.3 22 33-54 13-34 (38)
489 PF12341 DUF3639: Protein of u 56.2 14 0.00031 14.7 3.0 18 90-107 10-27 (27)
490 PLN02193 nitrile-specifier pro 54.6 78 0.0017 22.7 13.2 23 90-112 328-354 (470)
491 KOG3616 Selective LIM binding 54.3 21 0.00045 27.4 3.3 81 28-117 333-413 (1636)
492 KOG0379 Kelch repeat-containin 53.9 82 0.0018 22.8 10.9 97 44-145 123-234 (482)
493 COG5290 IkappaB kinase complex 53.6 45 0.00098 26.0 4.8 108 38-151 252-364 (1243)
494 KOG3522 Predicted guanine nucl 52.1 1.1E+02 0.0023 24.1 6.5 60 2-63 639-698 (925)
495 PF10395 Utp8: Utp8 family; I 50.2 1.1E+02 0.0025 23.3 13.8 61 90-153 242-304 (670)
496 KOG1900 Nuclear pore complex, 49.3 1.5E+02 0.0033 24.6 7.4 19 51-69 96-114 (1311)
497 PLN02193 nitrile-specifier pro 48.4 1E+02 0.0022 22.2 10.7 67 43-112 228-305 (470)
498 PF07995 GSDH: Glucose / Sorbo 48.1 85 0.0019 21.3 8.7 75 28-104 248-330 (331)
499 KOG2714 SETA binding protein S 48.1 62 0.0014 23.0 4.6 68 44-112 235-309 (465)
500 KOG1896 mRNA cleavage and poly 48.0 1.6E+02 0.0035 24.4 11.5 136 8-151 1065-1210(1366)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=177.51 Aligned_cols=141 Identities=24% Similarity=0.309 Sum_probs=124.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (154)
++||+.||++++|++.+... ...+.+|...|..++|+|+|++|.+++.|.+-++||+++....... +|..
T Consensus 234 lat~s~Dgtvklw~~~~e~~----l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~----- 304 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETP----LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSK----- 304 (459)
T ss_pred eeeeccCCceeeeccCCCcc----hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccc-----
Confidence 58999999999999988664 6666799999999999999999999999999999999998765432 2332
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.++.++|.+||.++++|+.|..-||||++++.++..+.+|...+ ..+.|+| +|..|++|+.|++++|||+.
T Consensus 305 -~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I--~~V~fsP-NGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 305 -GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEI--LSVAFSP-NGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred -ccceeEecCCCceeeccCccchhheeecccCcEEEEecccccce--eeEeECC-CceEEeecCCCCcEEEeeec
Confidence 45678999999999999999999999999999999999876555 5899999 89999999999999999983
No 2
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=3.3e-30 Score=155.33 Aligned_cols=142 Identities=20% Similarity=0.321 Sum_probs=121.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++++.|+++++||+.+++. ..++.+|...|.+++|+|+.+++++|+.|.++++|+............. +..++.
T Consensus 79 lS~swD~~lrlWDl~~g~~----t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~--~~~WVs 152 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGES----TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDS--HREWVS 152 (315)
T ss_pred EeccccceEEEEEecCCcE----EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCC--CcCcEE
Confidence 6899999999999999865 6677799999999999999999999999999999998766544433322 134555
Q ss_pred EEEEEEcCC--CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 82 SFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+++|+|+ ..++++++.|++|++||+++.+....+.+|.... ..+.++| ++.+.++|+.||.+.+||+.
T Consensus 153 --cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v--~t~~vSp-DGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 153 --CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV--NTVTVSP-DGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred --EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE--EEEEECC-CCCEEecCCCCceEEEEEcc
Confidence 5689997 6899999999999999999999998888766554 5789999 99999999999999999984
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=164.89 Aligned_cols=141 Identities=21% Similarity=0.261 Sum_probs=126.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|+|++.|.+-++||++++.. .....||...|.+++|.|+|.++++|+.|..-+|||++++.+...+. |..
T Consensus 276 L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k----- 346 (459)
T KOG0272|consen 276 LGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK----- 346 (459)
T ss_pred eeecccccchhhcccccchh----hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc-----
Confidence 57999999999999999875 66666999999999999999999999999999999999999887664 433
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.+.|+|+|..++||+.|++++|||++..+.+.++.+|..-+ ..+.+.|..+.+|+++++|+++++|.-
T Consensus 347 -~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlV--S~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 347 -EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLV--SQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred -ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchh--hheEecccCCeEEEEcccCcceeeecC
Confidence 46788999999999999999999999999999999999876555 578999878899999999999999964
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=5e-30 Score=171.79 Aligned_cols=141 Identities=20% Similarity=0.285 Sum_probs=123.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (154)
|++||+|++||+|.+.+... .....+|..||.+++|+|.|-+|++++.|++.++|.........++ +|....
T Consensus 466 LlScSED~svRLWsl~t~s~----~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV--- 538 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWSC----LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDV--- 538 (707)
T ss_pred eeeccCCcceeeeeccccee----EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccccc---
Confidence 68999999999999998874 4455599999999999999999999999999999999887666554 344432
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
. ++.|+|+..|+++|+.|.++|+||+.+|..++.+.+|...+ .+++++| ++.+|++|+.||.|++||+.
T Consensus 539 -~--cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V--~al~~Sp-~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 539 -D--CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV--TALAFSP-CGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred -c--eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCce--EEEEEcC-CCceEeecccCCcEEEEEcC
Confidence 2 46899999999999999999999999999999999987766 5789999 99999999999999999973
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=4.4e-30 Score=172.04 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=122.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+||||.|++.++|......+ ...+.+|-+.|.|++|+|+++++++||.|.+|++||+.++....++. |..
T Consensus 508 Fatas~D~tArLWs~d~~~P----lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~----- 578 (707)
T KOG0263|consen 508 FATASHDQTARLWSTDHNKP----LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG----- 578 (707)
T ss_pred EEecCCCceeeeeecccCCc----hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-----
Confidence 58999999999999988663 34444999999999999999999999999999999999998877663 322
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|+|+|++|++|+.|+.|.+||+.+++.+..+.+|. . ...++.|+. ++..|++|+.|++|++||+
T Consensus 579 -~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht-~-ti~SlsFS~-dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 579 -PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHT-G-TIYSLSFSR-DGNVLASGGADNSVRLWDL 648 (707)
T ss_pred -ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhccc-C-ceeEEEEec-CCCEEEecCCCCeEEEEEc
Confidence 34567899999999999999999999999999999999883 3 337889998 8899999999999999997
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-29 Score=159.26 Aligned_cols=141 Identities=21% Similarity=0.292 Sum_probs=117.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|.++|+||+.+..+ .....+|...|.|++|+|||..|++|+.||+|++||..++++..... ..+..++
T Consensus 130 l~tGsGD~TvR~WD~~TeTp----~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l--~gH~K~I 203 (480)
T KOG0271|consen 130 LVTGSGDTTVRLWDLDTETP----LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRAL--RGHKKWI 203 (480)
T ss_pred EEecCCCceEEeeccCCCCc----ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccc--cCcccce
Confidence 68999999999999998774 44555999999999999999999999999999999999887653211 1222334
Q ss_pred eEEEEEEcC-----CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGW-----DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~-----~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .++|.| ..++|++++.||.++|||+..+.++..+.+|...+. ++.|-. ..++.+|+.|++|++|+.
T Consensus 204 t--~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT--CvrwGG--~gliySgS~DrtIkvw~a 275 (480)
T KOG0271|consen 204 T--ALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT--CVRWGG--EGLIYSGSQDRTIKVWRA 275 (480)
T ss_pred e--EEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE--EEEEcC--CceEEecCCCceEEEEEc
Confidence 4 456654 577999999999999999999999999999887774 678875 479999999999999985
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=4.5e-28 Score=144.46 Aligned_cols=146 Identities=19% Similarity=0.234 Sum_probs=114.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------- 70 (154)
++||++||+++|||++... ..+.+.|.++|+++..+|+...|+++..+|.|++||+.........
T Consensus 98 MyTgseDgt~kIWdlR~~~-----~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 98 MYTGSEDGTVKIWDLRSLS-----CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQS 172 (311)
T ss_pred EEecCCCceEEEEeccCcc-----cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceee
Confidence 4789999999999999854 6667789999999999999999999999999999999854211000
Q ss_pred -e------------------------ec---------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc-ccee
Q 038702 71 -H------------------------HN---------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVA 115 (154)
Q Consensus 71 -~------------------------~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~ 115 (154)
. +. .-..+.-..+++.++|++++|++++.|.+++||+..+. +...
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence 0 00 00001123456789999999999999999999999987 5566
Q ss_pred EEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 116 TLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+.+|.... +..+|+. +++||++|+.|+.+++||+.
T Consensus 253 ~l~gh~rWv--Wdc~FS~-dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 253 VLTGHQRWV--WDCAFSA-DGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EeecCCceE--Eeeeecc-CccEEEecCCCCceeecccc
Confidence 677766554 6778888 89999999999999999973
No 8
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.2e-27 Score=158.95 Aligned_cols=144 Identities=22% Similarity=0.265 Sum_probs=118.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++|+.|+++++||+..... ....+.+|...|++++|+|+++++++|+.|++|++||+++++....+. |..
T Consensus 218 l~s~s~D~tiriwd~~~~~~---~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~----- 289 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGR---NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD----- 289 (456)
T ss_pred EEEecCCceEEEeeccCCCe---EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-----
Confidence 57899999999999944432 033444999999999999999999999999999999999976665543 332
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc--ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+..++|++++++|++++.|+.|++||+.++. +...+.++........++|+| ++.+++++..|+.+++||++
T Consensus 290 -~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 290 -GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred -ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEcc
Confidence 23356899999999999999999999999998 566776655441336789999 88999999999999999974
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-28 Score=153.11 Aligned_cols=140 Identities=20% Similarity=0.350 Sum_probs=124.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|++|++|.++.+|+....+. ...+..+|...|..+.|||+++++++++.|.+|++|+.++++....+. |..
T Consensus 339 lVSgsDd~tlflW~p~~~kk---pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~----- 410 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKK---PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA----- 410 (480)
T ss_pred eEEecCCceEEEeccccccc---chhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-----
Confidence 58999999999999876553 134556999999999999999999999999999999999998876664 544
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.++.++|+.|.++|++|+.|.++++|++++.+....+.+|...+. ++.|+| +++.+++|+.|..+++|.
T Consensus 411 -~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf--~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 411 -AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF--AVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE--EEEecC-CCceeecCCCceEEEeec
Confidence 567899999999999999999999999999999999998887774 789999 899999999999999995
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=3.6e-28 Score=153.15 Aligned_cols=141 Identities=21% Similarity=0.338 Sum_probs=125.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++||+||+|+|||....+. ...+.+|.-.|.+++|+|.-.++++++.|..|++||.+++++...+. |.+
T Consensus 195 F~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn----- 265 (464)
T KOG0284|consen 195 FLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN----- 265 (464)
T ss_pred eEEecCCCeEEEEeccCCch----hheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc-----
Confidence 58999999999999987664 45557999999999999999999999999999999999998876543 333
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.+.|++++++|++++.|..++++|+++.+.++++++|...+ .++.|+|-...+|.+|+.||.|..|.+
T Consensus 266 -tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv--~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 266 -TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDV--TSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred -eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhh--eeeccccccccceeeccCCCceEEEec
Confidence 56788999999999999999999999999999999999887776 478999999999999999999999976
No 11
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.9e-26 Score=153.79 Aligned_cols=147 Identities=17% Similarity=0.274 Sum_probs=112.4
Q ss_pred CeeecCCCcEEEEEccCCCCC--CCC-CceeecccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATD--KPE-PTKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~--~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
|++|+.|++|++||+...... ... ...+.+|...|.+++|+|++ +.|++++.|++|++||+++.+....+. .+
T Consensus 91 LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~---~h 167 (493)
T PTZ00421 91 LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK---CH 167 (493)
T ss_pred EEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc---CC
Confidence 589999999999999764321 011 23445899999999999975 699999999999999999876554432 11
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc----CCCeEEEee
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT----GGGQVYVWT 152 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~d~~i~~wd 152 (154)
.. .+..++|+|++.+|++++.|+.|++||+++++.+..+.+|..... ..+.|.+ +...+++++ .|+.|++||
T Consensus 168 ~~--~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~-~~~~w~~-~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 168 SD--QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS-QRCLWAK-RKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CC--ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc-eEEEEcC-CCCeEEEEecCCCCCCeEEEEe
Confidence 12 244678999999999999999999999999998888887654433 4567888 445555443 589999999
Q ss_pred CC
Q 038702 153 SD 154 (154)
Q Consensus 153 ~~ 154 (154)
+.
T Consensus 244 lr 245 (493)
T PTZ00421 244 TR 245 (493)
T ss_pred CC
Confidence 73
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=3.6e-27 Score=146.95 Aligned_cols=140 Identities=19% Similarity=0.192 Sum_probs=120.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (154)
|++|+.|++++|||+.+++. ...+.+|...|..+++|+.--++++++.|+.|+.||++..+....+ +|..
T Consensus 166 f~tgs~DrtikIwDlatg~L----kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS----- 236 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATGQL----KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS----- 236 (460)
T ss_pred EEecCCCceeEEEEcccCeE----EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc-----
Confidence 58999999999999999875 5556699999999999999999999999999999999988776543 2332
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++++..+|.-..|++|+.|.++|+||+++...+..+.+|...+ .++.+.|.+ ..+++|+.|++|++||+
T Consensus 237 -~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V--~~V~~~~~d-pqvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 237 -GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV--ASVMCQPTD-PQVITGSHDSTVRLWDL 306 (460)
T ss_pred -eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc--eeEEeecCC-CceEEecCCceEEEeee
Confidence 45567889999999999999999999999999999999988776 467777744 56899999999999997
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=140.74 Aligned_cols=142 Identities=20% Similarity=0.253 Sum_probs=125.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.|+..++||++.+.. ...+.+|.+.|.+++|.|+|.-|++|+.|+++++||++..+....+.+.....
T Consensus 202 FvSg~cD~~aklWD~R~~~c----~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~--- 274 (343)
T KOG0286|consen 202 FVSGGCDKSAKLWDVRSGQC----VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC--- 274 (343)
T ss_pred EEecccccceeeeeccCcce----eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC---
Confidence 57999999999999999874 55556999999999999999999999999999999999998888877554322
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.+.+++|+..|++|++|..|.++.+||.-.++.+..+.+|.+.+ .++..+| ++.-+++|+.|..+++|.
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv--Scl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRV--SCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCee--EEEEECC-CCcEEEecchhHheeecC
Confidence 23467899999999999999999999999999999999887666 4678888 889999999999999994
No 14
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.6e-25 Score=151.46 Aligned_cols=147 Identities=12% Similarity=0.192 Sum_probs=111.3
Q ss_pred CeeecCCCcEEEEEccCCCCCC---CC-CceeecccCCeEEEEEcCCCCE-EEEeeCCCeEEEEeccccccceeEeecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDK---PE-PTKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIWSGVNFENTAMIHHNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~---~~-~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~ 75 (154)
|++|+.|++|++||+....... .. ...+.+|...|.+++|+|++.. +++++.|++|++||+++.+....+.+..
T Consensus 90 LASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~- 168 (568)
T PTZ00420 90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPK- 168 (568)
T ss_pred EEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCC-
Confidence 5899999999999997643210 00 1234589999999999998875 5789999999999999877554443321
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceE---EEecCCCccEEEEEcCC----CeE
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCR---FHAHPHQVGTLAGATGG----GQV 148 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~d----~~i 148 (154)
.+.+++|+|+|.+|++++.|+.|++||+++++.+.++.+|........ ..+++ ++.+|++++.| +.|
T Consensus 169 -----~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~V 242 (568)
T PTZ00420 169 -----KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREM 242 (568)
T ss_pred -----cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEE
Confidence 245778999999999999999999999999999998988765432111 22446 66788887766 479
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
++||++
T Consensus 243 kLWDlr 248 (568)
T PTZ00420 243 KLWDLK 248 (568)
T ss_pred EEEECC
Confidence 999974
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.4e-26 Score=152.74 Aligned_cols=143 Identities=24% Similarity=0.350 Sum_probs=118.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccc-ccceeE-eecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF-ENTAMI-HHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~-~~~~~~~~ 78 (154)
+++++.|+.+++|+...... .......+|...|.+++|+|+++++++++.|+++++||++.. .....+ .|..
T Consensus 174 l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~---- 247 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST---- 247 (456)
T ss_pred EEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC----
Confidence 46788999999999965541 013333689999999999999999999999999999999443 333333 3333
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+++++|+|+++++++|+.|++|+|||+++++++..+.+|...+ ..++|++ ++++|++++.|+.|++||+.
T Consensus 248 --~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i--s~~~f~~-d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 248 --YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI--SGLAFSP-DGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred --ceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce--EEEEECC-CCCEEEEcCCCccEEEEECC
Confidence 34678999999999999999999999999999999999887765 4678888 88999999999999999973
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=136.99 Aligned_cols=142 Identities=16% Similarity=0.185 Sum_probs=121.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~ 78 (154)
|+|+|.|.+.-+||+++++. ...+.+|.+.|.+++++| +++.|++|+.|+..++||++.+.....+. |..
T Consensus 159 ilT~SGD~TCalWDie~g~~----~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes---- 230 (343)
T KOG0286|consen 159 ILTGSGDMTCALWDIETGQQ----TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES---- 230 (343)
T ss_pred eEecCCCceEEEEEcccceE----EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc----
Confidence 58999999999999999885 556669999999999999 99999999999999999999987765553 322
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
-+. .++|.|+|.-+++|+.|++.|+||++..+.+..+.......-..+++|+. .+++|..|..|.++.+||.
T Consensus 231 DIN--sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 231 DIN--SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred ccc--eEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeec
Confidence 223 56899999999999999999999999999988887554444457889998 7899999999999999994
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.94 E-value=2.2e-25 Score=134.74 Aligned_cols=147 Identities=18% Similarity=0.263 Sum_probs=116.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCC-CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPE-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~ 78 (154)
+++++.|.++.+|++.....+.-. ...+.+|.-.|..+..+++|++.++++.|+++++||+.+++....+ .|..
T Consensus 31 l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~---- 106 (315)
T KOG0279|consen 31 LVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK---- 106 (315)
T ss_pred EEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC----
Confidence 467899999999999765332211 3344599999999999999999999999999999999998655443 3443
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCC-ccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQ-VGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~~wd~~ 154 (154)
-+++++++++.+.+++|+.|++|++|+.... +..++..........+++|+|.. ..+|++++.|++|++||++
T Consensus 107 --dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~ 180 (315)
T KOG0279|consen 107 --DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR 180 (315)
T ss_pred --ceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence 3568899999999999999999999998754 34444434324444789999953 5689999999999999984
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.94 E-value=5.9e-27 Score=147.74 Aligned_cols=140 Identities=20% Similarity=0.232 Sum_probs=118.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~ 78 (154)
+++|+.+|.|++|+...+. ...+. .|...|++++|+|+...|++++.||+|+|||....+....+ +|.-
T Consensus 153 miSgD~gG~iKyWqpnmnn-----Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw---- 223 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMNN-----VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW---- 223 (464)
T ss_pred EEEcCCCceEEecccchhh-----hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCC----
Confidence 4789999999999987655 33344 45589999999999999999999999999999887665444 2322
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+. ++.|+|...++++++.|+.|++||.++++++.++.+|...+ ..+.|+| ++++|++++.|..++++|+.
T Consensus 224 dVk--svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntV--l~~~f~~-n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 224 DVK--SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTV--LAVKFNP-NGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred Ccc--eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceE--EEEEEcC-CCCeeEEccCCceEEEEehh
Confidence 223 57899999999999999999999999999999998776655 5789999 77999999999999999973
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=7.8e-26 Score=152.03 Aligned_cols=142 Identities=18% Similarity=0.223 Sum_probs=121.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++||++||.|+|||...+.+ ...+..|++.|+.++|+..++.+++++-||+|+.||+...+.-..+..+. .+
T Consensus 365 iaTG~eDgKVKvWn~~SgfC----~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~----p~ 436 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGFC----FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE----PI 436 (893)
T ss_pred EEeccCCCcEEEEeccCceE----EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC----ce
Confidence 58999999999999998874 55555999999999999999999999999999999998776655544332 23
Q ss_pred eEEEEEEcCCCcEEEEEccCC-eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTR-TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+..+++..|.|..+.+|+.|. .|.+|++.+|+.+-.+.+|..++. .++|+| .++.|++++.|.+|++||+
T Consensus 437 QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs--~l~f~~-~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 437 QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVS--GLSFSP-DGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcce--eeEEcc-ccCeEEeccccceEEEEEe
Confidence 444667889999999999887 599999999999999999887774 678888 7789999999999999996
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.7e-25 Score=132.21 Aligned_cols=142 Identities=26% Similarity=0.345 Sum_probs=112.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc--eeE-eecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--AMI-HHNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~--~~~-~~~~~ 75 (154)
|++|+.|+.|++|+...... ..+.... +|+..|++++|+|.|++|++++.|.++.||.-...+-. ..+ +|.+
T Consensus 30 lAscg~Dk~vriw~~~~~~s--~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn- 106 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDS--WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN- 106 (312)
T ss_pred EEeecCCceEEEEecCCCCc--EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc-
Confidence 58999999999999985221 1122222 79999999999999999999999999999987654332 222 2333
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc---cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR---RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.+. +++|+++|.+||+++.|+.|-||.+... +++..+..|.+.+. .+.||| ...+|+++++|.+|++|+
T Consensus 107 ---EVK--~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK--~V~WHP-t~dlL~S~SYDnTIk~~~ 178 (312)
T KOG0645|consen 107 ---EVK--CVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK--HVIWHP-TEDLLFSCSYDNTIKVYR 178 (312)
T ss_pred ---cee--EEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc--EEEEcC-CcceeEEeccCCeEEEEe
Confidence 233 6789999999999999999999998743 56777887777664 689999 778999999999999996
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
-
T Consensus 179 ~ 179 (312)
T KOG0645|consen 179 D 179 (312)
T ss_pred e
Confidence 3
No 21
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.8e-25 Score=133.73 Aligned_cols=144 Identities=16% Similarity=0.156 Sum_probs=114.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++++.||++++||+..... ....+..|+..|.++.|++ +++.+++++.|++|++|+...+.....+.- + .
T Consensus 76 ~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g---h--~ 147 (311)
T KOG0277|consen 76 VIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG---H--N 147 (311)
T ss_pred EEEEecCceEEEeccCCCCc---chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC---C--c
Confidence 47899999999999654433 1334448999999999999 667888999999999999987766654321 2 2
Q ss_pred EeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
-.++.++|+|. +..+++++.|+.+++||++.......+..|.... .++.|+..+.+++++|+.|+.|+.||+.
T Consensus 148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Ei--l~cdw~ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEI--LCCDWSKYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecccee--EeecccccCCcEEEecCCCceEEEEehh
Confidence 25668899995 6799999999999999999655445577776444 4678888888999999999999999973
No 22
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=7.8e-26 Score=151.36 Aligned_cols=139 Identities=24% Similarity=0.357 Sum_probs=123.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
++|||.|++.++|+++.... ...+.+|+..|.|+.|+|..+.++++|.|++|+||.+.+..+...+. |..
T Consensus 478 iAT~SqDktaKiW~le~~~l----~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~----- 548 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLRL----LGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS----- 548 (775)
T ss_pred EEecccccceeeecccCceE----EEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-----
Confidence 58999999999999996552 34445999999999999999999999999999999999999887664 433
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.++++.|-.++..|++++.||.+++|++.+.+++.++..|...+ ++++.+| ...++++|+.||.|.+|.
T Consensus 549 -aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv--WaL~~~~-~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 549 -AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV--WALSVSP-LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred -eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee--EEEeecC-ccceeEecCCCeEEEEee
Confidence 57788999999999999999999999999999999999887666 5788888 677999999999999994
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=3.7e-25 Score=141.83 Aligned_cols=141 Identities=23% Similarity=0.312 Sum_probs=117.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (154)
+++++.|+.|+|+.+....+ ...+.+|.++|.++.|+|.+.+|++++.|+++++|..........+ .|..
T Consensus 332 F~ts~td~~i~V~kv~~~~P----~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk----- 402 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRP----VKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK----- 402 (524)
T ss_pred EeecCCCceEEEEEecCCCc----ceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc-----
Confidence 57899999999999987664 5556699999999999999999999999999999997665443222 2222
Q ss_pred EeEEEEEEcCC---------CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 80 ISSFRAIWGWD---------DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 80 ~~~~~~~~~~~---------~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
..+.+.|+|+ +..+++++.|++|++||+..+.++.++..|..++ .+++|+| ++.++++|+.||.|.+
T Consensus 403 -ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pV--ysvafS~-~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 403 -EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPV--YSVAFSP-NGRYLASGSLDGCVHI 478 (524)
T ss_pred -ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCce--EEEEecC-CCcEEEecCCCCeeEe
Confidence 2345567774 4479999999999999999999999998777766 4889999 8999999999999999
Q ss_pred eeCC
Q 038702 151 WTSD 154 (154)
Q Consensus 151 wd~~ 154 (154)
|+.+
T Consensus 479 ws~~ 482 (524)
T KOG0273|consen 479 WSTK 482 (524)
T ss_pred cccc
Confidence 9864
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.3e-25 Score=150.27 Aligned_cols=144 Identities=19% Similarity=0.279 Sum_probs=119.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee------ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV------LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~ 73 (154)
|+++|.|+++++|+++..+.... +..+ ..|...|++++++|+..++++||.|.+.++|+++..+....+ +|.
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~ 505 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT 505 (775)
T ss_pred EEEecCCceEEEecCCCcccccc-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc
Confidence 58999999999999987333222 2222 269999999999999999999999999999999955544433 233
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. ..+++.|+|..+.++|++.|++|+||.+.+..+++++.+|...+. ...|-. ++..|++++.||.|++|++
T Consensus 506 R------Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl--ra~F~~-~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 506 R------GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL--RASFIR-NGKQLISAGADGLIKLWNI 576 (775)
T ss_pred c------ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE--eeeeee-CCcEEEeccCCCcEEEEec
Confidence 3 356789999999999999999999999999999999999887775 566666 6789999999999999997
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
.
T Consensus 577 k 577 (775)
T KOG0319|consen 577 K 577 (775)
T ss_pred c
Confidence 3
No 25
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=134.33 Aligned_cols=142 Identities=22% Similarity=0.292 Sum_probs=115.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
++++|.|++|++|+....+. ...+.+|...|...+|+| .++.|++++.|+++++||++.......+....
T Consensus 120 ~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~----- 190 (311)
T KOG0277|consen 120 FLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN----- 190 (311)
T ss_pred EEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-----
Confidence 46789999999999877663 445559999999999999 68899999999999999999876554443222
Q ss_pred EeEEEEEEcC-CCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGW-DDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
...+++.|+. +...++||+.|+.||.||++.. .++..+.+|.-.+ ..+.++|....+|+++++|-++++||.
T Consensus 191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AV--Rkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAV--RKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEE--EEEecCcchhhHhhhccccceEEeccc
Confidence 1356778886 5678999999999999999964 5677887665443 578999988899999999999999996
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.4e-25 Score=138.09 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=117.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++++.|.+|+.|++.++-. ...+.+|...|..++.+.||..+++++.|.++++|-+.+.+....+. |.. .
T Consensus 208 ilS~srD~tik~We~~tg~c----v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh----~ 279 (406)
T KOG0295|consen 208 ILSCSRDNTIKAWECDTGYC----VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEH----P 279 (406)
T ss_pred eeecccccceeEEeccccee----EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcccc----c
Confidence 57899999999999999874 44555999999999999999999999999999999999886654432 211 1
Q ss_pred EeEEEEEEcC---------------CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 80 ISSFRAIWGW---------------DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 80 ~~~~~~~~~~---------------~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
+. +++|.| .++++.+++.|++|++||+.++.++.++.+|.+.+ ..++|+| .|++|+++..
T Consensus 280 vE--ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV--r~~af~p-~Gkyi~ScaD 354 (406)
T KOG0295|consen 280 VE--CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV--RGVAFSP-GGKYILSCAD 354 (406)
T ss_pred eE--EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccccee--eeeEEcC-CCeEEEEEec
Confidence 22 122222 23699999999999999999999999999998777 4789999 8999999999
Q ss_pred CCeEEEeeCC
Q 038702 145 GGQVYVWTSD 154 (154)
Q Consensus 145 d~~i~~wd~~ 154 (154)
|+++++||++
T Consensus 355 Dktlrvwdl~ 364 (406)
T KOG0295|consen 355 DKTLRVWDLK 364 (406)
T ss_pred CCcEEEEEec
Confidence 9999999974
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2.6e-26 Score=147.26 Aligned_cols=141 Identities=13% Similarity=0.274 Sum_probs=119.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+.|+.|+||++..... +.+.+ +|..+|.+++|+++|..|.+++.|+.+++||.+++++...+....
T Consensus 230 lLS~gmD~~vklW~vy~~~~----~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~----- 300 (503)
T KOG0282|consen 230 LLSGGMDGLVKLWNVYDDRR----CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK----- 300 (503)
T ss_pred EEecCCCceEEEEEEecCcc----eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC-----
Confidence 57899999999999987443 45444 999999999999999999999999999999999998887665433
Q ss_pred EeEEEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...++.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-... ..+.|-+ .+..+++.+.|+++++|+.+
T Consensus 301 -~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i--~~i~F~~-~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 301 -VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI--LDITFVD-EGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred -CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe--eeeEEcc-CCceEeeeccCccEEEEEcC
Confidence 23367899998 789999999999999999999988887554444 5788888 78999999999999999853
No 28
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=8.5e-25 Score=139.17 Aligned_cols=149 Identities=16% Similarity=0.276 Sum_probs=114.4
Q ss_pred CeeecCCCcEEEEEccCCCCC--CCCCcee-ecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATD--KPEPTKV-LSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~--~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
|++|+.|++|.+||+...... ...+... .+|.+.|..++|++ +..+|++++.|+.+.|||.++. ..........+
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah 271 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAH 271 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCccccccc
Confidence 578999999999999865442 1222333 39999999999999 6678999999999999999973 11111111122
Q ss_pred CceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 77 GRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 77 ~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
... ..+++|+|- +..||+|+.|++|++||+|.. +++.++.+|...+ ..+.|+|.....|++++.|+.+.+||+.
T Consensus 272 ~~~--vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev--~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 272 SAE--VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEV--FQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CCc--eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcce--EEEEeCCCCCceeEecccCCcEEEEecc
Confidence 222 346789985 568899999999999999975 5677888776665 5899999888999999999999999984
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.4e-25 Score=146.05 Aligned_cols=140 Identities=22% Similarity=0.340 Sum_probs=116.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~ 77 (154)
++|+|+|-+|++||.+..-. +.+.+ +|.-.|.+++|+| |.+.|++++-|++|++|.+..+.....+. |..
T Consensus 112 vLtsSDDm~iKlW~we~~wa----~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek--- 184 (794)
T KOG0276|consen 112 VLTSSDDMTIKLWDWENEWA----CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK--- 184 (794)
T ss_pred EEecCCccEEEEeeccCcee----eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc---
Confidence 47899999999999987543 45555 9999999999999 77899999999999999999887765554 322
Q ss_pred ceEeEEEEEEcC--CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGW--DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.+ +.+-+ |..+|++|+.|.+++|||..+..+++++.+|...+ ..+.|+| .-.++++|+.||++++|+-
T Consensus 185 -GVN~--Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv--s~v~fhp-~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 185 -GVNC--VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV--SFVFFHP-ELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred -Ccce--EEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc--eEEEecC-CCcEEEEecCCccEEEecC
Confidence 2333 33443 55799999999999999999999999999988776 4678999 5579999999999999974
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1e-24 Score=129.44 Aligned_cols=146 Identities=16% Similarity=0.328 Sum_probs=120.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc--eeEe-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--AMIH------- 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~--~~~~------- 71 (154)
+++|+.|..+.+||+.+++. ..++.+|.+.|+.++|+.+...+++|+.|.++++||.++.... .++.
T Consensus 74 f~s~GgDk~v~vwDV~TGkv----~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKV----DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS 149 (307)
T ss_pred cccCCCCceEEEEEcccCee----eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence 57899999999999999986 6777799999999999999999999999999999999864321 1110
Q ss_pred ------e----------------------cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC
Q 038702 72 ------H----------------------NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS 123 (154)
Q Consensus 72 ------~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 123 (154)
| ....++++. ++.|+++++..+.++.|+++|+.|-.+|+.+...++|...
T Consensus 150 Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit--~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ 227 (307)
T KOG0316|consen 150 SIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPIT--SVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM 227 (307)
T ss_pred EEEecccEEEeeccCCcEEEEEeecceeehhhcCCcce--eEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc
Confidence 0 001112222 4689999999999999999999999999999999999887
Q ss_pred CcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 124 AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
......+++. ....+++|+.||.|++||+
T Consensus 228 eykldc~l~q-sdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 228 EYKLDCCLNQ-SDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred eeeeeeeecc-cceeEEeccCCceEEEEEe
Confidence 7767777777 5578999999999999997
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3e-24 Score=142.19 Aligned_cols=144 Identities=17% Similarity=0.124 Sum_probs=119.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|++|..|+||+..+.+. ...+..|.+.|++++.+|.--++++++.|-+|++||.+..-...... ..+.+
T Consensus 70 iv~GsDD~~IrVfnynt~ek----V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf--eGH~H-- 141 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEK----VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF--EGHEH-- 141 (794)
T ss_pred EEEecCCceEEEEeccccee----eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE--cCcce--
Confidence 47899999999999999885 66666999999999999999999999999999999998753332221 12333
Q ss_pred eEEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecC-CCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP-HQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+++++|+| |.+.+++++.|++|++|.+.+..+..++.+|..++.+ +.+-+ .+..+|++|+.|.+|++||.|
T Consensus 142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~--Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNC--VDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcce--EEeccCCCcceEEecCCCceEEEeecc
Confidence 456789999 4679999999999999999999999999999888864 44443 245699999999999999975
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=126.78 Aligned_cols=145 Identities=21% Similarity=0.297 Sum_probs=117.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++||.|.++.||.-..++... ...+.+|...|.|++|+++|++|++++.|++|-+|.+............+++.+-+
T Consensus 76 La~aSFD~t~~Iw~k~~~efec--v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEFEC--VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred EEEeeccceEEEeecCCCceeE--EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 5889999999999876544311 23344999999999999999999999999999999998655544444444444444
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCC---CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPA---QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
. .+.|+|...+|++++.|++|++|+-. ..++.+++.+|+..+ .+++|+| .++.|++++.|+++++|-
T Consensus 154 K--~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV--W~~~F~~-~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 154 K--HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV--WSLAFDN-IGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred c--EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE--EEEEecC-CCceEEEecCCcceEeee
Confidence 4 46899999999999999999999766 457889998877644 6889999 789999999999999996
No 33
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=139.04 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=122.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCC----CCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKP----EPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
|++|+.||.|.+|+..+++...- ..-.+.-+..+|.|+.|+.+...+++|+.||.|++|.++++.+...+......
T Consensus 228 LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk 307 (508)
T KOG0275|consen 228 LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK 307 (508)
T ss_pred EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc
Confidence 58999999999999987754221 12234468899999999999999999999999999999999988666432222
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+ +.++.|+.|+..+++++.|.++|+.-+.+|++++.+++|...+ ....|.+ ++..+++++.||+|++|+.
T Consensus 308 G----vt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyv--n~a~ft~-dG~~iisaSsDgtvkvW~~ 377 (508)
T KOG0275|consen 308 G----VTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYV--NEATFTD-DGHHIISASSDGTVKVWHG 377 (508)
T ss_pred C----eeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccc--cceEEcC-CCCeEEEecCCccEEEecC
Confidence 2 3356899999999999999999999999999999999987666 4678888 8899999999999999985
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8e-25 Score=149.72 Aligned_cols=141 Identities=18% Similarity=0.270 Sum_probs=122.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee-EeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM-IHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~-~~~~~~~~~~ 79 (154)
++++-..|.|++||.+.+.. ..++..|.++|+.++|+|..-+|++|+.|-.|++|+..+.++... .+|.. .
T Consensus 24 ILtslHsG~IQlWDYRM~tl----i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD----Y 95 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLWDYRMGTL----IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD----Y 95 (1202)
T ss_pred EEEeecCceeeeehhhhhhH----HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc----e
Confidence 35677899999999998875 556669999999999999999999999999999999998877643 34544 3
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++ .+.|++.-.++++++.|.+||||+..+++++..+.+|...+. +.+|+| ...+++++|-|.+|++||+.
T Consensus 96 VR--t~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM--cAqFhp-tEDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 96 VR--TVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM--CAQFHP-TEDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred eE--EeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEE--eeccCC-ccceEEEecccceEEEEeec
Confidence 34 567999999999999999999999999999999999877764 678999 77899999999999999984
No 35
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.5e-23 Score=140.92 Aligned_cols=143 Identities=18% Similarity=0.221 Sum_probs=105.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|++|+.|++|++||+.++.. ...+.+|...|.+++|+|++++|++++.|++|++||+++++...... |...
T Consensus 141 LaSgs~DgtVrIWDl~tg~~----~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~---- 212 (493)
T PTZ00421 141 LASAGADMVVNVWDVERGKA----VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA---- 212 (493)
T ss_pred EEEEeCCCEEEEEECCCCeE----EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC----
Confidence 57899999999999987653 34445899999999999999999999999999999999877554332 2211
Q ss_pred EeEEEEEEcCCCcEEEEEc----cCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGN----MTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd~ 153 (154)
....+.|.+++..+++++ .|+.|++||++... ++.....+..... ....|++ ++++|++++ .|+.|++||+
T Consensus 213 -~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~-~~~~~d~-d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 213 -KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSAL-FIPFFDE-DTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred -cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCce-EEEEEcC-CCCEEEEEEeCCCeEEEEEe
Confidence 112456888877777654 47899999998754 3333332222222 4456777 777887776 5999999997
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
.
T Consensus 290 ~ 290 (493)
T PTZ00421 290 M 290 (493)
T ss_pred e
Confidence 3
No 36
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=2.2e-24 Score=135.21 Aligned_cols=148 Identities=18% Similarity=0.294 Sum_probs=115.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|..-+.|++|...++. -......+.+|+..|-.++||| ....|++++.||+|+|||++.+........ ..+..-
T Consensus 227 LlsGDc~~~I~lw~~~~g~-W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD 304 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGS-WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD 304 (440)
T ss_pred cccCccccceEeeeeccCc-eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc
Confidence 4677778889999998743 2222445668999999999999 456899999999999999998854433322 223334
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCC---ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ---RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.++ .|+....+|++|+.||+++|||+++ ++++..++-|...+ .++.|+|.....|++++.|.+|.+||+.
T Consensus 305 VNVI--SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI--tsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 305 VNVI--SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI--TSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eeeE--EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe--eEEEeccccCceEEeccCCCcEEEEEee
Confidence 5544 6888888999999999999999985 56778888665444 6899999888899999999999999983
No 37
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=5.5e-23 Score=139.31 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=106.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|++++.|++|++||++++.. .....|...|.+++|+|+|++|++++.|+.|++||+++++....+. |..... .
T Consensus 141 LaSgS~DgtIrIWDl~tg~~-----~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~-s 214 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKR-----AFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN-T 214 (568)
T ss_pred EEEEeCCCeEEEEECCCCcE-----EEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCce-e
Confidence 36889999999999987653 2333567889999999999999999999999999999887654432 322111 1
Q ss_pred EeEEEEEEcCCCcEEEEEccCC----eEEEecCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTR----TVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~----~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.......|++++.++++++.++ .|++||++. .+++..+..+..... ....+.+.++.++++|+.|+.|++|++
T Consensus 215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~-L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP-LIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc-eEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 1112234678999999988664 799999995 566665543332222 334555657889999999999999997
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=1.8e-23 Score=148.60 Aligned_cols=139 Identities=17% Similarity=0.238 Sum_probs=110.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++++.||+|++||+.+++. ...+.+|.+.|++++|+| ++.+|++++.|+.|++||+++......+....
T Consensus 548 las~~~Dg~v~lWd~~~~~~----~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~----- 618 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQL----VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA----- 618 (793)
T ss_pred EEEEeCCCeEEEEECCCCeE----EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC-----
Confidence 57899999999999987653 444558999999999997 78999999999999999998876654443221
Q ss_pred EeEEEEEE-cCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIW-GWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....+.| ++++.++++|+.|+.|++||++..+ .+..+.+|...+ ..+.|. ++.+|++++.|++|++||+
T Consensus 619 -~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V--~~v~f~--~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 619 -NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV--SYVRFV--DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred -CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCE--EEEEEe--CCCEEEEEECCCEEEEEeC
Confidence 2335567 4579999999999999999998765 466666665444 466775 4678999999999999997
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=7.3e-25 Score=136.68 Aligned_cols=142 Identities=19% Similarity=0.273 Sum_probs=80.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN------ 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~------ 74 (154)
+++|..|++|+|||..+... ...+.+|++.|.|+.| +.+.+++|+.|.+|++||.+++++...+.+..
T Consensus 210 iVSGlrDnTikiWD~n~~~c----~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl 283 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLEC----LKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL 283 (499)
T ss_pred hhcccccCceEEeccccHHH----HHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE
Confidence 35677777777777777666 6666677777777777 34577777777777777777665442211000
Q ss_pred ----------CCCceEeEEEE--------------------EEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCC
Q 038702 75 ----------QTGRWISSFRA--------------------IWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA 124 (154)
Q Consensus 75 ----------~~~~~~~~~~~--------------------~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 124 (154)
...+.+.+..+ ...-+.+++++++.|.+|++|++.+++.+.++.+|..+.
T Consensus 284 rf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGI 363 (499)
T KOG0281|consen 284 RFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGI 363 (499)
T ss_pred EEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccc
Confidence 00000111100 112245566677777777777777777666666665554
Q ss_pred cceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 125 IPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+ +++ .+.++++|+.|.+|++||+
T Consensus 364 AC--lQY---r~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 364 AC--LQY---RDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred ee--hhc---cCeEEEecCCCceEEEEec
Confidence 32 222 3456666666666666664
No 40
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=1.7e-24 Score=140.53 Aligned_cols=125 Identities=17% Similarity=0.273 Sum_probs=99.9
Q ss_pred ecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccc-cceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEe
Q 038702 29 LSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFE-NTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVI 106 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 106 (154)
.+|...++|.+|+|. .+.|++++.||++++||+...+ ...++.+....+..+....|+|+++++.+++|+.||.|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 369999999999994 5689999999999999998754 44556665556666777789999999999999999999999
Q ss_pred cCCCc--cceeEEe-CCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 107 SPAQR--RSVATLQ-SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 107 ~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.+.. .+...++ .|..+.-..++.|++ ++++|++-+.|+++++|||.
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeecc
Confidence 98643 2222232 444433447899999 99999999999999999984
No 41
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.7e-24 Score=143.24 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=116.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++++.|.+||+|++.... ++..+.|.+.|+|++|+| |.++|++|+-|+.|+||++...+.........
T Consensus 383 LLSSSMDKTVRLWh~~~~~-----CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~----- 452 (712)
T KOG0283|consen 383 LLSSSMDKTVRLWHPGRKE-----CLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD----- 452 (712)
T ss_pred eEeccccccEEeecCCCcc-----eeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhh-----
Confidence 6789999999999998766 889999999999999999 88999999999999999998776655443222
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCC------cCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+..++|.|+|++.+.|+.+|..++|+.+..+......-+. .....+.+++.|.+...+++.+.|..|+|+|.
T Consensus 453 -lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 453 -LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred -hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 23367899999999999999999999998776654443110 11134788999877777888899999999997
No 42
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=2.4e-23 Score=132.62 Aligned_cols=145 Identities=21% Similarity=0.330 Sum_probs=110.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|+++++|+.+.|||++++ ... ......+|.++|.|++|+| ++..||+|+.|++|++||+|+........ ..+.
T Consensus 243 F~sv~dd~~L~iwD~R~~-~~~-~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~--e~H~-- 316 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSN-TSK-PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF--EGHE-- 316 (422)
T ss_pred heeecCCCeEEEEEcCCC-CCC-CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec--cCCC--
Confidence 578999999999999973 211 1334458999999999999 66788999999999999999876642221 1111
Q ss_pred EeEEEEEEcCCC-cEEEEEccCCeEEEecCCCc--------------cceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 80 ISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQR--------------RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 80 ~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
-.++++.|+|.. ..|++++.|+.+.+||+..- +++..-.||...+ ..+.|+|..+..+++.+.
T Consensus 317 dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV--~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 317 DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV--SDFSWNPNEPWTIASVAE 394 (422)
T ss_pred cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc--ccccCCCCCCeEEEEecC
Confidence 145688999974 58899999999999998631 2233333444443 689999988889999999
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
|+.+.||..
T Consensus 395 DN~LqIW~~ 403 (422)
T KOG0264|consen 395 DNILQIWQM 403 (422)
T ss_pred CceEEEeec
Confidence 999999985
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=2.2e-25 Score=138.97 Aligned_cols=136 Identities=19% Similarity=0.302 Sum_probs=101.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCce-eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTK-VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
++++.|.++.+||+..... ..... +.+|...|..+.| +.+++++++.|.++++|++.+.+....+. |.. .
T Consensus 291 vtcSkDrsiaVWdm~sps~--it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkR----G 362 (499)
T KOG0281|consen 291 VTCSKDRSIAVWDMASPTD--ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR----G 362 (499)
T ss_pred EEecCCceeEEEeccCchH--HHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccc----c
Confidence 3455555555555543221 11222 2389999999999 45699999999999999999988776543 332 1
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.+ .-..++++++|+.|.+||+||++.|.++..+.+|+.-+.+ +.| +.+.+++|.+||+|++||++
T Consensus 363 IAC----lQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRc--iRF---d~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 363 IAC----LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRF---DNKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred cee----hhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhh--eee---cCceeeeccccceEEEEecc
Confidence 222 2346899999999999999999999999999999877764 555 45889999999999999984
No 44
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=2.5e-24 Score=132.49 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=123.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|++|+++|+.+...+ +..+.+....+|.++.|+|.|.+++.|.....+++||+.+.++-.......++...+
T Consensus 187 LiS~srD~tvKlFDfsK~saK--rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAK--RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred EEeccCCCeEEEEecccHHHH--HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 578999999999999764321 133445677899999999999999999999999999999987765444444444444
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. ++.+++.+++.++++.||.|++||--+++++.++...|.+...++..|.. ++.++++.+.|..+++|.+
T Consensus 265 ~--~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 265 T--QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred e--EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeee
Confidence 3 67899999999999999999999999999999998666666668888988 8899999999999999987
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.92 E-value=2.5e-24 Score=138.30 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=117.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------- 70 (154)
+++|+.|+.|+.||++.++. ....-.|-+.|..+.|-++|++|++++.|+++++|+.+.+......
T Consensus 315 fl~G~sd~ki~~wDiRs~kv----vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~ 390 (503)
T KOG0282|consen 315 FLVGGSDKKIRQWDIRSGKV----VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPC 390 (503)
T ss_pred EEEecCCCcEEEEeccchHH----HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcc
Confidence 47899999999999999873 3334489999999999999999999999999999998754322111
Q ss_pred --eec-------------------------------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEE
Q 038702 71 --HHN-------------------------------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL 117 (154)
Q Consensus 71 --~~~-------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 117 (154)
.+. ..+...-..+.+.|+|||.+|++|+.||.+.+||.++-+.+..+
T Consensus 391 ~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 391 LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL 470 (503)
T ss_pred eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc
Confidence 000 01111223446789999999999999999999999999999999
Q ss_pred eCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 118 QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+.|...+ ..+.|+|.....+++++.||.|++||
T Consensus 471 kah~~~c--i~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 471 KAHDQPC--IGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ccCCcce--EEEEecCCCcceeEecccCceeEecC
Confidence 9885444 57899998889999999999999997
No 46
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.4e-24 Score=144.35 Aligned_cols=144 Identities=19% Similarity=0.215 Sum_probs=114.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|||++..|.|.+||+..... ......+..|...+.++.|++ ..++|++|+.||+|++||++.......+....+ .
T Consensus 103 IAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE---S 178 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE---S 178 (839)
T ss_pred heeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch---h
Confidence 68999999999999987211 111334458999999999998 678999999999999999998877655543222 2
Q ss_pred EeEEEEEEcCC-CcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++ .+.|+|. +.+++++...|.+++||++.. ++...+..|.+.+ .++.|+| +..+||+|+.|+.|+|||.
T Consensus 179 iR--DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV--~c~nwhP-nr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 179 IR--DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV--LCLNWHP-NREWLATGGRDKMVKIWDM 249 (839)
T ss_pred hh--ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce--EEEeecC-CCceeeecCCCccEEEEec
Confidence 33 5678884 678899999999999999976 4566666666555 4789999 8899999999999999996
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=6.9e-23 Score=127.92 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=120.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++||+.|....+|++.++.. ...+.+|++.|+++.|+.+|.+|++|..+|.|++|+..++.....+.... . .+
T Consensus 79 ~aTGGgDD~AflW~~~~ge~----~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~--~-di 151 (399)
T KOG0296|consen 79 VATGGGDDLAFLWDISTGEF----AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--E-DI 151 (399)
T ss_pred EEecCCCceEEEEEccCCcc----eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc--C-ce
Confidence 47899999999999998874 66777999999999999999999999999999999999887665553111 1 11
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. -+.|+|.+..|++|+.||.+.+|.+.+....+.+.+|...+. .=.|.| ++..++++..||+|++||+
T Consensus 152 e--Wl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct--~G~f~p-dGKr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 152 E--WLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT--CGEFIP-DGKRILTGYDDGTIIVWNP 219 (399)
T ss_pred E--EEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc--cccccC-CCceEEEEecCceEEEEec
Confidence 1 357999999999999999999999999888888888776664 457888 7999999999999999997
No 48
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.2e-24 Score=143.95 Aligned_cols=142 Identities=21% Similarity=0.328 Sum_probs=114.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeE--eecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMI--HHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~~~~ 77 (154)
|++||.||+|++||++.... ...+.+....|+.++|+| .+..|+++...|.+.+||++........ .|..
T Consensus 149 liSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G--- 221 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG--- 221 (839)
T ss_pred EEecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC---
Confidence 57999999999999998774 455557888999999999 6789999999999999999987665332 2433
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc--CCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT--GGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~wd~ 153 (154)
.++++.|+|++.+||||+.|++|+|||..+++......-+....+ ..+.|-|.....|++++ .|-.|+|||+
T Consensus 222 ---pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv-~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 222 ---PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPV-GRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred ---ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeeccee-eeeeeccCccchhhhhhccccceEEEEee
Confidence 356789999999999999999999999987654433332334444 67999998878888887 5889999997
No 49
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.92 E-value=7.6e-23 Score=122.36 Aligned_cols=139 Identities=19% Similarity=0.270 Sum_probs=113.4
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
...-.||+||+++++..+ ...+.+|...|+++.|..+|+.+++|++||+++|||++.......+.+..+ +. .
T Consensus 58 a~~qhvRlyD~~S~np~P--v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~sp----Vn--~ 129 (311)
T KOG0315|consen 58 AGNQHVRLYDLNSNNPNP--VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSP----VN--T 129 (311)
T ss_pred ccCCeeEEEEccCCCCCc--eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCC----cc--e
Confidence 334579999999876532 445569999999999999999999999999999999999777777766543 22 4
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+..+|+...|++|..+|.|++||+....+...+-.... ....++...| ++.+++.+...|..++|++
T Consensus 130 vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~-~~i~sl~v~~-dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD-TSIQSLTVMP-DGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred EEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC-cceeeEEEcC-CCcEEEEecCCccEEEEEc
Confidence 56799999999999999999999998876666653333 3336788888 8899999999999999986
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=2.4e-23 Score=130.53 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=113.3
Q ss_pred CeeecCCCcEEEEEccCCCC--------------------CCCCC-ceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEE
Q 038702 1 MATSSTDGTACIWDLRSMAT--------------------DKPEP-TKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 59 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~--------------------~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~ 59 (154)
+++|+.|.++++|+...... ....+ ..+.+|..+|.++.|++ ...+++++.|.+|+.|
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~W 286 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVW 286 (423)
T ss_pred EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEE
Confidence 47899999999999322110 00012 22348999999999998 6688999999999999
Q ss_pred eccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc---ceeEEeCCCcCCcceEEEecCCCc
Q 038702 60 SGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR---SVATLQSPYISAIPCRFHAHPHQV 136 (154)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 136 (154)
|++++.....+.... ...++..+|...+|++|+.|..+|+||.+++. ..+++.+|...+ .++.|+|.+.
T Consensus 287 Dletg~~~~~~~~~k------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV--ssvkwsp~~~ 358 (423)
T KOG0313|consen 287 DLETGGLKSTLTTNK------SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV--SSVKWSPTNE 358 (423)
T ss_pred EeecccceeeeecCc------ceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh--hheecCCCCc
Confidence 999988776554332 23466789999999999999999999999764 345666776644 5789999888
Q ss_pred cEEEEEcCCCeEEEeeCC
Q 038702 137 GTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 137 ~~l~~~~~d~~i~~wd~~ 154 (154)
.+|++|+.|+++++||+.
T Consensus 359 ~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 359 FQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred eEEEEEecCCeEEEEEec
Confidence 899999999999999973
No 51
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.6e-23 Score=128.33 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=117.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC----------C-----CEEEEeeCCCeEEEEeccccc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS----------G-----SSLATTSFDDTIGIWSGVNFE 65 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~l~~~~~d~~v~~~~~~~~~ 65 (154)
+++|+.|.+|++|-+.+++. ...+..|.-+|-+++|.|. + +.+.+++.|++|++||+.++.
T Consensus 250 ~As~s~dqtl~vW~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQC----KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred EEecCCCceEEEEEeccchh----hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 57899999999999998864 4555689999999999772 2 489999999999999999997
Q ss_pred cceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 66 NTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
+...+. .+..+++ .++|+|.|+||+++..|+++++||+++.+++.++..|...+ ..+.|+. +..++++|+-|
T Consensus 326 cL~tL~---ghdnwVr--~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv--t~lDfh~-~~p~VvTGsVd 397 (406)
T KOG0295|consen 326 CLFTLV---GHDNWVR--GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFV--TSLDFHK-TAPYVVTGSVD 397 (406)
T ss_pred EEEEEe---cccceee--eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCccee--EEEecCC-CCceEEecccc
Confidence 765553 2233454 56899999999999999999999999999999999665444 5678887 56799999999
Q ss_pred CeEEEeeC
Q 038702 146 GQVYVWTS 153 (154)
Q Consensus 146 ~~i~~wd~ 153 (154)
.++++|..
T Consensus 398 qt~KvwEc 405 (406)
T KOG0295|consen 398 QTVKVWEC 405 (406)
T ss_pred ceeeeeec
Confidence 99999975
No 52
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.91 E-value=1.3e-22 Score=131.92 Aligned_cols=145 Identities=21% Similarity=0.305 Sum_probs=115.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++||++|++|.+|+-...+. ...+..|...|.|++|+|||++|++++.||++.+||=.+++....+.....+ .-
T Consensus 163 i~T~sdDn~v~ffeGPPFKF----k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aH--kG 236 (603)
T KOG0318|consen 163 IATGSDDNTVAFFEGPPFKF----KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAH--KG 236 (603)
T ss_pred EEeccCCCeEEEeeCCCeee----eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCc--cc
Confidence 58999999999998654432 3334479999999999999999999999999999999999888777643222 33
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC-----------------------------------------
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS----------------------------------------- 119 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~----------------------------------------- 119 (154)
.++.+.|+||+..+++++.|.+++|||+.+.+++.++..
T Consensus 237 sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i 316 (603)
T KOG0318|consen 237 SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI 316 (603)
T ss_pred cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee
Confidence 567889999999999999999999999987665544431
Q ss_pred -CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 120 -PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 120 -~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.|...+ .++..+| ++.+|.+|++||.|.-||+
T Consensus 317 ~GHnK~I-TaLtv~~-d~~~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 317 SGHNKSI-TALTVSP-DGKTIYSGSYDGHINSWDS 349 (603)
T ss_pred cccccce-eEEEEcC-CCCEEEeeccCceEEEEec
Confidence 122222 4677788 6789999999999999986
No 53
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.91 E-value=5.3e-23 Score=132.12 Aligned_cols=139 Identities=18% Similarity=0.297 Sum_probs=116.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
||+|+.||.+++|+..... ...+-.|+++|.+++|+..|+++++++.|+++.+||..++.....+.....
T Consensus 250 LatG~~~G~~riw~~~G~l-----~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~----- 319 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKDGNL-----ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA----- 319 (524)
T ss_pred EEEeecCcEEEEEecCchh-----hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccC-----
Confidence 6899999999999987653 444558999999999999999999999999999999988877665543221
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+.+.|- +...+++++.|+.|+++.+....++.++.+|+..+ ..+.|+| .+.+|++++.|+++++|..
T Consensus 320 ~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V--~alk~n~-tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 320 PALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV--NALKWNP-TGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred CccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCce--EEEEECC-CCceEEEecCCCeeEeeec
Confidence 12455676 45678899999999999999999999999977776 5789999 8899999999999999984
No 54
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=8e-23 Score=125.02 Aligned_cols=140 Identities=21% Similarity=0.335 Sum_probs=109.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++++|.|++||+|+++...... ......|.++|.+++|+.+|..+++|+.|+.+++||+.+++...+-.|..+ +
T Consensus 43 ~~A~SWD~tVR~wevq~~g~~~--~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~p----v 116 (347)
T KOG0647|consen 43 LAAGSWDGTVRIWEVQNSGQLV--PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAP----V 116 (347)
T ss_pred EEecccCCceEEEEEecCCccc--chhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccc----e
Confidence 3589999999999998743211 333448999999999999999999999999999999999977766666553 3
Q ss_pred eEEEEEEcCC--CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+ +.|-+. ...|+||+.|.+|++||.++..++.++..+. .+.+.++ ...+++.+..++.|.+|+|+
T Consensus 117 kt--~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv-----~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 117 KT--CHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV-----LYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eE--EEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc-----cCceeEEEecCCcEEEEEcC
Confidence 43 345443 4589999999999999999999998887543 2221222 33588889999999999984
No 55
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.4e-24 Score=144.32 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=121.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.+|+|++||+...+. ...+.+|...+.++.|+|-+.++++|+.|+-+++||.+...+...+.. +...+
T Consensus 85 laagsasgtiK~wDleeAk~----vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s---~~~vv 157 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEEAKI----VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS---HTRVV 157 (825)
T ss_pred hcccccCCceeeeehhhhhh----hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC---Cccee
Confidence 57899999999999997764 556669999999999999999999999999999999998777765543 22223
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
. .+.|+|+|++++.++.|..++|||...|+.+..+++|...+. .+.++| ..-++++|+.|+++++||++
T Consensus 158 ~--~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~--sle~hp-~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 158 D--VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQ--SLEFHP-LEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred E--EEeecCCCceeeccCCcceeeeeccccccccccccccccccc--ccccCc-hhhhhccCCCCceeeeeccc
Confidence 3 357999999999999999999999999999999998877775 567999 66789999999999999974
No 56
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.4e-23 Score=132.26 Aligned_cols=139 Identities=15% Similarity=0.232 Sum_probs=109.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEecccc-ccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNF-ENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~~~~~~~~ 78 (154)
|++|++|+.+++||+.+... ...+.+|++.|.|.+|+| ++..+++|++||+|++||.+.. .....+.|..+
T Consensus 126 l~s~sDd~v~k~~d~s~a~v----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~p--- 198 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYV----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCP--- 198 (487)
T ss_pred EEecCCCceEEEEEcCCcEE----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCc---
Confidence 47899999999999987652 445669999999999999 5668999999999999999987 44455555443
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce-eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV-ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+. .+.+-|.|..+++++ .+.+++||+.+|..+ ..+..|+..+ +++++.. ++..|++|+-|+.+++||.
T Consensus 199 -Ve--~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtV--TcL~l~s-~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 199 -VE--SVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTV--TCLRLAS-DSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred -ee--eEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceE--EEEEeec-CCceEeecccccceEEEEc
Confidence 22 456889999998887 557999999966544 4444455555 4667776 6789999999999999995
No 57
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.1e-23 Score=136.66 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=119.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEE-cCCCCEEEEeeCCCeEEEEecccccc--ceeE---eec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYF-SPSGSSLATTSFDDTIGIWSGVNFEN--TAMI---HHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~-~~~~~~l~~~~~d~~v~~~~~~~~~~--~~~~---~~~ 73 (154)
|+++|.|.+|++|+...... .+.... .|.+.|.|+++ .++..++++|+-|+.|.+||+.++.. ...+ ...
T Consensus 88 lIS~SsDtTVK~W~~~~~~~---~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNT---FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred eEEecCCceEEEeecccCcc---hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 57899999999999987641 144444 89999999999 77889999999999999999997633 1111 111
Q ss_pred -CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 74 -NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 74 -~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
...+.....++++.++.+..+++|+..+.+++||.++.+.+..+++|...+. .+..++ ++..+++++.||+|++||
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr--~ll~~d-DGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR--VLLVND-DGTRLLSASSDGTIRLWD 241 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE--EEEEcC-CCCeEeecCCCceEEeee
Confidence 1124445667888899999999999999999999999999999999887775 456676 889999999999999999
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 242 L 242 (735)
T KOG0308|consen 242 L 242 (735)
T ss_pred c
Confidence 8
No 58
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=1.4e-23 Score=136.40 Aligned_cols=148 Identities=16% Similarity=0.239 Sum_probs=109.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee------cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
++|++.||++|+||+...+. ..+.+ +..-+++.++|+|++.++++|+.||+|.+|+.........+....
T Consensus 284 FlT~s~DgtlRiWdv~~~k~----q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKS----QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred eEEecCCCcEEEEecCCchh----heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee
Confidence 57999999999999987554 33333 234578899999999999999999999999986654433222222
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcC------CCe
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG------GGQ 147 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~ 147 (154)
.+.....+.++.|+++|++|++-+.|+++++||+++. +++....+.........++|+| +.++|++|+. .|+
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCce
Confidence 2222112346789999999999999999999999975 5666665554444446789999 7789998863 456
Q ss_pred EEEeeC
Q 038702 148 VYVWTS 153 (154)
Q Consensus 148 i~~wd~ 153 (154)
+.+||.
T Consensus 439 L~f~d~ 444 (641)
T KOG0772|consen 439 LFFFDR 444 (641)
T ss_pred EEEEec
Confidence 777763
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=1.3e-22 Score=121.64 Aligned_cols=138 Identities=15% Similarity=0.231 Sum_probs=114.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++.++|++||+||.+++. ..+......+|+++.++++|+++..+ ..+.|+.||..+......+..+..
T Consensus 158 iLSSadd~tVRLWD~rTgt-----~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n----- 226 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGT-----EVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN----- 226 (334)
T ss_pred EEeeccCCceEEEEeccCc-----EEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc-----
Confidence 3567899999999999987 56666778889999999999876554 667899999998887765544332
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEE-eCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL-QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+-+...+|+...+++|+.|..++.||..+++.+..+ ++|+..+ .++.|+| +++..++|+.||+|++|..
T Consensus 227 -V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpV--hcVrFSP-dGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 227 -VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPV--HCVRFSP-DGELYASGSEDGTIRLWQT 296 (334)
T ss_pred -cccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCce--EEEEECC-CCceeeccCCCceEEEEEe
Confidence 224567899999999999999999999999998886 6776666 4789999 8999999999999999964
No 60
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=2.7e-22 Score=127.94 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=122.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++++.|..|+||....... +.....|..+|+.+..+|.|.+|++++.|++....|++++.......+. ...+.
T Consensus 277 ~~aSad~~i~vws~~~~s~----~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~ 349 (506)
T KOG0289|consen 277 ITASADEIIRVWSVPLSSE----PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVE 349 (506)
T ss_pred eecCCcceEEeeccccccC----ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec---cccce
Confidence 6789999999999987654 5555689999999999999999999999999999999998887665543 11233
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+.+|+|||..+.+|..|+.++|||+.++..+..|.+|...+ ..++|+- +|.+|+++..|+.|++||+.
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v--k~i~FsE-NGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV--KAISFSE-NGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCce--eEEEecc-CceEEEEEecCCeEEEEEeh
Confidence 4467899999999999999999999999999999999876665 4678887 88999999999999999983
No 61
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=2.7e-23 Score=129.89 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=116.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|++++.|++|+.||+..++. .....+|-+.|.|++..|.-..|++|+.|.++++||+++......+. |...
T Consensus 208 lFs~gedk~VKCwDLe~nkv----IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~---- 279 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEYNKV----IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP---- 279 (460)
T ss_pred EEEecCCCeeEEEechhhhh----HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc----
Confidence 47899999999999998874 55556999999999999999999999999999999999987765553 5443
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.++.+.|....+++|+.|++|++||++.++...++..|...+ .+++.+| ....|++++.| .|+-|++
T Consensus 280 --V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv--ral~lhP-~e~~fASas~d-nik~w~~ 347 (460)
T KOG0285|consen 280 --VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV--RALCLHP-KENLFASASPD-NIKQWKL 347 (460)
T ss_pred --ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccccee--eEEecCC-chhhhhccCCc-cceeccC
Confidence 3356677878889999999999999999999999988665555 5789999 77888988887 5677765
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.7e-23 Score=128.96 Aligned_cols=145 Identities=17% Similarity=0.204 Sum_probs=123.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|+.||.|++|.++++.. ..++. .|...|+|+.|+.++..+.+++.|.++++.-+.+++....+.- +...
T Consensus 278 lAsGsqDGkIKvWri~tG~C----lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG---HsSy 350 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQC----LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG---HSSY 350 (508)
T ss_pred hhccCcCCcEEEEEEecchH----HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC---cccc
Confidence 58999999999999999985 55555 8999999999999999999999999999999999888765531 1212
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+ -.+.|.++|.++++++.||+|++|+..+.+++.+++..........+..-|.++..++.+....++++-+++
T Consensus 351 v--n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 351 V--NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred c--cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 2 256799999999999999999999999999999998665555556778888888999999999999998764
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=1.2e-22 Score=127.47 Aligned_cols=141 Identities=16% Similarity=0.277 Sum_probs=114.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+.+++.|.+|+.||+.++.. .....-...+.++..+|..++|++|+.|..+++||.+++...........+..++
T Consensus 274 ~yS~SwDHTIk~WDletg~~-----~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV 348 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGL-----KSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV 348 (423)
T ss_pred eEeecccceEEEEEeecccc-----eeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh
Confidence 36899999999999998873 4344456679999999999999999999999999999986655444433444455
Q ss_pred eEEEEEEcCCC-cEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
. .+.|+|.. ..|++++.|+++++||+|+.+ ++..+.+|...+ .++.|+ ++.++++|+.|++|+++.
T Consensus 349 s--svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKv--l~vdW~--~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 349 S--SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKV--LSVDWN--EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred h--heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceE--EEEecc--CCceEEeccCcceEEEec
Confidence 5 56899975 468899999999999999877 899999886666 477887 467999999999999974
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.90 E-value=1.2e-21 Score=139.44 Aligned_cols=146 Identities=16% Similarity=0.254 Sum_probs=110.6
Q ss_pred CeeecCCCcEEEEEccCCCC---CCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMAT---DKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
|++|+.|+.|++|+...... ....+.....+...+.+++|+| .+++|++++.|++|++||+.+.+....+. .+
T Consensus 498 latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~---~H 574 (793)
T PLN00181 498 FATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK---EH 574 (793)
T ss_pred EEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec---CC
Confidence 57999999999999864211 0001122234567899999988 57899999999999999998766544332 12
Q ss_pred CceEeEEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 77 GRWISSFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 77 ~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.. .+.+++|+| ++.+|++|+.|+.|++||++++..+..+..+ . . ...+.|++.++.+|++|+.||.|++||+.
T Consensus 575 ~~--~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~-~-v~~v~~~~~~g~~latgs~dg~I~iwD~~ 648 (793)
T PLN00181 575 EK--RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-A-N-ICCVQFPSESGRSLAFGSADHKVYYYDLR 648 (793)
T ss_pred CC--CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-C-C-eEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 22 345778986 7889999999999999999999888888743 2 2 25678876578999999999999999973
No 65
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.3e-22 Score=136.38 Aligned_cols=149 Identities=20% Similarity=0.230 Sum_probs=123.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC---CCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN---QTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~---~~~ 77 (154)
+|.||+|-.|++-++.+... ...+.+|.++|.++.|+|++++|++.+.||.|++|++.++.......... ...
T Consensus 111 iaagsdD~~vK~~~~~D~s~----~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 111 IAAGSDDTAVKLLNLDDSSQ----EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred EEeecCceeEEEEeccccch----heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 47899999999999988764 56667999999999999999999999999999999999877664443111 111
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..-.+..++|+|++..++..+.|+.|.+|+...++....+.........+.++|+| .|.||++++.||.|-|||.+
T Consensus 187 ~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 187 LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcEEeeeccCCcEEEEecc
Confidence 01123468999998888888999999999999999999888655555457899999 89999999999999999975
No 66
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-21 Score=119.40 Aligned_cols=145 Identities=17% Similarity=0.232 Sum_probs=111.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc-ce-eEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-TA-MIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-~~-~~~~~~~~~~ 78 (154)
+++++.|++|++||++..+. .-.. +...-..++|+|+|-.||++...+.|++||++.... +. .+.... +.
T Consensus 115 FlS~S~D~tvrLWDlR~~~c-----qg~l-~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--~~ 186 (311)
T KOG1446|consen 115 FLSSSLDKTVRLWDLRVKKC-----QGLL-NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--ND 186 (311)
T ss_pred EEecccCCeEEeeEecCCCC-----ceEE-ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--CC
Confidence 47899999999999996653 3222 222334678999999999999888999999998633 32 222221 11
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCC-cceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA-IPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....-.+.|+|+|++++.+...+.+++.|.-+|..+.++..+.... .....+|.| +++++++|+.||+|.+|++.
T Consensus 187 ~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 187 EAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred ccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcC
Confidence 2223367899999999999999999999999999888888665433 446788999 89999999999999999973
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=8.2e-23 Score=125.90 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=113.6
Q ss_pred CeeecCCCcEEEEEccCC------------C-C-CCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc
Q 038702 1 MATSSTDGTACIWDLRSM------------A-T-DKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 66 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~------------~-~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~ 66 (154)
++||+.|..|+|.|++.. . . ..+....+..|.++|+++.|+|....|++++.|++|+++|......
T Consensus 127 vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa 206 (430)
T KOG0640|consen 127 VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA 206 (430)
T ss_pred EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH
Confidence 478999999999998721 1 1 1122233448999999999999999999999999999999987655
Q ss_pred ceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC--CCcCCcceEEEecCCCccEEEEEcC
Q 038702 67 TAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS--PYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
...+.... ....+. ++.|+|.|.+|+.|....++|+||+.+.++...... ++...+ +++.+++ .+++.++++.
T Consensus 207 KrA~K~~q-d~~~vr--siSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai-~~V~Ys~-t~~lYvTaSk 281 (430)
T KOG0640|consen 207 KRAFKVFQ-DTEPVR--SISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI-TQVRYSS-TGSLYVTASK 281 (430)
T ss_pred HHHHHHhh-ccceee--eEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce-eEEEecC-CccEEEEecc
Confidence 43333222 122333 567999999999999999999999999887655442 233343 6789998 8899999999
Q ss_pred CCeEEEee
Q 038702 145 GGQVYVWT 152 (154)
Q Consensus 145 d~~i~~wd 152 (154)
||.|++||
T Consensus 282 DG~IklwD 289 (430)
T KOG0640|consen 282 DGAIKLWD 289 (430)
T ss_pred CCcEEeec
Confidence 99999998
No 68
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=1.4e-22 Score=123.76 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=119.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++++.|.+|+.||+++++. ..++.+|.+.|.++.-+.-| .++.+++.|+++++||+++......+....
T Consensus 105 i~S~gtDk~v~~wD~~tG~~----~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ky----- 175 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAETGKR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKY----- 175 (338)
T ss_pred EEEecCCceEEEEeccccee----eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccce-----
Confidence 47899999999999999886 66777999999999855544 467788999999999999887766553322
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....+.|..++..+.+|+-|+.|++||++..+.+..+.+|...+ +.+..+| .+.++.+-+.|.++++||+
T Consensus 176 -qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtI--t~lsls~-~gs~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 176 -QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTI--TGLSLSR-YGSFLLSNSMDNTVRVWDV 245 (338)
T ss_pred -eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCce--eeEEecc-CCCccccccccceEEEEEe
Confidence 23467899999999999999999999999999999999987766 4788888 7899999999999999996
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.1e-23 Score=131.10 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=110.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc--------eeE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--------AMI 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~--------~~~ 70 (154)
|++|+.|..+.+||+.++. ..... +|...+.+++|.|||..+++|+.|+.+..||+...... .+.
T Consensus 284 LlaCg~~e~~~lwDv~tgd-----~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 284 LLACGFDEVLSLWDVDTGD-----LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVH 358 (519)
T ss_pred EEecCchHheeeccCCcch-----hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeE
Confidence 5789999999999999987 34444 45689999999999999999999999999988632100 000
Q ss_pred e---------------e---------------cCCCCceE----------------------------------------
Q 038702 71 H---------------H---------------NNQTGRWI---------------------------------------- 80 (154)
Q Consensus 71 ~---------------~---------------~~~~~~~~---------------------------------------- 80 (154)
. . .......+
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq 438 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ 438 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc
Confidence 0 0 00000000
Q ss_pred --eEEEEEEcC-CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 --SSFRAIWGW-DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 --~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..++-+|.. +..++++|++|+.|+||+..+++++.++.+|...+ ..++|+|.++.++|+++.||+|++|-+
T Consensus 439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~v--NcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTV--NCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCccee--eEEecCCCCHHHhhccCCCCeEEEecC
Confidence 111235554 44789999999999999999999999999987555 578999999999999999999999965
No 70
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=7.7e-22 Score=125.90 Aligned_cols=141 Identities=20% Similarity=0.295 Sum_probs=113.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccc-eeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT-AMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~~ 77 (154)
||+||.|.+|++||+.++++ ...+ .|...|.+++|+| .+..|++|+.|++|.+.|.+..... ........
T Consensus 259 LaSgsaD~TV~lWD~~~g~p-----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~-- 331 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKP-----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE-- 331 (463)
T ss_pred EEecCCCceEEEEEcCCCCc-----ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc--
Confidence 68999999999999999884 4444 6899999999999 6789999999999999999964332 22222221
Q ss_pred ceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 78 RWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 78 ~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+=.++|.|.. ..++++..||+|+-+|+|.. +++.+++.|...+. .+++++..+.++++++.|+.|++|+++
T Consensus 332 ----VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS--gl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 332 ----VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS--GLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred ----eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc--eEEecCCCCcceeeccccceEEEEeec
Confidence 1256788854 57778889999999999965 89999998877664 677777788999999999999999974
No 71
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.89 E-value=3.8e-22 Score=121.97 Aligned_cols=145 Identities=21% Similarity=0.304 Sum_probs=120.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc---eeEeecCCCCc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---AMIHHNNQTGR 78 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~---~~~~~~~~~~~ 78 (154)
.+|+-|+.|++||++.+.. ...+.+|.++|+.+..+|+|.++.+-+.|.++++||++..... ........+.-
T Consensus 190 ~sggIdn~ikvWd~r~~d~----~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDG----LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred eeccccCceeeeccccCcc----eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 5789999999999998775 5556699999999999999999999999999999999864322 22222222333
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....+.+.|+|++.++.+|+.|+.+++||......+..+.+|...+ ..++|+| ...+|.+++.|.+|++=++
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsv--n~~~Fhp-~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSV--NEVDFHP-TEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeE--EEeeecC-CCcEEEEeccCceeEeecc
Confidence 3455688999999999999999999999999999999999887666 5789999 7789999999999987554
No 72
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=1.8e-21 Score=121.65 Aligned_cols=144 Identities=18% Similarity=0.234 Sum_probs=115.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee--------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH-------- 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~-------- 72 (154)
|++|+.||.+-+|.+.+... ...+.+|..++++-+|.|+|++++++..||+|++||+.++.+......
T Consensus 163 llAG~~DGsvWmw~ip~~~~----~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~ 238 (399)
T KOG0296|consen 163 LLAGSTDGSVWMWQIPSQAL----CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPC 238 (399)
T ss_pred EEeecCCCcEEEEECCCcce----eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCc
Confidence 57899999999999988642 444459999999999999999999999999999999986543221110
Q ss_pred --------------------------------cC----------------------------------------------
Q 038702 73 --------------------------------NN---------------------------------------------- 74 (154)
Q Consensus 73 --------------------------------~~---------------------------------------------- 74 (154)
.+
T Consensus 239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~ 318 (399)
T KOG0296|consen 239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS 318 (399)
T ss_pred cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence 00
Q ss_pred ------CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 75 ------QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 75 ------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
++. ..+.++.|-+ ..+|++++.+|+|+.||.++|+++.++.+|...+ ..++.+| +.+++++++.|++.
T Consensus 319 ~~R~~c~he--~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~I--l~f~ls~-~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 319 TLRHICEHE--DGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGI--LDFALSP-QKRLVVTVSDDNTA 392 (399)
T ss_pred hhheeccCC--CceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchhe--eEEEEcC-CCcEEEEecCCCeE
Confidence 000 1122346776 6789999999999999999999999999988776 4789999 88999999999999
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
++|+.+
T Consensus 393 ~VF~v~ 398 (399)
T KOG0296|consen 393 LVFEVP 398 (399)
T ss_pred EEEecC
Confidence 999863
No 73
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.7e-21 Score=119.88 Aligned_cols=148 Identities=18% Similarity=0.279 Sum_probs=113.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeec-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHN------- 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~------- 73 (154)
|++|++||.|.+|+...... ...+.+|.+.|+.++++|.+++-++.+.|+.+++||+-.++......-.
T Consensus 100 LlS~sdDG~i~iw~~~~W~~----~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~ 175 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSWEL----LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVS 175 (362)
T ss_pred eeeecCCCcEEEEEcCCeEE----eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeE
Confidence 57899999999999988763 4445599999999999999999999999999999999876644322100
Q ss_pred -CCCCc-eE-------------------------eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcc
Q 038702 74 -NQTGR-WI-------------------------SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 126 (154)
Q Consensus 74 -~~~~~-~~-------------------------~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 126 (154)
.+.+. .+ ..+++.|- ++.+|++|..|+.|++||..+..+...+.+|...+-.
T Consensus 176 w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~ 254 (362)
T KOG0294|consen 176 WSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKD 254 (362)
T ss_pred EcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheee
Confidence 01111 11 11112222 6778999999999999999999999999988877764
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+.-+| .+.+|++++.||.|++||++
T Consensus 255 i~~~~~~-~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 255 IASYTNP-EHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eEEEecC-CceEEEEeccCceEEEEEcc
Confidence 4444555 67899999999999999985
No 74
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=2.6e-21 Score=122.15 Aligned_cols=138 Identities=28% Similarity=0.384 Sum_probs=111.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (154)
++++.|+.|++||++..+. ...+..|...+.++.|+|+++.+++++.++.+++||++..+....+ .+..
T Consensus 151 ~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~------ 220 (289)
T cd00200 151 ASSSQDGTIKLWDLRTGKC----VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN------ 220 (289)
T ss_pred EEEcCCCcEEEEEcccccc----ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC------
Confidence 4556699999999986653 4444588889999999999999999999999999999876555444 2221
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
....+.|+|++.++++++.++.+++|++.+++.+..+..+.... ..++|+| ++.+|++++.|+.+++|+
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i--~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV--TSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcE--EEEEECC-CCCEEEEecCCCeEEecC
Confidence 23457899998888888889999999999988888887554333 6789999 678999999999999996
No 75
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=8.3e-21 Score=119.84 Aligned_cols=142 Identities=21% Similarity=0.292 Sum_probs=113.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++++.|+.|++|++...+. ...+..|...+.++.|+|+++++++++.++.+.+||+++.+....+. .+..
T Consensus 66 l~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-- 136 (289)
T cd00200 66 LASGSSDKTIRLWDLETGEC----VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTD-- 136 (289)
T ss_pred EEEEcCCCeEEEEEcCcccc----eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---cCCC--
Confidence 47888999999999987643 44555888899999999998888888889999999998665544433 1111
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
....+.|+|++.++++++.++.+++||+++++.+..+..+.... ..+.++| +++.+++++.|+.|++||+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~-~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV--NSVAFSP-DGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcccc--ceEEECC-CcCEEEEecCCCcEEEEECC
Confidence 23466899999999998889999999999888888887554333 5789999 66788888889999999973
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=123.56 Aligned_cols=143 Identities=21% Similarity=0.185 Sum_probs=117.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC-CCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ-TGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (154)
++|-.|++|++||.+... ......-.+.|+++..++++..+.+++.|.++.+.|+++.+....+..... .+..
T Consensus 316 ~SgH~DkkvRfwD~Rs~~-----~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD- 389 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSAD-----KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD- 389 (459)
T ss_pred eecccccceEEEeccCCc-----eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc-
Confidence 567788999999988766 344444455999999999999999999999999999999887766643221 1111
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
...+.|+|++.|+++|+.||.|+||++.++++...+...+......++.|+| .+..+++++.++.+.+|.
T Consensus 390 -wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 390 -WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred -cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEecC
Confidence 2257899999999999999999999999999999998776664458899999 789999999999999993
No 77
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.3e-21 Score=116.45 Aligned_cols=136 Identities=15% Similarity=0.190 Sum_probs=109.2
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
++|+.|.+|++|+...+. +++.. +|...|..++.+.+...|++++.|..+.+||+.+++....+. |.. .
T Consensus 33 ltcGsdrtvrLWNp~rg~-----liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a----q 103 (307)
T KOG0316|consen 33 LTCGSDRTVRLWNPLRGA-----LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA----Q 103 (307)
T ss_pred EEcCCCceEEeecccccc-----eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccc----e
Confidence 689999999999998876 45444 999999999999999999999999999999999998775543 333 2
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCC--ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ--RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+. .++|+.+...+++|+.|..+|+||.++ .++++.+......+. ++.. .+..+++|+.||+++.||+
T Consensus 104 VN--tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~--Si~v---~~heIvaGS~DGtvRtydi 172 (307)
T KOG0316|consen 104 VN--TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS--SIDV---AEHEIVAGSVDGTVRTYDI 172 (307)
T ss_pred ee--EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee--EEEe---cccEEEeeccCCcEEEEEe
Confidence 33 568999999999999999999999985 467777764444443 3333 3456888889999998886
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.88 E-value=1.8e-21 Score=131.51 Aligned_cols=137 Identities=18% Similarity=0.263 Sum_probs=111.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|.++++||..++.. ...+.+|.+.|.++.. ....+++|+.|.+|++|+++++.....+.. +...+
T Consensus 264 lvsgS~D~t~rvWd~~sg~C----~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~---h~~~V 334 (537)
T KOG0274|consen 264 LVSGSTDKTERVWDCSTGEC----THSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRG---HTGPV 334 (537)
T ss_pred EEEEecCCcEEeEecCCCcE----EEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEecc---ccccE
Confidence 57899999999999998884 4444489999999987 456788899999999999998887776652 22234
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.++ .. ++.++++|+.|++|++||+.+++++.++.+|...+. ++.+.+ . +.+++|+.|++|++||+.
T Consensus 335 ~~v--~~--~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~--sl~~~~-~-~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 335 NCV--QL--DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY--SLIVDS-E-NRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred EEE--Ee--cCCEEEEEecCceEEEEEhhhceeeeeecCCcceEE--EEEecC-c-ceEEeeeeccceEeecCC
Confidence 433 23 388999999999999999999999999999876665 455544 2 899999999999999984
No 79
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=3.9e-21 Score=129.80 Aligned_cols=140 Identities=16% Similarity=0.255 Sum_probs=115.7
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
|+.=|++-||+.+.... ..+..+|...+.+++++|||+++++|+.||.|++||...+.+...+.. +...+.
T Consensus 326 ~~klgQLlVweWqsEsY----VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte---Hts~Vt-- 396 (893)
T KOG0291|consen 326 CSKLGQLLVWEWQSESY----VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE---HTSGVT-- 396 (893)
T ss_pred CCccceEEEEEeeccce----eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc---CCCceE--
Confidence 34457999999998775 666779999999999999999999999999999999998877665542 222233
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC-eEEEeeCC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG-QVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~wd~~ 154 (154)
.+.|+..++.+++++.||+||.||+...+..+++..+.... ..+++.+| .+.+++.|+.|. .|++|+++
T Consensus 397 ~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q-fscvavD~-sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 397 AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ-FSCVAVDP-SGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCcee-eeEEEEcC-CCCEEEeeccceEEEEEEEee
Confidence 45789999999999999999999999999999998765443 36788888 778999998876 59999875
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=2e-21 Score=134.88 Aligned_cols=148 Identities=20% Similarity=0.292 Sum_probs=114.7
Q ss_pred Ceeec--CCCcEEEEEccCCC-------CCCCCCc-eeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE
Q 038702 1 MATSS--TDGTACIWDLRSMA-------TDKPEPT-KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI 70 (154)
Q Consensus 1 l~~~~--~d~~v~vw~~~~~~-------~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~ 70 (154)
++||+ .|+.+++|+...-. ...+... ....|.+.|.|+.|+|||++||+|+.|+.|.+|..........+
T Consensus 28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f 107 (942)
T KOG0973|consen 28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVF 107 (942)
T ss_pred EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccc
Confidence 47888 89999999975421 1111222 33489999999999999999999999999999998741100011
Q ss_pred ---------------eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCC
Q 038702 71 ---------------HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQ 135 (154)
Q Consensus 71 ---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (154)
.....+. ..+..++|+|++.+|++++.|++|.+|+.++.+.+..+++|+..+. .+.|+| -
T Consensus 108 gs~g~~~~vE~wk~~~~l~~H~--~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK--Gvs~DP-~ 182 (942)
T KOG0973|consen 108 GSTGGAKNVESWKVVSILRGHD--SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK--GVSWDP-I 182 (942)
T ss_pred cccccccccceeeEEEEEecCC--CccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc--ceEECC-c
Confidence 1111111 1234679999999999999999999999999999999999887775 689999 8
Q ss_pred ccEEEEEcCCCeEEEeeC
Q 038702 136 VGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 136 ~~~l~~~~~d~~i~~wd~ 153 (154)
+++|++-+.|++|++|+.
T Consensus 183 Gky~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 183 GKYFASQSDDRTLKVWRT 200 (942)
T ss_pred cCeeeeecCCceEEEEEc
Confidence 899999999999999985
No 81
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=3.1e-21 Score=118.22 Aligned_cols=145 Identities=19% Similarity=0.287 Sum_probs=115.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCC-------CC----ceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccce
Q 038702 1 MATSSTDGTACIWDLRSMATDKP-------EP----TKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTA 68 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~-------~~----~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~ 68 (154)
+++|+.||.+.+||++....... .+ ..-.+|+..|.++.|=| |.-.|.+++.|.++++||..+.+...
T Consensus 59 mlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~ 138 (397)
T KOG4283|consen 59 MLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV 138 (397)
T ss_pred EeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE
Confidence 47899999999999976442110 01 11126888999999999 66689999999999999999887776
Q ss_pred eEeecCCCCceEeEEEEEEcCC---CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 69 MIHHNNQTGRWISSFRAIWGWD---DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
.+.... .+++-+++|- .-++++|..+-.|++.|+.+|..-+++.+|..++. ++.|+|...-.|++|+.|
T Consensus 139 ~F~me~------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl--aV~Wsp~~e~vLatgsaD 210 (397)
T KOG4283|consen 139 DFKMEG------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL--AVEWSPSSEWVLATGSAD 210 (397)
T ss_pred EeecCc------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE--EEEeccCceeEEEecCCC
Confidence 665433 3445567763 34678888888999999999999999999988874 789999777789999999
Q ss_pred CeEEEeeC
Q 038702 146 GQVYVWTS 153 (154)
Q Consensus 146 ~~i~~wd~ 153 (154)
|.|++||+
T Consensus 211 g~irlWDi 218 (397)
T KOG4283|consen 211 GAIRLWDI 218 (397)
T ss_pred ceEEEEEe
Confidence 99999997
No 82
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.88 E-value=1e-20 Score=123.32 Aligned_cols=142 Identities=16% Similarity=0.287 Sum_probs=113.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce--eEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA--MIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~--~~~~~~~~~~ 78 (154)
++.|+.|+.|+||.+...... .......|.++|+++++||++.+|+++...+.+.+||..+.+... ...|..
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~--ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta---- 531 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELK--EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA---- 531 (603)
T ss_pred EEEecccceEEEEEecCCccc--ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee----
Confidence 367999999999999875531 134556899999999999999999999999999999999877621 112222
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.+++|+|+..++++|+.|..|.||++..+.....++..|...+ ..+.|- ++..+++.+.|..|++|++
T Consensus 532 --kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gV-n~v~wl--de~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 532 --KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGV-NSVAWL--DESTVVSSGQDANIKVWNV 601 (603)
T ss_pred --eEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCc-eeEEEe--cCceEEeccCcceeEEecc
Confidence 455789999999999999999999999987655455554444443 678887 4689999999999999986
No 83
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=3.6e-21 Score=123.40 Aligned_cols=152 Identities=39% Similarity=0.641 Sum_probs=128.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEec----cccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG----VNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~----~~~~~~~~~~~~~~~ 76 (154)
|+||+.|++++|||++....+....+....|...|.+..|||.+-.|++.+.|..|+|||. ...+....+.|...+
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 6899999999999999866544224566699999999999998777999999999999999 455666778899999
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+.++..+.+.|.|+..+++.|-.-..|-|+|...++.+..+..+....++....|||.+..+++.++..|.|++|-
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 9999999999999999999999999999999999998888877777666677899994433566666889999984
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.1e-21 Score=126.17 Aligned_cols=140 Identities=17% Similarity=0.230 Sum_probs=115.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEee--CCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTS--FDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
||+|+.|+.+.|||...... ...+..|.+.|..++|+| ....||+|+ .|+.|++||..++..........
T Consensus 316 lASGgnDN~~~Iwd~~~~~p----~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs--- 388 (484)
T KOG0305|consen 316 LASGGNDNVVFIWDGLSPEP----KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS--- 388 (484)
T ss_pred eccCCCccceEeccCCCccc----cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC---
Confidence 58999999999999966554 566669999999999999 667888865 59999999999877665544333
Q ss_pred ceEeEEEEEEcCCCcEEEEE--ccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIG--NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~--~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++..+.|++..+.|+++ ..++.|.||+..+.+.+..+.+|...+ ..++++| ++..+++|+.|.++++|++
T Consensus 389 ---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RV--l~la~SP-dg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 389 ---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRV--LYLALSP-DGETIVTGAADETLRFWNL 460 (484)
T ss_pred ---ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCccee--EEEEECC-CCCEEEEecccCcEEeccc
Confidence 35578999988666554 466789999999999999999887664 6899999 8999999999999999986
No 85
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=5.6e-21 Score=115.46 Aligned_cols=147 Identities=14% Similarity=0.128 Sum_probs=114.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN------ 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~------ 74 (154)
|.+|+.|.+..||-...++. .-...+|.+.|.|+..+-+...+++|+.|.++++||++++++........
T Consensus 25 lFscaKD~~~~vw~s~nGer----lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~ 100 (327)
T KOG0643|consen 25 LFSCAKDSTPTVWYSLNGER----LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVD 100 (327)
T ss_pred EEEecCCCCceEEEecCCce----eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEe
Confidence 57899999999999877764 66666999999999999999999999999999999999876543221100
Q ss_pred ----------------C------------------CCce--------EeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc
Q 038702 75 ----------------Q------------------TGRW--------ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR 112 (154)
Q Consensus 75 ----------------~------------------~~~~--------~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 112 (154)
. ...+ -....+.|.|-+++|++|..||.|.+||+++++
T Consensus 101 F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 101 FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc
Confidence 0 0000 012245799999999999999999999999986
Q ss_pred ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 113 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+......+...+ ..++++| +..++++++.|.+-++||.
T Consensus 181 ~~v~s~~~h~~~I-nd~q~s~-d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 181 ELVDSDEEHSSKI-NDLQFSR-DRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred eeeechhhhcccc-ccccccC-CcceEEecccCccceeeec
Confidence 5444332333333 7899999 8899999999999999996
No 86
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.6e-21 Score=131.68 Aligned_cols=140 Identities=19% Similarity=0.258 Sum_probs=116.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++|++|-.|+||+..+.+. ...+.+|.+.|+.+.|++.--+++++|.|.+|+||+..+..+..... |..
T Consensus 66 FVSGGDDykIkVWnYk~rrc----lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH----- 136 (1202)
T KOG0292|consen 66 FVSGGDDYKIKVWNYKTRRC----LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH----- 136 (1202)
T ss_pred EEecCCccEEEEEeccccee----hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce-----
Confidence 57999999999999998876 66677999999999999999999999999999999999988877654 322
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc---------------------c--------eeEEeCCCcCCcceEEE
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR---------------------S--------VATLQSPYISAIPCRFH 130 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~---------------------~--------~~~~~~~~~~~~~~~~~ 130 (154)
.+++..|+|....+++++.|.+||+||+..-+ + .+.+.+|..++. -.+
T Consensus 137 -YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVN--waA 213 (1202)
T KOG0292|consen 137 -YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVN--WAA 213 (1202)
T ss_pred -EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccc--eEE
Confidence 56688999999999999999999999985110 0 123446666654 468
Q ss_pred ecCCCccEEEEEcCCCeEEEeeC
Q 038702 131 AHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 131 ~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
|+| .-.+|++|+.|+.|++|..
T Consensus 214 fhp-TlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 214 FHP-TLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred ecC-CcceEEecCCcceeeEEEe
Confidence 999 6679999999999999975
No 87
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=4.2e-21 Score=121.39 Aligned_cols=145 Identities=19% Similarity=0.312 Sum_probs=116.1
Q ss_pred CeeecCCCcEEEEEccCCCCCC--CCC-ceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDK--PEP-TKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~--~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~ 76 (154)
+|+||+|.+|.||++..+.... ..+ ..+.+|...|-.++|+| ..+.|++++.|.+|.+||+.+++....+.|..
T Consensus 97 IASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd-- 174 (472)
T KOG0303|consen 97 IASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPD-- 174 (472)
T ss_pred eecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCC--
Confidence 5899999999999998754311 112 33449999999999999 45688999999999999999998877666544
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc---CCCeEEEeeC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT---GGGQVYVWTS 153 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~wd~ 153 (154)
.++++.|+.+|.++++.+.|..|||||.++++.+..-.+|... ......|-. ++.++.+|- .++.+-+||.
T Consensus 175 ----~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~-k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 175 ----MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA-KPARAIFLA-SGKIFTTGFSRMSERQIALWDP 248 (472)
T ss_pred ----eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC-CcceeEEec-cCceeeeccccccccceeccCc
Confidence 5678899999999999999999999999999999888655443 335667776 666665553 5788999986
No 88
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=116.49 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=111.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH------- 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~------- 72 (154)
||.|+.||.|.|||+.+.. ..+++ +|..+|++++||++|++|++++.|..+.+||+..+.....+..
T Consensus 38 lAvGc~nG~vvI~D~~T~~-----iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~ 112 (405)
T KOG1273|consen 38 LAVGCANGRVVIYDFDTFR-----IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGA 112 (405)
T ss_pred eeeeccCCcEEEEEccccc-----hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCcccee
Confidence 5889999999999999876 44444 9999999999999999999999999999999988764432211
Q ss_pred ---cCCCCceE-------------------------------eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 73 ---NNQTGRWI-------------------------------SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 73 ---~~~~~~~~-------------------------------~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
.......+ ..-+..|.+.|+++++|...|.+.+++..+.+++..++
T Consensus 113 q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~r 192 (405)
T KOG1273|consen 113 QWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFR 192 (405)
T ss_pred eeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeee
Confidence 00000000 00012377889999999999999999999999988887
Q ss_pred CCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 119 SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
-.....+ -.+.+.. .++.|+.-+.|+.|+.|+++
T Consensus 193 its~~~I-K~I~~s~-~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 193 ITSVQAI-KQIIVSR-KGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred echheee-eEEEEec-cCcEEEEecCCceEEEEehh
Confidence 4432222 3445555 78999999999999999863
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=5.2e-21 Score=129.32 Aligned_cols=134 Identities=18% Similarity=0.311 Sum_probs=108.2
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++|+.|.+|++|+++++. ...+. +|.++|+++..+ +..+++|+.|++|++||+.+.+....+.- +...+
T Consensus 305 ~sgs~D~tVkVW~v~n~~-----~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g---H~~~V 374 (537)
T KOG0274|consen 305 VSGSRDNTVKVWDVTNGA-----CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG---HTGRV 374 (537)
T ss_pred eeccCCceEEEEeccCcc-----eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC---CcceE
Confidence 568899999999999766 56666 599999999996 88999999999999999997777655432 22233
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. ++.+.+. .++++|+.|+.|++||+++. +++.++.+|...+ ..+.. .+++|++++.|++|++||.
T Consensus 375 ~--sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v--~~l~~---~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 375 Y--SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV--SSLLL---RDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred E--EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc--ccccc---ccceeEeccccccEEEeec
Confidence 3 4444544 89999999999999999999 9999998776555 23333 4589999999999999986
No 90
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.8e-21 Score=125.91 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=117.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeec-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|..+|.|.|||....+. ...+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+..... ...+..
T Consensus 232 LavG~~~g~v~iwD~~~~k~----~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~--~~~H~q- 302 (484)
T KOG0305|consen 232 LAVGTSDGTVQIWDVKEQKK----TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST--LQGHRQ- 302 (484)
T ss_pred EEEeecCCeEEEEehhhccc----cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh--hhcccc-
Confidence 57899999999999987764 555555 99999999997 788999999999999999987665441 112222
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc--CCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT--GGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~~wd~ 153 (154)
.++.+.|++++.++++|+.|+.+.|||..+.+++..+..|...+ -+++|+|....+||+|+ .|++|++||.
T Consensus 303 -eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV--KA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 303 -EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV--KALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred -eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceee--eEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 34567899999999999999999999999888888888776665 47899999999999987 7999999996
No 91
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=6.7e-21 Score=128.65 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=123.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce-eEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-MIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-~~~~~~~~~~~ 79 (154)
|+.+--|.+|+||-+.+.+. ...+.||.-||.|+.++|+++.+++|+.|..|++|-+.-+.+-. ++.|..
T Consensus 523 LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD----- 593 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD----- 593 (888)
T ss_pred EEEEeccCeEEEEEecceee----eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC-----
Confidence 45677899999999998876 77788999999999999999999999999999999999887654 444554
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.+.|-|+...+.+++.|+.|+-||-...+.++.+.+|+..+. +++..| +|.++++++.|.+|++|..
T Consensus 594 -Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 594 -SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred -ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheee--eeEEcC-CCCeEEeccCCceeEeeec
Confidence 355788999999999999999999999999999999999988875 678888 8899999999999999974
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-20 Score=112.93 Aligned_cols=148 Identities=20% Similarity=0.258 Sum_probs=108.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|+||+.|++|+|+..+.+.. ......+.+|.++|..++|.. -|.+|+++++||.|.||.-++++-.....+.. +..
T Consensus 26 lATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~-h~~ 103 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA-HSA 103 (299)
T ss_pred eeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-hcc
Confidence 68999999999999987653 111445569999999999966 89999999999999999988875444333332 222
Q ss_pred eEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCc-c--ceeEEeCCCcCCcceEEEecCCC--c-----------cEEE
Q 038702 79 WISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQR-R--SVATLQSPYISAIPCRFHAHPHQ--V-----------GTLA 140 (154)
Q Consensus 79 ~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~l~ 140 (154)
.+. +++|.|. |-.|++++.||.|.|.+.+.. . .-.....|..++ .+++|.|.. + ..|+
T Consensus 104 SVN--sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv--nsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 104 SVN--SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV--NSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred cce--eecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc--ceeeecCcCCCccccccCcccccceee
Confidence 333 4566664 678999999999999988754 1 122233455555 467777741 1 4699
Q ss_pred EEcCCCeEEEeeCC
Q 038702 141 GATGGGQVYVWTSD 154 (154)
Q Consensus 141 ~~~~d~~i~~wd~~ 154 (154)
+|+.|..|++|+.+
T Consensus 180 SgGcDn~VkiW~~~ 193 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFD 193 (299)
T ss_pred ccCCccceeeeecC
Confidence 99999999999863
No 93
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=116.37 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=112.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
+|++...|.|++||..+++. ...+.+++..+..++|.. .+..+.+++.||+|++||++.......+......+.
T Consensus 43 vav~lSngsv~lyd~~tg~~----l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQL----LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred EEEEecCCeEEEEeccchhh----hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 46788899999999998775 566669999999999977 678899999999999999999877655544333322
Q ss_pred eEeEEEEEEcCCCcEEEEEc----cCCeEEEecCCCccc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGN----MTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~----~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
... ++.-+..++.+++|. .+-.|.+||+|..+. +..+...|...+ +.++|+|.++++|++|+.||.|.++|+
T Consensus 119 ~f~--~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDV-T~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 119 PFI--CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDV-TQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred cce--EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcc-eeEEecCCCCCeEEeecccceEEeeec
Confidence 222 223334567777775 456799999998766 666654444444 689999999999999999999999997
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=7.2e-20 Score=110.37 Aligned_cols=140 Identities=22% Similarity=0.302 Sum_probs=113.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++++.|.+|++||++..++ .......+.=.-+.|+|+|++++.++.|..|...|.++.+..........
T Consensus 80 ~atas~dk~ir~wd~r~~k~-----~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e----- 149 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKC-----TARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE----- 149 (313)
T ss_pred eEEecCCceEEEEEeccCcE-----EEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-----
Confidence 57899999999999999874 44444444445678999999999999999999999998776654433222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.-.+.|+.++.+++.....|.|.|......+++..++.|.... .++.|+| ++++|++|+.|-.+.+||++
T Consensus 150 -~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC--icI~f~p-~GryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 150 -VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC--ICIEFDP-DGRYFATGSADALVSLWDVD 219 (313)
T ss_pred -eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce--EEEEECC-CCceEeeccccceeeccChh
Confidence 1245678777777776778999999999999999999887555 5789999 99999999999999999985
No 95
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=2.9e-20 Score=125.68 Aligned_cols=146 Identities=16% Similarity=0.219 Sum_probs=113.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc-----ce--eEeecC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-----TA--MIHHNN 74 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-----~~--~~~~~~ 74 (154)
++|...|.+.++|+.+... ......|.+.|.+++.+|++..+++|+.|.+|++||..-... .. .+.+..
T Consensus 428 v~G~k~Gel~vfdlaS~~l----~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASL----VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred EEeccCCceEEEEeehhhh----hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 5667777777777766553 333448999999999999999999999999999999753211 11 111211
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.-.-.-.++++.++||+++|+.+-.|+++++|-+.+.+....+.+|.-++. ++..+| ++.+++||+.|..|++|-+|
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~--smDIS~-DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL--SMDISP-DSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccccee--EEeccC-CcCeEEeccCCCceEEeccc
Confidence 111112356788999999999999999999999999999999999988875 678888 88999999999999999764
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5.7e-20 Score=124.83 Aligned_cols=146 Identities=12% Similarity=0.255 Sum_probs=115.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe---e--cCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH---H--NNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~---~--~~~ 75 (154)
+++|+-|+.||||++...+ ......-..-|++++|.|+|+..+.|+.+|.+++|+....+...... + ...
T Consensus 425 FiSGSLD~KvRiWsI~d~~-----Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDKK-----VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred EeecccccceEEeecCcCe-----eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 5899999999999998765 34444556899999999999999999999999999998766543221 1 111
Q ss_pred CCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 76 TGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+..+.. +.|.|. ...+++.+.|..|||||.++.+++..+++.+.........|.. ++.+|++++.|..|++|+.+
T Consensus 500 ~~~rITG--~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 500 QGKRITG--LQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cCceeee--eEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence 2223443 455553 4467777889999999999999999999877766657788888 99999999999999999863
No 97
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.1e-20 Score=118.24 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=99.5
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.|.+.|..+.||++|++||+++.|.+..+|++..............+.. .+.-+.|+||.++|++++.|..+++||+.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~--~V~yi~wSPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ--PVSYIMWSPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccC--ceEEEEECCCCCeEEecCchHheeeccCC
Confidence 7999999999999999999999999999999877655433332222222 23356899999999999999999999999
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++.+...+..... ....+.+|.| ++..+++|+.|+++..||+|
T Consensus 300 tgd~~~~y~~~~~-~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 300 TGDLRHLYPSGLG-FSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred cchhhhhcccCcC-CCcceeEEcc-CCceeEecCCCCcEEEecCC
Confidence 9999888774433 3336789999 88999999999999999985
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=9.9e-20 Score=121.33 Aligned_cols=144 Identities=13% Similarity=0.233 Sum_probs=116.2
Q ss_pred CeeecCCCcEEEEEccCCCC------CCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-ee
Q 038702 1 MATSSTDGTACIWDLRSMAT------DKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HH 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~------~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~ 72 (154)
+|+|+-|+.|.+||+..+.. .......+. ++..+|++++.++.|..+++|+..+-+++||.++.+....+ +|
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH 212 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH 212 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc
Confidence 47899999999999986622 111112223 78999999999999999999999999999999998766444 34
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.. .+++ +..+++|..+++++.||+|++||+.+.+++.++..|..++ +++..+| .=..+.+|+.||.|..=|
T Consensus 213 Td----NVr~--ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V--WaL~~~~-sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 213 TD----NVRV--LLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV--WALQSSP-SFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred cc----ceEE--EEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce--EEEeeCC-CcceEEecCCCCcEEecc
Confidence 33 3454 3568999999999999999999999999999999887774 5777777 667899999999998765
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 284 l 284 (735)
T KOG0308|consen 284 L 284 (735)
T ss_pred c
Confidence 4
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=4.9e-20 Score=113.01 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=89.1
Q ss_pred cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 30 SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
.-.+.|.+|+||| ...++++++.|++||+|+++........... .+ ...+++++|+.+|..+++|+.|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-~~--~~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-SH--DGPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-cc--CCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 4567899999999 5567779999999999999875333221111 11 124568899999999999999999999999
Q ss_pred CCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 109 AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+++ ...+..|...+..+.+.-.+ ....|++|+.|.+|++||.
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~-~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGM-NYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCC-CcceeEecccccceeeccc
Confidence 9995 45566676666544333233 3458999999999999996
No 100
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=113.94 Aligned_cols=145 Identities=20% Similarity=0.208 Sum_probs=103.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++||.||+|+|||++.+..+. ......|.+.|+.|.|+..-.+|++|+.||+++|||++..+..........+...+
T Consensus 273 faScS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred EEeeecCceEEEEEecCCCccc--eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 5899999999999999874421 44446899999999999988899999999999999999866553332222233333
Q ss_pred eEEEEEEcCC-CcEEEEEccCCeEEEecCCCccc--------ee--------EEeCCCcCCcceEEEecCCCccEEEEEc
Q 038702 81 SSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRS--------VA--------TLQSPYISAIPCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 81 ~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (154)
.++.|+|. ...+++++.|..|.+||+.--.- .. .+.-|....-.-.+.|++..+.++++.+
T Consensus 351 --tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 351 --TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred --eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 36789985 56888899999999999862110 00 1111211111235789998888999999
Q ss_pred CCCeEE
Q 038702 144 GGGQVY 149 (154)
Q Consensus 144 ~d~~i~ 149 (154)
.||--.
T Consensus 429 ~dGfnV 434 (440)
T KOG0302|consen 429 IDGFNV 434 (440)
T ss_pred ccceeE
Confidence 998643
No 101
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=4.6e-20 Score=120.23 Aligned_cols=145 Identities=16% Similarity=0.164 Sum_probs=113.4
Q ss_pred eeecCCCcEEEEEccCCCCCCCC-CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPE-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
.||+ .|-|+|||+.....+.+. .+........|+++...|+|+.|++|++-.++.|||+..........- .....
T Consensus 435 yTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikael---tssap 510 (705)
T KOG0639|consen 435 YTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL---TSSAP 510 (705)
T ss_pred EecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhc---CCcch
Confidence 3444 477999999765432221 222234667899999999999999999999999999987655432221 11122
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.++.+||.+..++++.||+|+|||+.....++.+++|..+.. ++..++ ++..|-+|+-|.+|+.||+
T Consensus 511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas--cIdis~-dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS--CIDISK-DGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce--eEEecC-CCceeecCCCccceeehhh
Confidence 455678899999999999999999999999999999999988875 566777 7899999999999999997
No 102
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2.8e-20 Score=116.56 Aligned_cols=141 Identities=11% Similarity=0.207 Sum_probs=109.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|..|+.|.+||++...+ .+..--...-..|+|+|.+-.|.+|++|..+..+|++....+...... +..
T Consensus 203 Las~~sDrsIvLyD~R~~~P-----l~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d----hvs 273 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASP-----LKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD----HVS 273 (433)
T ss_pred eeeeccCCceEEEecccCCc-----cceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc----cce
Confidence 57788999999999998773 433344555678999998889999999999999999987665433221 112
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.++.+.|+|.|+-+++|+.|.+||||..+.+..-......... ...++.|+. +.+++++|+.|+.|++|.
T Consensus 274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq-~V~~Vk~S~-Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ-HVFCVKYSM-DSKYIISGSDDGNVRLWK 343 (433)
T ss_pred eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh-eeeEEEEec-cccEEEecCCCcceeeee
Confidence 5678899999999999999999999999877654443322222 225788888 889999999999999996
No 103
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.3e-19 Score=114.11 Aligned_cols=144 Identities=16% Similarity=0.211 Sum_probs=115.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc------cceeEeecCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE------NTAMIHHNNQ 75 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~------~~~~~~~~~~ 75 (154)
+.|...|.+++|.+.++.. ...+.+|-..|+|+.|+-||.+|++|+.||.|.+|.+...- .+..+.+...
T Consensus 97 ~ag~i~g~lYlWelssG~L----L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGIL----LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred EeecccCcEEEEEeccccH----HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 4455899999999999884 33344999999999999999999999999999999875421 2344445556
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+...+..+.+.+.+...++++++.|.++++||+..+..+.++..+ ....+++.+| .+..+..|+.+|.|.+.++
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp---~si~av~lDp-ae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP---SSIKAVALDP-AERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC---CcceeEEEcc-cccEEEecCCcceEEeeeh
Confidence 676777777766766789999999999999999999998887633 2336789999 7788999999999988664
No 104
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.5e-20 Score=126.45 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=117.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~ 79 (154)
+++|+.|..+-+|.+..... ...+.+|..+|-++.|++...++++|+.+|+|++||++.......+ +|.
T Consensus 43 ~~~Gg~~~k~~L~~i~kp~~----i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~------ 112 (825)
T KOG0267|consen 43 LVTGGEDEKVNLWAIGKPNA----ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL------ 112 (825)
T ss_pred eccCCCceeeccccccCCch----hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc------
Confidence 46788999999999876554 5556799999999999999999999999999999999976654322 232
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+.++.|+|-+.|.+.|+.|+.+.+||.+-..+.+.+.+|. .++ -.+.+.| ++.+++.|+.|..+++||+
T Consensus 113 ~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~-~vv-~~l~lsP-~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 113 LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT-RVV-DVLRLSP-DGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred cCcceeeeccceEEeccccccccceehhhhccCceeeecCCc-cee-EEEeecC-CCceeeccCCcceeeeecc
Confidence 245577899999999999999999999999888999998844 333 4678999 8899999999999999997
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=6.9e-19 Score=113.65 Aligned_cols=137 Identities=20% Similarity=0.304 Sum_probs=107.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++||++||+|++||++.... ....+.|..+|-.+.+-|.|.++++++.. .+++||+.++........ .+...+
T Consensus 169 vvtGsYDg~vrl~DtR~~~~----~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~--~H~KtV 241 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTS----RVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMF--NHNKTV 241 (487)
T ss_pred EEecCCCceEEEEEeccCCc----eeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhh--cccceE
Confidence 47999999999999998753 55666999999999999999999998654 699999996655432211 122233
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
. ++++..++..|++++-|+.+++||+.+.+.+..+.- .+.+ .+++.+| +++.++.|..+|.+.+
T Consensus 242 T--cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--~~pv-Lsiavs~-dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 242 T--CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--PGPV-LSIAVSP-DDQTVVIGMSNGLVSI 305 (487)
T ss_pred E--EEEeecCCceEeecccccceEEEEccceEEEEeeec--ccce-eeEEecC-CCceEEEecccceeee
Confidence 4 556777899999999999999999998888888762 2233 6889999 7789999999998765
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.9e-18 Score=110.34 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=111.3
Q ss_pred CeeecCCCcEEEEEccCC----CCCCCCCceee-cccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEeec
Q 038702 1 MATSSTDGTACIWDLRSM----ATDKPEPTKVL-SHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~----~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~ 73 (154)
|+||+.||.|.+|.+... ....+.+...+ .|+-+|+++...+. ..++++++.|.++++||+..+.....+..+
T Consensus 138 iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 138 IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC
Confidence 579999999999997532 11122344444 89999999999875 358999999999999999998776555433
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc----------------cceeEEeCCCcCCcceEEEecCCCcc
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR----------------RSVATLQSPYISAIPCRFHAHPHQVG 137 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (154)
. ...+++.+|-++.++.|+.+|.|.+.++... ..+..+.+|.......+++.+- ++.
T Consensus 218 ~------si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-Dgt 290 (476)
T KOG0646|consen 218 S------SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGT 290 (476)
T ss_pred C------cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-Ccc
Confidence 3 2235678999999999999999988776522 2345566776633346778887 889
Q ss_pred EEEEEcCCCeEEEeeCC
Q 038702 138 TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~~ 154 (154)
+|++|+.||++++||+.
T Consensus 291 lLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 291 LLLSGDEDGKVCVWDIY 307 (476)
T ss_pred EEEeeCCCCCEEEEecc
Confidence 99999999999999973
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2e-18 Score=106.56 Aligned_cols=108 Identities=21% Similarity=0.219 Sum_probs=88.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC--EEEEeeCCCeEEEEeccccccceeEe-ecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS--SLATTSFDDTIGIWSGVNFENTAMIH-HNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~ 77 (154)
+++|+.|-+|+|||++.... ...+..|.+.|+++.|.+... .|++|+.||.|.+|+.........+. |..
T Consensus 56 ~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~--- 128 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG--- 128 (362)
T ss_pred EeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc---
Confidence 57899999999999998765 666779999999999998665 89999999999999998876554443 222
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
.+. .++.+|.+++.++.+.|+.+++||+-.|+.-..++
T Consensus 129 -~Vt--~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 129 -QVT--DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred -ccc--eeEecCCCceEEEEcCCceeeeehhhcCccceeec
Confidence 233 56789999999999999999999998776554444
No 108
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.2e-18 Score=107.04 Aligned_cols=135 Identities=16% Similarity=0.260 Sum_probs=107.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+++++||++++||+.... ....+.|..++.+++|.+ ...+++|+.||.|+.+|+.+......-.|... +
T Consensus 28 LLvssWDgslrlYdv~~~~-----l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~----i 97 (323)
T KOG1036|consen 28 LLVSSWDGSLRLYDVPANS-----LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEG----I 97 (323)
T ss_pred EEEEeccCcEEEEeccchh-----hhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceeeccCCCc----e
Confidence 5678899999999998764 555668999999999987 56789999999999999999887766655442 3
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. ++.+.+....+++|+.|++|++||.+.......+.... .+ .++.. .++.|+.|+.|..+.+||+
T Consensus 98 ~--ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kV--y~~~v---~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 98 R--CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KV--YCMDV---SGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred E--EEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eE--EEEec---cCCEEEEeecCceEEEEEc
Confidence 3 45677888899999999999999999865555554322 22 23333 5688999999999999998
No 109
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=9.7e-19 Score=107.09 Aligned_cols=149 Identities=19% Similarity=0.316 Sum_probs=116.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+.++|-|.+..|||++.+.. .....++..|..+|..++|...+ +.|++.+.||+++++|++..+...++........
T Consensus 166 igtSSiDTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~- 243 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST- 243 (364)
T ss_pred eEeecccCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC-
Confidence 45788999999999988621 11144566999999999999854 5889999999999999999887766643333222
Q ss_pred EeEEEEEEcCC-CcEEEEEccCC-eEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWD-DSCIFIGNMTR-TVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~-~~~l~~~~~d~-~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..++++|++. .+++++-..|+ .|.|.|++.. .++..+++|...+ ..++|.|..+..|++++.|..+-+||++
T Consensus 244 -pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~V--NgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 244 -PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASV--NGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred -cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccc--cceEecCCCCceeeecCCcceEEEEecc
Confidence 2346788874 56888777665 6999999954 5778888776665 5789999888999999999999999985
No 110
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=109.81 Aligned_cols=145 Identities=18% Similarity=0.188 Sum_probs=111.3
Q ss_pred CeeecCCCcEEEEEccCCCCC------CCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc----eeE
Q 038702 1 MATSSTDGTACIWDLRSMATD------KPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT----AMI 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~----~~~ 70 (154)
+++|.++|.|.+||+.++... .........|..+|.++.+.+.-+.=++|+.+..+..|++...... ...
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 478999999999999886320 0112233479999999999987777788999999999998764221 111
Q ss_pred eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 71 HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.-.++. +. .+...||++.+++++.|+.||+|..++.+++..++-|...+ .+++|+| +.++++.++.|++|.+
T Consensus 248 ~lknpG---v~--gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv--n~vAfsp-d~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 248 TLKNPG---VS--GVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV--NAVAFSP-DCELMAAASKDARISL 319 (323)
T ss_pred EecCCC---cc--ceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce--eEEEeCC-CCchhhhccCCceEEe
Confidence 111111 11 23457899999999999999999999999999998777444 6899999 7799999999999999
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
|++
T Consensus 320 WkL 322 (323)
T KOG0322|consen 320 WKL 322 (323)
T ss_pred eec
Confidence 986
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=110.74 Aligned_cols=143 Identities=16% Similarity=0.166 Sum_probs=118.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++|+.|..+.++|...++. ...+.||.-.|+.+.++|+...+++++.|..|++|............ |.. .
T Consensus 234 ilTGG~d~~av~~d~~s~q~----l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~----~ 305 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPSNQI----LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEE----P 305 (506)
T ss_pred ceecCCCCceEEEecchhhh----hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccc----c
Confidence 46899999999999988774 44455999999999999999999999999999999988766554333 322 2
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+. .+..+|.|.||++++.|+...+.|++++..+.........+-..+.+||| ++.+|.+|..|+.+++||+.
T Consensus 306 V~--~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 306 VT--GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred ce--eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcC
Confidence 33 34568999999999999999999999999887776433434457889999 99999999999999999973
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.5e-19 Score=106.56 Aligned_cols=147 Identities=19% Similarity=0.208 Sum_probs=105.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
||+++.||.|.||.-..+. ..+......|...|++++|.|. |-.|+.++.||.|.+.+.+.............+.
T Consensus 73 LAScsYDgkVIiWke~~g~--w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~- 149 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGR--WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE- 149 (299)
T ss_pred eeEeecCceEEEEecCCCc--hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc-
Confidence 6899999999999987653 2223444589999999999994 5689999999999999987652211111111111
Q ss_pred eEeEEEEEEcCC---C-----------cEEEEEccCCeEEEecCCCc--cceeEEeCCCcCCcceEEEecCCCc---cEE
Q 038702 79 WISSFRAIWGWD---D-----------SCIFIGNMTRTVEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQV---GTL 139 (154)
Q Consensus 79 ~~~~~~~~~~~~---~-----------~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~l 139 (154)
+-+-+++|.|- | +.|++|+.|+.|+||+...+ +...++.+|...+. .++|.|..+ .+|
T Consensus 150 -~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR--DVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 150 -IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR--DVAWAPSVGLPKSTI 226 (299)
T ss_pred -cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh--hhhhccccCCCceee
Confidence 11224566664 3 57999999999999998865 44556777776664 678888532 479
Q ss_pred EEEcCCCeEEEeeC
Q 038702 140 AGATGGGQVYVWTS 153 (154)
Q Consensus 140 ~~~~~d~~i~~wd~ 153 (154)
+++++||++.||..
T Consensus 227 AS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTK 240 (299)
T ss_pred EEecCCCcEEEEEe
Confidence 99999999999964
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.1e-18 Score=103.43 Aligned_cols=134 Identities=15% Similarity=0.184 Sum_probs=106.7
Q ss_pred CCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
.|.+||.-++.+++ .++.+ ||...|.+|+.+|-+..|++++.|++|++||++..++......... . .
T Consensus 78 ~d~tIryLsl~dNk-----ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~------p-i 145 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNK-----YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR------P-I 145 (311)
T ss_pred CCCceEEEEeecCc-----eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC------c-c
Confidence 37899999999887 45555 9999999999999999999999999999999998777665543332 1 3
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCc--cceeEEeCC-CcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQR--RSVATLQSP-YISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
++|.|+|-++|++...+.|++||++.. .+..++.-. ........+.|+| +|.+++.++..+.+++.|
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLD 215 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEE
Confidence 579999999999998889999999953 455555432 2233336889999 889998888888888876
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=9.7e-19 Score=108.43 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=82.3
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC-
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA- 109 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~- 109 (154)
|.-.+..+-....+.++++++.|..|.+|+++ ++.+..+..... ....++.+|+|+++++++..--|++|.+-
T Consensus 186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~-----~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS-----SNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred cccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc-----cccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 34444455555566677788888888888887 333333322211 22356789999999999999999999864
Q ss_pred --Cc-----cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 110 --QR-----RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 110 --~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.| ..+..+++|...+ ..++|+| ++..+++.+.||++++||.+
T Consensus 260 ~kdG~fqev~rvf~LkGH~saV--~~~aFsn-~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 260 TKDGTFQEVKRVFSLKGHQSAV--LAAAFSN-SSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccCcchhhhhhhheeccchhhe--eeeeeCC-CcceeEEEecCCcEEEeecc
Confidence 22 2456677777666 4789999 88999999999999999975
No 115
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.2e-18 Score=100.43 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=107.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee---c-----ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL---S-----HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~---~-----~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
+++|+.|.+|++||++-+.. .... - ..+.|.+++..|.|++|++|-.|.++.+||++.++....+.
T Consensus 197 ~~sgsqdktirfwdlrv~~~-----v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~- 270 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSC-----VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH- 270 (350)
T ss_pred EEccCCCceEEEEeeeccce-----eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-
Confidence 57899999999999987553 2222 1 23679999999999999999999999999999887765443
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc---c-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR---R-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
++...++ ++.|+|...|+++++.|..|++-|+... + ++...-.|.... ..+.|+| ..--+++.+.|.++
T Consensus 271 --phsadir--~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~--i~~rwh~-~d~sfisssadkt~ 343 (350)
T KOG0641|consen 271 --PHSADIR--CVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKA--IQCRWHP-QDFSFISSSADKTA 343 (350)
T ss_pred --CCcccee--EEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCce--EEEEecC-ccceeeeccCcceE
Confidence 2222344 5689999999999999999999998632 2 222333344444 4789999 65778899999999
Q ss_pred EEeeC
Q 038702 149 YVWTS 153 (154)
Q Consensus 149 ~~wd~ 153 (154)
.+|-+
T Consensus 344 tlwa~ 348 (350)
T KOG0641|consen 344 TLWAL 348 (350)
T ss_pred EEecc
Confidence 99975
No 116
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=3.2e-19 Score=110.74 Aligned_cols=146 Identities=25% Similarity=0.269 Sum_probs=112.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc----cccccee-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV----NFENTAM------- 69 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~----~~~~~~~------- 69 (154)
+.+++.|.+.+||.++++.+ .....+|.+.|.+++|++.+.++++++.|++.+||... .++....
T Consensus 163 ~gtASADhTA~iWs~Esg~C----L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESGAC----LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred eeecccccceeEEeeccccc----eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 35789999999999999986 66666999999999999999999999999999999721 1110000
Q ss_pred -Eeec-----------------------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCc
Q 038702 70 -IHHN-----------------------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAI 125 (154)
Q Consensus 70 -~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 125 (154)
..+. ...++...+..+.|-..|+.+++++.|.+..+||+++++.+..+.+|.....
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT 318 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence 0000 0011111223445667889999999999999999999999999998876653
Q ss_pred ceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 126 PCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++-+| ...++++.+.|-+.++||.
T Consensus 319 --HcstHp-tQrLVvTsSrDtTFRLWDF 343 (481)
T KOG0300|consen 319 --HCSTHP-TQRLVVTSSRDTTFRLWDF 343 (481)
T ss_pred --ccccCC-cceEEEEeccCceeEeccc
Confidence 567888 6688999999999999996
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=5.1e-19 Score=113.71 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=114.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++|..-|+|-+||+...+........+..|..+|.+|.|+| +...+++.+.||++++-|++......++... ...
T Consensus 203 va~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~---~d~ 279 (498)
T KOG4328|consen 203 VAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD---TDN 279 (498)
T ss_pred EEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC---ccc
Confidence 478999999999999755544444555569999999999999 5679999999999999999887655444332 112
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.....+.|+.+...++++..=|...+||++++.. ...+..|...+ ..++++|..+.+|++++.|++.+|||+
T Consensus 280 ~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI--~sv~~NP~~p~~laT~s~D~T~kIWD~ 352 (498)
T KOG4328|consen 280 IWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI--TSVALNPVCPWFLATASLDQTAKIWDL 352 (498)
T ss_pred eeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc--ceeecCCCCchheeecccCcceeeeeh
Confidence 2333556777878888888778999999998765 44444455433 689999999999999999999999997
No 118
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.80 E-value=4.8e-19 Score=115.58 Aligned_cols=144 Identities=13% Similarity=0.183 Sum_probs=111.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE---------e-
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------H- 71 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------~- 71 (154)
++|..||.|.|||+..... ...+.+|.+.+.||.++++|..|-+|+-|++|+.||++....+... .
T Consensus 525 FsccsdGnI~vwDLhnq~~----VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~ 600 (705)
T KOG0639|consen 525 FSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGY 600 (705)
T ss_pred eeeccCCcEEEEEccccee----eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheeccc
Confidence 5788999999999998764 5566699999999999999999999999999999999875432110 0
Q ss_pred -------------------e-c-----CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcc
Q 038702 72 -------------------H-N-----NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIP 126 (154)
Q Consensus 72 -------------------~-~-----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 126 (154)
+ . ..+-+...++++.|++.|+++++.+.|+.+..|...-|..+...+ ....+.+
T Consensus 601 cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVls 679 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLS 679 (705)
T ss_pred CCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCccee
Confidence 0 0 001112345678999999999999999999999999888887766 2344544
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+++ +. +..++++|+.|....+|.+
T Consensus 680 CDI--S~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 680 CDI--SF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eee--cc-CceEEEecCCCcceEEEEE
Confidence 444 44 5689999999998888864
No 119
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=1.6e-18 Score=120.73 Aligned_cols=147 Identities=17% Similarity=0.252 Sum_probs=108.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------- 70 (154)
|++++.|++|.+|+..+.+. ...+.+|.+.|-.+.|.|-|++|++-+.|+++++|+..+......+
T Consensus 144 lvS~s~DnsViiwn~~tF~~----~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFEL----LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred EEEecccceEEEEcccccee----eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 58899999999999998853 4555699999999999999999999999999999996542211000
Q ss_pred ----e-ecCCC--------------------------------CceEeEEEEEEcCC-------------Cc----EEEE
Q 038702 71 ----H-HNNQT--------------------------------GRWISSFRAIWGWD-------------DS----CIFI 96 (154)
Q Consensus 71 ----~-~~~~~--------------------------------~~~~~~~~~~~~~~-------------~~----~l~~ 96 (154)
+ ...+. ++...+-.++|+|. +. .+++
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 0 00000 00001113467661 11 6788
Q ss_pred EccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 97 GNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 97 ~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
|+.|+.|-||.....+++.....-....+ .+++|+| +|..|..++.||+|.+...
T Consensus 300 gSqDrSlSVW~T~~~RPl~vi~~lf~~SI-~DmsWsp-dG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPLFVIHNLFNKSI-VDMSWSP-DGFSLFACSLDGTVALIHF 354 (942)
T ss_pred ecCCccEEEEecCCCCchhhhhhhhcCce-eeeeEcC-CCCeEEEEecCCeEEEEEc
Confidence 99999999999988888877764444444 7999999 8899999999999998765
No 120
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.80 E-value=4.9e-19 Score=112.55 Aligned_cols=147 Identities=19% Similarity=0.252 Sum_probs=106.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-----------
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI----------- 70 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~----------- 70 (154)
++++.|+.+++|++..... ...+.+|.+.|+++.|......+++|+.|.++++||+....+....
T Consensus 235 iAas~d~~~r~Wnvd~~r~----~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~ 310 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRL----RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC 310 (459)
T ss_pred EeecCCCceeeeeccchhh----hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEe
Confidence 6789999999999988774 4455599999999999887777999999999999999865432111
Q ss_pred -------eecCC--------CCceE-------eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCC--cCCcc
Q 038702 71 -------HHNNQ--------TGRWI-------SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY--ISAIP 126 (154)
Q Consensus 71 -------~~~~~--------~~~~~-------~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~--~~~~~ 126 (154)
.|... .+... .+.++..++++..+++++.|.++.+.|+++.+....+.... ...-.
T Consensus 311 ~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 311 SISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred cceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 11110 00000 11134556778888888888888888888887776665321 11223
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+.|+| ++.|+++|+.||.|+||++
T Consensus 391 trvvfSp-d~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 391 TRVVFSP-DGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred ceeEECC-CCceeeeccCCCcEEEEEc
Confidence 5788999 8899999999999999986
No 121
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=1.6e-18 Score=111.39 Aligned_cols=138 Identities=20% Similarity=0.270 Sum_probs=103.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-eeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-AMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~~~~ 79 (154)
|++|+.|..|.||+.++.+. ...+.+|.+.|.+++|-...+.+++++.|+++++|++...... ..++|+..
T Consensus 217 latgg~d~~v~Iw~~~t~eh----v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~---- 288 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLEH----VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG---- 288 (479)
T ss_pred EEecCCCceEEEecCcccch----hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc----
Confidence 58899999999999999874 3445699999999999999999999999999999999877655 34455442
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+. .+.-...++.+-+|+.|+++++|++... ....+.++....- ++++- +...|++|+.+|.|.+|++
T Consensus 289 v~--~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sid--cv~~I--n~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 289 VL--GIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSID--CVAFI--NDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred ee--eechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCee--eEEEe--cccceeeccCCceEEEeee
Confidence 22 2222334667777779999999999433 3334555544444 34444 4689999999999999986
No 122
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=8.1e-19 Score=111.28 Aligned_cols=147 Identities=17% Similarity=0.208 Sum_probs=110.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCC----CCc-eeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKP----EPT-KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE---------- 65 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~----~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~---------- 65 (154)
++||+.|..|++|-+........ ... .+..|...|+++.|+|+|+.|++|+.+|.+.+|......
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhh
Confidence 58999999999999876543221 111 223799999999999999999999999999999876211
Q ss_pred ---cceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE
Q 038702 66 ---NTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 66 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (154)
..........+. --++.++|+|++.++++++.|+.+++||+..|+.+..+..|...+ ..++|.| .++++++-
T Consensus 109 ~ke~w~v~k~lr~h~--~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yv--qgvawDp-l~qyv~s~ 183 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHR--DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYV--QGVAWDP-LNQYVASK 183 (434)
T ss_pred CccceEEEEEecccc--cchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccc--ceeecch-hhhhhhhh
Confidence 111111111111 124467899999999999999999999999999999988776665 4789999 77899988
Q ss_pred cCCCeEEEee
Q 038702 143 TGGGQVYVWT 152 (154)
Q Consensus 143 ~~d~~i~~wd 152 (154)
+.|...+.+.
T Consensus 184 s~dr~~~~~~ 193 (434)
T KOG1009|consen 184 SSDRHPEGFS 193 (434)
T ss_pred ccCcccceee
Confidence 8888655544
No 123
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.80 E-value=1.8e-18 Score=104.09 Aligned_cols=140 Identities=12% Similarity=0.194 Sum_probs=112.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+||+.+..+||+|++..+. .+..+.+|.+.|..+.|....+.+++++.|++|++||.+++.....+....+.
T Consensus 115 lltgg~ekllrvfdln~p~A---pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~V---- 187 (334)
T KOG0278|consen 115 LLTGGQEKLLRVFDLNRPKA---PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPV---- 187 (334)
T ss_pred hhccchHHHhhhhhccCCCC---CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCC----
Confidence 57899999999999987654 14555699999999999999999999999999999999999887666544331
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
-++..+++|++|.++ ..+.|.+||..+...++..+.+. ...+...+| +...++.|+.|..++.||.+
T Consensus 188 --tSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~---nV~SASL~P-~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 188 --TSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPC---NVESASLHP-KKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred --cceeeccCCCEEEEe-cCceeEEeccccccceeeccCcc---ccccccccC-CCceEEecCcceEEEEEecc
Confidence 256778899887654 46789999999999888876442 234667899 56899999999999999863
No 124
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=1.6e-18 Score=109.91 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=95.8
Q ss_pred ceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEe--ecCCCCceEeEEEEEEcCC-CcEEEEEccCC
Q 038702 26 TKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIH--HNNQTGRWISSFRAIWGWD-DSCIFIGNMTR 101 (154)
Q Consensus 26 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~ 101 (154)
..+.+|+++|..++|+| +.+.+++|+.|.+|.+|.+.......... .....++.-.+-.++|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 33458999999999999 67789999999999999997654332111 0001111123345789997 46889999999
Q ss_pred eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 102 TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 102 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+|.+|++.+++.+.++. |.. .+.++.|+- ++.+|++.+.|.+|++||.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd--~i~S~sfn~-dGs~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPD--MVYSMSFNR-DGSLLCTTCKDKKVRVIDP 202 (472)
T ss_pred eEEEEeccCCceeeecC-CCC--eEEEEEecc-CCceeeeecccceeEEEcC
Confidence 99999999999988887 433 336889998 8999999999999999996
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.3e-17 Score=110.50 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=112.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++.+.+|+|.-||+.+.+. ........+.|.+++.+|.+..++.|+.||.+...+...........-..+. .
T Consensus 83 LFS~g~sg~i~EwDl~~lk~----~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~---s 155 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQ----KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK---S 155 (691)
T ss_pred EEeecCCceEEEEecccCce----eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc---c
Confidence 46788899999999998875 5555577889999999999999999999997766666555443322222222 2
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe-----CCC-cCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ-----SPY-ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+.+++.|+|++..+++|+.||.|++||...+..+.... ... ...+.+++.+-. ...|++|..-|+|.+||.+
T Consensus 156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSI 233 (691)
T ss_pred eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEccc
Confidence 67789999999999999999999999999988776222 112 445557777764 4789999999999999963
No 126
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=3.4e-18 Score=109.93 Aligned_cols=141 Identities=13% Similarity=0.178 Sum_probs=109.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|.+++.|++|++|+++.... ...+++|.+.|.+|....-++.+-+|+.|+++++|++....+.....+.. .+
T Consensus 259 lys~s~Drsvkvw~~~~~s~----vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~----si 330 (479)
T KOG0299|consen 259 LYSASADRSVKVWSIDQLSY----VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEG----SI 330 (479)
T ss_pred eeeeecCCceEEEehhHhHH----HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCC----Ce
Confidence 57899999999999998774 55667999999999998888888888899999999995544444333321 12
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC----------CcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS----------AIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
. +++|- +...+++|+.+|.|.+|++...+++.+....|.- ....+++..| ..+++++|+.+|.|++
T Consensus 331 d--cv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrL 406 (479)
T KOG0299|consen 331 D--CVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRL 406 (479)
T ss_pred e--eEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEE
Confidence 2 23333 6678899999999999999999888777632211 1346788888 7899999999999999
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
|-+
T Consensus 407 W~i 409 (479)
T KOG0299|consen 407 WKI 409 (479)
T ss_pred EEe
Confidence 975
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=7e-18 Score=103.73 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=109.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC---CCEEEEeeCCCeEEEEeccccccceeEe-ecCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS---GSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQT 76 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~ 76 (154)
+.+++.|.+++|||..+.+ ....+...+.|++-+++|- -.++++|..+-.|++.|+.++.....+. |..
T Consensus 117 FtssSFDhtlKVWDtnTlQ-----~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-- 189 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQ-----EAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-- 189 (397)
T ss_pred eecccccceEEEeecccce-----eeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC--
Confidence 3578999999999998876 4556677889999999993 3477888889999999999988765543 433
Q ss_pred CceEeEEEEEEcCCCc-EEEEEccCCeEEEecCCCc-cceeEEeCCCc------------CCcceEEEecCCCccEEEEE
Q 038702 77 GRWISSFRAIWGWDDS-CIFIGNMTRTVEVISPAQR-RSVATLQSPYI------------SAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~ 142 (154)
.++.+.|+|... .|++|+.||.+|+||++.. .++..+..|.. ......++|.. ++.+++++
T Consensus 190 ----~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~ 264 (397)
T KOG4283|consen 190 ----GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASC 264 (397)
T ss_pred ----ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhc
Confidence 467889999876 5789999999999999854 44444443221 11125678888 88999999
Q ss_pred cCCCeEEEeeC
Q 038702 143 TGGGQVYVWTS 153 (154)
Q Consensus 143 ~~d~~i~~wd~ 153 (154)
+.|..+++|+.
T Consensus 265 gtd~r~r~wn~ 275 (397)
T KOG4283|consen 265 GTDDRIRVWNM 275 (397)
T ss_pred cCccceEEeec
Confidence 99999999985
No 128
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=3.3e-18 Score=114.69 Aligned_cols=145 Identities=23% Similarity=0.319 Sum_probs=107.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCC--CCce-eecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccce-eEeecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKP--EPTK-VLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTA-MIHHNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~--~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~-~~~~~~~ 75 (154)
|+.+++||.|++|.+..+..... .+.. +..|...|+++.|+| ..+.|+++++|.+|++||+++..... ...|..
T Consensus 643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd- 721 (1012)
T KOG1445|consen 643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD- 721 (1012)
T ss_pred eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC-
Confidence 57899999999999987544222 1223 348999999999999 56789999999999999999876653 444554
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC----eEEE
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG----QVYV 150 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~~ 150 (154)
.++.++|+|+|+.+++.+.||+|++|+.++++ .+..-++.... ....+.|.- ++.+++..+.|. .|.+
T Consensus 722 -----qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt-RgARi~wac-dgr~viv~Gfdk~SeRQv~~ 794 (1012)
T KOG1445|consen 722 -----QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGT-RGARILWAC-DGRIVIVVGFDKSSERQVQM 794 (1012)
T ss_pred -----ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccC-cceeEEEEe-cCcEEEEecccccchhhhhh
Confidence 57789999999999999999999999998764 34444433322 224556665 677777766553 4666
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
||.
T Consensus 795 Y~A 797 (1012)
T KOG1445|consen 795 YDA 797 (1012)
T ss_pred hhh
Confidence 654
No 129
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=1.7e-17 Score=111.49 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=97.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++|||.|.+|++|.-. +. ...+.+|.+.|+.+++-+++ .|++++.||.|+.|++..........|..
T Consensus 154 ~vTgsaDKtIklWk~~--~~----l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn------ 220 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKGG--TL----LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTN------ 220 (745)
T ss_pred EEeccCcceeeeccCC--ch----hhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccce------
Confidence 4688888888888763 21 33445899999999998765 57888999999999994444334444433
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+++...+++..++++++|++++||+.. ++.+.+..+.... +++..-+ + .-+++|+.||.|++|..
T Consensus 221 ~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsi--Wsa~~L~-N-gDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 221 FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSI--WSAKVLL-N-GDIVVGGSDGRVRVFTV 287 (745)
T ss_pred EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccce--EEEEEee-C-CCEEEeccCceEEEEEe
Confidence 34455667788999999999999999977 6677776444344 4444444 3 34788999999999964
No 130
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=9.4e-19 Score=122.57 Aligned_cols=150 Identities=18% Similarity=0.218 Sum_probs=113.3
Q ss_pred CeeecCCCcEEEEEccCC--CCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSM--ATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
|+.|.+||.|.+||.... ............|.+.|..+.|++ .++.|++|+.||.|.|||+...+......... ..
T Consensus 83 IaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~-~~ 161 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA-PP 161 (1049)
T ss_pred eeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC-Cc
Confidence 467899999999998763 222222333448999999999999 56699999999999999999877665554221 11
Q ss_pred ceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC---eEEEeeC
Q 038702 78 RWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG---QVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~wd~ 153 (154)
..+ ..++|+.. .+.|++++.+|..-|||++..+.+..+..+.....+..++|||+....+++++.|. .|.+||+
T Consensus 162 ~eI--~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 162 SEI--KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL 239 (1049)
T ss_pred ccc--eEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecc
Confidence 222 34578875 45788889999999999999888877775555555678999998877888887654 5899996
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=5.4e-18 Score=113.81 Aligned_cols=135 Identities=15% Similarity=0.211 Sum_probs=103.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++||.|.++++|...... ....+|...|.++..-|++ .+++|+.|.+|++|.-.+.. ..+.. +...+
T Consensus 115 ~iSgSWD~TakvW~~~~l~------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l-~tf~g----HtD~V 182 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRIGELV------YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLL-KTFSG----HTDCV 182 (745)
T ss_pred eEecccccceEEecchhhh------cccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchh-hhhcc----chhhe
Confidence 5799999999999986543 3356999999999999987 89999999999999863321 12222 33345
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+. +++-+ +..+++++.||.|++|++ +++.+.++.+|..... ++...+ ++..+++++.|+++++|+.+
T Consensus 183 Rg--L~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vY--sis~~~-~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 183 RG--LAVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVY--SISMAL-SDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ee--eEEec-CCCeEeecCCceEEEEec-cCceeeeeeccceEEE--EEEecC-CCCeEEEecCCceEEEeecC
Confidence 53 34454 446779999999999999 8899999998877665 444444 46899999999999999853
No 132
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.4e-17 Score=106.03 Aligned_cols=145 Identities=21% Similarity=0.289 Sum_probs=111.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-------------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT------------- 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~------------- 67 (154)
|++|+.||.+|+|+.+.... ......|...|.++.|+|||++|++-+.| ..++|+.+++...
T Consensus 159 latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~ 233 (398)
T KOG0771|consen 159 LATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFS 233 (398)
T ss_pred eeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhh
Confidence 57899999999999887765 55666899999999999999999999999 8999999876111
Q ss_pred -------------eeEeecCCCCc-----------------------eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 68 -------------AMIHHNNQTGR-----------------------WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 68 -------------~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
.......+.+. .-...+++.+++|++++.|+.||.|-|++..+.
T Consensus 234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l 313 (398)
T KOG0771|consen 234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL 313 (398)
T ss_pred hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee
Confidence 00000001100 001224577899999999999999999999999
Q ss_pred cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 112 RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+.++..+..|...+ +.+.|+| +.+++++-+.|..+.+.-
T Consensus 314 q~~~~vk~aH~~~V-T~ltF~P-dsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 314 QRLQYVKEAHLGFV-TGLTFSP-DSRYLASVSSDNEAAVTK 352 (398)
T ss_pred eeeEeehhhheeee-eeEEEcC-CcCcccccccCCceeEEE
Confidence 98888876666644 8999999 788888888888776653
No 133
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=2.6e-17 Score=102.27 Aligned_cols=147 Identities=19% Similarity=0.250 Sum_probs=106.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee----cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc---------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL----SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--------- 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~--------- 67 (154)
+++||.|.+|++|++++.. +...+ +|.+.|.++.|+++|.++++++.|.++++|++...+..
T Consensus 151 vls~SkD~svRlwnI~~~~-----Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~ 225 (385)
T KOG1034|consen 151 VLSASKDHSVRLWNIQTDV-----CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITY 225 (385)
T ss_pred EEEecCCceEEEEeccCCe-----EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhccc
Confidence 4789999999999999877 44444 69999999999999999999999999999998732100
Q ss_pred -------------eeEe-------ecC-------------------------------------CCCc------------
Q 038702 68 -------------AMIH-------HNN-------------------------------------QTGR------------ 78 (154)
Q Consensus 68 -------------~~~~-------~~~-------------------------------------~~~~------------ 78 (154)
..+. |.+ +...
T Consensus 226 ~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~ 305 (385)
T KOG1034|consen 226 SPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM 305 (385)
T ss_pred CCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence 0000 000 0000
Q ss_pred -eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc--eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 -WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 -~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.-+..+|.|-++.|+.|...|.|.+||++..++ ..++..+.........+|+. ++.+|+....|++|.-||.
T Consensus 306 c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 306 CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 01112346677788899999999999999996654 33343333444446778887 8899999999999999984
No 134
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=4.7e-17 Score=98.41 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=104.0
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAI 86 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (154)
-|.|.|......+. ...+..|.....||+|+|+|++|++|+.|-.+.+||+...-+...+....- .++ .+.
T Consensus 168 lG~v~ILsypsLkp----v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw---pVR--TlS 238 (313)
T KOG1407|consen 168 LGCVEILSYPSLKP----VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW---PVR--TLS 238 (313)
T ss_pred CceEEEEecccccc----ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC---ceE--EEE
Confidence 46777777765553 455558999999999999999999999999999999988776665543321 234 457
Q ss_pred EcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC---------CeEEEee
Q 038702 87 WGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG---------GQVYVWT 152 (154)
Q Consensus 87 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------~~i~~wd 152 (154)
|+.+|++|+++++|..|-|=++++|..+..++ ..+.. ..++|+| ...+|+-+..| |.++++-
T Consensus 239 FS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t-~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG 309 (313)
T KOG1407|consen 239 FSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPT-FTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFG 309 (313)
T ss_pred eccCcceeeccCccceEEeEecccCCeEEEee--ccCCc-eeEEecC-CCceeeEEecCCCCccccccceeEEec
Confidence 99999999999999999999999999988886 33344 6799999 66777766543 4667664
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-17 Score=109.22 Aligned_cols=144 Identities=12% Similarity=0.108 Sum_probs=116.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+..+.|+|||++.... ...+.+|.+.|+++.++-...++++++..|.|.+..+.++.....+.+... ..+
T Consensus 94 ~~sgG~~~~Vkiwdl~~kl~----hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg--qsv 167 (673)
T KOG4378|consen 94 EISGGQSGCVKIWDLRAKLI----HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG--QSV 167 (673)
T ss_pred eeccCcCceeeehhhHHHHH----hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC--CeE
Confidence 46899999999999985442 333449999999999999999999999999999999999888877776532 223
Q ss_pred eEEEEEEcCCCc-EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDS-CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+ .+.|+|..+ +|.+++.+|.|.+||+....+...+...|.... ..++|+|.++.+|++.++|++|.+||+
T Consensus 168 R--ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~-~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 168 R--LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC-RGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred E--EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc-CcceecCCccceEEEecccceEEEeec
Confidence 2 357888765 567789999999999998877766654443332 578999988899999999999999997
No 136
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.8e-17 Score=95.67 Aligned_cols=143 Identities=12% Similarity=0.052 Sum_probs=109.4
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCC-C-ceEe
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT-G-RWIS 81 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~ 81 (154)
|..|..|++=|-..++. ...+.+|.+.|.++ ++=++-.|++|+.|.+|+.||++-+.....+...... + ....
T Consensus 159 gagdc~iy~tdc~~g~~----~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQG----FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred CCCcceEEEeecCCCCc----ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccce
Confidence 34455666666666654 45556999999886 3347889999999999999999977766554321111 1 1112
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+..++..|.|++|++|-.|..-.+||++.++.++.+..|...+ .++.|+| ...+++++++|.+|++=|+|
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadi--r~vrfsp-~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI--RCVRFSP-GAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccce--eEEEeCC-CceEEEEecccceEEEeecc
Confidence 3356789999999999999999999999999999998766555 4689999 67899999999999998875
No 137
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.1e-17 Score=107.17 Aligned_cols=145 Identities=20% Similarity=0.253 Sum_probs=107.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCC-----------------CceeecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEecc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPE-----------------PTKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGV 62 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~-----------------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~ 62 (154)
+|.|..|..|.|||+.-.....|. .....+|++.|.++.|+.. .+.|++|+.|.+|++||+.
T Consensus 195 vAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~ 274 (463)
T KOG0270|consen 195 VAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD 274 (463)
T ss_pred EEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcC
Confidence 477999999999998643321110 0112268999999999884 5688999999999999999
Q ss_pred ccccceeEeecCCCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccce-eEEeCCCcCCcceEEEecCCCccEEE
Q 038702 63 NFENTAMIHHNNQTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSV-ATLQSPYISAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (154)
++++...+.+.. ..++ ++.|+|. +.+|++|+.|+++.+.|.|..... ..++ -...+ -.++|+|.....++
T Consensus 275 ~g~p~~s~~~~~---k~Vq--~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~V--Ekv~w~~~se~~f~ 346 (463)
T KOG0270|consen 275 TGKPKSSITHHG---KKVQ--TLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEV--EKVAWDPHSENSFF 346 (463)
T ss_pred CCCcceehhhcC---Ccee--EEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccce--EEEEecCCCceeEE
Confidence 999888776433 2344 5678885 679999999999999999953322 2222 11122 46889998888999
Q ss_pred EEcCCCeEEEeeC
Q 038702 141 GATGGGQVYVWTS 153 (154)
Q Consensus 141 ~~~~d~~i~~wd~ 153 (154)
++..||+++-+|+
T Consensus 347 ~~tddG~v~~~D~ 359 (463)
T KOG0270|consen 347 VSTDDGTVYYFDI 359 (463)
T ss_pred EecCCceEEeeec
Confidence 9999999999986
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=8.5e-18 Score=105.65 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=89.4
Q ss_pred ccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 31 HKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 31 ~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
-.+.|.++.|+|.. ..|+++..|+.|.+||++.............. -.++|+|++--+.+++.|..++.||++
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT------N~IswnPeafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT------NTICWNPEAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccc------cceecCccccceeeccccccceehhhh
Confidence 35678899999954 56777779999999999998877544332221 156899988889999999999999998
Q ss_pred Cc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 110 QR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 110 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.. +++....+|...+ .++.|+| .|+-|++|++|.+|+||..
T Consensus 260 ~l~~p~~v~~dhvsAV--~dVdfsp-tG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 260 NLSRPLNVHKDHVSAV--MDVDFSP-TGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred hhcccchhhcccceeE--EEeccCC-CcchhccccccceEEEeec
Confidence 65 4556666554443 6899999 8899999999999999975
No 139
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=1.9e-17 Score=110.42 Aligned_cols=150 Identities=18% Similarity=0.200 Sum_probs=99.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccce-------eE-e
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTA-------MI-H 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~-------~~-~ 71 (154)
|++++.|.++++||+...+... ....++|.+.|.+++|.| +...|++|+.||.+.|||++-..... .. .
T Consensus 115 lVsasGDsT~r~Wdvk~s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 115 LVSASGDSTIRPWDVKTSRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred EEEccCCceeeeeeeccceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence 5789999999999998876421 123559999999999999 56789999999999999998443110 00 0
Q ss_pred ecC-----------------CCCceEeEEEEEEcCCCcEEEEEcc-CCeEEEecCCCccceeEE--------eCCC-cCC
Q 038702 72 HNN-----------------QTGRWISSFRAIWGWDDSCIFIGNM-TRTVEVISPAQRRSVATL--------QSPY-ISA 124 (154)
Q Consensus 72 ~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~--------~~~~-~~~ 124 (154)
+.. ........+.+.+..|...|++++. |+.|++||++........ ..+. ...
T Consensus 193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~ 272 (720)
T KOG0321|consen 193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV 272 (720)
T ss_pred ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence 000 0111111223556678899999887 999999999854332221 1111 111
Q ss_pred cceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 125 IPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
-...+..+. .|.+|.+.+.|+.|++||+
T Consensus 273 G~~nL~lDs-sGt~L~AsCtD~sIy~ynm 300 (720)
T KOG0321|consen 273 GQVNLILDS-SGTYLFASCTDNSIYFYNM 300 (720)
T ss_pred eeEEEEecC-CCCeEEEEecCCcEEEEec
Confidence 123455555 4566666666999999996
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.4e-16 Score=102.91 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=111.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEe--------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIH-------- 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~-------- 71 (154)
|++|+.|+++++|.+....... ...+.=...+|.+.+|.|+|. .+++++.-..+..||+++.+...+..
T Consensus 228 llvaG~d~~lrifqvDGk~N~~--lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 228 LLVAGLDGTLRIFQVDGKVNPK--LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred EEEecCCCcEEEEEecCccChh--heeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence 4789999999999998654321 223334567899999999998 89999999999999998765332111
Q ss_pred -------ecC------CCCceE------------------eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 72 -------HNN------QTGRWI------------------SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 72 -------~~~------~~~~~~------------------~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
|.. .....+ .+-..+|+.+++.|+.++.+|.|.+||+++..++..+..
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D- 384 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD- 384 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-
Confidence 000 000001 111357889999999999999999999999999888874
Q ss_pred CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 121 YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
...+...+++.++ ++.+|++|+..|.|.|||.
T Consensus 385 ~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 385 DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred cCccceeeeeecC-CCceEEeccCcceEEEecc
Confidence 3444457788888 7889999999999999985
No 141
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=1.8e-17 Score=111.24 Aligned_cols=145 Identities=17% Similarity=0.249 Sum_probs=106.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+++++|-+|++||++..+. ...+.+|.+.|..++|+|+|+++++.+.||++++|+.+..+.+..-+......
T Consensus 693 La~asyd~Ti~lWDl~~~~~----~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt--- 765 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANAKL----YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGT--- 765 (1012)
T ss_pred hhhhhccceeeeeehhhhhh----hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccC---
Confidence 57899999999999998876 67778999999999999999999999999999999999887765443322222
Q ss_pred eEEEEEEcCCCcEEEEEccCC----eEEEecCCCc--cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTR----TVEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~----~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.-++.|.-+|+++++.+.|. .|.+||..+- ..+.+..-...... .--.++++.+-+|++|-.|..|++|.+
T Consensus 766 RgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~-LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 766 RGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP-LVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcc-ccccccCCCceEEEecCCCceEEEEEe
Confidence 223556888999998887664 5888987643 33433321111111 223455645567889999999999975
No 142
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.7e-16 Score=97.75 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=104.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.||.|+++|+.+++ ...+-.|..+|+|+.+++....+++|+.|++|++||.+.......+.. +..+
T Consensus 68 ~~~G~~dg~vr~~Dln~~~-----~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~----~kkV 138 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGN-----EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ----GKKV 138 (323)
T ss_pred EEEeccCceEEEEEecCCc-----ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc----CceE
Confidence 3689999999999999876 455568999999999999889999999999999999987333322221 1133
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.+ .+-.+..|+.|+.+..+.+||++......+.+...-.....+++..| +++-++.++-||.|.+
T Consensus 139 y~----~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 139 YC----MDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAV 203 (323)
T ss_pred EE----EeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEE
Confidence 32 34568899999999999999999876555444333334446788888 6677888899999876
No 143
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.75 E-value=2.7e-16 Score=94.71 Aligned_cols=112 Identities=14% Similarity=0.252 Sum_probs=82.5
Q ss_pred cccCCeEEEEEcCCCCEEEEe--eCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC---CeEE
Q 038702 30 SHKRAVHSAYFSPSGSSLATT--SFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT---RTVE 104 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~--~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~ 104 (154)
...++|.+++|+|+|+.|+.. ..+..+.+||++ .+....+... ... .+.|+|+|+++++++.+ |.|.
T Consensus 57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~-----~~n--~i~wsP~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQ-----PRN--TISWSPDGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCC-----Cce--EEEECCCCCEEEEEEccCCCcEEE
Confidence 445679999999999987654 457799999996 2222222211 112 46899999999998744 6799
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC------CCeEEEeeCC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG------GGQVYVWTSD 154 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~wd~~ 154 (154)
+||.++.+.+..... .. +..++|+| ++++|+++.. |..++||+.+
T Consensus 129 ~wd~~~~~~i~~~~~--~~--~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 129 FWDVRKKKKISTFEH--SD--ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEECCCCEEeecccc--Cc--EEEEEEcC-CCCEEEEEEeccceeccccEEEEEec
Confidence 999998888776652 22 36789999 8899988864 7889999863
No 144
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.75 E-value=7.8e-17 Score=109.41 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=114.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCC--CEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSG--SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
||+++.|..|+|+|+..+-. +.+.. +|...|+++.|..+| ..+++++.|..+..--.+.......+......-
T Consensus 519 LASasrdRlIHV~Dv~rny~----l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~ 594 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYD----LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL 594 (1080)
T ss_pred hhhccCCceEEEEecccccc----hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc
Confidence 58899999999999976543 44444 999999999998877 688999999877543333333333333222222
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC-CcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS-AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.....+.++..|..+++++++.|++|+||++.+++..+.+++.+.. .....+..+| .+.|+++...|+++.++|.
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEe
Confidence 3345667889999999999999999999999999999999975432 3347889999 7899999999999999985
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=7.1e-18 Score=118.28 Aligned_cols=145 Identities=14% Similarity=0.224 Sum_probs=108.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCce--eecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTK--VLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
||+|+.||.|.|||+...+. +.. ...-.+.|.+++|+.. .+.|++++.+|++.+||++..+....+.....
T Consensus 132 LASGa~~geI~iWDlnn~~t----P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~-- 205 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPET----PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG-- 205 (1049)
T ss_pred eeccCCCCcEEEeccCCcCC----CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC--
Confidence 68999999999999987543 222 2245678999999884 56788899999999999998866544332111
Q ss_pred ceEeEEEEEEcCCCc-EEEEEccCC---eEEEecCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 78 RWISSFRAIWGWDDS-CIFIGNMTR---TVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~-~l~~~~~d~---~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
...+-.+.|+|+.. .+++++.|. .|.+||+|. ..+++++.+|..++ .++.|++.+..++++++.|+.|.+||
T Consensus 206 -~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gi--lslsWc~~D~~lllSsgkD~~ii~wN 282 (1049)
T KOG0307|consen 206 -RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGI--LSLSWCPQDPRLLLSSGKDNRIICWN 282 (1049)
T ss_pred -ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccce--eeeccCCCCchhhhcccCCCCeeEec
Confidence 12344678999864 455555443 699999984 45677777776666 48899998889999999999999998
Q ss_pred CC
Q 038702 153 SD 154 (154)
Q Consensus 153 ~~ 154 (154)
..
T Consensus 283 ~~ 284 (1049)
T KOG0307|consen 283 PN 284 (1049)
T ss_pred CC
Confidence 63
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.5e-16 Score=104.05 Aligned_cols=143 Identities=17% Similarity=0.246 Sum_probs=110.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-c-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-S-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
||.+-.||.|.+|+++.+-. ....+ + ..+.|-+++|++ +..|.+.+.+|+|..||+.+.++.........
T Consensus 40 lAvsRt~g~IEiwN~~~~w~----~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg--- 111 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWF----LEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGG--- 111 (691)
T ss_pred eeeeccCCcEEEEccCCCce----eeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCc---
Confidence 56788899999999987542 22222 4 456899999995 55677888999999999999887765543322
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...+++-+|.+..++.|+.||.+..++...++......-..+.....++.|+| ++..+++|+.||.|++||..
T Consensus 112 --~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 112 --AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred --ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcC
Confidence 45577889999999999999988888888777654443334444457899999 77889999999999999973
No 147
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=7.2e-17 Score=99.03 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=106.1
Q ss_pred eecCCCcEEEEEccCCCCCC--CCCceeecccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 3 TSSTDGTACIWDLRSMATDK--PEPTKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
++-.|..|.+|++....... .......++....++-+|+| +++.+++. .|+++..||+++......+.. .++.
T Consensus 139 asm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d--AHgq 215 (370)
T KOG1007|consen 139 ASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED--AHGQ 215 (370)
T ss_pred EEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh--hhcc
Confidence 34558889999998765411 00111124667788999999 77887775 688999999998766544432 2333
Q ss_pred eEeEEEEEEcCCCc-EEEEEccCCeEEEecCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDS-CIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+ ..+.|+|+.+ +|++++.||.|||||.+. ..+++++.+|...+ +++.|+|...+++++|+.|..|.+|..
T Consensus 216 ~v--rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv--W~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 216 RV--RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV--WAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred ee--eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE--EEEEecCccceEEEecCCCceeEEEec
Confidence 33 3567899765 789999999999999985 56788887776554 688999988899999999999999864
No 148
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.74 E-value=4.2e-17 Score=111.63 Aligned_cols=137 Identities=17% Similarity=0.219 Sum_probs=113.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
+++++.+|.+++||+.+.. ......-...+.++..+.....++.+..|-.|+++|..+.+....+. |.+ .
T Consensus 508 ~vsa~~~Gilkfw~f~~k~-----l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n----r 578 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKKV-----LKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN----R 578 (910)
T ss_pred EEEccCcceEEEEecCCcc-----eeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc----c
Confidence 4789999999999998755 44445667788899999988999999999999999999877765543 444 2
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC-CeEEEee
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG-GQVYVWT 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~~wd 152 (154)
+ -.+.|+|||++|++++.|++||+||+.++.++-.+.- ...+..+.++| ++++|++...| .-|++|-
T Consensus 579 i--td~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 579 I--TDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred e--eeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---CCcceeeEECC-CCCEEEEEEecCceEEEEE
Confidence 3 3668999999999999999999999999998877752 23446899999 89999999988 6799994
No 149
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.4e-16 Score=107.18 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=116.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~ 79 (154)
|++|+.+++|.+|.+..+.. ...+....-++++++|+-+|++++.|+.|-.|++.++.+......+. |..
T Consensus 69 f~~~s~~~tv~~y~fps~~~----~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a----- 139 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEE----DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA----- 139 (933)
T ss_pred eEEeeccceEEEeeCCCCCc----cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-----
Confidence 57899999999999988774 33344778899999999999999999999999999998876655443 333
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC------CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP------YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++++.|+|++.+|++.+.||.|++||+.++.+..++.+- ....++..++|+| ++..|+....|+.|++|+.
T Consensus 140 -pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r 217 (933)
T KOG1274|consen 140 -PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSR 217 (933)
T ss_pred -ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEcc
Confidence 3557789999999999999999999999999887777642 1244567899999 7677888889999999875
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.73 E-value=1.7e-15 Score=96.94 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=98.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEE-EEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+++++.|+.+++||+.+++ ......+...+.+++|+|+++.+ ++++.++.+++||..+.+....+.... .
T Consensus 4 ~~s~~~d~~v~~~d~~t~~-----~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~ 74 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLE-----VTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP----D 74 (300)
T ss_pred EEEecCCCEEEEEECCCCc-----eEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC----C
Confidence 4688999999999998765 33334333446789999999876 566789999999998876544332111 1
Q ss_pred EeEEEEEEcCCCcEEEEE-ccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC-eEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIG-NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG-QVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~wd~ 153 (154)
. ..++|+|+++.++++ ..++.+++||+++.+.+..+.... ....++++| ++.++++++.++ .+.+||.
T Consensus 75 ~--~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 75 P--ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSP-DGKIVVNTSETTNMAHFIDT 144 (300)
T ss_pred c--cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC---CcceEEECC-CCCEEEEEecCCCeEEEEeC
Confidence 1 245789999877655 568999999999887777665322 125688999 778888887765 4666775
No 151
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=4.6e-15 Score=93.59 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=83.0
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCe-EEEEeccccccceeEeecCCCCceEeEEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDT-IGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.|.+||..+.+. ...+..|.+++.+++|+++|.+||+++..|+ ||++.+.+++....++.... .+..++
T Consensus 151 t~GdV~l~d~~nl~~----v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~IyS 223 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQP----VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIYS 223 (391)
T ss_pred CCceEEEEEccccee----eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEEE
Confidence 368899999987664 4445599999999999999999999999987 78999988888777765432 567788
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
++|+|++++|++.+..++|++|.+.
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEec
Confidence 9999999999999999999999875
No 152
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.72 E-value=1.3e-16 Score=96.85 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=104.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|++|.+||.|..||++++.. ..... .|...|+.++++|+..+|++++.|.+-++||.++.+....+....+
T Consensus 162 ii~Ghe~G~is~~da~~g~~----~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P---- 233 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKE----LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP---- 233 (327)
T ss_pred EEEecCCCcEEEEEcccCce----eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc----
Confidence 57899999999999998764 44443 7899999999999999999999999999999999888777654433
Q ss_pred EeEEEEEEcCCCcEEEEEccCCe--E------------EEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRT--V------------EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~--i------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
+. +++++|-...++.|+-... | |+|++-..+.+..+++|..+. .+++++| ++...++|+.|
T Consensus 234 vN--~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPI--NsvAfhP-dGksYsSGGED 308 (327)
T KOG0643|consen 234 VN--TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPI--NSVAFHP-DGKSYSSGGED 308 (327)
T ss_pred cc--ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCc--ceeEECC-CCcccccCCCC
Confidence 22 4567887666655542222 2 222222334556677776555 5899999 89999999999
Q ss_pred CeEEEee
Q 038702 146 GQVYVWT 152 (154)
Q Consensus 146 ~~i~~wd 152 (154)
|.|++.-
T Consensus 309 G~VR~h~ 315 (327)
T KOG0643|consen 309 GYVRLHH 315 (327)
T ss_pred ceEEEEE
Confidence 9999864
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.71 E-value=1e-16 Score=99.68 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=89.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+|+|+.-|.|+|.|+.+++. .....+|...|..+.+.| ..+++++++.|.+|++|++++..+..+++-...+ .
T Consensus 108 la~~G~~GvIrVid~~~~~~----~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH--r 181 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQC----SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH--R 181 (385)
T ss_pred EEeecceeEEEEEecchhhh----ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc--c
Confidence 46778899999999998875 566679999999999999 4589999999999999999999988877633222 2
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
-.++++.|++++.++++++.|..+++|++...
T Consensus 182 deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 182 DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred CcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 34678899999999999999999999999843
No 154
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=6e-16 Score=96.43 Aligned_cols=141 Identities=20% Similarity=0.247 Sum_probs=104.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++++.|.+..+||++++.. ...+.+|....+.++-+|..+++++++.|.+.++||.+..-....... .+..
T Consensus 287 ~vTaSWDRTAnlwDVEtge~----v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ--GHtd-- 358 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEV----VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ--GHTD-- 358 (481)
T ss_pred eeeeeccccceeeeeccCce----eccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec--cccc--
Confidence 47899999999999999884 444559999999999999999999999999999999985433222211 1222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+.++.|.. +..+++|+.|.+|++||++.. .++.+++... .. ..++.+. ...+++.--.++.|++||+.
T Consensus 359 tVTS~vF~~-dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS-~~--NRvavs~-g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 359 TVTSVVFNT-DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS-PA--NRVAVSK-GHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ceeEEEEec-CCceeecCCCceEEEeeeccccCcceeeecCC-cc--ceeEeec-CCceEEeccCCceEEEEecC
Confidence 233556764 456789999999999999975 4667776332 22 3456655 44577777788899999973
No 155
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=3.4e-15 Score=94.17 Aligned_cols=139 Identities=12% Similarity=0.183 Sum_probs=107.4
Q ss_pred CCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEe--eCCCeEEEEeccccccceeEe-ecCCCCceEeE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATT--SFDDTIGIWSGVNFENTAMIH-HNNQTGRWISS 82 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~--~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (154)
...|+|||+++.+.-. .+... .+...+.++.+++.+.+++.- ...|.|.+||..+.+....+. |.. .+.
T Consensus 105 ee~IyIydI~~MklLh--TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----~lA- 177 (391)
T KOG2110|consen 105 EESIYIYDIKDMKLLH--TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----PLA- 177 (391)
T ss_pred cccEEEEecccceeeh--hhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC----cee-
Confidence 3459999999877310 11112 456667777777777788763 347899999999887766554 333 233
Q ss_pred EEEEEcCCCcEEEEEccCCe-EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 83 FRAIWGWDDSCIFIGNMTRT-VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.++|+++|.+|||++..|+ ||++.+.+|+.+.+++.....+...+++|+| ++.+|++.+..++|.++.++
T Consensus 178 -alafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 178 -ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred -EEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEec
Confidence 5689999999999999996 7999999999999998766666668899999 88999999999999999874
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=8.6e-16 Score=95.57 Aligned_cols=121 Identities=20% Similarity=0.238 Sum_probs=88.9
Q ss_pred ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce--------eEeec---------------------------
Q 038702 29 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA--------MIHHN--------------------------- 73 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~--------~~~~~--------------------------- 73 (154)
.+|.+.|++++|+.+|.+|++++.|++|++|+++...... .+.|.
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 4899999999999999999999999999999987532110 00000
Q ss_pred -------------------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCC
Q 038702 74 -------------------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH 134 (154)
Q Consensus 74 -------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (154)
-+..+.+.++..-....+.++++++.|..|.+|+++ |+.+..+........ ..+.+|
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~--~aavSP- 238 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY--DAAVSP- 238 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc--ceeeCC-
Confidence 000111122222334567899999999999999999 888888875544443 567888
Q ss_pred CccEEEEEcCCCeEEEeeC
Q 038702 135 QVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 135 ~~~~l~~~~~d~~i~~wd~ 153 (154)
+++++++++..-.|++|.+
T Consensus 239 ~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred CCcEEEEecCCCCceEEEE
Confidence 8999999999999999975
No 157
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.71 E-value=7.7e-16 Score=103.78 Aligned_cols=139 Identities=15% Similarity=0.219 Sum_probs=100.2
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCceEeEEEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRWISSFRAIW 87 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 87 (154)
.|++|+...... ...+.+|.-.|+.++|||++++|++.+.|.++.+|........... .....+.+. +..+.|
T Consensus 553 vI~lw~t~~W~~----~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRI--IWdcsW 626 (764)
T KOG1063|consen 553 VIRLWNTANWLQ----VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRI--IWDCSW 626 (764)
T ss_pred EEEEEeccchhh----hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceE--EEEccc
Confidence 488999887664 4567799999999999999999999999999999998554333221 122233333 347789
Q ss_pred cCCCcEEEEEccCCeEEEecCCCc--cceeEEeCCCcCCcceEEEecCC----CccEEEEEcCCCeEEEeeC
Q 038702 88 GWDDSCIFIGNMTRTVEVISPAQR--RSVATLQSPYISAIPCRFHAHPH----QVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 88 ~~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~d~~i~~wd~ 153 (154)
+|++.+++|++.|.+|++|..... +.+..+....-....+++++.|. ....++.|-..|.|.+|..
T Consensus 627 ~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 627 SPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred CcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 999999999999999999998866 44433221111112245565543 3337888889999999974
No 158
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.70 E-value=5.6e-16 Score=105.39 Aligned_cols=116 Identities=14% Similarity=0.180 Sum_probs=100.9
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC-CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ-TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
+..++.++..|...++++++.|..|+||++++++....+..... .+. .+.+...|.|.|+++.+.|.++.++|..+
T Consensus 596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~---lIKv~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD---LIKVILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc---eEEEEECCCccEEEEeecCCceEEEEecc
Confidence 45789999999999999999999999999999998877754332 243 33567899999999999999999999999
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++++.++.+|...+ ..+.|.+ +...|++.+.||.|.+|.+
T Consensus 673 gEcvA~m~GHsE~V--TG~kF~n-DCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 673 GECVAQMTGHSEAV--TGVKFLN-DCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred chhhhhhcCcchhe--eeeeecc-cchhheeecCCceEEEEEC
Confidence 99999999887665 5788998 7899999999999999986
No 159
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=1.2e-15 Score=93.75 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=103.6
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
....|+++..||+++.+. ...+. .|...|..+.|+|+-+ .|++++.||.|++||.+..+.+....+ .+.+++
T Consensus 188 ~tt~d~tl~~~D~RT~~~----~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--~HsHWv 261 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLRTMKK----NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--GHSHWV 261 (370)
T ss_pred EEeCCCcEEEEEccchhh----hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--CCceEE
Confidence 345689999999998775 44444 7999999999999765 678899999999999998776544332 344555
Q ss_pred eEEEEEEcCC-CcEEEEEccCCeEEEecCCCcc-----------------------------ceeEEeCCCcCCcceEEE
Q 038702 81 SSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRR-----------------------------SVATLQSPYISAIPCRFH 130 (154)
Q Consensus 81 ~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 130 (154)
. .+.|+|. .+++++++.|..|.+|...+-. .+.++..|...+ .+++
T Consensus 262 W--~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV--Y~~a 337 (370)
T KOG1007|consen 262 W--AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV--YALA 337 (370)
T ss_pred E--EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce--EEEe
Confidence 4 6678885 5688999999999999643110 122333344444 4789
Q ss_pred ecCCCccEEEEEcCCCeEEEe
Q 038702 131 AHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 131 ~~~~~~~~l~~~~~d~~i~~w 151 (154)
|+..++-+|++-++||.+.|=
T Consensus 338 WSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred eccCCCeeEEEeccCceEEee
Confidence 998899999999999998763
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.70 E-value=1.2e-15 Score=102.01 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=103.9
Q ss_pred CeeecC-CCcEEEEEccCCCCCCC----CCceeecc---cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 1 MATSST-DGTACIWDLRSMATDKP----EPTKVLSH---KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 1 l~~~~~-d~~v~vw~~~~~~~~~~----~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
||+++. |+.|+|||+++...... ....+.-| .-.+.++.....|.+|.+.+.|++|.+|++......-...+
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~ 311 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF 311 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc
Confidence 466666 99999999987643111 11111223 34577888888899999988999999999987554322221
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
......... ..-..+|++.++++|+.|...++|.+...+. ...+.+|...+ ..++|.|..-.-+++++.|-.+++|
T Consensus 312 sg~~~~sf~-vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eV--t~V~w~pS~~t~v~TcSdD~~~kiW 388 (720)
T KOG0321|consen 312 SGKLNSSFY-VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREV--TTVRWLPSATTPVATCSDDFRVKIW 388 (720)
T ss_pred cCcccceee-eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEE--EEEeeccccCCCceeeccCcceEEE
Confidence 111111111 1335689999999999999999999987654 34445565555 5678888666678899999999999
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
++
T Consensus 389 ~l 390 (720)
T KOG0321|consen 389 RL 390 (720)
T ss_pred ec
Confidence 97
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.3e-15 Score=91.91 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=98.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC--CCCEEEEeeCCCeEEEEecccccc----ceeEeecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFEN----TAMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~----~~~~~~~~ 74 (154)
+|||+.|++|+|||.++.............|.+.|..+.|.+ -|+.+++++.|+++.||.-..... ........
T Consensus 28 mAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~tt 107 (361)
T KOG2445|consen 28 MATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTT 107 (361)
T ss_pred eeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEE
Confidence 589999999999998665543333344558999999999966 589999999999999998632111 11111100
Q ss_pred CCCceEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCc------cceeEEe---C--CCcCCcceEEEecCC--CccEE
Q 038702 75 QTGRWISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQR------RSVATLQ---S--PYISAIPCRFHAHPH--QVGTL 139 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~------~~~~~~~---~--~~~~~~~~~~~~~~~--~~~~l 139 (154)
.......++.+.|.|. |-.+++++.||.+|||+.... .+...+. . ......+.++.|+|. ...+|
T Consensus 108 l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~i 187 (361)
T KOG2445|consen 108 LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLI 187 (361)
T ss_pred eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceE
Confidence 1111124557788885 679999999999999986533 3333332 0 011222356778764 33578
Q ss_pred EEEcCC-----CeEEEee
Q 038702 140 AGATGG-----GQVYVWT 152 (154)
Q Consensus 140 ~~~~~d-----~~i~~wd 152 (154)
+.|+.+ +.++||.
T Consensus 188 Avgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 188 AVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred EEEcccCCccccceEEEE
Confidence 887765 4677775
No 162
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.69 E-value=7.4e-15 Score=96.23 Aligned_cols=137 Identities=11% Similarity=0.131 Sum_probs=105.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++|++.|+.+++|+ ..+ +.-...-.++..|+.|+|.| .++.|+..|...+.|.++.....+... +..+
T Consensus 383 ~~T~gqdk~v~lW~--~~k-----~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d----~~~l 450 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN--DHK-----LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD----NEQL 450 (626)
T ss_pred eeeccCcceEEEcc--CCc-----eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec----CCce
Confidence 58999999999999 222 33334567789999999999 999999999999999998544443322 2223
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .++|+|+|.+|+.|+.|+.|++|.+.... .......++. .....+.|++ ++++|.+-+.|-.|-.|..
T Consensus 451 s--~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 451 S--VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred E--EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecC-CCceEEeccCceEEEEEcc
Confidence 3 46899999999999999999999987544 3333333334 4447899999 8899999999999999954
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.69 E-value=9.4e-16 Score=100.33 Aligned_cols=121 Identities=18% Similarity=0.299 Sum_probs=95.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|.+++++|.|.+||+....+ ..... .|..+...++|+| +..+|++.+.|..|.+||.+.......+....+
T Consensus 180 L~~asd~G~VtlwDv~g~sp----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P--- 252 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMSP----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP--- 252 (673)
T ss_pred eEeeccCCeEEEEeccCCCc----ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC---
Confidence 46799999999999987664 33333 8999999999999 556888999999999999997665544432222
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCC-ccceeEEeCCCcCCcceEEEecC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHP 133 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 133 (154)
.. .++|+++|.+|+.|...|.|..||++. ..++.++..|...+. +++|.|
T Consensus 253 -ls--tvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt--~vafq~ 303 (673)
T KOG4378|consen 253 -LS--TVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVT--RVAFQP 303 (673)
T ss_pred -cc--eeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccccee--EEEeee
Confidence 12 578999999999999999999999995 567777877776654 566665
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.4e-15 Score=96.17 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=116.5
Q ss_pred CeeecCCCcEEEEEccCCCC-CCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMAT-DKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
|++|++|..+++|++...-. +.++++.+. .|...|.|++|....+++++|..+++|...|+++.+...++.+....+
T Consensus 71 L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~ 150 (609)
T KOG4227|consen 71 LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRG 150 (609)
T ss_pred EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccc
Confidence 68999999999999865211 122355555 466899999999999999999999999999999999888877665433
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.+..+|..+.+++.+.++.|.+||.+..+ ....+.....+.....+-|+|..+.+|++.+..+-+.+||+
T Consensus 151 ---~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~ 224 (609)
T KOG4227|consen 151 ---DVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDR 224 (609)
T ss_pred ---ceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceee
Confidence 34566778999999999999999999998654 33222212222233577899999999999999999999996
No 165
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2.2e-15 Score=99.39 Aligned_cols=150 Identities=17% Similarity=0.225 Sum_probs=110.9
Q ss_pred CeeecCCCcEEEEEccCCCCC----CC--CCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC
Q 038702 1 MATSSTDGTACIWDLRSMATD----KP--EPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~----~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
+.+|+.||+|+.|++..+... .+ ....+.||.+.|+.+++++...+|++++.||+++.|+....... .+....
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~-~f~~~~ 437 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC-TFGEPK 437 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc-ccCCcc
Confidence 368999999999987633211 11 11234599999999999999999999999999999987643320 000000
Q ss_pred --------------------------------------------CCCce---EeEEEEEEcCCCcEEEEEccCCeEEEec
Q 038702 75 --------------------------------------------QTGRW---ISSFRAIWGWDDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 75 --------------------------------------------~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~~ 107 (154)
..+.. -..-.+.++|...+.+++..|+.|+++|
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 00000 0111356788889999999999999999
Q ss_pred CCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+++.+.....|...+ .++++.| ++-+|++++.||.+++|.++
T Consensus 518 n~~~~~l~s~~a~~~sv--tslai~~-ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 518 NKTGKILHSMVAHKDSV--TSLAIDP-NGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ccccccchheeecccee--cceeecC-CCceEEeecCCceeehhhcc
Confidence 99999999888776555 4788888 88999999999999999873
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.6e-15 Score=95.63 Aligned_cols=143 Identities=12% Similarity=0.142 Sum_probs=106.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+..+..|-|.+....+++ .+..+.-.+.|..++|+.+++.|++++.+|.|.+||++...+...+.... .+
T Consensus 318 ia~~G~~G~I~lLhakT~e-----li~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G----~v 388 (514)
T KOG2055|consen 318 IAIAGNNGHIHLLHAKTKE-----LITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG----SV 388 (514)
T ss_pred EEEcccCceEEeehhhhhh-----hhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC----cc
Confidence 3567778888888877765 56666778899999999999999999999999999999886554443322 23
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCC------ccceeEEe------------C-------------------C---
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQ------RRSVATLQ------------S-------------------P--- 120 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~------~~~~~~~~------------~-------------------~--- 120 (154)
...+++.++++.|||+|+..|.|.|||..+ ++++..+. . |
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 344667789999999999999999999541 22221110 0 0
Q ss_pred -----------CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 121 -----------YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 121 -----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..-..+.+++|+| .+.+++.|..+|.+.+|.+
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeEee
Confidence 0112235799999 7889999999999999976
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.67 E-value=3.8e-15 Score=92.83 Aligned_cols=145 Identities=20% Similarity=0.276 Sum_probs=106.5
Q ss_pred eecCCCcEEEEEccCCCCCCCCCce----eecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEe-ecCCC
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTK----VLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQT 76 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~ 76 (154)
.++....|+++|+.......+.... .++..+.|.+++|+| +...++.++...++-|+.-...+...... |..
T Consensus 174 faGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g-- 251 (406)
T KOG2919|consen 174 FAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG-- 251 (406)
T ss_pred eecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCC--
Confidence 4677889999999443322211111 124478899999999 55689999999999999887777766554 222
Q ss_pred CceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCC-ccceeEEeCCCc-CCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQ-RRSVATLQSPYI-SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
-+..++|.++|+.|++|+ .|-.|-.||++. ..++..+..|.. .....-+...| ++++|++|+.||.|++||+
T Consensus 252 ----GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 252 ----GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ----CeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEec
Confidence 234678999999999988 466899999995 566667766544 33334567778 8899999999999999998
Q ss_pred C
Q 038702 154 D 154 (154)
Q Consensus 154 ~ 154 (154)
+
T Consensus 327 k 327 (406)
T KOG2919|consen 327 K 327 (406)
T ss_pred C
Confidence 4
No 168
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=9.3e-16 Score=100.94 Aligned_cols=94 Identities=24% Similarity=0.194 Sum_probs=76.3
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
.+.|...+|+|||++|++.+.||.++|+|..+.+........-. ..++++|+|||+|+++|++|--|.||.+...
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-----GLLCvcWSPDGKyIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-----GLLCVCWSPDGKYIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-----ceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence 45888999999999999999999999999998876644432111 3457899999999999999999999999999
Q ss_pred cceeEEeCCCcCCcceEEEec
Q 038702 112 RSVATLQSPYISAIPCRFHAH 132 (154)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~ 132 (154)
+.+..-.+|...+. .++|+
T Consensus 365 RVVARGqGHkSWVs--~VaFD 383 (636)
T KOG2394|consen 365 RVVARGQGHKSWVS--VVAFD 383 (636)
T ss_pred eEEEecccccccee--eEeec
Confidence 88887777766554 45554
No 169
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.67 E-value=1.2e-15 Score=102.90 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=92.8
Q ss_pred CceeecccCCeEEEEEcCCCCEEEEeeCCC-----eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc
Q 038702 25 PTKVLSHKRAVHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM 99 (154)
Q Consensus 25 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 99 (154)
..++++|...|++++.+|+++++++++... -|++|+..+......+. ++...+.+++|+||+++|++.+.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-----~HsLTVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-----GHSLTVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-----ccceEEEEEEECCCCcEEEEeec
Confidence 345679999999999999999999998754 48999988765554221 22235568899999999999999
Q ss_pred CCeEEEecCCCccc----eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 100 TRTVEVISPAQRRS----VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 100 d~~i~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
|+++.+|....... ....+. |. .+.++..|+| ++.+|+|++.|.+|++|..
T Consensus 593 DRt~sl~~~~~~~~~e~~fa~~k~-Ht-RIIWdcsW~p-de~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKDEFRFACLKA-HT-RIIWDCSWSP-DEKYFATASRDKKVKVWEE 647 (764)
T ss_pred CceEEeeeeecccchhhhhccccc-cc-eEEEEcccCc-ccceeEEecCCceEEEEec
Confidence 99999998753321 112332 33 3348889999 8888999999999999975
No 170
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.67 E-value=4e-14 Score=90.65 Aligned_cols=138 Identities=15% Similarity=0.029 Sum_probs=95.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe-eCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++++.++.|++||..+++. ...+..+ ..+..+.|+|+++.++++ ..++.+++||+++.+....+....
T Consensus 47 ~~~~~~~~v~~~d~~~~~~----~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~------ 115 (300)
T TIGR03866 47 VCASDSDTIQVIDLATGEV----IGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV------ 115 (300)
T ss_pred EEECCCCeEEEEECCCCcE----EEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC------
Confidence 4677889999999987652 2222233 335678999999877654 568999999998765544333211
Q ss_pred eEEEEEEcCCCcEEEEEccCC-eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEE-EEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTR-TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~wd~~ 154 (154)
....++|+|++.+++++..++ .+.+||.++++....+.... . ...++|+| ++..| +++..++.|++||++
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~--~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ-R--PRFAEFTA-DGKELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC-C--ccEEEECC-CCCEEEEEcCCCCEEEEEEcC
Confidence 112468999999999888765 57788998877665544222 1 24578898 66666 455579999999973
No 171
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.2e-15 Score=92.95 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=82.9
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.+.. ..|+.|++.|.+|++|+.||.|.+||+.+......+. .+... +.+++|+++|+.|++++.|..+.+||+.
T Consensus 22 d~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls---aH~~p--i~sl~WS~dgr~LltsS~D~si~lwDl~ 95 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS---AHVRP--ITSLCWSRDGRKLLTSSRDWSIKLWDLL 95 (405)
T ss_pred cCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh---ccccc--eeEEEecCCCCEeeeecCCceeEEEecc
Confidence 4444 7899999999999999999999999999877554442 12222 3467999999999999999999999999
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG 146 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 146 (154)
.|.+++.+.- .. .+ +...|+|.+.+..+..-.+.
T Consensus 96 ~gs~l~rirf-~s-pv-~~~q~hp~k~n~~va~~~~~ 129 (405)
T KOG1273|consen 96 KGSPLKRIRF-DS-PV-WGAQWHPRKRNKCVATIMEE 129 (405)
T ss_pred CCCceeEEEc-cC-cc-ceeeeccccCCeEEEEEecC
Confidence 9999988873 22 22 56788887666555544433
No 172
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.66 E-value=3.8e-15 Score=104.08 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=112.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|+.-+.|.+|+....+. +..+.+|.+.|.++.++.+|+++++.|.|.++++|++++.+..... .-++..
T Consensus 148 i~~gsv~~~iivW~~~~dn~----p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~----~fgHsa 219 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNK----PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT----GFGHSA 219 (967)
T ss_pred EEeccccccEEEEeccccCC----cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcc----cccccc
Confidence 36788889999999984443 4467799999999999999999999999999999999998776521 122234
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.+.+++.|. ++++++.|-+.++|+.. ++.+..+..|....+ ..++..+ +.-.+++++.|+.+++||+
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~i-w~~~~~~-~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGI-WKIAVPI-GVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcce-eEEEEcC-CceEEEeeccCcchhhhhh
Confidence 6678888887 99999999999999654 444457776666555 7788887 6678899999999999986
No 173
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.65 E-value=1.9e-14 Score=98.95 Aligned_cols=141 Identities=11% Similarity=0.109 Sum_probs=115.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++.|+..|.+.+|++++++. ...+.++...|+++.=+|--..++.|..+|+|.+++++..+....+.+...
T Consensus 175 IvvGs~~G~lql~Nvrt~K~----v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g----- 245 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKV----VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWG----- 245 (910)
T ss_pred EEEeecCCcEEEEEeccCcE----EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccc-----
Confidence 46789999999999999885 556668899999999999999999999999999999999999888877522
Q ss_pred eEEEEEEcCCCc-EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 81 SSFRAIWGWDDS-CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 81 ~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.+..+.|..||+ .+++|+..|.+.+||++..+.+..+...+.+.+ ....+.| ....+++.+.|..+++|=
T Consensus 246 ~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv-~~~~fl~-~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 246 RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSV-TGATFLP-GEPVLVTAGADNSLKVWV 316 (910)
T ss_pred ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCc-ccceecC-CCceEeeccCCCceeEEE
Confidence 345678999987 556667779999999999888877774343333 3566777 567899999999999884
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=3e-15 Score=98.83 Aligned_cols=129 Identities=17% Similarity=0.228 Sum_probs=89.3
Q ss_pred CeeecCCCcEEEEEccCC---CCCCCC-CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-------ee
Q 038702 1 MATSSTDGTACIWDLRSM---ATDKPE-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-------AM 69 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~---~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-------~~ 69 (154)
|++|+.||++++|+++.. ...... ...+.+|.++|.|+++.+++..+++|+.||+|+.|++.....+ ..
T Consensus 309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl 388 (577)
T KOG0642|consen 309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVL 388 (577)
T ss_pred EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchh
Confidence 579999999999999432 111222 3345599999999999999999999999999999987632221 11
Q ss_pred EeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEec
Q 038702 70 IHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH 132 (154)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (154)
..+...+.. .+..+++++....|++++.||++|.|+.....+ .++........+..+.+.
T Consensus 389 ~~~l~Ghtd--avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 389 SGTLLGHTD--AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred ccceecccc--ceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeec
Confidence 122222222 333567888888899999999999999876655 344433334444455544
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.63 E-value=2.2e-14 Score=89.56 Aligned_cols=148 Identities=17% Similarity=0.226 Sum_probs=105.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccC---CeEEEEEcCCCCEEEEeeCCCeEEEEeccc-cccceeEe--ecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSGVN-FENTAMIH--HNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~~--~~~ 74 (154)
+++.+.+.-|++||..+++... ......|.+ ...+++|+|+|.+|++| ....|+++|+.. ++.-.... ...
T Consensus 126 ~a~ssr~~PIh~wdaftG~lra--Sy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred eeeccccCceeeeecccccccc--chhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcc
Confidence 3667888999999999887522 223335554 44589999999999887 677899999943 33221111 111
Q ss_pred CCCceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEee
Q 038702 75 QTGRWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWT 152 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd 152 (154)
..+..-...+.+|+|-. ..++.++....+-||.-..+.++..+.+|..++ +.++|++ +++.|.+|. .|-.|-.||
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv--ThL~~~e-dGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV--THLQWCE-DGNKLFSGARKDDKILCWD 279 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe--eeEEecc-CcCeecccccCCCeEEEEe
Confidence 11111122245789854 589999999999999888888998888776666 5899999 788888887 578999999
Q ss_pred CC
Q 038702 153 SD 154 (154)
Q Consensus 153 ~~ 154 (154)
+.
T Consensus 280 iR 281 (406)
T KOG2919|consen 280 IR 281 (406)
T ss_pred eh
Confidence 73
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.61 E-value=3.3e-14 Score=96.58 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=102.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCcee--ecccCCeEEEEEcCCC--CEEEEeeCCCeEEEEeccccccceeE------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKV--LSHKRAVHSAYFSPSG--SSLATTSFDDTIGIWSGVNFENTAMI------ 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~------ 70 (154)
++.|..+|+|.+||++......+..... ..|..++..+.|..+. .-|++++.||.|..|+++....+...
T Consensus 258 l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~ 337 (555)
T KOG1587|consen 258 LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK 337 (555)
T ss_pred EEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc
Confidence 5789999999999999876533333333 3799999999997744 45999999999999988743211000
Q ss_pred e----------------------------------------------------ecCCCCceEeEEEEEEcCCCcEEEEEc
Q 038702 71 H----------------------------------------------------HNNQTGRWISSFRAIWGWDDSCIFIGN 98 (154)
Q Consensus 71 ~----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (154)
. +.....+......+.++|=+..++..+
T Consensus 338 ~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 338 KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee
Confidence 0 000000011122345666555444444
Q ss_pred cCCeEEEecCC-CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 99 MTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 99 ~d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.|.+++||... ...++..+..+... ..+++|+|..+..|+++..||.|.+||+
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~--v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDY--VTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred ccceeEeccccCCCCcchhhhhccce--eeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 49999999987 55666666543333 3689999999999999999999999998
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.3e-14 Score=100.36 Aligned_cols=148 Identities=7% Similarity=0.104 Sum_probs=101.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|+++++-..|+|||...... ...+. +....|+++.-+. .|+.+++|..||+|++||.+............++..
T Consensus 1180 Ll~tGd~r~IRIWDa~~E~~----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQV----VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred EEecCCeeEEEEEeccccee----EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCC
Confidence 34556678999999987653 33333 5566777776654 579999999999999999998766443332223333
Q ss_pred eEeEEEEEEcCCCc-EEEEEccCCeEEEecCCCccc--eeEEeCCCcCC-cceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 79 WISSFRAIWGWDDS-CIFIGNMTRTVEVISPAQRRS--VATLQSPYISA-IPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 79 ~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...++.+.+.+.|- .|++|+.+|.|++||++.... ..++..|.... ..+++..|+ +..++++|+. +.|+||+++
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeecc-CCCeeeecCc-ceEEEEecC
Confidence 32234556666554 599999999999999997422 22333333222 236788888 7789999988 999999974
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9.7e-15 Score=96.80 Aligned_cols=122 Identities=15% Similarity=0.216 Sum_probs=92.5
Q ss_pred ceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCC--CcEEEEEccCCeE
Q 038702 26 TKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWD--DSCIFIGNMTRTV 103 (154)
Q Consensus 26 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i 103 (154)
..+.+|.+.|.+++|+.+|.+|++|+.|-.+.|||.-..+....+ .+++...++++.|-|. .+.+++|..|..|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI----~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI----STGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee----ecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 345699999999999999999999999999999998755554443 2334446788888884 6789999999999
Q ss_pred EEecCCCcc----------ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 104 EVISPAQRR----------SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 104 ~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++||+...+ ....+..|...+ -.++..|..+..+-+++.||+|+-+|+
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rV--Kria~~p~~PhtfwsasEDGtirQyDi 177 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRV--KRIATAPNGPHTFWSASEDGTIRQYDI 177 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhh--hheecCCCCCceEEEecCCcceeeecc
Confidence 999998422 222222333333 245666756689999999999999997
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.2e-13 Score=83.31 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=97.9
Q ss_pred CeeecCCCcEEEEEccCCC---CCCC---CCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-------
Q 038702 1 MATSSTDGTACIWDLRSMA---TDKP---EPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT------- 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~---~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~------- 67 (154)
|++|+.+|+|.+..+.+.. ...+ ......+|.++|+.++|. ..+|++++ ||.|+-|..+.....
T Consensus 25 l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lw 101 (325)
T KOG0649|consen 25 LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLW 101 (325)
T ss_pred EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhh
Confidence 5789999999999886421 1111 122234899999999996 45666664 599999987654321
Q ss_pred eeEe--ecCC-CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 68 AMIH--HNNQ-TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 68 ~~~~--~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
.... +... .-..+. .+...|...-+++++-|+.++-||+++|+..+++++|..... ++.--. ....+++|+.
T Consensus 102 e~~~P~~~~~~evPeIN--am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH--~vv~R~-~~~qilsG~E 176 (325)
T KOG0649|consen 102 EVKIPMQVDAVEVPEIN--AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH--SVVGRN-ANGQILSGAE 176 (325)
T ss_pred hhcCccccCcccCCccc--eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee--eeeecc-cCcceeecCC
Confidence 0000 1100 001122 234567766677777899999999999999999999987776 333322 3457889999
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
||++++||+
T Consensus 177 DGtvRvWd~ 185 (325)
T KOG0649|consen 177 DGTVRVWDT 185 (325)
T ss_pred CccEEEEec
Confidence 999999997
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.9e-13 Score=82.50 Aligned_cols=138 Identities=16% Similarity=0.203 Sum_probs=97.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC-----
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ----- 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~----- 75 (154)
+++++.|+.++-||+++++. ...+.+|++.|.++.-......+++|++||++++||.++.+....+.....
T Consensus 129 i~~AgGD~~~y~~dlE~G~i----~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR 204 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLEDGRI----QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR 204 (325)
T ss_pred EEEecCCeEEEEEEecCCEE----EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence 35667899999999999884 455559999999999866666889999999999999999988766643221
Q ss_pred --CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 76 --TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 76 --~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.++. +...+...+++|+ ...+.+|.+++.++...+.-+. ....+.|. ...+++++..+.+.-|.+
T Consensus 205 p~~g~wig----ala~~edWlvCGg-Gp~lslwhLrsse~t~vfpipa---~v~~v~F~---~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 205 PDWGKWIG----ALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIPA---RVHLVDFV---DDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred cccCceeE----EEeccCceEEecC-CCceeEEeccCCCceEEEeccc---ceeEeeee---cceEEEeccccceeeeee
Confidence 222333 3344566776655 5679999999998887776321 11334453 356666776666666643
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=2.2e-13 Score=97.38 Aligned_cols=151 Identities=15% Similarity=0.242 Sum_probs=106.4
Q ss_pred CeeecCCCcEEEEEccCCCCCC--CCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----ee-
Q 038702 1 MATSSTDGTACIWDLRSMATDK--PEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI----HH- 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~----~~- 72 (154)
+++||.||+|++|+.++..... .+..... ...+.+.++.+.+.++.++.++.||.|++.++......... ..
T Consensus 1064 FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~ 1143 (1431)
T KOG1240|consen 1064 FVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIP 1143 (1431)
T ss_pred EEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecc
Confidence 5899999999999998744321 1111222 25678999999999999999999999999999873322111 11
Q ss_pred -cCCCCceEeEEEEEEc-CCCc-EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 73 -NNQTGRWISSFRAIWG-WDDS-CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 73 -~~~~~~~~~~~~~~~~-~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
....+. +..+. +|. ..+. .++.+..-+.|..||++....+..++.........+++.+| .++.++.|+..|.+-
T Consensus 1144 n~~~~g~-vv~m~-a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~ 1220 (1431)
T KOG1240|consen 1144 NLKKDGV-VVSMH-AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLV 1220 (1431)
T ss_pred cccCCCc-eEEee-cccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEE
Confidence 111222 22221 222 2333 78888889999999999887776666544445557899999 778999999999999
Q ss_pred EeeCC
Q 038702 150 VWTSD 154 (154)
Q Consensus 150 ~wd~~ 154 (154)
+||+.
T Consensus 1221 lWDLR 1225 (1431)
T KOG1240|consen 1221 LWDLR 1225 (1431)
T ss_pred EEEee
Confidence 99973
No 182
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=1.2e-12 Score=81.51 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=84.0
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCe-EEEEeccccccceeEeecCCCCceEeE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDT-IGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
|-.-|+|+|-|+...... .+..+..|.+.|.|++.+.+|..+|++|..|+ |+|||.++++....+...... ...
T Consensus 155 g~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~---A~i 229 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR---ADI 229 (346)
T ss_pred CCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch---heE
Confidence 345588999998776542 13445599999999999999999999999987 899999999988877654432 245
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
++++|+|+..+|++++..|+++||.++.
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 6789999999999999999999998874
No 183
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.9e-13 Score=84.78 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=85.6
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCceEeEEEEEEcC--CCcEEEEEccCCeEEEe
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRWISSFRAIWGW--DDSCIFIGNMTRTVEVI 106 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~i~i~ 106 (154)
+|.+-|.++.|.+.|+.+++++.|++++|||.+.....-.. .+-..++. ...++.|.+ -|+.+++++.|+++.||
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~--Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG--SIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC--cEEEEEecCccccceEEEEecCCceeee
Confidence 89999999999999999999999999999998654433211 11112221 345677865 38999999999999999
Q ss_pred cCC---------CccceeEEeCCCcCCcceEEEecCC-CccEEEEEcCCCeEEEeeC
Q 038702 107 SPA---------QRRSVATLQSPYISAIPCRFHAHPH-QVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 107 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~~wd~ 153 (154)
.-. ......++......+ .++.|.|. .+-.+++++.||.++||+.
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV--~DV~FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSV--TDVKFAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred eecccccccccceeEEEEEeecCCcce--eEEEecchhcceEEEEeccCcEEEEEec
Confidence 752 122233444333333 57778774 3456899999999999974
No 184
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.58 E-value=1.8e-13 Score=89.93 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=87.0
Q ss_pred ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 29 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
.+|.+....++.+|+.+++++++.|+.+++|+ ..+......... .+-++.|+|.| .++.|...|...+.|.
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d------~~~~~~fhpsg-~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED------PAECADFHPSG-VVAVGTATGRWFVLDT 435 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC------ceeEeeccCcc-eEEEeeccceEEEEec
Confidence 46889999999999999999999999999999 222221111111 12256899999 9999999999999999
Q ss_pred CCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 109 AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++...+..-. . ...+ ..++++| ++.+|+.|+.|+.|++|-++
T Consensus 436 e~~~lv~~~~-d-~~~l-s~v~ysp-~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 436 ETQDLVTIHT-D-NEQL-SVVRYSP-DGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred ccceeEEEEe-c-CCce-EEEEEcC-CCCEEEEecCCCeEEEEEEC
Confidence 9855544333 2 3333 6789999 89999999999999999763
No 185
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=2e-13 Score=86.92 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=108.2
Q ss_pred eeecCC--CcEEEEEccCCCCCCC---CCceee--cccCCeEEEEEcCC--CCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 2 ATSSTD--GTACIWDLRSMATDKP---EPTKVL--SHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 2 ~~~~~d--~~v~vw~~~~~~~~~~---~~~~~~--~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
++|+.. ..+++||+...++... .+.... .-+-.++++.|-+. ...|++++.-+.+++||.+.++.+.....
T Consensus 165 a~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd 244 (412)
T KOG3881|consen 165 ATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD 244 (412)
T ss_pred ecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec
Confidence 568888 7899999987532100 001111 23445678899886 78999999999999999998877765443
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeE-EeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVAT-LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
..+.+ +. ++...|+++++++|..-+.+..||++.++.+.. +.+...++ .++..+| ...++++++-|+.++|+
T Consensus 245 ~~E~~--is--~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsi--rsih~hp-~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 245 FLENP--IS--STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSI--RSIHCHP-THPVLASCGLDRYVRIH 317 (412)
T ss_pred cccCc--ce--eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCc--ceEEEcC-CCceEEeeccceeEEEe
Confidence 33322 22 445689999999999999999999999988776 55443333 5778888 66899999999999999
Q ss_pred eCC
Q 038702 152 TSD 154 (154)
Q Consensus 152 d~~ 154 (154)
|++
T Consensus 318 D~k 320 (412)
T KOG3881|consen 318 DIK 320 (412)
T ss_pred ecc
Confidence 975
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.4e-13 Score=86.30 Aligned_cols=144 Identities=12% Similarity=0.151 Sum_probs=99.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeeccc-CCeEEEEEcCCCCEEEEeeC----CCeEEEEeccccccc-eeEeecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHK-RAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNFENT-AMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~----d~~v~~~~~~~~~~~-~~~~~~~ 74 (154)
+.+|+.||+|++||++...... .....++. .+..+++.+...+.+++|+. +-.|.+||++..+.+ ..+..
T Consensus 87 v~s~ssDG~Vr~wD~Rs~~e~a--~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-- 162 (376)
T KOG1188|consen 87 VISCSSDGTVRLWDIRSQAESA--RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-- 162 (376)
T ss_pred eEEeccCCeEEEEEeecchhhh--heeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh--
Confidence 4689999999999999866421 22223454 56777777778888888865 668999999987763 22221
Q ss_pred CCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCcc----ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 75 QTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRR----SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
.+..-+. +++|+|+ .++|++|+.||.|.+||++... ++.++. + ...+ ..+.|....-..|.+-+...+..
T Consensus 163 SH~DDVT--~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI-~~igw~~~~ykrI~clTH~Etf~ 237 (376)
T KOG1188|consen 163 SHNDDVT--QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSI-HLIGWLSKKYKRIMCLTHMETFA 237 (376)
T ss_pred hccCcce--eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-c-ccee-eeeeeecCCcceEEEEEccCcee
Confidence 1222233 5679995 6799999999999999998542 233333 2 2222 46778774444677778888999
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
+|++
T Consensus 238 ~~el 241 (376)
T KOG1188|consen 238 IYEL 241 (376)
T ss_pred EEEc
Confidence 9987
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.57 E-value=7.3e-13 Score=87.77 Aligned_cols=136 Identities=24% Similarity=0.308 Sum_probs=102.0
Q ss_pred cCCCcEEEEEccC-CCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 5 STDGTACIWDLRS-MATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 5 ~~d~~v~vw~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
..|+.+++|+... ... ......|...|..++|+|++..+++++. |+.+++|+............ +.. .+
T Consensus 131 ~~d~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~v 201 (466)
T COG2319 131 SLDGTVKLWDLSTPGKL----IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG---HTD--PV 201 (466)
T ss_pred CCCccEEEEEecCCCeE----EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc---CCC--ce
Confidence 4489999999987 332 4555689999999999999998888885 99999999988444433322 122 23
Q ss_pred EEEEEcCCCc-EEEEEccCCeEEEecCCCcccee-EEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 83 FRAIWGWDDS-CIFIGNMTRTVEVISPAQRRSVA-TLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..++|+|++. .+++++.|+.+++||...+..+. .+..|.... .. .|+| ++.++++++.|+.+++||+
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~--~~~~-~~~~~~~~~~d~~~~~~~~ 270 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS--SFSP-DGSLLASGSSDGTIRLWDL 270 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE--eECC-CCCEEEEecCCCcEEEeee
Confidence 4567889988 55555999999999988777776 465554433 22 7888 5578889999999999986
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=7.6e-14 Score=89.45 Aligned_cols=124 Identities=16% Similarity=0.118 Sum_probs=98.1
Q ss_pred eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc---eeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEE
Q 038702 28 VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVE 104 (154)
Q Consensus 28 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 104 (154)
+.+|.+.|.++.|+.++++|++|+.|..+++|++...-.. +.+... .+.+...+++++|.....++++|..+++|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3479999999999999999999999999999998753211 112111 122223577889999999999999999999
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..|+++.+.+..+...........+..+| ..+.|++.+.++.|.+||.
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~ 178 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDN 178 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEec
Confidence 99999999888876443333346788999 4689999999999999996
No 189
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=1.1e-13 Score=91.42 Aligned_cols=144 Identities=14% Similarity=0.152 Sum_probs=98.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-----cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccc--------
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-----SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT-------- 67 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~-------- 67 (154)
+.|-.-|.|.+.|....+ ..+++ -.+..++|++|-| +...|+++-.+|.+.+||.+-....
T Consensus 189 lIGf~tGqvq~idp~~~~-----~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 189 LIGFTTGQVQLIDPINFE-----VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred EEeeccCceEEecchhhH-----HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 344455667766665422 11111 2357899999999 4567777888999999976421100
Q ss_pred ------eeEe---ec--CCCCce----EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEec
Q 038702 68 ------AMIH---HN--NQTGRW----ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH 132 (154)
Q Consensus 68 ------~~~~---~~--~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (154)
.+.. +. ++...+ ......+|+|||++||+.+.||.+||||..+.+++..++.-..+- .+++|+
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGL--LCvcWS 341 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGL--LCVCWS 341 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccce--EEEEEc
Confidence 0000 00 000000 012245899999999999999999999999998888777554444 578999
Q ss_pred CCCccEEEEEcCCCeEEEeeC
Q 038702 133 PHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 133 ~~~~~~l~~~~~d~~i~~wd~ 153 (154)
| |+.+|++|+.|..|.||.+
T Consensus 342 P-DGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 342 P-DGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred C-CccEEEecCCcceEEEEEe
Confidence 9 9999999999999999975
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.55 E-value=6.7e-14 Score=92.67 Aligned_cols=138 Identities=18% Similarity=0.270 Sum_probs=100.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+.++.||.+.+.+-.. +. ......|.+.+.+-.|+|+|.-|+++++||.|++|.-..+-+...... +.
T Consensus 78 ~~i~s~DGkf~il~k~~-rV----E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~----~~-- 146 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSA-RV----ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN----EE-- 146 (737)
T ss_pred EEEEcCCceEEEecccc-hh----hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhc----Cc--
Confidence 46788899988876432 21 333448999999999999999999999999999998654433322221 11
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.+++|.|+..-++.+. .+.+.|-.+.....+...+.|..-+ .++.|+| .++++++|+.|...++||-
T Consensus 147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGii--L~~~W~~-~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLV--LSLSWST-QSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred eeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEE--EEeecCc-cccceeecCCceeEEeecc
Confidence 345789999877655543 3456666666665566677665433 6889999 7899999999999999995
No 191
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=2.7e-12 Score=80.03 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=96.0
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEE-eeCCCeEEEEeccccccc--eeE-eecCCCCceEe
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLAT-TSFDDTIGIWSGVNFENT--AMI-HHNNQTGRWIS 81 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~~~~~~~~~~--~~~-~~~~~~~~~~~ 81 (154)
..+.|.||.+.++-. ..........+..+++++=..+...|+. |-.-|.|.+-|+...... ..+ .|.. .+.
T Consensus 111 l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s----~Ia 185 (346)
T KOG2111|consen 111 LENKIYVYTFPDNPK-LLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS----DIA 185 (346)
T ss_pred ecCeEEEEEcCCChh-heeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC----cee
Confidence 356677887764332 1111122222333444333333344444 445789999999876652 332 3433 233
Q ss_pred EEEEEEcCCCcEEEEEccCCe-EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRT-VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+++.+.+|..+|+++..|+ |||||..+++.+.+++.........+++|+| +..+|+.++.-|++.++.+
T Consensus 186 --cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 186 --CVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred --EEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEe
Confidence 4567889999999999997 7999999999999998766666668899999 8899999999999999876
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.53 E-value=1.9e-12 Score=88.19 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=99.5
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee-----------------
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM----------------- 69 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~----------------- 69 (154)
+..+.+||...+.. ...+.+|++.|.+++|+.+|..|++|+.|..|.+|+..-......
T Consensus 32 g~rlliyD~ndG~l----lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~ 107 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGTL----LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQ 107 (1081)
T ss_pred CCEEEEEeCCCccc----ccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHH
Confidence 45699999998875 555669999999999999999999999999999998653211100
Q ss_pred --------Eee-------cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe--CCCcCCcceEEEec
Q 038702 70 --------IHH-------NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ--SPYISAIPCRFHAH 132 (154)
Q Consensus 70 --------~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 132 (154)
+.. -.......++.+++|..||++++.|-.+|+|.+-+-. ++....+. +.....+ ++++|+
T Consensus 108 LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspi-wsi~~~ 185 (1081)
T KOG1538|consen 108 LASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPI-WSICWN 185 (1081)
T ss_pred hhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCc-eEEEec
Confidence 000 0011223456678999999999999999999988654 33333333 2233333 788998
Q ss_pred CCCc----cEEEEEcCCCeEEEeeCC
Q 038702 133 PHQV----GTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 133 ~~~~----~~l~~~~~d~~i~~wd~~ 154 (154)
|..+ +.++......++.++.++
T Consensus 186 p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 186 PSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred CCCCCCccceEEEEeccceeEEEEec
Confidence 8533 367777777788777653
No 193
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.53 E-value=3.6e-12 Score=84.47 Aligned_cols=140 Identities=26% Similarity=0.346 Sum_probs=99.2
Q ss_pred eeecC-CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 2 ATSST-DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 2 ~~~~~-d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
++++. |+.+++|+...... ...+.+|...|.+++|+|++. .+++++.|+.+++||........... ..+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~ 244 (466)
T COG2319 171 ASGSSLDGTIKLWDLRTGKP----LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL--SGHSDS 244 (466)
T ss_pred EecCCCCCceEEEEcCCCce----EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec--CCCCcc
Confidence 34554 99999999987442 333447999999999999988 55555899999999877444333111 111111
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. +. .|+|++.++++++.|+.+++|+.+.... +..+..| ...+ ..+.+.| ++..+++++.|+.+.+||.
T Consensus 245 ~--~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~v-~~~~~~~-~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 245 V--VS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-SSSV-LSVAFSP-DGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred e--eE-eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC-CccE-EEEEECC-CCCEEEEeeCCCcEEEEEc
Confidence 1 11 6899998899999999999999987665 4444334 2333 5678998 6777777888888999976
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.3e-13 Score=91.58 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=101.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeE-------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMI------- 70 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~------- 70 (154)
|++||+|-.+.|||....+. ...+. +|...|.+++|-| +.+.+++|..|..|+++|+...+....-
T Consensus 65 L~SGSDD~r~ivWd~~~~Kl----lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~ 140 (758)
T KOG1310|consen 65 LASGSDDTRLIVWDPFEYKL----LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETT 140 (758)
T ss_pred EeecCCcceEEeecchhcce----eeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchh
Confidence 68999999999999986552 22222 9999999999999 5678999999999999999863322111
Q ss_pred ----eecCCCCceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEE-------eC-CCcCCcceEEEecCCCcc
Q 038702 71 ----HHNNQTGRWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATL-------QS-PYISAIPCRFHAHPHQVG 137 (154)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~ 137 (154)
.|... +. .++..|++ ..+.+++.||+++-+|++.......- .. +..-.-.-++..+|.++.
T Consensus 141 ~~~~cht~r----VK--ria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~ 214 (758)
T KOG1310|consen 141 RCWSCHTDR----VK--RIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY 214 (758)
T ss_pred hhhhhhhhh----hh--heecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence 11111 11 34556766 78899999999999999864221110 00 011111235778898999
Q ss_pred EEEEEcCCCeEEEeeC
Q 038702 138 TLAGATGGGQVYVWTS 153 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~ 153 (154)
+|+.|+.|--.++||.
T Consensus 215 ~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 215 YLAVGGSDPFARLYDR 230 (758)
T ss_pred eEEecCCCchhhhhhh
Confidence 9999999999999983
No 195
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=8.1e-13 Score=79.71 Aligned_cols=101 Identities=13% Similarity=0.239 Sum_probs=72.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
+.|..++.|.+||++. + ....+ +...+..+.|+|+|++++.++. .|.+.+||.++.+......+..
T Consensus 77 i~g~~~~~v~lyd~~~-~-----~i~~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~---- 145 (194)
T PF08662_consen 77 IYGSMPAKVTLYDVKG-K-----KIFSF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD---- 145 (194)
T ss_pred EEccCCcccEEEcCcc-c-----EeEee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc----
Confidence 3455678999999962 2 22222 3567789999999999999875 4679999999766655443322
Q ss_pred eEeEEEEEEcCCCcEEEEEcc------CCeEEEecCCCccceeEE
Q 038702 79 WISSFRAIWGWDDSCIFIGNM------TRTVEVISPAQRRSVATL 117 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~ 117 (154)
+..++|+|+|++++++.. |+.++||+.. |+.+...
T Consensus 146 ---~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 146 ---ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ---EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 346799999999999874 6788999984 5555443
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.51 E-value=7.4e-13 Score=84.76 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=88.5
Q ss_pred ccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccce------eEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeE
Q 038702 31 HKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTA------MIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTV 103 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 103 (154)
...++.++.|.++.. .+++|+.|..|++|.+....... .......+...+. .+.|+|+|..|++|+.+|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN--~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVN--VVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeE--EEEEcCCcCeeeecCCCceE
Confidence 356899999999766 99999999999999987643321 1222333444455 45799999999999999999
Q ss_pred EEecCC--------C--------ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 104 EVISPA--------Q--------RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 104 ~i~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+|... + ....+.+.+|...+ ..++|.| ++.++++++.|..+++||+
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~di--ydL~Ws~-d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDI--YDLAWSP-DSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccch--hhhhccC-CCceeeeeeccceEEEEEe
Confidence 999765 2 11223444554444 4789999 8899999999999999997
No 197
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.51 E-value=8e-13 Score=82.41 Aligned_cols=142 Identities=18% Similarity=0.292 Sum_probs=103.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCce-eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc----ceeEeecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTK-VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN----TAMIHHNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~----~~~~~~~~~ 75 (154)
+|.+-....|.||.....+.- .... +..|...|+.++|+|..+.|++++.|..-++|....+.. +.++.+..
T Consensus 25 iAv~~~~~evhiy~~~~~~~w--~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNr- 101 (361)
T KOG1523|consen 25 IAVSPNNHEVHIYSMLGADLW--EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINR- 101 (361)
T ss_pred EEeccCCceEEEEEecCCCCc--eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEecc-
Confidence 356667778999998765421 1333 348999999999999999999999999999999854322 23333333
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce---eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV---ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
....+.|+|.++.+++|+....|.||-.+..+.- +.++.+.. ....++.|+| ++-+|++|+.|+..+++.
T Consensus 102 -----AAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPir-Stv~sldWhp-nnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 102 -----AATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIR-STVTSLDWHP-NNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred -----ceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccc-cceeeeeccC-CcceecccccCcceeEEE
Confidence 2346789999999999999999999987754322 11221222 2336899999 778999999999999874
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.4e-12 Score=87.73 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=88.3
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC---CeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
+..|.+||..... ...+..|...+.+.+|+|+|+.++..+.+ ..|.+||+.+++.......... ..
T Consensus 183 ~~~i~i~d~dg~~-----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~------~~ 251 (429)
T PRK01742 183 PYEVRVADYDGFN-----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH------NG 251 (429)
T ss_pred eEEEEEECCCCCC-----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc------cC
Confidence 5689999986544 34445788889999999999999887654 3699999987654333221111 11
Q ss_pred EEEEcCCCcEEEEEc-cCCeEEEe--cCCCccceeEEeCCCcCCcceEEEecCCCccEEEE-EcCCCeEEEeeC
Q 038702 84 RAIWGWDDSCIFIGN-MTRTVEVI--SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG-ATGGGQVYVWTS 153 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~-~d~~i~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~~wd~ 153 (154)
..+|+|+|+.|+.+. .+|.+.|| |+.+++. ..+..+.. ......|+| +++.|+. +..++...+|++
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~--~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAG--NNTEPSWSP-DGQSILFTSDRSGSPQVYRM 321 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCC--CcCCEEECC-CCCEEEEEECCCCCceEEEE
Confidence 468999999888764 67765555 6655553 44443322 225689999 6776554 446777888764
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=1e-11 Score=81.05 Aligned_cols=144 Identities=12% Similarity=0.098 Sum_probs=91.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++...++.|++|++.+... ....+...+.+....+.++|++++|++++ .++.|.+|++...............+
T Consensus 6 ~~~~~~~~I~~~~~~~~g~--l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~--- 80 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGA--LTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG--- 80 (330)
T ss_pred EEcCCCCCEEEEEECCCCc--eeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC---
Confidence 4557789999999964321 11334444556778899999999887765 47889999987322222222111111
Q ss_pred eEEEEEEcCCCcEEEEEc-cCCeEEEecCCC-cc---ceeEEeCCCcCCcceEEEecCCCccEE-EEEcCCCeEEEeeCC
Q 038702 81 SSFRAIWGWDDSCIFIGN-MTRTVEVISPAQ-RR---SVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD 154 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~~wd~~ 154 (154)
....++++|+++++++++ .++.|.+|++.+ +. .+..+.+ . ..+..++++| +++++ ++...++.|.+||++
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~--~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-L--EGCHSANIDP-DNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-C--CcccEeEeCC-CCCEEEEeeCCCCEEEEEEEC
Confidence 123578999999888776 478999999864 22 2222221 1 1234577899 66665 555577999999973
No 200
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.50 E-value=1.1e-12 Score=81.05 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=99.5
Q ss_pred CCCcEEEEEccCCCCC--CCCCc---eeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEecccccc----ceeEeecCC
Q 038702 6 TDGTACIWDLRSMATD--KPEPT---KVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFEN----TAMIHHNNQ 75 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~--~~~~~---~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~----~~~~~~~~~ 75 (154)
.+-.+|+|.+...... ....+ +...+..++++..|+. +.+++.+++-|-++.+||++++.. ...+.|..
T Consensus 119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK- 197 (364)
T KOG0290|consen 119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK- 197 (364)
T ss_pred ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCc-
Confidence 3457999998743221 10011 1124678999999988 788999999999999999998733 23344544
Q ss_pred CCceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCccceeEEeC-CCcCCcceEEEecCCCccEEEEEcCCC-eEEEee
Q 038702 76 TGRWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGG-QVYVWT 152 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~~wd 152 (154)
.++.++|...+ ..+++.+.||.+|+||++..+--..+.. +.....-..++|++.+.+++++-..|. .|.+.|
T Consensus 198 -----EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 198 -----EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred -----ceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 25577888755 5889999999999999998765444432 221222368899998999998877664 566666
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 273 i 273 (364)
T KOG0290|consen 273 I 273 (364)
T ss_pred e
Confidence 5
No 201
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.5e-12 Score=87.24 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=41.0
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC--EEEEeeCCCeEEEEec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS--SLATTSFDDTIGIWSG 61 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~~~~~ 61 (154)
|++|+.||+|+||.+.++. +.......+.|.|++|+|.+. .|+++ ....+.+.+.
T Consensus 415 lasGsdDGtvriWEi~TgR-----cvr~~~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp 471 (733)
T KOG0650|consen 415 LASGSDDGTVRIWEIATGR-----CVRTVQFDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNP 471 (733)
T ss_pred eeecCCCCcEEEEEeecce-----EEEEEeecceeEEEEecCCCCceeEEEE-ecCceEEeCc
Confidence 6899999999999999987 666667778999999999665 34443 3333555443
No 202
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.48 E-value=1.3e-11 Score=80.46 Aligned_cols=151 Identities=11% Similarity=0.093 Sum_probs=91.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCC-Cc-eeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEecccc--ccce--eEee-c
Q 038702 2 ATSSTDGTACIWDLRSMATDKPE-PT-KVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNF--ENTA--MIHH-N 73 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~-~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~--~~~~--~~~~-~ 73 (154)
++...++.|.+||+.+....... .. ...........+.|+|++++++++.. +++|.+|++... .... .... .
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 45667799999999763321000 00 01112344678999999999988876 999999999742 2111 1111 0
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEcc-CCeEEEecCCCccceeEEeCC-CcCCcceEEEecCCCccEEEEEc-CCCeEEE
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGNM-TRTVEVISPAQRRSVATLQSP-YISAIPCRFHAHPHQVGTLAGAT-GGGQVYV 150 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~ 150 (154)
...........+.++|++++++++.. ++.|.+|++.+......+.++ .....+..+.++| ++++|+++. .+++|.+
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~-dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH-SGKYLIAAGQKSHHISV 300 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC-CCCEEEEEEccCCcEEE
Confidence 10000112234678999999988864 689999998654322222211 1112335689999 677776655 5899999
Q ss_pred eeC
Q 038702 151 WTS 153 (154)
Q Consensus 151 wd~ 153 (154)
|++
T Consensus 301 ~~~ 303 (330)
T PRK11028 301 YEI 303 (330)
T ss_pred EEE
Confidence 976
No 203
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=9.7e-12 Score=79.02 Aligned_cols=140 Identities=19% Similarity=0.315 Sum_probs=97.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccc-----------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENT----------- 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~----------- 67 (154)
++.+..|-+|++||-.... +..+. .....|+|++|-|. +..|+.|+..| |.+|........
T Consensus 113 fava~nddvVriy~ksst~-----pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~ 186 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTC-----PTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHH 186 (445)
T ss_pred hhhhccCcEEEEeccCCCC-----CceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccc
Confidence 4678889999999987632 22222 44568999999995 45777777776 889976532211
Q ss_pred -eeEeecCCCCceEeEEEEEEcCCCcEEEEEcc-CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 68 -AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 68 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
.++.+.+ ...+..+.|.+||..+++++. |..|+|||..++..+..... ..+.. .-+.|+| ++.+|..++-|
T Consensus 187 ~qvl~~pg----h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~-slLkwSP-dgd~lfaAt~d 259 (445)
T KOG2139|consen 187 LQVLQDPG----HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGF-SLLKWSP-DGDVLFAATCD 259 (445)
T ss_pred hhheeCCC----CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCce-eeEEEcC-CCCEEEEeccc
Confidence 1111111 134457899999999999884 56899999998876654421 22222 4589999 88999999999
Q ss_pred CeEEEeeC
Q 038702 146 GQVYVWTS 153 (154)
Q Consensus 146 ~~i~~wd~ 153 (154)
+..++|+.
T Consensus 260 avfrlw~e 267 (445)
T KOG2139|consen 260 AVFRLWQE 267 (445)
T ss_pred ceeeeehh
Confidence 99999953
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=2.3e-12 Score=91.36 Aligned_cols=146 Identities=15% Similarity=0.194 Sum_probs=101.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCC--eEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEe--ecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRA--VHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIH--HNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~--~~~~ 75 (154)
+++|..||.|++||.+...... .......|... |..+.+.++|- .|++|+.||.|.+||++......... ...+
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds-~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDS-LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred EEEeecCCceEEeecccCCccc-cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 5789999999999998755321 12233378776 99999988765 59999999999999999853322221 1111
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe------CCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ------SPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
.+.... .+..++....+++|+. +.|+||++.. +.+..++ ++..+.. .+++||| ..-+++.|+.|.+|.
T Consensus 1303 yGs~lT--al~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~-scL~FHP-~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1303 YGSALT--ALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSV-SCLAFHP-HRLLLAAGSADSTVS 1376 (1387)
T ss_pred cCccce--eeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCc-ceeeecc-hhHhhhhccCCceEE
Confidence 122223 3456778889999988 9999999863 3333332 2233333 6799999 557889999999999
Q ss_pred EeeC
Q 038702 150 VWTS 153 (154)
Q Consensus 150 ~wd~ 153 (154)
+|..
T Consensus 1377 iYs~ 1380 (1387)
T KOG1517|consen 1377 IYSC 1380 (1387)
T ss_pred Eeec
Confidence 9864
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.46 E-value=4.1e-12 Score=79.33 Aligned_cols=148 Identities=17% Similarity=0.096 Sum_probs=107.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|++|+.|..-+||....+..-. ..+.+..+....+++.|+|.++.|++|+....|.+|-.+..+.--+..|.. .....
T Consensus 70 Ivtcs~drnayVw~~~~~~~Wk-ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik-kPirS 147 (361)
T KOG1523|consen 70 IVTCSHDRNAYVWTQPSGGTWK-PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK-KPIRS 147 (361)
T ss_pred eeEccCCCCccccccCCCCeec-cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC-Ccccc
Confidence 5799999999999996544322 245566899999999999999999999999999999887665443222211 11112
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCC-----C-------------ccceeEEeCCCcCCcceEEEecCCCccEEEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPA-----Q-------------RRSVATLQSPYISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (154)
.+.++.|+|++-+|++|+.|+..|+|..- . |+++.++. ..+.....+.|+| .++.|+-.
T Consensus 148 tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~-sG~~lawv 224 (361)
T KOG1523|consen 148 TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSP-SGNRLAWV 224 (361)
T ss_pred ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCC-CCCEeeEe
Confidence 34578999999999999999999998532 1 11222222 2333446789999 88999999
Q ss_pred cCCCeEEEeeC
Q 038702 143 TGGGQVYVWTS 153 (154)
Q Consensus 143 ~~d~~i~~wd~ 153 (154)
+.|..+.+=|.
T Consensus 225 ~Hds~v~~~da 235 (361)
T KOG1523|consen 225 GHDSTVSFVDA 235 (361)
T ss_pred cCCCceEEeec
Confidence 99999887653
No 206
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.6e-11 Score=85.15 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=108.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++|..||.|.+|.-.........+..+-=|.++|.++.|+++|.+|++|+..+-+.+|.+.+++ ...++....
T Consensus 220 ~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs----- 293 (792)
T KOG1963|consen 220 LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS----- 293 (792)
T ss_pred EEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC-----
Confidence 47889999999997543122122233333689999999999999999999999999999999988 444443332
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCC---------cCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY---------ISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
....+.++||+.+.+....|+.|.+....+.+...++.+.. .......++++| ..+.++..+..|.|.+|
T Consensus 294 ~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~y 372 (792)
T KOG1963|consen 294 PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFY 372 (792)
T ss_pred eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEE
Confidence 34467899999999999999999998876665554444321 123346688888 66788888999999999
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
|+
T Consensus 373 dl 374 (792)
T KOG1963|consen 373 DL 374 (792)
T ss_pred ec
Confidence 87
No 207
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.45 E-value=5.1e-12 Score=86.14 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=97.8
Q ss_pred CeeecCCCcEEEEEccCCCCCC----CCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc-ccccceeEeecCC
Q 038702 1 MATSSTDGTACIWDLRSMATDK----PEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFENTAMIHHNNQ 75 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~ 75 (154)
++.|+++|.|.-=+-....... ........|.++|+++.++|=+..++..+.|.++++|... .......+....
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~- 441 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP- 441 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc-
Confidence 4678999988774433322211 1112334789999999999976655555559999999987 333333222111
Q ss_pred CCceEeEEEEEEcCCC-cEEEEEccCCeEEEecCCCcc--ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 76 TGRWISSFRAIWGWDD-SCIFIGNMTRTVEVISPAQRR--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
...+.++|+|.. ..++++..||.+.+||+.... ++.+.+.. ..+. ..+.|++ .+..|+.|...|++.+|+
T Consensus 442 ----~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l-~~~~~s~-~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 442 ----DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPAL-TRVRWSP-NGKLLAVGDANGTTHILK 514 (555)
T ss_pred ----ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-cccc-ceeecCC-CCcEEEEecCCCcEEEEE
Confidence 135578999975 577888889999999998543 34443322 2233 5567777 789999999999999998
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 515 l 515 (555)
T KOG1587|consen 515 L 515 (555)
T ss_pred c
Confidence 7
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=9.2e-11 Score=77.34 Aligned_cols=141 Identities=17% Similarity=0.171 Sum_probs=92.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCC-eEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRA-VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
++-..++.|.+.|..+.+ .......... -..+.|+|+|+++++++.||.|.++|+.+.+.........
T Consensus 10 V~~~~~~~v~viD~~t~~-----~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~------ 78 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNK-----VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG------ 78 (369)
T ss_dssp EEEGGGTEEEEEETTT-S-----EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS------
T ss_pred EEecCCCEEEEEECCCCe-----EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC------
Confidence 455678999999998866 3444433333 3457899999999999999999999999998776654433
Q ss_pred eEEEEEEcCCCcEEEEEc-cCCeEEEecCCCccceeEEeCCCc-----CCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGN-MTRTVEVISPAQRRSVATLQSPYI-----SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....++++++|+++++++ ..+.+.++|.++.+.++.+..... ......+..+|....++++--.-+.|.+-|.
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 234678899999998776 678999999999999988874321 1222455556645445665555577766663
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.42 E-value=1.1e-13 Score=95.67 Aligned_cols=113 Identities=20% Similarity=0.294 Sum_probs=93.3
Q ss_pred eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEe
Q 038702 28 VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVI 106 (154)
Q Consensus 28 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 106 (154)
+.+|...|+|+.|...|.++++|+.|..++||..++..+..... |... + ..++.+.+..++++++.|..|++|
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d----i--tdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD----I--TDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccc----c--chhccchhhhhhhhcccCceEEEE
Confidence 44799999999999999999999999999999998887765442 3221 2 244556677899999999999999
Q ss_pred cCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 107 SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.++.++..+.+|...+ ++++|+| .. +.+.||++++||-
T Consensus 260 rl~~~~pvsvLrghtgav--taiafsP-~~----sss~dgt~~~wd~ 299 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAV--TAIAFSP-RA----SSSDDGTCRIWDA 299 (1113)
T ss_pred ecCCCchHHHHhccccce--eeeccCc-cc----cCCCCCceEeccc
Confidence 999999999999887666 5789998 32 6789999999985
No 210
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.40 E-value=1e-12 Score=91.17 Aligned_cols=143 Identities=18% Similarity=0.204 Sum_probs=95.8
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC-CCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ-TGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~ 79 (154)
++++|.|..|++|.++.+.. ...+.+|++.|++++|+|-. +.+.||++++||.+-......-..... .+..
T Consensus 247 iaaaS~D~vIrvWrl~~~~p----vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~ 318 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGAP----VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDL 318 (1113)
T ss_pred hhhcccCceEEEEecCCCch----HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccc
Confidence 46899999999999999874 44455999999999999955 778999999999882111100000000 0000
Q ss_pred Ee------------------------EEEEEEcCCC-----------cEEEEEccCCeEEEecCCCccceeEEeCCCcCC
Q 038702 80 IS------------------------SFRAIWGWDD-----------SCIFIGNMTRTVEVISPAQRRSVATLQSPYISA 124 (154)
Q Consensus 80 ~~------------------------~~~~~~~~~~-----------~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 124 (154)
+. .-.++|.... .+.+++-.+-.+.+|++.++..++.+.+|....
T Consensus 319 ~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~ 398 (1113)
T KOG0644|consen 319 VDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEV 398 (1113)
T ss_pred eeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccce
Confidence 00 0001121111 233334445567888988998888887776665
Q ss_pred cceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 125 IPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .+.+||-+..+..++++||...|||+
T Consensus 399 y--vLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 399 Y--VLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred e--eeeecCCCcHhhhhccCCCceEeeec
Confidence 4 67889988888889999999999996
No 211
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=1.7e-11 Score=82.03 Aligned_cols=147 Identities=7% Similarity=0.021 Sum_probs=102.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC------C
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN------Q 75 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~------~ 75 (154)
..++....|+-.++..+.. ...+....+.++++..++...+|++|+.+|.|-.||.++......+.... .
T Consensus 149 y~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 149 YLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG 224 (703)
T ss_pred EEeecCcceEEEEcccccc----ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcc
Confidence 3445555677778877664 33333456899999999988899999999999999999877664443111 1
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
......+..+.|+.+|-.+++|..+|.+.|||+++.+++..-. |........+.|.+.+.+--+.......++|||-
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~ 301 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDE 301 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEecchHHhhhccc
Confidence 1112234467899899999999999999999999999876654 4333334678887743333333344467899985
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.1e-10 Score=74.40 Aligned_cols=136 Identities=19% Similarity=0.250 Sum_probs=86.2
Q ss_pred eeecCCCcEEEEEccCCCCCCC-------CCceee---cccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccccceeE
Q 038702 2 ATSSTDGTACIWDLRSMATDKP-------EPTKVL---SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTAMI 70 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~-------~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~~~ 70 (154)
+.|+..| |.+|.......... ...++. +| .+|++++|+++|..+++++. |..|.+||..++......
T Consensus 157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence 4455544 88998754211000 011222 34 68999999999999999886 678999999987766544
Q ss_pred eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC-CccceeEEeCCCcCCcceEEEecCCCccE-EEEEcCCCeE
Q 038702 71 HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGT-LAGATGGGQV 148 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i 148 (154)
.... .+ ..-+.|+||+.+|+++.-|+..++|+.. +....+-..+. . .+...+|+| .+.+ |.+.+..-.+
T Consensus 235 ~~gl-gg----~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs-g--rvqtacWsp-cGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 235 PKGL-GG----FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS-G--RVQTACWSP-CGSFLLFACSGSPRL 305 (445)
T ss_pred ccCC-Cc----eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC-C--ceeeeeecC-CCCEEEEEEcCCceE
Confidence 2211 11 1135899999999999999999999554 33333333222 2 335678999 5554 4444444333
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.38 E-value=4.6e-12 Score=82.66 Aligned_cols=135 Identities=14% Similarity=0.187 Sum_probs=103.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce-eEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-MIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-~~~~~~~~~~~ 79 (154)
|++++..|.++--|+..++. ...+..-.+.+..++-+|-...+-.|...|+|.+|.....+... ++.|..+
T Consensus 224 L~~~~~~G~L~Y~DVS~Gkl----Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~---- 295 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKL----VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGP---- 295 (545)
T ss_pred eeecccCCceEEEeechhhh----hHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCC----
Confidence 57889999999999998875 44555667888899999988899999999999999998877763 4455553
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
+-++++.++|+|++|.+.|..++|||++....+.++..++.. ..++++. ..+|+ .+....+.+|
T Consensus 296 --V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a---~~ls~Sq--kglLA-~~~G~~v~iw 359 (545)
T KOG1272|consen 296 --VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPA---SNLSLSQ--KGLLA-LSYGDHVQIW 359 (545)
T ss_pred --cceEEECCCCcEEeecccccceeEeeeccccccceeecCCCc---ccccccc--cccee-eecCCeeeee
Confidence 226688999999999999999999999988877777653322 3355553 33444 4555577887
No 214
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=8e-12 Score=78.96 Aligned_cols=138 Identities=10% Similarity=0.142 Sum_probs=98.4
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc-----ceeEeecCCCCce
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-----TAMIHHNNQTGRW 79 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-----~~~~~~~~~~~~~ 79 (154)
+.+-.|-+-++.++. .+.+..++.|.+++|...++++..|+.+|.|...|++...+ ...+.|...
T Consensus 231 G~sqqv~L~nvetg~------~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ss---- 300 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGH------QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSS---- 300 (425)
T ss_pred cccceeEEEEeeccc------ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcc----
Confidence 344556666666543 33345677899999999999999999999999999987622 122233221
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc---eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS---VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
+..+.. .--++++|++++.+|+|++||++.-++ +.+..+|-......-+-.++ .+..+++++.|...++|.++
T Consensus 301 vtslq~-Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 301 VTSLQI-LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred hhhhhh-hccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecc
Confidence 221111 112578999999999999999997666 88888887665545566677 45678889999999999874
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.35 E-value=2.6e-12 Score=83.80 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=94.7
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
....|..+.|-|.--+|++++..|.++.-|+.+++....+...... +. .++-+|-+..+-+|...|+|.+|...+
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~---~~--vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR---TD--VMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc---cc--hhhcCCccceEEEcCCCceEEecCCCC
Confidence 3456788889888888999999999999999998877655433221 11 245578888999999999999999999
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
.+++..+..|...+ .++++++ ++.+++|.+.|..++|||+.
T Consensus 283 kePLvKiLcH~g~V--~siAv~~-~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 283 KEPLVKILCHRGPV--SSIAVDR-GGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred cchHHHHHhcCCCc--ceEEECC-CCcEEeecccccceeEeeec
Confidence 99988887777666 4789999 89999999999999999983
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=3.5e-11 Score=80.62 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=101.9
Q ss_pred CeeecCCCcEEEEEccCCCCCCCC--CceeecccC-----CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPE--PTKVLSHKR-----AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHN 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~--~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~ 73 (154)
|++|+.+|.|..||.+........ ......|.+ .|+++.|+.+|-.+++|+.+|.+.+||++..++.....|.
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 467888999999999876431100 001112333 4999999999999999999999999999999888877776
Q ss_pred CCCCceEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 74 NQTGRWISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.... ...+.|.+. ...+++ .....++|||-.+|+....+..... ...+++-| ++.++.++..+..+..|
T Consensus 270 ~e~p----i~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~---lND~C~~p-~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 270 YELP----IKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSD---LNDFCFVP-GSGMFFTANESSKMHTY 340 (703)
T ss_pred Cccc----eeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCC---cCceeeec-CCceEEEecCCCcceeE
Confidence 6432 335567654 344544 4456899999999999888763322 25678888 77788888887766544
No 217
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.8e-11 Score=77.38 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=89.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccce---eE-eecCCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTA---MI-HHNNQT 76 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~---~~-~~~~~~ 76 (154)
..|..+|.|..+|++........+...+-|.+.|++++.-. ++++|++++.+|+|++||++..+... .+ +|.+..
T Consensus 268 ~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~ 347 (425)
T KOG2695|consen 268 FNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS 347 (425)
T ss_pred EecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc
Confidence 56889999999999987554444666678999999999877 88999999999999999999876632 22 343322
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
. .+-+...++...+++++.|...|||.++.+.++.+++.+
T Consensus 348 a----~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 348 A----YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred c----ccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 1 122345677788889999999999999999999888744
No 218
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.1e-11 Score=83.30 Aligned_cols=137 Identities=17% Similarity=0.131 Sum_probs=98.0
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
....|++||+..... ..++......|.+++++|.|..|+.++.|+.+..+|+.-...+...- ..+...+. .+
T Consensus 585 Tq~~vRiYdL~kqel----vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l--r~H~~avr--~V 656 (733)
T KOG0650|consen 585 TQRSVRIYDLSKQEL----VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL--RLHEKAVR--SV 656 (733)
T ss_pred eccceEEEehhHHHH----HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh--hhhhhhhh--hh
Confidence 346799999977543 33334556679999999999999999999999999998664432111 11111222 56
Q ss_pred EEcCCCcEEEEEccCCeEEEecCC------Ccc---ceeEEeCCCcC--CcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 86 IWGWDDSCIFIGNMTRTVEVISPA------QRR---SVATLQSPYIS--AIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 86 ~~~~~~~~l~~~~~d~~i~i~~~~------~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
+|++.-.++++|+.||++.|+--. ... +++.+++|... .-.....||| ..-.|.+++.||+|++|
T Consensus 657 a~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 657 AFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence 889999999999999999988432 222 34556666543 2235778999 66788999999999998
No 219
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.31 E-value=1.8e-11 Score=74.85 Aligned_cols=102 Identities=13% Similarity=0.180 Sum_probs=76.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++|+.+..+.+|.+..............-....|..+.+.||++.+++++.|+++++|..++.....++..... .
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----g 295 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----G 295 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-----c
Confidence 35677778888988764322211222222334588999999999999999999999999999988876653221 2
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
+..++|+|+...++.+++|+.|.+|++
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 346799999999999999999999986
No 220
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=5.2e-10 Score=75.66 Aligned_cols=131 Identities=12% Similarity=0.103 Sum_probs=86.8
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.++|..... ...+..|...+.+.+|+|+|+.|+..+. +..|.+||+.+++......... ....
T Consensus 182 ~~l~~~d~dg~~-----~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g------~~~~ 250 (435)
T PRK05137 182 KRLAIMDQDGAN-----VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG------MTFA 250 (435)
T ss_pred eEEEEECCCCCC-----cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC------cccC
Confidence 367788875433 4555578889999999999998888764 4689999998776543322221 1235
Q ss_pred EEEcCCCcEEE-EEccCCe--EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCC--eEEEeeC
Q 038702 85 AIWGWDDSCIF-IGNMTRT--VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGG--QVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~-~~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~~wd~ 153 (154)
..|+|+|+.|+ +.+.++. |.+||+.+++.. .+..+. . ......|+| +++.|+..+ .+| .|+++|+
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~-~-~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSP-A-IDTSPSYSP-DGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCC-C-ccCceeEcC-CCCEEEEEECCCCCCeEEEEEC
Confidence 67999998775 4455554 777788877643 343222 2 224578999 777776655 333 5777775
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.6e-10 Score=77.93 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=85.8
Q ss_pred ecCCCcEEEE--EccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccc-eeEeecCCCCce
Q 038702 4 SSTDGTACIW--DLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENT-AMIHHNNQTGRW 79 (154)
Q Consensus 4 ~~~d~~v~vw--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~-~~~~~~~~~~~~ 79 (154)
.+.+|.+.|| |+..+. ...+..+...+....|+|+|+.++..+ .++...+|++...... ....+ .+
T Consensus 266 ~~~~g~~~Iy~~d~~~~~-----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~---~~-- 335 (429)
T PRK01742 266 SSKDGVLNIYVMGANGGT-----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG---RG-- 335 (429)
T ss_pred EecCCcEEEEEEECCCCC-----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC---CC--
Confidence 3467776666 444332 344446677788999999999877654 5788888887543222 22211 11
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
....|+|+|++++..+.++ +.+||+.+++....... .. ...+.|+| ++++|+.++.++.+.+|++
T Consensus 336 ---~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~---~~~~~~sP-dG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 336 ---YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FL---DESPSISP-NGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ---CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CC---CCCceECC-CCCEEEEEEcCCCceEEEE
Confidence 2356899999998887765 55589988765432222 11 13467999 8899999988888877753
No 222
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=2e-10 Score=81.22 Aligned_cols=136 Identities=14% Similarity=0.095 Sum_probs=98.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccC-----CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce-eEeecCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKR-----AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-MIHHNNQ 75 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-~~~~~~~ 75 (154)
+.+..++.+-+||...... .....+.. ...-+-++++.-++++|+.-+.+.+|+....+.+. ...|..
T Consensus 103 ~l~~~~ns~~i~d~~~~~~-----~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG- 176 (967)
T KOG0974|consen 103 ALVTSRNSLLIRDSKNSSV-----LSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG- 176 (967)
T ss_pred EEEEcCceEEEEecccCce-----ehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC-
Confidence 4566777888888865442 11122222 22233446677789999999999999987443333 333333
Q ss_pred CCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcccee-EEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 76 TGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVA-TLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.++.+.|+.+|+++++.++|..+|+|++.+.+... +..+|...+ +.+++.| +.+++++.|.+.++|+.
T Consensus 177 -----~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv--w~~~~~~---n~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 177 -----SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV--WACCFLP---NRIITVGEDCTCRVWGV 245 (967)
T ss_pred -----ceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccccee--EEEEecc---ceeEEeccceEEEEEec
Confidence 57788999999999999999999999999988766 445555444 6788887 39999999999999964
No 223
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.5e-10 Score=80.43 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=95.9
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc---cceeEeecCCCCceEeEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE---NTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 83 (154)
+..+.+|...+.............|.-.+++.+++|++++++++..||.|.+|.--..+ .....-|.... .+.
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~----~V~ 255 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD----EVN 255 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc----ccc
Confidence 44577888776441111111122577779999999999999999999999999644311 11111222211 234
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.++|+++|.+|++|+.++.+-+|.+.+++ .+-++ ..+.....+.++| ++++.+....|..|.+-.
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLP--RLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLP--RLGSPILHIVVSP-DSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCC-ccccc--ccCCeeEEEEEcC-CCCeEEEEecCceEEEEe
Confidence 67899999999999999999999999988 22332 2333347889998 888888888999988754
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=9.7e-10 Score=74.17 Aligned_cols=128 Identities=17% Similarity=0.111 Sum_probs=82.8
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.|.++|....+ ...+..+...+.+.+|+|+|+.|+..+. +..+.+|++.+++.......... ....
T Consensus 180 ~l~~~d~dg~~-----~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~------~~~~ 248 (429)
T PRK03629 180 ELRVSDYDGYN-----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH------NGAP 248 (429)
T ss_pred eEEEEcCCCCC-----CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC------cCCe
Confidence 57788876544 3444566778999999999998886542 45789999987654333222111 1145
Q ss_pred EEcCCCcEEEEE-ccCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CCeEEEe
Q 038702 86 IWGWDDSCIFIG-NMTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GGQVYVW 151 (154)
Q Consensus 86 ~~~~~~~~l~~~-~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~w 151 (154)
.|+|||+.|+.. +.++ .|++||+.+++...... +.. ......|+| +++.|+..+. ++...+|
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~--~~~~~~wSP-DG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRS--NNTEPTWFP-DSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-CCC--CcCceEECC-CCCEEEEEeCCCCCceEE
Confidence 799999988765 4444 58899998876543332 222 225689999 7777766554 3444444
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.29 E-value=2.5e-10 Score=72.14 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=86.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
.....|+.|.+|++...+- ..++.....++.+++|||+|+ .|.+...+-+|.+|.+.+....... +... .+
T Consensus 65 C~~yk~~~vqvwsl~Qpew----~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~---~~ 136 (447)
T KOG4497|consen 65 CVAYKDPKVQVWSLVQPEW----YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKT---NV 136 (447)
T ss_pred eeeeccceEEEEEeeccee----EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-cccc---Cc
Confidence 4567889999999976553 344446678899999999996 4556667999999999877654332 1111 11
Q ss_pred eEEEEEEcCCCcEEEEEcc------------------------------------CCeEEEecCCCccceeEEeCCCcCC
Q 038702 81 SSFRAIWGWDDSCIFIGNM------------------------------------TRTVEVISPAQRRSVATLQSPYISA 124 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~------------------------------------d~~i~i~~~~~~~~~~~~~~~~~~~ 124 (154)
. ..+|+|+|++.+..+. ++.+.+||.--.-.+... +....
T Consensus 137 k--g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG 212 (447)
T KOG4497|consen 137 K--GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLG 212 (447)
T ss_pred e--eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccc
Confidence 2 3457777777665532 122334442110001111 11112
Q ss_pred cceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 125 IPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+ ..+.|+| .+++|+.|++|+.+++-|
T Consensus 213 ~-k~v~wsP-~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 213 L-KFVEWSP-CNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred e-eEEEecc-ccceEEeeccchhhhhhc
Confidence 2 4578999 789999999999988754
No 226
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.29 E-value=1.1e-10 Score=77.91 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=69.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-eeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-AMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~~~~ 79 (154)
|+++++||.|++|.-...- ...+.....+|+|++|.|+.+.++.+. .+.+.+-.+.....+ ....|..
T Consensus 119 Llt~GEDG~iKiWSrsGML-----RStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDG----- 187 (737)
T KOG1524|consen 119 LLTAGEDGVIKIWSRSGML-----RSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDG----- 187 (737)
T ss_pred eeeecCCceEEEEeccchH-----HHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCc-----
Confidence 5789999999999965432 122235678999999999888766653 345666555443322 2222332
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
-++++.|++....+++|+.|-..++||..
T Consensus 188 -iiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 188 -LVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred -EEEEeecCccccceeecCCceeEEeeccc
Confidence 45678999999999999999999999964
No 227
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.27 E-value=2.9e-10 Score=72.98 Aligned_cols=141 Identities=11% Similarity=0.086 Sum_probs=86.6
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe---eCCCeEEEEeccccccceeEeecCCCCc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT---SFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|.+..+....++++..... ..+......-...-+++.|..+......+ +....+.+|....+......+|..
T Consensus 78 Av~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvS---- 152 (390)
T KOG3914|consen 78 AVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVS---- 152 (390)
T ss_pred EEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhh----
Confidence 3444555556677665442 11122222223333444444444444333 344445555555444444444443
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC-CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+.++++||+++++++..|..||+-.......+..+.. |...+ ..++..+ +..|++++.|+++++||+
T Consensus 153 --ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFV--S~isl~~--~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 153 --MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFV--STISLTD--NYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred --hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhe--eeeeecc--CceeeecCCCCcEEEEec
Confidence 455789999999999999999999988776666666654 54444 3556654 467899999999999997
No 228
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=1.7e-11 Score=91.13 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=98.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC------
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN------ 74 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~------ 74 (154)
+||+.||.|++|....++. ..... .-...|+.+.|+.+|+.+..+..||.+.+|............|..
T Consensus 2224 ltgs~dgsv~~~~w~~~~~----v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2224 LTGSQDGSVRMFEWGHGQQ----VVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFR 2299 (2439)
T ss_pred EecCCCceEEEEeccCCCe----EEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCcccccee
Confidence 6899999999999877653 33222 223889999999999999999999999999876221100000000
Q ss_pred --------------------------------CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc
Q 038702 75 --------------------------------QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI 122 (154)
Q Consensus 75 --------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 122 (154)
...+.-....+++.|..+.|++|+.+|.|.+||+++.++++.++.
T Consensus 2300 Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--- 2376 (2439)
T KOG1064|consen 2300 FIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--- 2376 (2439)
T ss_pred eeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---
Confidence 000001122467899999999999999999999999888877653
Q ss_pred CCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 123 SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++ ...+|++|+..|.++||+++
T Consensus 2377 --------~~--~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2377 --------LD--TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred --------hh--hhheeeccCcccceEEEEcc
Confidence 22 34789999999999999874
No 229
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=6.5e-11 Score=76.20 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=73.8
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEeccccccce-eEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce
Q 038702 36 HSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-MIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV 114 (154)
Q Consensus 36 ~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 114 (154)
..++|+++|..+++++.||++|+|+........ ...|..+ +. .+.|+||+++|++-+.| ..+||+..++..+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~e----V~--DL~FS~dgk~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAE----VK--DLDFSPDGKFLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCc----cc--cceeCCCCcEEEEecCC-ceEEEEeccCchh
Confidence 689999999999999999999999966554433 2233322 33 56899999999999999 8999999999777
Q ss_pred eEEeCCCcCCcceEEEecCCCc---cEEEE--EcCCCeEEEeeC
Q 038702 115 ATLQSPYISAIPCRFHAHPHQV---GTLAG--ATGGGQVYVWTS 153 (154)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~--~~~d~~i~~wd~ 153 (154)
..............+.|.. ++ .+++. ....+.|+.||+
T Consensus 221 a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~ 263 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDI 263 (398)
T ss_pred hhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEe
Confidence 6655222222223344443 22 23222 234456666654
No 230
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.25 E-value=4.7e-11 Score=76.51 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=74.1
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
++...+.+|....+. .....+|-..++.++|+||+++++++..|+.|++-..........+.- .+.+.+..++
T Consensus 129 gD~~~~di~s~~~~~-----~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~is 201 (390)
T KOG3914|consen 129 GDVYSFDILSADSGR-----CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTIS 201 (390)
T ss_pred CCceeeeeecccccC-----cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeee
Confidence 334445555554422 566679999999999999999999999999999977665444322211 2333444443
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
.- ++..|++++-|+++++||+++++++.++.
T Consensus 202 --l~-~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 202 --LT-DNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred --ec-cCceeeecCCCCcEEEEecccCCcccccc
Confidence 23 55668999999999999999999886654
No 231
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.25 E-value=1.2e-09 Score=67.97 Aligned_cols=114 Identities=9% Similarity=0.033 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcC-CCcEEEEEccCCeEEEecCC-Ccc
Q 038702 35 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGW-DDSCIFIGNMTRTVEVISPA-QRR 112 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~-~~~ 112 (154)
..++.|++.+..++++..+|.+.+-+............ ..+......+.|+. +++.+.+|+.|+.+..||++ .++
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w---k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW---KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc---cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 45788999999999999999988555443322221111 11112233455654 45799999999999999999 444
Q ss_pred ceeE-EeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 113 SVAT-LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 113 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.+.. .+.|..++ +++.-+|+.+.++++|++|..|++||.
T Consensus 201 ~i~~n~kvH~~GV--~SI~ss~~~~~~I~TGsYDe~i~~~Dt 240 (339)
T KOG0280|consen 201 FIWHNSKVHTSGV--VSIYSSPPKPTYIATGSYDECIRVLDT 240 (339)
T ss_pred eeeecceeeecce--EEEecCCCCCceEEEeccccceeeeeh
Confidence 4433 33344444 467777778899999999999999996
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.9e-09 Score=72.76 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=80.9
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEE--eccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIW--SGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.|.+||+.+++ ...+..+...+....|+|+|+.|+..+. ++...+| |+.+++......... .....
T Consensus 268 ~I~~~d~~tg~-----~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~------~~~~~ 336 (429)
T PRK03629 268 NLYVMDLASGQ-----IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS------QNQDA 336 (429)
T ss_pred EEEEEECCCCC-----EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC------CccCE
Confidence 48888887654 3444445556788999999998877665 3444455 555543332221111 11245
Q ss_pred EEcCCCcEEEEEccC---CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCe---EEEeeC
Q 038702 86 IWGWDDSCIFIGNMT---RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ---VYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~---i~~wd~ 153 (154)
.|+|+|++++..+.+ ..|.+||+.+++. ..+.... ......|+| ++..|+..+.++. +.++++
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~---~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTF---LDETPSIAP-NGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCC---CCCCceECC-CCCEEEEEEcCCCceEEEEEEC
Confidence 799999988776543 3588899987764 3343221 113568999 8888888887654 566665
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=6.6e-10 Score=74.20 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=81.4
Q ss_pred cccCCeEEEEEcCCCCEEEEe--eCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC---CeEE
Q 038702 30 SHKRAVHSAYFSPSGSSLATT--SFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT---RTVE 104 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~--~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~ 104 (154)
...++|.++.|+|+++.|++. -.--++.++|++..-. ..+..... . ++-|+|.|++++.++.+ |.+.
T Consensus 268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~df~egpR-----N--~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-FDFPEGPR-----N--TAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-EeCCCCCc-----c--ceEECCCCCEEEEeecCCCCCceE
Confidence 457899999999999877664 4466788999864322 22211111 1 35699999999888754 6899
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC------CCeEEEeeC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG------GGQVYVWTS 153 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~wd~ 153 (154)
|||+.+.+++..+.... ..-+.|+| ++++|++++. |+.++||+.
T Consensus 340 vwDv~n~K~i~~~~a~~----tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAAN----TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEeccchhhccccccCC----ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe
Confidence 99999988888776432 24579999 8999988874 788999975
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.9e-09 Score=72.97 Aligned_cols=132 Identities=14% Similarity=0.025 Sum_probs=84.2
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEE-EeeCCCe--EEEEeccccccceeEeecCCCCceEeEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLA-TTSFDDT--IGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
+..|.+||+.++. ...+..+.+.+...+|+|+|+.++ +.+.++. |.+||+.+.....+..+.. ...
T Consensus 225 ~~~i~~~dl~~g~-----~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~------~~~ 293 (435)
T PRK05137 225 RPRVYLLDLETGQ-----RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPA------IDT 293 (435)
T ss_pred CCEEEEEECCCCc-----EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCC------ccC
Confidence 4679999997764 334445667788899999998775 4555555 6677887765443322211 112
Q ss_pred EEEEcCCCcEEEEEcc-CC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC---CeEEEeeC
Q 038702 84 RAIWGWDDSCIFIGNM-TR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG---GQVYVWTS 153 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~wd~ 153 (154)
...|+|+|+.++..+. ++ .|+++|+..++.. .+....... ....|+| +++.|+....+ ..|.+||+
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~--~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRY--STPVWSP-RGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcc--cCeEECC-CCCEEEEEEcCCCceEEEEEEC
Confidence 4679999998887663 33 6888887765543 333222222 3468999 77777765543 36777775
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.4e-10 Score=74.33 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=86.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|+++..-+.|++||.+.+.. +...+ -...+|+++...|.++++++|..-+.+..+|++.+.......... .+
T Consensus 219 fat~T~~hqvR~YDt~~qRR----PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tG-- 291 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRR----PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TG-- 291 (412)
T ss_pred EEEEecceeEEEecCcccCc----ceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cC--
Confidence 57899999999999987654 44444 457789999999999999999999999999999887665422211 11
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
..-.+..+|..+++++++-|+.+||+|+.+.+++....
T Consensus 292 -sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 292 -SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred -CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 12245668999999999999999999999977665443
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.7e-09 Score=72.18 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=82.4
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEE-EeeCCC--eEEEEeccccccceeEeecCCCCceEeEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLA-TTSFDD--TIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
+..|.+||+..++ ...+..+.+...+.+|+|+|+.++ +.+.++ .|.+||+.+++......+.. ...
T Consensus 227 ~~~l~~~dl~~g~-----~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~------~~~ 295 (433)
T PRK04922 227 RSAIYVQDLATGQ-----RELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG------IDT 295 (433)
T ss_pred CcEEEEEECCCCC-----EEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCC------Ccc
Confidence 3468899987654 233334455556889999999775 445555 58999998766443322211 112
Q ss_pred EEEEcCCCcEEEEEcc-CCe--EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC---eEEEeeCC
Q 038702 84 RAIWGWDDSCIFIGNM-TRT--VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG---QVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~-d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~wd~~ 154 (154)
...|+|+++.++..+. ++. |.++++.+++.. .+..... .....+|+| +++.|+..+.++ .|.+||++
T Consensus 296 ~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~--~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGN--YNARASVSP-DGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCC--CccCEEECC-CCCEEEEEECCCCceeEEEEECC
Confidence 4579999998877663 444 666677666533 2321111 123578999 778777654332 68899863
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.2e-09 Score=73.75 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=81.3
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC---CeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.++|..... ...+..+...+.+.+|+|+|+.++..+.+ ..|.+||+.+++......... ....
T Consensus 176 ~~L~~~D~dG~~-----~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g------~~~~ 244 (427)
T PRK02889 176 YQLQISDADGQN-----AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG------SNSA 244 (427)
T ss_pred cEEEEECCCCCC-----ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC------Cccc
Confidence 346666654322 34445777889999999999998877643 359999998776543322211 1225
Q ss_pred EEEcCCCcEEE-EEccCCeEEEec--CCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEee
Q 038702 85 AIWGWDDSCIF-IGNMTRTVEVIS--PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWT 152 (154)
Q Consensus 85 ~~~~~~~~~l~-~~~~d~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd 152 (154)
..|+|+|+.|+ +.+.++..++|. +..++ ...+..+. . ......|+| +++.|+..+ .++...+|.
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~-~-~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS-G-IDTEPFFSP-DGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC-C-CCcCeEEcC-CCCEEEEEecCCCCcEEEE
Confidence 68999998876 467777766664 44443 34443322 2 224578999 777766544 345555654
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=1.2e-09 Score=73.87 Aligned_cols=131 Identities=16% Similarity=0.166 Sum_probs=85.5
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.+||..... ...+..+...+.+.+|+|+|+.++..+. +..+.+||+.+++...+..... ....
T Consensus 184 ~~l~i~D~~g~~-----~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g------~~~~ 252 (433)
T PRK04922 184 YALQVADSDGYN-----PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG------INGA 252 (433)
T ss_pred EEEEEECCCCCC-----ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC------CccC
Confidence 358888875433 4455577788999999999999888764 3469999998765543322211 1124
Q ss_pred EEEcCCCcEEE-EEccCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCe--EEEeeC
Q 038702 85 AIWGWDDSCIF-IGNMTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQ--VYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~-~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~--i~~wd~ 153 (154)
..|+|+|+.++ +.+.++ .|++||+.+++.. .+..+. . .....+|+| +++.|+..+ .+|. |+++|+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~-~-~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHF-G-IDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCC-C-CccceEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 67999998775 444555 5999999887643 343222 2 224678999 777776555 4444 555554
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.19 E-value=6.9e-09 Score=69.89 Aligned_cols=131 Identities=18% Similarity=0.084 Sum_probs=83.5
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEE-eeCCC--eEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLAT-TSFDD--TIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|++||+.++. ......+.+.+.+++|+|+++.|+. .+.++ .|.+||+.+........+... ...
T Consensus 214 ~~i~v~d~~~g~-----~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~------~~~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQ-----REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGI------DTE 282 (417)
T ss_pred cEEEEEECCCCC-----EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCC------CCC
Confidence 478999987754 2333455666778999999987764 44444 588888877654333222111 113
Q ss_pred EEEcCCCcEEEEEcc-CC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC---eEEEeeC
Q 038702 85 AIWGWDDSCIFIGNM-TR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG---QVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~wd~ 153 (154)
..|+|+++.|+..+. ++ .|.++++.+++.. .+..+... .....|+| ++.+++.++.++ .|.+||+
T Consensus 283 ~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~--~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGY--NASPSWSP-DGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCC--ccCeEECC-CCCEEEEEEccCCceEEEEEeC
Confidence 478999998876654 33 5778888766543 33322222 24578999 778887777665 7888876
No 240
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.17 E-value=2e-10 Score=51.11 Aligned_cols=35 Identities=34% Similarity=0.587 Sum_probs=32.3
Q ss_pred ceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEe
Q 038702 26 TKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60 (154)
Q Consensus 26 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~ 60 (154)
..+.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34559999999999999999999999999999997
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=7.7e-09 Score=69.89 Aligned_cols=132 Identities=15% Similarity=0.120 Sum_probs=78.9
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEE-EeeCCCeEEEEecc--ccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGV--NFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.+||+.+++ ...+....+.+....|+|+|+.++ +.+.++...+|.+. .........+.. ....
T Consensus 220 ~~I~~~dl~~g~-----~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~------~~~~ 288 (427)
T PRK02889 220 PVVYVHDLATGR-----RRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSG------IDTE 288 (427)
T ss_pred cEEEEEECCCCC-----EEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCC------CCcC
Confidence 458999997765 333334455667899999999886 46778876776553 333222211111 1124
Q ss_pred EEEcCCCcEEEEEcc-CCeEEEecC--CCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC---eEEEeeCC
Q 038702 85 AIWGWDDSCIFIGNM-TRTVEVISP--AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG---QVYVWTSD 154 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~-d~~i~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~~wd~~ 154 (154)
..|+|||+.++..+. ++...+|.+ .+++. ..+....... ....|+| ++++|+..+.++ .|.+||++
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~--~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYN--TSPRISP-DGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCc--CceEECC-CCCEEEEEEccCCcEEEEEEECC
Confidence 579999998876553 455566644 44432 2222111111 3568999 788887766543 68999863
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=3.2e-09 Score=71.23 Aligned_cols=140 Identities=9% Similarity=0.059 Sum_probs=103.4
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
+-|...|.|.+|+...++. ...+. +|.+.|.++.++.+-..|.+++.|+.+..|+..............+
T Consensus 74 vlgt~~g~v~~ys~~~g~i----t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~---- 145 (541)
T KOG4547|consen 74 VLGTPQGSVLLYSVAGGEI----TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP---- 145 (541)
T ss_pred EeecCCccEEEEEecCCeE----EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC----
Confidence 4577788999999988764 33333 7999999999999999999999999999999987766555443322
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEec--CCCccEEEEE-cCCCeEEEee
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH--PHQVGTLAGA-TGGGQVYVWT 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~-~~d~~i~~wd 152 (154)
...+.+.+||+..+++++ +.|++||+++++.+..+.+|...+.+..+... ...+.+++++ ..+..+.+|-
T Consensus 146 -~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 146 -LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred -ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 223567899999999886 68999999999999999988777654444332 2124555544 3555666664
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.13 E-value=8e-10 Score=68.68 Aligned_cols=127 Identities=14% Similarity=0.115 Sum_probs=79.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+++-.+|.+.+-+....... .......|.-+....+|+. +.+.+++|+.|+.+..||++-+. ..+..+...+...+
T Consensus 137 ~vs~s~G~~~~v~~t~~~le--~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kvH~~GV 213 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETEMVLE--KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKVHTSGV 213 (339)
T ss_pred EEEcCCCcEEEEecceeeee--ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeecceeeecce
Confidence 34555666664444332210 0223347999999999977 66899999999999999999444 22222122222222
Q ss_pred eEEEEEE-cCCCcEEEEEccCCeEEEecCC-CccceeEEeCCCcCCcceEEEecCCCc
Q 038702 81 SSFRAIW-GWDDSCIFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQV 136 (154)
Q Consensus 81 ~~~~~~~-~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (154)
. ++.- .|.+.++++|+.|..|++||.+ -++++..-. -.+.+ +.+.++|...
T Consensus 214 ~--SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGV-WRi~~~p~~~ 266 (339)
T KOG0280|consen 214 V--SIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGV-WRIKHHPEIF 266 (339)
T ss_pred E--EEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccce-EEEEecchhh
Confidence 2 2223 3468899999999999999999 456665433 22333 6778877543
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.13 E-value=1.4e-08 Score=68.39 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=82.1
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC---CeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.|.++|..... ...+..+...+.+.+|+|+|++++....+ ..|.+||+.+++......... ....+
T Consensus 171 ~l~~~d~~g~~-----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~------~~~~~ 239 (417)
T TIGR02800 171 ELQVADYDGAN-----PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG------MNGAP 239 (417)
T ss_pred eEEEEcCCCCC-----CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC------Cccce
Confidence 46677765333 44455677788999999999999887654 479999998765443332211 12246
Q ss_pred EEcCCCcEEEE-EccCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CC--eEEEeeC
Q 038702 86 IWGWDDSCIFI-GNMTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GG--QVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~-~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~wd~ 153 (154)
.|+|+++.|+. .+.++ .|++|++.+++.. .+..+.. ......|+| +++.|+..+. ++ .|+++|+
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~--~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPG--IDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCC--CCCCEEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 79999987764 44444 5888898876543 3332221 123567888 6776665543 33 5776665
No 245
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=2.8e-10 Score=74.95 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=105.1
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC--CCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
|++|++|..|.+||...... ...+. +|...|...+|-| +.+.+++++.||.+++=.+..............+.
T Consensus 157 l~SgSDD~~vv~WdW~~~~~----~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~ 232 (559)
T KOG1334|consen 157 LASGSDDLQVVVWDWVSGSP----KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHE 232 (559)
T ss_pred eeccCccceEEeehhhccCc----ccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceeccccc
Confidence 57899999999999988775 55555 8999999999988 45689999999999987765433322111111122
Q ss_pred ceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeEEe--CCCcC--CcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 78 RWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVATLQ--SPYIS--AIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
..+. .++..|+ ...|.+++.|+.+.-+|+++..+...+. ..... +...+++.+|.+...+++|+.|..+++||
T Consensus 233 g~vh--klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD 310 (559)
T KOG1334|consen 233 GPVH--KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYD 310 (559)
T ss_pred Cccc--eeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhc
Confidence 2222 3445564 4578999999999999999776544433 22222 33467888998888999999999999998
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
.
T Consensus 311 ~ 311 (559)
T KOG1334|consen 311 Q 311 (559)
T ss_pred c
Confidence 5
No 246
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.11 E-value=2.9e-09 Score=73.24 Aligned_cols=111 Identities=11% Similarity=0.123 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc-
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR- 111 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~- 111 (154)
.|..++|-|+|..|+.+.. ..+.+||...+.....+. |.. .+.+++|+.+|+.+++|+.|..|.+|+..-.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKD------tVycVAys~dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKD------TVYCVAYAKDGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccc------eEEEEEEccCCceeccCCCceeEEEecccccc
Confidence 7999999999998888754 468999999887765443 433 4567899999999999999999999986411
Q ss_pred -------cceeEE--e-------------------------CCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 112 -------RSVATL--Q-------------------------SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 112 -------~~~~~~--~-------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
..++-+ . .+.....+++.+|.. ++++|+.|-.+|+|.+-+
T Consensus 87 ~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 87 ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRN 160 (1081)
T ss_pred eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeec
Confidence 111100 0 022334456778888 899999999999998754
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=2.5e-08 Score=67.59 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=81.1
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCC---CeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.|.++|..... ...+..+...+....|+|+|+.|+..+.+ ..|.+|++.+++...+..... .....
T Consensus 180 ~l~~~d~~g~~-----~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g------~~~~~ 248 (430)
T PRK00178 180 TLQRSDYDGAR-----AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG------LNGAP 248 (430)
T ss_pred EEEEECCCCCC-----ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC------CcCCe
Confidence 36666665433 44455777889999999999998776543 368889998765443322111 11245
Q ss_pred EEcCCCcEEEE-EccCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCC--eEEEeeC
Q 038702 86 IWGWDDSCIFI-GNMTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGG--QVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~-~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~~wd~ 153 (154)
.|+|+|+.|+. ...++ .|+++|+.+++.. .+..+.. ......|+| +++.|+..+ .++ .|+++|+
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~--~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPA--IDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCC--CcCCeEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 79999998764 44444 5888899877643 3332221 224578999 666655444 333 5666664
No 248
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.06 E-value=9.6e-09 Score=74.63 Aligned_cols=148 Identities=11% Similarity=0.002 Sum_probs=94.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
+.+..-+.|..||++...... ..+..-..+.|++++.+|.+++++.|+..|.+.+||++-........+... ..+.
T Consensus 1167 vy~T~~~~iv~~D~r~~~~~w--~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~--~~i~ 1242 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDAW--RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR--APIR 1242 (1431)
T ss_pred EEEEeccceEEecchhhhhHH--hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc--CCcc
Confidence 345566778999998765311 122223457899999999999999999999999999997766544443322 1222
Q ss_pred EEEEE-EcCCCcEEEEEc--cCCeEEEecCCCccceeEEeCC-CcC---------------CcceEEEecCCCccEEEEE
Q 038702 82 SFRAI-WGWDDSCIFIGN--MTRTVEVISPAQRRSVATLQSP-YIS---------------AIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 82 ~~~~~-~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~l~~~ 142 (154)
-+.++ +.|.....++++ ..+.|.+|++.++....++... ... ......+--+..+..+.+|
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG 1322 (1431)
T ss_pred eEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec
Confidence 22222 233344554444 4678999999988766666532 100 0001111112245688999
Q ss_pred cCCCeEEEeeC
Q 038702 143 TGGGQVYVWTS 153 (154)
Q Consensus 143 ~~d~~i~~wd~ 153 (154)
+.|..|+.||.
T Consensus 1323 gsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1323 GSDMKIRKWDP 1333 (1431)
T ss_pred CCccceeeccC
Confidence 99999999996
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.06 E-value=1.2e-07 Score=62.89 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=88.2
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeEeecCCC--Cc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMIHHNNQT--GR 78 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~--~~ 78 (154)
.+++.||.|.++|+.+.+ ......-......++++++|+++++++ ..+.+.++|.++.+....+...... ..
T Consensus 52 yv~~rdg~vsviD~~~~~-----~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~ 126 (369)
T PF02239_consen 52 YVANRDGTVSVIDLATGK-----VVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGP 126 (369)
T ss_dssp EEEETTSEEEEEETTSSS-----EEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS
T ss_pred EEEcCCCeEEEEECCccc-----EEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccccc
Confidence 345779999999999877 454455555678999999999998876 5899999999998877655422111 11
Q ss_pred eEeEEEEEEcCCCcEEEE-EccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEE-EcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFI-GNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG-ATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~~wd~ 153 (154)
..+...+..+|....++. --..+.|.+.|....+.+..-. ...........|+| ++++++. ......|-++|.
T Consensus 127 ~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 127 ESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-IKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp ---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-EE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEET
T ss_pred CCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee-ecccccccccccCc-ccceeeecccccceeEEEee
Confidence 112223445677664444 4455888888887765443221 11223346788999 6676554 456678888875
No 250
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=5.2e-10 Score=73.73 Aligned_cols=147 Identities=16% Similarity=0.266 Sum_probs=102.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCC-------CCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc------
Q 038702 1 MATSSTDGTACIWDLRSMATDKP-------EPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN------ 66 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~-------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~------ 66 (154)
+++|+.|--+++||.+.-..... .+..+. ...-.|+++.|+.++.-|.++-.|-.|.++.-..+..
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 46788899999999876432110 011111 2345799999998777777777788888885443222
Q ss_pred ----c---e-eEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccE
Q 038702 67 ----T---A-MIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT 138 (154)
Q Consensus 67 ----~---~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (154)
. . ..+|.+... +.... -|.|...|+++|+.=|.|-||+-.+++.+..+.+... + ..++..+|. --+
T Consensus 377 s~~~~~~k~vYKGHrN~~T--VKgVN-FfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-V-VNCLEpHP~-~Pv 450 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRT--VKGVN-FFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-V-VNCLEPHPH-LPV 450 (559)
T ss_pred cchhhccchhhcccccccc--cceee-eccCccceEEecCccceEEEEecchhHHHHHhhcccc-e-EeccCCCCC-Cch
Confidence 0 1 112333222 22221 3789999999999999999999999999999987654 3 377888994 468
Q ss_pred EEEEcCCCeEEEeeC
Q 038702 139 LAGATGGGQVYVWTS 153 (154)
Q Consensus 139 l~~~~~d~~i~~wd~ 153 (154)
|++++-|..|+||-.
T Consensus 451 LAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 451 LASSGIDHDVKIWTP 465 (559)
T ss_pred hhccCCccceeeecC
Confidence 999999999999965
No 251
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=3.4e-09 Score=71.61 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=97.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCC-CCcee--ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKP-EPTKV--LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
+++++.|++|++|.++....... ...++ ..|+.+|.++-|-.+-+.+++ .|+-+++||.--+...........++
T Consensus 750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~ 827 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEG 827 (1034)
T ss_pred eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccC
Confidence 47899999999999976432111 11222 289999999999888777665 47889999987666554332222222
Q ss_pred ceEeEEEEEEcCCCcEEEEE-ccCCeEEEecCCCccceeEEeC---CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 78 RWISSFRAIWGWDDSCIFIG-NMTRTVEVISPAQRRSVATLQS---PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. ...+.+.-+-+...++.+ +...+|+++|.+..+-...++- +.......+++..| .++.++.+-..|.|.+.|.
T Consensus 828 a-~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 828 A-GGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDA 905 (1034)
T ss_pred C-CceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEec
Confidence 1 112222223355555555 6788999999998877666652 22223335566777 7788888888888877764
No 252
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=1.3e-07 Score=70.30 Aligned_cols=152 Identities=7% Similarity=-0.002 Sum_probs=93.0
Q ss_pred eeecCCCcEEEEEccCCCCCCC----CCceeec------ccCCeEEEEEcCCCCE-EEEeeCCCeEEEEeccccccceeE
Q 038702 2 ATSSTDGTACIWDLRSMATDKP----EPTKVLS------HKRAVHSAYFSPSGSS-LATTSFDDTIGIWSGVNFENTAMI 70 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~----~~~~~~~------~~~~v~~~~~~~~~~~-l~~~~~d~~v~~~~~~~~~~~~~~ 70 (154)
++.+.++.|++||...+..... ......+ .-.....++++|+++. +++-+.++.|++||+.++......
T Consensus 699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 4455677888888765421000 0000001 1124567999999884 455566799999999865432111
Q ss_pred ee-----------cCCC-----CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC-----------CcC
Q 038702 71 HH-----------NNQT-----GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP-----------YIS 123 (154)
Q Consensus 71 ~~-----------~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~-----------~~~ 123 (154)
.- .... ........++++++|..+++-..++.|++||..++......... ...
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL 858 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence 00 0000 00112235678999998888889999999999876654322110 011
Q ss_pred CcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 124 AIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+..+++++ +++++++-+.++.|++||++
T Consensus 859 ~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 859 SEPAGLALGE-NGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCceEEEEeC-CCCEEEEECCCCEEEEEECC
Confidence 2346788888 77888988999999999973
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.3e-07 Score=64.15 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=78.1
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEE-eeCCC--eEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLAT-TSFDD--TIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.+|++.+++. ..+....+.+....|+|+|+.++. .+.++ .|.++|+.++.......... ....
T Consensus 223 ~~l~~~~l~~g~~-----~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~------~~~~ 291 (430)
T PRK00178 223 PRIFVQNLDTGRR-----EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA------IDTE 291 (430)
T ss_pred CEEEEEECCCCCE-----EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCC------CcCC
Confidence 3577888876542 222233445567899999998874 44454 57888988765443322211 1124
Q ss_pred EEEcCCCcEEEEEcc-CC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CC--eEEEeeC
Q 038702 85 AIWGWDDSCIFIGNM-TR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GG--QVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~wd~ 153 (154)
..|+|+++.++..+. ++ .|+++++.+++... +.... .......|+| +++.++..+. ++ .|.+||+
T Consensus 292 ~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~--~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVG--NYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCC--CCccceEECC-CCCEEEEEEccCCceEEEEEEC
Confidence 579999997766553 33 57777887776432 22111 1113467899 6777766553 33 5777776
No 254
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.98 E-value=3.6e-09 Score=46.98 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=32.9
Q ss_pred ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 111 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
++++.++.+|...+ .+++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i--~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSI--NSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSE--EEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcE--EEEEEec-ccccceeeCCCCEEEEEC
Confidence 35678888776555 5889999 789999999999999997
No 255
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=8e-08 Score=59.51 Aligned_cols=143 Identities=12% Similarity=-0.044 Sum_probs=91.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|+.|+..|...+|...+++. ..... .|...|.-+.=.. ....+..++.|.++++.+++...........+
T Consensus 87 la~gG~~g~fd~~~~~tn~~----h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~---- 158 (344)
T KOG4532|consen 87 LADGGASGQFDLFACNTNDG----HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN---- 158 (344)
T ss_pred EEeccccceeeeecccCccc----ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc----
Confidence 46788889999999887654 33333 3433332221111 22245566788888888887655544332221
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+...+++.+++++++++.+....|-.|.+.. ++.+..+.............|+. ....+|++.+||++.+||+
T Consensus 159 -~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 159 -LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred -cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEe
Confidence 2244678999999999999999999998763 33333322222222224567777 6689999999999999997
No 256
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.96 E-value=1.4e-08 Score=71.86 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=99.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---------CCeEEEEeccccccceeEe
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---------DDTIGIWSGVNFENTAMIH 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~v~~~~~~~~~~~~~~~ 71 (154)
+.+|...|+|.+-|.++.+. ...+..|.+.|.++.. +|++|++++. |..|++||+++.+....+.
T Consensus 190 lf~G~t~G~V~LrD~~s~~~----iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 190 LFCGDTRGTVFLRDPNSFET----IHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred EEeecccceEEeecCCcCce----eeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 35788899999999988774 4555599999988766 7999999876 5568999999988776554
Q ss_pred ecCCCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCc-cc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 72 HNNQTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQR-RS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
..... . -+.|.|. ...++..+..|...+-|..+. .+ .....-+........+.+++ +++.++.|..+|.|
T Consensus 264 ~~~~P-----~-flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v 336 (1118)
T KOG1275|consen 264 FPYGP-----Q-FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHV 336 (1118)
T ss_pred cccCc-----h-hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecC-CCceEEEecccCcE
Confidence 32211 1 1356775 457788888999999884321 11 22222233333347899999 88999999999999
Q ss_pred EEee
Q 038702 149 YVWT 152 (154)
Q Consensus 149 ~~wd 152 (154)
.+|-
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9995
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=6.7e-08 Score=65.78 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=79.1
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CC--eEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DD--TIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.+.++|....+ ...+..+...+.+..|+|+|+.++..+. ++ .|.++|+.+++......... .....
T Consensus 199 ~l~i~d~dG~~-----~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------~~~~~ 267 (448)
T PRK04792 199 QLMIADYDGYN-----EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------INGAP 267 (448)
T ss_pred EEEEEeCCCCC-----ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------CcCCe
Confidence 45556654433 3344566778899999999998887654 33 58888887765433221111 11245
Q ss_pred EEcCCCcEEEE-EccCCe--EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCC--eEEEeeC
Q 038702 86 IWGWDDSCIFI-GNMTRT--VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGG--QVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~-~~~d~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~~wd~ 153 (154)
.|+|+|+.|+. .+.++. |+++|+.+++.. .+..+.. ......|+| +++.|+..+ .++ .|+++|+
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~--~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRA--IDTEPSWHP-DGKSLIFTSERGGKPQIYRVNL 337 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCC--CccceEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 79999997765 455564 777888877643 3332221 224678999 666665444 344 4555554
No 258
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.93 E-value=5.3e-08 Score=65.93 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=60.1
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.....+.+++++|+...|+.|+.||+|.+||............ .....++|+|+|..+++|+..|.+.+||+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~-------~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAE-------FIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeec-------ccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 6788999999999999999999999999999876533322111 123357899999999999999999999986
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=2.6e-09 Score=80.14 Aligned_cols=125 Identities=10% Similarity=0.136 Sum_probs=87.6
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
++++.+.+||.-...... ... ..|.+.++++++.|.-+.|++|+.+|.|++||++..+....+..
T Consensus 2312 ~d~~n~~lwDtl~~~~~s--~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------------ 2376 (2439)
T KOG1064|consen 2312 SDNRNVCLWDTLLPPMNS--LVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------ 2376 (2439)
T ss_pred CCCCcccchhcccCcccc--eee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------------
Confidence 567889999975543211 222 68999999999999999999999999999999987665433221
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCc---ceEEEecCCCccEEEEEcCCCe
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAI---PCRFHAHPHQVGTLAGATGGGQ 147 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~ 147 (154)
+. ...++.+|+..|.++||++.....+.++...+...- ...++..-...+.|.+++.||+
T Consensus 2377 --~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred --hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 23 567899999999999999998888877764332111 0111211113456777777763
No 260
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.90 E-value=5.8e-09 Score=64.06 Aligned_cols=142 Identities=12% Similarity=0.125 Sum_probs=81.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeC-----CCeEEEEeccccccceeEeecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSF-----DDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
++++..||.+.+.+.+..... ..+.. .|.+ -.+.++...++.+.++.. -+..+.|+++..+..... +..
T Consensus 104 V~~~~~dg~~~v~s~~~~~~~---~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~-~~~ 178 (319)
T KOG4714|consen 104 VCIGYADGSLAVFSTDKDLAL---MSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS-KKA 178 (319)
T ss_pred eEecCCCceEEEEechHHHhh---hhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccc-ccc
Confidence 467888999999887652210 01111 1221 123334445555554321 122444544433222111 111
Q ss_pred CCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccceeE-EeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 75 QTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSVAT-LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
...+. .++-+|. .+.+++|+.||.+.+||.+....... ++.|. ..+ ..+-|+|.+++.|.+++.||.+-.||
T Consensus 179 --~~~v~--~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk-~~i-~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 179 --LDAVT--ALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHK-AEI-WEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred --cccch--hhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhh-hhh-hheeccCCCchheeEecCCCcEEEEc
Confidence 11122 2344564 45788899999999999997744333 33343 333 67899999999999999999999998
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
.
T Consensus 253 a 253 (319)
T KOG4714|consen 253 A 253 (319)
T ss_pred C
Confidence 5
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.88 E-value=2.9e-07 Score=61.39 Aligned_cols=126 Identities=11% Similarity=0.018 Sum_probs=92.5
Q ss_pred CeeecCCC-cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 1 MATSSTDG-TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 1 l~~~~~d~-~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
++.|..|| .+-|+|.+.++ ...+.+.-+.|.++..+|+|++++.+.....+-+.|+.++.....-....
T Consensus 374 ~vigt~dgD~l~iyd~~~~e-----~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~----- 443 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGE-----VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----- 443 (668)
T ss_pred eEEeccCCceEEEEecCCce-----EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc-----
Confidence 35678888 79999998765 45555777889999999999999999999999999999887665433211
Q ss_pred EeEEEEEEcCCCcEEEEEccCC----eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEE
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTR----TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (154)
-......|+|+++++|.+--+| .|+++|+..++...... +. ....+.+|.| ++++|.
T Consensus 444 ~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t--a~DfsPaFD~-d~ryLY 504 (668)
T COG4946 444 GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT--AYDFSPAFDP-DGRYLY 504 (668)
T ss_pred ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cc--ccccCcccCC-CCcEEE
Confidence 1344678999999999987665 68999998877543322 22 2224567777 666553
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.87 E-value=8.9e-07 Score=58.45 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=83.3
Q ss_pred CCcEEEEEccCCCCCCCCCcee-ecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccc--cccce--eEeec--CCCCc
Q 038702 7 DGTACIWDLRSMATDKPEPTKV-LSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVN--FENTA--MIHHN--NQTGR 78 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~--~~~~~--~~~~~--~~~~~ 78 (154)
...|.+|++............. ......-+.+.|+|++++++... .+++|.++++.. +.... ..... ...+.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 3468888887654211001111 24556778999999999886665 488899999882 21111 11111 11111
Q ss_pred eEeEEEEEEcCCCcEEEEEc-cCCeEEEecCC--Cccc--eeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEee
Q 038702 79 WISSFRAIWGWDDSCIFIGN-MTRTVEVISPA--QRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWT 152 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~wd 152 (154)
...-.++++|++++|+++. .++.|.+|++. ++++ +..+. ..+..+..++++| ++++|+++. .++.|.+|+
T Consensus 245 -~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~--~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 245 -NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP--TGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp -SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE--ESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEE
T ss_pred -CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe--CCCCCccEEEEeC-CCCEEEEEecCCCeEEEEE
Confidence 1234567899999887766 45689999983 2332 22222 2234457899999 667766555 678999987
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 321 ~ 321 (345)
T PF10282_consen 321 I 321 (345)
T ss_dssp E
T ss_pred E
Confidence 5
No 263
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.86 E-value=1.5e-08 Score=64.58 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=96.0
Q ss_pred ecCCCcEEEEEccCCCC----CCCCCceeecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccc----eeEe-ec
Q 038702 4 SSTDGTACIWDLRSMAT----DKPEPTKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT----AMIH-HN 73 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~----~~~~-~~ 73 (154)
.++|-.|.+|++.-... ...++......+..|++..|+| ..+.|+.++..|+|++.|++..... ..+. ..
T Consensus 181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 45677889999865432 1111222223466899999999 5678888999999999999853221 1111 11
Q ss_pred CCC------CceEeEEEEEEcCCCcEEEEEccCCeEEEecCC-CccceeEEeCCC-----------cCCc--ceEEEecC
Q 038702 74 NQT------GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA-QRRSVATLQSPY-----------ISAI--PCRFHAHP 133 (154)
Q Consensus 74 ~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~-----------~~~~--~~~~~~~~ 133 (154)
.+. +....+..+.|+++|+|+++-.. -+|++||+. ..+++.+...|. ...+ ...++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 110 11112335789999999998653 589999994 556666665432 1111 13567887
Q ss_pred CCccEEEEEcCCCeEEEeeC
Q 038702 134 HQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 134 ~~~~~l~~~~~d~~i~~wd~ 153 (154)
++.++++|++....+++++
T Consensus 340 -~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 340 -NDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred -CcceEecccccceEEEecC
Confidence 6689999999999999984
No 264
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=6.8e-09 Score=72.13 Aligned_cols=136 Identities=17% Similarity=0.327 Sum_probs=96.0
Q ss_pred cEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.-.+|++...... .+.+. +|...|+.+-|+|+ ...+++++.|-.+..||+++...+......... ....+
T Consensus 92 kaiiwnlA~ss~~---aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s----~asqV 164 (1081)
T KOG0309|consen 92 KAIIWNLAKSSSN---AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS----AASQV 164 (1081)
T ss_pred hhhhhhhhcCCcc---ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc----cCcee
Confidence 3456777543321 23333 89999999999994 568999999999999999988766443221111 12256
Q ss_pred EEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 86 IWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+|+.....+++.+..+.|++||.+-+ .++..++++-..+ ..+.|+......+.+++.|++|+.||-
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v--n~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV--NSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEecccceee--ehHHHhhhhhhhhcccCCCCceeeecc
Confidence 78887666667777888999999865 5677787743333 345565545567889999999999985
No 265
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=5.5e-07 Score=61.40 Aligned_cols=130 Identities=16% Similarity=0.103 Sum_probs=74.2
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEE-eeCCCe--EEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLAT-TSFDDT--IGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
.|.+||+.+++. ..+....+......|+|+|+.|+. .+.++. |.++|+.+++......+.. .....
T Consensus 243 ~L~~~dl~tg~~-----~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~------~~~~p 311 (448)
T PRK04792 243 EIFVQDIYTQVR-----EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRA------IDTEP 311 (448)
T ss_pred EEEEEECCCCCe-----EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCC------Cccce
Confidence 577778766542 222222334457899999997765 455664 7777877665433222211 11245
Q ss_pred EEcCCCcEEEEEcc-CC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CC--eEEEeeC
Q 038702 86 IWGWDDSCIFIGNM-TR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GG--QVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~~wd~ 153 (154)
.|+|+++.++..+. ++ .|.++|+.+++... +....... ....|+| ++++|+..+. ++ .|.++|+
T Consensus 312 ~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~--~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 312 SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQN--LGGSITP-DGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCC--cCeeECC-CCCEEEEEEecCCceEEEEEEC
Confidence 79999998766553 33 46667777766433 22111111 3468899 6677665543 44 3455554
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=9e-07 Score=60.03 Aligned_cols=134 Identities=16% Similarity=0.058 Sum_probs=72.9
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-----CCeEEEEeccccc--cceeEeecCCCCceEe
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-----DDTIGIWSGVNFE--NTAMIHHNNQTGRWIS 81 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~~~~~~~~~--~~~~~~~~~~~~~~~~ 81 (154)
.|.+.++..++ ...+....+.....+|+|||+.|+..+. +..+..|++.... ....+.... .+ .
T Consensus 212 ~I~~~~l~~g~-----~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~-~~---~ 282 (428)
T PRK01029 212 KIFLGSLENPA-----GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA-FG---T 282 (428)
T ss_pred eEEEEECCCCC-----ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC-CC---C
Confidence 46666666544 2333344455567899999998876553 2234446665431 111111111 01 1
Q ss_pred EEEEEEcCCCcEEEEEc-cCCeEEEe--cCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC---CeEEEeeCC
Q 038702 82 SFRAIWGWDDSCIFIGN-MTRTVEVI--SPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG---GQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~-~d~~i~i~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~wd~~ 154 (154)
.....|+|||+.|+..+ .+|...+| ++.. +.....+....... ....|+| +++.|+..+.+ ..|.+||++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~--~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNS--SCPAWSP-DGKKIAFCSVIKGVRQICVYDLA 359 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCc--cceeECC-CCCEEEEEEcCCCCcEEEEEECC
Confidence 12457999999877655 45654555 4432 22233343222222 4678999 77877765432 468888863
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=8.9e-07 Score=59.96 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=98.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee---cccCCeEEEEE------cC--------------CCCEEEEeeCCCeEE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL---SHKRAVHSAYF------SP--------------SGSSLATTSFDDTIG 57 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~---~~~~~v~~~~~------~~--------------~~~~l~~~~~d~~v~ 57 (154)
+|....||.+++|+...++. ...+. .-.+.-.+..| +| +...++-|...|.|.
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~----~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQL----QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred EeecCCCCeEEEEEccCcee----eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 35678899999999987653 22221 11222333333 22 233577788899999
Q ss_pred EEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc
Q 038702 58 IWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG 137 (154)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (154)
+|+...++....+......+ .+. ...++.+-..|.+++.|+.+-.|+....+.++..+...... .+++..| ++.
T Consensus 84 ~ys~~~g~it~~~st~~h~~-~v~--~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~--~sl~is~-D~~ 157 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYG-NVN--EILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV--SSLCISP-DGK 157 (541)
T ss_pred EEEecCCeEEEEEecCCCCC-cce--eeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc--ceEEEcC-CCC
Confidence 99999888776654333222 222 34567777899999999999999999999888888655444 5788999 788
Q ss_pred EEEEEcCCCeEEEeeCC
Q 038702 138 TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~~ 154 (154)
.+++++ +.|++||+.
T Consensus 158 ~l~~as--~~ik~~~~~ 172 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIE 172 (541)
T ss_pred EEEecc--ceEEEEEcc
Confidence 888776 489999873
No 268
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=5.2e-07 Score=63.37 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=91.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCC-----CCEEEEeeCCCeEEEEeccccccceeE-eecC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPS-----GSSLATTSFDDTIGIWSGVNFENTAMI-HHNN 74 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~ 74 (154)
+++||.||+|.|-.+.+.+ .........++.+++++|+ .+++++|+..| +.++.-.-....... .+..
T Consensus 86 ~asCS~DGkv~I~sl~~~~-----~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDD-----EITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred EEEecCCCcEEEeeccCCc-----cceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 5799999999998887765 3444567889999999996 56899999988 767654433322211 2211
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC----CcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS----AIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.. .+.++.|. |.++|-++.+| |++||+.+++.+..++.++.. .....+.|.+ ...|+.|-.| +|++
T Consensus 160 --eG--~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIGW~d-~v~i 229 (846)
T KOG2066|consen 160 --EG--PIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIGWGD-SVKI 229 (846)
T ss_pred --cc--ceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC--CCeEEEecCC-eEEE
Confidence 11 23455565 88999888776 799999998887777644322 2245678876 3566666555 5555
Q ss_pred ee
Q 038702 151 WT 152 (154)
Q Consensus 151 wd 152 (154)
..
T Consensus 230 ~~ 231 (846)
T KOG2066|consen 230 CS 231 (846)
T ss_pred EE
Confidence 43
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.81 E-value=1.8e-06 Score=53.70 Aligned_cols=141 Identities=11% Similarity=-0.051 Sum_probs=90.2
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccC--CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE--eecCCCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKR--AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI--HHNNQTG 77 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~~~~ 77 (154)
..++.|.++++.++..+.. ...-|.. .+.++.++++++++++.+....|..|.+......... ......
T Consensus 132 ~i~sndht~k~~~~~~~s~------~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D- 204 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSN------KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD- 204 (344)
T ss_pred eeccCCcceeEEEEecCcc------cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC-
Confidence 4578888888888875432 2222332 2789999999999999999999999998765443222 111111
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeE----EeCCCcCCcceEEEecCCCc-cEEEEEcCCCeEEEee
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVAT----LQSPYISAIPCRFHAHPHQV-GTLAGATGGGQVYVWT 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~wd 152 (154)
..+...|+.....+|++..||++.|||++....... -+.++.+.. ..+.|+|... .+|...-.-+.+.+-|
T Consensus 205 ---~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~-R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 205 ---HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAF-RVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred ---CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCce-EEEEecCCCcceEEEEecCcceEEEEE
Confidence 234567898899999999999999999996432221 223344443 4456665221 2344444445666655
Q ss_pred C
Q 038702 153 S 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 281 ~ 281 (344)
T KOG4532|consen 281 T 281 (344)
T ss_pred c
Confidence 4
No 270
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.80 E-value=1.3e-07 Score=64.09 Aligned_cols=67 Identities=9% Similarity=0.151 Sum_probs=55.3
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.+++++|+...++.|+.||.|.+||...+..... + ....+..++||| ++.++++|+..|.+.+||+
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k---a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K---AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e---ecccceEEEEcC-CCcEEEEEcCCceEEEEEe
Confidence 44678999999999999999999999876643322 2 234557899999 8899999999999999996
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.79 E-value=2.9e-06 Score=56.81 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=91.8
Q ss_pred ecccCCeEEEEEcCCCCEEEEeeCCC-eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEec
Q 038702 29 LSHKRAVHSAYFSPSGSSLATTSFDD-TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~ 107 (154)
.+|.+.|.-..+.-+++.++.|..|| .+-++|.++.+......... ....+..+++|++++.+.....+.+.|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg------~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG------NIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCcc------ceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 47888899888888888999999999 89999999887665544333 355778899999999999889999999
Q ss_pred CCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC----eEEEeeCC
Q 038702 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG----QVYVWTSD 154 (154)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~~wd~~ 154 (154)
+.++.... +. .........+.|+| ++++++-+--+| .|+++|++
T Consensus 430 idngnv~~-id-kS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 430 IDNGNVRL-ID-KSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred ecCCCeeE-ec-ccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecC
Confidence 99987543 32 23445558999999 889998776554 68888863
No 272
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=2.1e-07 Score=57.40 Aligned_cols=59 Identities=29% Similarity=0.558 Sum_probs=50.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~ 63 (154)
++.|+.||.+-+||.+.... +..+. .|+.+|.-+-|+| ++..|+++++||.+-.||..+
T Consensus 195 v~cgt~dg~~~l~d~rn~~~----p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAM----PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEecCCCeEEEEEcccccc----hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 36799999999999988754 44444 8999999999999 788999999999999999765
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=1.8e-07 Score=65.34 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=99.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCC----------C-CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee
Q 038702 1 MATSSTDGTACIWDLRSMATDKP----------E-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM 69 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~----------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~ 69 (154)
++.|+.||.+++-.+.+...... . ...+.+|.+.|.-+.|+.+.+.|-++..+|.|.+|-+-.+.-...
T Consensus 29 IAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EE 108 (1189)
T KOG2041|consen 29 IACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEE 108 (1189)
T ss_pred EEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHH
Confidence 47899999999998865432111 0 112348999999999999999999999999999998876543321
Q ss_pred EeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce-eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 70 IHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV-ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
..... .. ..+.+++|+.+|..++..-.||.|.+=.+...+.. +.+++. ....+.|++ +.+.++.+-..|.+
T Consensus 109 MiNnR-nK--SvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~----~l~hv~ws~-D~~~~Lf~~ange~ 180 (1189)
T KOG2041|consen 109 MINNR-NK--SVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ----LLAHVLWSE-DLEQALFKKANGET 180 (1189)
T ss_pred HhhCc-Cc--cEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh----eccceeecc-cHHHHHhhhcCCcE
Confidence 11111 11 13447789999999999888988877655432211 222222 123578888 66777777788888
Q ss_pred EEeeCC
Q 038702 149 YVWTSD 154 (154)
Q Consensus 149 ~~wd~~ 154 (154)
.+||-+
T Consensus 181 hlydnq 186 (1189)
T KOG2041|consen 181 HLYDNQ 186 (1189)
T ss_pred EEeccc
Confidence 888753
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.68 E-value=2.2e-06 Score=55.03 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=50.9
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...|.+....|++|..|..+.+||+.-.+ ....+.+|...+. .+..-+ .-..+.+++.||.|.+||.+
T Consensus 202 ~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~--~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 202 CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ--ALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh--hhhhhh-hheeeeeccCCCeEEEEecc
Confidence 45799999999999999999999997543 3345556665554 233333 44689999999999999863
No 275
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=7.7e-07 Score=57.08 Aligned_cols=108 Identities=20% Similarity=0.357 Sum_probs=72.4
Q ss_pred eeecCCCcEEEEEccCCCC-----------CCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-e
Q 038702 2 ATSSTDGTACIWDLRSMAT-----------DKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-A 68 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~-----------~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~ 68 (154)
+-.+..|+|++-|++.... ..+....++ +--..|..+.|+++|+++++-.. -+|++||+.....+ .
T Consensus 230 ~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~ 308 (433)
T KOG1354|consen 230 VYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVE 308 (433)
T ss_pred EEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcce
Confidence 3457789999999984321 111122222 44578899999999999988644 57999999654433 2
Q ss_pred eEe-ec---------CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 69 MIH-HN---------NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 69 ~~~-~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
.+. |. .+......-+.++|+.++.+++||+..+.+++|+...
T Consensus 309 t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 309 TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence 222 10 1112222345788999999999999999999999543
No 276
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.65 E-value=4.6e-06 Score=56.65 Aligned_cols=130 Identities=8% Similarity=-0.039 Sum_probs=72.4
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCE--E-EEeeCCC--eEEEEeccccccceeEeecCCCCceEeEE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSS--L-ATTSFDD--TIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~~~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
.|.+.|....+ ...+........+-+|+|+|+. + ++...++ .|.+.++.+++...+..... ...
T Consensus 166 ~l~~~d~dG~~-----~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g------~~~ 234 (428)
T PRK01029 166 ELWSVDYDGQN-----LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG------NQL 234 (428)
T ss_pred eEEEEcCCCCC-----ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC------Ccc
Confidence 45566655443 3334445556678899999975 2 2444443 57777887766544433222 123
Q ss_pred EEEEcCCCcEEEEEcc-CC----eEEEecCCCc--cceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCCeEEEe
Q 038702 84 RAIWGWDDSCIFIGNM-TR----TVEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVW 151 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~-d~----~i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~~w 151 (154)
...|+|||+.|+..+. +| .+..|++..+ .....+...... .....+|+| +++.|+..+ .+|...+|
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~-~~~~p~wSP-DG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG-TQGNPSFSP-DGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC-CcCCeEECC-CCCEEEEEECCCCCceEE
Confidence 4689999988876553 22 3445676643 122223222111 224578999 777666554 46654444
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=1.2e-05 Score=54.47 Aligned_cols=130 Identities=12% Similarity=0.019 Sum_probs=76.7
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe-eCC--CeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT-SFD--DTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
+..|.++|+.+++ ...+....+......|+|+|+.++.. +.+ ..|.++|+.++....+..... ...
T Consensus 212 ~~~Iyv~dl~tg~-----~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~------~d~ 280 (419)
T PRK04043 212 KPTLYKYNLYTGK-----KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG------IDV 280 (419)
T ss_pred CCEEEEEECCCCc-----EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC------ccC
Confidence 3467778876654 33333455566678899999876643 333 457777876665333222211 112
Q ss_pred EEEEcCCCcEEEEEcc-CC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC---------CeEEEe
Q 038702 84 RAIWGWDDSCIFIGNM-TR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG---------GQVYVW 151 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~-d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------~~i~~w 151 (154)
...|+|||+.|+..+. .+ .|.+.|+.+++..+.... ... ...|+| +++.|+..... ..|.+.
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~---g~~--~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH---GKN--NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC---CCc--CceECC-CCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 3469999987766653 33 577778877765333221 111 248999 77776655533 256776
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
|+
T Consensus 355 d~ 356 (419)
T PRK04043 355 ST 356 (419)
T ss_pred EC
Confidence 65
No 278
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=6.5e-07 Score=63.00 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=78.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe---------eCCCeEEEEeccccccceeEe
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT---------SFDDTIGIWSGVNFENTAMIH 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---------~~d~~v~~~~~~~~~~~~~~~ 71 (154)
+|.|...|+|.++|+.++.. ...+.-|+..|.++.|-...+++-.+ +.-+.+.+-|++++....+..
T Consensus 440 vAvGT~sGTV~vvdvst~~v----~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~ 515 (1062)
T KOG1912|consen 440 VAVGTNSGTVDVVDVSTNAV----AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRG 515 (1062)
T ss_pred EEeecCCceEEEEEecchhh----hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccccccc
Confidence 36799999999999998874 45556899999999997655544322 223457788999887776665
Q ss_pred ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 72 HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
-..+....+..++ .+..++||+....+.-+.+||+++.
T Consensus 516 l~~~despI~~ir--vS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 516 LQKPDESPIRAIR--VSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred CCCCCcCcceeee--ecccCceEEEEecccchHHHhhccc
Confidence 5555555666554 4677999999999999999998643
No 279
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.61 E-value=1.8e-05 Score=52.35 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=90.5
Q ss_pred eeecCC----CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC----CCeEEEEecccc-ccceeEee
Q 038702 2 ATSSTD----GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNF-ENTAMIHH 72 (154)
Q Consensus 2 ~~~~~d----~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~~~~~~~-~~~~~~~~ 72 (154)
+.|+.. +.|.+|++....... ..............++++|++++|++... ++.|..|++... ........
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l-~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTL-TLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEE-EEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCc-eEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 445555 689999995433211 11122234556678899999999999877 568999998775 33333322
Q ss_pred cCCCCceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCC-ccceeE---Ee----C----CCcCCcceEEEecCCCccEE
Q 038702 73 NNQTGRWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQ-RRSVAT---LQ----S----PYISAIPCRFHAHPHQVGTL 139 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~-~~~~~~---~~----~----~~~~~~~~~~~~~~~~~~~l 139 (154)
....+. ....++.+|++++|+++. .+|.+.++++.. +..... +. + ......+..+.++| +++++
T Consensus 82 ~~~~g~--~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v 158 (345)
T PF10282_consen 82 VPSGGS--SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFV 158 (345)
T ss_dssp EEESSS--CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEE
T ss_pred eccCCC--CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEE
Confidence 211111 233567899999988886 588999999986 332222 11 0 12334456789999 66665
Q ss_pred EEEc-CCCeEEEeeCC
Q 038702 140 AGAT-GGGQVYVWTSD 154 (154)
Q Consensus 140 ~~~~-~d~~i~~wd~~ 154 (154)
++.. ....|.+|+++
T Consensus 159 ~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 159 YVPDLGADRVYVYDID 174 (345)
T ss_dssp EEEETTTTEEEEEEE-
T ss_pred EEEecCCCEEEEEEEe
Confidence 5543 45688888763
No 280
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.58 E-value=4.3e-07 Score=57.94 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=77.2
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEE-EEccCCeEEEecCCCcccee
Q 038702 37 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIF-IGNMTRTVEVISPAQRRSVA 115 (154)
Q Consensus 37 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~~~~~~~~~~ 115 (154)
-.+|||+|+++++.+.- .+.+-|.++.+....+.-... +.-+.|..+..+++ ....++.|.+|++.+.+--.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldk------i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDK------IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHH------hhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 45799999999999876 777888887766544432221 11346777766554 45678899999999988777
Q ss_pred EEeCCCcCCcceEEEecCCCc-cEEEEEcCCCeEEEeeC
Q 038702 116 TLQSPYISAIPCRFHAHPHQV-GTLAGATGGGQVYVWTS 153 (154)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~~wd~ 153 (154)
.+.....+. ...+|+| ++ .+|.+...|-+|.+|.+
T Consensus 86 kIdeg~agl--s~~~WSP-dgrhiL~tseF~lriTVWSL 121 (447)
T KOG4497|consen 86 KIDEGQAGL--SSISWSP-DGRHILLTSEFDLRITVWSL 121 (447)
T ss_pred EeccCCCcc--eeeeECC-CcceEeeeecceeEEEEEEe
Confidence 776444333 5789999 55 56677778999999976
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.57 E-value=2.7e-05 Score=58.48 Aligned_cols=119 Identities=6% Similarity=-0.040 Sum_probs=75.1
Q ss_pred eEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeec-----C----CCCceEeEEEEEEcCCCc-EEEEEccCCeE
Q 038702 35 VHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHN-----N----QTGRWISSFRAIWGWDDS-CIFIGNMTRTV 103 (154)
Q Consensus 35 v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i 103 (154)
-..++++| ++..+++.+.++.|++||..+.......... . ..........++++|++. ++++-+.++.|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 35789999 5667777778899999998765433221110 0 000111233578899987 44555667899
Q ss_pred EEecCCCccceeEEeCC------------C-------cCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 104 EVISPAQRRSVATLQSP------------Y-------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 104 ~i~~~~~~~~~~~~~~~------------~-------~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++||+.++.......+. . ....+..+++++ +++++++-..+++|++||.+
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECC
Confidence 99999876532111000 0 011235678888 77888988999999999973
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.57 E-value=1.3e-07 Score=60.43 Aligned_cols=61 Identities=15% Similarity=0.301 Sum_probs=51.3
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF 64 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~ 64 (154)
|.+|+.|..+.+||+...+. ......+|...|..+...+.-+.+++++.||.|.+|++...
T Consensus 212 LfSg~~d~~vi~wdigg~~g---~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKG---TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EEeccccCceEEEeccCCcc---eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 46899999999999976543 13445599999999999999999999999999999998743
No 283
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.56 E-value=5e-06 Score=55.90 Aligned_cols=128 Identities=13% Similarity=0.187 Sum_probs=85.0
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee--CCCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
..+.++++.... ......-.++|...+|.|.++.|++.+ .+..+.++|++.. .......... . .+
T Consensus 255 snLyl~~~~e~~-----i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~r-----N--T~ 321 (561)
T COG5354 255 SNLYLLRITERS-----IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKR-----N--TI 321 (561)
T ss_pred ceEEEEeecccc-----cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCccc-----c--cc
Confidence 346666766433 121226689999999999988776654 6788999999877 2222221111 1 34
Q ss_pred EEcCCCcEEEEEccC---CeEEEecCCCcccee-EEeCCCcCCcceEEEecCCCccEEEEEc------CCCeEEEeeC
Q 038702 86 IWGWDDSCIFIGNMT---RTVEVISPAQRRSVA-TLQSPYISAIPCRFHAHPHQVGTLAGAT------GGGQVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~d~~i~~wd~ 153 (154)
.|+|.+++++.++-| |.+-+||........ .+.+.. +.-+.|+| +++++.+.. .|..|++||+
T Consensus 322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n----~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN----TSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC----ceEeeccC-CceEEEecCCCcccccCcceEEEEe
Confidence 689999999997755 679999987654433 454321 23457999 778776654 3788999986
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.53 E-value=3.3e-05 Score=48.50 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccc
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~ 63 (154)
.-+.++||||+.+|+.+...|+|+++|+..
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 456899999999999999999999999873
No 285
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.51 E-value=3.1e-05 Score=51.03 Aligned_cols=107 Identities=12% Similarity=0.018 Sum_probs=73.3
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC----------CCeEEEEeccccccceeEeecCC-C
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF----------DDTIGIWSGVNFENTAMIHHNNQ-T 76 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~v~~~~~~~~~~~~~~~~~~~-~ 76 (154)
++|.+.|..+.+ ......-...-..+ ++|+++.++.+.. +..|.+||..+.+....+..... .
T Consensus 27 ~~v~ViD~~~~~-----v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGR-----VLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCE-----EEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 789999988766 33333222222234 9999998877655 78999999999887765543211 0
Q ss_pred -CceEeEEEEEEcCCCcEEEEEc-c-CCeEEEecCCCccceeEEeCC
Q 038702 77 -GRWISSFRAIWGWDDSCIFIGN-M-TRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 77 -~~~~~~~~~~~~~~~~~l~~~~-~-d~~i~i~~~~~~~~~~~~~~~ 120 (154)
.........+++|+|++|+... . +..|.+.|+.+++.+.++.-+
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 0001112457899999998776 3 689999999999999888753
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=2.1e-06 Score=60.32 Aligned_cols=118 Identities=8% Similarity=0.031 Sum_probs=83.0
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE---------e-ecCCCCceEeEEEEEEcCCCcEEEEEccC
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---------H-HNNQTGRWISSFRAIWGWDDSCIFIGNMT 100 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 100 (154)
......|++|+....+++.|+.||.+++..+.+....... . .....++...+.-+.|+...+.|-++..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456789999999999999999999999988764322111 0 11122333344456899999999999999
Q ss_pred CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 101 RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 101 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
|.|.+|-+-.+.-...+.......+..+++|+. ++..++..-.||.|.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVI 140 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEE
Confidence 999999988776554444444555557889988 677666666665543
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.50 E-value=1.6e-05 Score=53.22 Aligned_cols=132 Identities=15% Similarity=0.067 Sum_probs=81.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
..++.+|.+..+|..+++. .-.. .... ..... ..+..++.++.+|.+..+|..+++..-...... .....
T Consensus 245 y~~~~~g~l~a~d~~tG~~----~W~~-~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~~~s 314 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGRV----LWKR-DASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK--YRQLT 314 (377)
T ss_pred EEEEcCCEEEEEECCCCcE----EEee-ccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc--CCccc
Confidence 3456788889999877653 1111 1111 11111 256778888899999999998876543221111 00001
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
. .. ..+..+++++.+|.++++|..+++.+..++.+..... ...... + +.|+.++.||.|+.+
T Consensus 315 s--p~--i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~-~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 A--PA--VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIA-SPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred c--CE--EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccc-cCCEEE--C-CEEEEEeCCceEEEe
Confidence 0 01 1366888899999999999999999888875443222 223333 2 457788899998865
No 288
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=0.00011 Score=47.62 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=88.2
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCC----------eEEEEEcCCCCEEEEeeC-CCeEEEEeccccccceeEeecC
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRA----------VHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
..|.|.++-++.... .........|.+. +....+.|+++++++... -.+|.+|++..+.........-
T Consensus 109 ~~g~v~v~p~~~dG~-l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 109 HSGSVSVYPLQADGS-LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred cCceEEEEEcccCCc-cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc
Confidence 346788888866422 1123344566666 889999999999888753 4469999998655432222111
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCCc-cceeEEeC-------CCcCCcceEEEecCCCccEEEEEc-C
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQR-RSVATLQS-------PYISAIPCRFHAHPHQVGTLAGAT-G 144 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~-~ 144 (154)
..+.- .-.+.|+|++++....+ .+++|.+|..... ..+..++. -.......++..+| ++++|.++. .
T Consensus 188 ~~G~G--PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg 264 (346)
T COG2706 188 KPGAG--PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRG 264 (346)
T ss_pred CCCCC--cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecCC
Confidence 11111 12568999999876655 6789999988763 22222221 12233346778888 888877665 3
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
...|.++.+
T Consensus 265 ~dsI~~f~V 273 (346)
T COG2706 265 HDSIAVFSV 273 (346)
T ss_pred CCeEEEEEE
Confidence 345665543
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.43 E-value=2.9e-05 Score=57.46 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=85.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc-------------cc--
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN-------------FE-- 65 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~-------------~~-- 65 (154)
+.+..+|.|.+........ ....... .-...|.+++||||+..++..+.++++.+....- +.
T Consensus 91 ~~~~~~Gdi~~~~~~~~~~--~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~ 168 (928)
T PF04762_consen 91 CIALASGDIILVREDPDPD--EDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESK 168 (928)
T ss_pred EEEECCceEEEEEccCCCC--CceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCc
Confidence 4566778888773221110 0033344 4567899999999999999999999888864320 00
Q ss_pred --------cceeE-e---ec------CCC-----CceE----eEEEEEEcCCCcEEEEEcc---C---CeEEEecCCCcc
Q 038702 66 --------NTAMI-H---HN------NQT-----GRWI----SSFRAIWGWDDSCIFIGNM---T---RTVEVISPAQRR 112 (154)
Q Consensus 66 --------~~~~~-~---~~------~~~-----~~~~----~~~~~~~~~~~~~l~~~~~---d---~~i~i~~~~~~~ 112 (154)
....+ + .. .+. ...+ ....+.|-.||.|+++.+- . +.+|||+.+ |+
T Consensus 169 ~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~ 247 (928)
T PF04762_consen 169 HVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE 247 (928)
T ss_pred eeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce
Confidence 00000 0 00 000 0000 2346789999999999874 2 579999976 55
Q ss_pred ceeEEeCCCcCCcceEEEecCCCccEEEEEcC---CCeEEEee
Q 038702 113 SVATLQSPYISAIPCRFHAHPHQVGTLAGATG---GGQVYVWT 152 (154)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~~wd 152 (154)
+..+.. ........++|-| .|++|++... ...|.+|.
T Consensus 248 L~stSE--~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 248 LQSTSE--PVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred EEeccc--cCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEe
Confidence 433332 2223335789999 7888887763 23455443
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=4.9e-07 Score=61.61 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=74.8
Q ss_pred CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc----eeEeecCCCCceEeEEEEEEcCCCcEEEEEccC
Q 038702 25 PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT----AMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT 100 (154)
Q Consensus 25 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 100 (154)
...+.+|...|+.+.--.+.+.|++++.|++|++|.++..... ........+...+. .+.|-.+.++++ +.|
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~--~igfL~~lr~i~--ScD 803 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIH--DIGFLADLRSIA--SCD 803 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCccc--ceeeeeccceee--ecc
Confidence 3445589999999888778899999999999999998753221 01111112222233 233445556665 458
Q ss_pred CeEEEecCCCccceeEEe-CCCcCCcceEEEecCCCccEEEEE-cCCCeEEEeeC
Q 038702 101 RTVEVISPAQRRSVATLQ-SPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYVWTS 153 (154)
Q Consensus 101 ~~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~wd~ 153 (154)
|.|++||.--++++..+. .+..+....-.+.-..+..+++.| +...+|+++|.
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da 858 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA 858 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeec
Confidence 999999998887776443 222222111122211133444444 67888888874
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=2e-05 Score=55.79 Aligned_cols=130 Identities=15% Similarity=0.084 Sum_probs=82.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
|+-|..+|.|++.+.+.. +...+.|... ..+|.++++++.||+|.+-.+-+.+.........+ +
T Consensus 52 ~~~GtH~g~v~~~~~~~~------~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rp----i 115 (846)
T KOG2066|consen 52 FALGTHRGAVYLTTCQGN------PKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRP----I 115 (846)
T ss_pred eeeccccceEEEEecCCc------cccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecCCc----c
Confidence 355777778887776543 2222344433 55799999999999999998887776654433222 1
Q ss_pred eEEEEEEcCC-----CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWD-----DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~-----~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
. .++++|+ .+.+++|+..| +.++.-+-.........+.......++.|. +++++-++.+| |++||.
T Consensus 116 k--sial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~ 186 (846)
T KOG2066|consen 116 K--SIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDT 186 (846)
T ss_pred e--eEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCC-cEEEec
Confidence 2 4567776 56788999888 777765422222222223333333678885 57888877765 578875
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.41 E-value=1.1e-06 Score=61.72 Aligned_cols=142 Identities=19% Similarity=0.196 Sum_probs=86.0
Q ss_pred eecCCCcEEEEEccCCCCCCCCCce-eecccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTK-VLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+.+..+.|++||.+.+.. +.. ..+|...|..++|+. --..+.+.+.|++|+.||................
T Consensus 175 asshg~~i~vwd~r~gs~----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~---- 246 (1081)
T KOG0309|consen 175 ASSHGNDIFVWDLRKGST----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF---- 246 (1081)
T ss_pred hhccCCceEEEeccCCCc----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccC----
Confidence 445667899999998775 443 348999999999977 3456788999999999998754322111111100
Q ss_pred eEEEEEEcCCC--cEEEEEccCCeEEEecCC---------C-ccceeEEeCCCcCCcceEEEecCC---------CccEE
Q 038702 81 SSFRAIWGWDD--SCIFIGNMTRTVEVISPA---------Q-RRSVATLQSPYISAIPCRFHAHPH---------QVGTL 139 (154)
Q Consensus 81 ~~~~~~~~~~~--~~l~~~~~d~~i~i~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l 139 (154)
..+..++-|-| .++.-.-.+..+.+++.+ + .+++.++.+|...+. .+.|-.. ..-.|
T Consensus 247 piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~--eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 247 PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL--EFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred cceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH--HHhhhhcccccCCCCccceeE
Confidence 12233444432 233222222344444433 2 356788888765543 3333221 22369
Q ss_pred EEEcCCCeEEEeeCC
Q 038702 140 AGATGGGQVYVWTSD 154 (154)
Q Consensus 140 ~~~~~d~~i~~wd~~ 154 (154)
++=+.|..+++|-++
T Consensus 325 VTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 325 VTWSKDQTLRLWPID 339 (1081)
T ss_pred EEeecCCceEeeecc
Confidence 999999999999874
No 293
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.4e-06 Score=55.89 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=62.0
Q ss_pred cccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCC-cEEEEEccCCeEEEec
Q 038702 30 SHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDD-SCIFIGNMTRTVEVIS 107 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~~ 107 (154)
+|...|.+++|+|..+ ++..++.+..|++.|+++......+.... ...+++|.-+. +++..|-..|.|.|||
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~------~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN------QIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC------CceeeeeccCCcceeEEeccCceEEEEE
Confidence 7888999999999776 78889999999999999887665554333 34577888765 5777888999999999
Q ss_pred CCCcc
Q 038702 108 PAQRR 112 (154)
Q Consensus 108 ~~~~~ 112 (154)
++..+
T Consensus 265 ~R~~~ 269 (463)
T KOG1645|consen 265 MRQPE 269 (463)
T ss_pred ccCCC
Confidence 98653
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.38 E-value=1.6e-06 Score=55.12 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=76.5
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCC---CceEeEEEEEEcCCC-cEEEEEccCCeEEE
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQT---GRWISSFRAIWGWDD-SCIFIGNMTRTVEV 105 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i 105 (154)
.|...|.++.|+.+.+.++++ .|-.|.+|+++-......+..-.++ .-.....+..|+|.. ..+..++..|.|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 477888999999988888776 6778999998765443222111111 000112245788864 56777888999999
Q ss_pred ecCCCccce------eEE--eCC------CcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 106 ISPAQRRSV------ATL--QSP------YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 106 ~~~~~~~~~------~~~--~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
-|+++..+. ... .+- ........+.|++ +++++++-+. -++++||.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEec
Confidence 999853221 111 110 0111235788998 7788887766 48999996
No 295
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=0.00017 Score=46.71 Aligned_cols=141 Identities=13% Similarity=0.146 Sum_probs=85.8
Q ss_pred cEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccc-cceeEe------ecCCCCceE
Q 038702 9 TACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFE-NTAMIH------HNNQTGRWI 80 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~-~~~~~~------~~~~~~~~~ 80 (154)
.|.+|++..+.........+ .-...-+-|.|+|++++.+..++ +++|.+|...... ....+. ..-....
T Consensus 168 ri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~-- 244 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN-- 244 (346)
T ss_pred eEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC--
Confidence 47888888665433222222 55566789999999998877765 8999999988741 111111 1111111
Q ss_pred eEEEEEEcCCCcEEEEEccC-CeEEEecCCC--ccceeEEeCCCcCCcceEEEecCCCccEEEEEcC-CCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMT-RTVEVISPAQ--RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d-~~i~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~~wd~ 153 (154)
..-.+..+++|++|.++... ..|.+|.+.. +++...-.....+..+..+.++| .+++|+++.+ ...|.+|.+
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFER 320 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEE
Confidence 22245679999999887632 3677777653 33222211222333356889999 6777777764 446777754
No 296
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.8e-05 Score=54.02 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=78.2
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc-----------CCe
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-----------TRT 102 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------d~~ 102 (154)
.=+-+.|||.|.+|++--.-| |.+|--++......+.|... + -+.|||..+||++-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~V-----q--~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGV-----Q--FIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCc-----e--eeecCCccceEEEecCCccccCcccCCCce
Confidence 446789999999999987776 88998777666666666542 2 3578999999998652 247
Q ss_pred EEEecCCCccceeEEeCCCcC-CcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 103 VEVISPAQRRSVATLQSPYIS-AIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 103 i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
++|||+++|...+.+...... ..-.-+.|+- ++.+++--.. ..|.+|+
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyE 332 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYE 332 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEe
Confidence 999999999988888753222 2213477887 6678776555 4667765
No 297
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=4.8e-05 Score=54.13 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=92.9
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC------------CEEEEeeCCCeEEEEeccccccceeEeecC
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG------------SSLATTSFDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
...|.+-|..+.+. ...+..|...|+.+.|.|.. -.++++...|.|.+||.........+.+..
T Consensus 34 hslV~VVDs~s~q~----iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~ 109 (1062)
T KOG1912|consen 34 HSLVSVVDSRSLQL----IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSN 109 (1062)
T ss_pred CceEEEEehhhhhh----hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCC
Confidence 35678888877664 44445788999999998821 156777889999999998877665554433
Q ss_pred CCCceEeEEEEEEcC---CC-cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 75 QTGRWISSFRAIWGW---DD-SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~---~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
. .+. .++|-+ +. ..|++-.....+-+|+..+|+.+-.....+ .+-.++.++|-+.+.+..-+..|.+.+
T Consensus 110 ~---~~q--dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~--~iLs~f~~DPfd~rh~~~l~s~g~vl~ 182 (1062)
T KOG1912|consen 110 D---SVQ--DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH--EILSCFRVDPFDSRHFCVLGSKGFVLS 182 (1062)
T ss_pred c---chh--heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC--cceeeeeeCCCCcceEEEEccCceEEE
Confidence 2 122 334433 34 466666777899999999998776554222 332568888888888888777777765
Q ss_pred ee
Q 038702 151 WT 152 (154)
Q Consensus 151 wd 152 (154)
-+
T Consensus 183 ~~ 184 (1062)
T KOG1912|consen 183 CK 184 (1062)
T ss_pred Ee
Confidence 43
No 298
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.33 E-value=0.00013 Score=45.51 Aligned_cols=134 Identities=10% Similarity=0.048 Sum_probs=79.4
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEE--EcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAY--FSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
++|+|..+|.++++. .-+. .......... ..+++..+++++.++.+..+|..+++..-........... .
T Consensus 1 ~~g~l~~~d~~tG~~----~W~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~-- 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGKE----LWSY-DLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-P-- 72 (238)
T ss_dssp -TSEEEEEETTTTEE----EEEE-ECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-E--
T ss_pred CCCEEEEEECCCCCE----EEEE-ECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-e--
Confidence 468899999987763 2222 2211122212 2335667777789999999999888766544432221111 0
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccceeEE-eCCCc--C-CcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL-QSPYI--S-AIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-~~~~~--~-~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...+..++.++.++.++.+|.++++.+-.. ..... . ......... +..++.+..++.|..+|++
T Consensus 73 ----~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 73 ----VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp ----EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETT
T ss_pred ----eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe---cCEEEEEeccCcEEEEecC
Confidence 113555566667889999999999988774 32211 1 111223332 4667777778888888863
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=0.00019 Score=48.84 Aligned_cols=111 Identities=6% Similarity=-0.042 Sum_probs=67.0
Q ss_pred CCeEEEEEcCCCCE-EEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEE-ccC--CeEEE
Q 038702 33 RAVHSAYFSPSGSS-LATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIG-NMT--RTVEV 105 (154)
Q Consensus 33 ~~v~~~~~~~~~~~-l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d--~~i~i 105 (154)
+......|+|+|+. ++..+. +..|.++|+.+++...+..... ......|+|||+.++.. +.+ ..|.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g------~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG------MLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC------cEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 37789999999985 554433 3468888988776655443211 12245699999866543 333 46788
Q ss_pred ecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEc-CCC--eEEEeeC
Q 038702 106 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGG--QVYVWTS 153 (154)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~~wd~ 153 (154)
+++.+++. ..+..... ......|+| +++.|+..+ ..+ .|++.|+
T Consensus 262 ~dl~~g~~-~~LT~~~~--~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 262 YDTNTKTL-TQITNYPG--IDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred EECCCCcE-EEcccCCC--ccCccEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 88877764 33432221 123467999 666555444 333 4666654
No 300
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=8.2e-06 Score=56.26 Aligned_cols=81 Identities=11% Similarity=0.100 Sum_probs=63.7
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
-...|..+.|+|.-.++|.+..+|.+.+..+. .++...+..++. .+. -+.+|.|||+.|+.|-.||+|++.|++.
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~---~v~-~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGE---NVT-ASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCC---ccc-eeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 45568889999999999999999999998887 444433332221 112 3678999999999999999999999999
Q ss_pred ccceeE
Q 038702 111 RRSVAT 116 (154)
Q Consensus 111 ~~~~~~ 116 (154)
+..+..
T Consensus 94 ~~~l~~ 99 (665)
T KOG4640|consen 94 GGRLVS 99 (665)
T ss_pred CCceec
Confidence 887766
No 301
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.8e-05 Score=53.80 Aligned_cols=71 Identities=15% Similarity=0.314 Sum_probs=54.8
Q ss_pred cCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc------CCe
Q 038702 32 KRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM------TRT 102 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~ 102 (154)
.++=.++-|+|.|++++.++. -|.+-+||+.+.+.+..+...+ +.-+.|+|||++++|+.. |+.
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-------tt~~eW~PdGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-------TTVFEWSPDGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-------ceEEEEcCCCcEEEEEeccccEEecCC
Confidence 456678999999999888775 5789999999866665444333 124689999999999874 677
Q ss_pred EEEecCC
Q 038702 103 VEVISPA 109 (154)
Q Consensus 103 i~i~~~~ 109 (154)
++||+..
T Consensus 384 ~Kiwhyt 390 (566)
T KOG2315|consen 384 IKIWHYT 390 (566)
T ss_pred eEEEEec
Confidence 8999875
No 302
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=6.4e-05 Score=51.52 Aligned_cols=133 Identities=12% Similarity=0.181 Sum_probs=84.1
Q ss_pred EEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccc-cccceeEeecCCCCceEeEEEE
Q 038702 10 ACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVN-FENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 10 v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
+.|+.++.... +.....-...|...+|-|.|+.|++-+. ..++.+|.+++ ............ ..+-.+
T Consensus 427 ~eIfrireKdI----pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~v 498 (698)
T KOG2314|consen 427 LEIFRIREKDI----PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTV 498 (698)
T ss_pred EEEEEeeccCC----CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceE
Confidence 45566655443 4555567889999999999998877554 35688888874 222222211111 112256
Q ss_pred EEcCCCcEEEEEc---cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC------CCeEEEeeC
Q 038702 86 IWGWDDSCIFIGN---MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG------GGQVYVWTS 153 (154)
Q Consensus 86 ~~~~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~~wd~ 153 (154)
.|+|.|++++.+. ..|.+.++|..-..+..+-...| .....+.|+| .|+|+++++. |.--++|+.
T Consensus 499 fwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 499 FWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred EEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceECC-CCCEEEEeeehhhhccccceEEEEe
Confidence 7999999988764 56889999987433322222122 2335789999 8899999875 334455554
No 303
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.27 E-value=4.6e-06 Score=35.84 Aligned_cols=32 Identities=44% Similarity=0.656 Sum_probs=29.4
Q ss_pred ecccCCeEEEEEcCCCCEEEEeeCCCeEEEEe
Q 038702 29 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 60 (154)
Q Consensus 29 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~ 60 (154)
..|...|.+++|++.++.+++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 36888999999999999999999999999996
No 304
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.22 E-value=0.00016 Score=50.79 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=48.8
Q ss_pred EEEEcCCCcEEEEEc-cCCeEEEecCCCccc------------eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 84 RAIWGWDDSCIFIGN-MTRTVEVISPAQRRS------------VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.+.++|||+++++++ .+.++.|.|+...+. ..+.. .+.-+...+|++ ++..+.+-.-|..|.-
T Consensus 325 GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve---vGlGPLHTaFDg-~G~aytslf~dsqv~k 400 (635)
T PRK02888 325 GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE---LGLGPLHTAFDG-RGNAYTTLFLDSQIVK 400 (635)
T ss_pred ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec---cCCCcceEEECC-CCCEEEeEeecceeEE
Confidence 467899999887766 578999999987553 22222 122235678888 7788888889999999
Q ss_pred eeCC
Q 038702 151 WTSD 154 (154)
Q Consensus 151 wd~~ 154 (154)
||++
T Consensus 401 wn~~ 404 (635)
T PRK02888 401 WNIE 404 (635)
T ss_pred EehH
Confidence 9974
No 305
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.19 E-value=9.7e-07 Score=60.88 Aligned_cols=141 Identities=11% Similarity=0.085 Sum_probs=86.6
Q ss_pred CCCcEEEEEccCCCCCCCCCceeec-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc-eeEeecCCCCceEeEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-AMIHHNNQTGRWISSF 83 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 83 (154)
.|..+.|||+.+.-..+.....+.+ ......+++|-.+.+++.+|.....++++|++..... ..+......+
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG------ 200 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQG------ 200 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhccc------
Confidence 3567999999876332222333333 4456668899888889999999999999999843322 1111111111
Q ss_pred EEEEcC-CCcEEEEEccCCeEEEecC-CCc-cceeEEeCCCc--CCcceEEEecCCCccEEEEEcC-CCeEEEeeCC
Q 038702 84 RAIWGW-DDSCIFIGNMTRTVEVISP-AQR-RSVATLQSPYI--SAIPCRFHAHPHQVGTLAGATG-GGQVYVWTSD 154 (154)
Q Consensus 84 ~~~~~~-~~~~l~~~~~d~~i~i~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-d~~i~~wd~~ 154 (154)
....| .+.|+++.. |+.|.+||. +.- .++..+..... ......++|+|....++++... .++|+++|+.
T Consensus 201 -~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 201 -ITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -ceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 12345 567776655 999999993 322 22322221111 1123678999977777777775 4788998863
No 306
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.17 E-value=0.00034 Score=46.34 Aligned_cols=93 Identities=19% Similarity=0.105 Sum_probs=67.3
Q ss_pred CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc----------CCeEEEecCCCccceeEEeCCCc-
Q 038702 54 DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM----------TRTVEVISPAQRRSVATLQSPYI- 122 (154)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------d~~i~i~~~~~~~~~~~~~~~~~- 122 (154)
++|.+.|..+.+....+...... . ...+|+++.++.+.. +..|.+||..+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P----~---~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP----N---PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC----c---eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 88999999988776655432211 1 126899998777665 67999999999999988875332
Q ss_pred ----CCcceEEEecCCCccEEEEEc-C-CCeEEEeeCC
Q 038702 123 ----SAIPCRFHAHPHQVGTLAGAT-G-GGQVYVWTSD 154 (154)
Q Consensus 123 ----~~~~~~~~~~~~~~~~l~~~~-~-d~~i~~wd~~ 154 (154)
......++++| ++++|.... . +..|.+.|++
T Consensus 100 ~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~ 136 (352)
T TIGR02658 100 RFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLE 136 (352)
T ss_pred hhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECC
Confidence 23335788999 777777655 4 7889998873
No 307
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.13 E-value=8e-06 Score=52.07 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=87.2
Q ss_pred ecCCCcEEEEEccCCCC----CCCCCceeecccCCeEEEEEcCC-CCEEEEeeCCCeEEEEeccccccc----eeE----
Q 038702 4 SSTDGTACIWDLRSMAT----DKPEPTKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENT----AMI---- 70 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~~~----~~~---- 70 (154)
.++|-.|.+|++..... ....+.........|++..|+|. .+.|..++..|.|++-|++..... ..+
T Consensus 189 SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~ 268 (460)
T COG5170 189 SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTI 268 (460)
T ss_pred eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhcc
Confidence 45667788998865432 00011112233567899999994 567778888999999999853221 000
Q ss_pred ---eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC-ccceeEEeCCC-----------cCCc--ceEEEecC
Q 038702 71 ---HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ-RRSVATLQSPY-----------ISAI--PCRFHAHP 133 (154)
Q Consensus 71 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~-----------~~~~--~~~~~~~~ 133 (154)
.+..-.+.......+.|+++|+++++-. --++++||.+. ..++.++..|. ...+ ...+.++.
T Consensus 269 D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg 347 (460)
T COG5170 269 DGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG 347 (460)
T ss_pred CcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC
Confidence 0100011111223568999999998765 34899999984 45677765431 1111 12355666
Q ss_pred CCccEEEEEcCCCeEEEe
Q 038702 134 HQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 134 ~~~~~l~~~~~d~~i~~w 151 (154)
+...+++|++.....+|
T Consensus 348 -d~~~v~sgsy~NNfgiy 364 (460)
T COG5170 348 -DDKHVLSGSYSNNFGIY 364 (460)
T ss_pred -Ccccccccccccceeee
Confidence 55777888876665554
No 308
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.11 E-value=0.00023 Score=52.90 Aligned_cols=135 Identities=10% Similarity=0.094 Sum_probs=79.2
Q ss_pred CcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEeEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWISSF 83 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
..++||+-+ +. ..... .-.+--.+++|.|.|+++++.-. ...|.+|.-...+...+.-...... ..+.
T Consensus 237 R~iRVy~Re-G~-----L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~--~~v~ 308 (928)
T PF04762_consen 237 RVIRVYSRE-GE-----LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEE--EKVI 308 (928)
T ss_pred eEEEEECCC-ce-----EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCC--ceee
Confidence 567888764 22 11111 22233347899999999988765 2335455433222222111111122 2345
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCcc--ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRR--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.+.|++++..|+....|. |.+|...... +.+.+.-...... ..+.|+|.++..|...+.+|.+..++
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~-~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESV-NFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCC-CceEECCCCCCEEEEEecCCcEEEEE
Confidence 789999999999977665 9999887654 2233332222222 34899998888888888777766554
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.09 E-value=0.00061 Score=50.91 Aligned_cols=141 Identities=11% Similarity=0.133 Sum_probs=82.6
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc----ccccc---------
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV----NFENT--------- 67 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~----~~~~~--------- 67 (154)
+.+..+|.|.+-|..+.. .... .-...|.+++|+|+.+.++..+..+++.+..-. .-+..
T Consensus 84 ~v~~~~G~iilvd~et~~------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk 157 (1265)
T KOG1920|consen 84 CVITALGDIILVDPETLE------LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSK 157 (1265)
T ss_pred EEEecCCcEEEEcccccc------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccc
Confidence 345667777777665543 2333 456789999999999999999888888775431 00000
Q ss_pred -eeEeecC------------------CCCc-------eEeEEEEEEcCCCcEEEEEc-----cCCeEEEecCCCccceeE
Q 038702 68 -AMIHHNN------------------QTGR-------WISSFRAIWGWDDSCIFIGN-----MTRTVEVISPAQRRSVAT 116 (154)
Q Consensus 68 -~~~~~~~------------------~~~~-------~~~~~~~~~~~~~~~l~~~~-----~d~~i~i~~~~~~~~~~~ 116 (154)
...+... .... .-.-..+.|..||+++++.. ..++|++||.+ +.+ ..
T Consensus 158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns 235 (1265)
T KOG1920|consen 158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NS 235 (1265)
T ss_pred cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hc
Confidence 0000000 0000 00111378999999999843 33799999987 432 22
Q ss_pred EeCCCcCCcceEEEecCCCccEEEEEc---CCCeEEEee
Q 038702 117 LQSPYISAIPCRFHAHPHQVGTLAGAT---GGGQVYVWT 152 (154)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~wd 152 (154)
...+. ......++|-| .|..+++-. .|+.|.++.
T Consensus 236 ~se~~-~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 236 TSEPV-EGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred ccCcc-cccccceeecC-CCCeEeeeeecCCCCcEEEEe
Confidence 22122 22235688999 677776653 455677664
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00093 Score=48.32 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=79.1
Q ss_pred cEEEEEccCCCCCC-CCCc---eeec-----ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc---cccceeEeecCCC
Q 038702 9 TACIWDLRSMATDK-PEPT---KVLS-----HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN---FENTAMIHHNNQT 76 (154)
Q Consensus 9 ~v~vw~~~~~~~~~-~~~~---~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~---~~~~~~~~~~~~~ 76 (154)
.+++|++....... +.+. .... .+.++.+++.+.+-+.++.|-.+|.|..+.=.- ......+.+..
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-- 170 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-- 170 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC--
Confidence 58999998764433 3333 3333 356789999999999999999999998875321 11122222322
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+..+. .+.+..++..++.......|.+|.+....+......+++... .+..+++..++++++++ ..+.+||.
T Consensus 171 ~~pIT--gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~l-nCss~~~~t~qfIca~~--e~l~fY~s 242 (933)
T KOG2114|consen 171 KEPIT--GLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISL-NCSSFSDGTYQFICAGS--EFLYFYDS 242 (933)
T ss_pred CCCce--eeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccc-eeeecCCCCccEEEecC--ceEEEEcC
Confidence 22333 345666666544445566789998874332333222333333 45566664444444433 35666664
No 311
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.07 E-value=0.00074 Score=42.49 Aligned_cols=125 Identities=10% Similarity=0.005 Sum_probs=76.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
+.|+..+.+.--|..+++... +. --...|-+-+.- -|++++.|+..|.+.+.+..+++....+......+
T Consensus 27 ~igSHs~~~~avd~~sG~~~W----e~-ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk---- 96 (354)
T KOG4649|consen 27 VIGSHSGIVIAVDPQSGNLIW----EA-ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK---- 96 (354)
T ss_pred EEecCCceEEEecCCCCcEEe----eh-hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc----
Confidence 446666666666666654311 11 111222221111 47789999999999999999987665544332211
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEE
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL 139 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 139 (154)
.+....+++..+..++.|++.+..|.++..++...+-. +.+..+.+..|.++.++
T Consensus 97 -~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcg--G~~f~sP~i~~g~~sly 151 (354)
T KOG4649|consen 97 -VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG--GGTFVSPVIAPGDGSLY 151 (354)
T ss_pred -cceEEcCCCceEEEecCCCcEEEecccccceEEecccC--CceeccceecCCCceEE
Confidence 13456789999999999999999999998888776532 22223444555333333
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.07 E-value=8.8e-05 Score=53.68 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=84.9
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeec-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCceEe
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRWIS 81 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (154)
|+....+..+|+++.+ ..+... ..+.|.-++. +++.+.+|...|+|.+-|..+.+....+. |.. .+.
T Consensus 153 Gg~Q~~li~~Dl~~~~-----e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~----siS 221 (1118)
T KOG1275|consen 153 GGLQEKLIHIDLNTEK-----ETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG----SIS 221 (1118)
T ss_pred cchhhheeeeecccce-----eeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecccc----cee
Confidence 3334445556666544 222221 2223555554 77899999999999999999887766554 322 222
Q ss_pred EEEEEEcCCCcEEEEEcc---------CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 82 SFRAIWGWDDSCIFIGNM---------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~---------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
.|+-.|+.|++++. |..|++||++..+.+..+.-+.... -+.|+|.-...++..+.-|...+-|
T Consensus 222 ----DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~---flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 222 ----DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ---FLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred ----eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch---hhhhcccccceEEEEecccceeecc
Confidence 46678999999873 5678999999888776665443332 2567776667777777777665544
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.9e-05 Score=51.85 Aligned_cols=145 Identities=15% Similarity=0.122 Sum_probs=92.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
.+++.||.++.|--..-.... -...+..|.+.|.+++.+.++.++.+.+. |..++++|+++........-....+
T Consensus 24 iqASlDGh~KFWkKs~isGvE-fVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg--- 99 (558)
T KOG0882|consen 24 IQASLDGHKKFWKKSRISGVE-FVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG--- 99 (558)
T ss_pred EeeecchhhhhcCCCCcccee-ehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC---
Confidence 578999999999865422100 02233478899999999999999999777 9999999998866553332211111
Q ss_pred eEEEEEEcCCC--cEEE-EEccCCeEEEecCCCcc-ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDD--SCIF-IGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~--~~l~-~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
......++.. ..++ ....++.+.++|-.... +...+..-+...+ ..+.+.| .+..+++....|.|..|..
T Consensus 100 -~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV-~~i~y~q-a~Ds~vSiD~~gmVEyWs~ 173 (558)
T KOG0882|consen 100 -FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPV-KKIRYNQ-AGDSAVSIDISGMVEYWSA 173 (558)
T ss_pred -ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCce-EEEEeec-cccceeeccccceeEeecC
Confidence 0111122221 1333 33477899999987543 3334443333333 4567777 6678888888899999975
No 314
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.04 E-value=0.00064 Score=45.65 Aligned_cols=135 Identities=9% Similarity=0.029 Sum_probs=78.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeE-EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVH-SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+.++.++.|.-+|..+++. .-+.. ....+. ... .++..++.++.++.+..+|..+++..-....... +
T Consensus 69 ~v~~~~g~v~a~d~~tG~~----~W~~~-~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~----~ 137 (377)
T TIGR03300 69 YAADADGTVVALDAETGKR----LWRVD-LDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE----V 137 (377)
T ss_pred EEECCCCeEEEEEccCCcE----eeeec-CCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce----e
Confidence 4567788888888877764 11111 111111 112 2567888888999999999988776543322111 1
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCC---cceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISA---IPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.. .... .+..++.++.++.++.+|.++++.+-......... ........ + ..++.+..++.+..+|+
T Consensus 138 ~~-~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 138 LS-PPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDL 207 (377)
T ss_pred ec-CCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEc
Confidence 10 0011 24567777889999999999998776655322110 00111121 2 35667777788877775
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.02 E-value=2.1e-06 Score=59.28 Aligned_cols=143 Identities=16% Similarity=0.244 Sum_probs=89.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-CCCEEEEee----CCCeEEEEecccccc-ceeEeec-
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-SGSSLATTS----FDDTIGIWSGVNFEN-TAMIHHN- 73 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~d~~v~~~~~~~~~~-~~~~~~~- 73 (154)
++.|..+|.|-+-.++..... ....+.++..+.++++|++ |.+.|++|- .|..+.+||+.+.-. +......
T Consensus 73 lavG~atG~I~l~s~r~~hdS--s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHDS--SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhccccCceEEeecCCcccc--cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 467888899999888764431 1222338889999999999 566777763 266799999987521 1111000
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
........ .++|-.+.+++++|...+.++++|++.. .....+... .+ ..+...|-.++++++-. ||.|-+||
T Consensus 151 ~~~l~gqn--s~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk--~v--qG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 151 SSTLDGQN--SVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTK--YV--QGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cccccCcc--ccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhh--hc--ccceecCCCCCceeccc-cCceeecc
Confidence 01111112 4567778889999999999999999843 222222211 11 12344444557887655 99999999
No 316
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.99 E-value=0.00013 Score=49.41 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=76.7
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC----------
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT---------- 100 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------- 100 (154)
..-++...++||.|.+|++....+ |.+|.-........+.+.. +..+.|+|.++||.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~-------V~~~~fSP~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPD-------VKYLDFSPNEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeeecCC-------ceecccCcccceeeeeccCCccChhhccC
Confidence 566889999999999999887666 8889887766555555543 2345789999999885433
Q ss_pred -----CeEEEecCCCccceeEEeCCCcCCcce-EEEecCCCccEEEEEcCCCeEEEee
Q 038702 101 -----RTVEVISPAQRRSVATLQSPYISAIPC-RFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 101 -----~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+.+.+||+.++..+..+.........+ -+.|+- +..+.+-- ....+++++
T Consensus 103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e 158 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHE 158 (561)
T ss_pred CccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEe
Confidence 359999999999998888655542222 456665 33444322 233555555
No 317
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.99 E-value=0.0011 Score=44.86 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=77.4
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
.++.+|.+..+|..+++... +. ... ....+. ..+..++.++.++.+..+|..+++..-....... . ...
T Consensus 261 ~~~~~g~l~ald~~tG~~~W----~~-~~~-~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~-~~~- 329 (394)
T PRK11138 261 ALAYNGNLVALDLRSGQIVW----KR-EYG-SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-R-LLT- 329 (394)
T ss_pred EEEcCCeEEEEECCCCCEEE----ee-cCC-CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-C-ccc-
Confidence 44567777777777665311 11 111 111111 2466778888899999999987754322111100 0 000
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.... .+.+++.++.+|.++..|..+++.+...+....... ...... +..|..++.||.++.+++
T Consensus 330 -sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~-s~P~~~---~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 330 -APVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFL-SEPVVA---DDKLLIQARDGTVYAITR 393 (394)
T ss_pred -CCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcce-eCCEEE---CCEEEEEeCCceEEEEeC
Confidence 0011 256778889999999999999998877654322222 222222 347888899999988765
No 318
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=6.9e-05 Score=51.97 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=58.9
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
...+.|+|.-..+|++..+|.+-+..+. .+.+-++.-+...+. .+++|.| +|..|+.|-.||+|++.|+.
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~-~sL~W~~-DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVT-ASLCWRP-DGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccc-eeeeecC-CCCEEEEEecCCeEEEEEcc
Confidence 3467899999999999999999998887 666777765555554 6899999 89999999999999999863
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00021 Score=47.17 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=47.9
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCC-CEEEEeeCCCeEEEEeccccccc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENT 67 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~ 67 (154)
..++.+.+|+|.|+++... .....-...+.+++|.-+. +.+++|...|.|.+||++..+..
T Consensus 210 ~~asl~nkiki~dlet~~~-----vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 210 GLASLGNKIKIMDLETSCV-----VSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred eeeccCceEEEEeccccee-----eeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCch
Confidence 4578899999999998763 3333333889999998854 57778888999999999987655
No 320
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.96 E-value=0.0013 Score=41.15 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=66.6
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (154)
++++.++.+..||..+++. .-+.. ....+.... ...+..++.++.++.+..+|..+++..... ....+.....
T Consensus 40 ~~~~~~~~l~~~d~~tG~~----~W~~~-~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 40 YVASGDGNLYALDAKTGKV----LWRFD-LPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp EEEETTSEEEEEETTTSEE----EEEEE-CSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred EEEcCCCEEEEEECCCCCE----EEEee-cccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 4556888999999887763 22221 122111111 224556677778889999999888876553 2221111101
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 119 (154)
... .....+..++.+..++.|..+|+++|+.+-....
T Consensus 114 ~~~--~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 114 SSS--SPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp --S--EEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccc--CceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 111 1122377788888899999999999998777765
No 321
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.00084 Score=45.79 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=69.5
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe-eCCCe--EEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT-SFDDT--IGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..+.++++..++. .......+.-..-+|+|+|++++.. ..||. |.+.|+............. +.. .
T Consensus 218 ~~i~~~~l~~g~~-----~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~g-----i~~-~ 286 (425)
T COG0823 218 PRIYYLDLNTGKR-----PVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFG-----INT-S 286 (425)
T ss_pred ceEEEEeccCCcc-----ceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCc-----ccc-C
Confidence 3577778877653 2222333444566899999977665 45665 5556776666433221111 111 4
Q ss_pred EEEcCCCcEEEEEc-cCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 85 AIWGWDDSCIFIGN-MTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 85 ~~~~~~~~~l~~~~-~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
..|+|+|++++..+ ..| .|.+++...... ..+....... ....|+| ++.+++..+.
T Consensus 287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~--~~p~~Sp-dG~~i~~~~~ 345 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN--SNPVWSP-DGDKIVFESS 345 (425)
T ss_pred ccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC--cCccCCC-CCCEEEEEec
Confidence 56899999887665 344 366667665554 2332222222 2467888 7787776664
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00015 Score=52.46 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=48.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~ 63 (154)
|+.|-.-|.+.+|...+.+. ......|+.+|..+.|||+|..++++..-|.+.+|...-
T Consensus 74 La~gwe~g~~~v~~~~~~e~----htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTET----HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred HhhccccceeEEEecCCcee----eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 45677788899998876553 233348999999999999999999999999999998763
No 323
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.89 E-value=7.8e-05 Score=31.70 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=26.9
Q ss_pred ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 113 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
++..+..+.... .++.+++ .+.++++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i--~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPV--TSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCce--eEEEECC-CCCEEEEecCCCeEEEcC
Confidence 344454443332 5788888 568999999999999996
No 324
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.85 E-value=0.0022 Score=40.44 Aligned_cols=115 Identities=11% Similarity=0.081 Sum_probs=69.2
Q ss_pred cCCeEEEEEcCCCCEEEEeeCC--------CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEE-EEccCCe
Q 038702 32 KRAVHSAYFSPSGSSLATTSFD--------DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIF-IGNMTRT 102 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~ 102 (154)
....+.+++.|+|++.++.... |.+..++.. .+......... ..-.++|+|+++.|+ +-+..+.
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~------~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG------FPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES------SEEEEEEETTSSEEEEEETTTTE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc------cccceEECCcchheeecccccce
Confidence 3567899999999977776543 456666666 33222222211 122568999998665 5677788
Q ss_pred EEEecCCCccc-e---eEE-eCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 103 VEVISPAQRRS-V---ATL-QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 103 i~i~~~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
|..+++..... + ..+ ........+-.++++. ++++.++....+.|.++|.+
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC
Confidence 99888863221 1 222 1112222245688888 77888887788899998864
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00081 Score=47.50 Aligned_cols=118 Identities=11% Similarity=0.015 Sum_probs=82.1
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
+...|.--+++..+.+++.|+.-|.+.+|+-..+......... .++ .......+++..+++.|+..|.|-++.+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~---~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATG---ITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccc---eEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 4555555667778999999999999999997776654433211 111 223456788889999999999999998765
Q ss_pred ccc--eeEEeCCCc--CCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 111 RRS--VATLQSPYI--SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 111 ~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+ ...+...+. +...++++|++ ++..+.+|...|+|.+-.+
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEe
Confidence 322 111111112 44457899999 8899999999999887554
No 326
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.00015 Score=53.34 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=66.1
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (154)
+.|+..|.+-..|+..+-.. ..+-..-.++|++++|+.+|..++.|-.+|.|.+||+..+.....+. +..+..
T Consensus 103 vi~Ts~ghvl~~d~~~nL~~---~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t--- 176 (1206)
T KOG2079|consen 103 VIGTSHGHVLLSDMTGNLGP---LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT--- 176 (1206)
T ss_pred EEEcCchhhhhhhhhcccch---hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc---
Confidence 56777777777777653210 11222456899999999999999999999999999999877766554 222222
Q ss_pred eEEEEEEcCCCcEEEEEccCCe
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRT 102 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~ 102 (154)
..+.+.+..++..++++...|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc
Confidence 3344556667777888877775
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00021 Score=50.24 Aligned_cols=106 Identities=8% Similarity=0.066 Sum_probs=74.6
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce--eEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA--MIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~--~~~~~~~~~~ 78 (154)
++.|+.-|.+.+|+-..+.. ...+..+-.+.+..+..+++..++++|+..|.|.++-+....... ...+.. ..+
T Consensus 48 l~~GsS~G~lyl~~R~~~~~---~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d-~~~ 123 (726)
T KOG3621|consen 48 LAMGSSAGSVYLYNRHTGEM---RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD-KSH 123 (726)
T ss_pred EEEecccceEEEEecCchhh---hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc-ccC
Confidence 45688899999999776553 112222345667777889999999999999999999887743332 222211 112
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
...+.+++|++++..+++|...|+|..-.+.+
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 33455679999999999999999988776655
No 328
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.81 E-value=0.0041 Score=42.34 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=84.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcC-----CCCEEEEeeCCCeEEEEeccccccc--------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSP-----SGSSLATTSFDDTIGIWSGVNFENT-------- 67 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~~~~~~~~~~~-------- 67 (154)
++.||..|.++||+............-...-..+|..++.-+ +...|+. -.-..+.+|.+......
T Consensus 40 IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~ 118 (418)
T PF14727_consen 40 IIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQ 118 (418)
T ss_pred EEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcEEE
Confidence 478999999999999654432211222225678898888643 2233444 45667888887432211
Q ss_pred --eeEeecCCCCceEeEEEEEEcC----C-CcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEE
Q 038702 68 --AMIHHNNQTGRWISSFRAIWGW----D-DSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 68 --~~~~~~~~~~~~~~~~~~~~~~----~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (154)
..+.|.-+. ..+.++..| . ..++..-+.||.+.+|+-+..-....+.. ...+--+.+.+ ..+.|+
T Consensus 119 L~~~yeh~l~~----~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~---~llPgPl~Y~~-~tDsfv 190 (418)
T PF14727_consen 119 LELIYEHSLQR----TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD---FLLPGPLCYCP-RTDSFV 190 (418)
T ss_pred EEEEEEEeccc----ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC---CCCCcCeEEee-cCCEEE
Confidence 222333222 122233322 2 36888999999999999775543333432 22334467777 557788
Q ss_pred EEcCCCeEEEee
Q 038702 141 GATGGGQVYVWT 152 (154)
Q Consensus 141 ~~~~d~~i~~wd 152 (154)
+++.+..+.-|.
T Consensus 191 t~sss~~l~~Yk 202 (418)
T PF14727_consen 191 TASSSWTLECYK 202 (418)
T ss_pred EecCceeEEEec
Confidence 888887777664
No 329
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.80 E-value=0.00024 Score=32.59 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=28.9
Q ss_pred ccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc
Q 038702 31 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~ 62 (154)
....|.+++|+|...+++.++.+|.|.++.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 45679999999999999999999999999883
No 330
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.00024 Score=43.51 Aligned_cols=106 Identities=8% Similarity=-0.012 Sum_probs=62.0
Q ss_pred CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc
Q 038702 43 SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI 122 (154)
Q Consensus 43 ~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 122 (154)
-+..++.|+.+|.|.+|+........-..... .. ...+-+.-..++.+..+++.+|.||.|++...+.+.....|..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e--~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EE--SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcc-cc--cceeccccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence 45688999999999999876222111000000 00 0011111223556889999999999999998877766554432
Q ss_pred CCcceEEEecCCCccEEEEE--cCCCeEEEeeC
Q 038702 123 SAIPCRFHAHPHQVGTLAGA--TGGGQVYVWTS 153 (154)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~--~~d~~i~~wd~ 153 (154)
... ....... ..+.++.. +.|..++.|++
T Consensus 146 ~~~-e~~ivv~-sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 146 ESG-EELIVVG-SDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred CCc-ceeEEec-CCceEEeeccccchhhhhcch
Confidence 222 1222222 34566666 77778888876
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.77 E-value=0.0022 Score=45.48 Aligned_cols=101 Identities=9% Similarity=0.078 Sum_probs=68.6
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccccccce---------eEeecCCC
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTA---------MIHHNNQT 76 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~~~~~~---------~~~~~~~~ 76 (154)
++.|.+.|..+.............-......+.++|+|+++++++. +.++.+.|+.+.+... +.... +.
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-ev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-EL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee-cc
Confidence 4568888987621111114455566677889999999998877664 8999999998765311 11110 11
Q ss_pred CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 77 GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
....+..+|.++|....+-.-|..|-.|++..
T Consensus 374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 12334568999998888888999999999875
No 332
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.75 E-value=0.0037 Score=45.73 Aligned_cols=136 Identities=9% Similarity=-0.015 Sum_probs=71.1
Q ss_pred CCCcEEEEEccCCCCCCCCCceeeccc-CCeEEEEEcC-----CCCEEEEeeCCCeEEEEeccccccceeE--eecCCCC
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHK-RAVHSAYFSP-----SGSSLATTSFDDTIGIWSGVNFENTAMI--HHNNQTG 77 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-----~~~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~~~~ 77 (154)
....|+-.|+..++. ......|. .+|..++=.. ....-+.|-.+..+..||.+-....... .+.....
T Consensus 502 ~~~~ly~mDLe~GKV----V~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 502 NPNKLYKMDLERGKV----VEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred CCCceEEEecCCCcE----EEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence 445666677766653 22222232 2344433211 2334566777888999999865422211 1111111
Q ss_pred ceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 78 RWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
. .+++.-....-+|+.|+.+|.||+||--..+....+++...++ ..+..+. +|.++++.+. ..+.+++
T Consensus 578 ~---~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI--~~iDvt~-DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 578 N---NFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI--IGIDVTA-DGKWILATCK-TYLLLID 645 (794)
T ss_pred C---CceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe--eEEEecC-CCcEEEEeec-ceEEEEE
Confidence 1 2222223345588999999999999954333333333333333 4666666 6777665444 3444444
No 333
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00035 Score=46.95 Aligned_cols=112 Identities=14% Similarity=0.090 Sum_probs=77.2
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc-cccc-----eeEeecC--
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN-FENT-----AMIHHNN-- 74 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~-----~~~~~~~-- 74 (154)
.-.++.+.++|-...... ...+. -|..+|.++.++|.+..+++....|.|..|..+. .+.+ ....+..
T Consensus 118 ~~~sg~i~VvD~~~d~~q---~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL 194 (558)
T KOG0882|consen 118 LFKSGKIFVVDGFGDFCQ---DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL 194 (558)
T ss_pred cccCCCcEEECCcCCcCc---cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchh
Confidence 345778888887665431 22222 6999999999999999999999999999999873 1111 0111100
Q ss_pred --CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 75 --QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 75 --~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
-........++.|+|++..+.+-+.|..|++++.++++.++.+.
T Consensus 195 y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 195 YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred hcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 00001112256899999999999999999999999887665543
No 334
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=2.7e-05 Score=56.36 Aligned_cols=127 Identities=17% Similarity=0.109 Sum_probs=83.4
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC--eEEEEeccccccceeEeecCCCCc
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD--TIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
|+.|+..|.|+++++.++.. .....+|.++|+-+.-+.+|..+.+.+.-. ...+|++.....+. |....
T Consensus 1116 L~vG~~~Geik~~nv~sG~~----e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~---Hsf~e-- 1186 (1516)
T KOG1832|consen 1116 LAVGSHAGEIKIFNVSSGSM----EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPR---HSFDE-- 1186 (1516)
T ss_pred EEeeeccceEEEEEccCccc----cccccccccccccccccCCcceeeeeccccCchHHHhccccccCcc---ccccc--
Confidence 57799999999999999875 566669999999999999998777655432 47789887633222 11111
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCC-c-CCcceEEEecCCCccEEE
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPY-I-SAIPCRFHAHPHQVGTLA 140 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~ 140 (154)
.-.+.|+..-..-+.|+......+||+.++..+.++-... . ........|+| +..+++
T Consensus 1187 ---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP-~D~LIl 1246 (1516)
T KOG1832|consen 1187 ---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP-CDTLIL 1246 (1516)
T ss_pred ---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC-CcceEe
Confidence 1134677665555556666778999999998877743221 1 11113456888 444443
No 335
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.70 E-value=0.0042 Score=39.22 Aligned_cols=134 Identities=12% Similarity=0.076 Sum_probs=75.0
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEc-CCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFS-PSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..+.|..|+..++. ........ ...+.+. +++ .++.+...+ +.++|..+.+.................-.
T Consensus 20 ~~~~i~~~~~~~~~------~~~~~~~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND 90 (246)
T PF08450_consen 20 PGGRIYRVDPDTGE------VEVIDLPG-PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPND 90 (246)
T ss_dssp TTTEEEEEETTTTE------EEEEESSS-EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEE
T ss_pred CCCEEEEEECCCCe------EEEEecCC-CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCce
Confidence 34556666655432 22222222 6777787 564 555555555 45558887765554443211112234446
Q ss_pred EEEcCCCcEEEEEccC--------CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEEeeC
Q 038702 85 AIWGWDDSCIFIGNMT--------RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d--------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~ 153 (154)
+++.++|++.++.... |.|..++.. ++...... ....+..++|+| +++ ++++-+..+.|..+++
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---GLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---EESSEEEEEEET-TSSEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec---CcccccceEECC-cchheeecccccceeEEEec
Confidence 7899999977776533 556666666 44332222 123346889999 555 4567778888888875
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00026 Score=51.35 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=78.7
Q ss_pred cCCeEEEEEcCCCCEEEEeeC----CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEec
Q 038702 32 KRAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~----d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~ 107 (154)
.+.-+-..|+|..-+|+.++. .|+|.|+- .++++.. ....++...+++|+|..-.|+.|=..|.+.+|.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr------~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR------DVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc------ccccceehhhhccChHHHHHhhccccceeEEEe
Confidence 334445679998888887763 57777764 2333211 111223344679999988999988899999999
Q ss_pred CCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 108 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+.+.- +....+...+ ..+.|+| ++..++++..-|.+.+|..+
T Consensus 88 ~~~~e~h-tv~~th~a~i-~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETH-TVVETHPAPI-QGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cCCceee-eeccCCCCCc-eeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 8776654 3433344444 5789999 88999999999999999763
No 337
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.68 E-value=0.0047 Score=39.26 Aligned_cols=70 Identities=19% Similarity=0.129 Sum_probs=45.3
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEeccccccceeE---eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 38 AYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI---HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 38 ~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
++.+++|+.||.- .|..|-+-..++.-....- ...++.+. --+++|+||+..|+.+...|+|++||+...
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQ---WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQ---WRKLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCch---heEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 4566788777665 5666666555443222111 12222222 225789999999999999999999998753
No 338
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.64 E-value=0.0062 Score=39.53 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=69.3
Q ss_pred EEEEEccCCCCC----CCCCceeecccCCeEEEEEcCCCCEEEEee-----CCCeEEEEecc-ccccceeEeecCCCCce
Q 038702 10 ACIWDLRSMATD----KPEPTKVLSHKRAVHSAYFSPSGSSLATTS-----FDDTIGIWSGV-NFENTAMIHHNNQTGRW 79 (154)
Q Consensus 10 v~vw~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d~~v~~~~~~-~~~~~~~~~~~~~~~~~ 79 (154)
..+||.+++... .+.-..+.+|. .|+++|++|++.- ..|.|-+||.. +......+.......
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGP-- 101 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGP-- 101 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcCh--
Confidence 567888776531 11123444665 7999999999853 35789999998 334443443222211
Q ss_pred EeEEEEEEcCCCcEEEEEc------------------cCCeEEEecCCCccceeEEeC---CCcCCcceEEEecCCCccE
Q 038702 80 ISSFRAIWGWDDSCIFIGN------------------MTRTVEVISPAQRRSVATLQS---PYISAIPCRFHAHPHQVGT 138 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~------------------~d~~i~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 138 (154)
-.+.+.|+++.|+.+. ++..+-..|..+++.+....- ++...+ -.+++.+ ++..
T Consensus 102 ---Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi-RHLa~~~-~G~V 176 (305)
T PF07433_consen 102 ---HELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI-RHLAVDG-DGTV 176 (305)
T ss_pred ---hhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce-eeEEecC-CCcE
Confidence 2345788987776652 334555667777877766432 122222 4566666 4444
Q ss_pred EEEE
Q 038702 139 LAGA 142 (154)
Q Consensus 139 l~~~ 142 (154)
++..
T Consensus 177 ~~a~ 180 (305)
T PF07433_consen 177 AFAM 180 (305)
T ss_pred EEEE
Confidence 4433
No 339
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.63 E-value=0.0038 Score=40.46 Aligned_cols=103 Identities=16% Similarity=0.128 Sum_probs=67.9
Q ss_pred eEEEEEcC-CCCEEEEeeCCCe-EEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEc-----cCCeEEEec
Q 038702 35 VHSAYFSP-SGSSLATTSFDDT-IGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGN-----MTRTVEVIS 107 (154)
Q Consensus 35 v~~~~~~~-~~~~l~~~~~d~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~d~~i~i~~ 107 (154)
-..++.+| .+..++.+-.-|+ ..++|.++++....+... .+....- ..+|+++|++|++.- ..|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~--~gRHFyG-Hg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP--PGRHFYG-HGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC--CCCEEec-CEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 34667788 4555566655554 677899888877655321 1111111 357999999998863 457899999
Q ss_pred CC-CccceeEEeCCCcCCcceEEEecCCCccEEEEEc
Q 038702 108 PA-QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (154)
.. +.+.+.++..+.... ..+.+.| ++..|+.+.
T Consensus 84 ~~~~~~ri~E~~s~GIGP--Hel~l~p-DG~tLvVAN 117 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGP--HELLLMP-DGETLVVAN 117 (305)
T ss_pred CcCCcEEEeEecCCCcCh--hhEEEcC-CCCEEEEEc
Confidence 99 667777777665554 4677888 666666553
No 340
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.57 E-value=0.0031 Score=34.48 Aligned_cols=102 Identities=20% Similarity=0.097 Sum_probs=58.1
Q ss_pred eEEEEEcC---CC-CEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCC
Q 038702 35 VHSAYFSP---SG-SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 35 v~~~~~~~---~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~ 110 (154)
|++|++.. +| +.|++|+.|..|++|+-.. ...... +.. .+. .++-. .+..++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~---e~~-~v~--~L~~~-~~~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT---ETD-KVT--SLCSL-GGGRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe---ccc-ceE--EEEEc-CCCEEEEEecCCEEEEEeCcc
Confidence 56666655 33 5899999999999997542 222221 111 122 22223 346788999999999997532
Q ss_pred ccceeEEeCCCcCCcceEEEec---CCCccEEEEEcCCCeEEE
Q 038702 111 RRSVATLQSPYISAIPCRFHAH---PHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~d~~i~~ 150 (154)
.+-..+..+. + .++++. .+...-|++|-.+|.|-+
T Consensus 73 --RlWRiKSK~~-~--~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 --RLWRIKSKNQ-V--TSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --eeeeeccCCC-e--EEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2223332222 2 233332 212236888999998753
No 341
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.55 E-value=0.0091 Score=39.34 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=74.3
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc-ceeEeecCCCCceE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-TAMIHHNNQTGRWI 80 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (154)
++..+.|.+|++...+. ..... .....+.++.. .+++++.|.....+.++....... ....... ....
T Consensus 103 ~~~g~~l~v~~l~~~~~----l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d-~~~~-- 173 (321)
T PF03178_consen 103 VAVGNKLYVYDLDNSKT----LLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARD-YQPR-- 173 (321)
T ss_dssp EEETTEEEEEEEETTSS----EEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEE-SS-B--
T ss_pred EeecCEEEEEEccCccc----chhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEec-CCCc--
Confidence 34457899999987651 23222 23335555555 467999999888888886554222 2223222 2222
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCCC-------cc-ceeEEeCCCcCCcceEE---EecCC--Cc-----cEEEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPAQ-------RR-SVATLQSPYISAIPCRF---HAHPH--QV-----GTLAGA 142 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~-------~~-~~~~~~~~~~~~~~~~~---~~~~~--~~-----~~l~~~ 142 (154)
...++.+-+++..++.+..+|.+.++.... +. .+.....-+.+....++ +..|. .. ..++.+
T Consensus 174 ~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~ 253 (321)
T PF03178_consen 174 WVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYG 253 (321)
T ss_dssp EEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEE
T ss_pred cEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEE
Confidence 334556665556899999999999987652 12 22222212222222444 33331 11 247778
Q ss_pred cCCCeEEE
Q 038702 143 TGGGQVYV 150 (154)
Q Consensus 143 ~~d~~i~~ 150 (154)
+.+|.|..
T Consensus 254 T~~G~Ig~ 261 (321)
T PF03178_consen 254 TVDGSIGV 261 (321)
T ss_dssp ETTS-EEE
T ss_pred ecCCEEEE
Confidence 88888873
No 342
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0018 Score=48.17 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=69.0
Q ss_pred CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCc
Q 038702 43 SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYI 122 (154)
Q Consensus 43 ~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~ 122 (154)
.+..++.|+..|.+...|+...-.+ +.........+ .+++|+.+|..++.|-.+|.|.+||...++.++.+..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v~~~V--tsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQNERVQGPV--TSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--hhcCCccCCcc--eeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 5667888888898888888765222 11111222223 3678999999999999999999999999988887764433
Q ss_pred CCc-ceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 123 SAI-PCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 123 ~~~-~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+.. ...+.+.. ++..+.++...|. +|.
T Consensus 174 p~t~vi~v~~t~-~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 174 PVTGVIFVGRTS-QNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ccceEEEEEEeC-CCcEEEEccCCCc--eEE
Confidence 222 13344554 4456777777775 454
No 343
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.01 Score=43.36 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=57.5
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCC-eEEEEEcCCCCEEEEeeCCC-----eEEEEecccccc---ce----
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRA-VHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFEN---TA---- 68 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~v~~~~~~~~~~---~~---- 68 (154)
+.|+.+|.|.+.+-.-.. ...+..+... |..+....+.++|++.+.|+ .+++|+++.... +.
T Consensus 39 vigt~~G~V~~Ln~s~~~-----~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~ 113 (933)
T KOG2114|consen 39 VIGTADGRVVILNSSFQL-----IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYE 113 (933)
T ss_pred EEeeccccEEEeccccee-----eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeee
Confidence 567777777666543211 1223344444 55554444556777766654 499999975421 21
Q ss_pred --eEeecCCC-CceEeEEEEEEcCCCcEEEEEccCCeEEEec
Q 038702 69 --MIHHNNQT-GRWISSFRAIWGWDDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 69 --~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~ 107 (154)
.+.+..+. +.+.. .++.+.+-+.++.|-.+|.|..+.
T Consensus 114 ~ri~~~~np~~~~p~s--~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 114 HRIFTIKNPTNPSPAS--SLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred eeeeccCCCCCCCcce--EEEEEccccEEEEEecCcEEEEEc
Confidence 22223331 22222 345677788999999999999884
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.46 E-value=0.0047 Score=33.81 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=41.5
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEec
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG 61 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~ 61 (154)
|++|++|..|++|+-.. ........+.|.++.-... ..|+.+..+|+|-+|+-
T Consensus 18 LlvGs~D~~IRvf~~~e-------~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 18 LLVGSDDFEIRVFKGDE-------IVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred EEEecCCcEEEEEeCCc-------EEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 57899999999998542 4444466777888887665 67999999999999975
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.46 E-value=0.012 Score=38.78 Aligned_cols=136 Identities=10% Similarity=0.138 Sum_probs=76.8
Q ss_pred CcEEEEEccCCCCCCCCCc--eeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccc-cceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPT--KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-NTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (154)
|.+.++++........+.. ......++|++++-- ++. ++.+ .++.+.+|++...+ .........+. .+. +
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~--~i~--s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPF--YIT--S 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSS--SEE--E
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceE--EEE--E
Confidence 8899999987411001122 223568899998865 444 4443 35789999998887 33222222211 222 2
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+ ...+.+++.|.....+.++.... ...+..+..........++.+-+ +++.++.+..+|.+.++..
T Consensus 135 l--~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 135 L--SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp E--EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE
T ss_pred E--eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEE
Confidence 2 22366888988877777775443 23233333223333345666765 3358999999999988753
No 346
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.37 E-value=0.02 Score=38.89 Aligned_cols=97 Identities=7% Similarity=-0.034 Sum_probs=58.2
Q ss_pred CCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcC
Q 038702 44 GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYIS 123 (154)
Q Consensus 44 ~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 123 (154)
+..++.++.++.+..+|..+++..-....... . .+ ...+..++.++.++.+..+|..+++.+-........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-----~--~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~ 326 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-----N--DF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR 326 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-----c--Cc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC
Confidence 55677777899999999988765432211110 0 01 114567777788999999999988765433211111
Q ss_pred CcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 124 AIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.. ...... +..+..++.||.+...|.
T Consensus 327 ~~-~sp~v~---~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 327 LL-TAPVLY---NGYLVVGDSEGYLHWINR 352 (394)
T ss_pred cc-cCCEEE---CCEEEEEeCCCEEEEEEC
Confidence 11 111221 356777888888888775
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.019 Score=39.95 Aligned_cols=128 Identities=8% Similarity=0.036 Sum_probs=65.2
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCC-------EEEEeeCCCeEEEEeccccccce---eEeec
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGS-------SLATTSFDDTIGIWSGVNFENTA---MIHHN 73 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~~~~~~~~~~~~---~~~~~ 73 (154)
+.....++-.|+..++ ....-.....|.-+.+.|+.. .-+.|-.|..|.-||++-..... ...+.
T Consensus 352 ~~~~~~l~klDIE~GK-----IVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGK-----IVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred CCCcCcceeeecccce-----eeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 3333445555555554 222222333366667777432 22345567788889988433311 11222
Q ss_pred CCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE
Q 038702 74 NQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (154)
...+. .+++.-....-+++.|+.+|.||+||.-.......+++....+. .+..+. ++..|+..
T Consensus 427 y~~k~---nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~--hVdvta-dGKwil~T 489 (644)
T KOG2395|consen 427 YSTKN---NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK--HVDVTA-DGKWILAT 489 (644)
T ss_pred ccccc---ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCcee--eEEeec-cCcEEEEe
Confidence 22221 22222233456899999999999999833333333444333333 344443 55555443
No 348
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.28 E-value=0.016 Score=43.95 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=73.5
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee---CCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS---FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..++|||-. +..+. ......+.=.+++|-|.|..+++-. .|+.|.++.-...+.....-........ +-.
T Consensus 222 RkirV~drE-g~Lns----~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~--ve~ 294 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNS----TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKE--VEE 294 (1265)
T ss_pred eeEEEeccc-chhhc----ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccc--hhe
Confidence 689999976 32211 0112233445899999999988853 3556887775544333221111111111 336
Q ss_pred EEEcCCCcEEEE---EccCCeEEEecCCCccc--eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 85 AIWGWDDSCIFI---GNMTRTVEVISPAQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 85 ~~~~~~~~~l~~---~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
++|+.++..|++ ......|++|-..+..- .+.+.-+.. .-+.|+|.....+..-..+|...++|
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEEEEecCCcEEEEE
Confidence 789999999888 44555699998775431 122221111 12567775555554444555554443
No 349
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.0017 Score=39.96 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=58.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC-CCC
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN-QTG 77 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~-~~~ 77 (154)
++.|+.+|.|.+|....... ..... +.....+-+.--.++.+..+++.|+.|+.|++...+..-...+.. ...
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~----~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGA----HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred EEeecccceEEEecCCccch----HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 46788999999998864322 11111 222222223333356688999999999999998776665444322 111
Q ss_pred ceEeEEEEEEcCCCcEEEEE--ccCCeEEEecCCC
Q 038702 78 RWISSFRAIWGWDDSCIFIG--NMTRTVEVISPAQ 110 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~--~~d~~i~i~~~~~ 110 (154)
. .......++.+..+ +.|..++.|++..
T Consensus 149 e-----~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 E-----ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred c-----eeEEecCCceEEeeccccchhhhhcchhh
Confidence 1 11123345556555 6677777777653
No 350
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=97.25 E-value=0.0036 Score=27.95 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCC---CEEEEeeCCCeEEEEeccc
Q 038702 33 RAVHSAYFSPSG---SSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 33 ~~v~~~~~~~~~---~~l~~~~~d~~v~~~~~~~ 63 (154)
+.+.+++|+|.+ .+|+.+-..+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999843 5888888889999999985
No 351
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.21 E-value=0.0031 Score=28.91 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.9
Q ss_pred ceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 126 PCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
...++|+| ..++|+.++.+|.|.++.+
T Consensus 14 v~~~~w~P-~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 14 VSCMSWCP-TMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred EEEEEECC-CCCEEEEEECCCeEEEEEC
Confidence 35789999 7799999999999999876
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.027 Score=38.70 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=68.6
Q ss_pred cccCCeEEEEEcCCCCEEEEee---CC-CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEE-ccCCe--
Q 038702 30 SHKRAVHSAYFSPSGSSLATTS---FD-DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIG-NMTRT-- 102 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~---~d-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~-- 102 (154)
.-...+..-+|+|++..++..+ .. ..+.++++.+++.......... .....|+|||++|+.. ..|+.
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~------~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN------NGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc------cCCccCCCCCCEEEEEECCCCCcc
Confidence 3445677788999998765543 22 4588899998887766653322 1245799999877655 45664
Q ss_pred EEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE-cCCCeEEE
Q 038702 103 VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYV 150 (154)
Q Consensus 103 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~ 150 (154)
|.++|+..++. ..+.. ...+...-.|+| +++.++-. +..|.-.+
T Consensus 264 iy~~dl~~~~~-~~Lt~--~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I 308 (425)
T COG0823 264 IYLMDLDGKNL-PRLTN--GFGINTSPSWSP-DGSKIVFTSDRGGRPQI 308 (425)
T ss_pred EEEEcCCCCcc-eeccc--CCccccCccCCC-CCCEEEEEeCCCCCcce
Confidence 66668777663 33432 222224678999 66666544 45554333
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.17 E-value=0.026 Score=36.22 Aligned_cols=139 Identities=13% Similarity=0.156 Sum_probs=76.7
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe---------
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH--------- 71 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~--------- 71 (154)
|+.|.++| +.+++..... ......+...|..+...|+-+.+++-+ |+.+.++++..........
T Consensus 10 L~vGt~~G-l~~~~~~~~~-----~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 10 LLVGTEDG-LYVYDLSDPS-----KPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred EEEEECCC-EEEEEecCCc-----cceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 46788888 8999983322 222223444499999999887777764 4999999988755443110
Q ss_pred --ecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc-----cceeEEeCCCcCCcceEEEecCCCccEEEEEcC
Q 038702 72 --HNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR-----RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
+.......+..+...-...+...+.......|.+|..... +..+.+.-+ ..+..++|.+ +.++.|..
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp---~~~~~i~~~~---~~i~v~~~ 156 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP---DPPSSIAFLG---NKICVGTS 156 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC---CCcEEEEEeC---CEEEEEeC
Confidence 0111111122222111233444444455668888877653 344555433 2335677764 56666655
Q ss_pred CCeEEEeeC
Q 038702 145 GGQVYVWTS 153 (154)
Q Consensus 145 d~~i~~wd~ 153 (154)
++ ..+.|+
T Consensus 157 ~~-f~~idl 164 (275)
T PF00780_consen 157 KG-FYLIDL 164 (275)
T ss_pred Cc-eEEEec
Confidence 43 344443
No 354
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.06 E-value=0.016 Score=42.70 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=61.0
Q ss_pred eeecCCCcEEEEEccCCCCCCCC-CceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceE
Q 038702 2 ATSSTDGTACIWDLRSMATDKPE-PTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWI 80 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
+.|-.++.+..||.+-...+... ...........+|++-+.+| ++|.|+.+|.||+||--..+-...+ ..-+.++
T Consensus 546 flGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~l---p~lG~pI 621 (794)
T PF08553_consen 546 FLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTAL---PGLGDPI 621 (794)
T ss_pred EEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcC---CCCCCCe
Confidence 35677888999999865421110 11122345567787777666 7899999999999994332211111 1223333
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
. .+..+.||+++++.+ +..+.+++.
T Consensus 622 ~--~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 622 I--GIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred e--EEEecCCCcEEEEee-cceEEEEEE
Confidence 3 556788999887765 445556554
No 355
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.97 E-value=0.087 Score=38.78 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEecccc---------cccee---E--e-ecCCCCceEeEEEEEEcCC---CcEE
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF---------ENTAM---I--H-HNNQTGRWISSFRAIWGWD---DSCI 94 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~---------~~~~~---~--~-~~~~~~~~~~~~~~~~~~~---~~~l 94 (154)
-.|..+.++|+|++++..+..|.+.+.=.+.. +.... . . .............+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 46889999999999999888775444332211 11100 0 0 1111222345567899996 4788
Q ss_pred EEEccCCeEEEecCCCc
Q 038702 95 FIGNMTRTVEVISPAQR 111 (154)
Q Consensus 95 ~~~~~d~~i~i~~~~~~ 111 (154)
+.-..|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 88899999999999743
No 356
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.0034 Score=46.23 Aligned_cols=112 Identities=11% Similarity=0.041 Sum_probs=69.9
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE-eecCCCCceEeEEEEEEcCCCcEEEEEccCC--eEEEe
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI-HHNNQTGRWISSFRAIWGWDDSCIFIGNMTR--TVEVI 106 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~i~ 106 (154)
.|...-+|++|+-..+.|+.|+..|.|+++++.++...... .|.. .+. .+.-+.+|..+++.+.-. -..+|
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S----avT--~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS----AVT--LVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc----ccc--cccccCCcceeeeeccccCchHHHh
Confidence 67888999999999999999999999999999987655332 2322 222 233455777766665433 46789
Q ss_pred cCCC-ccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 107 SPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 107 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
++.+ +...+++... ..+.|+. ....-+.|.......+||++
T Consensus 1173 ~~~s~~~~~Hsf~ed------~~vkFsn-~~q~r~~gt~~d~a~~YDvq 1214 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDED------KAVKFSN-SLQFRALGTEADDALLYDVQ 1214 (1516)
T ss_pred ccccccCcccccccc------ceeehhh-hHHHHHhcccccceEEEecc
Confidence 8864 3444444321 2334443 12223334444466677764
No 357
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.81 E-value=0.02 Score=38.39 Aligned_cols=96 Identities=17% Similarity=0.020 Sum_probs=55.3
Q ss_pred cCCCCEEEEe---------eCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 41 SPSGSSLATT---------SFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 41 ~~~~~~l~~~---------~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
|||+++++.. +..+.+.++|+++.+...+..... ......|+|+|+.++... ++.|.+.+..++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~------~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPP------KLQDAKWSPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EET------TBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcc------ccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence 4666666553 224568889998865544332211 112467999999988875 678999998766
Q ss_pred cceeEEe-C-------CC------c-CCcceEEEecCCCccEEEEEcC
Q 038702 112 RSVATLQ-S-------PY------I-SAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 112 ~~~~~~~-~-------~~------~-~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
+..+.-. + -. . ......+-|+| ++++|+....
T Consensus 74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~ 120 (353)
T PF00930_consen 74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRF 120 (353)
T ss_dssp EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEE
T ss_pred CeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEE
Confidence 4332211 1 00 0 11224678999 7788776653
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.81 E-value=0.09 Score=36.48 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=63.8
Q ss_pred CcEEEEEccCC-----CCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee-------Eeec-
Q 038702 8 GTACIWDLRSM-----ATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM-------IHHN- 73 (154)
Q Consensus 8 ~~v~vw~~~~~-----~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~-------~~~~- 73 (154)
..|+..|+... ....+...+.. ...-....+.++|+|+.++. +.||...++.....+.... ....
T Consensus 2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n 80 (443)
T PF04053_consen 2 NEIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGSGLSFVWSSRN 80 (443)
T ss_dssp TEEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE-SEEEE-TSS
T ss_pred CceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCceeEEEEecCc
Confidence 35667777654 11111112222 33446789999999998888 5677777776432111100 0000
Q ss_pred ----CCCCceEeE-----------E------EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEec
Q 038702 74 ----NQTGRWISS-----------F------RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH 132 (154)
Q Consensus 74 ----~~~~~~~~~-----------~------~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (154)
......+.. + .-.|. |.+|+..+. +.|.+||..+++.+..+... . ...+.|+
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~--vk~V~Ws 153 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG--GNLLGVKSS-DFICFYDWETGKLIRRIDVS--A--VKYVIWS 153 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE---SSSEEEEET-TEEEEE-TTT--EEEEESS---E---EEEEE-
T ss_pred cEEEEECCCeEEEEEcCccccceEEcCCcccceEEc--CcEEEEECC-CCEEEEEhhHcceeeEEecC--C--CcEEEEE
Confidence 000000100 0 11122 666666654 48999999999999988632 1 2578999
Q ss_pred CCCccEEEEEcCCCeEEEee
Q 038702 133 PHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 133 ~~~~~~l~~~~~d~~i~~wd 152 (154)
+ ++++++..+.+ .+.+++
T Consensus 154 ~-~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 154 D-DGELVALVTKD-SIYILK 171 (443)
T ss_dssp T-TSSEEEEE-S--SEEEEE
T ss_pred C-CCCEEEEEeCC-eEEEEE
Confidence 8 77888888765 555543
No 359
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.72 E-value=0.0089 Score=44.15 Aligned_cols=144 Identities=9% Similarity=0.051 Sum_probs=79.3
Q ss_pred CcEEEEEccCCCCCCCCCce--ee-cccCCeEEEEEcC---CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc---
Q 038702 8 GTACIWDLRSMATDKPEPTK--VL-SHKRAVHSAYFSP---SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR--- 78 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~--~~-~~~~~v~~~~~~~---~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~--- 78 (154)
|.+.||++.--+.+....+. .. .....+.-+.|.| +..++..+-.++.+++..........+..|......
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence 56778887653221111111 11 2344556666666 556777777889999888776554333222211000
Q ss_pred ---eEeEEEEEEcCCCcEEEEEccCCeEEEecCC-----CccceeEEeCCCcCCcceEEEecCC--------CccEEEEE
Q 038702 79 ---WISSFRAIWGWDDSCIFIGNMTRTVEVISPA-----QRRSVATLQSPYISAIPCRFHAHPH--------QVGTLAGA 142 (154)
Q Consensus 79 ---~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~ 142 (154)
.+.. -...+|||..++.++.||.+++|.+. ...++...+.|......|.+ ++.. .-.+++++
T Consensus 233 ~~~g~~~-l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itt 310 (1283)
T KOG1916|consen 233 FAEGVLK-LASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITT 310 (1283)
T ss_pred Hhhchhh-heeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEec
Confidence 0000 12369999999999999999888754 34556666655544432333 2220 00134444
Q ss_pred c-CCCeEEEeeC
Q 038702 143 T-GGGQVYVWTS 153 (154)
Q Consensus 143 ~-~d~~i~~wd~ 153 (154)
+ ....+++|..
T Consensus 311 td~nre~k~w~~ 322 (1283)
T KOG1916|consen 311 TDVNREEKFWAE 322 (1283)
T ss_pred ccCCcceeEeec
Confidence 4 5567888863
No 360
>PHA02713 hypothetical protein; Provisional
Probab=96.63 E-value=0.038 Score=39.43 Aligned_cols=59 Identities=7% Similarity=-0.009 Sum_probs=34.6
Q ss_pred CCcEEEEEccC------CeEEEecCCC-c--cceeEEeCCCcCCcceEEEecCCCccEEEEEcCCC--eEEEeeC
Q 038702 90 DDSCIFIGNMT------RTVEVISPAQ-R--RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG--QVYVWTS 153 (154)
Q Consensus 90 ~~~~l~~~~~d------~~i~i~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~~wd~ 153 (154)
+++..+.|+.+ ..+..||..+ . +.+..+..+... ..++.. ++.+.+.|+.++ .+..||+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~---~~~~~~--~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA---LHTILH--DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc---ceeEEE--CCEEEEEeeecceeehhhcCc
Confidence 56777777654 2467899886 3 334444322221 222222 568889999888 5666665
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.46 E-value=0.16 Score=34.88 Aligned_cols=100 Identities=16% Similarity=0.034 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCEEEEe-eCCC----eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC---------
Q 038702 35 VHSAYFSPSGSSLATT-SFDD----TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT--------- 100 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~-~~d~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------- 100 (154)
+....++|++++++.+ +..| .+++.|+++++......... ..-.+.|.++++.++....+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------~~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------KFSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------ESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------ccceEEEeCCCCEEEEEEeCcccccccCC
Confidence 3467899999988764 3333 59999999885543221111 11127899998876665422
Q ss_pred --CeEEEecCCCccce--eEEeCCCcCCcceEEEecCCCccEEEE
Q 038702 101 --RTVEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAG 141 (154)
Q Consensus 101 --~~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 141 (154)
..|+.|.+.+...- ..+...........+..++ ++++++.
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i 243 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFI 243 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEE
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEE
Confidence 24778888766443 3344333333235677787 6666554
No 362
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.37 E-value=0.16 Score=36.81 Aligned_cols=97 Identities=19% Similarity=0.282 Sum_probs=60.2
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEc--CCCCEEEEeeCCCeEEEEeccc-----ccc----ceeEeecC
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFS--PSGSSLATTSFDDTIGIWSGVN-----FEN----TAMIHHNN 74 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~~~~~~~-----~~~----~~~~~~~~ 74 (154)
....+.|||.+.... .....+...+.|.++.|. |+++.+++.+....|.++.-.. ..+ ...+.-..
T Consensus 49 ~~~~LtIWD~~~~~l---E~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~ 125 (631)
T PF12234_consen 49 SRSELTIWDTRSGVL---EYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISS 125 (631)
T ss_pred CCCEEEEEEcCCcEE---EEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeec
Confidence 345689999987542 122333568899999995 4889999999999999986531 111 11111112
Q ss_pred CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 75 QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.+++.+. ...|.++|.+++.++ +.+.|+|-.
T Consensus 126 ~T~h~Ig--ds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 126 HTPHPIG--DSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CCCCCcc--ceeEecCCeEEEEeC--CEEEEECCC
Confidence 2223333 457898888776553 567777643
No 363
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.27 E-value=0.025 Score=37.91 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=50.6
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC-----CCc---
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ-----TGR--- 78 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~-----~~~--- 78 (154)
.+.+.++|+.+++ ...+......+....|||+|+.++... ++.|.+.+..+.....+...... ...
T Consensus 22 ~~~y~i~d~~~~~-----~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETGE-----ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTTE-----EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHH
T ss_pred ceeEEEEecCCCc-----eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceec
Confidence 3567888888754 233333367889999999999988874 56799998876643322211100 000
Q ss_pred ----eEeEEEEEEcCCCcEEEEEc
Q 038702 79 ----WISSFRAIWGWDDSCIFIGN 98 (154)
Q Consensus 79 ----~~~~~~~~~~~~~~~l~~~~ 98 (154)
.-..-.+-|+||+++|+...
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred cccccccccceEECCCCCEEEEEE
Confidence 00111357999999888864
No 364
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.21 E-value=0.16 Score=32.54 Aligned_cols=134 Identities=11% Similarity=0.088 Sum_probs=75.8
Q ss_pred CCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE-E
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF-R 84 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (154)
.++...+||..+.+ ....+...+.=..++ .+++.|+.+.....+..+|..+.+....+.... .+..+..+ .
T Consensus 108 k~~~~f~yd~~tl~-----~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNE 179 (264)
T PF05096_consen 108 KEGTGFVYDPNTLK-----KIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNE 179 (264)
T ss_dssp SSSEEEEEETTTTE-----EEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEE
T ss_pred cCCeEEEEccccce-----EEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEECCCcEe
Confidence 46778888887654 333344444445555 478888888888899999998876654443221 11122111 2
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccceeEEeC----------C---CcCCcceEEEecCCCccEEEEEcCCCeE
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQS----------P---YISAIPCRFHAHPHQVGTLAGATGGGQV 148 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i 148 (154)
+.|- +|...|-.=....|...|..+|+....+.. . ....+-..++++|..+.+++||-.=..+
T Consensus 180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~l 255 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKL 255 (264)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEE
T ss_pred EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCce
Confidence 2333 566666555666777778888877665531 0 1123347899999888888998654433
No 365
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.17 E-value=0.17 Score=32.40 Aligned_cols=64 Identities=8% Similarity=-0.034 Sum_probs=46.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccccccee
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAM 69 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~ 69 (154)
+.|...|.+++.+..++.. ...+......-......+++..+..++.|+.....|.++......
T Consensus 67 V~GCy~g~lYfl~~~tGs~----~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 67 VLGCYSGGLYFLCVKTGSQ----IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred EEEEccCcEEEEEecchhh----eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 5688899999999998864 333332222222345677999999999999999999988766544
No 366
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.28 Score=34.70 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=53.0
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEeccc---------cccceeEee------cCCCCceEeEEEEEEcCCC---cEE
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVN---------FENTAMIHH------NNQTGRWISSFRAIWGWDD---SCI 94 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~---------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~l 94 (154)
-.|..+..++.|..++-++.+|.+.++-.+. ++.....+. .......+....++|+|+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 4567788899999999999999776654332 211111110 0011123444567899975 577
Q ss_pred EEEccCCeEEEecCCCccce
Q 038702 95 FIGNMTRTVEVISPAQRRSV 114 (154)
Q Consensus 95 ~~~~~d~~i~i~~~~~~~~~ 114 (154)
..-..|+++|+||+.....+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 77788999999998865544
No 367
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.04 E-value=0.28 Score=33.63 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=67.1
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccce-------------------------eEeecCCC------------
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTA-------------------------MIHHNNQT------------ 76 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~-------------------------~~~~~~~~------------ 76 (154)
.|+.+.|+++..-|+.+...|.|.+|.....+... ...+....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998899999999999998765432111 00000000
Q ss_pred ---CceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCC------CcCCcceEEEec----CCCc---cEEE
Q 038702 77 ---GRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSP------YISAIPCRFHAH----PHQV---GTLA 140 (154)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~---~~l~ 140 (154)
...+. .++.+ +--+++.|..+|.+.|.|+|.+..+..-.-. ........+.|. ..++ -.++
T Consensus 83 ~~~~g~vt--al~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVT--ALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEE--EEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEe--EEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 00111 12333 5568999999999999999987766553211 112222333333 1122 3678
Q ss_pred EEcCCCeEEEeeC
Q 038702 141 GATGGGQVYVWTS 153 (154)
Q Consensus 141 ~~~~d~~i~~wd~ 153 (154)
.|...|.+.+|.+
T Consensus 160 vGTn~G~v~~fkI 172 (395)
T PF08596_consen 160 VGTNSGNVLTFKI 172 (395)
T ss_dssp EEETTSEEEEEEE
T ss_pred EEeCCCCEEEEEE
Confidence 8888899998865
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.02 E-value=0.37 Score=34.90 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=54.9
Q ss_pred CCeEEEEEcCCCCEEEEee------CCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC-CeEEE
Q 038702 33 RAVHSAYFSPSGSSLATTS------FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT-RTVEV 105 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~i 105 (154)
..+.+.+++|+|+.++..- .|..-.+|-.........+.... . .....|+|+|..+.+.... ..+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~----~--~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH----S--LTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC----C--CCCceECCCCCceEEEecCcceEEE
Confidence 4678899999999887665 24443444332222222221111 1 1245799998877766533 22333
Q ss_pred e-----------cCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 106 I-----------SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 106 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
. ++..++.... . ... ...+.|+| ++..++... ++.|.+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~~---~-~g~-Issl~wSp-DG~RiA~i~-~g~v~V 472 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVASR---V-PGP-ISELQLSR-DGVRAAMII-GGKVYL 472 (591)
T ss_pred eccCCCceEEEEeccCchhhhc---c-CCC-cCeEEECC-CCCEEEEEE-CCEEEE
Confidence 3 3333222211 1 112 36889999 777766544 356654
No 369
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.00 E-value=0.3 Score=33.67 Aligned_cols=90 Identities=20% Similarity=0.071 Sum_probs=56.3
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCceEeEEEE-------EEcC-----CCc-EEE
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRWISSFRA-------IWGW-----DDS-CIF 95 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~-----~~~-~l~ 95 (154)
.....+.++..+|.+++.++...-|+|.++|+.+.......+ ..+....++....- ..++ ... +++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 456678999999999998888888999999998876553332 11111111111000 0000 011 344
Q ss_pred EEccCCeEEEecCCCccceeEEeC
Q 038702 96 IGNMTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 96 ~~~~d~~i~i~~~~~~~~~~~~~~ 119 (154)
.+-.-|.|.||.++++..+..+.-
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEe
Confidence 566788999999999888777653
No 370
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.31 Score=33.24 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=82.2
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeC---CCeEEEEeccccccceeEeecCCCCceEe
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
..++.|.+.|..... ......-......++++|++..+..+.. ++++.+.|..+........... .
T Consensus 93 ~~~~~v~vid~~~~~-----~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~----- 161 (381)
T COG3391 93 GDSNTVSVIDTATNT-----VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-T----- 161 (381)
T ss_pred CCCCeEEEEcCcccc-----eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-C-----
Confidence 345677777755443 3333333336678999999988777665 6888888888777666533322 1
Q ss_pred EEEEEEcCCCcEEEEEc-cCCeEEEecCCCccceeEEe---CCCcCCcceEEEecCCCccE-EEEEcCC--CeEEEeeC
Q 038702 82 SFRAIWGWDDSCIFIGN-MTRTVEVISPAQRRSVATLQ---SPYISAIPCRFHAHPHQVGT-LAGATGG--GQVYVWTS 153 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~d--~~i~~wd~ 153 (154)
...++++|++..+.... .++.|.+.|........ -. .-.....+..+.+.| ++.. .++-..+ +.+...|.
T Consensus 162 P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 162 PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred cceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeC
Confidence 14668899999665554 78899999976655442 11 011122235677888 5553 3333333 46655543
No 371
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=95.92 E-value=0.13 Score=36.64 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCcEEEEEccCCeEEEecCCCccceeEE
Q 038702 90 DDSCIFIGNMTRTVEVISPAQRRSVATL 117 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 117 (154)
+..++++-+.|+++|+||+.+++++.+.
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 6789999999999999999999986654
No 372
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.82 E-value=0.31 Score=32.48 Aligned_cols=132 Identities=16% Similarity=0.214 Sum_probs=76.2
Q ss_pred CcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee----------CCCeEEEEeccccccceeEeecC---
Q 038702 8 GTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS----------FDDTIGIWSGVNFENTAMIHHNN--- 74 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~~~~~~~~~~~~~~~~~--- 74 (154)
+.+.++|..+++. .-.. ..+..-.+..+|+++.+++++ ...-|.+||..+......+.-+.
T Consensus 17 ~rv~viD~d~~k~-----lGmi-~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 17 SRVYVIDADSGKL-----LGMI-DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEEETTTTEE-----EEEE-EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred ceEEEEECCCCcE-----EEEe-ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 4688888776542 2221 223334467899999888743 24569999999876655443221
Q ss_pred -CCCceEeEEEEEEcCCCcEEEEEc--cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 75 -QTGRWISSFRAIWGWDDSCIFIGN--MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
....... ...++.++++++... -...|.|-|+..++.+.++..+. + ..+-.. .++-|.+-+.||++...
T Consensus 91 ~~~~~~~~--~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C--~~iyP~--~~~~F~~lC~DGsl~~v 162 (342)
T PF06433_consen 91 AQVVPYKN--MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--C--WLIYPS--GNRGFSMLCGDGSLLTV 162 (342)
T ss_dssp --BS--GG--GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--E--EEEEEE--ETTEEEEEETTSCEEEE
T ss_pred heeccccc--ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--E--EEEEec--CCCceEEEecCCceEEE
Confidence 1111111 235678888776654 34568888888888887776432 1 122222 23457777888877655
Q ss_pred eC
Q 038702 152 TS 153 (154)
Q Consensus 152 d~ 153 (154)
.+
T Consensus 163 ~L 164 (342)
T PF06433_consen 163 TL 164 (342)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 373
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.82 E-value=0.44 Score=34.15 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=69.9
Q ss_pred eecccCCeEEEEEcCC----CCEEEEeeCCCeEEEEeccc--cccceeE-eecCCC--CceEeEEEEEEcCCCcEEEEEc
Q 038702 28 VLSHKRAVHSAYFSPS----GSSLATTSFDDTIGIWSGVN--FENTAMI-HHNNQT--GRWISSFRAIWGWDDSCIFIGN 98 (154)
Q Consensus 28 ~~~~~~~v~~~~~~~~----~~~l~~~~~d~~v~~~~~~~--~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 98 (154)
..+.-..|..+.|.|- .-.+.+.-....|.+|.+.. .+..... ....+. .-.+-.-.+.|+|....|+.-.
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 3455567999999994 22566666788899999862 2222111 111111 1112222568999998887766
Q ss_pred cCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE-cCCCeEEEeeC
Q 038702 99 MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYVWTS 153 (154)
Q Consensus 99 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~wd~ 153 (154)
....--+++++.....-...-...+. ..+.+|.+ +++.|+.+ +..=.-++||-
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi~~~G~-IhCACWT~-DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADIKTSGL-IHCACWTK-DGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCceeEeeeeeeCCceEEEeccCCce-EEEEEecC-cCCEEEEEeCCeEEEEEecC
Confidence 55554556665433322222222333 36789999 66665544 44445678873
No 374
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.78 E-value=0.49 Score=34.43 Aligned_cols=112 Identities=12% Similarity=-0.002 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC-----
Q 038702 35 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA----- 109 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~----- 109 (154)
..-+.-+.-++.-++-+...++.|||.+...... ...-.....+..+.-...|+++.+++-+..+.|.+|.-.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~--~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEY--EESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEE--eeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 3344444444444444445679999998776322 221123344555555567899998888889999888431
Q ss_pred ----CccceeEEe--CCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 110 ----QRRSVATLQ--SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 110 ----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
+...+..+. .+....+ .+..|.+ ++.++ .|+ ++.+.++|
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~I-gds~Wl~-~G~Lv-V~s-GNqlfv~d 154 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPI-GDSIWLK-DGTLV-VGS-GNQLFVFD 154 (631)
T ss_pred cCCcccceeEEEEeecCCCCCc-cceeEec-CCeEE-EEe-CCEEEEEC
Confidence 223344432 2222222 5678887 55444 333 34666665
No 375
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.37 Score=32.84 Aligned_cols=138 Identities=16% Similarity=0.104 Sum_probs=77.9
Q ss_pred CCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee-CCCeEEEEeccccccceeEeecCCCCceEeEEEE
Q 038702 7 DGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRA 85 (154)
Q Consensus 7 d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (154)
++++.+.|..++.. ......-..+ ..++++|+|+.++... .++.+.+.|........ -...............
T Consensus 139 ~~~vsvid~~t~~~----~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i 212 (381)
T COG3391 139 NNTVSVIDAATNKV----TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGI 212 (381)
T ss_pred CceEEEEeCCCCeE----EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceE
Confidence 45666666655542 2222211233 8899999999776665 78899999976654442 1100000111122345
Q ss_pred EEcCCCcEEEEEccC---CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEE-cCCCeEEEee
Q 038702 86 IWGWDDSCIFIGNMT---RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYVWT 152 (154)
Q Consensus 86 ~~~~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~~wd 152 (154)
.++|++.++...... +.+...|..++.....-...... ....+..+| ++..+... ...+.+.+-|
T Consensus 213 ~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 213 AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDP-AGKAAYVANSQGGTVSVID 281 (381)
T ss_pred EECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECC-CCCEEEEEecCCCeEEEEe
Confidence 789999866655443 58888998887766542212222 234567777 55555444 3345555544
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.73 E-value=0.33 Score=32.07 Aligned_cols=110 Identities=10% Similarity=0.018 Sum_probs=63.7
Q ss_pred cccCCeEEEEEcCCCCEEEEeeC-CCeEEEEeccc--c---ccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC-e
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVN--F---ENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR-T 102 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~ 102 (154)
++-..-+.|+|||+++.|+.+.. .+.+.-+++.. . ............+.. =.++...+|.+.+.+...| .
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~P---DG~~vDadG~lw~~a~~~g~~ 236 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLP---DGMAVDADGNLWVAAVWGGGR 236 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCC---CceEEeCCCCEEEecccCCce
Confidence 44556678999999988777655 47788887753 1 111111111111100 0234466788776555554 8
Q ss_pred EEEecCCCccceeEEeCCCcCCcceEEEecCC-CccEEEEEcCC
Q 038702 103 VEVISPAQRRSVATLQSPYISAIPCRFHAHPH-QVGTLAGATGG 145 (154)
Q Consensus 103 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d 145 (154)
|..|+.. ++.+..+..+..... .++|-.. ...+++++...
T Consensus 237 v~~~~pd-G~l~~~i~lP~~~~t--~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 237 VVRFNPD-GKLLGEIKLPVKRPT--NPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEEECCC-CcEEEEEECCCCCCc--cceEeCCCcCEEEEEecCC
Confidence 9999998 998888886654443 3444332 23455555544
No 377
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.65 E-value=0.17 Score=31.67 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=41.4
Q ss_pred cCCCcEEEEEccCCeEEEecCCCccceeEE------eCC------CcCCcceEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 88 GWDDSCIFIGNMTRTVEVISPAQRRSVATL------QSP------YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 88 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..++.++++-+.+|.+++||+.+++.+..- -.. ........+..+. +|.-+++- .+|..+.|+.+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~l-sng~~y~y~~~ 95 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTL-SNGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEE-eCCCEEEeccc
Confidence 457889999999999999999987654332 110 1112224455664 56656554 45778888763
No 378
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.54 Score=33.38 Aligned_cols=73 Identities=11% Similarity=0.096 Sum_probs=46.5
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecC---------CCccceeEEe---------CCCcCCcceEEEecCCC--ccEEEE
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISP---------AQRRSVATLQ---------SPYISAIPCRFHAHPHQ--VGTLAG 141 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~---------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~l~~ 141 (154)
+.++..++.|..++-.+.+|.+.++=. +.++..-..+ ...........+|+|+. ...|..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 345677899999999999997665532 2333221111 11122223467899954 467888
Q ss_pred EcCCCeEEEeeCC
Q 038702 142 ATGGGQVYVWTSD 154 (154)
Q Consensus 142 ~~~d~~i~~wd~~ 154 (154)
-+.|..|++||++
T Consensus 186 L~sdnviRiy~lS 198 (741)
T KOG4460|consen 186 LTSDNVIRIYSLS 198 (741)
T ss_pred EecCcEEEEEecC
Confidence 8899999999974
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.44 E-value=0.67 Score=33.66 Aligned_cols=113 Identities=6% Similarity=-0.042 Sum_probs=55.0
Q ss_pred CeEEEEEcCCCCEEEEeeCC-CeEEEEeccccccceeEeecC-----CCCceEeEEEEEEcCCCcEEEEEccCCeEEE--
Q 038702 34 AVHSAYFSPSGSSLATTSFD-DTIGIWSGVNFENTAMIHHNN-----QTGRWISSFRAIWGWDDSCIFIGNMTRTVEV-- 105 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d-~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i-- 105 (154)
....-.|+|+|..+.+.... ..+++.+-............. ..... +..+.|+|||..++.-. ++.|.+
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~--Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGP--ISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCC--cCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 37788999998877776533 222232221111111111000 00112 33568999999887765 567776
Q ss_pred -ecCCCccc-e---eEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEee
Q 038702 106 -ISPAQRRS-V---ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 106 -~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
-....++. + ..+. .........+.|.+ ++.++ .+..++...+|.
T Consensus 475 Vvr~~~G~~~l~~~~~l~-~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 475 VEQTEDGQYALTNPREVG-PGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred EEeCCCCceeecccEEee-cccCCccccceEec-CCEEE-EEecCCCCceEE
Confidence 33334431 1 1111 11112125678988 55544 444444444443
No 380
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.39 E-value=0.49 Score=34.88 Aligned_cols=106 Identities=9% Similarity=0.047 Sum_probs=63.5
Q ss_pred CeeecCCCcEEEEEccCC------C---C------CCCCCceeecccCCeEEEEEc--CCCCEEEEeeCCCeEEEEeccc
Q 038702 1 MATSSTDGTACIWDLRSM------A---T------DKPEPTKVLSHKRAVHSAYFS--PSGSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~------~---~------~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~~~~~~~ 63 (154)
|+.|.+||.|.+|.++.- . . ....+.-........++++++ ...+++|+++....|.|+-...
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 578999999999977321 0 0 001122222456688999998 7788888888888888876654
Q ss_pred cccceeEeecCCCCceEeEEEEEEcC-----CCc-EEEEEccCCeEEEecC
Q 038702 64 FENTAMIHHNNQTGRWISSFRAIWGW-----DDS-CIFIGNMTRTVEVISP 108 (154)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~l~~~~~d~~i~i~~~ 108 (154)
..............+.+.. +.|-+ .|. .+++++-.|.+.+|++
T Consensus 197 ~~~r~~~~~s~~~~hNIP~--VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 197 VDERFYHVPSHQHSHNIPN--VSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccccccccccCCCe--eEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3221111111112222332 33433 233 7788888999888877
No 381
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=0.45 Score=31.04 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=61.1
Q ss_pred CCeEEEEEcCC-CCEEEEeeCCCe-EEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc-----CCeEEE
Q 038702 33 RAVHSAYFSPS-GSSLATTSFDDT-IGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-----TRTVEV 105 (154)
Q Consensus 33 ~~v~~~~~~~~-~~~l~~~~~d~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~i 105 (154)
..-..+.|+|. ..-++.+=.-|+ ..++|....+.+........ ....- .-.|+|||.+|...-. -|.|-+
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~--RHfyG-HGvfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG--RHFYG-HGVFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC--ceeec-ccccCCCCcEEEeecCCCCCCCceEEE
Confidence 33445677773 344444444443 55678777766654432111 00011 2368999999877543 368999
Q ss_pred ecCCCc-cceeEEeCCCcCCcceEEEecCCCccEEEEEc
Q 038702 106 ISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGAT 143 (154)
Q Consensus 106 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (154)
||.+.+ +.+.++..+..+. ..+.+.+ +++.++.+.
T Consensus 145 Yd~r~~fqrvgE~~t~GiGp--Hev~lm~-DGrtlvvan 180 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGP--HEVTLMA-DGRTLVVAN 180 (366)
T ss_pred EecccccceecccccCCcCc--ceeEEec-CCcEEEEeC
Confidence 999844 3455555554444 4677777 777776654
No 382
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.21 E-value=0.65 Score=32.18 Aligned_cols=145 Identities=14% Similarity=0.200 Sum_probs=67.6
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeec----cc----CCeEEEEEcCCCCEEEEeeC------CCeEEEEecccccccee
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLS----HK----RAVHSAYFSPSGSSLATTSF------DDTIGIWSGVNFENTAM 69 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~----~~----~~v~~~~~~~~~~~l~~~~~------d~~v~~~~~~~~~~~~~ 69 (154)
|-.++.|+|.|+.+... .++..+... +. ..-..+-.-|+|+.++++-. -|-+.+.|-++.+....
T Consensus 94 gL~SsrIyviD~~~dPr-~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~ 172 (461)
T PF05694_consen 94 GLRSSRIYVIDTKTDPR-KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGR 172 (461)
T ss_dssp BTTT--EEEEE--S-TT-S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE
T ss_pred eeccCcEEEEECCCCCC-CCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccce
Confidence 44677899999986432 222333321 11 22233444578888887432 23577777776554432
Q ss_pred EeecCCCCceEeEEEEEEcCCCcEEEEEc--------------------cCCeEEEecCCCccceeEEeCCCcCCcc--e
Q 038702 70 IHHNNQTGRWISSFRAIWGWDDSCIFIGN--------------------MTRTVEVISPAQRRSVATLQSPYISAIP--C 127 (154)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~--~ 127 (154)
..... +.....+..-|.|..+.++++. ....+.+||..+.+.++++.-......+ .
T Consensus 173 We~~~--~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEv 250 (461)
T PF05694_consen 173 WEKDR--GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEV 250 (461)
T ss_dssp --SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEE
T ss_pred eccCC--CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEE
Confidence 22211 1122334556777777777753 2467999999999999999865544333 4
Q ss_pred EEEecCCCccEEEEEcCCCeEEEe
Q 038702 128 RFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 128 ~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.+..+|....-++.+.-..+|..|
T Consensus 251 RflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 251 RFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EE-SSTT--EEEEEEE--EEEEEE
T ss_pred EecCCCCccceEEEEeccceEEEE
Confidence 555667444456666566666555
No 383
>PHA02713 hypothetical protein; Provisional
Probab=95.10 E-value=0.85 Score=32.90 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=15.5
Q ss_pred CCCEEEEeeCCC-----eEEEEeccccc
Q 038702 43 SGSSLATTSFDD-----TIGIWSGVNFE 65 (154)
Q Consensus 43 ~~~~l~~~~~d~-----~v~~~~~~~~~ 65 (154)
++...+.|+.++ ++..||..+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 567777777653 47778877653
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=0.49 Score=33.49 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=52.8
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecc----cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCc
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSH----KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGR 78 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
.|-.|..|.-||++-..... .....+| .....|.+-..+| ++++|+.+|.|++||--...-...++. -+.
T Consensus 399 vGLs~n~vfriDpRv~~~~k--l~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPg---LG~ 472 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNK--LAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPG---LGD 472 (644)
T ss_pred EeecCCceEEecccccCcce--eeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccc---cCC
Confidence 46678889999987544311 1111122 2334454444444 889999999999999732222222221 222
Q ss_pred eEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 79 WISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
.+. .+..+.+|++++..+ +..+.+.++
T Consensus 473 ~I~--hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 473 AIK--HVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cee--eEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 334466788776554 444554443
No 385
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.1 Score=39.91 Aligned_cols=88 Identities=9% Similarity=0.078 Sum_probs=52.5
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
.+..|+.|++..+..... ...........++++|+|.|.+++.|-..|++.-|...-.....+-+. +.....++
T Consensus 173 v~l~dlsl~V~~~~~~~~----~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~P--p~~e~yrv 246 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQ----NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEP--PVEENYRV 246 (1405)
T ss_pred hhccccchhhhhhhhhhh----hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCC--CcCCCcce
Confidence 344556666655543322 222235567889999999999999999999999887653322222111 11223455
Q ss_pred EEEEEcCCCcEEEE
Q 038702 83 FRAIWGWDDSCIFI 96 (154)
Q Consensus 83 ~~~~~~~~~~~l~~ 96 (154)
++++|-....+++.
T Consensus 247 l~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 247 LSVTWLSTQEFLVV 260 (1405)
T ss_pred eEEEEecceeEEEE
Confidence 56677655555444
No 386
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.83 E-value=1.2 Score=33.24 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=46.6
Q ss_pred eEEEEEEcCCCcEEEEEccCCeEEEecCC---------Cccc---eeEEe------CCCcCCcceEEEecCC--CccEEE
Q 038702 81 SSFRAIWGWDDSCIFIGNMTRTVEVISPA---------QRRS---VATLQ------SPYISAIPCRFHAHPH--QVGTLA 140 (154)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~d~~i~i~~~~---------~~~~---~~~~~------~~~~~~~~~~~~~~~~--~~~~l~ 140 (154)
.+..+..+|+|.+++..|..|...+.=.+ .++. .+++. ..........+.|+|. .+..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 34467889999999998887754332221 1111 11111 1122233467899995 257888
Q ss_pred EEcCCCeEEEeeCC
Q 038702 141 GATGGGQVYVWTSD 154 (154)
Q Consensus 141 ~~~~d~~i~~wd~~ 154 (154)
.-..|+++++||+.
T Consensus 166 vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 166 VLTSDNTLRLYDIS 179 (717)
T ss_pred EEecCCEEEEEecC
Confidence 89999999999973
No 387
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.74 E-value=1 Score=31.95 Aligned_cols=147 Identities=10% Similarity=0.013 Sum_probs=73.2
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccC--CeEEEEEcC--CCCEEEEee---------CCCeEEEEeccccccce
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKR--AVHSAYFSP--SGSSLATTS---------FDDTIGIWSGVNFENTA 68 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~--~~~~l~~~~---------~d~~v~~~~~~~~~~~~ 68 (154)
+.++.++.|.-+|.++++. .-+...... .-..+.-+| .+..++.++ .++.+.-+|..+++..-
T Consensus 114 ~v~~~~g~v~AlD~~TG~~----~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 114 FFGTFDGRLVALDAETGKQ----VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred EEecCCCeEEEEECCCCCE----eeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 3456788888888887764 111111000 000111122 223444443 36788888988877654
Q ss_pred eEeecCCCC-----------------ceEeEEEEEEcCCCcEEEEEccCC------------------eEEEecCCCccc
Q 038702 69 MIHHNNQTG-----------------RWISSFRAIWGWDDSCIFIGNMTR------------------TVEVISPAQRRS 113 (154)
Q Consensus 69 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~d~------------------~i~i~~~~~~~~ 113 (154)
......... ..+.. ..+..+.+..++.++.++ .|.-+|..+++.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~-~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA-SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccC-CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 333211100 00000 123344456677776554 788899999988
Q ss_pred eeEEeCCCcCC----cceEEEec---CCCc---cEEEEEcCCCeEEEeeC
Q 038702 114 VATLQSPYISA----IPCRFHAH---PHQV---GTLAGATGGGQVYVWTS 153 (154)
Q Consensus 114 ~~~~~~~~~~~----~~~~~~~~---~~~~---~~l~~~~~d~~i~~wd~ 153 (154)
+-......... ........ ..++ ..++.++.+|.+...|.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~ 318 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDR 318 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEEC
Confidence 76654211100 00000110 0122 25777888888887775
No 388
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.73 E-value=0.89 Score=31.29 Aligned_cols=146 Identities=12% Similarity=0.029 Sum_probs=73.2
Q ss_pred CeeecCCCcEEEEEccCCCCCCCCCceee--c------ccCCeEEEEEcC-----CC---CEEEEeeCCCeEEEEeccc-
Q 038702 1 MATSSTDGTACIWDLRSMATDKPEPTKVL--S------HKRAVHSAYFSP-----SG---SSLATTSFDDTIGIWSGVN- 63 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~---~~l~~~~~d~~v~~~~~~~- 63 (154)
++.|..+|.+.|.|++.... ..... . ....++++.|+- ++ -.+++|...|.+.+|.+.-
T Consensus 100 vaigy~~G~l~viD~RGPav----I~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 100 VAIGYESGSLVVIDLRGPAV----IYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp EEEEETTSEEEEEETTTTEE----EEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred EEEEecCCcEEEEECCCCeE----EeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 36789999999999976442 11100 1 244688898864 22 3788899999999998863
Q ss_pred cccce--e-EeecCCCCceEeEEEEEEcC--------------------CCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 64 FENTA--M-IHHNNQTGRWISSFRAIWGW--------------------DDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 64 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
..... . ..........+..+.. ++. .-+-++....+..+|++...+.+......
T Consensus 176 ~~g~f~v~~~~~~~~~~~~i~~I~~-i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-- 252 (395)
T PF08596_consen 176 SNGRFSVQFAGATTNHDSPILSIIP-INADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-- 252 (395)
T ss_dssp GGG-EEEEEEEEE--SS----EEEE-EETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---
T ss_pred CCCceEEEEeeccccCCCceEEEEE-EECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee--
Confidence 21111 1 1111011111111111 110 01123334457789999988777665554
Q ss_pred CcCCcceEEEec----CCCccEEEEEcCCCeEEEeeC
Q 038702 121 YISAIPCRFHAH----PHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 121 ~~~~~~~~~~~~----~~~~~~l~~~~~d~~i~~wd~ 153 (154)
.....+....+- ...+..|+.-..+|.|+++.+
T Consensus 253 ~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 253 DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 222222223331 114556788889999999865
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.50 E-value=1.1 Score=31.13 Aligned_cols=88 Identities=23% Similarity=0.254 Sum_probs=49.5
Q ss_pred EEEEcCCCCEEEEeeCCCeEEE---Eeccc-c--ccceeEe----ecCCCCceEeEEE-EEE--------cCCCcEEEEE
Q 038702 37 SAYFSPSGSSLATTSFDDTIGI---WSGVN-F--ENTAMIH----HNNQTGRWISSFR-AIW--------GWDDSCIFIG 97 (154)
Q Consensus 37 ~~~~~~~~~~l~~~~~d~~v~~---~~~~~-~--~~~~~~~----~~~~~~~~~~~~~-~~~--------~~~~~~l~~~ 97 (154)
.++.+|+++.++.+..+..+.+ |+... . ....... -..+.+..+..+. +-+ .+|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678999999999887776665 54322 1 1111111 1112223444332 222 2456789999
Q ss_pred ccCCeEEEecCCCccceeEEeCCCcCCc
Q 038702 98 NMTRTVEVISPAQRRSVATLQSPYISAI 125 (154)
Q Consensus 98 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 125 (154)
..+|.|++|.. +|.++..-.-|+..+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~ 112 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVL 112 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceE
Confidence 99999999986 4444433333444443
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.44 E-value=0.89 Score=30.05 Aligned_cols=109 Identities=13% Similarity=0.111 Sum_probs=55.3
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEec-C
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVIS-P 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~-~ 108 (154)
.-.+.+..+.-+++|++++++.......-||.-.. ....|.......++ .+.|.|++.+.+.+ ..|.|++=+ .
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~~~riq--~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNSSRRIQ--SMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--SSS-EE--EEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCccceeh--hceecCCCCEEEEe-CCcEEEEccCC
Confidence 44577888889999999988877776667764321 22233333334444 56899998876655 788888776 2
Q ss_pred CCccceeE--EeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 109 AQRRSVAT--LQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 109 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
...+.... ........-...+++.+ +.+..++|+..
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg~G 253 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGGSG 253 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEESTT
T ss_pred CCccccccccCCcccCceeeEEEEecC-CCCEEEEeCCc
Confidence 22222111 11111222236789988 56677766554
No 391
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.36 E-value=0.84 Score=29.40 Aligned_cols=65 Identities=9% Similarity=-0.027 Sum_probs=39.8
Q ss_pred CCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccce
Q 038702 42 PSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSV 114 (154)
Q Consensus 42 ~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~ 114 (154)
..++.|+.|+.+| +.+++............... +..+...++-+.+++-+ |+.++++++......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~------I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~ 69 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSS------ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPV 69 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecce------EEEEEEecccCEEEEEc-CCccEEEEchhhccc
Confidence 4678999999999 88888833332222222111 22444556656555554 599999998755433
No 392
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.30 E-value=0.21 Score=22.36 Aligned_cols=27 Identities=4% Similarity=0.052 Sum_probs=22.0
Q ss_pred EEEEcCCC---cEEEEEccCCeEEEecCCC
Q 038702 84 RAIWGWDD---SCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 84 ~~~~~~~~---~~l~~~~~d~~i~i~~~~~ 110 (154)
.+.|+|++ .+|+.+-..+.+.++|+++
T Consensus 5 ~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 5 CCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred EEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46799754 4888888889999999995
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.14 E-value=1.6 Score=31.73 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=53.8
Q ss_pred CCCEEEEeeCCCe-----EEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC------eEEEecCCCc
Q 038702 43 SGSSLATTSFDDT-----IGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR------TVEVISPAQR 111 (154)
Q Consensus 43 ~~~~l~~~~~d~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~------~i~i~~~~~~ 111 (154)
+|...+.|+.||. +-.||.++.+-......... ..... ...-++...++|+.++ .+..||..+.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~----r~~~g-v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR----RSGHG-VAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc----eeeeE-EEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 6778888888864 55666665543322211110 01111 1223688888888554 5778888765
Q ss_pred c--ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCe-----EEEeeC
Q 038702 112 R--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ-----VYVWTS 153 (154)
Q Consensus 112 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-----i~~wd~ 153 (154)
+ .+..+....... .++.. ++.+++.|+.|+. |..||+
T Consensus 455 ~W~~~~~M~~~R~~~---g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSGF---GVAVL--NGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred ceeecCCcccccccc---eEEEE--CCEEEEECCccCCCccceEEEEcC
Confidence 4 333333221111 12222 5678888887762 555654
No 394
>PHA03098 kelch-like protein; Provisional
Probab=94.13 E-value=1.5 Score=31.40 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=48.6
Q ss_pred CCCEEEEeeCC------CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC--------CeEEEecC
Q 038702 43 SGSSLATTSFD------DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT--------RTVEVISP 108 (154)
Q Consensus 43 ~~~~l~~~~~d------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------~~i~i~~~ 108 (154)
+++..+.|+.+ ..+..||+.+.+-...... +.+.... . +...++..++.|+.+ ..+.+||.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r~~~--~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 463 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISHYGG--C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNP 463 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--CccccCc--e-EEEECCEEEEECCccCCCCCcccceEEEecC
Confidence 56666666632 3577888776432221111 1110001 1 122356666777643 23888998
Q ss_pred CCccc--eeEEeCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 109 AQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 109 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
.+.+- +..+..+.... ..... ++.+++.|+.+ ..+.+||+
T Consensus 464 ~~~~W~~~~~~~~~r~~~--~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 464 VTNKWTELSSLNFPRINA--SLCIF---NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred CCCceeeCCCCCcccccc--eEEEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence 76543 22221111111 11222 45677777654 46777775
No 395
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=0.34 Score=37.35 Aligned_cols=117 Identities=9% Similarity=0.038 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCCCEEEE--eeCCCeEEEEeccccccce-----eE-eecCCCCceEeEEEEEEcCCC-cEEEEEccCCeE
Q 038702 33 RAVHSAYFSPSGSSLAT--TSFDDTIGIWSGVNFENTA-----MI-HHNNQTGRWISSFRAIWGWDD-SCIFIGNMTRTV 103 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~--~~~d~~v~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i 103 (154)
-+|..+...+++...+. .+.+-.|..+|++...... .+ .+.......+....+.|+|.- ...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35556666677654433 3445579999998754332 11 122222334455577888864 345667789999
Q ss_pred EEecCCCccc-eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 104 EVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 104 ~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++..+..... ...+ .......+++|+| .+..++.|...|++.-|..
T Consensus 181 ~V~~~~~~~~~v~s~---p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF---PVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred hhhhhhhhhhhhccc---CcccceeeEEecc-ccceeeEecCCCeEEEeec
Confidence 9887763322 2222 2233347899999 8899999999999887643
No 396
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.06 E-value=0.88 Score=28.54 Aligned_cols=71 Identities=14% Similarity=-0.017 Sum_probs=44.4
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----eecC-------CCCceEeEEEEEEcCCCcEEEEEccCCe
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI----HHNN-------QTGRWISSFRAIWGWDDSCIFIGNMTRT 102 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 102 (154)
++..+. .+++++++-+.+|.+++||+.+.+..... .-.. .....+ ..+..+.+|.-+++-+ +|.
T Consensus 14 ~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i--~~~~lt~~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 14 PVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNI--TSCSLTSNGVPIVTLS-NGD 88 (219)
T ss_pred ceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcE--EEEEEcCCCCEEEEEe-CCC
Confidence 444444 47889999999999999999987653211 0000 112222 3445567787766654 567
Q ss_pred EEEecCC
Q 038702 103 VEVISPA 109 (154)
Q Consensus 103 i~i~~~~ 109 (154)
.+.|+..
T Consensus 89 ~y~y~~~ 95 (219)
T PF07569_consen 89 SYSYSPD 95 (219)
T ss_pred EEEeccc
Confidence 7888765
No 397
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=1.5 Score=30.72 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=67.6
Q ss_pred CCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 6 TDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 6 ~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
..|.+.-|.+...+.. .+..+. ...++|.++.|++|.+.++.--.+++|.+.+....+......+....+ ....+.
T Consensus 41 rSggatgvvvkgpndD--VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k-~~~IlG 117 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDD--VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK-NANILG 117 (657)
T ss_pred ecCCeeEEEEeCCCCC--CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC-cceeEE
Confidence 3444555555443321 133333 567799999999999999999999999999885544443332222111 113445
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCC-ccceeEEeCCCcCCcceEEEecCC
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPH 134 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 134 (154)
..|+.+ .-++.-...| +.+|.+.. .+.++..+.+..++. -+.|+++
T Consensus 118 F~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvn--Wy~yc~e 164 (657)
T KOG2377|consen 118 FCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVN--WYMYCPE 164 (657)
T ss_pred EEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCcc--EEEEccc
Confidence 577755 4444444333 56665442 223334444433332 3567773
No 398
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.88 E-value=1.2 Score=29.52 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=56.9
Q ss_pred eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEcc--------
Q 038702 28 VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNM-------- 99 (154)
Q Consensus 28 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 99 (154)
.+.+.+.+.++..-..+..|+++. .+ +.+++.++...................=.....|+|.+.++...
T Consensus 61 ~~~~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~ 138 (307)
T COG3386 61 VFPSPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSE 138 (307)
T ss_pred EEECCCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccc
Confidence 334455555555444444555543 22 44556544433222211110000001113455778877665443
Q ss_pred ---CCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCcc-EEEEEcCCCeEEEeeCC
Q 038702 100 ---TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTSD 154 (154)
Q Consensus 100 ---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~~wd~~ 154 (154)
-|.|+-++. .+.....+..+ -.....++|+| ++. ++++=+..+.|..|+++
T Consensus 139 ~~~~G~lyr~~p-~g~~~~l~~~~--~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 139 ERPTGSLYRVDP-DGGVVRLLDDD--LTIPNGLAFSP-DGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred cCCcceEEEEcC-CCCEEEeecCc--EEecCceEECC-CCCEEEEEeCCCCeEEEEecC
Confidence 122333343 34444433321 23446899999 554 44555566888877653
No 399
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.59 E-value=1.8 Score=30.67 Aligned_cols=114 Identities=8% Similarity=-0.008 Sum_probs=59.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee--cccCCeE--EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL--SHKRAVH--SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~--~~~~~v~--~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
..++.++.|.-.|..+++.......... .....+. .+... ++..++.++.++.|.-+|.++++..-.........
T Consensus 65 y~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~ 143 (488)
T cd00216 65 YFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP 143 (488)
T ss_pred EEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcC
Confidence 4566778888888887764221111000 0000010 01111 22678888899999999999887764443221100
Q ss_pred ceEeEEEEEEcC--CCcEEEEEc---------cCCeEEEecCCCccceeEEeC
Q 038702 78 RWISSFRAIWGW--DDSCIFIGN---------MTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 78 ~~~~~~~~~~~~--~~~~l~~~~---------~d~~i~i~~~~~~~~~~~~~~ 119 (154)
. .+.+.-+| .+..++.++ .++.+.-+|..+++.+-....
T Consensus 144 ~---~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 144 P---GYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred c---ceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 0 00000111 123444443 367889999999987766553
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.46 E-value=1.2 Score=28.29 Aligned_cols=98 Identities=5% Similarity=0.008 Sum_probs=58.5
Q ss_pred CCeEEEEEcCCCCEEEEe-eCCCeEEEEe--ccccccc---eeE--eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEE
Q 038702 33 RAVHSAYFSPSGSSLATT-SFDDTIGIWS--GVNFENT---AMI--HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVE 104 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~-~~d~~v~~~~--~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 104 (154)
+--..++|+.+.+.+..- +.+-+|.-|| ..++... .++ ....+.+..... .++...+|.+.++.-..++|.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PD-Gm~ID~eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPD-GMTIDTEGNLYVATFNGGTVQ 236 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCC-cceEccCCcEEEEEecCcEEE
Confidence 334578888777666543 4566776677 5444321 111 111111110000 122345788888888899999
Q ss_pred EecCCCccceeEEeCCCcCCcceEEEecC
Q 038702 105 VISPAQRRSVATLQSPYISAIPCRFHAHP 133 (154)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (154)
..|..+|+.+.+++-+.... .+++|-.
T Consensus 237 ~~dp~tGK~L~eiklPt~qi--tsccFgG 263 (310)
T KOG4499|consen 237 KVDPTTGKILLEIKLPTPQI--TSCCFGG 263 (310)
T ss_pred EECCCCCcEEEEEEcCCCce--EEEEecC
Confidence 99999999999998664443 4566654
No 401
>PRK10115 protease 2; Provisional
Probab=93.43 E-value=2.4 Score=31.56 Aligned_cols=111 Identities=7% Similarity=-0.028 Sum_probs=59.8
Q ss_pred CeEEEEEcCCCCEEEEeeC-----CCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC------Ce
Q 038702 34 AVHSAYFSPSGSSLATTSF-----DDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT------RT 102 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~-----d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~ 102 (154)
.+..+.++|++++|+.+.. .-.+++.|+.++....... .. +. ..++|.++++.|+....+ ..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~-----~~-~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DN-----VE-PSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cC-----cc-eEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 4667889999998876532 2358888887664221110 00 11 246899998866665432 35
Q ss_pred EEEecCCCc--cceeEEeCCCcCCcceEEEecCCCccEEEEEc---CCCeEEEeeC
Q 038702 103 VEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQVGTLAGAT---GGGQVYVWTS 153 (154)
Q Consensus 103 i~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~wd~ 153 (154)
|+.+++.++ +....+........ .. .+.+.++.+++..+ .++.+.+++.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~-~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VS-LHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EE-EEEcCCCCEEEEEEECCccccEEEEEC
Confidence 777788877 33333332222111 22 22232445443333 3456777663
No 402
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.34 E-value=1.2 Score=30.52 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=38.0
Q ss_pred EEcCCCCEEEEeeC-CC--eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcccee
Q 038702 39 YFSPSGSSLATTSF-DD--TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVA 115 (154)
Q Consensus 39 ~~~~~~~~l~~~~~-d~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 115 (154)
+|.++|++|+.++. || .+.+.|+.+.+...+....... .+....+|+.+.++.......|+-.|+.+.+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~-----~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN-----TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B------TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC-----ccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 56778977666554 54 4666677777655544322110 0112357788877665556688888998877544
Q ss_pred EEe
Q 038702 116 TLQ 118 (154)
Q Consensus 116 ~~~ 118 (154)
.+.
T Consensus 117 vy~ 119 (386)
T PF14583_consen 117 VYE 119 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.16 E-value=2 Score=29.92 Aligned_cols=117 Identities=9% Similarity=0.147 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCEEEEee--------------------CCCeEEEEeccccccceeEeecCCCCceEeEEEEEE--cCCCc
Q 038702 35 VHSAYFSPSGSSLATTS--------------------FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIW--GWDDS 92 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~~--------------------~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 92 (154)
-+.+-|.|.-+.++++. ...++.+||+.+.+....+..... + ...+.+.| .|+..
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~-g--~~pLEvRflH~P~~~ 259 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE-G--QMPLEVRFLHDPDAN 259 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT-E--EEEEEEEE-SSTT--
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC-C--CceEEEEecCCCCcc
Confidence 34566677666666643 246899999998888776654432 1 23334444 45444
Q ss_pred EEEEE-ccCCeEEEe-cCCCcc----ceeEEeCC--------Cc-------CCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 93 CIFIG-NMTRTVEVI-SPAQRR----SVATLQSP--------YI-------SAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 93 ~l~~~-~~d~~i~i~-~~~~~~----~~~~~~~~--------~~-------~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
+=+++ ...++|..| ....++ .+..+... .. ....+.+..+.++.-+.++.-.+|.|+.|
T Consensus 260 ~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqY 339 (461)
T PF05694_consen 260 YGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQY 339 (461)
T ss_dssp EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEE
T ss_pred ceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEE
Confidence 43333 234444444 323221 12222110 11 23457788888554445666689999999
Q ss_pred eCC
Q 038702 152 TSD 154 (154)
Q Consensus 152 d~~ 154 (154)
|++
T Consensus 340 DIS 342 (461)
T PF05694_consen 340 DIS 342 (461)
T ss_dssp E-S
T ss_pred ecC
Confidence 984
No 404
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.03 E-value=2.2 Score=29.94 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=30.2
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEecc
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 62 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~ 62 (154)
..++.|.+||..+++ ........ +|..+-|++++++++..+.+. +.+++..
T Consensus 123 ~~~~~i~~yDw~~~~-----~i~~i~v~-~vk~V~Ws~~g~~val~t~~~-i~il~~~ 173 (443)
T PF04053_consen 123 KSSDFICFYDWETGK-----LIRRIDVS-AVKYVIWSDDGELVALVTKDS-IYILKYN 173 (443)
T ss_dssp EETTEEEEE-TTT-------EEEEESS--E-EEEEE-TTSSEEEEE-S-S-EEEEEE-
T ss_pred ECCCCEEEEEhhHcc-----eeeEEecC-CCcEEEEECCCCEEEEEeCCe-EEEEEec
Confidence 344579999998766 44444433 389999999999999988664 6665543
No 405
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.96 E-value=2.1 Score=29.38 Aligned_cols=107 Identities=12% Similarity=-0.018 Sum_probs=47.0
Q ss_pred EEEcCCCCEEEEee-----CCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC-----------
Q 038702 38 AYFSPSGSSLATTS-----FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR----------- 101 (154)
Q Consensus 38 ~~~~~~~~~l~~~~-----~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----------- 101 (154)
=-|.|+|..+..-+ .+..|.-+|+.+.+....... .. +...--++++++++-=+.|.
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~------~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PW------CSHFMSSPDGKLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--S------EEEEEE-TTSSEEEEEE--------------
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-Cc------eeeeEEcCCCCEEEecCCCCCccccccccce
Confidence 35788888665422 244566677777655432221 11 12334467887775544332
Q ss_pred -----eEEEecCCCccceeEEe--------CCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 102 -----TVEVISPAQRRSVATLQ--------SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 102 -----~i~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.|+++++..++...... .++....-....|+|++...|.++...|...||
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 46667777655322111 011112224678999554556666778876666
No 406
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.69 E-value=2.3 Score=29.30 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=56.4
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC-----------eEEEEeccccccc--eeE
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD-----------TIGIWSGVNFENT--AMI 70 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~v~~~~~~~~~~~--~~~ 70 (154)
|++...++++|+.+++. ....+..... ..+.|.++++.|+....+. .|..|++.+.... .++
T Consensus 146 G~e~~~l~v~Dl~tg~~----l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf 220 (414)
T PF02897_consen 146 GSEWYTLRVFDLETGKF----LPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF 220 (414)
T ss_dssp TSSEEEEEEEETTTTEE----EEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE
T ss_pred CCceEEEEEEECCCCcC----cCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE
Confidence 44445688999887752 2222222211 2399999988776654332 3778888776554 333
Q ss_pred eecCCCCceEeEEEEEEcCCCcEEEEEcc---C-CeEEEecCCCc
Q 038702 71 HHNNQTGRWISSFRAIWGWDDSCIFIGNM---T-RTVEVISPAQR 111 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d-~~i~i~~~~~~ 111 (154)
..... . . ..+.+..++++++++.... + ..+.+.++..+
T Consensus 221 e~~~~-~-~-~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 221 EEPDE-P-F-WFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp C-TTC-T-T-SEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred eecCC-C-c-EEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 22221 1 1 1335677999998775432 2 45788888764
No 407
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=2.3 Score=27.97 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=34.1
Q ss_pred EEcCCCCEEEEeeCC-----CeEEEEeccccccc-eeEeecCCCCceEeEEEEEEcCCCcEEEEEc
Q 038702 39 YFSPSGSSLATTSFD-----DTIGIWSGVNFENT-AMIHHNNQTGRWISSFRAIWGWDDSCIFIGN 98 (154)
Q Consensus 39 ~~~~~~~~l~~~~~d-----~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (154)
.|||+|.+|++.-.| |.|=+||.+..-.. ..+.... +-.-.+.+.+||+.++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G-----iGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG-----IGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC-----cCcceeEEecCCcEEEEeC
Confidence 689999999876443 56889998743221 1221111 1122456889999887764
No 408
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.03 E-value=3.6 Score=29.99 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=52.7
Q ss_pred CCCEEEEeeCCC------eEEEEeccccccceeEeecCC-CCceEeEEEEEEcCCCcEEEEEccCC-----eEEEecCCC
Q 038702 43 SGSSLATTSFDD------TIGIWSGVNFENTAMIHHNNQ-TGRWISSFRAIWGWDDSCIFIGNMTR-----TVEVISPAQ 110 (154)
Q Consensus 43 ~~~~l~~~~~d~------~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~ 110 (154)
+|...+.|+.++ ++..||..+..-......... ....+. .-++.+.+.|+.|+ .|..||.++
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a------~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA------VLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE------EECCEEEEECCccCCCccceEEEEcCCC
Confidence 677778887554 466777766543322211111 111111 22677888888776 377788876
Q ss_pred ccceeE--EeCCCcCCcceEEEecCCCccEEEEEcCCCe-----EEEeeC
Q 038702 111 RRSVAT--LQSPYISAIPCRFHAHPHQVGTLAGATGGGQ-----VYVWTS 153 (154)
Q Consensus 111 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-----i~~wd~ 153 (154)
.+-... +....... .++.. ++...+.|+.||. |..||.
T Consensus 501 ~~W~~v~~m~~~rs~~---g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 501 NQWTMVAPMTSPRSAV---GVVVL--GGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred CceeEcccCccccccc---cEEEE--CCEEEEEecccCccccceeEEcCC
Confidence 543322 22121111 12222 5677888888774 555554
No 409
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.03 E-value=2.2 Score=27.60 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=66.2
Q ss_pred CCeEEEEEcCCCCEEEEeeCCC--eEEEEeccccccceeEeecC-CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 33 RAVHSAYFSPSGSSLATTSFDD--TIGIWSGVNFENTAMIHHNN-QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~--~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.....+.|..++.++-+.+.-| .|+.+|+.+++......-.. ..++-+.. . +++...-.=.++...+||..
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~-----~-~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI-----L-GDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE-----E-TTEEEEEESSSSEEEEEETT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE-----E-CCEEEEEEecCCeEEEEccc
Confidence 3556788878888888877766 68889999887654433221 11111211 1 34444444578899999999
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.+.+.++.-.. .. +.++. ++..|+.+.....++++|.
T Consensus 119 tl~~~~~~~y~~-EG--WGLt~---dg~~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 119 TLKKIGTFPYPG-EG--WGLTS---DGKRLIMSDGSSRLYFLDP 156 (264)
T ss_dssp TTEEEEEEE-SS-S----EEEE---CSSCEEEE-SSSEEEEE-T
T ss_pred cceEEEEEecCC-cc--eEEEc---CCCEEEEECCccceEEECC
Confidence 988888876432 22 34453 4566766666778888886
No 410
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.81 E-value=2.3 Score=27.24 Aligned_cols=108 Identities=23% Similarity=0.266 Sum_probs=53.3
Q ss_pred EEcCCCCEEEEeeC-C--CeEEEEeccc---cccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC-eEEEecCCC-
Q 038702 39 YFSPSGSSLATTSF-D--DTIGIWSGVN---FENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR-TVEVISPAQ- 110 (154)
Q Consensus 39 ~~~~~~~~l~~~~~-d--~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~~~~~- 110 (154)
.+-++|+++.+|+. + ..+++++... .............+++-. +..--+||+.++.|+... +..+|..+.
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp--T~~~L~DG~vlIvGG~~~~t~E~~P~~~~ 150 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP--TATTLPDGRVLIVGGSNNPTYEFWPPKGP 150 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc--cceECCCCCEEEEeCcCCCcccccCCccC
Confidence 45668888888775 2 3477777544 111111111112222222 234467999999988775 345554421
Q ss_pred ccceeEE---eC---CCcCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 111 RRSVATL---QS---PYISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 111 ~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
......+ .. ......--.+...| ++++|+.+..+..|.
T Consensus 151 ~~~~~~~~~l~~~~~~~~~nlYP~~~llP-dG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 151 GPGPVTLPFLSQTSDTLPNNLYPFVHLLP-DGNLFIFANRGSIIY 194 (243)
T ss_pred CCCceeeecchhhhccCccccCceEEEcC-CCCEEEEEcCCcEEE
Confidence 1111111 10 01111111244556 888998888765554
No 411
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.71 E-value=2.9 Score=28.20 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=76.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceee-cccCCeE-EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCC----
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVH-SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQ---- 75 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~---- 75 (154)
.+-+.||.+.-..+.............+ ...+++. .-.+...+..++--+.+|.|+--|+............-.
T Consensus 151 ~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e 230 (342)
T PF06433_consen 151 SMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE 230 (342)
T ss_dssp EEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH
T ss_pred EEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc
Confidence 4557788888888875443111111222 2222222 334455566666678899998888876543221111000
Q ss_pred -CCceEe--EEEEEEcCCCcEEEEEc--------cCC--eEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEE-E
Q 038702 76 -TGRWIS--SFRAIWGWDDSCIFIGN--------MTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA-G 141 (154)
Q Consensus 76 -~~~~~~--~~~~~~~~~~~~l~~~~--------~d~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 141 (154)
...+-. --.+++++....|..-- +|+ .|.++|+.+++.+..+...+. . .+++.+.++.-+|. .
T Consensus 231 ~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~--~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 231 KADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-I--DSIAVSQDDKPLLYAL 307 (342)
T ss_dssp HHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-E--SEEEEESSSS-EEEEE
T ss_pred cccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-c--ceEEEccCCCcEEEEE
Confidence 000000 00135555444333321 122 478889999999988874322 2 24555553434554 4
Q ss_pred EcCCCeEEEeeC
Q 038702 142 ATGGGQVYVWTS 153 (154)
Q Consensus 142 ~~~d~~i~~wd~ 153 (154)
...++.+.+||.
T Consensus 308 ~~~~~~l~v~D~ 319 (342)
T PF06433_consen 308 SAGDGTLDVYDA 319 (342)
T ss_dssp ETTTTEEEEEET
T ss_pred cCCCCeEEEEeC
Confidence 557899999996
No 412
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.50 E-value=0.77 Score=32.93 Aligned_cols=35 Identities=29% Similarity=0.186 Sum_probs=26.5
Q ss_pred CCeEEEEEcC----CCCEEEEeeCCCeEEEEeccccccc
Q 038702 33 RAVHSAYFSP----SGSSLATTSFDDTIGIWSGVNFENT 67 (154)
Q Consensus 33 ~~v~~~~~~~----~~~~l~~~~~d~~v~~~~~~~~~~~ 67 (154)
+....+++++ +..++++.+.|+++|+||+.+....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 4456667766 6779999999999999999998873
No 413
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.01 E-value=5.6 Score=30.21 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCeEEEEEcC-CCCEEEEeeCCCeEEEEecccc--ccceeE-eecCCCCc-------eEeEEEEEEcCCCcEEEEEccCC
Q 038702 33 RAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNF--ENTAMI-HHNNQTGR-------WISSFRAIWGWDDSCIFIGNMTR 101 (154)
Q Consensus 33 ~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~--~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~d~ 101 (154)
.+...++|+| +...||.....|...+|++... ...... ......+. .-.-.++.|.++...|+.++. .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence 4677999999 5569999999999999999221 111011 00000010 011125678888777777664 4
Q ss_pred eEEEecCCCccceeEEeCCCcCCcceEEEecCC
Q 038702 102 TVEVISPAQRRSVATLQSPYISAIPCRFHAHPH 134 (154)
Q Consensus 102 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (154)
.+.++|+++......+...........+.-+|.
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 678889887765332222222333356666664
No 414
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=90.90 E-value=0.62 Score=19.01 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=19.0
Q ss_pred EEEEEccCCeEEEecCCCccceeE
Q 038702 93 CIFIGNMTRTVEVISPAQRRSVAT 116 (154)
Q Consensus 93 ~l~~~~~d~~i~i~~~~~~~~~~~ 116 (154)
.++.++.++.+..+|.++++.+-.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577778899999999988876543
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.74 E-value=3.1 Score=26.76 Aligned_cols=108 Identities=23% Similarity=0.265 Sum_probs=59.7
Q ss_pred CeEEEEEcCCCCEEEEee---CCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEec-CC
Q 038702 34 AVHSAYFSPSGSSLATTS---FDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVIS-PA 109 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~---~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~-~~ 109 (154)
.+.+.+++++++.++... ....+.++... ........ +. ......|++++........+...+++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~----g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT----GG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc----CC--ccccccccCCCCEEEEEcCCCceEEEEecC
Confidence 688999999999877765 23345444433 22222111 11 122457899988877777666666663 33
Q ss_pred Cccce-eEEeCCCcCCcceEEEecCCCccEEEEEc---CCCeEEE
Q 038702 110 QRRSV-ATLQSPYISAIPCRFHAHPHQVGTLAGAT---GGGQVYV 150 (154)
Q Consensus 110 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~~ 150 (154)
+++.. ..+...........+.++| ++..++.-. .++.|.+
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYV 140 (253)
T ss_pred CCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEE
Confidence 33322 1222221111336899999 777665444 3455554
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.63 E-value=3.5 Score=27.22 Aligned_cols=116 Identities=9% Similarity=0.018 Sum_probs=64.4
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC-CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN-QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
+....+.++.|+|+.+.|++......-.++=...+......+-.. ...+ .+.+..++++.++--.++.+.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-----~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-----TIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-----HeEEecCCEEEEEehhcceEEEEEE
Confidence 445559999999999988887777666665545555443332111 1111 2345667778887778888888766
Q ss_pred CCccceeEEe-------C-CCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 109 AQRRSVATLQ-------S-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 109 ~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.....+..+. . .+...-.-.++|+|.+ ..|..+-.-.=+.+|
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~ 207 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIF 207 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEE
Confidence 6442221111 1 1111122467899844 444444443333333
No 417
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.33 E-value=0.83 Score=19.57 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=18.8
Q ss_pred cccCCeEEEEEcCCCCEEEEeeC-C--CeEEEE
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSF-D--DTIGIW 59 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~-d--~~v~~~ 59 (154)
.....-....|+|+|+.|+..+. + |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34456678899999998876654 4 444444
No 418
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.29 E-value=0.87 Score=19.70 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=22.8
Q ss_pred CCCcEEEEEc-cCCeEEEecCCCccceeEEeC
Q 038702 89 WDDSCIFIGN-MTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 89 ~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~ 119 (154)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4666665554 577899999988887777764
No 419
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.06 E-value=5.6 Score=28.72 Aligned_cols=31 Identities=6% Similarity=0.208 Sum_probs=25.6
Q ss_pred CCcEEEEEccCCeEEEecCCCccceeEEeCC
Q 038702 90 DDSCIFIGNMTRTVEVISPAQRRSVATLQSP 120 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 120 (154)
.+.+++.+..+|.++.+|.++++.+-..+..
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4456777888999999999999999887643
No 420
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.75 E-value=3.8 Score=26.35 Aligned_cols=115 Identities=9% Similarity=0.020 Sum_probs=59.3
Q ss_pred cccCCeEEEEEcCCCC-EEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 30 SHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
+-...+..++|+|+.+ ++++....+.|..++.. ++......... .+.. . .+++..++.++++.-.++.+.++++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~-E--gI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDY-E--GITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSE-E--EEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCc-e--eEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4455699999999755 66677778888888764 34333332211 1111 1 3456667778887767899998888
Q ss_pred CCcc------ceeEEe--CC--CcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 109 AQRR------SVATLQ--SP--YISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 109 ~~~~------~~~~~~--~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
.... ....+. .. ..... -.++|+|....++ .+....-..+|
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~-EGla~D~~~~~L~-v~kE~~P~~l~ 144 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGF-EGLAYDPKTNRLF-VAKERKPKRLY 144 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS---EEEEEETTTTEEE-EEEESSSEEEE
T ss_pred eccccccchhhceEEecccccCCCcce-EEEEEcCCCCEEE-EEeCCCChhhE
Confidence 4321 112222 11 11222 5789999544444 44444333343
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=89.65 E-value=5.8 Score=28.24 Aligned_cols=98 Identities=7% Similarity=-0.076 Sum_probs=47.3
Q ss_pred CCCEEEEeeCCC---eEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccc--eeEE
Q 038702 43 SGSSLATTSFDD---TIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRS--VATL 117 (154)
Q Consensus 43 ~~~~l~~~~~d~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~ 117 (154)
+++..+.|+.++ .+..||.++..-...... ....... . +...+++..+.|+ .+.+||.++.+- +..+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m--~~~r~~~--~-~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m 433 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST--YYPHYKS--C-ALVFGRRLFLVGR---NAEFYCESSNTWTLIDDP 433 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC--CCccccc--e-EEEECCEEEEECC---ceEEecCCCCcEeEcCCC
Confidence 566667776543 466777665432211111 0110001 1 1123566666664 467788875532 2222
Q ss_pred eCCCcCCcceEEEecCCCccEEEEEcCC-----CeEEEeeC
Q 038702 118 QSPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS 153 (154)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~~wd~ 153 (154)
...... ..++.. ++.+.+.|+.+ ..+..||+
T Consensus 434 ~~~r~~---~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 434 IYPRDN---PELIIV--DNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred CCCccc---cEEEEE--CCEEEEECCcCCCcccceEEEEEC
Confidence 211111 122222 46788888754 35777776
No 422
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.59 E-value=6.2 Score=28.52 Aligned_cols=112 Identities=8% Similarity=-0.025 Sum_probs=56.3
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCe-------EEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecC
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAV-------HSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNN 74 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~ 74 (154)
+.++.++.|.-.|..+++................ ..+.+ .+..++.++.|+.+.-.|.++++..-......
T Consensus 73 yv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~ 150 (527)
T TIGR03075 73 YVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNGD 150 (527)
T ss_pred EEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccccc
Confidence 4456677788788877664111000000000000 01112 23567778889999999998887764332211
Q ss_pred CC-CceEeEEEEEEcCCCcEEEEEc------cCCeEEEecCCCccceeEEe
Q 038702 75 QT-GRWISSFRAIWGWDDSCIFIGN------MTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 75 ~~-~~~~~~~~~~~~~~~~~l~~~~------~d~~i~i~~~~~~~~~~~~~ 118 (154)
.. ...+.. ..... ++ .++.+. .+|.|+-+|.++++.+-.+.
T Consensus 151 ~~~~~~~ts-sP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 151 YKAGYTITA-APLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccC-CcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 10 000000 00001 33 344433 26889999999988765543
No 423
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=89.55 E-value=5.4 Score=27.77 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEecccccc
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN 66 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~ 66 (154)
+++..+++||++++++.-..+|.+.+.+..-.+.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~ 250 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK 250 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccce
Confidence 5799999999999999999999998887544433
No 424
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.42 E-value=0.89 Score=24.08 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=24.6
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEe
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATT 50 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 50 (154)
+..+|.+.-||..+++ ...+..--...+.++++++++.++.+
T Consensus 33 ~~~~GRll~ydp~t~~-----~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKE-----TTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTE-----EEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCe-----EEEehhCCCccCeEEEcCCCCEEEEE
Confidence 3456677777777654 23333444566889999998866554
No 425
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.34 E-value=4.9 Score=27.01 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEe
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWS 60 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~ 60 (154)
..+.|+|.|+|+.|++ ...|.|.+++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 3578999999987765 5699999999
No 426
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.30 E-value=10 Score=30.48 Aligned_cols=138 Identities=12% Similarity=0.071 Sum_probs=67.8
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEE-cC-------CCCEEEEeeCCCeEEEEeccccccc----eeEee
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYF-SP-------SGSSLATTSFDDTIGIWSGVNFENT----AMIHH 72 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~~~~d~~v~~~~~~~~~~~----~~~~~ 72 (154)
+-|+.+.+|+..++.. ....-+....|..+.. -| .=+++..-+.--.|.++-+.-.+.. .....
T Consensus 96 TiDn~L~lWny~~~~e----~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE----LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred EeCCeEEEEEcCCCCc----cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Confidence 4688999999998553 3333344555555553 22 2223333333344555544332221 11111
Q ss_pred --cCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC----CCc---c-c----------------eeEEeCCCcCCcc
Q 038702 73 --NNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP----AQR---R-S----------------VATLQSPYISAIP 126 (154)
Q Consensus 73 --~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~----~~~---~-~----------------~~~~~~~~~~~~~ 126 (154)
-...+. .+.++....+|+.+++|- || .+|.+ ..+ + + +..+.+.+...+
T Consensus 172 ~~i~~dg~--~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI- 245 (1311)
T KOG1900|consen 172 FKISVDGV--SVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPI- 245 (1311)
T ss_pred eeeecCCc--eEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcc-
Confidence 011222 233445566787776655 44 34432 211 0 0 111111112222
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+..+. ..+++.+-+..++|.+||+
T Consensus 246 ~qi~ID~-SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 246 RQITIDN-SRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred eeeEecc-ccceeeeeccCceEEEEEc
Confidence 4566665 4467788889999999997
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.22 E-value=7.8 Score=29.13 Aligned_cols=115 Identities=10% Similarity=0.013 Sum_probs=63.0
Q ss_pred eEEEEEcC--CCCEEEEeeCCCeEEEEeccccc----cc-------------eeEeecCCCCceEeEEEEEEc--CCCcE
Q 038702 35 VHSAYFSP--SGSSLATTSFDDTIGIWSGVNFE----NT-------------AMIHHNNQTGRWISSFRAIWG--WDDSC 93 (154)
Q Consensus 35 v~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~~--~~~~~ 93 (154)
|+.|.... +...|+.+..||.|.+|..++-. .. ....+.. . ...++.++++ ...++
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v--~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-V--GASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-c--CCceeEEEEEecCcceE
Confidence 55555544 44578889999999999764210 00 0000110 1 1134556666 67788
Q ss_pred EEEEccCCeEEEecCCCcc-ceeEEeC-CCcCCcceEEEecCCC--cc---EEEEEcCCCeEEEeeC
Q 038702 94 IFIGNMTRTVEVISPAQRR-SVATLQS-PYISAIPCRFHAHPHQ--VG---TLAGATGGGQVYVWTS 153 (154)
Q Consensus 94 l~~~~~d~~i~i~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~--~~---~l~~~~~d~~i~~wd~ 153 (154)
+|+++....|.||-..... ....... .+...+ -.++|.+.+ +. .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNI-P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNI-PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCC-CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8988888888887544211 1100001 111122 234554422 22 6778888999888875
No 428
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.03 E-value=6.1 Score=27.65 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=32.2
Q ss_pred EEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEE
Q 038702 93 CIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 150 (154)
Q Consensus 93 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~ 150 (154)
.++.++.++++.||.-.+- +-..+..+.++ ...++.-+.....|++-+.+|.+.+
T Consensus 302 ~llV~t~t~~LlVy~d~~L--~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDTTL--VWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSV 356 (418)
T ss_pred EEEEEecCCeEEEEeCCeE--EEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEE
Confidence 4777888888888864322 22222222222 2344433335678888888998865
No 429
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=88.87 E-value=0.41 Score=36.16 Aligned_cols=120 Identities=10% Similarity=-0.042 Sum_probs=64.9
Q ss_pred cccCCeEEEEEcC-CCCEEEEeeCCCeEEEEeccc--cccc--eeEeecCCCCceE-eEEEEEEcCCCcEEEEEccCCeE
Q 038702 30 SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN--FENT--AMIHHNNQTGRWI-SSFRAIWGWDDSCIFIGNMTRTV 103 (154)
Q Consensus 30 ~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~~~~~~--~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i 103 (154)
+..+.+-.++|.. +...+. -.-|.+.+|++.- ++.. .......+.+... .+.-+-+.++..++..+-.++.+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 5567777777743 111221 2345678888754 2211 1111111122111 22223344566788888888888
Q ss_pred EEecCCCccceeEEeCCCcCCcc---------eEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 104 EVISPAQRRSVATLQSPYISAIP---------CRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
++....+... ..+.+|....+. .--..+| ||..|+....||.++.|.+
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeee
Confidence 8876653322 223334333221 1122677 8899999999999999875
No 430
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.83 E-value=6.6 Score=27.85 Aligned_cols=109 Identities=7% Similarity=0.041 Sum_probs=59.8
Q ss_pred eeecCCCcEEEE-EccCCCCCCCCCceeecc-cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 2 ATSSTDGTACIW-DLRSMATDKPEPTKVLSH-KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 2 ~~~~~d~~v~vw-~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
..++.||.|.-| |.+..........+.+.. ..++..+.-..+.+-|++-+.+|++..+-....+..........
T Consensus 284 Lv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~---- 359 (733)
T COG4590 284 LVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQA---- 359 (733)
T ss_pred EEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcC----
Confidence 567788888876 565544322112222222 23444443333455677778888887765443332221111111
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEE
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATL 117 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 117 (154)
.-.+.++|.+.++++- ..|.++++.+++..+.-++
T Consensus 360 --~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 360 --PQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred --cceeeeCcccchheee-cCCceEEEEecCCCCCccH
Confidence 1135689999988764 3568899988766554333
No 431
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.80 E-value=9.6 Score=29.67 Aligned_cols=78 Identities=12% Similarity=-0.096 Sum_probs=44.2
Q ss_pred ccCCeEEEEEcCC--C----CEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEE
Q 038702 31 HKRAVHSAYFSPS--G----SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVE 104 (154)
Q Consensus 31 ~~~~v~~~~~~~~--~----~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 104 (154)
....|.|+.++|- + ++++.|..+..+.+.-..................+-..+-..+-.+..+|.++..||.+.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 3568999999983 2 267888777665554332222221111111111111223345566788999999999876
Q ss_pred EecC
Q 038702 105 VISP 108 (154)
Q Consensus 105 i~~~ 108 (154)
.|-+
T Consensus 609 ~fv~ 612 (1096)
T KOG1897|consen 609 YFVL 612 (1096)
T ss_pred EEEE
Confidence 6643
No 432
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.26 E-value=0.024 Score=39.18 Aligned_cols=106 Identities=10% Similarity=0.126 Sum_probs=65.4
Q ss_pred ccCCeEEEEEcCCCCEEE-EeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 31 HKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 31 ~~~~v~~~~~~~~~~~l~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.++....++|..++..++ .+-..+.+.+||+.+..-...-... .+. ..+ ..|++....++.+...|.+.|++..
T Consensus 73 ~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg-~~s---~sl-l~wsKg~~el~ig~~~gn~viynhg 147 (615)
T KOG2247|consen 73 PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG-TSS---KSL-LAWSKGTPELVIGNNAGNIVIYNHG 147 (615)
T ss_pred CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-cch---HHH-HhhccCCccccccccccceEEEecc
Confidence 345566778888776544 4556788999998764322211111 111 111 4688888889999899999999988
Q ss_pred CccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 110 QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
+.+.+.....|.... ...++.+. ++.+.++.|
T Consensus 148 tsR~iiv~Gkh~RRg--tq~av~lE--d~vil~dcd 179 (615)
T KOG2247|consen 148 TSRRIIVMGKHQRRG--TQIAVTLE--DYVILCDCD 179 (615)
T ss_pred chhhhhhhcccccce--eEEEeccc--ceeeecCcH
Confidence 776554443243333 46777772 345555444
No 433
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.25 E-value=8.3 Score=28.24 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=57.3
Q ss_pred ecCCCcEEEEEccCCCC--CCCCCceeecc--cCC--eEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCC
Q 038702 4 SSTDGTACIWDLRSMAT--DKPEPTKVLSH--KRA--VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTG 77 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~--~~~~~~~~~~~--~~~--v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 77 (154)
--....|.||.+..... .+....+.... .-+ -..+-|+|....|+.-.....-.+++++.........-. ..+
T Consensus 78 VQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G 156 (671)
T PF15390_consen 78 VQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSG 156 (671)
T ss_pred EeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCc
Confidence 34456788999863221 11111111122 112 235679998888877766655556676655444333221 112
Q ss_pred ceEeEEEEEEcCCCcEEEEEc-cCCeEEEecCCCc
Q 038702 78 RWISSFRAIWGWDDSCIFIGN-MTRTVEVISPAQR 111 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~ 111 (154)
.+.+.+|..||+.|+.+- ..=.-++||-.+.
T Consensus 157 ---~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 157 ---LIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ---eEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 345778999998776654 2334678886543
No 434
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.38 E-value=9 Score=27.68 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=22.5
Q ss_pred EcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 87 WGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 87 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
......|++.++..|-||+||.-.-.....++
T Consensus 569 ~tTesGyIa~as~kGDirLyDRig~rAKtalP 600 (776)
T COG5167 569 MTTESGYIAAASRKGDIRLYDRIGKRAKTALP 600 (776)
T ss_pred ccccCceEEEecCCCceeeehhhcchhhhcCc
Confidence 34456799999999999999965443333333
No 435
>PHA03098 kelch-like protein; Provisional
Probab=87.32 E-value=8.9 Score=27.60 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=32.7
Q ss_pred CCCEEEEeeCC-----CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC------CeEEEecCCCc
Q 038702 43 SGSSLATTSFD-----DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT------RTVEVISPAQR 111 (154)
Q Consensus 43 ~~~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~ 111 (154)
++..++.|+.+ ..+..||..+.+-...... +.+.. ...++ ..++...+.|+.+ +.+..||+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l--p~~r~--~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL--IFPRY--NPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc--CcCCc--cceEE-EECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 56677777765 3466777765432211111 11110 01111 2356777777632 35788888754
Q ss_pred c
Q 038702 112 R 112 (154)
Q Consensus 112 ~ 112 (154)
+
T Consensus 417 ~ 417 (534)
T PHA03098 417 K 417 (534)
T ss_pred e
Confidence 3
No 436
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.92 E-value=7.2 Score=26.07 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=76.8
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeec--ccCCeE-EEEEcC--CCCEEEEee-CCCeEEEEecccccccee--Eeec
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLS--HKRAVH-SAYFSP--SGSSLATTS-FDDTIGIWSGVNFENTAM--IHHN 73 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~--~~~~v~-~~~~~~--~~~~l~~~~-~d~~v~~~~~~~~~~~~~--~~~~ 73 (154)
+.+++||+|.=|...-............. ..+.|+ .+++.. .+.+|+.+. ..++|-++|-.-...... +...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 56889999999996433220000111121 123443 455543 356666654 578899998654332110 0000
Q ss_pred ---------C--CCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCC-----Ccc
Q 038702 74 ---------N--QTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH-----QVG 137 (154)
Q Consensus 74 ---------~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 137 (154)
+ ..+..+.+.-..-.++.+.=+.+.--|.|-+||+. ++.++.+.....-..++.++..|. .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 00011111111122333333344455789999874 666666653332233355555442 345
Q ss_pred EEEEEcCCCeEEEeeC
Q 038702 138 TLAGATGGGQVYVWTS 153 (154)
Q Consensus 138 ~l~~~~~d~~i~~wd~ 153 (154)
+|+---.||+|..+|.
T Consensus 263 lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 263 LLVGNFGDGTINAYDP 278 (336)
T ss_pred eEEeecCCceeEEecC
Confidence 6665568999999996
No 437
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.03 E-value=11 Score=27.30 Aligned_cols=60 Identities=8% Similarity=0.007 Sum_probs=35.0
Q ss_pred CCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 44 GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 44 ~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.-+++.++..|-|++||--.......++... ..+. .+..+.+|.++++.+. ..+.+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG---~aIk--~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLG---DAIK--HIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccc---ccee--eeEeecCCcEEEEeec-ceEEEEecc
Confidence 4489999999999999965443333332221 1222 2344567877766553 355555554
No 438
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=85.42 E-value=7.8 Score=25.12 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=39.5
Q ss_pred cEEEEEccCCeEEEecCCCccceeEEeCCCcCCcc-eEEEecCCCccEEEEEcCCCeEEEe
Q 038702 92 SCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIP-CRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 92 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
..|+.|.++|.|.|.|......+..+.-....+.. ..=.+.- -...++.++.||.|++.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~de-vdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDE-VDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeec-cceEEEEEeCCCEEEEE
Confidence 58999999999999999988777777644332221 1111221 13467778899998864
No 439
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=85.29 E-value=2.1 Score=18.34 Aligned_cols=26 Identities=8% Similarity=0.267 Sum_probs=21.5
Q ss_pred EEEEccCCeEEEecCCCccceeEEeC
Q 038702 94 IFIGNMTRTVEVISPAQRRSVATLQS 119 (154)
Q Consensus 94 l~~~~~d~~i~i~~~~~~~~~~~~~~ 119 (154)
++.++.+|.+.-.|.++|+.+-.++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 45568999999999999998877763
No 440
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.19 E-value=8.5 Score=25.35 Aligned_cols=100 Identities=8% Similarity=0.018 Sum_probs=53.7
Q ss_pred CcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEee------CCCeEEEEeccccccceeEeec-CCCCce
Q 038702 8 GTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTS------FDDTIGIWSGVNFENTAMIHHN-NQTGRW 79 (154)
Q Consensus 8 ~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~------~d~~v~~~~~~~~~~~~~~~~~-~~~~~~ 79 (154)
..|.+||....+ -...- +-.+.|+++.|..+.+.+++|. ....+..||..+..-....... ...+..
T Consensus 16 ~~lC~yd~~~~q-----W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQ-----WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCE-----eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc
Confidence 458999987643 12221 4567899999987777777664 3456888888766433222211 112223
Q ss_pred EeEEEEEEcCCCcEEEEEc-c--CCeEEEecCCCcc
Q 038702 80 ISSFRAIWGWDDSCIFIGN-M--TRTVEVISPAQRR 112 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~-~--d~~i~i~~~~~~~ 112 (154)
+..+...-....++.+.|. . +..|..||-.+..
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 3433332222233444443 2 2357777755443
No 441
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=84.87 E-value=18 Score=28.67 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=20.3
Q ss_pred EcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 87 WGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 87 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
..|-..++++| ....+++||+...++++...
T Consensus 941 i~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e 971 (1205)
T KOG1898|consen 941 ICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCE 971 (1205)
T ss_pred EeccCCEEEEe-cccEEEEeeCChHHHHhhhh
Confidence 34544555543 46789999998777665544
No 442
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.55 E-value=4.5 Score=25.37 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=32.5
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEee
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTS 51 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 51 (154)
...+.|.+|++..... .....+.--+.|..+.++..|+++++-=
T Consensus 35 ~~g~~Vev~~l~~~~~---~~~~~F~Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEEC---PLLCTFSTVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred cCCCEEEEEEcccCCC---ceeEEEcchhheeEEEeccccceEEEEE
Confidence 4556799999984332 1344445668999999999999999853
No 443
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=84.48 E-value=1.9 Score=17.11 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=16.7
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEE
Q 038702 35 VHSAYFSPSGSSLATTSFDDTIGIW 59 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~~~d~~v~~~ 59 (154)
...++++++|+.+++=+....|.++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777776666666553
No 444
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=84.43 E-value=2.4 Score=18.30 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=15.6
Q ss_pred CCcEEEEEccCCeEEEecCCC
Q 038702 90 DDSCIFIGNMTRTVEVISPAQ 110 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~ 110 (154)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 456788888999999988753
No 445
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.18 E-value=5.4 Score=30.25 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=30.9
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT 67 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~ 67 (154)
.....++++.-+|.++.++.+..||++++++.......
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs 49 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS 49 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeecccchh
Confidence 34456788888999999999999999999998655443
No 446
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=83.96 E-value=6.2 Score=22.77 Aligned_cols=109 Identities=9% Similarity=0.056 Sum_probs=60.1
Q ss_pred CeeecCCCcEEEEEccCCCCC---CCCCceeecccCCeEEEEEcC-----CCCEEEEeeCCCeEEEEeccccccceeEee
Q 038702 1 MATSSTDGTACIWDLRSMATD---KPEPTKVLSHKRAVHSAYFSP-----SGSSLATTSFDDTIGIWSGVNFENTAMIHH 72 (154)
Q Consensus 1 l~~~~~d~~v~vw~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~ 72 (154)
|+.+..-|+|.|++....... ......+..-...|++|+--+ ....|+.|+.. .+..||+...........
T Consensus 13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~Fyke~ 91 (136)
T PF14781_consen 13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLFYKEV 91 (136)
T ss_pred EEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhhhhhC
Confidence 456777889999987654321 112445556677788876544 34567776554 588999988766543332
Q ss_pred cCCCCceEeEEEEEEcCC-CcEEEEEccCCeEEEecCCCccce
Q 038702 73 NNQTGRWISSFRAIWGWD-DSCIFIGNMTRTVEVISPAQRRSV 114 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~~~~~~~~~ 114 (154)
.. +.....+ -.+... ..+++.| -+..|.-||..-.+..
T Consensus 92 ~D--Gvn~i~~-g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 92 PD--GVNAIVI-GKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF 130 (136)
T ss_pred cc--ceeEEEE-EecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence 22 2111111 123332 3344444 3556777766544433
No 447
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.23 E-value=9.1 Score=24.09 Aligned_cols=58 Identities=7% Similarity=0.066 Sum_probs=34.3
Q ss_pred CEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccC---C---eEEEe
Q 038702 45 SSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMT---R---TVEVI 106 (154)
Q Consensus 45 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~---~i~i~ 106 (154)
..|..+...+.|.+|++............ ..+ .+..+.++..|+|++|-=.+ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~---~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVG---RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chh---heeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 34433366778999999844433322221 111 34467888899999885322 2 56765
No 448
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.81 E-value=12 Score=25.06 Aligned_cols=112 Identities=8% Similarity=0.036 Sum_probs=67.7
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
.-.+.+..++++ +++...+..+.-+++.|+.++..+......+..+ +.-.|.-.|++...+..|.-+-+.|+.
T Consensus 84 ~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g-----yaygv~vsGn~aYVadlddgfLivdvs 156 (370)
T COG5276 84 NARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG-----YAYGVYVSGNYAYVADLDDGFLIVDVS 156 (370)
T ss_pred ehhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc-----eEEEEEecCCEEEEeeccCcEEEEECC
Confidence 344556666664 5666677777779999999998888776555322 233456679999888877777778877
Q ss_pred Cccc---eeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 110 QRRS---VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 110 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+.+. ....... ... ...++.+ +++-..+..|+-+.+-|+
T Consensus 157 dpssP~lagrya~~-~~d-~~~v~IS---Gn~AYvA~~d~GL~ivDV 198 (370)
T COG5276 157 DPSSPQLAGRYALP-GGD-THDVAIS---GNYAYVAWRDGGLTIVDV 198 (370)
T ss_pred CCCCceeeeeeccC-CCC-ceeEEEe---cCeEEEEEeCCCeEEEEc
Confidence 5432 2222211 111 1344443 344444556666666664
No 449
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.66 E-value=14 Score=25.80 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=21.0
Q ss_pred eEEEecCCCccEEEEEcCCCeEEEeeCC
Q 038702 127 CRFHAHPHQVGTLAGATGGGQVYVWTSD 154 (154)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~d~~i~~wd~~ 154 (154)
..+...+ ..+.+.+...+|.|.+|++.
T Consensus 193 ~~v~~d~-~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 193 VQVAVDP-SRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp EEEEEET-TTTEEEEEESSE-EEEEEE-
T ss_pred eeEEecC-CcCEEEEEeCCCcEEEEEEe
Confidence 5677777 44889999999999999973
No 450
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.43 E-value=8.4 Score=23.15 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=21.9
Q ss_pred cceEEEecCC-----CccEEEEEcCCCeEEEeeC
Q 038702 125 IPCRFHAHPH-----QVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 125 ~~~~~~~~~~-----~~~~l~~~~~d~~i~~wd~ 153 (154)
....++|+|. ...+|++.+.++.|.+|..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 3467899983 2347888999999999863
No 451
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=82.11 E-value=11 Score=24.32 Aligned_cols=119 Identities=8% Similarity=0.015 Sum_probs=65.0
Q ss_pred CCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccc---ee---E--eecCCCCceEeEEEEEEcCCCcEEEEEccCCeEE
Q 038702 33 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---AM---I--HHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVE 104 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~---~~---~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 104 (154)
+-.-.|++..++.++++.-.++.+.+.++...... .. + ..........- .++|++.++.|+.+-.....+
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~E--Gla~D~~~~~L~v~kE~~P~~ 142 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFE--GLAYDPKTNRLFVAKERKPKR 142 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--E--EEEEETTTTEEEEEEESSSEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceE--EEEEcCCCCEEEEEeCCCChh
Confidence 45678888777777776666899999888443211 11 1 11111111122 468999888777777776677
Q ss_pred EecCCC---ccceeEEeC------CCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 105 VISPAQ---RRSVATLQS------PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 105 i~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+|.+.. ...+..... .....-...++++|..+.+++.+.....|..+|.
T Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 143 LYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp EEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred hEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC
Confidence 776653 222211110 0011113578899988888888888888888775
No 452
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=80.76 E-value=17 Score=25.46 Aligned_cols=51 Identities=8% Similarity=0.001 Sum_probs=34.8
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP 133 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (154)
...++.||++++++.-..+|.+.+....-.+.+..+.... ...+..+.|+.
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG 269 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCG 269 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-CCCCcEEEEEC
Confidence 3467889999999999999999888765445555554331 22234667765
No 453
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.49 E-value=14 Score=24.55 Aligned_cols=69 Identities=10% Similarity=-0.017 Sum_probs=45.7
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..+.|+|+.+.|++......-.++=..+|+.+.++........ -.+.+.. ++++.++--.++.+.++-+
T Consensus 89 S~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~Dp-E~Ieyig-~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 89 SSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDP-ETIEYIG-GNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCCh-hHeEEec-CCEEEEEehhcceEEEEEE
Confidence 3568999999999888888777777778888888764322111 2345554 4555555556777666543
No 454
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.21 E-value=19 Score=25.77 Aligned_cols=94 Identities=9% Similarity=-0.030 Sum_probs=50.5
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCccceeE
Q 038702 37 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRRSVAT 116 (154)
Q Consensus 37 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 116 (154)
.+=|.. .+..+.+...|-+.-|-................... ..++.|++|.+.++.--.+..|.+++....+....
T Consensus 27 gvFfDD-aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~--I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 27 GVFFDD-ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGE--IKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred ceeecc-CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCc--eeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 344443 333333344455666666554433322221112222 34678999999999999999999998753332222
Q ss_pred E--eCCCcCCcceEEEecC
Q 038702 117 L--QSPYISAIPCRFHAHP 133 (154)
Q Consensus 117 ~--~~~~~~~~~~~~~~~~ 133 (154)
. +..........+.|..
T Consensus 104 ~~~~ck~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTS 122 (657)
T ss_pred HHHHhccCcceeEEEEEec
Confidence 1 1111222235677775
No 455
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=79.65 E-value=3.7 Score=30.25 Aligned_cols=48 Identities=23% Similarity=0.350 Sum_probs=34.1
Q ss_pred EEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCC-eEEEEec
Q 038702 10 ACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDD-TIGIWSG 61 (154)
Q Consensus 10 v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~~~~~ 61 (154)
+.+-|+..... ..++..|..++..++|.+.+..+++++-.| .|.++.+
T Consensus 297 vivkdf~S~a~----i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi 345 (788)
T KOG2109|consen 297 VIVKDFDSFAD----IRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI 345 (788)
T ss_pred EEeecccchhh----hhheeeecCcccccccccCceEEEEEeeccceeeeEEe
Confidence 44445544443 556678999999999999999999988765 3444443
No 456
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=78.86 E-value=9.7 Score=28.85 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=38.1
Q ss_pred eeecCCCcEE-EEEccCCC-CC--CCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEE
Q 038702 2 ATSSTDGTAC-IWDLRSMA-TD--KPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 58 (154)
Q Consensus 2 ~~~~~d~~v~-vw~~~~~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 58 (154)
..|.++|+|. +-.+.... .. ....++++.+..+|..|..++..+.|++|+..+-+++
T Consensus 429 flGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV~qv 489 (737)
T KOG3611|consen 429 FLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGVVQV 489 (737)
T ss_pred EEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcEEEe
Confidence 4577788754 44443321 11 1223445567789999999998889999999986665
No 457
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=77.99 E-value=18 Score=24.21 Aligned_cols=116 Identities=10% Similarity=0.011 Sum_probs=53.6
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc-cccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecC
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN-FENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISP 108 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 108 (154)
.....|..|.|+|++.+.+.+ ..|.++.=+... .+.-.. ............+.++|.+++...++|+....+ ...
T Consensus 184 ~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~--~S~ 259 (302)
T PF14870_consen 184 NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL--VST 259 (302)
T ss_dssp -SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEESTT-EE--EES
T ss_pred CccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCCccEE--EeC
Confidence 346789999999998776654 888888766211 111111 001111112235678999988888877755332 233
Q ss_pred CCccceeEEeC-CCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 109 AQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 109 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
..++.-+.-+. .........+.|.+ ...-++. +.+|.|--|
T Consensus 260 DgGktW~~~~~~~~~~~n~~~i~f~~-~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 260 DGGKTWQKDRVGENVPSNLYRIVFVN-PDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp STTSS-EE-GGGTTSSS---EEEEEE-TTEEEEE--STTEEEEE
T ss_pred CCCccceECccccCCCCceEEEEEcC-CCceEEE-CCCcEEEEe
Confidence 34443333321 11122224566654 2344544 566766544
No 458
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=77.74 E-value=20 Score=24.58 Aligned_cols=108 Identities=11% Similarity=0.037 Sum_probs=51.2
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEecccc-----ccceeEeecCCC-C-ceEeEEEEEEcCCCcEEEEEccC----
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF-----ENTAMIHHNNQT-G-RWISSFRAIWGWDDSCIFIGNMT---- 100 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-----~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~d---- 100 (154)
......+++.+++ .++ +......++.+.... +...+....... . ..-....++|.|+|.+.++-+..
T Consensus 71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 3455788998888 444 444443334454321 111222211111 0 00112246789998866654421
Q ss_pred ---------------CeEEEecCCCccceeEEeCCCcCCcceEEEecCCCccEEEEEcCC
Q 038702 101 ---------------RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 101 ---------------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
+.|.-++...++. ..+.... .....++|+| +++++++-..+
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~--rnp~Gl~~d~-~G~l~~tdn~~ 204 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGF--QNPYGHSVDS-WGDVFFCDNDD 204 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeE-EEEecCc--CCCccceECC-CCCEEEEccCC
Confidence 3344444443332 2222122 2235788988 77777665433
No 459
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=77.35 E-value=1 Score=31.71 Aligned_cols=80 Identities=15% Similarity=0.195 Sum_probs=50.5
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceee-cccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe-ecCCCCceEe
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH-HNNQTGRWIS 81 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (154)
+-..+.+.+||+.+.... ....- .|... -+.|++....++.+...|.+.+++..+.+.....+ |.. +
T Consensus 93 Aek~~piylwd~n~eytq---qLE~gg~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R------R 161 (615)
T KOG2247|consen 93 AEKTGPIYLWDVNSEYTQ---QLESGGTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR------R 161 (615)
T ss_pred hhcCCCeeechhhhhhHH---HHhccCcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhccccc------c
Confidence 445677899999765421 11111 23333 37899988888888899999999988776655544 322 2
Q ss_pred EEEEEEcCCCcEE
Q 038702 82 SFRAIWGWDDSCI 94 (154)
Q Consensus 82 ~~~~~~~~~~~~l 94 (154)
..+.++.+.+..+
T Consensus 162 gtq~av~lEd~vi 174 (615)
T KOG2247|consen 162 GTQIAVTLEDYVI 174 (615)
T ss_pred eeEEEecccceee
Confidence 2345566655443
No 460
>PHA02790 Kelch-like protein; Provisional
Probab=75.05 E-value=28 Score=24.95 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=31.7
Q ss_pred CCCEEEEeeCC--CeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCC---eEEEecCCCc
Q 038702 43 SGSSLATTSFD--DTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTR---TVEVISPAQR 111 (154)
Q Consensus 43 ~~~~l~~~~~d--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~i~~~~~~ 111 (154)
++...+.|+.+ .++..||..+.+-... ... +... .... ...-+++..+.|+.++ .+..||.++.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~-~~l-~~~r--~~~~-~~~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNM-PSL-LKPR--CNPA-VASINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEEC-CCC-CCCC--cccE-EEEECCEEEEecCcCCCCccEEEEeCCCC
Confidence 56666777653 3567777654322111 111 1111 1111 1123677777777553 4677887654
No 461
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=74.05 E-value=27 Score=26.76 Aligned_cols=73 Identities=11% Similarity=0.022 Sum_probs=49.0
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeE----eecC------CCCceE----eEEEEEEcCCCcEEEEE
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMI----HHNN------QTGRWI----SSFRAIWGWDDSCIFIG 97 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~----~~~~------~~~~~~----~~~~~~~~~~~~~l~~~ 97 (154)
...|.++....-+..++..-.||+|.++|-.+.+..... .... ..+-.. ....++|||.+--++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 466778887778889999999999999998876544322 0000 000000 22346899999888888
Q ss_pred ccCCeEE
Q 038702 98 NMTRTVE 104 (154)
Q Consensus 98 ~~d~~i~ 104 (154)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888755
No 462
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=73.03 E-value=26 Score=23.65 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=61.5
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEecccc-----ccceeEeec--CCCCceEeEEEEEEcCC------------CcEEE
Q 038702 35 VHSAYFSPSGSSLATTSFDDTIGIWSGVNF-----ENTAMIHHN--NQTGRWISSFRAIWGWD------------DSCIF 95 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~------------~~~l~ 95 (154)
-+.|+++|.+.+.++....+...+||.... ......... ...........+.|+.. ...++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 468999999988888888999999998721 111111111 00000000112223321 12467
Q ss_pred EEccCCeEEEecCCCccc-----eeEEeCCCcCCcceEEEecCC-CccEEE-EEcCCCeEEEeeC
Q 038702 96 IGNMTRTVEVISPAQRRS-----VATLQSPYISAIPCRFHAHPH-QVGTLA-GATGGGQVYVWTS 153 (154)
Q Consensus 96 ~~~~d~~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~l~-~~~~d~~i~~wd~ 153 (154)
.+++||+|.-|...-... ...+.......+-..+++... .+++|. +--..++|.++|-
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 889999999998642221 222221111222123333321 234444 4446789998874
No 463
>PLN02153 epithiospecifier protein
Probab=72.54 E-value=27 Score=23.59 Aligned_cols=23 Identities=13% Similarity=-0.012 Sum_probs=13.8
Q ss_pred CCCEEEEeeCC-----CeEEEEeccccc
Q 038702 43 SGSSLATTSFD-----DTIGIWSGVNFE 65 (154)
Q Consensus 43 ~~~~l~~~~~d-----~~v~~~~~~~~~ 65 (154)
++..++.|+.+ ..+.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 45566666653 246778876543
No 464
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=72.18 E-value=21 Score=27.83 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=37.1
Q ss_pred cEEEEEccCCCCCCCCCcee-ecccCCeEEEEEcCCCCEEEE-eeCCC-----eEEEEeccccc
Q 038702 9 TACIWDLRSMATDKPEPTKV-LSHKRAVHSAYFSPSGSSLAT-TSFDD-----TIGIWSGVNFE 65 (154)
Q Consensus 9 ~v~vw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~v~~~~~~~~~ 65 (154)
.+.+-|..... ...+ ..+..+|.+-+|||+|+.++. .+..+ .|.+-++.+..
T Consensus 330 ~L~~~D~dG~n-----~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~ 388 (912)
T TIGR02171 330 NLAYIDYTKGA-----SRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASG 388 (912)
T ss_pred eEEEEecCCCC-----ceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccC
Confidence 56666766544 3434 577889999999999999988 44443 47777887643
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=72.09 E-value=17 Score=21.10 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=43.2
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEeccccccc--------eeEeecCCCCceEeEE-EEEEcC--CCcEEEEEccCCeEEE
Q 038702 37 SAYFSPSGSSLATTSFDDTIGIWSGVNFENT--------AMIHHNNQTGRWISSF-RAIWGW--DDSCIFIGNMTRTVEV 105 (154)
Q Consensus 37 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~--~~~~l~~~~~d~~i~i 105 (154)
.-+|......|+.++..++|.+++....... ..+... ..+..+ .-.+.| +...|+.|+ ...+..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin----~~italaaG~l~~~~~~D~LliGt-~t~lla 77 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN----QEITALAAGRLKPDDGRDCLLIGT-QTSLLA 77 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC----CceEEEEEEecCCCCCcCEEEEec-cceEEE
Confidence 4456665667888889999999987654321 222111 122222 223433 345676666 557889
Q ss_pred ecCCCcccee
Q 038702 106 ISPAQRRSVA 115 (154)
Q Consensus 106 ~~~~~~~~~~ 115 (154)
||+.....+.
T Consensus 78 YDV~~N~d~F 87 (136)
T PF14781_consen 78 YDVENNSDLF 87 (136)
T ss_pred EEcccCchhh
Confidence 9998765543
No 466
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=71.09 E-value=13 Score=19.56 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCEEEEee-CCCeEEEEecc
Q 038702 33 RAVHSAYFSPSGSSLATTS-FDDTIGIWSGV 62 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~-~d~~v~~~~~~ 62 (154)
.....|.++|+++.+..++ ..+.|++++..
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4557899999988776665 47889998765
No 467
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=70.89 E-value=28 Score=23.22 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCcceE-----EEecCCCccEEEEEcCCCeEEEee
Q 038702 84 RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCR-----FHAHPHQVGTLAGATGGGQVYVWT 152 (154)
Q Consensus 84 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~d~~i~~wd 152 (154)
++....+|.+|++.-.-..|.+.+.++++.+-.+.+...... . +++-. +.+++-.+..++.|.++|
T Consensus 148 sV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df--~~~~~~f~~QH-dar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 148 SVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDF--TLPATNFSWQH-DARFLNESNDDGTISLFD 218 (299)
T ss_pred eeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcc--cccCCcEeecc-CCEEeccCCCCCEEEEEc
No 468
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=70.86 E-value=31 Score=23.67 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=14.1
Q ss_pred CCeEEEEEcCCCCEEEEe
Q 038702 33 RAVHSAYFSPSGSSLATT 50 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~ 50 (154)
.....|+|.++|+++++-
T Consensus 14 ~~P~~ia~d~~G~l~V~e 31 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAE 31 (367)
T ss_pred CCCceeeECCCCCEEEEe
Confidence 345688999999988775
No 469
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=70.40 E-value=14 Score=22.28 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=24.5
Q ss_pred CeEEEEEcCCC------CEEEEeeCCCeEEEEeccc
Q 038702 34 AVHSAYFSPSG------SSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 34 ~v~~~~~~~~~------~~l~~~~~d~~v~~~~~~~ 63 (154)
.+..++|||.| ..|++.+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999943 3788889999999997654
No 470
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=69.84 E-value=54 Score=26.04 Aligned_cols=98 Identities=7% Similarity=0.062 Sum_probs=62.2
Q ss_pred eecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeE
Q 038702 3 TSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISS 82 (154)
Q Consensus 3 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
.++-..+|++|+..+.+. ...-..|..++..+...-.+..++.|..-+++.+...+..+.........-.+.+...
T Consensus 843 lA~In~~vrLye~t~~~e----Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmta 918 (1096)
T KOG1897|consen 843 LAGINQSVRLYEWTTERE----LRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTA 918 (1096)
T ss_pred EEecCcEEEEEEccccce----ehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceee
Confidence 345567899999987642 3333378888999999889999999998888888777665543333222223333332
Q ss_pred EEEEEcCCCcEEEEEccCCeEEEec
Q 038702 83 FRAIWGWDDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 83 ~~~~~~~~~~~l~~~~~d~~i~i~~ 107 (154)
+..- ++..++.+..+|.+.+-.
T Consensus 919 --veil-~~d~ylgae~~gNlf~v~ 940 (1096)
T KOG1897|consen 919 --VEIL-DDDTYLGAENSGNLFTVR 940 (1096)
T ss_pred --EEEe-cCceEEeecccccEEEEE
Confidence 2222 444555556667666653
No 471
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=68.63 E-value=29 Score=22.51 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=34.5
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcC
Q 038702 37 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGW 89 (154)
Q Consensus 37 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (154)
.+++..+|+++++.-..++|...|..+++....+.-... ++.+++|--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~-----qitsccFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP-----QITSCCFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC-----ceEEEEecC
Confidence 345566888888888899999999999988876654322 233556653
No 472
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=66.30 E-value=68 Score=25.82 Aligned_cols=97 Identities=9% Similarity=0.087 Sum_probs=58.4
Q ss_pred ecCCCcEEEEEccCCCCCCCCCceee-c-ccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEe
Q 038702 4 SSTDGTACIWDLRSMATDKPEPTKVL-S-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWIS 81 (154)
Q Consensus 4 ~~~d~~v~vw~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (154)
++-...+++||+...+. ..+.. . -...|..+++ .+..++.|.....+..+..+...............+++.
T Consensus 950 agvG~~l~~YdlG~K~l----LRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt 1023 (1205)
T KOG1898|consen 950 AGVGRFLRLYDLGKKKL----LRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVT 1023 (1205)
T ss_pred EecccEEEEeeCChHHH----HhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceee
Confidence 44556799999976542 11111 2 2556777777 677888888777777766655444433333344444454
Q ss_pred EEEEEEcCCCcEEEEEccCCeEEEecCC
Q 038702 82 SFRAIWGWDDSCIFIGNMTRTVEVISPA 109 (154)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 109 (154)
++ .--|...++.+..-|++.+-.+.
T Consensus 1024 ~~---~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1024 AL---ELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EE---EEecCCceeeccccCcEEEEECC
Confidence 33 23356677777777777766543
No 473
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=66.29 E-value=46 Score=23.88 Aligned_cols=35 Identities=11% Similarity=-0.061 Sum_probs=26.5
Q ss_pred cccCCeEEEEEcCCCCEEEEeeCCCeEEEEecccc
Q 038702 30 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF 64 (154)
Q Consensus 30 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~ 64 (154)
..-...+.|+|.|+++.|++--..|.|++++..+.
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 34456789999999988777655799999876544
No 474
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.32 E-value=33 Score=21.87 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=48.5
Q ss_pred CCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEE-EEEEcCCCcEEEEEccCCeEEEecCCCccceeEEe--
Q 038702 42 PSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSF-RAIWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ-- 118 (154)
Q Consensus 42 ~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-- 118 (154)
.++..|+.+....++..-|.++........... .+..+..+ .+.|- +|...+--=.+..|...+..+|+.+..+.
T Consensus 138 ~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~-~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS 215 (262)
T COG3823 138 SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTD-DGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLS 215 (262)
T ss_pred cCCcceEeeCCceEEEecCHHHhhhcceEEEEE-CCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEcc
Confidence 366667777777777777776654432222111 11111111 01111 44444433333444444555555443332
Q ss_pred ---------CCCcCCcceEEEecCCCccEEEEEcC
Q 038702 119 ---------SPYISAIPCRFHAHPHQVGTLAGATG 144 (154)
Q Consensus 119 ---------~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (154)
..+..+ ...+++.|..+.++++|-.
T Consensus 216 ~L~~~~~~~~~~~nv-lNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 216 GLLKELNLDKSNDNV-LNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred CCchhcCcccccccc-ccceeecCcCCeEEEecCc
Confidence 112223 3678888866678888753
No 475
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=63.73 E-value=13 Score=16.56 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEe
Q 038702 35 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIH 71 (154)
Q Consensus 35 v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~ 71 (154)
...+.. .|+++..+..++-+.+.|+.++..+....
T Consensus 4 a~~v~v--~g~yaYva~~~~Gl~IvDISnPs~P~~v~ 38 (42)
T PF08309_consen 4 ARDVAV--SGNYAYVADGNNGLVIVDISNPSNPVLVG 38 (42)
T ss_pred EEEEEE--ECCEEEEEeCCCCEEEEECCCCCCCEEEE
Confidence 344554 56777777776778999999887776554
No 476
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=63.55 E-value=72 Score=25.19 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=31.2
Q ss_pred CeEEEEecccccccee-EeecCCCCceEeEEEEEEcCCCcEEEE-EccCC-----eEEEecCCCc
Q 038702 54 DTIGIWSGVNFENTAM-IHHNNQTGRWISSFRAIWGWDDSCIFI-GNMTR-----TVEVISPAQR 111 (154)
Q Consensus 54 ~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~-----~i~i~~~~~~ 111 (154)
+.+.+-|........+ +.... .+++..|+|||+.|+. .+.++ .|++-++.+.
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~------~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTI------SVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred CeEEEEecCCCCceEEEecCCC------ceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 3555555554443332 22221 3556789999999988 44433 4888888753
No 477
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=62.22 E-value=72 Score=24.74 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=29.1
Q ss_pred CeEEEecCCCccceeEEeCCCc-------CCcceEEEecCCCc---cEEEEEcCCCeEEEeeC
Q 038702 101 RTVEVISPAQRRSVATLQSPYI-------SAIPCRFHAHPHQV---GTLAGATGGGQVYVWTS 153 (154)
Q Consensus 101 ~~i~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---~~l~~~~~d~~i~~wd~ 153 (154)
+.|.-.|.++++..-.++..+. .....-+.....++ ..++.++.+|.+++.|.
T Consensus 414 ~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr 476 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDR 476 (764)
T ss_pred ceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEEC
Confidence 4566667778877655543111 01111111211123 27888899999998885
No 478
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=61.95 E-value=42 Score=21.96 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=44.5
Q ss_pred ccCCeEEEEEcC-------CCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeE
Q 038702 31 HKRAVHSAYFSP-------SGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTV 103 (154)
Q Consensus 31 ~~~~v~~~~~~~-------~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 103 (154)
+...|+|++--+ .-..|+.|.++|.|.+.|.+.........-.. ....+.+ ...|..-...++.++.||.|
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lps-vPv~i~~-~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPS-VPVFISV-SGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCC-CceEEEE-EeeeeccceEEEEEeCCCEE
Confidence 456788877633 12479999999999999998776554433221 1111111 12333123456777889988
Q ss_pred EEe
Q 038702 104 EVI 106 (154)
Q Consensus 104 ~i~ 106 (154)
++.
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 753
No 479
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=61.58 E-value=47 Score=22.43 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=62.6
Q ss_pred cCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEE
Q 038702 5 STDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFR 84 (154)
Q Consensus 5 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
.++.=+++.|+.+... +....+..-.+--.++.. .|++...+..|.-+.+.|+.++..+.........+... ..
T Consensus 103 d~ssGL~IvDIS~P~s--P~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~--~~ 176 (370)
T COG5276 103 DWSSGLRIVDISTPDS--PTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT--HD 176 (370)
T ss_pred cCCCceEEEeccCCCC--cceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc--ee
Confidence 3445588999877553 112222233344455555 68888888866667788999988877665433222111 12
Q ss_pred EEEcCCCcEEEEEccCCeEEEecCCCccc
Q 038702 85 AIWGWDDSCIFIGNMTRTVEVISPAQRRS 113 (154)
Q Consensus 85 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~ 113 (154)
++. .|++-..+..|+-+.+-|+.....
T Consensus 177 v~I--SGn~AYvA~~d~GL~ivDVSnp~s 203 (370)
T COG5276 177 VAI--SGNYAYVAWRDGGLTIVDVSNPHS 203 (370)
T ss_pred EEE--ecCeEEEEEeCCCeEEEEccCCCC
Confidence 222 477777888899999999876543
No 480
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=59.90 E-value=21 Score=24.96 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCEEEEeeCCCeEEEEeccc
Q 038702 34 AVHSAYFSPSGSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~ 63 (154)
.|.+++..+..+.+++.+.++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 499999999889999999999999999975
No 481
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=59.44 E-value=51 Score=22.06 Aligned_cols=24 Identities=4% Similarity=-0.242 Sum_probs=14.8
Q ss_pred CCCCEEEEeeCCCe----EEEEeccccc
Q 038702 42 PSGSSLATTSFDDT----IGIWSGVNFE 65 (154)
Q Consensus 42 ~~~~~l~~~~~d~~----v~~~~~~~~~ 65 (154)
.+++..+.|+.++. +..||.++.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCe
Confidence 35667777776542 4577776643
No 482
>PRK13684 Ycf48-like protein; Provisional
Probab=59.35 E-value=53 Score=22.29 Aligned_cols=110 Identities=14% Similarity=0.039 Sum_probs=50.6
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCc
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQR 111 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~ 111 (154)
...+.++.+.|++..++++ ..|.+.. ....... ........... ....+.+.++++.++.+ ..|.+++=....+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg~-tW~~~~~~~~~--~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQT-AWTPHQRNSSR--RLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCCC-eEEEeeCCCcc--cceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence 4567888888887666555 4444432 1111111 11111111111 22345678888877665 4676654333333
Q ss_pred cceeEEeCCC--cCCcceEEEecCCCccEEEEEcCCCeEE
Q 038702 112 RSVATLQSPY--ISAIPCRFHAHPHQVGTLAGATGGGQVY 149 (154)
Q Consensus 112 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 149 (154)
+.-.....+. .......+.+.| ++..++ ++.+|.+.
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~ 283 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLL 283 (334)
T ss_pred CccccccCCccccccceeeEEEcC-CCCEEE-EcCCCeEE
Confidence 3322222110 111124567777 445444 44555543
No 483
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=59.33 E-value=19 Score=17.16 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=15.5
Q ss_pred CeEEEEEcCCCCEEEEeeC
Q 038702 34 AVHSAYFSPSGSSLATTSF 52 (154)
Q Consensus 34 ~v~~~~~~~~~~~l~~~~~ 52 (154)
.+.++..-|+|+.+++|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4678889999999998864
No 484
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=58.59 E-value=54 Score=22.14 Aligned_cols=109 Identities=10% Similarity=-0.011 Sum_probs=57.6
Q ss_pred cCCeEEEEEcCCCCEEEEeeCCCe------EEEEecccc----ccceeE---eecCCCCceE-----eEEEEEEcCCCcE
Q 038702 32 KRAVHSAYFSPSGSSLATTSFDDT------IGIWSGVNF----ENTAMI---HHNNQTGRWI-----SSFRAIWGWDDSC 93 (154)
Q Consensus 32 ~~~v~~~~~~~~~~~l~~~~~d~~------v~~~~~~~~----~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~ 93 (154)
-+.+..|.+.+++..+++.+.++. +...++... ...... .-....+... -.=.+++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456788999976667777777777 555555431 111111 0011111111 0002345667777
Q ss_pred EEEEccC------CeEEEecCCCccceeEEeCC-------------CcCCcceEEEecCCCccEEEEE
Q 038702 94 IFIGNMT------RTVEVISPAQRRSVATLQSP-------------YISAIPCRFHAHPHQVGTLAGA 142 (154)
Q Consensus 94 l~~~~~d------~~i~i~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~ 142 (154)
+++.=.+ ..|+-++.. ++.+..+.-+ ....-.-.++.+| ++..|.+.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~ 164 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAA 164 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEE
Confidence 7776566 678888866 5554444211 1111124688888 66644444
No 485
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=58.36 E-value=51 Score=21.77 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=23.5
Q ss_pred EEcCCCcEEEEEccCCeEEEecCCCccceeEEe
Q 038702 86 IWGWDDSCIFIGNMTRTVEVISPAQRRSVATLQ 118 (154)
Q Consensus 86 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 118 (154)
.-+|+...+++....+-+++||+. ++.++.+.
T Consensus 62 ~t~P~kS~vItt~Kk~Gl~VYDLs-GkqLqs~~ 93 (364)
T COG4247 62 ATNPDKSLVITTVKKAGLRVYDLS-GKQLQSVN 93 (364)
T ss_pred cCCcCcceEEEeeccCCeEEEecC-CCeeeecC
Confidence 346788888888888889999986 44444444
No 486
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=57.60 E-value=2.2 Score=16.28 Aligned_cols=7 Identities=57% Similarity=1.028 Sum_probs=4.3
Q ss_pred EcCCCCE
Q 038702 40 FSPSGSS 46 (154)
Q Consensus 40 ~~~~~~~ 46 (154)
|||+|++
T Consensus 8 FSp~Grl 14 (23)
T PF10584_consen 8 FSPDGRL 14 (23)
T ss_dssp BBTTSSB
T ss_pred ECCCCeE
Confidence 6666654
No 487
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=57.12 E-value=72 Score=23.12 Aligned_cols=102 Identities=9% Similarity=0.018 Sum_probs=53.8
Q ss_pred CCCEEEEeeCCCeEEEE-eccccccceeE--eecCCCCceEeEEEEEEcCC--CcEEEEEccCCeEEEecCCCccceeEE
Q 038702 43 SGSSLATTSFDDTIGIW-SGVNFENTAMI--HHNNQTGRWISSFRAIWGWD--DSCIFIGNMTRTVEVISPAQRRSVATL 117 (154)
Q Consensus 43 ~~~~l~~~~~d~~v~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~~~~~~~~~~~~ 117 (154)
.|..+.....||-|.-| |.+....+... ....-.+..+..+ .|+ .+-+++-...|++..+...+.+.+..-
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l----~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~ 354 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFL----LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE 354 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceee----ccccccceEEEEcCCCceeeeecccCcceehh
Confidence 45667888889988877 45444333211 1111111122211 232 345666677888887766555443222
Q ss_pred eCCCcCCcceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 118 QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
..-. .. ..++++| ...++++- ..|.++++.+
T Consensus 355 ~~~~-~~--~~~~~Sp-~~~~Ll~e-~~gki~~~~l 385 (733)
T COG4590 355 RAYQ-AP--QLVAMSP-NQAYLLSE-DQGKIRLAQL 385 (733)
T ss_pred hhhc-Cc--ceeeeCc-ccchheee-cCCceEEEEe
Confidence 2111 11 3467888 66777654 4467777755
No 488
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=56.31 E-value=17 Score=15.63 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=18.1
Q ss_pred CCeEEEEEcCCCCEEEEeeCCC
Q 038702 33 RAVHSAYFSPSGSSLATTSFDD 54 (154)
Q Consensus 33 ~~v~~~~~~~~~~~l~~~~~d~ 54 (154)
.....|++.++|+..++|..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 3578999999999999887665
No 489
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=56.19 E-value=14 Score=14.70 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=14.2
Q ss_pred CCcEEEEEccCCeEEEec
Q 038702 90 DDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~ 107 (154)
...+++.+.+.+.+|+|.
T Consensus 10 g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 10 GDSWVAVATSAGYLRIFS 27 (27)
T ss_pred cCCEEEEEeCCCeEEecC
Confidence 456888888888999874
No 490
>PLN02193 nitrile-specifier protein
Probab=54.60 E-value=78 Score=22.73 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=15.8
Q ss_pred CCcEEEEEccC----CeEEEecCCCcc
Q 038702 90 DDSCIFIGNMT----RTVEVISPAQRR 112 (154)
Q Consensus 90 ~~~~l~~~~~d----~~i~i~~~~~~~ 112 (154)
+++.++.++.+ ..+.+||+.+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCE
Confidence 56666666654 458899988654
No 491
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=54.32 E-value=21 Score=27.44 Aligned_cols=81 Identities=10% Similarity=0.036 Sum_probs=51.7
Q ss_pred eecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEec
Q 038702 28 VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVIS 107 (154)
Q Consensus 28 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~ 107 (154)
+..|.+.|-=+..+..+..|..-...-.+.++|+++.+...++..- .-+.|-|....++.-+.|+.-.-|+
T Consensus 333 ~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmilnfc---------symqwvp~sdvivaqn~dnl~iwyn 403 (1636)
T KOG3616|consen 333 FINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILNFC---------SYMQWVPGSDVIVAQNGDNLCIWYN 403 (1636)
T ss_pred cccccccccceeccchhhhhhcccccceeEEEEcccchHHHHHHHh---------hhheeccCcceEEecCCCceEEEec
Confidence 3467777777777777777777666777888888876655433211 1246778777777766665444446
Q ss_pred CCCccceeEE
Q 038702 108 PAQRRSVATL 117 (154)
Q Consensus 108 ~~~~~~~~~~ 117 (154)
+..++.+..+
T Consensus 404 ~d~peqvt~~ 413 (1636)
T KOG3616|consen 404 IDAPEQVTMF 413 (1636)
T ss_pred CCcchhheee
Confidence 6655555444
No 492
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=53.94 E-value=82 Score=22.79 Aligned_cols=97 Identities=5% Similarity=-0.120 Sum_probs=47.1
Q ss_pred CCEEEEeeCCC------eEEEEeccccccceeEeecC-CCCceEeEEEEEEcCCCcEEEEEcc------CCeEEEecCCC
Q 038702 44 GSSLATTSFDD------TIGIWSGVNFENTAMIHHNN-QTGRWISSFRAIWGWDDSCIFIGNM------TRTVEVISPAQ 110 (154)
Q Consensus 44 ~~~l~~~~~d~------~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~i~~~~~ 110 (154)
..+++.|+.+. .+..+|+.+.+-........ +....-. .+...+.+.++.|+. .+.+.++|+++
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~H---s~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGH---SATVVGTKLVVFGGIGGTGDSLNDLHIYDLET 199 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccc---eEEEECCEEEEECCccCcccceeeeeeecccc
Confidence 45666677774 68888887765543332211 1111111 112223455556553 34688999987
Q ss_pred ccceeEEeC-C-CcCCcceEEEecCCCccEEEEEcCC
Q 038702 111 RRSVATLQS-P-YISAIPCRFHAHPHQVGTLAGATGG 145 (154)
Q Consensus 111 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~d 145 (154)
.+-...... . ........++.. ...+++.++.+
T Consensus 200 ~~W~~~~~~g~~P~pR~gH~~~~~--~~~~~v~gG~~ 234 (482)
T KOG0379|consen 200 STWSELDTQGEAPSPRYGHAMVVV--GNKLLVFGGGD 234 (482)
T ss_pred ccceecccCCCCCCCCCCceEEEE--CCeEEEEeccc
Confidence 652222111 1 111112233333 34677777766
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=53.63 E-value=45 Score=25.95 Aligned_cols=108 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred EEEcCCCCEEEEeeCCCe-----EEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEEccCCeEEEecCCCcc
Q 038702 38 AYFSPSGSSLATTSFDDT-----IGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIGNMTRTVEVISPAQRR 112 (154)
Q Consensus 38 ~~~~~~~~~l~~~~~d~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~ 112 (154)
+.|-|+|..+++-..||. |+.+.....+....-....... ..+..+|+-....++.+- .+.+++|......
T Consensus 252 LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dE---k~~~~~wn~~s~vlav~~-~n~~~lwttkNyh 327 (1243)
T COG5290 252 LSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDE---KAFLENWNLLSTVLAVAE-GNLLKLWTTKNYH 327 (1243)
T ss_pred cccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchh---hhhhhhhhHHHHHHHHhh-cceEEEEEccceE
Q ss_pred ceeEEeCCCcCCcceEEEecCCCccEEEEEcCCCeEEEe
Q 038702 113 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 151 (154)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w 151 (154)
--......-.... -+.|+|...+.+...+.....++.
T Consensus 328 WYLK~e~~ip~~s--~vkwhpe~~nTl~f~d~~~I~~V~ 364 (1243)
T COG5290 328 WYLKVERQIPGIS--YVKWHPEEKNTLLFRDGERILRVF 364 (1243)
T ss_pred EEEEEeecCCCcc--eeeeccccCcEEEEecCCeEEEEE
No 494
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=52.07 E-value=1.1e+02 Score=24.10 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=38.7
Q ss_pred eeecCCCcEEEEEccCCCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccc
Q 038702 2 ATSSTDGTACIWDLRSMATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 63 (154)
Q Consensus 2 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~ 63 (154)
+-|+.+|.|.++...+..... .......|...|+++....++-+++.++.| .++++..++
T Consensus 639 ~was~gG~V~vi~~tt~~~~~-~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 639 VWASEGGCVHVIPSTTFIRSW-DLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred eeeecCCceEEEechhccccc-hhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEecccc
Confidence 457889999999987754311 122233677789999998777666655544 344444444
No 495
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=50.18 E-value=1.1e+02 Score=23.30 Aligned_cols=61 Identities=11% Similarity=0.045 Sum_probs=35.5
Q ss_pred CCcEEEEEccCCeEEEecCCCccceeEEeCCCcCCc--ceEEEecCCCccEEEEEcCCCeEEEeeC
Q 038702 90 DDSCIFIGNMTRTVEVISPAQRRSVATLQSPYISAI--PCRFHAHPHQVGTLAGATGGGQVYVWTS 153 (154)
Q Consensus 90 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~~wd~ 153 (154)
+|.+..- .+++|.+|++.+.+...++.-+..-.. ...+.+.|...++++.+ .+.+|++.|+
T Consensus 242 ~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs-~~nkIyLld~ 304 (670)
T PF10395_consen 242 FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLS-VNNKIYLLDL 304 (670)
T ss_pred CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEE-cCCEEEEEee
Confidence 4554433 678999999988877777653311000 12234444455555544 4468888875
No 496
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.30 E-value=1.5e+02 Score=24.60 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=13.9
Q ss_pred eCCCeEEEEecccccccee
Q 038702 51 SFDDTIGIWSGVNFENTAM 69 (154)
Q Consensus 51 ~~d~~v~~~~~~~~~~~~~ 69 (154)
+.|+.+.+|+.++......
T Consensus 96 TiDn~L~lWny~~~~e~~~ 114 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAE 114 (1311)
T ss_pred EeCCeEEEEEcCCCCcccc
Confidence 3578899999998554433
No 497
>PLN02193 nitrile-specifier protein
Probab=48.42 E-value=1e+02 Score=22.20 Aligned_cols=67 Identities=9% Similarity=0.092 Sum_probs=32.1
Q ss_pred CCCEEEEeeCC-----CeEEEEeccccccceeEeec-CCCCceEeEEEEEEcCCCcEEEEEccCC-----eEEEecCCCc
Q 038702 43 SGSSLATTSFD-----DTIGIWSGVNFENTAMIHHN-NQTGRWISSFRAIWGWDDSCIFIGNMTR-----TVEVISPAQR 111 (154)
Q Consensus 43 ~~~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~ 111 (154)
++...+.|+.+ ..+..+|+.+.+-....... .+...... . +...++++++.|+.++ .+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h--~-~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH--S-MAADEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce--E-EEEECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 45566666654 35777887764322211110 01111111 1 1223566777776543 4667777654
Q ss_pred c
Q 038702 112 R 112 (154)
Q Consensus 112 ~ 112 (154)
+
T Consensus 305 ~ 305 (470)
T PLN02193 305 K 305 (470)
T ss_pred E
Confidence 3
No 498
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=48.14 E-value=85 Score=21.30 Aligned_cols=75 Identities=9% Similarity=-0.084 Sum_probs=40.2
Q ss_pred eecccCCeEEEEEcC-------CCCEEEEeeCCCeEEEEeccccccceeEee-cCCCCceEeEEEEEEcCCCcEEEEEcc
Q 038702 28 VLSHKRAVHSAYFSP-------SGSSLATTSFDDTIGIWSGVNFENTAMIHH-NNQTGRWISSFRAIWGWDDSCIFIGNM 99 (154)
Q Consensus 28 ~~~~~~~v~~~~~~~-------~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 99 (154)
...+...+..+.|-+ .+.+|++.-..+.|....+........... ..... .+...+++.|||.++++-..
T Consensus 248 ~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 248 AYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFG--GRPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp EETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSS--S-EEEEEEETTSEEEEEE-T
T ss_pred eecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCC--CCceEEEEcCCCeEEEEECC
Confidence 344556677777754 445666665566777777754433221111 11111 13446788899988888777
Q ss_pred CCeEE
Q 038702 100 TRTVE 104 (154)
Q Consensus 100 d~~i~ 104 (154)
+|.|.
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 77653
No 499
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=48.13 E-value=62 Score=23.01 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCEEEEeeCCCeEEEEeccccccceeEeecCCCCceEeEEEEEEcCCCcEEEEE-------ccCCeEEEecCCCcc
Q 038702 44 GSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRWISSFRAIWGWDDSCIFIG-------NMTRTVEVISPAQRR 112 (154)
Q Consensus 44 ~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~d~~i~i~~~~~~~ 112 (154)
++.+...+..+.|-+|+..+.+......... .........+.|.+...+++.. ..++.|++||.++..
T Consensus 235 ~~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~-~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n 309 (465)
T KOG2714|consen 235 GTQLVALSSVGKIGVWHAVTQQAQDVQPISS-YDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRN 309 (465)
T ss_pred hhhhhhccccccccccchhhhceeeeeeccC-ccccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCC
Confidence 4445555667788899988773332222111 0001112234555544444333 345678999988655
No 500
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=47.98 E-value=1.6e+02 Score=24.41 Aligned_cols=136 Identities=10% Similarity=0.077 Sum_probs=0.0
Q ss_pred CcEEEEEccC--------CCCCCCCCceeecccCCeEEEEEcCCCCEEEEeeCCCeEEEEeccccccceeEeecCCCCce
Q 038702 8 GTACIWDLRS--------MATDKPEPTKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTAMIHHNNQTGRW 79 (154)
Q Consensus 8 ~~v~vw~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (154)
|.++++|+-. ......+..-...-+++|..++=. +|.++.+-+ .+|.+|+++......-......
T Consensus 1065 Gr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G~l~~~~G--qKI~v~~l~r~~~ligVaFiD~---- 1137 (1366)
T KOG1896|consen 1065 GRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RGHLLSSQG--QKIIVRKLDRDSELIGVAFIDL---- 1137 (1366)
T ss_pred ccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-ccEEEEccC--cEEEEEEeccCCcceeeEEecc----
Q ss_pred EeEEEEEEcCCCcEEEEEccCCeEEEecCC-CccceeEEeCCCcCCcceEEEecCCCccE-EEEEcCCCeEEEe
Q 038702 80 ISSFRAIWGWDDSCIFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGT-LAGATGGGQVYVW 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~~w 151 (154)
..+......-.++|+.|.--..|.+.... .+..+..+......--+.+..|--+.+++ ++.+..|+.|.+|
T Consensus 1138 -~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1138 -PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred -ceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
Done!