BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038703
         (199 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  109 bits (273), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 5/171 (2%)

Query: 11  NQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFK 70
           + E E +LP G+RF P   E++  YL +K   QRLP  II ++DLY +D P  LP     
Sbjct: 8   DAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFD-PWDLPERALF 66

Query: 71  NCKPDEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGK 129
             +  E YFFT  + +   G +P R   +GYWK TG  + +      +G KK LVFY GK
Sbjct: 67  GAR--EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGK 124

Query: 130 PPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
            P G ++ W+MHE+R+      A A        + ++V C++++KK    K
Sbjct: 125 APRGVKTDWIMHEYRLA-DAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 91/168 (54%), Gaps = 12/168 (7%)

Query: 15  EFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKP 74
           +  LP G+RF P  +E++VQYL +K         +I +IDLY +D P  LP       K 
Sbjct: 17  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFD-PWVLPNKALFGEK- 74

Query: 75  DEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTG 133
            E YFF+  + +   G +P R   SGYWK TG  + I      VG KK LVFY GK P G
Sbjct: 75  -EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 133

Query: 134 TRSRWVMHEFR-VNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
           T++ W+MHE+R + PS  +         T++ ++V C+I+ K+ S  K
Sbjct: 134 TKTNWIMHEYRLIEPSRRNG-------STKLDDWVLCRIYKKQSSAQK 174


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 91/168 (54%), Gaps = 12/168 (7%)

Query: 15  EFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKP 74
           +  LP G+RF P  +E++VQYL +K         +I +IDLY +D P  LP       K 
Sbjct: 14  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFD-PWVLPNKALFGEK- 71

Query: 75  DEGYFFTQLENRDGKG-QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTG 133
            E YFF+  + +   G +P R   SGYWK TG  + I      VG KK LVFY GK P G
Sbjct: 72  -EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG 130

Query: 134 TRSRWVMHEFR-VNPSYLSAFALDITTQTEVVNYVACKIHHKKESGNK 180
           T++ W+MHE+R + PS  +         T++ ++V C+I+ K+ S  K
Sbjct: 131 TKTNWIMHEYRLIEPSRRNG-------STKLDDWVLCRIYKKQSSAQK 171


>pdb|3PJA|A Chain A, Crystal Structure Of Human C3po Complex
 pdb|3PJA|B Chain B, Crystal Structure Of Human C3po Complex
 pdb|3PJA|C Chain C, Crystal Structure Of Human C3po Complex
 pdb|3PJA|D Chain D, Crystal Structure Of Human C3po Complex
 pdb|3PJA|E Chain E, Crystal Structure Of Human C3po Complex
 pdb|3PJA|F Chain F, Crystal Structure Of Human C3po Complex
 pdb|3PJA|G Chain G, Crystal Structure Of Human C3po Complex
 pdb|3PJA|H Chain H, Crystal Structure Of Human C3po Complex
 pdb|3PJA|I Chain I, Crystal Structure Of Human C3po Complex
 pdb|3QB5|A Chain A, Human C3po Complex In The Presence Of Mnso4
 pdb|3QB5|B Chain B, Human C3po Complex In The Presence Of Mnso4
 pdb|3QB5|C Chain C, Human C3po Complex In The Presence Of Mnso4
          Length = 228

 Score = 31.2 bits (69), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 57  AYDHPRQLPIGEFKNCKPDEGYFFTQLENRDGKGQPKRTTKSGYWKDTGKVEQIIWNNSI 116
           A D+ R L I  F N + D G+    L+N        R    G   D  KVE+++++ SI
Sbjct: 161 AGDYSRPLHISTFIN-ELDSGFRLLNLKN-----DSLRKRYDGLKYDVKKVEEVVYDLSI 214

Query: 117 VGFKK 121
            GF K
Sbjct: 215 RGFNK 219


>pdb|1J1J|A Chain A, Crystal Structure Of Human Translin
 pdb|1J1J|B Chain B, Crystal Structure Of Human Translin
 pdb|1J1J|C Chain C, Crystal Structure Of Human Translin
 pdb|1J1J|D Chain D, Crystal Structure Of Human Translin
          Length = 240

 Score = 31.2 bits (69), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 57  AYDHPRQLPIGEFKNCKPDEGYFFTQLENRDGKGQPKRTTKSGYWKDTGKVEQIIWNNSI 116
           A D+ R L I  F N + D G+    L+N        R    G   D  KVE+++++ SI
Sbjct: 173 AGDYSRPLHISTFIN-ELDSGFRLLNLKN-----DSLRKRYDGLKYDVKKVEEVVYDLSI 226

Query: 117 VGFKK 121
            GF K
Sbjct: 227 RGFNK 231


>pdb|1KEY|A Chain A, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
           (Tb-Rbp)
 pdb|1KEY|B Chain B, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
           (Tb-Rbp)
 pdb|1KEY|C Chain C, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
           (Tb-Rbp)
 pdb|1KEY|D Chain D, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
           (Tb-Rbp)
          Length = 235

 Score = 31.2 bits (69), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 57  AYDHPRQLPIGEFKNCKPDEGYFFTQLENRDGKGQPKRTTKSGYWKDTGKVEQIIWNNSI 116
           A D+ R L I  F N + D G+    L+N        R    G   D  KVE+++++ SI
Sbjct: 168 AGDYSRPLHISTFIN-ELDSGFRLLNLKN-----DSLRKRYDGLKYDVKKVEEVVYDLSI 221

Query: 117 VGFKK 121
            GF K
Sbjct: 222 RGFNK 226


>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
 pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
          Length = 669

 Score = 28.9 bits (63), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 98  SGYWKDTGKVEQIIWNNSIVG-FKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALD 156
           + Y+K  G  +       ++  + K+  +Y+G P     S W   E+ +N S    FA D
Sbjct: 391 NAYYKQKGHTDDFYMIGEVLSEYDKVAPYYKGLPALFEFSFWYRLEWGINNSTGCYFAKD 450

Query: 157 ITT-QTEVVNYVACKIHHKKESGNKRSEAGKK 187
           I + Q +  NY +  I   K S +       K
Sbjct: 451 ILSYQQKYANYRSDYIEATKLSNHNEDRTSSK 482


>pdb|4AFK|A Chain A, In Meso Structure Of Alginate Transporter, Alge, From
           Pseudomonas Aeruginosa, Pao1
          Length = 458

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 21/109 (19%)

Query: 90  GQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSY 149
           G+ +    SG W+DT  +E + W+     F+  L+        G   R    E+R +   
Sbjct: 117 GRQRLREDSGQWQDT-NIEALNWS-----FETTLL----NAHAGVAQR--FSEYRTDLDE 164

Query: 150 LS--------AFALDITTQTEVVNYVACKIHHKKESGNKRSEAGKKKNL 190
           L+         F  DI+TQ    + +  +IHH  +SG+ R    +  NL
Sbjct: 165 LAPEDKDRTHVFG-DISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNL 212


>pdb|3RBH|A Chain A, Structure Of Alginate Export Protein Alge From Pseudomonas
           Aeruginosa
 pdb|3RBH|B Chain B, Structure Of Alginate Export Protein Alge From Pseudomonas
           Aeruginosa
 pdb|3RBH|C Chain C, Structure Of Alginate Export Protein Alge From Pseudomonas
           Aeruginosa
 pdb|3RBH|D Chain D, Structure Of Alginate Export Protein Alge From Pseudomonas
           Aeruginosa
          Length = 479

 Score = 28.5 bits (62), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 21/109 (19%)

Query: 90  GQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSY 149
           G+ +    SG W+DT  +E + W+     F+  L+        G   R    E+R +   
Sbjct: 138 GRQRLREDSGQWQDT-NIEALNWS-----FETTLL----NAHAGVAQR--FSEYRTDLDE 185

Query: 150 LS--------AFALDITTQTEVVNYVACKIHHKKESGNKRSEAGKKKNL 190
           L+         F  DI+TQ    + +  +IHH  +SG+ R    +  NL
Sbjct: 186 LAPEDKDRTHVFG-DISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNL 233


>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase
 pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase
 pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase
 pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase
 pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase In Complex With Atp
 pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase In Complex With Atp
 pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase In Complex With Atp
 pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
           Pyrophosphorylase In Complex With Atp
 pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
           Pyrophosphorylase In Complex With Adp-glucose
 pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
           Pyrophosphorylase In Complex With Adp-glucose
 pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
           Pyrophosphorylase In Complex With Adp-glucose
 pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
           Pyrophosphorylase In Complex With Adp-glucose
          Length = 451

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 99  GYWKDTGKVEQIIWNNSIVGFKKILV----FYEGKPPTGTRSRWVMHEFRVNPSYLSAFA 154
           GYW+D G +E   + N+ +G  K  V    FY+   P  T+ R+      + PS +    
Sbjct: 276 GYWEDIGTIEA--FYNANLGITKKPVPDFSFYDRSAPIYTQPRY------LPPSKMLDAD 327

Query: 155 LDITTQTEVVNYVACKIHH 173
           +  +   E      CKIHH
Sbjct: 328 VTDSVIGEGCVIKNCKIHH 346


>pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
          From Hyperthermophilic Thermotoga Maritima R44a Mutant
 pdb|1WL0|B Chain B, Crystal Structure Of Octaprenyl Pyrophosphate Synthase
          From Hyperthermophilic Thermotoga Maritima R44a Mutant
          Length = 299

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 38 KKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKN 71
          ++IL+Q  P  I+KD+ LY      +L I  FKN
Sbjct: 21 EQILSQFFPEQIMKDLPLYGKMLAVRLSILSFKN 54


>pdb|4IGC|X Chain X, X-ray Crystal Structure Of Escherichia Coli Sigma70
           Holoenzyme
 pdb|4IGC|Y Chain Y, X-ray Crystal Structure Of Escherichia Coli Sigma70
           Holoenzyme
          Length = 613

 Score = 27.7 bits (60), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 1   MASQGVFGSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQ----RLPSNIIKDID 54
           +  +G  G +   ++F+   GY+FS      I Q +T+ I +Q    R+P ++I+ I+
Sbjct: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461


>pdb|3IYD|F Chain F, Three-Dimensional Em Structure Of An Intact
           Activator-Dependent Transcription Initiation Complex
          Length = 613

 Score = 27.7 bits (60), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 1   MASQGVFGSINQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQ----RLPSNIIKDID 54
           +  +G  G +   ++F+   GY+FS      I Q +T+ I +Q    R+P ++I+ I+
Sbjct: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN 461


>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
          Dehydrogenase From Lactobacillus Pentosus At 2.3
          Angstrom Resolution
 pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
          Dehydrogenase From Lactobacillus Pentosus At 2.3
          Angstrom Resolution
 pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
          Dehydrogenase From Lactobacillus Pentosus At 2.3
          Angstrom Resolution
 pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
          Dehydrogenase From Lactobacillus Pentosus At 2.3
          Angstrom Resolution
          Length = 318

 Score = 27.7 bits (60), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 22 YRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCK 73
          Y F+   Q I  +++   ++  R   + +   D  A+  P+++  GE+ +CK
Sbjct: 20 YAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCK 71


>pdb|3K8K|A Chain A, Crystal Structure Of Susg
 pdb|3K8K|B Chain B, Crystal Structure Of Susg
 pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
 pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
          Length = 669

 Score = 27.3 bits (59), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 98  SGYWKDTGKVEQIIWNNSIVG-FKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALD 156
           + Y+K  G  +       ++  + K+  +Y+G P     S W   E+ +N S    FA D
Sbjct: 391 NAYYKQKGHTDDFYXIGEVLSEYDKVAPYYKGLPALFEFSFWYRLEWGINNSTGCYFAKD 450

Query: 157 ITT-QTEVVNYVACKIHHKKESGNKRSEAGKK 187
           I + Q +  NY +  I   K S +       K
Sbjct: 451 ILSYQQKYANYRSDYIEATKLSNHDEDRTSSK 482


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,719,391
Number of Sequences: 62578
Number of extensions: 300064
Number of successful extensions: 589
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 18
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)