Query 038703
Match_columns 199
No_of_seqs 118 out of 959
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.8E-57 9.6E-62 361.3 15.6 160 12-176 9-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.8E-56 6.3E-61 356.2 15.0 156 13-178 12-169 (171)
3 1ldd_A APC2WHB, anaphase promo 51.9 9.9 0.00034 25.3 2.5 28 18-46 36-64 (74)
4 1cmb_A Met APO-repressor; DNA- 32.9 74 0.0025 21.8 4.6 37 25-66 50-86 (104)
5 1ym0_B Fibrinotic enzyme compo 30.7 37 0.0013 17.5 2.1 15 7-21 13-27 (27)
6 4dox_A Coat protein; all helix 27.7 34 0.0011 27.6 2.5 27 14-40 151-177 (226)
7 2ojp_A DHDPS, dihydrodipicolin 27.7 20 0.00068 29.5 1.2 33 12-46 97-129 (292)
8 3fkr_A L-2-keto-3-deoxyarabona 25.2 27 0.00093 29.0 1.6 35 11-46 103-139 (309)
9 3cpr_A Dihydrodipicolinate syn 25.0 19 0.00066 29.8 0.6 34 11-46 111-144 (304)
10 3dz1_A Dihydrodipicolinate syn 24.0 22 0.00074 29.7 0.7 23 12-36 103-125 (313)
11 2nuw_A 2-keto-3-deoxygluconate 24.0 29 0.001 28.4 1.6 33 12-46 92-125 (288)
12 2ehh_A DHDPS, dihydrodipicolin 23.9 22 0.00077 29.2 0.8 32 13-46 97-128 (294)
13 1w3i_A EDA, 2-keto-3-deoxy glu 23.5 29 0.00098 28.6 1.4 34 11-46 91-125 (293)
14 1f6k_A N-acetylneuraminate lya 22.5 22 0.00077 29.2 0.6 23 13-36 101-123 (293)
15 3b4u_A Dihydrodipicolinate syn 22.2 31 0.001 28.4 1.3 24 12-36 99-123 (294)
16 3d0c_A Dihydrodipicolinate syn 21.9 31 0.0011 28.7 1.4 32 13-46 108-139 (314)
17 2vc6_A MOSA, dihydrodipicolina 21.7 26 0.0009 28.7 0.8 23 13-36 97-119 (292)
18 2rfg_A Dihydrodipicolinate syn 21.7 27 0.00092 28.8 0.9 24 12-36 96-119 (297)
19 2wkj_A N-acetylneuraminate lya 21.7 24 0.00081 29.2 0.6 23 13-36 108-130 (303)
20 3nr5_A MAF1, repressor of RNA 21.6 23 0.0008 27.1 0.4 12 50-62 119-130 (164)
21 2yxg_A DHDPS, dihydrodipicolin 21.2 25 0.00084 28.9 0.6 32 13-46 97-128 (289)
22 2r91_A 2-keto-3-deoxy-(6-phosp 21.2 33 0.0011 28.0 1.4 34 11-46 90-124 (286)
23 3rhf_A Putative polyphosphate 20.9 9.8 0.00033 31.9 -2.0 46 3-48 85-134 (289)
24 1xky_A Dihydrodipicolinate syn 20.6 29 0.00098 28.7 0.8 33 12-46 108-140 (301)
25 2jv2_A Putative uncharacterize 20.6 57 0.0019 21.9 2.2 29 28-57 26-54 (83)
26 1o5k_A DHDPS, dihydrodipicolin 20.3 27 0.00091 29.0 0.6 32 13-46 109-140 (306)
27 2v9d_A YAGE; dihydrodipicolini 20.2 27 0.00092 29.6 0.6 32 13-46 128-159 (343)
28 3si9_A DHDPS, dihydrodipicolin 20.0 30 0.001 28.9 0.8 33 12-46 118-150 (315)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.8e-57 Score=361.33 Aligned_cols=160 Identities=38% Similarity=0.740 Sum_probs=135.3
Q ss_pred CCCCCCCCCcceECCChHHHHHHHHHHHHhCCCCCCCceeecccCCCCCCCCCCcccccCCCCCeEEEEeeecC--CCCC
Q 038703 12 QEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLEN--RDGK 89 (199)
Q Consensus 12 ~~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~~~~I~~~Dvy~~~~P~~Lp~~~~~~~~~~~wyFF~~~~~--~~g~ 89 (199)
.++++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.++ ||+||. ....++.+||||+++.+ ++|
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~-Pw~Lp~--~~~~g~~ewYFFs~r~~ky~~g- 84 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFD-PWDLPE--RALFGAREWYFFTPRDRKYPNG- 84 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSC-GGGSGG--GCSSCSSEEEEEEECCC------
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCC-chhhhh--hhccCCceEEEEeccccccCCC-
Confidence 466889999999999999999999999999999999999999999999 999994 33445789999999987 788
Q ss_pred CCCcccCCCceeeecCCceEEeeCCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCCcccccccccCCcccccEEEE
Q 038703 90 GQPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVAC 169 (199)
Q Consensus 90 ~r~~R~~~~G~Wk~~g~~k~I~~~g~~iG~kk~l~fy~~~~~~g~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~~VLC 169 (199)
.|++|+|++||||++|++++|..+|.+||+|++|+||.+++|++.+|+|+||||+|.+....... ........++||||
T Consensus 85 ~R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~-~~~~~~~~~~wVlC 163 (174)
T 3ulx_A 85 SRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAG-AKKGSLRLDDWVLC 163 (174)
T ss_dssp CCSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC------------CCSSEEEE
T ss_pred CCceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccc-cccCCCCCCCEEEE
Confidence 89999999999999999999997789999999999999999999999999999999997632110 00123457899999
Q ss_pred EEEEcCC
Q 038703 170 KIHHKKE 176 (199)
Q Consensus 170 rI~~k~~ 176 (199)
|||+|+.
T Consensus 164 rvf~K~~ 170 (174)
T 3ulx_A 164 RLYNKKN 170 (174)
T ss_dssp EEEESCC
T ss_pred EEEEcCC
Confidence 9998764
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.8e-56 Score=356.20 Aligned_cols=156 Identities=38% Similarity=0.719 Sum_probs=131.3
Q ss_pred CCCCCCCCcceECCChHHHHHHHHHHHHhCCCCCCCceeecccCCCCCCCCCCcccccCCCCCeEEEEeeecC--CCCCC
Q 038703 13 EEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPIGEFKNCKPDEGYFFTQLEN--RDGKG 90 (199)
Q Consensus 13 ~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~~~~I~~~Dvy~~~~P~~Lp~~~~~~~~~~~wyFF~~~~~--~~g~~ 90 (199)
..++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+| ||+||. ....++.+||||+++.+ ++| .
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~-Pw~Lp~--~~~~g~~ewyFFs~r~~k~~~g-~ 87 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFD-PWVLPN--KALFGEKEWYFFSPRDRKYPNG-S 87 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSC-GGGHHH--HSSSCSSEEEEEEECCC-------
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCC-hhHhhc--hhhcCCccEEEEeccccccCCC-C
Confidence 45789999999999999999999999999999999999999999999 999994 34456799999999987 788 8
Q ss_pred CCcccCCCceeeecCCceEEeeCCeEEEEEEEEEeeeCCCCCCCccCeEEEEEEeCCCCcccccccccCCcccccEEEEE
Q 038703 91 QPKRTTKSGYWKDTGKVEQIIWNNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRVNPSYLSAFALDITTQTEVVNYVACK 170 (199)
Q Consensus 91 r~~R~~~~G~Wk~~g~~k~I~~~g~~iG~kk~l~fy~~~~~~g~kT~W~M~EY~l~~~~~~~~~~~~~~~~~~~~~VLCr 170 (199)
|++|+|++||||++|++++|..++.+||+|++|+||.+++|.+.+|+|+||||+|...... ......++|||||
T Consensus 88 R~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~------~~~~~~~~~VlCr 161 (171)
T 1ut7_A 88 RPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR------NGSTKLDDWVLCR 161 (171)
T ss_dssp -CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------------CCEEEEE
T ss_pred cccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc------cCcccCCCEEEEE
Confidence 9999999999999999999998889999999999999999999999999999999987511 1234578999999
Q ss_pred EEEcCCCC
Q 038703 171 IHHKKESG 178 (199)
Q Consensus 171 I~~k~~~~ 178 (199)
||+|+...
T Consensus 162 v~~k~~~~ 169 (171)
T 1ut7_A 162 IYKKQSSA 169 (171)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99988653
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=51.87 E-value=9.9 Score=25.28 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.1
Q ss_pred CCCcceECC-ChHHHHHHHHHHHHhCCCCC
Q 038703 18 LPLGYRFSP-NGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 18 lppG~rF~P-TDeELv~~YL~~ki~g~~l~ 46 (199)
.|.|+.|.. |++||-. ||..++...-|.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 367899998 9999987 899999877543
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=32.94 E-value=74 Score=21.84 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=29.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCCCCceeecccCCCCCCCCCCc
Q 038703 25 SPNGQEIIVQYLTKKILNQRLPSNIIKDIDLYAYDHPRQLPI 66 (199)
Q Consensus 25 ~PTDeELv~~YL~~ki~g~~l~~~~I~~~Dvy~~~~P~~Lp~ 66 (199)
+-|..||++.-...-..|+|||. +.|+-... |.++|.
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~-~d~iP~ 86 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKER-SDEIPE 86 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTS-CSCSCH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcC-CccchH
Confidence 45788898887778889999996 46777777 999985
No 5
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=30.71 E-value=37 Score=17.46 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=11.0
Q ss_pred ccccCCCCCCCCCCc
Q 038703 7 FGSINQEEEFDLPLG 21 (199)
Q Consensus 7 ~~~~~~~~~~~lppG 21 (199)
++.-.+.+.+.||||
T Consensus 13 vsqysdagdmelppg 27 (27)
T 1ym0_B 13 VSQYSDAGDMELPPG 27 (27)
T ss_dssp CCSSTTTTCCCCCCC
T ss_pred ceecccccccccCCC
Confidence 344557778999997
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=27.70 E-value=34 Score=27.57 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=18.4
Q ss_pred CCCCCCCcceECCChHHHHHHHHHHHH
Q 038703 14 EEFDLPLGYRFSPNGQEIIVQYLTKKI 40 (199)
Q Consensus 14 ~~~~lppG~rF~PTDeELv~~YL~~ki 40 (199)
+.+.-+-|..+.||++|+|.|=..+++
T Consensus 151 AAl~P~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 151 AAMQPPSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TSCCCTTCCSSCCCHHHHHHHHTC---
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 344445589999999999998554443
No 7
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=27.70 E-value=20 Score=29.48 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=20.8
Q ss_pred CCCCCCCCCcceECCChHHHHHHHHHHHHhCCCCC
Q 038703 12 QEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 12 ~~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~ 46 (199)
-.+.+-+||-| |.||+++|+.|| +.-+..-++|
T Consensus 97 adavlv~~P~y-~~~s~~~l~~~f-~~ia~a~~lP 129 (292)
T 2ojp_A 97 IVGCLTVTPYY-NRPSQEGLYQHF-KAIAEHTDLP 129 (292)
T ss_dssp CSEEEEECCCS-SCCCHHHHHHHH-HHHHTTCSSC
T ss_pred CCEEEECCCCC-CCCCHHHHHHHH-HHHHHhcCCC
Confidence 34455667754 889999999976 3333333444
No 8
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=25.22 E-value=27 Score=29.00 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=22.3
Q ss_pred CCCCCCCCCCcce--ECCChHHHHHHHHHHHHhCCCCC
Q 038703 11 NQEEEFDLPLGYR--FSPNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 11 ~~~~~~~lppG~r--F~PTDeELv~~YL~~ki~g~~l~ 46 (199)
.-.+.+-+||=|- |.||+++|+.|| +.-+..-++|
T Consensus 103 Gadavlv~~Pyy~~~~~~s~~~l~~~f-~~va~a~~lP 139 (309)
T 3fkr_A 103 GAAMVMAMPPYHGATFRVPEAQIFEFY-ARVSDAIAIP 139 (309)
T ss_dssp TCSEEEECCSCBTTTBCCCHHHHHHHH-HHHHHHCSSC
T ss_pred CCCEEEEcCCCCccCCCCCHHHHHHHH-HHHHHhcCCC
Confidence 3344567788332 899999999965 4444444555
No 9
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=25.05 E-value=19 Score=29.85 Aligned_cols=34 Identities=9% Similarity=0.220 Sum_probs=21.6
Q ss_pred CCCCCCCCCCcceECCChHHHHHHHHHHHHhCCCCC
Q 038703 11 NQEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 11 ~~~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~ 46 (199)
.-.+.+-+|| |.|.||+++|+.||- .-+..-++|
T Consensus 111 Gadavlv~~P-~y~~~~~~~l~~~f~-~ia~a~~lP 144 (304)
T 3cpr_A 111 GADGLLVVTP-YYSKPSQEGLLAHFG-AIAAATEVP 144 (304)
T ss_dssp TCSEEEEECC-CSSCCCHHHHHHHHH-HHHHHCCSC
T ss_pred CCCEEEECCC-CCCCCCHHHHHHHHH-HHHHhcCCC
Confidence 3344566777 558899999999763 333333444
No 10
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=24.00 E-value=22 Score=29.66 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=16.4
Q ss_pred CCCCCCCCCcceECCChHHHHHHHH
Q 038703 12 QEEEFDLPLGYRFSPNGQEIIVQYL 36 (199)
Q Consensus 12 ~~~~~~lppG~rF~PTDeELv~~YL 36 (199)
-.+.+-+||- |.||+++|+.||-
T Consensus 103 adavlv~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 103 AAGVMIAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp CSEEEECCCT--TCCSHHHHHHHHH
T ss_pred CCEEEECCCC--CCCCHHHHHHHHH
Confidence 3445667774 5699999999653
No 11
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=23.98 E-value=29 Score=28.41 Aligned_cols=33 Identities=9% Similarity=-0.131 Sum_probs=20.7
Q ss_pred CCCCCCCCCcceEC-CChHHHHHHHHHHHHhCCCCC
Q 038703 12 QEEEFDLPLGYRFS-PNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 12 ~~~~~~lppG~rF~-PTDeELv~~YL~~ki~g~~l~ 46 (199)
-.+.+-+||-| |. ||+++|+.||- .-+..-++|
T Consensus 92 adavlv~~P~y-~~~~s~~~l~~~f~-~va~a~~lP 125 (288)
T 2nuw_A 92 ILGVSSHSPYY-FPRLPEKFLAKYYE-EIARISSHS 125 (288)
T ss_dssp CSEEEECCCCS-SCSCCHHHHHHHHH-HHHHHCCSC
T ss_pred CCEEEEcCCcC-CCCCCHHHHHHHHH-HHHHhcCCC
Confidence 34455667754 78 99999999763 333333444
No 12
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=23.88 E-value=22 Score=29.21 Aligned_cols=32 Identities=6% Similarity=0.081 Sum_probs=20.3
Q ss_pred CCCCCCCCcceECCChHHHHHHHHHHHHhCCCCC
Q 038703 13 EEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 13 ~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~ 46 (199)
.+.+-+||- .|.||+++|+.||- .-+..-++|
T Consensus 97 davlv~~P~-y~~~s~~~l~~~f~-~va~a~~lP 128 (294)
T 2ehh_A 97 DGALVVVPY-YNKPTQRGLYEHFK-TVAQEVDIP 128 (294)
T ss_dssp SEEEEECCC-SSCCCHHHHHHHHH-HHHHHCCSC
T ss_pred CEEEECCCC-CCCCCHHHHHHHHH-HHHHhcCCC
Confidence 345556774 48899999999763 333333444
No 13
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=23.48 E-value=29 Score=28.57 Aligned_cols=34 Identities=6% Similarity=0.026 Sum_probs=21.1
Q ss_pred CCCCCCCCCCcceEC-CChHHHHHHHHHHHHhCCCCC
Q 038703 11 NQEEEFDLPLGYRFS-PNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 11 ~~~~~~~lppG~rF~-PTDeELv~~YL~~ki~g~~l~ 46 (199)
.-.+.+-+||-| |. ||+++|+.||- .-+..-++|
T Consensus 91 Gadavlv~~P~y-~~~~s~~~l~~~f~-~va~a~~lP 125 (293)
T 1w3i_A 91 DIVGIASYAPYY-YPRMSEKHLVKYFK-TLCEVSPHP 125 (293)
T ss_dssp CCSEEEEECCCS-CSSCCHHHHHHHHH-HHHHHCSSC
T ss_pred CCCEEEEcCCCC-CCCCCHHHHHHHHH-HHHhhCCCC
Confidence 334455667754 88 99999999763 333333444
No 14
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=22.51 E-value=22 Score=29.20 Aligned_cols=23 Identities=17% Similarity=-0.019 Sum_probs=17.0
Q ss_pred CCCCCCCCcceECCChHHHHHHHH
Q 038703 13 EEEFDLPLGYRFSPNGQEIIVQYL 36 (199)
Q Consensus 13 ~~~~~lppG~rF~PTDeELv~~YL 36 (199)
.+.+-+||-| |.||+++|+.||-
T Consensus 101 davlv~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 101 DCLSAVTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp SEEEEECCCS-SCCCHHHHHHHHH
T ss_pred CEEEECCCCC-CCCCHHHHHHHHH
Confidence 3455667754 8899999999764
No 15
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=22.24 E-value=31 Score=28.40 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=17.3
Q ss_pred CCCCCCCCCcceEC-CChHHHHHHHH
Q 038703 12 QEEEFDLPLGYRFS-PNGQEIIVQYL 36 (199)
Q Consensus 12 ~~~~~~lppG~rF~-PTDeELv~~YL 36 (199)
-.+.+-+||-| |. ||+++|+.||-
T Consensus 99 adavlv~~P~y-~~~~s~~~l~~~f~ 123 (294)
T 3b4u_A 99 ARNILLAPPSY-FKNVSDDGLFAWFS 123 (294)
T ss_dssp CSEEEECCCCS-SCSCCHHHHHHHHH
T ss_pred CCEEEEcCCcC-CCCCCHHHHHHHHH
Confidence 34455667754 78 99999999763
No 16
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=21.93 E-value=31 Score=28.69 Aligned_cols=32 Identities=9% Similarity=-0.099 Sum_probs=20.8
Q ss_pred CCCCCCCCcceECCChHHHHHHHHHHHHhCCCCC
Q 038703 13 EEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 13 ~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~ 46 (199)
.+.+-+||- .|.||+++|+.|| +.-+..-++|
T Consensus 108 davlv~~P~-y~~~s~~~l~~~f-~~va~a~~lP 139 (314)
T 3d0c_A 108 DCVMIHQPV-HPYITDAGAVEYY-RNIIEALDAP 139 (314)
T ss_dssp SEEEECCCC-CSCCCHHHHHHHH-HHHHHHSSSC
T ss_pred CEEEECCCC-CCCCCHHHHHHHH-HHHHHhCCCC
Confidence 445566775 4889999999976 3334334455
No 17
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=21.71 E-value=26 Score=28.75 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=17.0
Q ss_pred CCCCCCCCcceECCChHHHHHHHH
Q 038703 13 EEEFDLPLGYRFSPNGQEIIVQYL 36 (199)
Q Consensus 13 ~~~~~lppG~rF~PTDeELv~~YL 36 (199)
.+.+-+|| |.|.||+++|+.||-
T Consensus 97 davlv~~P-~y~~~s~~~l~~~f~ 119 (292)
T 2vc6_A 97 DGVLIVSP-YYNKPTQEGIYQHFK 119 (292)
T ss_dssp SEEEEECC-CSSCCCHHHHHHHHH
T ss_pred CEEEEcCC-CCCCCCHHHHHHHHH
Confidence 34556677 458899999999763
No 18
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=21.69 E-value=27 Score=28.82 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=17.4
Q ss_pred CCCCCCCCCcceECCChHHHHHHHH
Q 038703 12 QEEEFDLPLGYRFSPNGQEIIVQYL 36 (199)
Q Consensus 12 ~~~~~~lppG~rF~PTDeELv~~YL 36 (199)
-.+.+-+||-| |.||+++|+.||-
T Consensus 96 adavlv~~P~y-~~~s~~~l~~~f~ 119 (297)
T 2rfg_A 96 ADAVLCVAGYY-NRPSQEGLYQHFK 119 (297)
T ss_dssp CSEEEECCCTT-TCCCHHHHHHHHH
T ss_pred CCEEEEcCCCC-CCCCHHHHHHHHH
Confidence 34455667754 8899999999763
No 19
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=21.68 E-value=24 Score=29.24 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=17.0
Q ss_pred CCCCCCCCcceECCChHHHHHHHH
Q 038703 13 EEEFDLPLGYRFSPNGQEIIVQYL 36 (199)
Q Consensus 13 ~~~~~lppG~rF~PTDeELv~~YL 36 (199)
.+.+-+||-| |.||+++|+.||-
T Consensus 108 davlv~~P~y-~~~s~~~l~~~f~ 130 (303)
T 2wkj_A 108 DAVSAVTPFY-YPFSFEEHCDHYR 130 (303)
T ss_dssp SEEEEECCCS-SCCCHHHHHHHHH
T ss_pred CEEEecCCCC-CCCCHHHHHHHHH
Confidence 3455667754 8899999999763
No 20
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=21.57 E-value=23 Score=27.08 Aligned_cols=12 Identities=33% Similarity=1.046 Sum_probs=10.3
Q ss_pred eeecccCCCCCCC
Q 038703 50 IKDIDLYAYDHPR 62 (199)
Q Consensus 50 I~~~Dvy~~~~P~ 62 (199)
+.++|||.+. |.
T Consensus 119 l~dC~IYsY~-Pd 130 (164)
T 3nr5_A 119 LAECDIYSYN-PD 130 (164)
T ss_dssp GGGCEEEEEC-CC
T ss_pred ccCCeEEEEc-CC
Confidence 5678999999 87
No 21
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=21.24 E-value=25 Score=28.87 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=20.2
Q ss_pred CCCCCCCCcceECCChHHHHHHHHHHHHhCCCCC
Q 038703 13 EEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 13 ~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~ 46 (199)
.+.+-+||- .|.||+++|+.||- .-+..-++|
T Consensus 97 davlv~~P~-y~~~s~~~l~~~f~-~ia~a~~lP 128 (289)
T 2yxg_A 97 DAVLSITPY-YNKPTQEGLRKHFG-KVAESINLP 128 (289)
T ss_dssp SEEEEECCC-SSCCCHHHHHHHHH-HHHHHCSSC
T ss_pred CEEEECCCC-CCCCCHHHHHHHHH-HHHHhcCCC
Confidence 345556774 48899999999763 333333444
No 22
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=21.19 E-value=33 Score=28.00 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=21.2
Q ss_pred CCCCCCCCCCcceEC-CChHHHHHHHHHHHHhCCCCC
Q 038703 11 NQEEEFDLPLGYRFS-PNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 11 ~~~~~~~lppG~rF~-PTDeELv~~YL~~ki~g~~l~ 46 (199)
.-.+.+-+||-| |. ||+++|+.||- .-+..-++|
T Consensus 90 Gadavlv~~P~y-~~~~s~~~l~~~f~-~va~a~~lP 124 (286)
T 2r91_A 90 GAEAVASLPPYY-FPRLSERQIAKYFR-DLCSAVSIP 124 (286)
T ss_dssp TCSEEEECCSCS-STTCCHHHHHHHHH-HHHHHCSSC
T ss_pred CCCEEEEcCCcC-CCCCCHHHHHHHHH-HHHHhcCCC
Confidence 334456677754 78 99999999763 333333444
No 23
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=20.90 E-value=9.8 Score=31.87 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=30.8
Q ss_pred CCCcccccCCCCCCCCCCcceEC----CChHHHHHHHHHHHHhCCCCCCC
Q 038703 3 SQGVFGSINQEEEFDLPLGYRFS----PNGQEIIVQYLTKKILNQRLPSN 48 (199)
Q Consensus 3 ~~~~~~~~~~~~~~~lppG~rF~----PTDeELv~~YL~~ki~g~~l~~~ 48 (199)
++|+.+-|..=-..--|-||+.. ||++|+...||.+.....|-...
T Consensus 85 aAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~~~~ylwR~~~~lP~~G~ 134 (289)
T 3rhf_A 85 TAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEKSHDFLWRIEKQVPAAGM 134 (289)
T ss_dssp TSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHHTSCTTHHHHTTCCCTTC
T ss_pred CCChHHHHHHHHHhcCcCceEEEECCCCChhhhcCCHHHHHHHhCCCCCe
Confidence 34444444422233347788854 99999999999998887765544
No 24
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=20.64 E-value=29 Score=28.73 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=21.4
Q ss_pred CCCCCCCCCcceECCChHHHHHHHHHHHHhCCCCC
Q 038703 12 QEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 12 ~~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~ 46 (199)
-.+.+-+|| |.|.||+++|+.|| +.-+...++|
T Consensus 108 adavlv~~P-~y~~~s~~~l~~~f-~~va~a~~lP 140 (301)
T 1xky_A 108 VDAVMLVAP-YYNKPSQEGMYQHF-KAIAESTPLP 140 (301)
T ss_dssp CSEEEEECC-CSSCCCHHHHHHHH-HHHHHTCSSC
T ss_pred CCEEEEcCC-CCCCCCHHHHHHHH-HHHHHhcCCC
Confidence 344556677 45889999999976 4444444454
No 25
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=20.64 E-value=57 Score=21.87 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCCceeecccCC
Q 038703 28 GQEIIVQYLTKKILNQRLPSNIIKDIDLYA 57 (199)
Q Consensus 28 DeELv~~YL~~ki~g~~l~~~~I~~~Dvy~ 57 (199)
+.++ ..||++++.|+|+...-+..+++++
T Consensus 26 ~~~~-~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 26 PPDF-VDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp CHHH-HHHHHHHHTTSEECTTCEEEEEETT
T ss_pred CccH-HHHHHHHHCCCCccCCCEEEEeeCC
Confidence 3444 4699999999998755444466554
No 26
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=20.25 E-value=27 Score=28.99 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=20.6
Q ss_pred CCCCCCCCcceECCChHHHHHHHHHHHHhCCCCC
Q 038703 13 EEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 13 ~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~ 46 (199)
.+.+-+||-| |.||+++|+.|| +.-+..-++|
T Consensus 109 davlv~~P~y-~~~s~~~l~~~f-~~va~a~~lP 140 (306)
T 1o5k_A 109 NGVLVVTPYY-NKPTQEGLYQHY-KYISERTDLG 140 (306)
T ss_dssp SEEEEECCCS-SCCCHHHHHHHH-HHHHTTCSSC
T ss_pred CEEEECCCCC-CCCCHHHHHHHH-HHHHHhCCCC
Confidence 3455667744 889999999976 3334334444
No 27
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=20.16 E-value=27 Score=29.59 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=20.9
Q ss_pred CCCCCCCCcceECCChHHHHHHHHHHHHhCCCCC
Q 038703 13 EEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 13 ~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~ 46 (199)
.+.+.+||-| |.||+++|+.|| +.-+..-++|
T Consensus 128 davlv~~P~Y-~~~s~~~l~~~f-~~VA~a~~lP 159 (343)
T 2v9d_A 128 DGIVVINPYY-WKVSEANLIRYF-EQVADSVTLP 159 (343)
T ss_dssp SEEEEECCSS-SCCCHHHHHHHH-HHHHHTCSSC
T ss_pred CEEEECCCCC-CCCCHHHHHHHH-HHHHHhcCCC
Confidence 3455667754 889999999976 4444444454
No 28
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=20.02 E-value=30 Score=28.88 Aligned_cols=33 Identities=9% Similarity=0.146 Sum_probs=21.0
Q ss_pred CCCCCCCCCcceECCChHHHHHHHHHHHHhCCCCC
Q 038703 12 QEEEFDLPLGYRFSPNGQEIIVQYLTKKILNQRLP 46 (199)
Q Consensus 12 ~~~~~~lppG~rF~PTDeELv~~YL~~ki~g~~l~ 46 (199)
-.+.+-+||- .|.||+++|+.|| +.-+..-++|
T Consensus 118 adavlv~~P~-y~~~~~~~l~~~f-~~va~a~~lP 150 (315)
T 3si9_A 118 ADAVLVVTPY-YNRPNQRGLYTHF-SSIAKAISIP 150 (315)
T ss_dssp CSEEEEECCC-SSCCCHHHHHHHH-HHHHHHCSSC
T ss_pred CCEEEECCCC-CCCCCHHHHHHHH-HHHHHcCCCC
Confidence 3445666774 4889999999865 4444333444
Done!