BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038704
         (237 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
           Receptor Protein Tyrosine Phosphatase Sigma
          Length = 304

 Score = 31.2 bits (69), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 11/69 (15%)

Query: 156 NPRPVYEVTFLNQ-LPVEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAG 214
           NP P  E+T+    LPV+ + S+G+        ++++ +  L  E +  T + KY  +A 
Sbjct: 135 NPDP--EITWFKDFLPVDPSASNGR--------IKQLRSGALQIESSEETDQGKYECVAT 184

Query: 215 NDGTVSYTS 223
           N   V Y+S
Sbjct: 185 NSAGVRYSS 193


>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
           Receptor Protein Tyrosine Phosphatase Sigma
          Length = 202

 Score = 31.2 bits (69), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 11/69 (15%)

Query: 156 NPRPVYEVTFLNQ-LPVEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAG 214
           NP P  E+T+    LPV+ + S+G+        ++++ +  L  E +  T + KY  +A 
Sbjct: 135 NPDP--EITWFKDFLPVDPSASNGR--------IKQLRSGALQIESSEETDQGKYECVAT 184

Query: 215 NDGTVSYTS 223
           N   V Y+S
Sbjct: 185 NSAGVRYSS 193


>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
           Receptor Protein Tyrosine Phosphatase Sigma
          Length = 214

 Score = 31.2 bits (69), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 14/83 (16%)

Query: 156 NPRPVYEVTFLNQ-LPVEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAG 214
           NP P  E+T+    LPV+ + S+G+        ++++ +  L  E +  T + KY  +A 
Sbjct: 135 NPDP--EITWFKDFLPVDPSASNGR--------IKQLRSGALQIESSEETDQGKYECVAT 184

Query: 215 NDGTVSYTSFVD---QIKKVVST 234
           N   V Y+S  +   ++++V  T
Sbjct: 185 NSAGVRYSSPANLYVRVRRVAGT 207


>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
           Chicken Receptor Protein Tyrosine Phosphatase Sigma
          Length = 210

 Score = 31.2 bits (69), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 11/69 (15%)

Query: 156 NPRPVYEVTFLNQ-LPVEATCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKYRVLAG 214
           NP P  E+T+    LPV+ + S+G+        ++++ +  L  E +  T + KY  +A 
Sbjct: 135 NPDP--EITWFKDFLPVDPSTSNGR--------IKQLRSGGLQIESSEETDQGKYECVAS 184

Query: 215 NDGTVSYTS 223
           N   V Y+S
Sbjct: 185 NSAGVRYSS 193


>pdb|2HRO|A Chain A, Structure Of The Full-Lenght Enzyme I Of The Pts System
           From Staphylococcus Carnosus
          Length = 573

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 183 DVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTVSYTSFVDQIKKVVSTFI 236
           D+ +  +R+LA  LG E  N +  D+  V+ GND T S T+ ++  K+ V  F+
Sbjct: 130 DIRDVSKRVLAHILGVELPNPSIVDESVVIIGNDLTPSDTAQLN--KEYVQGFV 181


>pdb|2WQD|A Chain A, Crystal Structure Of Enzyme I Of The
           Phosphoenolpyruvate:sugar Phosphotransferase System In
           The Dephosphorylated State
          Length = 572

 Score = 27.7 bits (60), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query: 183 DVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTVSYTSFVDQ 227
           D+ +  +R+L+  LG E  N +  D+  V+ GND T S T+ +++
Sbjct: 131 DIRDVSKRVLSHILGVELPNPSMIDESVVIVGNDLTPSDTAQLNK 175


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,901,923
Number of Sequences: 62578
Number of extensions: 216902
Number of successful extensions: 665
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 6
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)