RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 038704
(237 letters)
>gnl|CDD|178115 PLN02499, PLN02499, glycerol-3-phosphate acyltransferase.
Length = 498
Score = 515 bits (1328), Expect = 0.0
Identities = 221/235 (94%), Positives = 229/235 (97%)
Query: 1 MWAIPYMSRIFGGKIIVKGKPPPPVSGSSTGVLFVCTHRTLMDPVVLSTVLRRKIPAVTY 60
MWAIPY+SRIFGGK+IVKGKPPPP SG ++GVLFVCTHRTLMDPVVLSTVL R IPAVTY
Sbjct: 259 MWAIPYVSRIFGGKVIVKGKPPPPASGGNSGVLFVCTHRTLMDPVVLSTVLGRSIPAVTY 318
Query: 61 SISRLSEILSPIPTVRLTRIRDVDAEKIKRELSNGDLVVCPEGTTCREPFLLRFSALFAE 120
SISRLSEILSPIPTVRLTRIRDVDAEKIKREL+ GDLVVCPEGTTCREPFLLRFSALFAE
Sbjct: 319 SISRLSEILSPIPTVRLTRIRDVDAEKIKRELARGDLVVCPEGTTCREPFLLRFSALFAE 378
Query: 121 LTDRIVPVAMNYRVGFFHATTARGWKGLDPMFFFMNPRPVYEVTFLNQLPVEATCSSGKS 180
LTDRIVPVAMNYRVGFFHATTARGWKGLDP+FFFMNPRPVYEVTFLNQLPVEATCSSGKS
Sbjct: 379 LTDRIVPVAMNYRVGFFHATTARGWKGLDPIFFFMNPRPVYEVTFLNQLPVEATCSSGKS 438
Query: 181 PHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTVSYTSFVDQIKKVVSTF 235
PHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTVSY SF+DQ+KKVVSTF
Sbjct: 439 PHDVANYVQRILAATLGFECTNFTRKDKYRVLAGNDGTVSYLSFLDQLKKVVSTF 493
>gnl|CDD|215118 PLN02177, PLN02177, glycerol-3-phosphate acyltransferase.
Length = 497
Score = 327 bits (840), Expect = e-111
Identities = 144/214 (67%), Positives = 165/214 (77%)
Query: 6 YMSRIFGGKIIVKGKPPPPVSGSSTGVLFVCTHRTLMDPVVLSTVLRRKIPAVTYSISRL 65
Y ++ G ++IVKG PPPP GVLFVC HRT++DPVV + L RKI VTYSIS+
Sbjct: 277 YNYKLLGIRLIVKGNPPPPPKKGQPGVLFVCNHRTVLDPVVTAVALGRKISCVTYSISKF 336
Query: 66 SEILSPIPTVRLTRIRDVDAEKIKRELSNGDLVVCPEGTTCREPFLLRFSALFAELTDRI 125
SE++SPI V L+R R+ DA IKR L GDLV+CPEGTTCREPFLLRFSALFAELTDRI
Sbjct: 337 SELISPIKAVALSREREKDAANIKRLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRI 396
Query: 126 VPVAMNYRVGFFHATTARGWKGLDPMFFFMNPRPVYEVTFLNQLPVEATCSSGKSPHDVA 185
VPVA+N + FH TT RG+K LDP F FMNPRP YE+TFLNQLP E TC GKSP +VA
Sbjct: 397 VPVAINTKQSMFHGTTVRGYKLLDPYFVFMNPRPTYEITFLNQLPKELTCKGGKSPIEVA 456
Query: 186 NYVQRILAATLGFECTNFTRKDKYRVLAGNDGTV 219
NY+QR+LA TLGFECTN TRKDKY +LAG DG V
Sbjct: 457 NYIQRVLAGTLGFECTNLTRKDKYAILAGTDGRV 490
>gnl|CDD|215320 PLN02588, PLN02588, glycerol-3-phosphate acyltransferase.
Length = 525
Score = 236 bits (602), Expect = 4e-75
Identities = 115/197 (58%), Positives = 142/197 (72%), Gaps = 10/197 (5%)
Query: 31 GVLFVCTHRTLMDPVVLSTVLRRK-IPAVTYSISRLSEILSPIPTVRLTRIRDVDAEKIK 89
G LFVC HRTL+DP+ +S LR+K I AVTYS+SRLSE+L+PI TVRLTR R D + ++
Sbjct: 328 GCLFVCNHRTLLDPLYISYALRKKNIKAVTYSLSRLSELLAPIKTVRLTRDRVKDGQAME 387
Query: 90 RELSNGDLVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGLD 149
+ LS GDLVVCPEGTTCREP+LLRFS LF+E+ D IVPVA++ V FF+ TTA G K D
Sbjct: 388 KLLSQGDLVVCPEGTTCREPYLLRFSPLFSEVCDVIVPVAIDSHVTFFYGTTASGLKAFD 447
Query: 150 PMFFFMNPRPVYEVTFLNQLPVEATCSS-------GKSPHDVANYVQRILAATLGFECTN 202
P+FF +NP P Y V L+ PV + SS GK +VAN+VQ + LGFECTN
Sbjct: 448 PIFFLLNPFPSYTVQLLD--PVSGSSSSTCQDPDNGKLKFEVANHVQHEIGNALGFECTN 505
Query: 203 FTRKDKYRVLAGNDGTV 219
TR+DKY +LAGN+G V
Sbjct: 506 LTRRDKYLILAGNNGVV 522
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 86.3 bits (214), Expect = 6e-21
Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 35/204 (17%)
Query: 6 YMSRIFGGKIIVKGKPPPPVSGSSTGVLFVCTHRTLMDPVVLSTVLRRKIP-AVTYSISR 64
Y+ F G + ++ K PPP G VLFV H + D ++L +L R + V +
Sbjct: 3 YLLLNFFGFVRLEVKGPPPPPGGG-PVLFVSNHSSWWDGLILFLLLERGLRRDVYGLMDE 61
Query: 65 LS----EILSPIPTVRLTRIRDVDAEK----IKRELSNGD--LVVCPEGTTCREP-FLLR 113
+ + + R A K + R LS + + PEGT R L+
Sbjct: 62 ELLERYPFFTRLGAFSVDRDSPRSAAKSLKYVARLLSKPGSVVWIFPEGTRTRRDKRPLQ 121
Query: 114 FSALFAELTDR----IVPVAMNYRVGFFHATTARGWKGLDPMFFFMNPRPVYEVTFLNQL 169
F A L ++ IVPVA+ Y F +F + P Y
Sbjct: 122 FKPGVAHLAEKAGVPIVPVALRYTFELFEQF--------PEIFVRIGPPIPYAE------ 167
Query: 170 PVEATCSSGKSPHDVANYVQRILA 193
T + ++AN + R+L
Sbjct: 168 ----TALGEELAAELANRLTRLLD 187
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 73.4 bits (181), Expect = 5e-16
Identities = 62/216 (28%), Positives = 94/216 (43%), Gaps = 21/216 (9%)
Query: 7 MSRIFG-GKIIVKGKPPPPVSGSSTGVLFVCTHRTLMDPVVLS-----TVLRRKIPAVTY 60
+ FG I V GKP PP + V H + +DP++L +++ +K
Sbjct: 4 LLFAFGFYVIKVHGKPDPP----EAPRIIVANHTSFIDPLILFSDLFPSIVAKKELGKLP 59
Query: 61 SISRLSEILSPIPTVRL-TRIRDVDAEKIKRELSNGD---LVVCPEGTTCREPFLLRFSA 116
I + L I R + R E+IK ++ + +++ PEGTT L+ F
Sbjct: 60 FIGTILRALGCIFVDRSEPKDRKKVVEEIKERATDPNWPPILIFPEGTTTNGKALIMFK- 118
Query: 117 LFAELTDRIV-PVAMNYRVGFFHAT-TARGWKGLDPMFFFM-NPRPVYEVTFLNQLPVEA 173
A V PVA+ Y F A + G+ L +F + P V EV FL PV
Sbjct: 119 KGAFEPGVPVQPVAIRYPNKFVDAFWNSSGYSSLMYLFRLLTQPANVLEVEFL---PVYT 175
Query: 174 TCSSGKSPHDVANYVQRILAATLGFECTNFTRKDKY 209
G+ P + AN V+ I+A LG T++T +DK
Sbjct: 176 PSEEGEDPKEFANRVRLIMANKLGLPATDWTGEDKR 211
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 70.8 bits (174), Expect = 3e-15
Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 28/194 (14%)
Query: 9 RIFGGKIIVKGKPPPPVSGSSTGVLFVCTHRTLMDPVVLSTVLRRKIPAVTYS------- 61
R+ G ++ V+G P G V+ V H++ +DP+VL L R I V
Sbjct: 6 RLLGVRVRVEGLENLPPKG---PVIIVANHQSYLDPLVLGAALPRPIRFVAKKELFKIPF 62
Query: 62 ISRLSEILSPIPTVRLTRIRDVDA-EKIKRELSNGD-LVVCPEGTTCREPFLLRF---SA 116
+ L +L IP R +A + L G+ +V+ PEGT R+ LL F +
Sbjct: 63 LGWLLRLLGAIPIDRGNGRSAREALREAIEALKEGESVVIFPEGTRSRDGELLPFKSGAF 122
Query: 117 LFAELTD-RIVPVAMNYRVGFFHATTARGWKGLDPMFFFMNPRPVYEVTFLNQLPVEATC 175
A+ IVPVA++ W L P V V +P E
Sbjct: 123 RLAKEAGVPIVPVAISG-----------TWGSLPKGKKLPRPGRV-TVRIGEPIPPEGLE 170
Query: 176 SSGKSPHDVANYVQ 189
+ + ++ V+
Sbjct: 171 LAEEDRKELREKVR 184
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 62.8 bits (153), Expect = 9e-13
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 32 VLFVCTHRTLMDPVVLSTVLRRKIPAVTYSISR-------LSEILSPIPTVRLTRIRDVD 84
L V H++ +DP+VLS +L RK+ V + + L +L + + + R
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGRK 60
Query: 85 AEKIKREL-----SNGDLVVCPEGTTCREPFLLRF---SALFAELTD-RIVPVAMNY 132
A RE L++ PEGT R LL F +A A IVPVA+
Sbjct: 61 ARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAIRG 117
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 52.3 bits (126), Expect = 2e-08
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 31/152 (20%)
Query: 9 RIFGGKIIVKGKPPPPVSGSSTGVLFVCTHR-TLMDPVVLSTVLRRKIPAVTYS------ 61
RI+ +I V G+ P G V+F+ H L+DP++L+ LRR + + +
Sbjct: 10 RIYFRRITVVGRENVPKDG---PVIFLGNHPNALIDPLLLAATLRRPVRFLAKADLFKNP 66
Query: 62 -ISRLSEILSPIPTVRLTRIRDVDAEKIKRE---------LSNGD-LVVCPEGTTCREPF 110
I L E IP R + KI L G + + PEG + P
Sbjct: 67 LIGWLLESFGAIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGAIGIFPEGGSHDRPR 126
Query: 111 LLRFSALFAEL---------TD-RIVPVAMNY 132
LL A A + D +IVPV +NY
Sbjct: 127 LLPLKAGAARMALEALEAGQKDVKIVPVGLNY 158
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 49.6 bits (119), Expect = 6e-08
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 14 KIIVKGKPPPPVSGSSTGVLFVCTHRTLMDPVVLSTVLRRKIPAVTYSISR-------LS 66
++ V G P G + V H++ +DP++LS +L ++ + + L
Sbjct: 1 RVRVHGLENLPRGG---PAIVVANHQSYLDPLLLSLLLPKRGRPLVFVAKDELLNLPLLG 57
Query: 67 EILSPIPTVRLTRIRDVDA----EKIKRELSNGDLV-VCPEGTTCREPFLLRFSA----L 117
++ + + + R DA E + L G+LV + PEGT R LL F L
Sbjct: 58 WLMRLLGCIFIDRKNAKDAANTLEYLVELLREGELVLIFPEGTRSRGGELLPFKKGAFRL 117
Query: 118 FAELTDRIVPVAM 130
E IVPVA+
Sbjct: 118 AREAGVPIVPVAI 130
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 43.4 bits (102), Expect = 4e-05
Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 21/181 (11%)
Query: 1 MWAIPYMSRIFGGKIIVKGKPPPPVSGSSTGVLFVCTHRTLMDPVVLSTVLRRKIPA--V 58
+ + + +FG ++ V+G P L V H++ +DP++LS L R+ P V
Sbjct: 38 RFLVLLLLLLFGLRVEVEGLENLP---KGGPALVVANHQSFLDPLLLSLALPRRGPVRFV 94
Query: 59 TYS-------ISRLSEILSPIPTVRLTRIRDVDAEKIKRELSNGD-LVVCPEGTT----- 105
+ L +L IP R + + R + G LV+ PEGT
Sbjct: 95 AKKELFKVPLLGWLLRLLGAIPVDRENPDDETLRAAVARLKAGGRSLVIFPEGTRSRGGE 154
Query: 106 CREPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGLDPMFFFMNPRPVYEVTF 165
PF + L E IVPVA+ F + +
Sbjct: 155 ELLPFKRGAARLALEAGVPIVPVAIVGAEELF---PSLKKGKVKVRIGPPIDISALPEPL 211
Query: 166 L 166
L
Sbjct: 212 L 212
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 32.2 bits (74), Expect = 0.28
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 19/128 (14%)
Query: 14 KIIVKGKPPPPVSGSSTGVLFVCTHRTLMDPVVLSTVLRRKIPAVTYS-------ISRLS 66
++ V+G+ P G G L + H + +D +L R I V +
Sbjct: 428 RLRVEGRENIPAKG---GALLLGNHVSWIDWALLQAASPRPIRFVMERSIYEKWYLKWFF 484
Query: 67 EILSPIPTVRLTRIRDVDAEKIKRELSNGDLVVC--PEGTTCREPFLLRFSALF---AEL 121
++ IP + ++ E I++ L +G+ VVC PEG R L F F +
Sbjct: 485 KLFGVIP-ISSGGSKES-LEFIRKALDDGE-VVCIFPEGAITRNGQLNEFKRGFELIVKG 541
Query: 122 TD-RIVPV 128
TD I+P
Sbjct: 542 TDVPIIPF 549
>gnl|CDD|237190 PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase;
Provisional.
Length = 353
Score = 30.6 bits (70), Expect = 0.70
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 113 RFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGL--DP 150
R AL EL+DR++ V M RV F T GWKGL DP
Sbjct: 76 RLKALADELSDRLLIV-M--RVYFEKPRTTVGWKGLINDP 112
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 29.8 bits (68), Expect = 0.96
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 33 LFVCTHRTLMDPVVLSTVLRRKIP 56
L + H++ +D +VL V R+IP
Sbjct: 90 LVISNHQSWVDILVLQYVFNRRIP 113
>gnl|CDD|192395 pfam09821, ABC_transp, ABC nitrate/sulfonate/bicarbonate family
transporter, ATPase subunit. Members of this family are
found in various prokaryotic ABC transporters,
predominantly involved in nitrate, sulfonate and
bicarbonate translocation.
Length = 120
Score = 28.7 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 91 ELSNGDLVVCPEGTTCREPFLLRFSALFAELTDRIVPVA 129
EL GD+ + P G E + LFAE VP+A
Sbjct: 28 ELEGGDIELTPLGRRFAEADIDERKELFAEQLLAHVPLA 66
>gnl|CDD|227096 COG4754, COG4754, Uncharacterized conserved protein [Function
unknown].
Length = 157
Score = 28.9 bits (65), Expect = 1.3
Identities = 13/67 (19%), Positives = 25/67 (37%)
Query: 91 ELSNGDLVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGLDP 150
+GD+++ EG E + LF + I P A + R+ A +
Sbjct: 59 TAESGDIILTDEGKEYVESPIRERKELFRQKLKNIEPFATHLRLRLDDIEEAMEVLFEEE 118
Query: 151 MFFFMNP 157
+ + +P
Sbjct: 119 LETYNSP 125
>gnl|CDD|128752 smart00476, DNaseIc, deoxyribonuclease I. Deoxyribonuclease I
catalyzes the endonucleolytic cleavage of
double-stranded DNA. The enzyme is secreted outside the
cell and also involved in apoptosis in the nucleus.
Length = 276
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 96 DLVVCPEGTTCREPFLLRFSALFAELTD-RIVP 127
D C REPF+++FS+ + + IVP
Sbjct: 116 DGCECGNDVFSREPFVVKFSSPSTAVKEFVIVP 148
>gnl|CDD|132722 cd02735, RNAP_I_Rpa1_C, Largest subunit (Rpa1) of Eukaryotic RNA
polymerase I (RNAP I), C-terminal domain. RNA
polymerase I (RNAP I) is a multi-subunit protein
complex responsible for the synthesis of rRNA
precursor. It consists of at least 14 different
subunits, and the largest one is homologous to subunit
Rpb1 of yeast RNAP II and subunit beta' of bacterial
RNAP. Rpa1 is also known as Rpa190 in yeast. Structure
studies suggest that different RNAP complexes share a
similar crab-claw-shape structure. The C-terminal
domain of Rpb1, the largest subunit of RNAP II, makes
up part of the foot and jaw structures of RNAP II. The
similarity between this domain and the C-terminal
domain of Rpb1, its counterpart in RNAP II, suggests a
similar functional and structural role.
Length = 309
Score = 29.5 bits (67), Expect = 1.5
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 58 VTYSISRLSEIL--------SPIPTVRL-TRIRDVDAEKIKRELSN 94
VT I RL EIL +P T+ L AE +K+ LS
Sbjct: 43 VTLGIPRLREILMTASKNIKTPSMTLPLKNGKSAERAETLKKRLSR 88
>gnl|CDD|147835 pfam05899, Cupin_3, Protein of unknown function (DUF861). This
family consists of several proteins which seem to be
specific to plants and bacteria. The function of this
family is unknown.
Length = 74
Score = 27.6 bits (62), Expect = 1.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 90 RELSNGDLVVCPEGTTCREPFL 111
EL GDLVV P G T L
Sbjct: 46 VELRAGDLVVFPAGFTGTWEVL 67
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 28.4 bits (64), Expect = 2.5
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 31/117 (26%)
Query: 10 IFGGKIIVKGKPPPPVSGSSTGVLFVCTHRTLMDPVVLSTVLRR---------------K 54
+ G K++V G P L + HR+ +D +VL + R K
Sbjct: 7 LSGVKVVVYGDEPKLPKER---ALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLK 63
Query: 55 IPAVTYSISRLSEILSPIPTVRLTRIRDVDAEKIKRELSN-------GDLVVCPEGT 104
P + +L E + L R + D + IKR+L L++ PEGT
Sbjct: 64 YPPLGGWGWQLGEF------IFLKRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGT 114
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 28.1 bits (63), Expect = 2.5
Identities = 34/133 (25%), Positives = 50/133 (37%), Gaps = 20/133 (15%)
Query: 12 GGKIIVKGKPPPPVSGSSTGVLFVCTHRTLMDPVVLSTVLRRKIPAVT----YSISRLSE 67
G K+ V G P VL V H++ +DP+ LS I + I
Sbjct: 1 GLKVEVVGPENLPAKS---PVLVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWIPFFGI 57
Query: 68 ILSPIPTVRLTR--IRDVDA--EKIKRELSNGDLV-VCPEGTTCREPFLLRF------SA 116
+L + + R IR + + L G + V PEGT R +L F A
Sbjct: 58 MLWLTGAIFIDRENIRAIATALKAAIEVLKQGRSIGVFPEGTRSRGRDILPFKKGAFHIA 117
Query: 117 LFAELTDRIVPVA 129
+ A + I+PV
Sbjct: 118 IKAGV--PILPVV 128
>gnl|CDD|213521 TIGR00281, TIGR00281, segregation and condensation protein B.
Shown to be required for chromosome segregation and
condensation in B. subtilis [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 186
Score = 28.3 bits (63), Expect = 2.9
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 70 SPIPTVRLTRIRDVDAEKIKRELSNGDLVVCPEGTTCRE--PFLLRFSALFAEL 121
PI R+ IR V + +I +L L V G F+ + F +
Sbjct: 100 QPITRARINEIRGVKSYQIVDDLVEKGL-VVELGRKDTPGRSFIYETTPKFYDY 152
>gnl|CDD|233753 TIGR02162, torC, trimethylamine-N-oxide reductase c-type cytochrome
TorC. This family includes consists of TorC, a
pentahemic c-type cytochrome subunit of periplasmic
reductases for trimethylamine-N-oxide (TMAO). The
N-terminal half is closely related to tetrahemic NapC
(or NirT) subunits of periplasmic nitrate (or nitrite)
reductases; some species have both TMAO and nitrate
reductase complexes.
Length = 386
Score = 28.7 bits (64), Expect = 3.2
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 158 RPVYE-----VTFLNQLPVEATCSSGKSPHDVANYVQRILAAT 195
+ VYE V + N V A C+ PHD R L A+
Sbjct: 54 QNVYEEYKQTVHWQNTSGVRAECADCHVPHDGTAKYARKLQAS 96
>gnl|CDD|235386 PRK05279, PRK05279, N-acetylglutamate synthase; Validated.
Length = 441
Score = 28.6 bits (65), Expect = 3.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 79 RIRDVDAEKIKRELSNGDLV 98
+R +DAE I+R+L +G +V
Sbjct: 152 EVRRIDAEAIRRQLDSGAIV 171
>gnl|CDD|239770 cd04237, AAK_NAGS-ABP, AAK_NAGS-ABP: N-acetylglutamate (NAG)
kinase-like domain of the NAG Synthase (NAGS) of the
arginine-biosynthesis pathway (ABP) found in gamma- and
beta-proteobacteria and higher plant chloroplasts.
Domain architecture of these NAGS consisted of an
N-terminal NAG kinase-like (ArgB) domain (this CD) and a
C-terminal NAG synthase, acetyltransferase (ArgA)
domain. Both bacterial and plant sequences in this CD
have a conserved N-terminal extension; a similar
sequence in the NAG kinases of the cyclic
arginine-biosynthesis pathway has been implicated in
feedback inhibition sensing. Plant sequences also have
an N-terminal chloroplast transit peptide and an insert
(approx. 70 residues) in the C-terminal region of ArgB.
Members of this CD belong to the Amino Acid Kinase
Superfamily (AAK).
Length = 280
Score = 28.3 bits (64), Expect = 3.6
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 79 RIRDVDAEKIKRELSNGDLVVCP 101
+R +DA+ I+R+L G +V+
Sbjct: 145 EVRRIDADAIRRQLDQGSIVLLS 167
>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase
Superfamily (AAK), AK-DapG-like; this CD includes the
N-terminal catalytic aspartokinase (AK) domain of the
diaminopimelate-sensitive aspartokinase isoenzyme AKI
(DapG), a monofunctional enzymes found in Bacilli
(Bacillus subtilis 168), Clostridia, and Actinobacteria
bacterial species, as well as, the catalytic AK domain
of the lysine-sensitive aspartokinase isoenzyme AKII of
Bacillus subtilis 168, the lysine plus
threonine-sensitive aspartokinase of Corynebacterium
glutamicum, and related isoenzymes. In Bacillus
subtilis, the regulation of the diaminopimelate-lysine
biosynthetic pathway involves dual control by
diaminopimelate and lysine, effected through separate
diaminopimelate- and lysine-sensitive aspartokinase
isoenzymes. The role of the AKI isoenzyme is most likely
to provide a constant level of aspartyl-beta-phosphate
for the biosynthesis of diaminopimelate for
peptidoglycan synthesis and dipicolinate during
sporulation. The B. subtilis 168 AKII is induced by
methionine, and repressed and inhibited by lysine. In
Corynebacterium glutamicum and other various
Gram-positive bacteria, the DAP-lysine pathway is
feedback regulated by the concerted action of lysine and
threonine. Also included in this CD are the
aspartokinases of the extreme thermophile, Thermus
thermophilus HB27, the Gram-negative obligate
methylotroph, Methylophilus methylotrophus AS1, and
those single aspartokinase isoenzyme types found in
Pseudomonas, C. glutamicum, and Amycolatopsis
lactamdurans. The B. subtilis AKI is tetrameric
consisting of two alpha and two beta subunits; the alpha
(43 kD) and beta (17 kD) subunit formed by two in-phase
overlapping genes. The alpha subunit contains the AK
catalytic domain and two ACT domains. The beta subunit
contains two ACT domains. The B. subtilis 168 AKII
aspartokinase is also described as tetrameric consisting
of two alpha and two beta subunits. Some archeal
aspartokinases in this group lack recognizable ACT
domains.
Length = 239
Score = 27.8 bits (63), Expect = 4.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 79 RIRDVDAEKIKRELSNGDLVV 99
RI D+D ++I L GD+VV
Sbjct: 110 RIIDIDPKRILEALEEGDVVV 130
>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed.
Length = 403
Score = 27.9 bits (63), Expect = 5.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 79 RIRDVDAEKIKRELSNGDLVV 99
+I +V+ ++I L GD+VV
Sbjct: 117 KIIEVNPDRILEALEEGDVVV 137
>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed.
Length = 404
Score = 27.8 bits (63), Expect = 6.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 79 RIRDVDAEKIKRELSNGDLVV 99
RI D+D +I+ L GD+VV
Sbjct: 112 RITDIDPSRIREALDEGDVVV 132
>gnl|CDD|223794 COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP)
synthase [Amino acid transport and metabolism].
Length = 351
Score = 27.6 bits (62), Expect = 6.9
Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 113 RFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGL--DP 150
R AL EL DR+ V M RV F T GWKGL DP
Sbjct: 75 RLKALREELKDRLEIV-M--RVYFEKPRTTVGWKGLINDP 111
>gnl|CDD|233620 TIGR01890, N-Ac-Glu-synth, amino-acid N-acetyltransferase. This
model represents a clade of amino-acid
N-acetyltransferases acting mainly on glutamate in the
first step of the "acetylated" ornithine biosynthesis
pathway. For this reason it is also called
N-acetylglutamate synthase. The enzyme may also act on
aspartate [Amino acid biosynthesis, Glutamate family].
Length = 429
Score = 27.5 bits (61), Expect = 6.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 79 RIRDVDAEKIKRELSNGDLVVCP 101
IR +D E I+R+L G +V+
Sbjct: 144 VIRKIDTEGIRRQLDAGSIVLLS 166
>gnl|CDD|222139 pfam13449, Phytase-like, Esterase-like activity of phytase. This
is a repeated domain that carries several highly
conserved Glu and Asp residues indicating the likelihood
that the domain incorporates the enzymic activity of the
PLC-like phospho-diesterase part of the proteins.
Length = 324
Score = 27.3 bits (61), Expect = 7.1
Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 69 LSPIPTVRLTRI-------RDVDAEKIKRELSNGDLVVCPEG--TTCREPFLLRFSALFA 119
++ L R D E I G L + EG + PFL RF
Sbjct: 64 VTITDVTPLLDPDGQPFPKRSFDPEGI-ALDPGGTLWISSEGDRSRGIPPFLRRFDLDGR 122
Query: 120 ELTDRIVPVAMNYRVGFFHATTARGWKGL 148
L + +P A G G++GL
Sbjct: 123 LLRELPLPAAFLPGPGKQGVRNNLGFEGL 151
>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase
Superfamily (AAK), AKii; this CD includes the N-terminal
catalytic aspartokinase (AK) domain of the
lysine-sensitive aspartokinase isoenzyme AKII of
Bacillus subtilis 168, and the lysine plus
threonine-sensitive aspartokinase of Corynebacterium
glutamicum, and related sequences. In B. subtilis 168,
the regulation of the diaminopimelate (Dap)-lysine
biosynthetic pathway involves dual control by Dap and
lysine, effected through separate Dap- and
lysine-sensitive aspartokinase isoenzymes. The B.
subtilis 168 AKII is induced by methionine, and
repressed and inhibited by lysine. Although
Corynebacterium glutamicum is known to contain a single
aspartokinase isoenzyme type, both the succinylase and
dehydrogenase variant pathways of DAP-lysine synthesis
operate simultaneously in this organism. In this
organism and other various Gram-positive bacteria, the
DAP-lysine pathway is feedback regulated by the
concerted action of lysine and theronine. Also included
in this CD are the aspartokinases of the extreme
thermophile, Thermus thermophilus HB27, the
Gram-negative obligate methylotroph, Methylophilus
methylotrophus AS1, and those single aspartokinases
found in Pseudomons, C. glutamicum, and Amycolatopsis
lactamdurans. B. subtilis 168 AKII, and the C.
glutamicum, Streptomyces clavuligerus and A.
lactamdurans aspartokinases are described as tetramers
consisting of two alpha and two beta subunits; the alpha
(44 kD) and beta (18 kD) subunits formed by two in-phase
overlapping polypeptides.
Length = 239
Score = 26.7 bits (60), Expect = 8.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 79 RIRDVDAEKIKRELSNGDLVV 99
RI D+D ++I+ L GD+V+
Sbjct: 110 RIIDIDPDRIRELLEEGDVVI 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.424
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,541,266
Number of extensions: 1197766
Number of successful extensions: 1431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1418
Number of HSP's successfully gapped: 42
Length of query: 237
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 143
Effective length of database: 6,768,326
Effective search space: 967870618
Effective search space used: 967870618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)