RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 038704
(237 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 7e-04
Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 51/147 (34%)
Query: 108 EPFLLRFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGLDPMFFFMNPRPVYEVTFLN 167
+ + +EL + + +GL+ + + NP + +L
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFT------------QGLNILEWLENPSNTPDKDYLL 232
Query: 168 QLPV-------------EATC-SSGKSPHDVANY-------VQRILAATLGFECTNFTRK 206
+P+ T G +P ++ +Y Q ++ A
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV----------- 281
Query: 207 DKYRVLAGNDGTVSYTSFVDQIKKVVS 233
+A D S+ SF ++K ++
Sbjct: 282 ----AIAETD---SWESFFVSVRKAIT 301
Score = 36.6 bits (84), Expect = 0.007
Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 36/161 (22%)
Query: 6 YMSRIF----GGKIIVKGKPPPPVSGSSTGVLFVCTHRTLMD-----PVVLST------V 50
Y + IF GK+ + K ++ ST F L P +
Sbjct: 1688 YSAMIFETIVDGKLKTE-KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 51 LRRK--IPAVT---------YS-ISRLSEILSPIPTVRLTRIR----DVDAEKIKRELSN 94
L+ K IPA Y+ ++ L++++S V + R V + + SN
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 95 GDLV-VCPE--GTTCREPFLLRFSALFAELTDRIVPVAMNY 132
++ + P + + L + T +V + NY
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-NY 1846
Score = 29.2 bits (65), Expect = 1.5
Identities = 34/199 (17%), Positives = 64/199 (32%), Gaps = 64/199 (32%)
Query: 44 PVVLS------TVLRRKIPAVTYSI-SRLSEILS---PIPTVRLTRIRDVDAEKIKRELS 93
P+ LS +L +P ++ I S+L E + P PT D E +
Sbjct: 8 PLTLSHGSLEHVLL---VPTASFFIASQLQEQFNKILPEPTEGFAA----DDE----PTT 56
Query: 94 NGDLVVCPEGTTCREPFLLRFSALFAE-----LTDRIVPVAMNYRVGFFHATTARGWKGL 148
+LV + FL + + E D+++ + + F
Sbjct: 57 PAELVG-------K--FL-GYVSSLVEPSKVGQFDQVLNLCLTE----FENC-------- 94
Query: 149 DPMFFFMNPRPVYEVTFLNQLPVEATCSSGKSPHDVANYVQ-RILAATLGFECTNFTRKD 207
++ ++ +L E + K+ + NY+ RI+A F +K
Sbjct: 95 -----YLEGNDIH--ALAAKLLQENDTTLVKTKELIKNYITARIMAK------RPFDKKS 141
Query: 208 KYRVL-AGNDGTVS-YTSF 224
+ A +G F
Sbjct: 142 NSALFRAVGEGNAQLVAIF 160
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.050
Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 18/97 (18%)
Query: 51 LRRKIPAVTYSISRLSEILSPIPTVRLTR--IRDVDAEKIKRELSNGDLVVCPEGTTCRE 108
L +KI + + + IL+ + ++ + I D D + E +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLVNAI----------L 549
Query: 109 PFLLRFSA--LFAELTDRIVPVAMNYRVGFFHATTAR 143
FL + + ++ TD ++ +A+ +
Sbjct: 550 DFLPKIEENLICSKYTD-LLRIALMAEDEAIFEEAHK 585
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB:
3u44_A*
Length = 1232
Score = 31.5 bits (71), Expect = 0.28
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 85 AEKIKRELSNGDLVVCPEGTTCREP------FLLR----FSALFAELTDRIVPVAMNYRV 134
A++I++ +S+ V + T R LLR + EL + +PV N
Sbjct: 556 AKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTS 615
Query: 135 GFFHATTAR 143
G+F A
Sbjct: 616 GYFEAVEVA 624
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative
initiati amino-acid biosynthesis, ATP-binding; HET: LYS;
2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Length = 421
Score = 31.0 bits (71), Expect = 0.32
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 79 RIRDVDAEKIKRELSNGDLVV 99
RI DV +++ L G + +
Sbjct: 112 RIVDVTPGRVREALDEGKICI 132
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET:
LYS; 2.54A {Synechocystis}
Length = 600
Score = 31.0 bits (71), Expect = 0.38
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 79 RIRDVDAEKIKRELSNGDLVV 99
RI ++ ++++ L G +VV
Sbjct: 112 RILEIRPDRLEHHLREGKVVV 132
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 28.1 bits (63), Expect = 2.8
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 118 FAELTDRIVPVAMNYRV---GFFHAT 140
A++ ++ V+MNYRV GF
Sbjct: 138 LAQVEGAVL-VSMNYRVGTFGFLALP 162
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 28.2 bits (63), Expect = 3.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 125 IVPVAMNYRVGFF 137
+V V++NYR G F
Sbjct: 157 VVFVSINYRTGPF 169
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 28.1 bits (63), Expect = 3.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 115 SALFAELTDRIVPVAMNYRVGFF 137
+ + D IV V NYRVG
Sbjct: 124 TQVIQASDDVIVFVTFNYRVGAL 146
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 27.8 bits (62), Expect = 3.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 125 IVPVAMNYRVGFF 137
I+ VA+NYRV +
Sbjct: 149 IIHVAVNYRVASW 161
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 27.9 bits (61), Expect = 3.2
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 88 IKRELSNGDLVVCPEGTTCREPFLLRFS 115
I +E L GT FLLRFS
Sbjct: 582 ISKERERALLKDQQPGT-----FLLRFS 604
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 27.9 bits (61), Expect = 3.3
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 88 IKRELSNGDLVVCPEGTTCREPFLLRFS 115
I +E L P GT FLLRFS
Sbjct: 463 ISKERERAILSTKPPGT-----FLLRFS 485
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 27.3 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 118 FAELTDRIVPVAMNYRV---GFFHAT 140
A + IV V+MNYRV GF
Sbjct: 133 LARVERVIV-VSMNYRVGALGFLALP 157
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 27.1 bits (60), Expect = 5.4
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 118 FAELTDRIVPVAMNYRVGFF 137
A + + IV + YRVG F
Sbjct: 167 MAAVGNVIV-ASFQYRVGAF 185
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 27.1 bits (59), Expect = 5.6
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 88 IKRELSNGDLVVCPEGTTCREPFLLRFS 115
I +E L GT FLLRFS
Sbjct: 447 ISKERERALLKDQQPGT-----FLLRFS 469
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A
{Francisella tularensis}
Length = 346
Score = 26.8 bits (60), Expect = 6.9
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 113 RFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGL--DP 150
+ + I+ + M RV F T GWKG DP
Sbjct: 72 KLKEQVKKFHKDILII-M--RVYFEKPRTTIGWKGFINDP 108
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET:
PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A
1kfl_A* 1qr7_A*
Length = 350
Score = 26.4 bits (59), Expect = 8.0
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 113 RFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGL--DP 150
R AL EL D + V M RV F T GWKGL DP
Sbjct: 75 RLLALREELKDELEIV-M--RVYFEKPRTTVGWKGLINDP 111
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited;
beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP
G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB:
1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A
1ofq_A 1ofr_A* 1og0_A*
Length = 370
Score = 26.5 bits (59), Expect = 8.5
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 113 RFSALFAELTDRIVPVAMNYRVGFFHATTARGWKGL--DP 150
R L EL + + M R T GWKGL DP
Sbjct: 90 RLKKLSDELKGDLSII-M--RAYLEKPRTTVGWKGLINDP 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.424
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,808,693
Number of extensions: 228655
Number of successful extensions: 759
Number of sequences better than 10.0: 1
Number of HSP's gapped: 756
Number of HSP's successfully gapped: 28
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.7 bits)