RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 038704
         (237 letters)



>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 72

 Score = 27.3 bits (61), Expect = 0.42
 Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 51 LRRKIPAVTYSISRLSEILSPIPTVRLTRIRDVDAEKIKR 90
          +R+++      I  + +IL+P    RL  +R    + +++
Sbjct: 1  MRQQLEMQKKQI--MMQILTPEARSRLANLRLTRPDFVEQ 38


>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 28.4 bits (63), Expect = 0.77
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 29  STGVLFVCTHRTLMDPVVLSTVLRRKIPAVTYSI 62
              V+ +  H+T  DP ++S +L +  P +  + 
Sbjct: 129 GHNVVLISNHQTEADPAIISLLLEKTNPYIAENT 162


>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 179

 Score = 27.9 bits (62), Expect = 0.82
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 80  IRDVDAEKIKRELSNGDLVVCPEGT 104
           +RD + + I+  +  GD++  P G 
Sbjct: 107 VRDKEDKWIRISMEKGDMITLPAGI 131


>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 105

 Score = 26.6 bits (59), Expect = 1.3
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 65 LSEILSPIPTVRLTRIRDVDAEKIKR 90
          L+++L      RL+ +  V  EK K 
Sbjct: 36 LAQVLDQSARARLSNLALVKPEKTKA 61


>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 146

 Score = 26.7 bits (58), Expect = 1.8
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 190 RILAATLGFECTNFTRKDKYRVLAGNDGTVSYTSFVDQIKK 230
           + +  ++G + T+    D  R ++   G ++   F   + K
Sbjct: 106 KHVLTSIGEKLTDAEVDDMLREVSDGSGEINIQQFAALLSK 146


>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 142

 Score = 26.0 bits (57), Expect = 2.9
 Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 5/28 (17%)

Query: 88  IKRELSNGDLVVCPEGTTCREPFLLRFS 115
           I +E     L     GT     FLLRFS
Sbjct: 14  ISKERERALLKDQQPGT-----FLLRFS 36


>gi|147905802|ref|NP_001079458.1|(49-190:190) hypothetical protein
           LOC379145 [Xenopus laevis]   gi|27552841|gb|AAH42934.1|
           MGC53335 protein [Xenopus laevis] 
           gi|148231599|ref|NP_001080252.1| myosin light chain,
           alkali, fast skeletal muscle [Xenopus laevis] 
           gi|602988|gb|AAB00988.1| MLC1f/3f gene product 
           gi|27371205|gb|AAH41529.1| Myl1-prov protein [Xenopus
           laevis]   gi|45360563|ref|NP_988954.1| myosin, light
           chain 1, alkali; skeletal, fast [Xenopus (Silurana)
           tropicalis]   gi|38174703|gb|AAH61302.1| Myosin, light
           chain 1, alkali; skeletal, fast [Xenopus tropicalis] 
           gi|58476384|gb|AAH89727.1| Myosin, light chain 1,
           alkali; skeletal, fast [Xenopus tropicalis] 
           gi|89272939|emb|CAJ83178.1| myosin, light polypeptide 1,
           alkali; skeletal, fast [Xenopus tropicalis] 
           gi|197246634|gb|AAI69133.1| Myl1 protein [Xenopus
           tropicalis]  E=2e-66 s/c=1.79 id=85% cov=99%
          Length = 142

 Score = 25.3 bits (54), Expect = 4.9
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 189 QRILAATLGFECTNFTRKDKYRVLAGNDGTVSYTSFVDQIKKV 231
            R + ATLG +      +        ++G ++Y +FV  I  V
Sbjct: 100 LRHVLATLGEKMKEEEVESLLAGQEDSNGCINYEAFVKHIMSV 142


>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase
           isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 223

 Score = 25.6 bits (56), Expect = 5.1
 Identities = 5/20 (25%), Positives = 7/20 (35%)

Query: 147 GLDPMFFFMNPRPVYEVTFL 166
           GL+       P P   +  L
Sbjct: 33  GLEEESLGSVPAPACALLLL 52


>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 88

 Score = 24.3 bits (53), Expect = 6.1
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 79  RIRDVDAEKIKRELSNGDLVVCPEGTTCR 107
            +   D +K    +  GDLV  P+G  CR
Sbjct: 48  EVTTEDGKK--YVIEKGDLVTFPKGLRCR 74


>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 229

 Score = 24.9 bits (54), Expect = 8.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 147 GLDPMFFFMNPRPVYEVTFL 166
           G+DP    M PRPV  V  L
Sbjct: 35  GMDPELLSMVPRPVCAVLLL 54


>d1nqka_ c.1.16.4 (A:) Alkanesulfonate monooxygenase SsuD
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 25.0 bits (53), Expect = 9.2
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 96  DLVVCPEGTTCREPFLLRFSALFAELTDRI 125
             V+ P G +C + +L+  +A    +T R+
Sbjct: 45  TGVLIPTGRSCEDAWLV--AASMIPVTQRL 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 928,624
Number of extensions: 43571
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 16
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.2 bits)