BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038705
(861 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 18/211 (8%)
Query: 598 LKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNL 657
L++ ++D L L + + LE + ++ L LP + LN L+E+ I CP L
Sbjct: 106 LQHXTID-AAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPEL 163
Query: 658 ISFP------DGGFLSSTLTKLWIYECE--KLKALPNGMHNLTSLQELEIGDLPSMVYFP 709
P D L L E +++LP + NL +L+ L+I + P P
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP 223
Query: 710 EDGFPTNLHSLEIRDMKMWKSLIEWEPL-NRFTSLRRLSIHGCQDMVSFPQDNIGMMLPA 768
+L LE D++ +L + P+ L+RL + C ++++ P D +
Sbjct: 224 AI---HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT--- 277
Query: 769 SLTKLEIVRFSNLEYLSSVGESLPSLECLIL 799
L KL++ NL L S+ LP+ C+IL
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPA-NCIIL 307
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 19/162 (11%)
Query: 51 DVLEDHKRHRFSENLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAH 110
DVL +RH ++ R S R E + + L+ L+ T G+
Sbjct: 30 DVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT-GRALKATADLLEDATQPGRV---- 84
Query: 111 SVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHT 170
L LR + P L HLQ+ + + LP++ + L T
Sbjct: 85 -------------ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLET 131
Query: 171 LLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGN 212
L L + L+ L A++ SL +L L L E+P+ + +
Sbjct: 132 LTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 500 LQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCA 559
L+ L + C L +LP+ L S E + L+ +S++ T SL A
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGE---HQGLVNLQSLRLEWTGIRSL--------PA 200
Query: 560 SLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNN 619
S+ +L L+ L +++ A + +LPK L+ L + C L++
Sbjct: 201 SIANL-------QNLKSLKIRNSPLSALGPAIHHLPK-LEELDLRGCTALRNYPPIFGGR 252
Query: 620 SSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFP 661
+ L+ + + C NL+ LP + +L L+++ + C NL P
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 582 CGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLI-VLPDGL 640
C + S+ +P + L ++ KL+SL + + + + K+S +N I LPDG+
Sbjct: 14 CNSKGLTSVPTGIPSSATRLELES-NKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGV 71
Query: 641 L-KLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHN-LTSLQEL 697
KL L +++ H L S P+G F T K + +LK++P+G+ + LTSLQ++
Sbjct: 72 FDKLTKLTILYL-HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 116 LFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNL 168
+FK L L L G S+ +P+ I +L +L+ LDLS ++ +LP + + L
Sbjct: 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 33/183 (18%)
Query: 112 VLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTL 171
V L KL +R+ ++ P + +L +LQYL +S T IK LP+ V+K+ +L +
Sbjct: 74 VFSNLPKLHEIRIEKANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKV 131
Query: 172 LLE-----NCHRLKK------------LCANMGSLIKLHH----------LKNSNVKALE 204
LL+ N H +++ L N + ++H+ L S+ LE
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191
Query: 205 EMPKGI---GNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKE 261
E+P + + +L +SR + GL LK L+ + T ++ KL ++ E
Sbjct: 192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR-ARSTYNLKKLPTLEKLVALME 250
Query: 262 AQL 264
A L
Sbjct: 251 ASL 253
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 631 ENLIVLPDGLL-KLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMH 689
+L LP+G+ +L L ++++ L S P+G F T +L++LPNG+
Sbjct: 38 NSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96
Query: 690 N-LTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEP---LNRFTSLRR 745
+ LT L+EL + + + P+ F +++D++++++ ++ P +R TSL+
Sbjct: 97 DKLTQLKELAL-NTNQLQSLPDGVFD---KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 746 LSIH 749
+ +H
Sbjct: 153 IWLH 156
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 118 KLQRLRVLSLRGYSIFHVPSSI-GDLKHLQYLDLSETKIKTLPESV-NKLWNLHTLLLEN 175
+L L L L G + +P+ + L L YL+LS ++++LP V +KL L L L N
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-N 108
Query: 176 CHRLKKLCANMGSLIKLHHLKNSNV--KALEEMPKGI 210
++L+ L G KL LK+ + L+ +P G+
Sbjct: 109 TNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVPDGV 143
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 160 ESVNKLWN-LHTLLLENCH---RLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTH 215
E+ NK N LLE+ +LK+ N+ L KL+ +++KAL+ + + IG +
Sbjct: 51 EAHNKALNQFKRKLLEHRRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMK 110
Query: 216 LLTLSRFVVGKDVGS----GLRT----LKLLKHLQGTLDISKL 250
L+ +++V G G+R KL K ++ TLDI+ L
Sbjct: 111 ELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTL 153
>pdb|1DS7|A Chain A, A Minor Fmn-Dependent Nitroreductase From Escherichia Coli
B
pdb|1ICR|A Chain A, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICR|B Chain B, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICU|A Chain A, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICU|B Chain B, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICU|C Chain C, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICU|D Chain D, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1OO5|A Chain A, Studies On The Nitroreductase Prodrug-Activating System.
Crystal Structures Of The Enzyme Active Form And
Complexes With The Inhibitor Dicoumarol And
Dinitrobenzamide Prodrugs
pdb|1OO5|B Chain B, Studies On The Nitroreductase Prodrug-Activating System.
Crystal Structures Of The Enzyme Active Form And
Complexes With The Inhibitor Dicoumarol And
Dinitrobenzamide Prodrugs
pdb|1OO6|A Chain A, Nitroreductase From E-coli In Complex With The
Dinitrobenzamide Prodrug Sn23862
pdb|1OO6|B Chain B, Nitroreductase From E-coli In Complex With The
Dinitrobenzamide Prodrug Sn23862
pdb|1OON|A Chain A, Nitroreductase From E-coli In Complex With The
Dinitrobenzamide Prodrug Sn27217
pdb|1OON|B Chain B, Nitroreductase From E-coli In Complex With The
Dinitrobenzamide Prodrug Sn27217
pdb|1OOQ|A Chain A, Nitroreductase From E-Coli In Complex With The Inhibitor
Dicoumarol
pdb|1OOQ|B Chain B, Nitroreductase From E-Coli In Complex With The Inhibitor
Dicoumarol
pdb|1IDT|A Chain A, Structural Studies On A Prodrug-Activating System-Cb1954
And Fmn-Dependent Nitroreductase
pdb|1IDT|B Chain B, Structural Studies On A Prodrug-Activating System-Cb1954
And Fmn-Dependent Nitroreductase
pdb|1YKI|A Chain A, The Structure Of E. Coli Nitroreductase Bound With The
Antibiotic Nitrofurazone
pdb|1YKI|B Chain B, The Structure Of E. Coli Nitroreductase Bound With The
Antibiotic Nitrofurazone
pdb|1YKI|C Chain C, The Structure Of E. Coli Nitroreductase Bound With The
Antibiotic Nitrofurazone
pdb|1YKI|D Chain D, The Structure Of E. Coli Nitroreductase Bound With The
Antibiotic Nitrofurazone
pdb|1YLR|A Chain A, The Structure Of E.Coli Nitroreductase With Bound Acetate,
Crystal Form 1
pdb|1YLR|B Chain B, The Structure Of E.Coli Nitroreductase With Bound Acetate,
Crystal Form 1
pdb|1YLU|A Chain A, The Structure Of E. Coli Nitroreductase With Bound
Acetate, Crystal Form 2
pdb|1YLU|B Chain B, The Structure Of E. Coli Nitroreductase With Bound
Acetate, Crystal Form 2
Length = 217
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 3 DLGRKFFRDLHAKSFFQQSSCDTSRFVMHHLINDLAQWAAGDIYFRMGDVL 53
D GRKFF D+H K ++D A+W A +Y +G+ L
Sbjct: 118 DKGRKFFADMHRKD-----------------LHDDAEWMAKQVYLNVGNFL 151
>pdb|1DS7|B Chain B, A Minor Fmn-Dependent Nitroreductase From Escherichia Coli
B
Length = 217
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 3 DLGRKFFRDLHAKSFFQQSSCDTSRFVMHHLINDLAQWAAGDIYFRMGDVL 53
D GRKFF D+H K ++D A+W A +Y +G+ L
Sbjct: 118 DKGRKFFADMHRKD-----------------LHDDAEWMAKQVYLNVGNFL 151
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 32/252 (12%)
Query: 135 VPSSIGDLKHLQ----YLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLI 190
+PSS+G L L+ +L++ E +I P+ + + L TL+L+ ++ + + +
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 191 KLHHLKNSNVKALEEMPKGIGNLTHL--LTLSRFVVGKDVGSGLRTLKLLKHLQGTLDIS 248
L+ + SN + E+PK IG L +L L LS ++ + L + L L L+ +
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD--LNTN 545
Query: 249 KLENVKDASEAKEAQLIEKRNXXXXXXEWTSSTSDDPMEHE----NVTLMLDGLKPH--- 301
A+ K++ I + +D M+ E L G++
Sbjct: 546 LFNGTIPAAMFKQSGKIAANFIAGKRYVY---IKNDGMKKECHGAGNLLEFQGIRSEQLN 602
Query: 302 ----RNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPS-VGQLPLLKHLF 356
RN +T R YGG T PT+ + S ++ L +P +G +P +LF
Sbjct: 603 RLSTRNPCNITSRVYGGHTSPTFDNNGS---MMFLDMSYNMLSGYIPKEIGSMP---YLF 656
Query: 357 IIEMTSVKMVGS 368
I+ + + GS
Sbjct: 657 ILNLGHNDISGS 668
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 32/252 (12%)
Query: 135 VPSSIGDLKHLQ----YLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLI 190
+PSS+G L L+ +L++ E +I P+ + + L TL+L+ ++ + + +
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 191 KLHHLKNSNVKALEEMPKGIGNLTHL--LTLSRFVVGKDVGSGLRTLKLLKHLQGTLDIS 248
L+ + SN + E+PK IG L +L L LS ++ + L + L L L+ +
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD--LNTN 548
Query: 249 KLENVKDASEAKEAQLIEKRNXXXXXXEWTSSTSDDPMEHE----NVTLMLDGLKPH--- 301
A+ K++ I + +D M+ E L G++
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVY---IKNDGMKKECHGAGNLLEFQGIRSEQLN 605
Query: 302 ----RNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPS-VGQLPLLKHLF 356
RN +T R YGG T PT+ + S ++ L +P +G +P +LF
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGS---MMFLDMSYNMLSGYIPKEIGSMP---YLF 659
Query: 357 IIEMTSVKMVGS 368
I+ + + GS
Sbjct: 660 ILNLGHNDISGS 671
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 130/291 (44%), Gaps = 72/291 (24%)
Query: 555 IDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAE 614
+ C SLT L ELP +L+ L V + NL LS +LP L+YL V + +L+ L E
Sbjct: 97 VASCNSLTEL---PELPQSLKSLLVDN-NNLKALS---DLPPLLEYLGVSNN-QLEKLPE 148
Query: 615 RLDNNSSLEAVKISYCENLIVLPDGLLKL-------NHLQEIFISHCPNLISFPDGGFLS 667
L N+S L+ + + +L LPD L N L+E+ P L + P FL+
Sbjct: 149 -LQNSSFLKIIDVD-NNSLKKLPDLPPSLEFIAAGNNQLEEL-----PELQNLP---FLT 198
Query: 668 STLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKM 727
+ +KL LP + ++ + + + +LP + P F T +++ D +
Sbjct: 199 AIYAD--NNSLKKLPDLPLSLESIVAGNNI-LEELPELQNLP---FLTTIYA----DNNL 248
Query: 728 WKSLIEWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVR--FS------ 779
K+L + P SL L++ + P+ LP SLT L++ FS
Sbjct: 249 LKTLPDLPP-----SLEALNVRDNY-LTDLPE------LPQSLTFLDVSENIFSGLSELP 296
Query: 780 -NLEYLSSVGESLPSLECLILDDCPKLRYFPDKGLPPSLLQLHISNCPLIE 829
NL YL++ + SL C LPPSL +L++SN LIE
Sbjct: 297 PNLYYLNASSNEIRSL-------C---------DLPPSLEELNVSNNKLIE 331
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 125 LSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLP-ESVNKLWNLHTLLLENCHRLKKLC 183
L L G VP + + KHL +DLS +I TL +S + + L TL+L +RL+ +
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCIP 94
Query: 184 ANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKD 227
+K L + + + +P+G N L LS +G +
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFN--DLSALSHLAIGAN 136
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 117 FKLQ-RLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPES-VNKLWNLHTLLLE 174
F+ Q LRV+ + VP + L LDL KI + + L NLHTL+L
Sbjct: 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILI 84
Query: 175 NCHRLKKLCANMGSLIKLHHL---KNSNVKALEEMPKGIGNL-THLLTLSRFVVGKDVGS 230
N K L+KL L KN + E+MPK + L H +++ V K V +
Sbjct: 85 NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK--VRKSVFN 142
Query: 231 GLRTLKLLKHLQGTLDISKLEN 252
GL + +++ L S +EN
Sbjct: 143 GLNQMIVVELGTNPLKSSGIEN 164
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 112 VLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTL 171
V L KL +R+ ++ P + +L +LQYL +S T IK LP+ V+K+ +L +
Sbjct: 74 VFSNLPKLHEIRIEKANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKV 131
Query: 172 LLE 174
LL+
Sbjct: 132 LLD 134
>pdb|1ICV|A Chain A, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICV|B Chain B, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICV|C Chain C, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
pdb|1ICV|D Chain D, The Structure Of Escherichia Coli Nitroreductase Complexed
With Nicotinic Acid
Length = 217
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 17/51 (33%)
Query: 3 DLGRKFFRDLHAKSFFQQSSCDTSRFVMHHLINDLAQWAAGDIYFRMGDVL 53
D GRKFF D H K ++D A+W A +Y +G+ L
Sbjct: 118 DKGRKFFADXHRKD-----------------LHDDAEWXAKQVYLNVGNFL 151
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 117 FKLQ-RLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPES-VNKLWNLHTLLLE 174
F+ Q LRV+ + VP + L LDL KI + + L NLHTL+L
Sbjct: 27 FRCQCHLRVVQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILI 84
Query: 175 NCHRLKKLCANMGSLIKLHHL---KNSNVKALEEMPKGIGNL-THLLTLSRFVVGKDVGS 230
N K L+KL L KN + E+MPK + L H +++ V K V +
Sbjct: 85 NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK--VRKSVFN 142
Query: 231 GLRTLKLLKHLQGTLDISKLEN 252
GL + +++ L S +EN
Sbjct: 143 GLNQMIVVELGTNPLKSSGIEN 164
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 569 ELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDH 605
ELPA+LE+L +C N LS + LP +LK+L VD+
Sbjct: 97 ELPASLEYL--DACDNR--LSTLPELPASLKHLDVDN 129
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 31/231 (13%)
Query: 550 LEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYL---SVDHC 606
+ Y C +T + ++P+T+ + + N + L ++ N+P ++K + + C
Sbjct: 62 IGYAAFQGCRKVTEI----KIPSTVREIGEFAFENCSKLEII-NIPDSVKXIGRCTFSGC 116
Query: 607 LKLKSLAERLDNNS-SLEAVKISYCE-NLIVLPDGLLKLNHLQEIFISHCPNL--ISFPD 662
LKS+ L S +EA K C+ I +P+G+ + E F + C +L +S PD
Sbjct: 117 YALKSILLPLXLKSIGVEAFK--GCDFKEITIPEGVTVIG--DEAF-ATCESLEYVSLPD 171
Query: 663 GGFLSSTLTKLWIYECEKLKA--LPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSL 720
TL C KLK+ LP NL +++ + + FP +L+ L
Sbjct: 172 S---XETLHNGLFSGCGKLKSIKLP---RNLKIIRDYCFAE---CILLENXEFPNSLYYL 222
Query: 721 EIRDMKMWKSLIEWEPL-NRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASL 770
D + K+ ++ + + FT L + +GC D+ S N + + SL
Sbjct: 223 --GDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSL 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,051,722
Number of Sequences: 62578
Number of extensions: 1095872
Number of successful extensions: 2680
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2626
Number of HSP's gapped (non-prelim): 88
length of query: 861
length of database: 14,973,337
effective HSP length: 107
effective length of query: 754
effective length of database: 8,277,491
effective search space: 6241228214
effective search space used: 6241228214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)