Query 038705
Match_columns 861
No_of_seqs 480 out of 4009
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 02:31:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.9E-43 4.1E-48 431.1 28.5 533 62-726 68-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.2E-43 1.1E-47 427.2 28.1 492 87-759 68-565 (968)
3 PLN03210 Resistant to P. syrin 100.0 8.6E-29 1.9E-33 301.1 30.0 429 8-661 471-910 (1153)
4 KOG0472 Leucine-rich repeat pr 100.0 5.9E-33 1.3E-37 271.0 -14.1 477 86-754 43-541 (565)
5 KOG4658 Apoptotic ATPase [Sign 99.9 3E-28 6.4E-33 279.5 10.6 213 1-224 452-675 (889)
6 KOG0472 Leucine-rich repeat pr 99.9 1.4E-30 3.1E-35 254.4 -7.7 263 64-362 46-309 (565)
7 KOG4194 Membrane glycoprotein 99.9 2.9E-28 6.3E-33 249.1 5.6 365 121-653 79-448 (873)
8 KOG0618 Serine/threonine phosp 99.9 6.2E-28 1.3E-32 260.4 -3.4 465 116-751 41-510 (1081)
9 KOG4194 Membrane glycoprotein 99.9 2.6E-26 5.6E-31 235.0 3.8 372 379-829 77-453 (873)
10 KOG0444 Cytoskeletal regulator 99.9 2E-27 4.4E-32 244.5 -4.5 384 118-722 5-393 (1255)
11 KOG0618 Serine/threonine phosp 99.9 3.3E-27 7.2E-32 254.8 -4.9 471 110-753 11-488 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 1.9E-25 4.1E-30 230.1 -1.0 112 499-662 269-380 (1255)
13 PLN03210 Resistant to P. syrin 99.9 7E-22 1.5E-26 240.9 25.1 267 499-783 635-908 (1153)
14 KOG4237 Extracellular matrix p 99.7 2E-19 4.3E-24 176.7 -2.8 116 109-225 79-199 (498)
15 PRK15387 E3 ubiquitin-protein 99.6 2.5E-15 5.3E-20 169.6 14.8 261 302-660 201-461 (788)
16 PRK15387 E3 ubiquitin-protein 99.6 4.4E-15 9.6E-20 167.6 16.2 141 594-756 320-460 (788)
17 KOG4237 Extracellular matrix p 99.6 7.3E-17 1.6E-21 158.9 -1.1 102 121-223 68-173 (498)
18 KOG0617 Ras suppressor protein 99.5 1.5E-16 3.3E-21 138.1 -4.6 135 80-224 25-160 (264)
19 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.6E-20 132.6 -2.6 149 63-224 33-183 (264)
20 PRK15370 E3 ubiquitin-protein 99.5 1.3E-13 2.8E-18 157.0 11.6 83 120-210 178-260 (754)
21 PRK15370 E3 ubiquitin-protein 99.5 1.1E-13 2.4E-18 157.6 10.7 230 496-754 197-428 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.4 1E-12 2.2E-17 152.2 10.8 147 85-242 520-671 (889)
23 cd00116 LRR_RI Leucine-rich re 99.2 4.7E-12 1E-16 134.6 0.9 231 498-753 23-290 (319)
24 cd00116 LRR_RI Leucine-rich re 99.1 3.2E-11 6.9E-16 128.2 5.7 118 82-203 17-150 (319)
25 PF14580 LRR_9: Leucine-rich r 99.0 8.7E-10 1.9E-14 101.9 5.8 133 82-227 13-153 (175)
26 KOG4341 F-box protein containi 98.9 1.7E-11 3.6E-16 122.7 -8.1 287 499-830 139-441 (483)
27 KOG4341 F-box protein containi 98.9 4.3E-11 9.4E-16 119.8 -6.6 90 328-424 139-231 (483)
28 KOG3207 Beta-tubulin folding c 98.7 1.9E-09 4.1E-14 108.9 0.3 133 618-751 144-281 (505)
29 COG4886 Leucine-rich repeat (L 98.7 1.4E-08 3.1E-13 111.0 5.6 107 116-224 112-219 (394)
30 KOG0532 Leucine-rich repeat (L 98.7 9.4E-10 2E-14 114.6 -3.9 106 111-219 89-194 (722)
31 KOG3207 Beta-tubulin folding c 98.7 7.8E-09 1.7E-13 104.6 2.0 207 499-729 122-340 (505)
32 PF13855 LRR_8: Leucine rich r 98.6 2.4E-08 5.3E-13 75.6 3.9 58 120-177 1-60 (61)
33 PF14580 LRR_9: Leucine-rich r 98.6 5.7E-08 1.2E-12 89.9 5.8 105 116-224 15-123 (175)
34 PLN03150 hypothetical protein; 98.6 4E-08 8.7E-13 112.3 5.9 100 121-220 419-521 (623)
35 PRK15386 type III secretion pr 98.6 5.2E-07 1.1E-11 93.9 11.7 94 616-724 48-141 (426)
36 COG4886 Leucine-rich repeat (L 98.5 9.1E-08 2E-12 104.7 6.5 128 82-220 110-238 (394)
37 PF13855 LRR_8: Leucine rich r 98.5 5.8E-08 1.3E-12 73.5 3.4 59 143-201 1-60 (61)
38 KOG1259 Nischarin, modulator o 98.5 1.4E-08 2.9E-13 97.4 -0.4 105 116-224 303-409 (490)
39 PLN03150 hypothetical protein; 98.5 2.4E-07 5.3E-12 105.9 7.6 111 598-708 420-531 (623)
40 KOG1259 Nischarin, modulator o 98.5 5.3E-08 1.1E-12 93.4 1.6 135 87-224 181-339 (490)
41 PRK15386 type III secretion pr 98.4 1.2E-06 2.5E-11 91.3 9.7 61 517-585 47-107 (426)
42 KOG0532 Leucine-rich repeat (L 98.4 4.6E-08 9.9E-13 102.3 -0.6 145 67-225 79-245 (722)
43 KOG1909 Ran GTPase-activating 98.3 8.3E-08 1.8E-12 94.6 -0.1 91 111-201 21-131 (382)
44 PF12799 LRR_4: Leucine Rich r 98.2 7.8E-07 1.7E-11 61.2 3.0 39 121-159 2-40 (44)
45 KOG2120 SCF ubiquitin ligase, 98.2 3E-08 6.5E-13 95.2 -7.0 157 597-754 186-351 (419)
46 KOG1909 Ran GTPase-activating 98.1 2.7E-07 5.8E-12 91.2 -1.4 92 82-177 24-131 (382)
47 KOG0531 Protein phosphatase 1, 98.1 9.9E-07 2.1E-11 96.5 1.4 111 113-227 88-199 (414)
48 KOG2120 SCF ubiquitin ligase, 98.1 3.1E-08 6.8E-13 95.0 -9.4 178 620-826 185-374 (419)
49 PF12799 LRR_4: Leucine Rich r 97.9 7.2E-06 1.6E-10 56.4 2.9 36 143-178 1-36 (44)
50 COG5238 RNA1 Ran GTPase-activa 97.9 2.1E-06 4.6E-11 81.6 -0.0 95 111-206 21-135 (388)
51 KOG3665 ZYG-1-like serine/thre 97.7 2.3E-05 4.9E-10 89.4 4.4 136 61-205 120-265 (699)
52 KOG4579 Leucine-rich repeat (L 97.7 1.2E-05 2.5E-10 68.5 1.4 93 115-209 48-141 (177)
53 KOG0531 Protein phosphatase 1, 97.7 7.8E-06 1.7E-10 89.5 0.2 106 117-226 69-174 (414)
54 KOG1859 Leucine-rich repeat pr 97.7 4E-06 8.7E-11 90.6 -3.1 82 116-201 183-265 (1096)
55 KOG2982 Uncharacterized conser 97.5 4E-05 8.7E-10 74.2 1.6 35 142-176 70-107 (418)
56 KOG1859 Leucine-rich repeat pr 97.5 1.2E-05 2.7E-10 86.9 -2.1 126 62-201 163-290 (1096)
57 KOG3665 ZYG-1-like serine/thre 97.3 9.8E-05 2.1E-09 84.4 2.5 107 87-201 121-231 (699)
58 KOG2982 Uncharacterized conser 97.3 0.00013 2.7E-09 70.9 2.1 134 618-752 69-210 (418)
59 KOG4579 Leucine-rich repeat (L 97.2 6.9E-05 1.5E-09 64.0 -0.3 113 63-185 27-141 (177)
60 KOG1947 Leucine rich repeat pr 97.1 2.4E-05 5.1E-10 88.6 -5.1 193 618-832 241-444 (482)
61 KOG1947 Leucine rich repeat pr 96.9 5.5E-05 1.2E-09 85.7 -4.8 62 769-830 352-416 (482)
62 KOG1644 U2-associated snRNP A' 96.8 0.001 2.2E-08 61.2 3.7 102 120-223 42-149 (233)
63 KOG2123 Uncharacterized conser 96.7 0.00017 3.6E-09 69.4 -2.5 103 116-221 15-124 (388)
64 PF00560 LRR_1: Leucine Rich R 96.7 0.00069 1.5E-08 38.6 0.9 19 145-163 2-20 (22)
65 KOG1644 U2-associated snRNP A' 96.7 0.0021 4.5E-08 59.3 4.3 89 112-201 56-151 (233)
66 KOG2739 Leucine-rich acidic nu 96.3 0.0029 6.2E-08 61.1 2.7 105 117-224 40-153 (260)
67 PF00560 LRR_1: Leucine Rich R 96.2 0.0025 5.4E-08 36.3 1.3 22 121-142 1-22 (22)
68 KOG2123 Uncharacterized conser 96.1 0.001 2.2E-08 64.2 -1.3 81 116-197 37-124 (388)
69 KOG2739 Leucine-rich acidic nu 95.6 0.0048 1.1E-07 59.6 1.3 16 737-752 139-154 (260)
70 COG5238 RNA1 Ran GTPase-activa 95.4 0.007 1.5E-07 58.4 1.5 89 138-227 25-133 (388)
71 KOG0473 Leucine-rich repeat pr 95.4 0.001 2.2E-08 62.3 -4.0 86 116-202 38-123 (326)
72 PF13306 LRR_5: Leucine rich r 95.0 0.051 1.1E-06 48.4 5.8 104 82-200 6-113 (129)
73 PF13504 LRR_7: Leucine rich r 94.9 0.013 2.9E-07 30.7 1.1 16 144-159 2-17 (17)
74 PF13306 LRR_5: Leucine rich r 94.6 0.21 4.6E-06 44.3 9.0 35 618-653 10-44 (129)
75 KOG3864 Uncharacterized conser 94.1 0.0056 1.2E-07 56.6 -2.6 89 716-807 102-191 (221)
76 PF13504 LRR_7: Leucine rich r 93.8 0.036 7.9E-07 29.1 1.2 17 120-136 1-17 (17)
77 KOG0473 Leucine-rich repeat pr 93.0 0.0068 1.5E-07 57.1 -4.0 91 84-183 38-128 (326)
78 smart00370 LRR Leucine-rich re 92.0 0.12 2.5E-06 30.8 1.8 20 142-161 1-20 (26)
79 smart00369 LRR_TYP Leucine-ric 92.0 0.12 2.5E-06 30.8 1.8 20 142-161 1-20 (26)
80 KOG3864 Uncharacterized conser 91.9 0.016 3.4E-07 53.8 -3.0 74 316-395 92-166 (221)
81 smart00369 LRR_TYP Leucine-ric 87.5 0.37 8E-06 28.6 1.5 21 119-139 1-21 (26)
82 smart00370 LRR Leucine-rich re 87.5 0.37 8E-06 28.6 1.5 21 119-139 1-21 (26)
83 smart00364 LRR_BAC Leucine-ric 79.6 1 2.3E-05 26.5 1.0 18 143-160 2-19 (26)
84 smart00367 LRR_CC Leucine-rich 78.7 1.6 3.4E-05 25.9 1.7 16 792-807 2-17 (26)
85 PF13516 LRR_6: Leucine Rich r 77.1 1.9 4.1E-05 24.9 1.7 12 144-155 3-14 (24)
86 smart00365 LRR_SD22 Leucine-ri 76.4 1.7 3.7E-05 25.8 1.3 17 142-158 1-17 (26)
87 KOG4308 LRR-containing protein 60.9 0.71 1.5E-05 50.9 -4.5 58 120-177 144-215 (478)
88 PF14162 YozD: YozD-like prote 54.7 14 0.00029 25.7 2.4 19 2-20 11-29 (57)
89 smart00368 LRR_RI Leucine rich 54.3 8.2 0.00018 23.3 1.3 14 143-156 2-15 (28)
90 KOG4308 LRR-containing protein 32.5 5.7 0.00012 44.0 -3.2 137 88-228 144-304 (478)
91 KOG3763 mRNA export factor TAP 30.3 25 0.00055 38.6 1.3 14 598-611 272-285 (585)
92 KOG3763 mRNA export factor TAP 30.3 23 0.00049 39.0 0.9 38 665-702 215-254 (585)
93 COG3432 Predicted transcriptio 27.5 77 0.0017 26.0 3.2 35 3-37 46-81 (95)
94 PF05725 FNIP: FNIP Repeat; I 26.7 1.1E+02 0.0024 20.8 3.6 30 693-723 13-42 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-43 Score=431.09 Aligned_cols=533 Identities=19% Similarity=0.174 Sum_probs=335.5
Q ss_pred CCceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhc-cCCCCcccEEEccCccccc-cCccc
Q 038705 62 SENLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYM-LFKLQRLRVLSLRGYSIFH-VPSSI 139 (861)
Q Consensus 62 ~~~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~-lp~~~ 139 (861)
..+++.+++.++.+... ....+..+++||+|.+.++. +...+|.+ |..+++||+|+|++|.++. +|.
T Consensus 68 ~~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~--------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-- 136 (968)
T PLN00113 68 SSRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQ--------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-- 136 (968)
T ss_pred CCcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCc--------cCCcCChHHhccCCCCCEEECcCCccccccCc--
Confidence 45789999988876543 24678889999999886543 44578888 7799999999999999874 454
Q ss_pred CCCCccceeeccCCccc-ccchhhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCcccccccccccc
Q 038705 140 GDLKHLQYLDLSETKIK-TLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLT 218 (861)
Q Consensus 140 ~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 218 (861)
+.+++|++|+|++|.+. .+|..|+++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 56899999999999987 78888999999999999999888899999999999999999999988888999999999998
Q ss_pred ccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhccc
Q 038705 219 LSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGL 298 (861)
Q Consensus 219 L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 298 (861)
|++..+... ...+..+..+.+|+.|++++|...+.. ...+
T Consensus 217 L~L~~n~l~------------------------------~~~p~~l~~l~~L~~L~L~~n~l~~~~----------p~~l 256 (968)
T PLN00113 217 IYLGYNNLS------------------------------GEIPYEIGGLTSLNHLDLVYNNLTGPI----------PSSL 256 (968)
T ss_pred EECcCCccC------------------------------CcCChhHhcCCCCCEEECcCceecccc----------ChhH
Confidence 865443211 011112344455555555554432211 1223
Q ss_pred CCCCCccEEEEeecCCC-CCCcCCCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeeccccceeEECccccCCcCc
Q 038705 299 KPHRNLEELTIRGYGGT-TFPTWMGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCS 376 (861)
Q Consensus 299 ~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 376 (861)
..+++|+.|++++|... .+|.++. .+++|+.|++++|.+.+.+| .+..+++|+.|++++|.....++..+..
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---- 330 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS---- 330 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHh--hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc----
Confidence 44455555555555432 3444442 25556666666665555555 4555556666666555433333222211
Q ss_pred CCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccce
Q 038705 377 VPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCK 456 (861)
Q Consensus 377 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~ 456 (861)
+++|+.|++++ +.+.+..+..+.. +++|+.|++++ +.+.+.+|.. +..+++|+.
T Consensus 331 --l~~L~~L~L~~-n~l~~~~p~~l~~----~~~L~~L~Ls~-n~l~~~~p~~------------------~~~~~~L~~ 384 (968)
T PLN00113 331 --LPRLQVLQLWS-NKFSGEIPKNLGK----HNNLTVLDLST-NNLTGEIPEG------------------LCSSGNLFK 384 (968)
T ss_pred --CCCCCEEECcC-CCCcCcCChHHhC----CCCCcEEECCC-CeeEeeCChh------------------HhCcCCCCE
Confidence 44455555444 2333333322322 44455555554 2333333322 112233333
Q ss_pred EEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEecccccc
Q 038705 457 LEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKE 536 (861)
Q Consensus 457 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 536 (861)
+++++|...... + ..+..+ ++|+.|++++|.+.+..|..+..+++|+.|++++|. +
T Consensus 385 L~l~~n~l~~~~---------p------------~~~~~~-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~--l 440 (968)
T PLN00113 385 LILFSNSLEGEI---------P------------KSLGAC-RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN--L 440 (968)
T ss_pred EECcCCEecccC---------C------------HHHhCC-CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc--c
Confidence 333333211100 0 000011 255556666665555555555556666666666552 2
Q ss_pred cccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhc
Q 038705 537 ESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERL 616 (861)
Q Consensus 537 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 616 (861)
.......+..+++|+.|++++| .....+|..... ++|+.|++++|...+.+|..+
T Consensus 441 ~~~~~~~~~~l~~L~~L~L~~n------------------------~~~~~~p~~~~~-~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 441 QGRINSRKWDMPSLQMLSLARN------------------------KFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred cCccChhhccCCCCcEEECcCc------------------------eeeeecCccccc-ccceEEECcCCccCCccChhh
Confidence 2112222234455555555555 322222211112 368888888887777778888
Q ss_pred cCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCE
Q 038705 617 DNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQE 696 (861)
Q Consensus 617 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 696 (861)
.++++|+.|++++|.+.+.+|..+.++++|++|++++|...+.+|..+..+++|+.|++++|++.+.+|..+.++++|+.
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 88888888888888888888888888888888888888877788888888888888888888888888888888888888
Q ss_pred EeecCCCCCcccCCCCCCCCccEEEecCcc
Q 038705 697 LEIGDLPSMVYFPEDGFPTNLHSLEIRDMK 726 (861)
Q Consensus 697 L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~ 726 (861)
|++++|+....+|..+.+.++....+.+|+
T Consensus 576 l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 576 VNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred EeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 888888777777766555555555555554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.2e-43 Score=427.22 Aligned_cols=492 Identities=18% Similarity=0.201 Sum_probs=309.6
Q ss_pred cCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCcccc-ccCccc-CCCCccceeeccCCccc-ccchhhh
Q 038705 87 AKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIF-HVPSSI-GDLKHLQYLDLSETKIK-TLPESVN 163 (861)
Q Consensus 87 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~-~~L~~L~~L~Ls~~~i~-~lp~~i~ 163 (861)
..+++.|.+.++. +...++..|..+++|++|+|++|.++ .+|..+ ..+++||+|+|++|+++ .+|. +
T Consensus 68 ~~~v~~L~L~~~~--------i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~ 137 (968)
T PLN00113 68 SSRVVSIDLSGKN--------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--G 137 (968)
T ss_pred CCcEEEEEecCCC--------ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--c
Confidence 3467888775532 33445555889999999999999987 677765 48999999999999887 5554 5
Q ss_pred ccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCccccccccccccccceEecccCCCCcccccccccccc
Q 038705 164 KLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQG 243 (861)
Q Consensus 164 ~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~ 243 (861)
.+.+|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|++|++..+...
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---------------- 201 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV---------------- 201 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc----------------
Confidence 6889999999998877888989999999999999999877788888888888888855432110
Q ss_pred eeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCC-CCCcCCC
Q 038705 244 TLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGT-TFPTWMG 322 (861)
Q Consensus 244 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~ 322 (861)
.. ....+..+++|+.|++++|... .+|.++.
T Consensus 202 --------------------------------------~~----------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 202 --------------------------------------GQ----------IPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred --------------------------------------Cc----------CChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 00 0111233455555555555533 4555553
Q ss_pred CCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCC
Q 038705 323 DSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGS 401 (861)
Q Consensus 323 ~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 401 (861)
.+++|++|++++|.+.+.+| .++.+++|+.|++++|.....++.. +
T Consensus 234 --~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-------------------------------l 280 (968)
T PLN00113 234 --GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-------------------------------I 280 (968)
T ss_pred --cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-------------------------------H
Confidence 36677777777777766666 5667777777777666433322222 2
Q ss_pred CCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccc
Q 038705 402 GKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLL 481 (861)
Q Consensus 402 ~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 481 (861)
.. +++|++|++++ +.+.+.+|..+. .+++|+.|++++|...... +
T Consensus 281 ~~----l~~L~~L~Ls~-n~l~~~~p~~~~------------------~l~~L~~L~l~~n~~~~~~---------~--- 325 (968)
T PLN00113 281 FS----LQKLISLDLSD-NSLSGEIPELVI------------------QLQNLEILHLFSNNFTGKI---------P--- 325 (968)
T ss_pred hh----ccCcCEEECcC-CeeccCCChhHc------------------CCCCCcEEECCCCccCCcC---------C---
Confidence 22 44555555555 234434443211 1222222332222211000 0
Q ss_pred hhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCc
Q 038705 482 WLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASL 561 (861)
Q Consensus 482 ~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 561 (861)
..+..+ ++|+.|++++|.+.+.+|..++.+++|+.|++++|... ..+|.. +..+++|+.|++++|. +
T Consensus 326 ---------~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~-~~~p~~-~~~~~~L~~L~l~~n~-l 392 (968)
T PLN00113 326 ---------VALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT-GEIPEG-LCSSGNLFKLILFSNS-L 392 (968)
T ss_pred ---------hhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE-eeCChh-HhCcCCCCEEECcCCE-e
Confidence 001111 37888888888888788888888888888888888322 233332 2446677777777773 2
Q ss_pred cccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCccccccccc
Q 038705 562 TSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLL 641 (861)
Q Consensus 562 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 641 (861)
...++.. .+.++ +|+.|++++|...+.+|..+..+++|+.|++++|.+.+.+|..+.
T Consensus 393 ~~~~p~~----------------------~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 449 (968)
T PLN00113 393 EGEIPKS----------------------LGACR-SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449 (968)
T ss_pred cccCCHH----------------------HhCCC-CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence 2211111 11222 566777777766666666666777777777777777766666666
Q ss_pred CCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC-CCCCCccEE
Q 038705 642 KLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED-GFPTNLHSL 720 (861)
Q Consensus 642 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~-~~~~~L~~L 720 (861)
.+++|+.|++++|...+.+|..+ ..++|+.|++++|++.+.+|..+.++++|++|++++|.....+|.. ..+++|++|
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 528 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528 (968)
T ss_pred cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence 67777777777776666666543 3366777777777766666666677777777777777544455543 446677777
Q ss_pred EecCccCcccccccccCCcCCCcCeEEeecCCCccccCC
Q 038705 721 EIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMVSFPQ 759 (861)
Q Consensus 721 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 759 (861)
++++|.+.+.++.. +..+++|+.|++++|+..+.+|.
T Consensus 529 ~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 529 DLSHNQLSGQIPAS--FSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ECCCCcccccCChh--HhCcccCCEEECCCCcccccCCh
Confidence 77777776666655 66677777777777766555554
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=8.6e-29 Score=301.08 Aligned_cols=429 Identities=21% Similarity=0.265 Sum_probs=276.8
Q ss_pred HHHHHHhCCCCcccCCCCCceEEchhHHHHHHHHhccce-------EEecc-cccCc-cccCCCCceeEEEEEecCCCcc
Q 038705 8 FFRDLHAKSFFQQSSCDTSRFVMHHLINDLAQWAAGDIY-------FRMGD-VLEDH-KRHRFSENLRHFSYLRGGYDGL 78 (861)
Q Consensus 8 ~~~~L~~~~ll~~~~~~~~~~~mHdlv~d~a~~~~~~~~-------~~~~~-~~~~~-~~~~~~~~~~~lsl~~~~~~~~ 78 (861)
-+++|+++||++... ..++|||++||||+++++++. +.+.. .+.+. ......++++.+++....++..
T Consensus 471 ~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred ChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 378999999998754 469999999999999987753 11110 00000 0112345678887766554432
Q ss_pred c-hhhhhcccCCccEEeecccccCcCCcccchhhhhhccCCCC-cccEEEccCccccccCcccCCCCccceeeccCCccc
Q 038705 79 K-MFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQ-RLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIK 156 (861)
Q Consensus 79 ~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~ 156 (861)
. ...+|.++++||.|.+..... ...+.....+|++|..++ .||.|++.++.++.+|..| ...+|++|++++|.+.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~--~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKW--DQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eecHHHHhcCccccEEEEecccc--cccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc
Confidence 1 235688899999998754321 011122345666666664 6999999999999998888 5789999999999999
Q ss_pred ccchhhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCccccccccccccccceEecccCCCCccccc
Q 038705 157 TLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLK 236 (861)
Q Consensus 157 ~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~ 236 (861)
.+|..+..+++|+.|++++|..+..+|. ++.+++|++|++++|.....+|..++++++|+.|++..+.
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~----------- 692 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE----------- 692 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC-----------
Confidence 9998899999999999998877778874 7888999999998887667777666666666655321100
Q ss_pred ccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCC
Q 038705 237 LLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTT 316 (861)
Q Consensus 237 ~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 316 (861)
....
T Consensus 693 ----------------------------------------------------------------------------~L~~ 696 (1153)
T PLN03210 693 ----------------------------------------------------------------------------NLEI 696 (1153)
T ss_pred ----------------------------------------------------------------------------CcCc
Confidence 0111
Q ss_pred CCcCCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEecccccccccc
Q 038705 317 FPTWMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGW 396 (861)
Q Consensus 317 ~p~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 396 (861)
+|..+ .+++|+.|++++|...+.+|.. .++|+.|+++++. +..++
T Consensus 697 Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~-i~~lP----------------------------- 741 (1153)
T PLN03210 697 LPTGI---NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA-IEEFP----------------------------- 741 (1153)
T ss_pred cCCcC---CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc-ccccc-----------------------------
Confidence 22211 1445555555555443333321 2344555554432 11110
Q ss_pred ccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEccCCCCccccccccccc
Q 038705 397 IPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRC 476 (861)
Q Consensus 397 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 476 (861)
..+ . +++|+.|.+.+|... .++..+..+.
T Consensus 742 --~~~-~----l~~L~~L~l~~~~~~--~l~~~~~~l~------------------------------------------ 770 (1153)
T PLN03210 742 --SNL-R----LENLDELILCEMKSE--KLWERVQPLT------------------------------------------ 770 (1153)
T ss_pred --ccc-c----ccccccccccccchh--hccccccccc------------------------------------------
Confidence 000 1 445555555443211 1111000000
Q ss_pred ccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEec
Q 038705 477 CPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYID 556 (861)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 556 (861)
......|++|+.|++++|.....+|..++++++|+.|++++| ..+..+|.. ..+++|+.|+++
T Consensus 771 --------------~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C-~~L~~LP~~--~~L~sL~~L~Ls 833 (1153)
T PLN03210 771 --------------PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC-INLETLPTG--INLESLESLDLS 833 (1153)
T ss_pred --------------hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC-CCcCeeCCC--CCccccCEEECC
Confidence 000011258888999988888888888999999999999988 555666654 246666666666
Q ss_pred CCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccc
Q 038705 557 DCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVL 636 (861)
Q Consensus 557 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~ 636 (861)
+|.. +..+| ..+++|++|++++| .++.+|..+..+++|+.|++++|+.+..+
T Consensus 834 ~c~~------------------------L~~~p---~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 834 GCSR------------------------LRTFP---DISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCCc------------------------ccccc---ccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 6643 33333 23347888999887 56778888888999999999999888888
Q ss_pred cccccCCCCCcEEeeccCCCceecC
Q 038705 637 PDGLLKLNHLQEIFISHCPNLISFP 661 (861)
Q Consensus 637 ~~~~~~l~~L~~L~L~~~~~~~~~~ 661 (861)
|..+..+++|+.+++++|..+..++
T Consensus 886 ~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CcccccccCCCeeecCCCccccccc
Confidence 8888889999999999997776543
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=5.9e-33 Score=271.01 Aligned_cols=477 Identities=22% Similarity=0.249 Sum_probs=308.7
Q ss_pred ccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhcc
Q 038705 86 DAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKL 165 (861)
Q Consensus 86 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L 165 (861)
...-|..|++..++ ...+-+++..+..|.||++++|.+.++|.+++.+..++.|+.++|++.++|+.++.+
T Consensus 43 ~qv~l~~lils~N~---------l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~ 113 (565)
T KOG0472|consen 43 EQVDLQKLILSHND---------LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSL 113 (565)
T ss_pred hhcchhhhhhccCc---------hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhh
Confidence 44455666665433 344555588888899999999999999999999999999999999999999999999
Q ss_pred ccccEEecCCccchhhchhhhhhccccceeecCCCcccccCccccccccccccccceEecccCCCCccccccccccccee
Q 038705 166 WNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTL 245 (861)
Q Consensus 166 ~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l 245 (861)
..|+.|+.++| ...++|++++.+..|+.++..+|+ +...|.+++.+.+|..|.+..+..
T Consensus 114 ~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l------------------- 172 (565)
T KOG0472|consen 114 ISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL------------------- 172 (565)
T ss_pred hhhhhhhcccc-ceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccch-------------------
Confidence 99999999887 577788889999999999888888 777888888888887774432210
Q ss_pred eecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCCCCCC
Q 038705 246 DISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWMGDSS 325 (861)
Q Consensus 246 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 325 (861)
.... .. ...++.|++++...|....+|..++.
T Consensus 173 -----~~l~-------~~----------------------------------~i~m~~L~~ld~~~N~L~tlP~~lg~-- 204 (565)
T KOG0472|consen 173 -----KALP-------EN----------------------------------HIAMKRLKHLDCNSNLLETLPPELGG-- 204 (565)
T ss_pred -----hhCC-------HH----------------------------------HHHHHHHHhcccchhhhhcCChhhcc--
Confidence 0000 00 01124555555556666667776643
Q ss_pred cCCeeEEEEeCCCCCCCCCCCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcc
Q 038705 326 FANLVLLRFEGCHRCTSLPSVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEV 405 (861)
Q Consensus 326 ~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 405 (861)
+.+|+.|++..|++. .+|.|+++..|++|++..| .++.++.+... .
T Consensus 205 l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N-~i~~lpae~~~------------------------------~-- 250 (565)
T KOG0472|consen 205 LESLELLYLRRNKIR-FLPEFPGCSLLKELHVGEN-QIEMLPAEHLK------------------------------H-- 250 (565)
T ss_pred hhhhHHHHhhhcccc-cCCCCCccHHHHHHHhccc-HHHhhHHHHhc------------------------------c--
Confidence 777777888777753 3567777888888887554 33333322221 1
Q ss_pred cccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhh
Q 038705 406 NVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIA 485 (861)
Q Consensus 406 ~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (861)
++++..|++++ |+++ .+|..+..|+
T Consensus 251 --L~~l~vLDLRd-Nklk-e~Pde~clLr--------------------------------------------------- 275 (565)
T KOG0472|consen 251 --LNSLLVLDLRD-NKLK-EVPDEICLLR--------------------------------------------------- 275 (565)
T ss_pred --cccceeeeccc-cccc-cCchHHHHhh---------------------------------------------------
Confidence 56666666666 5666 6665433332
Q ss_pred hhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccC-----CCCccEE----Eec
Q 038705 486 EEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRY-----TSLLEYL----YID 556 (861)
Q Consensus 486 ~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-----~~~L~~L----~l~ 556 (861)
+|++||+++|.++ ..|..++++ +|+.|.+.||. +..+.....+. +..|+.- -++
T Consensus 276 -------------sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP--lrTiRr~ii~~gT~~vLKyLrs~~~~dglS 338 (565)
T KOG0472|consen 276 -------------SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP--LRTIRREIISKGTQEVLKYLRSKIKDDGLS 338 (565)
T ss_pred -------------hhhhhcccCCccc-cCCcccccc-eeeehhhcCCc--hHHHHHHHHcccHHHHHHHHHHhhccCCCC
Confidence 4444444444443 233344444 45555555541 11111111000 0011110 000
Q ss_pred CCC--------CccccCCCCCCCCCccEEEEecCCCcccccccC-CC--cccCcEEeeccccCcchhhhhccCCCCccEE
Q 038705 557 DCA--------SLTSLLPKNELPATLEHLHVKSCGNLAFLSLVG-NL--PKALKYLSVDHCLKLKSLAERLDNNSSLEAV 625 (861)
Q Consensus 557 ~~~--------~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~--~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 625 (861)
.-. .....++......+.+.|++++ .+++.+|... .. ..-....++++| .+..+|..+..+..+.+.
T Consensus 339 ~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 339 QSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTD 416 (565)
T ss_pred CCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHH
Confidence 000 0000011112234455555554 2333333210 00 012667888888 567778777766666666
Q ss_pred eeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCC
Q 038705 626 KISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSM 705 (861)
Q Consensus 626 ~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l 705 (861)
-+..++..+.+|..+..+++|..|++++| .+-.+|..++.+..|+.|+++.|+ ...+|..+..++.++.+-.++| .+
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~n-qi 493 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNN-QI 493 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccc-cc
Confidence 66666777888888999999999999998 788899988888899999999986 5667887777777777766666 78
Q ss_pred cccCCC--CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCc
Q 038705 706 VYFPED--GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDM 754 (861)
Q Consensus 706 ~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 754 (861)
+.++.. ..+.+|..||+.+|.+....|. ++++++|++|++.||+.-
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~---LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDLQQIPPI---LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccChHHhhhhhhcceeccCCCchhhCChh---hccccceeEEEecCCccC
Confidence 888877 4478999999999988765555 899999999999999764
No 5
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.95 E-value=3e-28 Score=279.54 Aligned_cols=213 Identities=28% Similarity=0.367 Sum_probs=167.3
Q ss_pred CHHHHHHHHHHHHhCCCCcccC--CCCCceEEchhHHHHHHHHhc-----cceEEecc--cccCccccCCCCceeEEEEE
Q 038705 1 MEDLGRKFFRDLHAKSFFQQSS--CDTSRFVMHHLINDLAQWAAG-----DIYFRMGD--VLEDHKRHRFSENLRHFSYL 71 (861)
Q Consensus 1 ~ed~g~~~~~~L~~~~ll~~~~--~~~~~~~mHdlv~d~a~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~lsl~ 71 (861)
+||+|+.|+.+|++|||++..+ +...+|+|||+|||||.|+|+ ++.+++.. .....+....+..+|+++++
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~ 531 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM 531 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe
Confidence 4799999999999999999876 567899999999999999999 45444432 12223334456789999999
Q ss_pred ecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhc-cCCCCcccEEEccCcc-ccccCcccCCCCccceee
Q 038705 72 RGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYM-LFKLQRLRVLSLRGYS-IFHVPSSIGDLKHLQYLD 149 (861)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~-i~~lp~~~~~L~~L~~L~ 149 (861)
++.+..+ ..-.++++|+||.+.++.. -...++.. |..|+.||||||++|. +..+|++|+.|.+||||+
T Consensus 532 ~~~~~~~---~~~~~~~~L~tLll~~n~~-------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 532 NNKIEHI---AGSSENPKLRTLLLQRNSD-------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred ccchhhc---cCCCCCCccceEEEeecch-------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 9976543 3345788999999977541 13456666 9999999999999887 889999999999999999
Q ss_pred ccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCccccccccccccccceEe
Q 038705 150 LSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVV 224 (861)
Q Consensus 150 Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 224 (861)
++++.|..+|.++++|+.|.+|++..+.....+|..+..|.+||+|.+.... ...-...++.+.+|++|.....
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhhee
Confidence 9999999999999999999999999987777777777889999999998765 1211223455555555544443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1.4e-30 Score=254.40 Aligned_cols=263 Identities=22% Similarity=0.196 Sum_probs=195.4
Q ss_pred ceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcccCCCC
Q 038705 64 NLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLK 143 (861)
Q Consensus 64 ~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~ 143 (861)
....+.+.+|.++.. .++..++..|.+|.++++. ..+.|+.++.+..++.|+.++|+++.+|+.++.+.
T Consensus 46 ~l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~---------l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~ 114 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVL--REDLKNLACLTVLNVHDNK---------LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLI 114 (565)
T ss_pred chhhhhhccCchhhc--cHhhhcccceeEEEeccch---------hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhh
Confidence 355667777765533 2455677777788776644 46778888888899999999999999999999999
Q ss_pred ccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCccccccccccccccceE
Q 038705 144 HLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFV 223 (861)
Q Consensus 144 ~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 223 (861)
.|+.|+.++|.+.++|++|+.+..|+.|+..+| .+..+|++++.+.+|..|++.+|. ....|+..-+|+.|++|+...
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch
Confidence 999999999999999999999999999988887 477788888888888888888888 666676665688888887655
Q ss_pred ecccC-CCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcccCCCC
Q 038705 224 VGKDV-GSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHR 302 (861)
Q Consensus 224 ~~~~~-~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (861)
+.-.. +..++.+..+..|. +.-+.+..+. .|.++..|++++.+.|.+ .....+....++
T Consensus 193 N~L~tlP~~lg~l~~L~~Ly--L~~Nki~~lP--------ef~gcs~L~Elh~g~N~i----------~~lpae~~~~L~ 252 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLY--LRRNKIRFLP--------EFPGCSLLKELHVGENQI----------EMLPAEHLKHLN 252 (565)
T ss_pred hhhhcCChhhcchhhhHHHH--hhhcccccCC--------CCCccHHHHHHHhcccHH----------HhhHHHHhcccc
Confidence 54322 33444444333221 2222222222 366777788888766442 222234456789
Q ss_pred CccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeeeccccc
Q 038705 303 NLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFIIEMTS 362 (861)
Q Consensus 303 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 362 (861)
++..|++..|...++|..+. .+.+|++|++++|.+.+..+.++.+ .|+.|.+.+|+.
T Consensus 253 ~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 253 SLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred cceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 99999999999999998774 4889999999999998877799999 999999999974
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2.9e-28 Score=249.15 Aligned_cols=365 Identities=21% Similarity=0.220 Sum_probs=221.9
Q ss_pred cccEEEccCcccccc-CcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccceeecCC
Q 038705 121 RLRVLSLRGYSIFHV-PSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSN 199 (861)
Q Consensus 121 ~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~ 199 (861)
.-+.||+++|.++.+ +..|.++++|+.+++..|.++.+|...+...+|+.|+|.+|.+...-.+++..++.||.||++.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 356799999999887 6778999999999999999999998888888899999999866666667788899999999999
Q ss_pred CcccccCccc-cccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeec
Q 038705 200 VKALEEMPKG-IGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWT 278 (861)
Q Consensus 200 ~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (861)
|. +..+|.. +..-
T Consensus 159 N~-is~i~~~sfp~~----------------------------------------------------------------- 172 (873)
T KOG4194|consen 159 NL-ISEIPKPSFPAK----------------------------------------------------------------- 172 (873)
T ss_pred ch-hhcccCCCCCCC-----------------------------------------------------------------
Confidence 87 4444421 2222
Q ss_pred cCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeee
Q 038705 279 SSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFI 357 (861)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l 357 (861)
.++++|++++|.++.+...-. ..+.+|..|.|+.|++....+ .|..+|+|+.|++
T Consensus 173 -----------------------~ni~~L~La~N~It~l~~~~F-~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 173 -----------------------VNIKKLNLASNRITTLETGHF-DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred -----------------------CCceEEeeccccccccccccc-cccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 233444444444333322211 234455556666555544333 4555666666666
Q ss_pred ccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCC-CCCCCcceE
Q 038705 358 IEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLP-ECLSSLERL 436 (861)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~~l~~L~~L 436 (861)
..|..-...+..|.| +++|+.|.+.. +++.......|.. +.++++|+++. |++. .+- .+
T Consensus 229 nrN~irive~ltFqg------L~Sl~nlklqr-N~I~kL~DG~Fy~----l~kme~l~L~~-N~l~-~vn~g~------- 288 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQG------LPSLQNLKLQR-NDISKLDDGAFYG----LEKMEHLNLET-NRLQ-AVNEGW------- 288 (873)
T ss_pred cccceeeehhhhhcC------chhhhhhhhhh-cCcccccCcceee----ecccceeeccc-chhh-hhhccc-------
Confidence 554322222333433 56666666655 4555555555555 66777777766 5554 221 11
Q ss_pred EEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchh
Q 038705 437 VVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQ 516 (861)
Q Consensus 437 ~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~ 516 (861)
+.++..|+.|+++.|...... ...|.+. ++|++|+|++|.+....+.
T Consensus 289 -----------lfgLt~L~~L~lS~NaI~rih----------~d~Wsft------------qkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 289 -----------LFGLTSLEQLDLSYNAIQRIH----------IDSWSFT------------QKLKELDLSSNRITRLDEG 335 (873)
T ss_pred -----------ccccchhhhhccchhhhheee----------cchhhhc------------ccceeEeccccccccCChh
Confidence 222333344444443321110 0112211 4788888888888877777
Q ss_pred hhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcc
Q 038705 517 ALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPK 596 (861)
Q Consensus 517 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 596 (861)
.|..+..|+.|.+++| .+..+.+..|..+.+|++|++++|. ++.|-.=...++.| +|
T Consensus 336 sf~~L~~Le~LnLs~N--si~~l~e~af~~lssL~~LdLr~N~-------------------ls~~IEDaa~~f~g-l~- 392 (873)
T KOG4194|consen 336 SFRVLSQLEELNLSHN--SIDHLAEGAFVGLSSLHKLDLRSNE-------------------LSWCIEDAAVAFNG-LP- 392 (873)
T ss_pred HHHHHHHhhhhccccc--chHHHHhhHHHHhhhhhhhcCcCCe-------------------EEEEEecchhhhcc-ch-
Confidence 8888888888888888 6677777777778888888888774 11111111122222 33
Q ss_pred cCcEEeeccccCcchhhh-hccCCCCccEEeeccccCcccccccccCCCCCcEEeecc
Q 038705 597 ALKYLSVDHCLKLKSLAE-RLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISH 653 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 653 (861)
+|+.|++.+| .++.+|. .+.++++||+|+|.+|.+...-|..|..+ .|++|.+..
T Consensus 393 ~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 393 SLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 5777777776 4444443 55666666666666666666666666666 666666554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=6.2e-28 Score=260.37 Aligned_cols=465 Identities=23% Similarity=0.207 Sum_probs=271.2
Q ss_pred cCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhcccccee
Q 038705 116 LFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHL 195 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L 195 (861)
..+--+|++||+++|.++.+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|.|.+| ....+|.++..+++|+.|
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYL 119 (1081)
T ss_pred hhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccccc
Confidence 4444459999999999999999999999999999999999999999999999999999986 789999999999999999
Q ss_pred ecCCCcccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhhe
Q 038705 196 KNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLL 275 (861)
Q Consensus 196 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 275 (861)
+++.|. .+.+|.-+..++.+..+...++... .. +.. ..++.+++
T Consensus 120 dlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~-----~~-----------------------------lg~-~~ik~~~l 163 (1081)
T KOG0618|consen 120 DLSFNH-FGPIPLVIEVLTAEEELAASNNEKI-----QR-----------------------------LGQ-TSIKKLDL 163 (1081)
T ss_pred ccchhc-cCCCchhHHhhhHHHHHhhhcchhh-----hh-----------------------------hcc-ccchhhhh
Confidence 999999 7788888887777776644333100 00 000 00222222
Q ss_pred eeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCCCCCCcCCee-EEEEeCCCCCCCCCCCCCCCCcce
Q 038705 276 EWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWMGDSSFANLV-LLRFEGCHRCTSLPSVGQLPLLKH 354 (861)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~-~L~L~~~~~~~~~~~l~~l~~L~~ 354 (861)
..|.. ...++.. ..+++ .|+|++|.+. .-.+..+++|+.
T Consensus 164 ~~n~l---------------------------------~~~~~~~-----i~~l~~~ldLr~N~~~--~~dls~~~~l~~ 203 (1081)
T KOG0618|consen 164 RLNVL---------------------------------GGSFLID-----IYNLTHQLDLRYNEME--VLDLSNLANLEV 203 (1081)
T ss_pred hhhhc---------------------------------ccchhcc-----hhhhheeeecccchhh--hhhhhhccchhh
Confidence 22111 0111111 11122 2445444433 122333444444
Q ss_pred eeeccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcc
Q 038705 355 LFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLE 434 (861)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~ 434 (861)
|....+...... ..-++|+.|+...++ +........ ..+|+.++++. ++++ .+|.|+.
T Consensus 204 l~c~rn~ls~l~----------~~g~~l~~L~a~~n~-l~~~~~~p~------p~nl~~~dis~-n~l~-~lp~wi~--- 261 (1081)
T KOG0618|consen 204 LHCERNQLSELE----------ISGPSLTALYADHNP-LTTLDVHPV------PLNLQYLDISH-NNLS-NLPEWIG--- 261 (1081)
T ss_pred hhhhhcccceEE----------ecCcchheeeeccCc-ceeeccccc------cccceeeecch-hhhh-cchHHHH---
Confidence 444333211111 012344444444422 111111111 33455555555 4444 4443222
Q ss_pred eEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccc
Q 038705 435 RLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKL 514 (861)
Q Consensus 435 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~ 514 (861)
.+++|+.+...++...... ..+..+ .+|++|.+..|.+. .+
T Consensus 262 ---------------~~~nle~l~~n~N~l~~lp----------~ri~~~-------------~~L~~l~~~~nel~-yi 302 (1081)
T KOG0618|consen 262 ---------------ACANLEALNANHNRLVALP----------LRISRI-------------TSLVSLSAAYNELE-YI 302 (1081)
T ss_pred ---------------hcccceEecccchhHHhhH----------HHHhhh-------------hhHHHHHhhhhhhh-hC
Confidence 2222222222222210000 000000 25555555555543 34
Q ss_pred hhhhhccccccEEEEecccccccccccccccCCCC-ccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccc-cC
Q 038705 515 PQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSL-LEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSL-VG 592 (861)
Q Consensus 515 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~ 592 (861)
|....++++|++|++..| .+..+|...+..... |+.|..+.+ .+..+|. .+
T Consensus 303 p~~le~~~sL~tLdL~~N--~L~~lp~~~l~v~~~~l~~ln~s~n-------------------------~l~~lp~~~e 355 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSN--NLPSLPDNFLAVLNASLNTLNVSSN-------------------------KLSTLPSYEE 355 (1081)
T ss_pred CCcccccceeeeeeehhc--cccccchHHHhhhhHHHHHHhhhhc-------------------------cccccccccc
Confidence 445555666666666666 444455433222222 333333333 1111211 11
Q ss_pred CCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccE
Q 038705 593 NLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTK 672 (861)
Q Consensus 593 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 672 (861)
.....|+.|.+.+|...+...+.+.++.+|+.|+|++|.+.......+.+++.|++|+|++| .++.+|.....++.|++
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHT 434 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHH
Confidence 22236888888888877777777888889999999988755444456777888899999998 67788888888888888
Q ss_pred EEeccccCcccccccCCCCCccCEEeecCCCCCcccCC-CCCC-CCccEEEecCccCcccccccccCCcCCCcCeEEeec
Q 038705 673 LWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPE-DGFP-TNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHG 750 (861)
Q Consensus 673 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~-~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (861)
|...+|. +..+| .+..+++|+.+|++.| .++.+.. ...+ ++|+.||+++|..+..-. ..+..+.++...++.-
T Consensus 435 L~ahsN~-l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~--~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 435 LRAHSNQ-LLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVFDH--KTLKVLKSLSQMDITL 509 (1081)
T ss_pred HhhcCCc-eeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccccch--hhhHHhhhhhheeccc
Confidence 8888877 55666 6788888999999888 4544332 2344 788888888887533211 1155555565555554
Q ss_pred C
Q 038705 751 C 751 (861)
Q Consensus 751 ~ 751 (861)
+
T Consensus 510 ~ 510 (1081)
T KOG0618|consen 510 N 510 (1081)
T ss_pred C
Confidence 4
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.6e-26 Score=234.96 Aligned_cols=372 Identities=15% Similarity=0.140 Sum_probs=191.2
Q ss_pred CCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEE
Q 038705 379 FPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLE 458 (861)
Q Consensus 379 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~ 458 (861)
++.-+.|++++ +++..|....|.. +|+|+++++.. |.++ .+|... ....+++.|+
T Consensus 77 p~~t~~Ldlsn-Nkl~~id~~~f~n----l~nLq~v~l~~-N~Lt-~IP~f~------------------~~sghl~~L~ 131 (873)
T KOG4194|consen 77 PSQTQTLDLSN-NKLSHIDFEFFYN----LPNLQEVNLNK-NELT-RIPRFG------------------HESGHLEKLD 131 (873)
T ss_pred ccceeeeeccc-cccccCcHHHHhc----CCcceeeeecc-chhh-hccccc------------------ccccceeEEe
Confidence 34556677776 6777777766666 88888888888 6776 777421 1112233344
Q ss_pred EccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEecccccccc
Q 038705 459 IGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEES 538 (861)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 538 (861)
+.+|...... .+++..+ +.|++|||+.|.+...-...|..-.++++|++++| .++.
T Consensus 132 L~~N~I~sv~---------------------se~L~~l-~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N--~It~ 187 (873)
T KOG4194|consen 132 LRHNLISSVT---------------------SEELSAL-PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN--RITT 187 (873)
T ss_pred eecccccccc---------------------HHHHHhH-hhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc--cccc
Confidence 4333322110 0111222 36777777777776554445555567777777777 5555
Q ss_pred cccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchh-hhhcc
Q 038705 539 IQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSL-AERLD 617 (861)
Q Consensus 539 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~ 617 (861)
+....|..+.+|..|.+++| .++.+.+.... .+| .|+.|++..|+ ++.+ .-.|.
T Consensus 188 l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk----------------------~L~-~L~~LdLnrN~-irive~ltFq 242 (873)
T KOG4194|consen 188 LETGHFDSLNSLLTLKLSRN-RITTLPQRSFK----------------------RLP-KLESLDLNRNR-IRIVEGLTFQ 242 (873)
T ss_pred cccccccccchheeeecccC-cccccCHHHhh----------------------hcc-hhhhhhccccc-eeeehhhhhc
Confidence 66666666667777777776 33331211111 122 35555555552 2222 23444
Q ss_pred CCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEE
Q 038705 618 NNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQEL 697 (861)
Q Consensus 618 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 697 (861)
++++|+.|.+..|.+...-...|..+.++++|+|..|+....--.+.+.+++|+.|+++.|.+...-++++..+++|++|
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence 55555555555555544444445555555555555553333333344455555555555555444444555555555555
Q ss_pred eecCCCCCcccCCCCC--CCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEe
Q 038705 698 EIGDLPSMVYFPEDGF--PTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEI 775 (861)
Q Consensus 698 ~l~~n~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 775 (861)
++++| .++.+++..+ +..|++|.+++|.+...-... |..+.+|++||+++|.....|-.......-+++|++|.+
T Consensus 323 dLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a--f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 323 DLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA--FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred ecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhH--HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 55555 4555554433 455555555555543322211 455555555555555443333222111112345555555
Q ss_pred ccCCCCcccccCC-CCCCCCCEEeccCCCCcccCCCCCC-ccccceeeccCCcchH
Q 038705 776 VRFSNLEYLSSVG-ESLPSLECLILDDCPKLRYFPDKGL-PPSLLQLHISNCPLIE 829 (861)
Q Consensus 776 ~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~-~~sL~~L~l~~c~~l~ 829 (861)
.+. +++.++... ..++.|+.|++.+++ +.++....+ +-.|++|.+..-..++
T Consensus 400 ~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 400 TGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVMNSSSFLC 453 (873)
T ss_pred cCc-eeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhhcccceEE
Confidence 442 344444333 666777777777764 333332222 3356666665444443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2e-27 Score=244.46 Aligned_cols=384 Identities=20% Similarity=0.292 Sum_probs=267.2
Q ss_pred CCCcccEEEccCcccc--ccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhcccccee
Q 038705 118 KLQRLRVLSLRGYSIF--HVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHL 195 (861)
Q Consensus 118 ~l~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L 195 (861)
-++..|-.|+++|.++ .+|.+...+++++.|.|..+++..+|+.++.|.+|++|.+++|+ +..+-.++..|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHH
Confidence 3556788889999887 56999999999999999999999999999999999999999985 55555678888899999
Q ss_pred ecCCCcc-cccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhh
Q 038705 196 KNSNVKA-LEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLL 274 (861)
Q Consensus 196 ~l~~~~~-~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 274 (861)
.+.+|++ ...+|.+|-+|..|..|+++.+. +..
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNq------------------------L~E---------------------- 117 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ------------------------LRE---------------------- 117 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhh------------------------hhh----------------------
Confidence 9988874 34688888888888877654432 111
Q ss_pred eeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcce
Q 038705 275 LEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKH 354 (861)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~ 354 (861)
++..+..-+++-.|++++|.+.++|..+. ..++.|-.|+|++|++....|....+..|+.
T Consensus 118 -------------------vP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 118 -------------------VPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred -------------------cchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 11112233566677778888888887654 2466677788888877665567777888888
Q ss_pred eeeccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcc
Q 038705 355 LFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLE 434 (861)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~ 434 (861)
|.+++|+... ..+.. ... +.+|+.|.+++.+.-...+|..+-.|
T Consensus 178 L~Ls~NPL~h--------------------fQLrQ-----------LPs----mtsL~vLhms~TqRTl~N~Ptsld~l- 221 (1255)
T KOG0444|consen 178 LKLSNNPLNH--------------------FQLRQ-----------LPS----MTSLSVLHMSNTQRTLDNIPTSLDDL- 221 (1255)
T ss_pred hhcCCChhhH--------------------HHHhc-----------Ccc----chhhhhhhcccccchhhcCCCchhhh-
Confidence 8887775211 11111 111 55666666666433222444322111
Q ss_pred eEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccc
Q 038705 435 RLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKL 514 (861)
Q Consensus 435 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~ 514 (861)
.+|..+|++.|.+. ..
T Consensus 222 ---------------------------------------------------------------~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 222 ---------------------------------------------------------------HNLRDVDLSENNLP-IV 237 (1255)
T ss_pred ---------------------------------------------------------------hhhhhccccccCCC-cc
Confidence 26667777766643 66
Q ss_pred hhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCC
Q 038705 515 PQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNL 594 (861)
Q Consensus 515 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 594 (861)
|..+-.+++|+.|++++| .++.+... .+.+
T Consensus 238 Pecly~l~~LrrLNLS~N--~iteL~~~------------------------------------------------~~~W 267 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGN--KITELNMT------------------------------------------------EGEW 267 (1255)
T ss_pred hHHHhhhhhhheeccCcC--ceeeeecc------------------------------------------------HHHH
Confidence 777777777888888777 22211110 1122
Q ss_pred cccCcEEeeccccCcchhhhhccCCCCccEEeeccccCc-ccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEE
Q 038705 595 PKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENL-IVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKL 673 (861)
Q Consensus 595 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 673 (861)
. +|+.|++++| .++.+|..++.+++|+.|...+|... .-+|+.++++..|+.+...+| .++-+|+++..|+.|+.|
T Consensus 268 ~-~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 268 E-NLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKL 344 (1255)
T ss_pred h-hhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHh
Confidence 2 5777888887 56778888888888888888887753 457888888999999888888 788889888889999999
Q ss_pred EeccccCcccccccCCCCCccCEEeecCCCCCcccCCC-CCCCCccEEEe
Q 038705 674 WIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED-GFPTNLHSLEI 722 (861)
Q Consensus 674 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~-~~~~~L~~L~l 722 (861)
.++.|+ +-.+|++++-++.|+.|++.+||.+...|.- ..-++|+.-+|
T Consensus 345 ~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 345 KLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred cccccc-eeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 998877 5667888888999999999999887765543 11234554444
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=3.3e-27 Score=254.81 Aligned_cols=471 Identities=21% Similarity=0.210 Sum_probs=296.6
Q ss_pred hhhhhccCCCCcccEEEccCccccccCccc-CCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhh
Q 038705 110 HSVLYMLFKLQRLRVLSLRGYSIFHVPSSI-GDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGS 188 (861)
Q Consensus 110 ~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~ 188 (861)
..+|..+..-..+..|+++.|.+-..|-.+ .+-.+|+.||+++|.+...|..|..+.+|+.|+++.| .+...|.++++
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~ 89 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSN 89 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhh
Confidence 344555444455788888888766655433 4555588888888888888888888888888888876 67778877888
Q ss_pred ccccceeecCCCcccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhccc
Q 038705 189 LIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKR 268 (861)
Q Consensus 189 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~ 268 (861)
+.+|++|.+.+|. ....|.++..+++|+.|+++.+. +...+
T Consensus 90 ~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~------------------------f~~~P-------------- 130 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNH------------------------FGPIP-------------- 130 (1081)
T ss_pred hhcchhheeccch-hhcCchhHHhhhcccccccchhc------------------------cCCCc--------------
Confidence 8888888888777 66777777777777776543321 10000
Q ss_pred CcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecC-CCCCCcCCCCCCcCCeeEEEEeCCCCCCCCC-CC
Q 038705 269 NLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYG-GTTFPTWMGDSSFANLVLLRFEGCHRCTSLP-SV 346 (861)
Q Consensus 269 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l 346 (861)
..+..+..++.+..++|. ..+++. ..++.+++..+.+.+.++ ..
T Consensus 131 ---------------------------l~i~~lt~~~~~~~s~N~~~~~lg~-------~~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 131 ---------------------------LVIEVLTAEEELAASNNEKIQRLGQ-------TSIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred ---------------------------hhHHhhhHHHHHhhhcchhhhhhcc-------ccchhhhhhhhhcccchhcch
Confidence 001111223333334431 111111 125566666665555444 33
Q ss_pred CCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCC
Q 038705 347 GQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRL 426 (861)
Q Consensus 347 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 426 (861)
..+.. .|++.+|... .... ..+++|+.+.... +.+.
T Consensus 177 ~~l~~--~ldLr~N~~~-~~dl--------s~~~~l~~l~c~r------------------------------n~ls--- 212 (1081)
T KOG0618|consen 177 YNLTH--QLDLRYNEME-VLDL--------SNLANLEVLHCER------------------------------NQLS--- 212 (1081)
T ss_pred hhhhe--eeecccchhh-hhhh--------hhccchhhhhhhh------------------------------cccc---
Confidence 33333 4566555322 1100 1133333333322 1111
Q ss_pred CCCCCCcceEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEee
Q 038705 427 PECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELS 506 (861)
Q Consensus 427 p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~ 506 (861)
.+++.+ ++++.|+..+|+..+. .....|.+|++++++
T Consensus 213 --------~l~~~g-----------~~l~~L~a~~n~l~~~------------------------~~~p~p~nl~~~dis 249 (1081)
T KOG0618|consen 213 --------ELEISG-----------PSLTALYADHNPLTTL------------------------DVHPVPLNLQYLDIS 249 (1081)
T ss_pred --------eEEecC-----------cchheeeeccCcceee------------------------ccccccccceeeecc
Confidence 111111 2333333333332210 001122478888888
Q ss_pred cccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcc
Q 038705 507 QCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLA 586 (861)
Q Consensus 507 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 586 (861)
.+.+.. +|.++..+.+|+.++..+| .+..+|... ....+|+.|.+..| .++.+.+......+|+.|++... ++.
T Consensus 250 ~n~l~~-lp~wi~~~~nle~l~~n~N--~l~~lp~ri-~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~ 323 (1081)
T KOG0618|consen 250 HNNLSN-LPEWIGACANLEALNANHN--RLVALPLRI-SRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLP 323 (1081)
T ss_pred hhhhhc-chHHHHhcccceEecccch--hHHhhHHHH-hhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc-ccc
Confidence 887764 4578888888888888888 345555443 44567788888777 56665666666777888887753 444
Q ss_pred ccccc--CCCcccCcEEeeccccCcchhhh-hccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCC
Q 038705 587 FLSLV--GNLPKALKYLSVDHCLKLKSLAE-RLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDG 663 (861)
Q Consensus 587 ~l~~~--~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 663 (861)
++|.. ...+..++.|+.+.+ .+...|. .-..++.|+.|.+.+|.+....-..+.++.+|+.|+|++| .+.++|..
T Consensus 324 ~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas 401 (1081)
T KOG0618|consen 324 SLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPAS 401 (1081)
T ss_pred ccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHH
Confidence 44421 111123666666666 3444442 2236789999999999998877777889999999999999 67778874
Q ss_pred C-CCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccCCcCCC
Q 038705 664 G-FLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTS 742 (861)
Q Consensus 664 ~-~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 742 (861)
. .+++.|++|+++||. +..+|..+..+..|+.|...+| .+..+|....++.|+++|++.|++.....+. ....++
T Consensus 402 ~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~--~~p~p~ 477 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNNLSEVTLPE--ALPSPN 477 (1081)
T ss_pred HHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecccchhhhhhhhh--hCCCcc
Confidence 4 468899999999988 7888899999999999999888 7888897788999999999999887755443 233389
Q ss_pred cCeEEeecCCC
Q 038705 743 LRRLSIHGCQD 753 (861)
Q Consensus 743 L~~L~l~~~~~ 753 (861)
|++||++||..
T Consensus 478 LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 478 LKYLDLSGNTR 488 (1081)
T ss_pred cceeeccCCcc
Confidence 99999999964
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.9e-25 Score=230.06 Aligned_cols=112 Identities=25% Similarity=0.302 Sum_probs=78.8
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+|++|+++.|+++ .+|.++..+++|+.|.+.+|+.....+|+.+ +.+.
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI-GKL~------------------------------ 316 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGI-GKLI------------------------------ 316 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccch-hhhh------------------------------
Confidence 7888888888765 6788888999999999988866666666542 1122
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCce
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLI 658 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 658 (861)
+|+++..++| .++.+|++++.+.+|+.|.|++|..+ .+|..+.-++-|+.||++.|+++.
T Consensus 317 ------------------~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 317 ------------------QLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ------------------hhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 3555555555 66777777777777777777776654 367777777778888888777766
Q ss_pred ecCC
Q 038705 659 SFPD 662 (861)
Q Consensus 659 ~~~~ 662 (861)
--|.
T Consensus 377 MPPK 380 (1255)
T KOG0444|consen 377 MPPK 380 (1255)
T ss_pred CCCC
Confidence 5444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=7e-22 Score=240.87 Aligned_cols=267 Identities=21% Similarity=0.388 Sum_probs=138.9
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+|+.|++++|.....+| .++.+++|+.|++++| .....+|.. +..+++|+.|++++|..++. +|....+++|+.|.
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c-~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~-Lp~~i~l~sL~~L~ 710 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDC-SSLVELPSS-IQYLNKLEDLDMSRCENLEI-LPTGINLKSLYRLN 710 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCC-CCccccchh-hhccCCCCEEeCCCCCCcCc-cCCcCCCCCCCEEe
Confidence 56666666655554444 3555666666666666 334444433 24556666666666655555 33333455666666
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCccc-------ccccccCCCCCcEEee
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIV-------LPDGLLKLNHLQEIFI 651 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~-------~~~~~~~l~~L~~L~L 651 (861)
+++|..+..+| ..+++|++|++++|. ++.+|..+ .+++|+.|.+.++..... .+......++|+.|++
T Consensus 711 Lsgc~~L~~~p---~~~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 711 LSGCSRLKSFP---DISTNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred CCCCCCccccc---cccCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 66665555544 223356666666553 34444433 355555555554332110 0111122345566666
Q ss_pred ccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccc
Q 038705 652 SHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSL 731 (861)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~ 731 (861)
++|+....+|..+..+++|+.|++++|..++.+|..+ ++++|+.|++++|..+..+|. .+++|++|++++|.+.. +
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~i~~-i 861 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTGIEE-V 861 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCCCCcc-C
Confidence 6655555555555555566666666655555555544 455566666666555554443 23455566665555432 3
Q ss_pred cccccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcc
Q 038705 732 IEWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEY 783 (861)
Q Consensus 732 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 783 (861)
|.. +..+++|+.|++++|+.+..++.... .+++|+.+++.+|.+++.
T Consensus 862 P~s--i~~l~~L~~L~L~~C~~L~~l~~~~~---~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 862 PWW--IEKFSNLSFLDMNGCNNLQRVSLNIS---KLKHLETVDFSDCGALTE 908 (1153)
T ss_pred hHH--HhcCCCCCEEECCCCCCcCccCcccc---cccCCCeeecCCCccccc
Confidence 332 55555666666666555555554321 224455555555555443
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=2e-19 Score=176.74 Aligned_cols=116 Identities=27% Similarity=0.235 Sum_probs=101.4
Q ss_pred hhhhhhc-cCCCCcccEEEccCcccccc-CcccCCCCccceeeccC-Ccccccchh-hhccccccEEecCCccchhhchh
Q 038705 109 AHSVLYM-LFKLQRLRVLSLRGYSIFHV-PSSIGDLKHLQYLDLSE-TKIKTLPES-VNKLWNLHTLLLENCHRLKKLCA 184 (861)
Q Consensus 109 ~~~~~~~-~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~-~~i~~lp~~-i~~L~~L~~L~l~~n~~~~~lp~ 184 (861)
...+|+. |+.+++||.|||++|.|+.| |.+|..|..|-.|-+-+ |+|+++|.. |++|..|+.|.+.-|++.-...+
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 4678888 99999999999999999999 99999999998887766 899999976 99999999999999887777788
Q ss_pred hhhhccccceeecCCCcccccCcc-ccccccccccccceEec
Q 038705 185 NMGSLIKLHHLKNSNVKALEEMPK-GIGNLTHLLTLSRFVVG 225 (861)
Q Consensus 185 ~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~ 225 (861)
.+..|++|..|.+.+|. ...++. .+..+..++++.+..+.
T Consensus 159 al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 89999999999999998 666666 58888888888765543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=2.5e-15 Score=169.61 Aligned_cols=261 Identities=25% Similarity=0.246 Sum_probs=140.0
Q ss_pred CCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeeeccccceeEECccccCCcCcCCCCC
Q 038705 302 RNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPS 381 (861)
Q Consensus 302 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 381 (861)
..-..|+++.+....+|..+. ++|+.|++.+|.+.. +|. ..++|++|++++|. +..++. .+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~-LtsLP~---------lp~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQ-LTSLPV---------LPPG 263 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh----cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCc-cCcccC---------cccc
Confidence 345567777777777776542 367777777776554 443 24677777777663 333321 1456
Q ss_pred cceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEcc
Q 038705 382 LETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGG 461 (861)
Q Consensus 382 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~ 461 (861)
|+.|++.. +.+..+.. . +++|+.|++++ |+++ .+|...++|+.|+++++. +.........|+.|.+++
T Consensus 264 L~~L~Ls~-N~L~~Lp~--l------p~~L~~L~Ls~-N~Lt-~LP~~p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~ 331 (788)
T PRK15387 264 LLELSIFS-NPLTHLPA--L------PSGLCKLWIFG-NQLT-SLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAYN 331 (788)
T ss_pred cceeeccC-Cchhhhhh--c------hhhcCEEECcC-Cccc-cccccccccceeECCCCc-cccCCCCccccccccccc
Confidence 67777666 34443321 0 45677777777 4665 566555666666666542 222111223455555554
Q ss_pred CCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEeccccccccccc
Q 038705 462 CKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQS 541 (861)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 541 (861)
|.. ..+|.+|.+|++|++++|.+.. +|.. ..+|+.|++++| .+..+|.
T Consensus 332 N~L--------------------------~~LP~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N--~L~~LP~ 379 (788)
T PRK15387 332 NQL--------------------------TSLPTLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNN--RLTSLPA 379 (788)
T ss_pred Ccc--------------------------ccccccccccceEecCCCccCC-CCCC---Ccccceehhhcc--ccccCcc
Confidence 431 2233344466667776666653 3321 245666666666 3334442
Q ss_pred ccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCC
Q 038705 542 SSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSS 621 (861)
Q Consensus 542 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 621 (861)
.+.+|+.|++++| .++ .+| ..|++|+.|++++|. +..+|.. ..+
T Consensus 380 ----l~~~L~~LdLs~N-~Lt------------------------~LP---~l~s~L~~LdLS~N~-LssIP~l---~~~ 423 (788)
T PRK15387 380 ----LPSGLKELIVSGN-RLT------------------------SLP---VLPSELKELMVSGNR-LTSLPML---PSG 423 (788)
T ss_pred ----cccccceEEecCC-ccc------------------------CCC---CcccCCCEEEccCCc-CCCCCcc---hhh
Confidence 2345666666665 222 222 122356666666663 3344432 234
Q ss_pred ccEEeeccccCcccccccccCCCCCcEEeeccCCCceec
Q 038705 622 LEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISF 660 (861)
Q Consensus 622 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 660 (861)
|+.|++++|.+. .+|..+.++++|+.|++++|+..+..
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 566666665543 45666666666666666666554443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=4.4e-15 Score=167.56 Aligned_cols=141 Identities=24% Similarity=0.249 Sum_probs=92.5
Q ss_pred CcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEE
Q 038705 594 LPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKL 673 (861)
Q Consensus 594 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 673 (861)
+|..|+.|++++| .++.+|.. ..+|+.|++++|.+.+ +|.. .++|+.|++++|. +..+|.. .++|+.|
T Consensus 320 lp~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~L 387 (788)
T PRK15387 320 LPSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKEL 387 (788)
T ss_pred CcccccccccccC-cccccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccc-cccCccc---ccccceE
Confidence 3445777777776 33445531 1467777777776553 4442 3567777787774 4456643 2468888
Q ss_pred EeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCC
Q 038705 674 WIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 674 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 753 (861)
++++|.+. .+|.. .++|+.|++++| .+..+|. .+.+|+.|++++|.+. .+|.. +..+++|+.|++++|+.
T Consensus 388 dLs~N~Lt-~LP~l---~s~L~~LdLS~N-~LssIP~--l~~~L~~L~Ls~NqLt-~LP~s--l~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 388 IVSGNRLT-SLPVL---PSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQLT-RLPES--LIHLSSETTVNLEGNPL 457 (788)
T ss_pred EecCCccc-CCCCc---ccCCCEEEccCC-cCCCCCc--chhhhhhhhhccCccc-ccChH--HhhccCCCeEECCCCCC
Confidence 88887744 45543 256888888888 4666664 3567888888888876 45554 77888888888888876
Q ss_pred ccc
Q 038705 754 MVS 756 (861)
Q Consensus 754 ~~~ 756 (861)
.+.
T Consensus 458 s~~ 460 (788)
T PRK15387 458 SER 460 (788)
T ss_pred Cch
Confidence 544
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=7.3e-17 Score=158.89 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=65.1
Q ss_pred cccEEEccCcccccc-CcccCCCCccceeeccCCccccc-chhhhccccccEEecCCccchhhchhh-hhhccccceeec
Q 038705 121 RLRVLSLRGYSIFHV-PSSIGDLKHLQYLDLSETKIKTL-PESVNKLWNLHTLLLENCHRLKKLCAN-MGSLIKLHHLKN 197 (861)
Q Consensus 121 ~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~l 197 (861)
.-..++|..|.|+.+ |.+|+.+++||.||||+|+|+.| |.+|..|..|-.|-+.+|+.+..+|.. |++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345566777777777 44677777777777777777765 455777777766666664456666643 677777777777
Q ss_pred CCCcccccCc-cccccccccccccceE
Q 038705 198 SNVKALEEMP-KGIGNLTHLLTLSRFV 223 (861)
Q Consensus 198 ~~~~~~~~~p-~~i~~l~~L~~L~~~~ 223 (861)
.-|+ +..++ ..+..|++|..|.+++
T Consensus 148 Nan~-i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 148 NANH-INCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred Chhh-hcchhHHHHHHhhhcchhcccc
Confidence 7666 33333 3355566665554433
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.5e-16 Score=138.09 Aligned_cols=135 Identities=23% Similarity=0.237 Sum_probs=101.0
Q ss_pred hhhhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccc
Q 038705 80 MFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLP 159 (861)
Q Consensus 80 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp 159 (861)
+.+.+.++++...|.+..+. ...+|+.+..+++|++|++++|.|.++|.+++.+++||.|+++-|++..+|
T Consensus 25 ~~~gLf~~s~ITrLtLSHNK---------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lp 95 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNK---------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILP 95 (264)
T ss_pred hcccccchhhhhhhhcccCc---------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCc
Confidence 33444556666666664433 346777788888888888888888888888888888888888888888888
Q ss_pred hhhhccccccEEecCCccch-hhchhhhhhccccceeecCCCcccccCccccccccccccccceEe
Q 038705 160 ESVNKLWNLHTLLLENCHRL-KKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVV 224 (861)
Q Consensus 160 ~~i~~L~~L~~L~l~~n~~~-~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 224 (861)
..||.+..|++||+++|+.. ..+|..|..++.|+.|++++|. ...+|.+++++++||.|.+..+
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccC
Confidence 88888888888888876543 5677788888888888888887 6778888888888887755443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=1.2e-15 Score=132.64 Aligned_cols=149 Identities=21% Similarity=0.279 Sum_probs=113.9
Q ss_pred CceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcccCCC
Q 038705 63 ENLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDL 142 (861)
Q Consensus 63 ~~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L 142 (861)
..++++.+++|.+.. .++.+.++.+|++|.+.++ -..++|..++.+++||.|+++-|++..+|..|+.+
T Consensus 33 s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nn---------qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNN---------QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hhhhhhhcccCceee--cCCcHHHhhhhhhhhcccc---------hhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 567788888876553 3566778888888876543 35677777888888888888888888888888888
Q ss_pred CccceeeccCCccc--ccchhhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCcccccccccccccc
Q 038705 143 KHLQYLDLSETKIK--TLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLS 220 (861)
Q Consensus 143 ~~L~~L~Ls~~~i~--~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 220 (861)
+.|++|||++|++. .+|..|..++.|+.|+++.| ....+|..+++|++||.|.+.+|. .-.+|.+++.+++|++|.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELH 179 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHh
Confidence 88888888888776 67777888888888888886 567778888888888888888887 556788888888888876
Q ss_pred ceEe
Q 038705 221 RFVV 224 (861)
Q Consensus 221 ~~~~ 224 (861)
+..+
T Consensus 180 iqgn 183 (264)
T KOG0617|consen 180 IQGN 183 (264)
T ss_pred cccc
Confidence 5443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.3e-13 Score=157.01 Aligned_cols=83 Identities=22% Similarity=0.377 Sum_probs=67.1
Q ss_pred CcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccceeecCC
Q 038705 120 QRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSN 199 (861)
Q Consensus 120 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~ 199 (861)
.+..+|+++++.++.+|..+. .+|+.|+|++|+|+.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcC
Confidence 357899999999999998775 589999999999999998765 589999999985 557787654 4789999999
Q ss_pred CcccccCcccc
Q 038705 200 VKALEEMPKGI 210 (861)
Q Consensus 200 ~~~~~~~p~~i 210 (861)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 98 45666544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=1.1e-13 Score=157.57 Aligned_cols=230 Identities=21% Similarity=0.308 Sum_probs=159.1
Q ss_pred CCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcc
Q 038705 496 FPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLE 575 (861)
Q Consensus 496 ~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 575 (861)
+|+.++.|++++|.+. .+|..+. ++|+.|++++| .+..+|.. ..++|+.|++++|. ++. +|. ..+.+|+
T Consensus 197 Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N--~LtsLP~~---l~~~L~~L~Ls~N~-L~~-LP~-~l~s~L~ 265 (754)
T PRK15370 197 IPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSN--QLTSIPAT---LPDTIQEMELSINR-ITE-LPE-RLPSALQ 265 (754)
T ss_pred cccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCC--ccccCChh---hhccccEEECcCCc-cCc-CCh-hHhCCCC
Confidence 4468999999999877 4554443 58999999999 45566653 34689999999984 554 332 2346788
Q ss_pred EEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCC
Q 038705 576 HLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCP 655 (861)
Q Consensus 576 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 655 (861)
.|++++ +.+..+|. .+|++|+.|++++| .++.+|..+. ++|+.|++++|.+.. +|..+ .++|+.|++++|.
T Consensus 266 ~L~Ls~-N~L~~LP~--~l~~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~ 336 (754)
T PRK15370 266 SLDLFH-NKISCLPE--NLPEELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENA 336 (754)
T ss_pred EEECcC-CccCcccc--ccCCCCcEEECCCC-ccccCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCc
Confidence 888874 46666652 34557899999888 4556665443 478888888887654 55443 3688888888884
Q ss_pred CceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCccccccc-
Q 038705 656 NLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEW- 734 (861)
Q Consensus 656 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~- 734 (861)
+..+|..+. ++|+.|++++|++ ..+|..+ .++|+.|++++| .+..+|.. ++.+|+.|++++|++.+ +|..
T Consensus 337 -Lt~LP~~l~--~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N~L~~-LP~sl 407 (754)
T PRK15370 337 -LTSLPASLP--PELQVLDVSKNQI-TVLPETL--PPTITTLDVSRN-ALTNLPEN-LPAALQIMQASRNNLVR-LPESL 407 (754)
T ss_pred -cccCChhhc--CcccEEECCCCCC-CcCChhh--cCCcCEEECCCC-cCCCCCHh-HHHHHHHHhhccCCccc-CchhH
Confidence 555776543 6888999988874 4566654 357888999888 56666654 44678888888888763 3321
Q ss_pred -ccCCcCCCcCeEEeecCCCc
Q 038705 735 -EPLNRFTSLRRLSIHGCQDM 754 (861)
Q Consensus 735 -~~~~~l~~L~~L~l~~~~~~ 754 (861)
.....++++..|++.+|+..
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhcCCCccEEEeeCCCcc
Confidence 11344578888888888653
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.39 E-value=1e-12 Score=152.22 Aligned_cols=147 Identities=24% Similarity=0.272 Sum_probs=109.6
Q ss_pred cccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCcc--ccccCcc-cCCCCccceeeccCC-cccccch
Q 038705 85 SDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYS--IFHVPSS-IGDLKHLQYLDLSET-KIKTLPE 160 (861)
Q Consensus 85 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--i~~lp~~-~~~L~~L~~L~Ls~~-~i~~lp~ 160 (861)
.+....|...+..+. ...++..... +.|++|-+.+|. +..++.. |..++.||+|||++| .+.++|+
T Consensus 520 ~~~~~~rr~s~~~~~---------~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNK---------IEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cchhheeEEEEeccc---------hhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 344666777665543 2233333332 369999999996 6677554 688999999999988 7789999
Q ss_pred hhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCccccccccccccccceEec-ccCCCCcccccccc
Q 038705 161 SVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVG-KDVGSGLRTLKLLK 239 (861)
Q Consensus 161 ~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~~~~l~~l~ 239 (861)
.|++|.+||+|+++++ .+..+|.++++|++|.+|++..+.....+|..+..|.+|++|.++... ......+.++.+|+
T Consensus 590 ~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred HHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 9999999999999996 578999999999999999999988666666666779999999876654 22233444444444
Q ss_pred ccc
Q 038705 240 HLQ 242 (861)
Q Consensus 240 ~L~ 242 (861)
.|+
T Consensus 669 ~L~ 671 (889)
T KOG4658|consen 669 HLE 671 (889)
T ss_pred chh
Confidence 444
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=4.7e-12 Score=134.63 Aligned_cols=231 Identities=20% Similarity=0.100 Sum_probs=111.3
Q ss_pred CcccEEEeeccccccc----chhhhhccccccEEEEecccccc-----cccccccccCCCCccEEEecCCCCccccCCCC
Q 038705 498 CSLQYLELSQCRYLVK----LPQALLSLGFLREMEIYGNLIKE-----ESIQSSSTRYTSLLEYLYIDDCASLTSLLPKN 568 (861)
Q Consensus 498 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 568 (861)
++|+.+++++|.+... ++..+...+.+++++++++.... ..++ ..+..+++|++|++++|..-.......
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHHH
Confidence 3689999999987532 45566677889999998883321 0111 122346788888888874221100000
Q ss_pred CCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcc----hhhhhccCC-CCccEEeeccccCcc----ccccc
Q 038705 569 ELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLK----SLAERLDNN-SSLEAVKISYCENLI----VLPDG 639 (861)
Q Consensus 569 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~l-~~L~~L~L~~~~~~~----~~~~~ 639 (861)
..+.. . ++|++|++++|.... .+...+..+ ++|+.|++++|.+.+ .++..
T Consensus 102 ~~l~~-------------------~--~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 102 ESLLR-------------------S--SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred HHHhc-------------------c--CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 00111 0 135555555553321 122233344 555555555555442 22333
Q ss_pred ccCCCCCcEEeeccCCCce----ecCCCCCCcCCccEEEeccccCccc----ccccCCCCCccCEEeecCCCCCcccCCC
Q 038705 640 LLKLNHLQEIFISHCPNLI----SFPDGGFLSSTLTKLWIYECEKLKA----LPNGMHNLTSLQELEIGDLPSMVYFPED 711 (861)
Q Consensus 640 ~~~l~~L~~L~L~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~l~~~~~~ 711 (861)
+..+++|++|++++|.... .++..+..+++|+.|++++|.+... +...+..+++|++|++++|+ +......
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~ 239 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAA 239 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHH
Confidence 4444555566665553331 1111122234566666665554321 22334455566666666653 2210000
Q ss_pred ----C---CCCCccEEEecCccCcc----cccccccCCcCCCcCeEEeecCCC
Q 038705 712 ----G---FPTNLHSLEIRDMKMWK----SLIEWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 712 ----~---~~~~L~~L~l~~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~ 753 (861)
. ..+.|++|++++|.+.. .+... +..+++|+.+++++|+.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~--~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEV--LAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH--HhcCCCccEEECCCCCC
Confidence 0 12456666666665542 11111 34445666666666643
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=3.2e-11 Score=128.21 Aligned_cols=118 Identities=19% Similarity=0.071 Sum_probs=65.1
Q ss_pred hhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccc-------cCcccCCCCccceeeccCCc
Q 038705 82 EVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFH-------VPSSIGDLKHLQYLDLSETK 154 (861)
Q Consensus 82 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-------lp~~~~~L~~L~~L~Ls~~~ 154 (861)
..+..+++|+.|.+.+..- .......++..+...+.|+.|+++++.+.. ++..+..+.+|++|++++|.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l----~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTL----GEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHhhccEEeecCCCC----cHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 3344555666766654320 000012233336666667777777666542 23455566677777777776
Q ss_pred cc-ccchhhhcccc---ccEEecCCccch----hhchhhhhhc-cccceeecCCCccc
Q 038705 155 IK-TLPESVNKLWN---LHTLLLENCHRL----KKLCANMGSL-IKLHHLKNSNVKAL 203 (861)
Q Consensus 155 i~-~lp~~i~~L~~---L~~L~l~~n~~~----~~lp~~~~~L-~~L~~L~l~~~~~~ 203 (861)
+. ..+..+..+.+ |++|++++|... ..+...+..+ ++|+.|++++|.+.
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 65 34444555555 777777776543 1223344555 67777777777643
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=8.7e-10 Score=101.92 Aligned_cols=133 Identities=27% Similarity=0.262 Sum_probs=54.3
Q ss_pred hhhcccCCccEEeecccccCcCCcccchhhhhhccC-CCCcccEEEccCccccccCcccCCCCccceeeccCCcccccch
Q 038705 82 EVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLF-KLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPE 160 (861)
Q Consensus 82 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~ 160 (861)
+.+.+..++|.|.+.++. ....+.+. .+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+.++.
T Consensus 13 ~~~~n~~~~~~L~L~~n~----------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQ----------ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccccccc----------cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 445566678888776643 23334555 5788999999999999884 58889999999999999999876
Q ss_pred hh-hccccccEEecCCccchhhch--hhhhhccccceeecCCCcccccCcc----ccccccccccccceEeccc
Q 038705 161 SV-NKLWNLHTLLLENCHRLKKLC--ANMGSLIKLHHLKNSNVKALEEMPK----GIGNLTHLLTLSRFVVGKD 227 (861)
Q Consensus 161 ~i-~~L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~~~~ 227 (861)
.+ ..+++|++|++++|.+. .+. ..+..+++|++|++.+|.+.. .+. -+..+++|+.|+...+...
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETTS-
T ss_pred chHHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEccHH
Confidence 66 46899999999998543 222 447789999999999998443 332 2678889998887665433
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.90 E-value=1.7e-11 Score=122.74 Aligned_cols=287 Identities=21% Similarity=0.234 Sum_probs=146.1
Q ss_pred cccEEEeecccccccch--hhhhccccccEEEEecccccccc-cccccccCCCCccEEEecCCCCccccCCCCCCCCCcc
Q 038705 499 SLQYLELSQCRYLVKLP--QALLSLGFLREMEIYGNLIKEES-IQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLE 575 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 575 (861)
-|+.|.+++|.-.+.-+ .....++++++|.+.+| ..++. .-..+...++.|+.+.+..|..+++..-..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc-~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~------- 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGC-KKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY------- 210 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcc-eeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH-------
Confidence 57777777776553322 23446677777777777 22222 112222455666666666665555421110
Q ss_pred EEEEecCCCcccccccCCCcccCcEEeeccccCcch--hhhhccCCCCccEEeeccccCccc--ccccccCCCCCcEEee
Q 038705 576 HLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKS--LAERLDNNSSLEAVKISYCENLIV--LPDGLLKLNHLQEIFI 651 (861)
Q Consensus 576 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~L 651 (861)
.....| +|++|++++|+.+.. +.....++..++.+.+.+|...+. +-..-..++-+..+++
T Consensus 211 --------------la~gC~-kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 211 --------------LAEGCR-KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred --------------HHHhhh-hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 011222 455666666554432 222233445555555555543321 1111122444555666
Q ss_pred ccCCCceecCC--CCCCcCCccEEEeccccCcccc--cccCCCCCccCEEeecCCCCCcccCCC---CCCCCccEEEecC
Q 038705 652 SHCPNLISFPD--GGFLSSTLTKLWIYECEKLKAL--PNGMHNLTSLQELEIGDLPSMVYFPED---GFPTNLHSLEIRD 724 (861)
Q Consensus 652 ~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~n~~l~~~~~~---~~~~~L~~L~l~~ 724 (861)
.+|..++.... .-..+..|+.|..++|...+.. ..--.+.++|+.|.+..|..++..... ..++.|+.+++.+
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 66644443221 1123556777777766654332 122256677777777777654443222 3367788888877
Q ss_pred ccCcccccccccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCCCCCCCCCEEeccCCCC
Q 038705 725 MKMWKSLIEWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVGESLPSLECLILDDCPK 804 (861)
Q Consensus 725 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 804 (861)
|....+..-.....+++.||++.+++|..++.-. +..+.........|+.+.+++||.
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~g----------------------i~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEG----------------------IRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhh----------------------hhhhhhccccccccceeeecCCCC
Confidence 7766654322335678888888888886554421 111111223444555566666655
Q ss_pred cccCCC--CCCccccceeeccCCcchHH
Q 038705 805 LRYFPD--KGLPPSLLQLHISNCPLIEE 830 (861)
Q Consensus 805 l~~~~~--~~~~~sL~~L~l~~c~~l~~ 830 (861)
++.-.. ....+.||.+++.+|....+
T Consensus 414 i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 414 ITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred chHHHHHHHhhCcccceeeeechhhhhh
Confidence 554221 22345566666666655544
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.86 E-value=4.3e-11 Score=119.84 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=57.0
Q ss_pred CeeEEEEeCCCCCCCCC---CCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCc
Q 038705 328 NLVLLRFEGCHRCTSLP---SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKE 404 (861)
Q Consensus 328 ~L~~L~L~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 404 (861)
.|+.|.+++|.-.++-+ .....|+++.|.+.+|..+++..-.... ..+++|+.+.+..|..+++........+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 46667777766554433 2345677777777777654443211111 2367788888887777776665544444
Q ss_pred ccccCccceEeccCCCCCcC
Q 038705 405 VNVFPQLRELSLIGCPKLQG 424 (861)
Q Consensus 405 ~~~~~~L~~L~l~~c~~l~~ 424 (861)
+++|++|+++.|+.+++
T Consensus 215 ---C~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 215 ---CRKLKYLNLSWCPQISG 231 (483)
T ss_pred ---hhhHHHhhhccCchhhc
Confidence 88888888888887774
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.9e-09 Score=108.95 Aligned_cols=133 Identities=12% Similarity=0.044 Sum_probs=58.7
Q ss_pred CCCCccEEeeccccCcccc--cccccCCCCCcEEeeccCCCceecCC-CCCCcCCccEEEeccccCccc-ccccCCCCCc
Q 038705 618 NNSSLEAVKISYCENLIVL--PDGLLKLNHLQEIFISHCPNLISFPD-GGFLSSTLTKLWIYECEKLKA-LPNGMHNLTS 693 (861)
Q Consensus 618 ~l~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~ 693 (861)
.+++++.|||++|-+.... -.....+|+|+.|+++.|....-... ....++.|+.|.+++|.+... +-..+..+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 4455555555554333211 12223355555555555532211111 111245555666665554321 1122345556
Q ss_pred cCEEeecCCCCCccc-CCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecC
Q 038705 694 LQELEIGDLPSMVYF-PEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 694 L~~L~l~~n~~l~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 751 (861)
|+.|++.+|..+... .....+..|++|||++|++...-- ....+.++.|+.|+++.|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~-~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ-GYKVGTLPGLNQLNLSST 281 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCccccccc-ccccccccchhhhhcccc
Confidence 666666655322111 111334556666666665554221 111555666666666665
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=1.4e-08 Score=110.95 Aligned_cols=107 Identities=35% Similarity=0.431 Sum_probs=90.9
Q ss_pred cCCCCcccEEEccCccccccCcccCCCC-ccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccce
Q 038705 116 LFKLQRLRVLSLRGYSIFHVPSSIGDLK-HLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHH 194 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~-~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~ 194 (861)
...++.++.|++.+|.++.+|.....+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 5566789999999999999988888885 999999999999999988999999999999997 57777777778999999
Q ss_pred eecCCCcccccCccccccccccccccceEe
Q 038705 195 LKNSNVKALEEMPKGIGNLTHLLTLSRFVV 224 (861)
Q Consensus 195 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 224 (861)
|++++|. +..+|..++.+..|++|.+..+
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCC
Confidence 9999998 7788877777777887765544
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=9.4e-10 Score=114.55 Aligned_cols=106 Identities=30% Similarity=0.462 Sum_probs=62.1
Q ss_pred hhhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhcc
Q 038705 111 SVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLI 190 (861)
Q Consensus 111 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~ 190 (861)
.+|..+..+..|..+.|..|.+..+|.++++|..|.||||+.|++..+|..+..| -|++|-+++| .++.+|+.++.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNN-kl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNN-KLTSLPEEIGLLP 166 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecC-ccccCCcccccch
Confidence 4444455555566666666666666666666666666666666666666655554 3566666554 4555666666556
Q ss_pred ccceeecCCCcccccCccccccccccccc
Q 038705 191 KLHHLKNSNVKALEEMPKGIGNLTHLLTL 219 (861)
Q Consensus 191 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 219 (861)
.|.+||.+.|. +..+|..++.+.+|+.|
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 66666666665 44555555555555555
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7.8e-09 Score=104.58 Aligned_cols=207 Identities=20% Similarity=0.109 Sum_probs=113.6
Q ss_pred cccEEEeecccccccch-hhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 499 SLQYLELSQCRYLVKLP-QALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
+|+.+.|.++....... .....+++++.|++++|-+.--..-..+...+|+|+.|.++.|. +...+...
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~--------- 191 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSN--------- 191 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCcccc---------
Confidence 67777777776543221 35556788888888877211111112233567777777777773 22101000
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCc-chhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCC
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKL-KSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPN 656 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 656 (861)
....++ .|+.|.++.|... ..+...+..+|+|+.|++.+|.....-.....-+..|++|+|++|+.
T Consensus 192 ------------~~~~l~-~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 192 ------------TTLLLS-HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred ------------chhhhh-hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 011222 5777777777544 23333444677777777777754433333344466777777777744
Q ss_pred ceecC--CCCCCcCCccEEEeccccCccc-cccc-----CCCCCccCEEeecCCCC--CcccCCCCCCCCccEEEecCcc
Q 038705 657 LISFP--DGGFLSSTLTKLWIYECEKLKA-LPNG-----MHNLTSLQELEIGDLPS--MVYFPEDGFPTNLHSLEIRDMK 726 (861)
Q Consensus 657 ~~~~~--~~~~~~~~L~~L~l~~~~~~~~-~~~~-----l~~l~~L~~L~l~~n~~--l~~~~~~~~~~~L~~L~l~~~~ 726 (861)
+. ++ ...+.+|.|+.|.++.|.+... +|+. ...+++|++|++..|+. ..++....++++|+.|.+..|.
T Consensus 259 i~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 259 ID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred cc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 43 33 2334567777777777664432 2332 24567777777777743 2233333445666666666655
Q ss_pred Ccc
Q 038705 727 MWK 729 (861)
Q Consensus 727 ~~~ 729 (861)
+.+
T Consensus 338 ln~ 340 (505)
T KOG3207|consen 338 LNK 340 (505)
T ss_pred ccc
Confidence 544
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.65 E-value=2.4e-08 Score=75.55 Aligned_cols=58 Identities=31% Similarity=0.486 Sum_probs=42.8
Q ss_pred CcccEEEccCccccccC-cccCCCCccceeeccCCcccccch-hhhccccccEEecCCcc
Q 038705 120 QRLRVLSLRGYSIFHVP-SSIGDLKHLQYLDLSETKIKTLPE-SVNKLWNLHTLLLENCH 177 (861)
Q Consensus 120 ~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~n~ 177 (861)
++|++|++++|.++.+| .+|..+++|++|++++|.++.+|+ .|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35777788887777775 466777888888888777777764 47777777777777764
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=5.7e-08 Score=89.92 Aligned_cols=105 Identities=31% Similarity=0.385 Sum_probs=36.8
Q ss_pred cCCCCcccEEEccCccccccCcccC-CCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhh-hhccccc
Q 038705 116 LFKLQRLRVLSLRGYSIFHVPSSIG-DLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANM-GSLIKLH 193 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~-~~L~~L~ 193 (861)
+.+..++|.|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+.+ +.+..+++|++|++++|. +..+++.+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccc-cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCC-CCccccchHHhCCcCC
Confidence 45555789999999999988 4565 689999999999999998 478999999999999985 55565555 4699999
Q ss_pred eeecCCCcccccCc--cccccccccccccceEe
Q 038705 194 HLKNSNVKALEEMP--KGIGNLTHLLTLSRFVV 224 (861)
Q Consensus 194 ~L~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~ 224 (861)
+|++++|.+ ..+. ..++.+++|+.|++..+
T Consensus 92 ~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 92 ELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred EEECcCCcC-CChHHhHHHHcCCCcceeeccCC
Confidence 999999984 3222 23555666666655443
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=4e-08 Score=112.29 Aligned_cols=100 Identities=23% Similarity=0.348 Sum_probs=89.3
Q ss_pred cccEEEccCcccc-ccCcccCCCCccceeeccCCccc-ccchhhhccccccEEecCCccchhhchhhhhhccccceeecC
Q 038705 121 RLRVLSLRGYSIF-HVPSSIGDLKHLQYLDLSETKIK-TLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNS 198 (861)
Q Consensus 121 ~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~ 198 (861)
.++.|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..++.+++|++|++++|.+.+.+|+.++.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999987 67999999999999999999998 899999999999999999999889999999999999999999
Q ss_pred CCcccccCccccccc-ccccccc
Q 038705 199 NVKALEEMPKGIGNL-THLLTLS 220 (861)
Q Consensus 199 ~~~~~~~~p~~i~~l-~~L~~L~ 220 (861)
+|.+.+.+|..++.+ .++..++
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCcccccCChHHhhccccCceEE
Confidence 999888999887754 3444443
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.55 E-value=5.2e-07 Score=93.89 Aligned_cols=94 Identities=30% Similarity=0.494 Sum_probs=54.2
Q ss_pred ccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccC
Q 038705 616 LDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQ 695 (861)
Q Consensus 616 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 695 (861)
+..+.+++.|++++| .+..+|. -.++|++|.+++|..++.+|..+ .++|++|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 334577778888877 3444552 23457777777777777776543 24777777777755555553 355
Q ss_pred EEeecCCCCCcccCCCCCCCCccEEEecC
Q 038705 696 ELEIGDLPSMVYFPEDGFPTNLHSLEIRD 724 (861)
Q Consensus 696 ~L~l~~n~~l~~~~~~~~~~~L~~L~l~~ 724 (861)
.|++..+ ....+ ..+|++|++|.+.+
T Consensus 116 ~L~L~~n-~~~~L--~~LPssLk~L~I~~ 141 (426)
T PRK15386 116 SLEIKGS-ATDSI--KNVPNGLTSLSINS 141 (426)
T ss_pred eEEeCCC-CCccc--ccCcchHhheeccc
Confidence 5555443 22222 12445666666644
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=9.1e-08 Score=104.66 Aligned_cols=128 Identities=26% Similarity=0.305 Sum_probs=106.5
Q ss_pred hhhcccCCccEEeecccccCcCCcccchhhhhhccCCCC-cccEEEccCccccccCcccCCCCccceeeccCCcccccch
Q 038705 82 EVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQ-RLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPE 160 (861)
Q Consensus 82 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~ 160 (861)
....+.+.++.|.+..+. ..++++....++ +|+.|++++|.+..+|..+..+++|+.|++++|++.++|.
T Consensus 110 ~~~~~~~~l~~L~l~~n~---------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~ 180 (394)
T COG4886 110 SELLELTNLTSLDLDNNN---------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPK 180 (394)
T ss_pred hhhhcccceeEEecCCcc---------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhh
Confidence 445566788888775543 456766677774 9999999999999999999999999999999999999999
Q ss_pred hhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCcccccccccccccc
Q 038705 161 SVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLS 220 (861)
Q Consensus 161 ~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 220 (861)
..+.+.+|+.|++++| .+..+|..++.+..|++|.+++|. ....+..+.++.++..|.
T Consensus 181 ~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 181 LLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence 9889999999999997 688899888888889999999996 445555666666666653
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=5.8e-08 Score=73.47 Aligned_cols=59 Identities=34% Similarity=0.339 Sum_probs=53.3
Q ss_pred CccceeeccCCcccccch-hhhccccccEEecCCccchhhchhhhhhccccceeecCCCc
Q 038705 143 KHLQYLDLSETKIKTLPE-SVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVK 201 (861)
Q Consensus 143 ~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~ 201 (861)
++|++|++++|+++.+|. .|..+++|++|++++|.+....|..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999986 58999999999999997766666789999999999999997
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=1.4e-08 Score=97.40 Aligned_cols=105 Identities=31% Similarity=0.307 Sum_probs=51.0
Q ss_pred cCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhcccccee
Q 038705 116 LFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHL 195 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L 195 (861)
..-.+.+|+|++|+|.|..+- .+..|++|+.||||+|.++++-..-.+|-|.++|.|+.| .+..+ +++++|.+|..|
T Consensus 303 vKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KLYSLvnL 379 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKLYSLVNL 379 (490)
T ss_pred hhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhhhhheec
Confidence 444455555555555555442 255555555555555555544333344555555555554 23333 235555555555
Q ss_pred ecCCCcccccC--ccccccccccccccceEe
Q 038705 196 KNSNVKALEEM--PKGIGNLTHLLTLSRFVV 224 (861)
Q Consensus 196 ~l~~~~~~~~~--p~~i~~l~~L~~L~~~~~ 224 (861)
|+++|++ ..+ -..||+|+.|+++.+.++
T Consensus 380 Dl~~N~I-e~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 380 DLSSNQI-EELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred cccccch-hhHHHhcccccccHHHHHhhcCC
Confidence 5555552 211 133555555555544433
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=2.4e-07 Score=105.94 Aligned_cols=111 Identities=13% Similarity=0.045 Sum_probs=85.9
Q ss_pred CcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEecc
Q 038705 598 LKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYE 677 (861)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 677 (861)
++.|++++|...+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67778888877777788888888888888888888888888888888888888888877777888777788888888888
Q ss_pred ccCcccccccCCCC-CccCEEeecCCCCCccc
Q 038705 678 CEKLKALPNGMHNL-TSLQELEIGDLPSMVYF 708 (861)
Q Consensus 678 ~~~~~~~~~~l~~l-~~L~~L~l~~n~~l~~~ 708 (861)
|.+.+.+|..+... .++..+++.+|+.+...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCC
Confidence 88777887776543 45667777777655443
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=5.3e-08 Score=93.43 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=81.5
Q ss_pred cCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCccccc----chh-
Q 038705 87 AKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTL----PES- 161 (861)
Q Consensus 87 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~l----p~~- 161 (861)
+.+|..|.+.+..+++...|-....+|-++..+++|+.+.++.+.-..+-.-...-+.|+++.+.+..+... |..
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~ 260 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETI 260 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhh
Confidence 678888888887776533333333333347888888888888877554422223346677777777655432 221
Q ss_pred -------------------hhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCccccccccccccccce
Q 038705 162 -------------------VNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRF 222 (861)
Q Consensus 162 -------------------i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 222 (861)
+-..+.|..+||++| .+..+-+++.-+++++.|++++|. +..+. .+..|.+|++|+++
T Consensus 261 ~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 261 LADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLS 337 (490)
T ss_pred hcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecc
Confidence 223356777777776 455566667777777777777776 33322 25556666666544
Q ss_pred Ee
Q 038705 223 VV 224 (861)
Q Consensus 223 ~~ 224 (861)
++
T Consensus 338 ~N 339 (490)
T KOG1259|consen 338 GN 339 (490)
T ss_pred cc
Confidence 43
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.40 E-value=1.2e-06 Score=91.31 Aligned_cols=61 Identities=26% Similarity=0.397 Sum_probs=36.0
Q ss_pred hhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCc
Q 038705 517 ALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNL 585 (861)
Q Consensus 517 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l 585 (861)
.+..+.+++.|++++| .+..+| ..+++|++|.+++|..++. +|. ..+++|+.|.+.+|..+
T Consensus 47 r~~~~~~l~~L~Is~c--~L~sLP----~LP~sLtsL~Lsnc~nLts-LP~-~LP~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 47 QIEEARASGRLYIKDC--DIESLP----VLPNELTEITIENCNNLTT-LPG-SIPEGLEKLTVCHCPEI 107 (426)
T ss_pred HHHHhcCCCEEEeCCC--CCcccC----CCCCCCcEEEccCCCCccc-CCc-hhhhhhhheEccCcccc
Confidence 3445678888888888 555665 2355677777777766544 221 22345555555555443
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.40 E-value=4.6e-08 Score=102.33 Aligned_cols=145 Identities=23% Similarity=0.288 Sum_probs=73.2
Q ss_pred EEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcccCCCCccc
Q 038705 67 HFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQ 146 (861)
Q Consensus 67 ~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~ 146 (861)
...+..|.+..+ +..+..+-.|..+++..+. ...+|..+..+..|.+|||+.|.++.+|..++.| -|+
T Consensus 79 ~aDlsrNR~~el--p~~~~~f~~Le~liLy~n~---------~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLk 146 (722)
T KOG0532|consen 79 FADLSRNRFSEL--PEEACAFVSLESLILYHNC---------IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLK 146 (722)
T ss_pred hhhccccccccC--chHHHHHHHHHHHHHHhcc---------ceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cce
Confidence 344444443322 2334445555555553322 2345555666666666666665555555555443 255
Q ss_pred eeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccc----------------------eeecCCCcccc
Q 038705 147 YLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLH----------------------HLKNSNVKALE 204 (861)
Q Consensus 147 ~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~----------------------~L~l~~~~~~~ 204 (861)
+|-+++|+++.+|..|+.+.+|..||.+.| .+..+|..++.|.+|+ .||++.|+ +.
T Consensus 147 vli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNk-is 224 (722)
T KOG0532|consen 147 VLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNK-IS 224 (722)
T ss_pred eEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCc-ee
Confidence 555555555555555555555555555554 2444444455554444 45555554 44
Q ss_pred cCccccccccccccccceEec
Q 038705 205 EMPKGIGNLTHLLTLSRFVVG 225 (861)
Q Consensus 205 ~~p~~i~~l~~L~~L~~~~~~ 225 (861)
.+|..|.+|++||+|.+-.+.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ecchhhhhhhhheeeeeccCC
Confidence 555555555555555444333
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.35 E-value=8.3e-08 Score=94.65 Aligned_cols=91 Identities=22% Similarity=0.180 Sum_probs=61.0
Q ss_pred hhhhccCCCCcccEEEccCcccc-----ccCcccCCCCccceeeccCC---c-ccccchhh-------hccccccEEecC
Q 038705 111 SVLYMLFKLQRLRVLSLRGYSIF-----HVPSSIGDLKHLQYLDLSET---K-IKTLPESV-------NKLWNLHTLLLE 174 (861)
Q Consensus 111 ~~~~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~~---~-i~~lp~~i-------~~L~~L~~L~l~ 174 (861)
.+.+....+..++.++|++|.+. .+...+.+.++||.-+++.- + ..++|+.+ -...+|++||||
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 34444778889999999999976 34566777888998888864 1 22555542 344578888888
Q ss_pred Cccchhhchh----hhhhccccceeecCCCc
Q 038705 175 NCHRLKKLCA----NMGSLIKLHHLKNSNVK 201 (861)
Q Consensus 175 ~n~~~~~lp~----~~~~L~~L~~L~l~~~~ 201 (861)
.|-+-..-+. -+...+.|++|.|.+|.
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 7754333332 24556778888887776
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=7.8e-07 Score=61.19 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=24.5
Q ss_pred cccEEEccCccccccCcccCCCCccceeeccCCcccccc
Q 038705 121 RLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLP 159 (861)
Q Consensus 121 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp 159 (861)
+|++|++++|.|+.+|..+++|++|++|++++|.|+++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666666666666666666666666553
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3e-08 Score=95.18 Aligned_cols=157 Identities=19% Similarity=0.152 Sum_probs=95.6
Q ss_pred cCcEEeeccccCcc-hhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCC--CCCCcCCccEE
Q 038705 597 ALKYLSVDHCLKLK-SLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPD--GGFLSSTLTKL 673 (861)
Q Consensus 597 ~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L 673 (861)
.|++||++...... .+-..+..+.+|+.|.|.++.....+..++..-.+|+.|+++.|...+.... -+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777776653332 2333455677777777777777766666777777777777777765554322 12346677777
Q ss_pred EeccccCcccccccC--CCCCccCEEeecCCCCCcccCCC----CCCCCccEEEecCccCcccccccccCCcCCCcCeEE
Q 038705 674 WIYECEKLKALPNGM--HNLTSLQELEIGDLPSMVYFPED----GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLS 747 (861)
Q Consensus 674 ~l~~~~~~~~~~~~l--~~l~~L~~L~l~~n~~l~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 747 (861)
+++-|......-..+ +--++|+.|+++++...-..... .-+++|..||+++|..++...... +..++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeee
Confidence 777776554331111 11246777777776432111111 336788888888887776432222 77888888888
Q ss_pred eecCCCc
Q 038705 748 IHGCQDM 754 (861)
Q Consensus 748 l~~~~~~ 754 (861)
++.|-.+
T Consensus 345 lsRCY~i 351 (419)
T KOG2120|consen 345 LSRCYDI 351 (419)
T ss_pred hhhhcCC
Confidence 8888543
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.15 E-value=2.7e-07 Score=91.15 Aligned_cols=92 Identities=22% Similarity=0.198 Sum_probs=53.7
Q ss_pred hhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCcccc----ccC-------cccCCCCccceeec
Q 038705 82 EVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIF----HVP-------SSIGDLKHLQYLDL 150 (861)
Q Consensus 82 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~----~lp-------~~~~~L~~L~~L~L 150 (861)
+.......+.-+.+.++.- ...-...+-+.+.+.+.||.-++++-... .+| .++...++|++|||
T Consensus 24 ~~~~~~~s~~~l~lsgnt~----G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTF----GTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred HHhcccCceEEEeccCCch----hHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence 3445566777777765441 00011122223777778888888764322 233 33445568888888
Q ss_pred cCCccc-ccchh----hhccccccEEecCCcc
Q 038705 151 SETKIK-TLPES----VNKLWNLHTLLLENCH 177 (861)
Q Consensus 151 s~~~i~-~lp~~----i~~L~~L~~L~l~~n~ 177 (861)
|.|.+. .-++. |+.++.|++|.|.+|.
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 888665 22222 6677888888888873
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.09 E-value=9.9e-07 Score=96.51 Aligned_cols=111 Identities=28% Similarity=0.282 Sum_probs=83.5
Q ss_pred hhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhcccc
Q 038705 113 LYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKL 192 (861)
Q Consensus 113 ~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L 192 (861)
...+..+++|++|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++|. +..+ ..+..+++|
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~-~~~~~l~~L 164 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDI-SGLESLKSL 164 (414)
T ss_pred hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhc-cCCccchhh
Confidence 3338888999999999999988866588899999999999999888 577888889999999984 4443 346668899
Q ss_pred ceeecCCCcccccCccc-cccccccccccceEeccc
Q 038705 193 HHLKNSNVKALEEMPKG-IGNLTHLLTLSRFVVGKD 227 (861)
Q Consensus 193 ~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~ 227 (861)
+.+++++|. +..+... ...+.+++.+++..+...
T Consensus 165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNR-IVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcch-hhhhhhhhhhhccchHHHhccCCchh
Confidence 999999998 4444332 466777777765554433
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3.1e-08 Score=95.03 Aligned_cols=178 Identities=16% Similarity=0.101 Sum_probs=111.4
Q ss_pred CCccEEeeccccCcc-cccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCccccc--ccCCCCCccCE
Q 038705 620 SSLEAVKISYCENLI-VLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALP--NGMHNLTSLQE 696 (861)
Q Consensus 620 ~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~ 696 (861)
+.|++|||+.-.+.. .+-.-+..+.+|+.|.+.+++....+...++.-.+|+.|+++.|....... --+.+|.+|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 568999998865543 223345668899999999987777676667777889999999887665431 13478888899
Q ss_pred EeecCCCCCcccCCC---CCCCCccEEEecCccCcc---cccccccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCc
Q 038705 697 LEIGDLPSMVYFPED---GFPTNLHSLEIRDMKMWK---SLIEWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASL 770 (861)
Q Consensus 697 L~l~~n~~l~~~~~~---~~~~~L~~L~l~~~~~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 770 (861)
|+++.|...+..-.. ..-++|+.|++++|...- .+.. ....+|+|..||+++|..+.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t--L~~rcp~l~~LDLSD~v~l~--------------- 327 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST--LVRRCPNLVHLDLSDSVMLK--------------- 327 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH--HHHhCCceeeeccccccccC---------------
Confidence 999888544432111 123567777777764321 1111 14556666666666664332
Q ss_pred cEEEeccCCCCccccc-CCCCCCCCCEEeccCCCCccc--CCCCCCccccceeeccCCc
Q 038705 771 TKLEIVRFSNLEYLSS-VGESLPSLECLILDDCPKLRY--FPDKGLPPSLLQLHISNCP 826 (861)
Q Consensus 771 ~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~sL~~L~l~~c~ 826 (861)
.-.. ...+++.|++|.++.|=.+-- +-.....|+|.+|++.+|-
T Consensus 328 ------------~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 328 ------------NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ------------chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 2111 116778888888888733311 1112335788888888873
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=7.2e-06 Score=56.42 Aligned_cols=36 Identities=44% Similarity=0.533 Sum_probs=29.3
Q ss_pred CccceeeccCCcccccchhhhccccccEEecCCccc
Q 038705 143 KHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHR 178 (861)
Q Consensus 143 ~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~ 178 (861)
++|++|++++|+|+++|..|++|++|++|++++|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 478999999999999988899999999999998853
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=2.1e-06 Score=81.62 Aligned_cols=95 Identities=21% Similarity=0.204 Sum_probs=68.9
Q ss_pred hhhhccCCCCcccEEEccCcccc-----ccCcccCCCCccceeeccCCccc----ccch-------hhhccccccEEecC
Q 038705 111 SVLYMLFKLQRLRVLSLRGYSIF-----HVPSSIGDLKHLQYLDLSETKIK----TLPE-------SVNKLWNLHTLLLE 174 (861)
Q Consensus 111 ~~~~~~~~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~~~i~----~lp~-------~i~~L~~L~~L~l~ 174 (861)
.+...+..+..+..+|||||.|. .+...|.+-.+|+.-+++.-... ++|+ .+-++++|+..+|+
T Consensus 21 ~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 21 GVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred HHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 44445666888999999999986 35566777889999988864221 3443 45678899999999
Q ss_pred Cccchhhchhh----hhhccccceeecCCCcccccC
Q 038705 175 NCHRLKKLCAN----MGSLIKLHHLKNSNVKALEEM 206 (861)
Q Consensus 175 ~n~~~~~lp~~----~~~L~~L~~L~l~~~~~~~~~ 206 (861)
.|-+-...|+. +..-+.|.||.+++|. .+.+
T Consensus 101 DNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 101 DNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred ccccCcccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 98765555544 5667889999999988 5543
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=2.3e-05 Score=89.44 Aligned_cols=136 Identities=19% Similarity=0.188 Sum_probs=94.7
Q ss_pred CCCceeEEEEEecCCCccchh--hhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcc
Q 038705 61 FSENLRHFSYLRGGYDGLKMF--EVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSS 138 (861)
Q Consensus 61 ~~~~~~~lsl~~~~~~~~~~~--~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~ 138 (861)
..+++++|.+.+...-. ..+ .-..-+|.||+|.+.+.. ....++..-+..+++|+.||+|+++++.+ ..
T Consensus 120 sr~nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~-------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~G 190 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVISGRQ-------FDNDDFSQLCASFPNLRSLDISGTNISNL-SG 190 (699)
T ss_pred HHHhhhhcCccccchhh-ccHHHHHhhhCcccceEEecCce-------ecchhHHHHhhccCccceeecCCCCccCc-HH
Confidence 34677888887754221 122 223358999999886633 22333333389999999999999999988 78
Q ss_pred cCCCCccceeeccCCcccccc--hhhhccccccEEecCCccchhh--chh----hhhhccccceeecCCCccccc
Q 038705 139 IGDLKHLQYLDLSETKIKTLP--ESVNKLWNLHTLLLENCHRLKK--LCA----NMGSLIKLHHLKNSNVKALEE 205 (861)
Q Consensus 139 ~~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~l~~n~~~~~--lp~----~~~~L~~L~~L~l~~~~~~~~ 205 (861)
+++|++|++|.+.+-.+..-. ..+.+|++|++||+|....... +.. .-..|++||.||.+++.+...
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 899999999999888777432 5688999999999997432211 111 113488999999998875443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=1.2e-05 Score=68.53 Aligned_cols=93 Identities=24% Similarity=0.260 Sum_probs=75.5
Q ss_pred ccCCCCcccEEEccCccccccCcccC-CCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccc
Q 038705 115 MLFKLQRLRVLSLRGYSIFHVPSSIG-DLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLH 193 (861)
Q Consensus 115 ~~~~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~ 193 (861)
.+.+..+|...+|++|.+..+|..|. ..+-.++|++++|.|.++|.++..++.|+.|+++.|. +...|..|..|.+|-
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLD 126 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHH
Confidence 36677788888999999998888884 4458899999999999999889999999999999874 666777788888888
Q ss_pred eeecCCCcccccCccc
Q 038705 194 HLKNSNVKALEEMPKG 209 (861)
Q Consensus 194 ~L~l~~~~~~~~~p~~ 209 (861)
.|+..+|. ...+|-+
T Consensus 127 ~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 127 MLDSPENA-RAEIDVD 141 (177)
T ss_pred HhcCCCCc-cccCcHH
Confidence 88888887 5555544
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.72 E-value=7.8e-06 Score=89.49 Aligned_cols=106 Identities=27% Similarity=0.333 Sum_probs=83.9
Q ss_pred CCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccceee
Q 038705 117 FKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLK 196 (861)
Q Consensus 117 ~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~ 196 (861)
..+..++.+.+..|.+..+-..+..+++|.+|++.+|.|..+...+..+.+|++|++++|. +..+ ..+..++.|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccc-cchhhccchhhhe
Confidence 4566777777999999886666899999999999999999986669999999999999985 4444 3478888899999
Q ss_pred cCCCcccccCccccccccccccccceEecc
Q 038705 197 NSNVKALEEMPKGIGNLTHLLTLSRFVVGK 226 (861)
Q Consensus 197 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~ 226 (861)
+++|. +..+ .++..++.|+.+++.++..
T Consensus 147 l~~N~-i~~~-~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 147 LSGNL-ISDI-SGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred eccCc-chhc-cCCccchhhhcccCCcchh
Confidence 99998 3333 3466677888776655543
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=4e-06 Score=90.58 Aligned_cols=82 Identities=28% Similarity=0.256 Sum_probs=46.3
Q ss_pred cCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchh-hhccccccEEecCCccchhhchhhhhhccccce
Q 038705 116 LFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPES-VNKLWNLHTLLLENCHRLKKLCANMGSLIKLHH 194 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~ 194 (861)
++-++.|+.|+|++|++.+.. .+..+.+|++|||++|.+..+|.- ...++ |+.|.+++|. +..+ .++.+|++|+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhh-hhHHhhhhhhc
Confidence 555566666666666665553 556666666666666666655533 22332 6666666652 3333 23566666666
Q ss_pred eecCCCc
Q 038705 195 LKNSNVK 201 (861)
Q Consensus 195 L~l~~~~ 201 (861)
||+++|-
T Consensus 259 LDlsyNl 265 (1096)
T KOG1859|consen 259 LDLSYNL 265 (1096)
T ss_pred cchhHhh
Confidence 6666664
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=4e-05 Score=74.21 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=15.9
Q ss_pred CCccceeeccCCccc---ccchhhhccccccEEecCCc
Q 038705 142 LKHLQYLDLSETKIK---TLPESVNKLWNLHTLLLENC 176 (861)
Q Consensus 142 L~~L~~L~Ls~~~i~---~lp~~i~~L~~L~~L~l~~n 176 (861)
.++++.|||.+|.|+ ++-....+|++|++|+++.|
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN 107 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence 344455555555444 22222344455555555544
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.49 E-value=1.2e-05 Score=86.92 Aligned_cols=126 Identities=22% Similarity=0.107 Sum_probs=95.3
Q ss_pred CCceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcccCC
Q 038705 62 SENLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGD 141 (861)
Q Consensus 62 ~~~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~ 141 (861)
|..+...+...|....+ ..++.=++.|+.|.+..+. + .-...+..+.+|+.|||++|.++.+|.-=..
T Consensus 163 Wn~L~~a~fsyN~L~~m--D~SLqll~ale~LnLshNk--------~--~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~ 230 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLM--DESLQLLPALESLNLSHNK--------F--TKVDNLRRLPKLKHLDLSYNCLRHVPQLSMV 230 (1096)
T ss_pred hhhHhhhhcchhhHHhH--HHHHHHHHHhhhhccchhh--------h--hhhHHHHhcccccccccccchhccccccchh
Confidence 45566777776654432 3556667899999885543 2 2223588999999999999999988763333
Q ss_pred CCccceeeccCCcccccchhhhccccccEEecCCccchhhch--hhhhhccccceeecCCCc
Q 038705 142 LKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLC--ANMGSLIKLHHLKNSNVK 201 (861)
Q Consensus 142 L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~l~~~~ 201 (861)
=.+|..|.+++|.++++ ..|.+|++|+.||+++| .+.... .-++.|..|+.|.|.+|.
T Consensus 231 gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 231 GCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhheeeeecccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 34599999999999998 78999999999999998 443322 236889999999999998
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=9.8e-05 Score=84.36 Aligned_cols=107 Identities=22% Similarity=0.182 Sum_probs=77.7
Q ss_pred cCCccEEeecccccCcCCcccchhhhhhc-cCCCCcccEEEccCcccc--ccCcccCCCCccceeeccCCcccccchhhh
Q 038705 87 AKRLRTFLPLVLSNTWSGKAYLAHSVLYM-LFKLQRLRVLSLRGYSIF--HVPSSIGDLKHLQYLDLSETKIKTLPESVN 163 (861)
Q Consensus 87 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~ 163 (861)
-.+||.|.+.|.. .....-|.. -..++.||.|.+++-.+. ++-.-..++++|+.||+|+++++.+ .+|+
T Consensus 121 r~nL~~LdI~G~~-------~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSE-------LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred HHhhhhcCccccc-------hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHh
Confidence 4678888887644 234445555 667788999998886653 2334456788999999999999988 7899
Q ss_pred ccccccEEecCCccchh-hchhhhhhccccceeecCCCc
Q 038705 164 KLWNLHTLLLENCHRLK-KLCANMGSLIKLHHLKNSNVK 201 (861)
Q Consensus 164 ~L~~L~~L~l~~n~~~~-~lp~~~~~L~~L~~L~l~~~~ 201 (861)
+|++||+|.+++=.+.. ..-..+..|++|++||+|...
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 99999999888622111 112357889999999999776
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00013 Score=70.87 Aligned_cols=134 Identities=12% Similarity=0.015 Sum_probs=78.5
Q ss_pred CCCCccEEeeccccCcc--cccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCccc-ccccCCCCCcc
Q 038705 618 NNSSLEAVKISYCENLI--VLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKA-LPNGMHNLTSL 694 (861)
Q Consensus 618 ~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L 694 (861)
..+.++++||.+|.+.. .+...+.++|.|+.|+++.|+....+-..-.+..+|+.|.+.|....-. .-..+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 56778888888877654 3444556788888888888865544432224567888888877553322 23345778888
Q ss_pred CEEeecCCCCCcccCCC-----CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCC
Q 038705 695 QELEIGDLPSMVYFPED-----GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQ 752 (861)
Q Consensus 695 ~~L~l~~n~~l~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 752 (861)
++|+++.| ..+.+..+ ..-+.+++|....|..............+|++..+-+..||
T Consensus 149 telHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 149 TELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 88888887 33333221 12234555555555443322222223445666666666664
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.22 E-value=6.9e-05 Score=63.99 Aligned_cols=113 Identities=15% Similarity=0.119 Sum_probs=85.3
Q ss_pred CceeEEEEEecCCCccc-hhhhhcccCCccEEeecccccCcCCcccchhhhhhc-cCCCCcccEEEccCccccccCcccC
Q 038705 63 ENLRHFSYLRGGYDGLK-MFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYM-LFKLQRLRVLSLRGYSIFHVPSSIG 140 (861)
Q Consensus 63 ~~~~~lsl~~~~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~lp~~~~ 140 (861)
.....+.+..+.+..+. ....+.+..+|....+.++. ..++|+. -.+++.++.|++++|.|+.+|..+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~---------fk~fp~kft~kf~t~t~lNl~~neisdvPeE~A 97 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG---------FKKFPKKFTIKFPTATTLNLANNEISDVPEELA 97 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccch---------hhhCCHHHhhccchhhhhhcchhhhhhchHHHh
Confidence 34445555555432221 22334566777777776643 4677777 5667799999999999999999999
Q ss_pred CCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhh
Q 038705 141 DLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCAN 185 (861)
Q Consensus 141 ~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~ 185 (861)
.++.||.|+++.|.+...|+.|..|.+|-.||.-+|. ...+|-.
T Consensus 98 am~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 98 AMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred hhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 9999999999999999999999999999999999874 5556654
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.15 E-value=2.4e-05 Score=88.63 Aligned_cols=193 Identities=21% Similarity=0.241 Sum_probs=92.2
Q ss_pred CCCCccEEeeccccCcccc--cccccCCCCCcEEeeccCCCcee--cCCCCCCcCCccEEEeccccCccc--ccccCCCC
Q 038705 618 NNSSLEAVKISYCENLIVL--PDGLLKLNHLQEIFISHCPNLIS--FPDGGFLSSTLTKLWIYECEKLKA--LPNGMHNL 691 (861)
Q Consensus 618 ~l~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l 691 (861)
.+++|+.|++++|...+.. ......+++|+.|.+.+|..++. +......+++|++|++++|...+. +.....++
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 3456666666665532211 11112256666666666653211 111122356666666666665422 11222334
Q ss_pred CccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcc-cccccccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCc
Q 038705 692 TSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWK-SLIEWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASL 770 (861)
Q Consensus 692 ~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 770 (861)
++|+.|.+..+.. ++.++.+.+..+.... +......+..+++++.+.+..|. .....
T Consensus 321 ~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~------------ 378 (482)
T KOG1947|consen 321 PNLRELKLLSLNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG------------ 378 (482)
T ss_pred cchhhhhhhhcCC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc------------
Confidence 5444444333321 3344444444443332 11111125566666666666664 22211
Q ss_pred cEEEeccCCCCc-ccccCCCCCCCCCEEeccCCCCcccCCCCCC---ccccceeeccCCcchHHHH
Q 038705 771 TKLEIVRFSNLE-YLSSVGESLPSLECLILDDCPKLRYFPDKGL---PPSLLQLHISNCPLIEESC 832 (861)
Q Consensus 771 ~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~---~~sL~~L~l~~c~~l~~~~ 832 (861)
..+.+.+|+.++ .+......+..++.|++..|...+.-..... ...++.+++.+|+.+....
T Consensus 379 ~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 379 LELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred hHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 023344555552 2222223444478888888876665332111 4557778888888776643
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.93 E-value=5.5e-05 Score=85.65 Aligned_cols=62 Identities=27% Similarity=0.345 Sum_probs=36.7
Q ss_pred CccEEEeccCCCCcccccCCCCCCCCC-EEeccCCCCcc-cCCC-CCCccccceeeccCCcchHH
Q 038705 769 SLTKLEIVRFSNLEYLSSVGESLPSLE-CLILDDCPKLR-YFPD-KGLPPSLLQLHISNCPLIEE 830 (861)
Q Consensus 769 ~L~~L~l~~~~~l~~l~~~~~~~~~L~-~L~l~~c~~l~-~~~~-~~~~~sL~~L~l~~c~~l~~ 830 (861)
.+..+...+|++++.+........... .+.+.+|+.++ .+.. .....+++.|+++.|...+.
T Consensus 352 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 352 DLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred hHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence 456666666776666654442233333 57788888883 2222 11223389999999986443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.84 E-value=0.001 Score=61.20 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=69.4
Q ss_pred CcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhc-cccccEEecCCccchhhch--hhhhhccccceee
Q 038705 120 QRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNK-LWNLHTLLLENCHRLKKLC--ANMGSLIKLHHLK 196 (861)
Q Consensus 120 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~-L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~ 196 (861)
.....+||++|.+..+ ..|..+..|.+|.+++|+|+.+-..+.. +.+|..|.+.+|+ +..+. ..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 3567888888888877 4577888889999999988888666544 5568888888875 33332 2256777888888
Q ss_pred cCCCcccccCc---cccccccccccccceE
Q 038705 197 NSNVKALEEMP---KGIGNLTHLLTLSRFV 223 (861)
Q Consensus 197 l~~~~~~~~~p---~~i~~l~~L~~L~~~~ 223 (861)
+-+|.....-- .-+.++++|++|+...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88887322111 1156667777665443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.00017 Score=69.35 Aligned_cols=103 Identities=21% Similarity=0.240 Sum_probs=64.8
Q ss_pred cCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhch--hhhhhccccc
Q 038705 116 LFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLC--ANMGSLIKLH 193 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~ 193 (861)
.+.+.+.+.|++-|+.+..+ +.+.+++.|++|.||-|.|+.+ +.+..+++|+.|+|+.|. +..+- .-+.+|++|+
T Consensus 15 ~sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR 91 (388)
T ss_pred hhHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence 33455666677777777665 3346677777777777777776 567777777777777763 33332 2256677777
Q ss_pred eeecCCCcccccCccc-----cccccccccccc
Q 038705 194 HLKNSNVKALEEMPKG-----IGNLTHLLTLSR 221 (861)
Q Consensus 194 ~L~l~~~~~~~~~p~~-----i~~l~~L~~L~~ 221 (861)
.|.+..|.-.+.-+.. +.-|++|+.|+.
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 7777777644444433 445666666653
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.69 E-value=0.00069 Score=38.57 Aligned_cols=19 Identities=42% Similarity=0.826 Sum_probs=9.9
Q ss_pred cceeeccCCcccccchhhh
Q 038705 145 LQYLDLSETKIKTLPESVN 163 (861)
Q Consensus 145 L~~L~Ls~~~i~~lp~~i~ 163 (861)
||+||+++|+|+.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554444
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.67 E-value=0.0021 Score=59.26 Aligned_cols=89 Identities=24% Similarity=0.168 Sum_probs=62.1
Q ss_pred hhhccCCCCcccEEEccCccccccCccc-CCCCccceeeccCCcccccc--hhhhccccccEEecCCccchhhchh----
Q 038705 112 VLYMLFKLQRLRVLSLRGYSIFHVPSSI-GDLKHLQYLDLSETKIKTLP--ESVNKLWNLHTLLLENCHRLKKLCA---- 184 (861)
Q Consensus 112 ~~~~~~~l~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~l~~n~~~~~lp~---- 184 (861)
..+.|.+++.|..|.|++|+|+.+...+ .-+++|..|.|.+|+|.++- ..+..+++|++|.+-+|... ..+.
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~-~k~~YR~y 134 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE-HKKNYRLY 134 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh-cccCceeE
Confidence 3344888888888888888888885445 55667888888888877653 33677788888888776422 2221
Q ss_pred hhhhccccceeecCCCc
Q 038705 185 NMGSLIKLHHLKNSNVK 201 (861)
Q Consensus 185 ~~~~L~~L~~L~l~~~~ 201 (861)
.+.++++|+.||...-.
T Consensus 135 vl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 135 VLYKLPSLRTLDFQKVT 151 (233)
T ss_pred EEEecCcceEeehhhhh
Confidence 25677888888877654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0029 Score=61.10 Aligned_cols=105 Identities=23% Similarity=0.204 Sum_probs=46.6
Q ss_pred CCCCcccEEEccCccccccCcccCCCCccceeeccCC--ccc-ccchhhhccccccEEecCCccch--hhchhhhhhccc
Q 038705 117 FKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSET--KIK-TLPESVNKLWNLHTLLLENCHRL--KKLCANMGSLIK 191 (861)
Q Consensus 117 ~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~--~i~-~lp~~i~~L~~L~~L~l~~n~~~--~~lp~~~~~L~~ 191 (861)
..+..|+.|++.+..++.+ ..+..|++|++|.++.| .+. .++.-..++.+|++|++++|++- ..+ ..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcc
Confidence 3344444444444444433 23444555555555555 332 33333344455555555555321 111 11344555
Q ss_pred cceeecCCCcccccCc----cccccccccccccceEe
Q 038705 192 LHHLKNSNVKALEEMP----KGIGNLTHLLTLSRFVV 224 (861)
Q Consensus 192 L~~L~l~~~~~~~~~p----~~i~~l~~L~~L~~~~~ 224 (861)
|..|++..|.... +- .-+.-+++|..|+...+
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 5555555554211 11 11444556666654443
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.20 E-value=0.0025 Score=36.27 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=18.8
Q ss_pred cccEEEccCccccccCcccCCC
Q 038705 121 RLRVLSLRGYSIFHVPSSIGDL 142 (861)
Q Consensus 121 ~L~~L~L~~~~i~~lp~~~~~L 142 (861)
+|++||+++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.001 Score=64.19 Aligned_cols=81 Identities=27% Similarity=0.251 Sum_probs=66.9
Q ss_pred cCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccch--hhhccccccEEecCCccchhhchh-----hhhh
Q 038705 116 LFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPE--SVNKLWNLHTLLLENCHRLKKLCA-----NMGS 188 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~l~~n~~~~~lp~-----~~~~ 188 (861)
+.+|+.|+||.||-|+|+.+ ..+..+++|+.|+|..|.|..+-+ -+.+|++|++|-|..|.--+.-+. .+..
T Consensus 37 c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 67999999999999999988 558899999999999999987743 378999999999988766555543 2567
Q ss_pred ccccceeec
Q 038705 189 LIKLHHLKN 197 (861)
Q Consensus 189 L~~L~~L~l 197 (861)
|++|+.||=
T Consensus 116 LPnLkKLDn 124 (388)
T KOG2123|consen 116 LPNLKKLDN 124 (388)
T ss_pred cccchhccC
Confidence 888888864
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.62 E-value=0.0048 Score=59.56 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=9.5
Q ss_pred CCcCCCcCeEEeecCC
Q 038705 737 LNRFTSLRRLSIHGCQ 752 (861)
Q Consensus 737 ~~~l~~L~~L~l~~~~ 752 (861)
|.-+++|++|+-....
T Consensus 139 f~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHhhhhccccccccC
Confidence 5556666666655543
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.40 E-value=0.007 Score=58.38 Aligned_cols=89 Identities=21% Similarity=0.232 Sum_probs=66.6
Q ss_pred ccCCCCccceeeccCCccc-----ccchhhhccccccEEecCCccch----hhchhh-------hhhccccceeecCCCc
Q 038705 138 SIGDLKHLQYLDLSETKIK-----TLPESVNKLWNLHTLLLENCHRL----KKLCAN-------MGSLIKLHHLKNSNVK 201 (861)
Q Consensus 138 ~~~~L~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~l~~n~~~----~~lp~~-------~~~L~~L~~L~l~~~~ 201 (861)
.+.-+..+..++||+|.|. .+...|.+-.+|++.+++.- ++ .++|++ +-++++|+..++++|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3455788999999999886 45556888899999999863 23 344443 4567899999999999
Q ss_pred ccccCccc----cccccccccccceEeccc
Q 038705 202 ALEEMPKG----IGNLTHLLTLSRFVVGKD 227 (861)
Q Consensus 202 ~~~~~p~~----i~~l~~L~~L~~~~~~~~ 227 (861)
+....|.. |++-+.|.+|.+.+++..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 66566654 667788999988776644
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.36 E-value=0.001 Score=62.33 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=69.6
Q ss_pred cCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhcccccee
Q 038705 116 LFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHL 195 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L 195 (861)
+..++..++||++.|++..+-..|+.++.|..|+++.|.|..+|.+++.+..++.+++..| .....|.+++.+++++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 6677788888888888777777778888888888888888888888888888888888775 577788888888888888
Q ss_pred ecCCCcc
Q 038705 196 KNSNVKA 202 (861)
Q Consensus 196 ~l~~~~~ 202 (861)
++.++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 8887763
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.97 E-value=0.051 Score=48.38 Aligned_cols=104 Identities=8% Similarity=0.177 Sum_probs=55.6
Q ss_pred hhhcccCCccEEeecccccCcCCcccchhhhhhc-cCCCCcccEEEccCcccccc-CcccCCCCccceeeccCCcccccc
Q 038705 82 EVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYM-LFKLQRLRVLSLRGYSIFHV-PSSIGDLKHLQYLDLSETKIKTLP 159 (861)
Q Consensus 82 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~i~~lp 159 (861)
.+|.++++|+.+.+.+ ....+... |..++.|+.+.+.++ +..+ ..+|.....|+.+.+.. .+..++
T Consensus 6 ~~F~~~~~l~~i~~~~----------~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~ 73 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN----------TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG 73 (129)
T ss_dssp TTTTT-TT--EEEETS----------T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-
T ss_pred HHHhCCCCCCEEEECC----------CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccc
Confidence 4566777888776642 12355555 888878888888764 6666 34567777788888865 555555
Q ss_pred hh-hhccccccEEecCCccchhhch-hhhhhccccceeecCCC
Q 038705 160 ES-VNKLWNLHTLLLENCHRLKKLC-ANMGSLIKLHHLKNSNV 200 (861)
Q Consensus 160 ~~-i~~L~~L~~L~l~~n~~~~~lp-~~~~~L~~L~~L~l~~~ 200 (861)
.. |..+++|+.+++..+ +..++ ..+.+. +|+.+.+..+
T Consensus 74 ~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 74 DNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPSN 113 (129)
T ss_dssp TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TTB
T ss_pred cccccccccccccccCcc--ccEEchhhhcCC-CceEEEECCC
Confidence 43 677888888888653 33333 345665 7777776653
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.93 E-value=0.013 Score=30.74 Aligned_cols=16 Identities=44% Similarity=0.829 Sum_probs=6.1
Q ss_pred ccceeeccCCcccccc
Q 038705 144 HLQYLDLSETKIKTLP 159 (861)
Q Consensus 144 ~L~~L~Ls~~~i~~lp 159 (861)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.65 E-value=0.21 Score=44.32 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=11.9
Q ss_pred CCCCccEEeeccccCcccccccccCCCCCcEEeecc
Q 038705 618 NNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISH 653 (861)
Q Consensus 618 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 653 (861)
++.+|+.+.+.. .....-...|.++++|+.+.+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred CCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 444455555442 22222233444454555555544
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.08 E-value=0.0056 Score=56.62 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=51.6
Q ss_pred CccEEEecCccCcccccccccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCC-CCCCCC
Q 038705 716 NLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVG-ESLPSL 794 (861)
Q Consensus 716 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L 794 (861)
.++.+|-+++.+.....+. +..+++++.|.+.+|..+....-+..+. ..++|+.|++++|+.++.-+... ..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~--L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEH--LRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHH--HhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHHHHHHHhhhh
Confidence 4667777777766655555 7777888888888876655433322222 34555555555555555444333 555555
Q ss_pred CEEeccCCCCccc
Q 038705 795 ECLILDDCPKLRY 807 (861)
Q Consensus 795 ~~L~l~~c~~l~~ 807 (861)
+.|.+.+.+.+..
T Consensus 179 r~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 179 RRLHLYDLPYVAN 191 (221)
T ss_pred HHHHhcCchhhhc
Confidence 5555555544443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.81 E-value=0.036 Score=29.08 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=11.4
Q ss_pred CcccEEEccCccccccC
Q 038705 120 QRLRVLSLRGYSIFHVP 136 (861)
Q Consensus 120 ~~L~~L~L~~~~i~~lp 136 (861)
++|++|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.96 E-value=0.0068 Score=57.05 Aligned_cols=91 Identities=15% Similarity=0.051 Sum_probs=72.5
Q ss_pred hcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhh
Q 038705 84 LSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVN 163 (861)
Q Consensus 84 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~ 163 (861)
+...++..+|.+..+. ...+-..|+.++.|..||++.|.+..+|..++.+..++.+++..|..+..|.+++
T Consensus 38 i~~~kr~tvld~~s~r---------~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR---------LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hhccceeeeehhhhhH---------HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence 3345566666554322 1223333889999999999999999999999999999999999999999999999
Q ss_pred ccccccEEecCCccchhhch
Q 038705 164 KLWNLHTLLLENCHRLKKLC 183 (861)
Q Consensus 164 ~L~~L~~L~l~~n~~~~~lp 183 (861)
.+.+++++++.++.+...+-
T Consensus 109 k~~~~k~~e~k~~~~~~~~~ 128 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFFRKLF 128 (326)
T ss_pred ccCCcchhhhccCcchHHHH
Confidence 99999999999986544443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.99 E-value=0.12 Score=30.81 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=14.4
Q ss_pred CCccceeeccCCcccccchh
Q 038705 142 LKHLQYLDLSETKIKTLPES 161 (861)
Q Consensus 142 L~~L~~L~Ls~~~i~~lp~~ 161 (861)
|++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677777777777777765
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.99 E-value=0.12 Score=30.81 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=14.4
Q ss_pred CCccceeeccCCcccccchh
Q 038705 142 LKHLQYLDLSETKIKTLPES 161 (861)
Q Consensus 142 L~~L~~L~Ls~~~i~~lp~~ 161 (861)
|++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45677777777777777765
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.91 E-value=0.016 Score=53.77 Aligned_cols=74 Identities=16% Similarity=0.089 Sum_probs=35.8
Q ss_pred CCCcCCCCCCcCCeeEEEEeCCCCCC-CCCCCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEecccccccc
Q 038705 316 TFPTWMGDSSFANLVLLRFEGCHRCT-SLPSVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWE 394 (861)
Q Consensus 316 ~~p~~~~~~~~~~L~~L~L~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 394 (861)
..|.+... -..++.++-+++.+.. .+..+..++.++.|.+.+|....+...+..+ +.+++|+.|+++.|+.++
T Consensus 92 ~lp~~~~~--~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 92 SLPGPNAD--NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred cCCCCCCC--cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeec
Confidence 44544322 2356777777765432 2224555666666666666544444333332 124444444444444444
Q ss_pred c
Q 038705 395 G 395 (861)
Q Consensus 395 ~ 395 (861)
+
T Consensus 166 ~ 166 (221)
T KOG3864|consen 166 D 166 (221)
T ss_pred h
Confidence 3
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.52 E-value=0.37 Score=28.59 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.0
Q ss_pred CCcccEEEccCccccccCccc
Q 038705 119 LQRLRVLSLRGYSIFHVPSSI 139 (861)
Q Consensus 119 l~~L~~L~L~~~~i~~lp~~~ 139 (861)
+++|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468999999999999997653
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.52 E-value=0.37 Score=28.59 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.0
Q ss_pred CCcccEEEccCccccccCccc
Q 038705 119 LQRLRVLSLRGYSIFHVPSSI 139 (861)
Q Consensus 119 l~~L~~L~L~~~~i~~lp~~~ 139 (861)
+++|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468999999999999997653
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.55 E-value=1 Score=26.52 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=13.4
Q ss_pred CccceeeccCCcccccch
Q 038705 143 KHLQYLDLSETKIKTLPE 160 (861)
Q Consensus 143 ~~L~~L~Ls~~~i~~lp~ 160 (861)
.+|++|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357778888888887775
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.65 E-value=1.6 Score=25.90 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=8.2
Q ss_pred CCCCEEeccCCCCccc
Q 038705 792 PSLECLILDDCPKLRY 807 (861)
Q Consensus 792 ~~L~~L~l~~c~~l~~ 807 (861)
++|+.|++++|++++.
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4455555555555443
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.12 E-value=1.9 Score=24.87 Aligned_cols=12 Identities=50% Similarity=0.744 Sum_probs=4.3
Q ss_pred ccceeeccCCcc
Q 038705 144 HLQYLDLSETKI 155 (861)
Q Consensus 144 ~L~~L~Ls~~~i 155 (861)
+|++|+|++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.40 E-value=1.7 Score=25.77 Aligned_cols=17 Identities=53% Similarity=0.759 Sum_probs=10.3
Q ss_pred CCccceeeccCCccccc
Q 038705 142 LKHLQYLDLSETKIKTL 158 (861)
Q Consensus 142 L~~L~~L~Ls~~~i~~l 158 (861)
+++|++|+|++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35666666666666543
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=60.92 E-value=0.71 Score=50.93 Aligned_cols=58 Identities=29% Similarity=0.377 Sum_probs=29.9
Q ss_pred CcccEEEccCcccc-----ccCcccCCCCccceeeccCCccc-----ccchhhh----ccccccEEecCCcc
Q 038705 120 QRLRVLSLRGYSIF-----HVPSSIGDLKHLQYLDLSETKIK-----TLPESVN----KLWNLHTLLLENCH 177 (861)
Q Consensus 120 ~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~~~i~-----~lp~~i~----~L~~L~~L~l~~n~ 177 (861)
..+++|++..|.++ .+...+....+++.++++.|.+. .++..+. ...++++|.+++|.
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~ 215 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG 215 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC
Confidence 45555666655544 23344544566666666666543 1222233 35566666666653
No 88
>PF14162 YozD: YozD-like protein
Probab=54.72 E-value=14 Score=25.66 Aligned_cols=19 Identities=16% Similarity=0.558 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhCCCCcc
Q 038705 2 EDLGRKFFRDLHAKSFFQQ 20 (861)
Q Consensus 2 ed~g~~~~~~L~~~~ll~~ 20 (861)
|++|+=++.||+.||++..
T Consensus 11 EEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 11 EEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHccCCCc
Confidence 7999999999999999965
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.33 E-value=8.2 Score=23.34 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=7.9
Q ss_pred CccceeeccCCccc
Q 038705 143 KHLQYLDLSETKIK 156 (861)
Q Consensus 143 ~~L~~L~Ls~~~i~ 156 (861)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34566666666554
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=32.46 E-value=5.7 Score=44.01 Aligned_cols=137 Identities=21% Similarity=0.077 Sum_probs=91.5
Q ss_pred CCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCcccc-----ccCccc----CCCCccceeeccCCcccc-
Q 038705 88 KRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIF-----HVPSSI----GDLKHLQYLDLSETKIKT- 157 (861)
Q Consensus 88 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-----~lp~~~----~~L~~L~~L~Ls~~~i~~- 157 (861)
..+++|.+.... ..+.....+...+....+++.+|++.|.+. .++..+ ....++++|.+++|.++.
T Consensus 144 ~~l~~L~l~~c~----l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~ 219 (478)
T KOG4308|consen 144 CLLQTLELVSCS----LTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSS 219 (478)
T ss_pred HHHHHHHhhccc----ccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH
Confidence 456666554433 223334556666777999999999999863 224444 468999999999998772
Q ss_pred ----cchhhhcccc-ccEEecCCccchh----hchhhhhhc-cccceeecCCCcccccCc----cccccccccccccceE
Q 038705 158 ----LPESVNKLWN-LHTLLLENCHRLK----KLCANMGSL-IKLHHLKNSNVKALEEMP----KGIGNLTHLLTLSRFV 223 (861)
Q Consensus 158 ----lp~~i~~L~~-L~~L~l~~n~~~~----~lp~~~~~L-~~L~~L~l~~~~~~~~~p----~~i~~l~~L~~L~~~~ 223 (861)
+-..+..... ++.|++..|..-. .+...+..+ ..+++++++.|.+...-. ..+....++++|.++.
T Consensus 220 ~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 220 SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence 2233566666 7779999885432 233445566 678999999998644333 3356677888888877
Q ss_pred ecccC
Q 038705 224 VGKDV 228 (861)
Q Consensus 224 ~~~~~ 228 (861)
+....
T Consensus 300 n~l~~ 304 (478)
T KOG4308|consen 300 NPLTD 304 (478)
T ss_pred Ccccc
Confidence 66544
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.33 E-value=25 Score=38.61 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=8.0
Q ss_pred CcEEeeccccCcch
Q 038705 598 LKYLSVDHCLKLKS 611 (861)
Q Consensus 598 L~~L~l~~~~~l~~ 611 (861)
|++|.+.+|+..+.
T Consensus 272 Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 272 LEELVLEGNPLCTT 285 (585)
T ss_pred HHHeeecCCccccc
Confidence 66666666655443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.29 E-value=23 Score=38.96 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=22.1
Q ss_pred CCcCCccEEEeccccCccc--ccccCCCCCccCEEeecCC
Q 038705 665 FLSSTLTKLWIYECEKLKA--LPNGMHNLTSLQELEIGDL 702 (861)
Q Consensus 665 ~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~n 702 (861)
.+.|.+..+.+++|++... +...-...|+|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3456777888887774321 1111234566777777776
No 93
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=27.50 E-value=77 Score=26.03 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCCCcccCCCCC-ceEEchhHHHH
Q 038705 3 DLGRKFFRDLHAKSFFQQSSCDTS-RFVMHHLINDL 37 (861)
Q Consensus 3 d~g~~~~~~L~~~~ll~~~~~~~~-~~~mHdlv~d~ 37 (861)
++|.+|+++|++++|+...++... .|..-|-=.++
T Consensus 46 ~~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~f 81 (95)
T COG3432 46 KRAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRF 81 (95)
T ss_pred HHHHHHHHHHHhCCCEEeccCCccceEEEChhHHHH
Confidence 679999999999998887664433 45555543433
No 94
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.68 E-value=1.1e+02 Score=20.78 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=14.2
Q ss_pred ccCEEeecCCCCCcccCCCCCCCCccEEEec
Q 038705 693 SLQELEIGDLPSMVYFPEDGFPTNLHSLEIR 723 (861)
Q Consensus 693 ~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~ 723 (861)
+++.|.++++ .-..+....++++|++|.+.
T Consensus 13 ~l~~L~~g~~-fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 13 SLKSLIFGSS-FNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCeEEEECCc-cCccCCCCccCCCceEEEee
Confidence 4555555333 22233334455566666554
Done!