Query 038705
Match_columns 861
No_of_seqs 480 out of 4009
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 03:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.8E-55 1.3E-59 518.8 26.6 665 38-850 31-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-50 7.3E-55 478.1 28.3 602 88-831 50-720 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-42 5.5E-47 407.8 44.3 587 111-843 18-637 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 8.3E-43 2.9E-47 410.2 39.4 573 60-756 22-624 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-40 4.9E-45 385.9 30.9 290 499-829 262-559 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-40 1.4E-44 382.0 33.8 228 499-760 308-539 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.4E-40 8.3E-45 383.9 30.2 518 110-752 25-558 (606)
8 3t6q_A CD180 antigen; protein- 100.0 3.9E-39 1.3E-43 373.8 30.0 517 59-730 29-562 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-37 1.3E-41 368.6 39.9 525 61-756 22-562 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-36 1E-40 360.7 36.4 258 499-779 291-558 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 2.1E-36 7E-41 348.6 33.4 159 597-759 374-536 (570)
12 4eco_A Uncharacterized protein 100.0 4.4E-37 1.5E-41 355.4 22.7 385 152-729 192-601 (636)
13 2z63_A TOLL-like receptor 4, v 100.0 2.3E-35 7.8E-40 339.9 34.5 272 499-809 258-535 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.8E-35 1.3E-39 336.1 31.3 481 110-758 18-514 (549)
15 4ecn_A Leucine-rich repeat pro 100.0 1.2E-35 4.1E-40 347.6 23.9 391 145-730 425-842 (876)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-34 3.9E-39 329.4 28.0 224 499-756 248-483 (520)
17 4eco_A Uncharacterized protein 100.0 4.9E-35 1.7E-39 338.2 22.8 64 298-361 202-284 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-35 1.9E-39 334.8 20.9 128 88-223 26-157 (549)
19 2z7x_B TOLL-like receptor 1, v 100.0 6.7E-34 2.3E-38 323.1 27.7 437 120-731 21-484 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-32 3.6E-37 322.5 31.5 205 498-729 371-581 (635)
21 4ecn_A Leucine-rich repeat pro 100.0 1.1E-32 3.7E-37 322.7 25.7 109 112-221 440-580 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-31 3.4E-36 307.6 26.9 465 86-756 29-512 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-31 8.3E-36 310.9 29.0 246 499-755 329-581 (635)
24 1jl5_A Outer protein YOPM; leu 100.0 4.1E-31 1.4E-35 291.5 22.1 417 118-756 9-431 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-30 5.2E-35 297.8 25.9 249 64-344 32-293 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 7.2E-31 2.5E-35 289.5 21.2 176 499-729 196-371 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 3E-29 1E-33 279.9 28.8 385 123-729 13-409 (455)
28 3bz5_A Internalin-J, INLJ; leu 100.0 9.6E-29 3.3E-33 272.8 22.0 358 115-761 37-394 (457)
29 3bz5_A Internalin-J, INLJ; leu 100.0 4E-28 1.4E-32 267.8 18.7 359 82-688 36-394 (457)
30 1o6v_A Internalin A; bacterial 100.0 4.5E-27 1.5E-31 262.2 27.1 98 116-219 64-161 (466)
31 3v47_A TOLL-like receptor 5B a 100.0 4.2E-27 1.4E-31 262.5 25.8 369 306-758 14-412 (455)
32 1o6v_A Internalin A; bacterial 99.9 2E-25 6.7E-30 248.9 26.6 342 302-753 46-387 (466)
33 2id5_A Lingo-1, leucine rich r 99.9 8E-25 2.7E-29 245.3 28.9 316 305-703 14-331 (477)
34 4fmz_A Internalin; leucine ric 99.9 5.6E-25 1.9E-29 235.6 22.5 82 116-201 40-121 (347)
35 3o6n_A APL1; leucine-rich repe 99.9 6.1E-25 2.1E-29 239.2 18.8 213 86-361 43-259 (390)
36 2id5_A Lingo-1, leucine rich r 99.9 5.1E-24 1.7E-28 238.7 26.4 300 496-828 30-333 (477)
37 3o6n_A APL1; leucine-rich repe 99.9 4.9E-24 1.7E-28 232.0 22.9 212 499-729 142-353 (390)
38 4fmz_A Internalin; leucine ric 99.9 9.1E-24 3.1E-28 226.2 24.3 279 499-827 67-345 (347)
39 3oja_B Anopheles plasmodium-re 99.9 1.9E-24 6.6E-29 248.3 18.5 213 86-361 49-265 (597)
40 3oja_B Anopheles plasmodium-re 99.9 1E-23 3.4E-28 242.3 22.5 212 499-729 148-359 (597)
41 1xku_A Decorin; proteoglycan, 99.9 1.5E-22 5.3E-27 214.7 27.5 297 303-751 32-329 (330)
42 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-22 7E-27 213.8 21.6 208 499-752 124-331 (332)
43 1xku_A Decorin; proteoglycan, 99.9 2.8E-22 9.7E-27 212.6 22.5 195 120-361 31-227 (330)
44 4fcg_A Uncharacterized protein 99.9 4.6E-23 1.6E-27 217.4 15.7 233 118-532 79-311 (328)
45 1ogq_A PGIP-2, polygalacturona 99.9 4.8E-23 1.6E-27 216.0 14.8 232 499-759 51-286 (313)
46 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-21 4.5E-26 207.6 24.3 271 498-826 54-331 (332)
47 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-22 3.8E-27 213.2 14.4 229 499-758 77-308 (313)
48 4fcg_A Uncharacterized protein 99.9 4.1E-21 1.4E-25 202.5 18.1 221 498-751 81-311 (328)
49 3ogk_B Coronatine-insensitive 99.9 3.7E-22 1.3E-26 230.6 8.9 34 498-531 378-412 (592)
50 1z7x_W Ribonuclease inhibitor; 99.8 1.8E-23 6E-28 233.7 -5.2 100 120-219 3-118 (461)
51 3ogk_B Coronatine-insensitive 99.8 1.9E-22 6.4E-27 233.1 1.1 407 82-559 67-524 (592)
52 2z80_A TOLL-like receptor 2, v 99.8 1.7E-20 5.8E-25 200.9 16.2 59 499-559 250-312 (353)
53 3zyj_A Leucine-rich repeat-con 99.8 1.8E-19 6.1E-24 199.1 21.5 227 496-753 62-291 (440)
54 3zyi_A Leucine-rich repeat-con 99.8 1.9E-19 6.7E-24 199.5 21.3 227 496-753 73-302 (452)
55 2z66_A Variable lymphocyte rec 99.8 8.7E-20 3E-24 191.2 17.3 231 496-754 26-261 (306)
56 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-22 5.1E-27 226.1 -4.7 263 62-362 2-296 (461)
57 3o53_A Protein LRIM1, AGAP0063 99.8 2E-20 7E-25 196.6 9.6 241 498-756 34-277 (317)
58 3zyi_A Leucine-rich repeat-con 99.8 4.5E-19 1.5E-23 196.6 20.8 228 593-829 72-304 (452)
59 3o53_A Protein LRIM1, AGAP0063 99.8 7.7E-20 2.6E-24 192.2 13.6 264 499-830 11-277 (317)
60 1ozn_A Reticulon 4 receptor; N 99.8 6.9E-20 2.4E-24 189.7 12.5 237 496-761 30-268 (285)
61 3zyj_A Leucine-rich repeat-con 99.8 7.6E-19 2.6E-23 194.0 20.9 227 594-829 62-293 (440)
62 3g06_A SSPH2 (leucine-rich rep 99.8 3.2E-18 1.1E-22 194.1 26.3 162 572-759 141-302 (622)
63 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-18 5.4E-23 196.6 22.7 87 120-219 40-126 (622)
64 2z80_A TOLL-like receptor 2, v 99.8 9.3E-19 3.2E-23 187.3 19.0 276 302-655 31-312 (353)
65 2z66_A Variable lymphocyte rec 99.8 9E-19 3.1E-23 183.5 18.4 206 499-730 53-263 (306)
66 3oja_A Leucine-rich immune mol 99.8 4.8E-19 1.6E-23 197.1 12.6 234 498-749 34-270 (487)
67 2p1m_B Transport inhibitor res 99.8 7.8E-21 2.7E-25 219.7 -2.0 407 82-559 60-517 (594)
68 1ozn_A Reticulon 4 receptor; N 99.8 3E-18 1E-22 177.4 17.6 159 594-755 30-191 (285)
69 1wwl_A Monocyte differentiatio 99.8 2.6E-19 8.8E-24 187.8 6.6 152 596-753 149-308 (312)
70 1wwl_A Monocyte differentiatio 99.8 2.6E-19 9E-24 187.7 5.4 203 118-361 93-307 (312)
71 2p1m_B Transport inhibitor res 99.8 2.1E-20 7.3E-25 216.0 -3.8 116 299-419 63-194 (594)
72 2xwt_C Thyrotropin receptor; s 99.7 2.1E-17 7.2E-22 166.0 18.0 209 582-827 20-238 (239)
73 3oja_A Leucine-rich immune mol 99.7 1.5E-17 5.1E-22 185.1 16.6 199 520-759 32-231 (487)
74 2xwt_C Thyrotropin receptor; s 99.7 4.2E-17 1.4E-21 163.8 17.8 205 492-725 25-236 (239)
75 2z62_A TOLL-like receptor 4, v 99.7 4.3E-17 1.5E-21 167.8 17.7 203 593-803 25-235 (276)
76 2z62_A TOLL-like receptor 4, v 99.7 2.1E-17 7.2E-22 170.1 15.1 206 496-754 26-237 (276)
77 2o6q_A Variable lymphocyte rec 99.7 3.4E-16 1.2E-20 160.2 19.8 177 499-727 38-217 (270)
78 3rfs_A Internalin B, repeat mo 99.7 1.3E-16 4.3E-21 163.6 15.4 202 518-759 37-240 (272)
79 1p9a_G Platelet glycoprotein I 99.7 4.7E-16 1.6E-20 160.5 19.6 176 498-727 31-207 (290)
80 1p9a_G Platelet glycoprotein I 99.7 1.1E-15 3.8E-20 157.7 21.3 156 597-759 32-189 (290)
81 2o6q_A Variable lymphocyte rec 99.7 9.2E-16 3.1E-20 157.0 20.6 154 597-753 62-217 (270)
82 4glp_A Monocyte differentiatio 99.7 2.9E-16 9.8E-21 164.4 14.4 226 598-827 66-306 (310)
83 3rfs_A Internalin B, repeat mo 99.7 5.1E-16 1.8E-20 159.0 15.8 207 498-742 41-247 (272)
84 4glp_A Monocyte differentiatio 99.7 2.4E-16 8.3E-21 165.0 13.2 227 499-753 65-306 (310)
85 4ay9_X Follicle-stimulating ho 99.7 1.4E-15 4.7E-20 162.1 18.9 226 496-751 28-256 (350)
86 4ay9_X Follicle-stimulating ho 99.7 2.8E-15 9.7E-20 159.6 19.3 220 595-823 29-254 (350)
87 3m19_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 150.5 17.9 159 594-755 33-193 (251)
88 1h6u_A Internalin H; cell adhe 99.6 2E-15 7E-20 157.4 15.7 144 597-753 86-229 (308)
89 1h6u_A Internalin H; cell adhe 99.6 2.4E-15 8.2E-20 156.8 15.3 191 498-729 41-231 (308)
90 2ast_B S-phase kinase-associat 99.6 7.2E-17 2.5E-21 171.6 3.8 31 499-532 48-80 (336)
91 2ast_B S-phase kinase-associat 99.6 2.1E-17 7.3E-22 175.7 -0.4 256 89-432 48-315 (336)
92 3m19_A Variable lymphocyte rec 99.6 1.9E-14 6.4E-19 145.5 18.2 151 597-753 15-167 (251)
93 2ca6_A RAN GTPase-activating p 99.6 1.5E-16 5E-21 172.6 -0.4 131 82-220 26-193 (386)
94 2ca6_A RAN GTPase-activating p 99.6 7.6E-16 2.6E-20 166.9 4.0 153 63-220 32-222 (386)
95 3goz_A Leucine-rich repeat-con 99.5 7.2E-16 2.5E-20 165.2 1.6 231 498-753 22-296 (362)
96 4ezg_A Putative uncharacterize 99.5 2.3E-14 7.8E-19 138.8 11.7 148 597-752 45-192 (197)
97 3cvr_A Invasion plasmid antige 99.5 7.1E-14 2.4E-18 156.4 16.2 182 523-759 60-248 (571)
98 3goz_A Leucine-rich repeat-con 99.5 3.1E-15 1.1E-19 160.3 4.1 92 111-202 13-121 (362)
99 2o6s_A Variable lymphocyte rec 99.5 9.4E-14 3.2E-18 135.9 13.5 157 594-760 26-184 (208)
100 1h6t_A Internalin B; cell adhe 99.5 4.4E-14 1.5E-18 145.8 10.5 170 116-361 42-211 (291)
101 2v9t_B SLIT homolog 2 protein 99.5 3.2E-13 1.1E-17 132.9 15.6 148 600-753 15-164 (220)
102 3e6j_A Variable lymphocyte rec 99.5 4.3E-13 1.5E-17 133.0 14.6 150 598-754 21-172 (229)
103 1h6t_A Internalin B; cell adhe 99.5 1.9E-13 6.5E-18 141.1 12.4 98 597-702 91-188 (291)
104 3cvr_A Invasion plasmid antige 99.5 3.2E-13 1.1E-17 151.1 14.4 182 499-734 60-249 (571)
105 2v70_A SLIT-2, SLIT homolog 2 99.5 7E-13 2.4E-17 130.5 15.0 151 598-754 13-166 (220)
106 2xot_A Amphoterin-induced prot 99.5 2.9E-13 9.8E-18 144.7 13.1 159 593-754 36-202 (361)
107 4ezg_A Putative uncharacterize 99.4 3.4E-13 1.2E-17 130.4 11.7 152 518-702 40-191 (197)
108 2o6s_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 128.5 14.1 150 598-754 9-161 (208)
109 2v9t_B SLIT homolog 2 protein 99.4 2.2E-12 7.4E-17 127.0 14.8 134 594-729 30-166 (220)
110 1m9s_A Internalin B; cell inva 99.4 5.5E-13 1.9E-17 151.1 11.8 98 597-702 110-207 (605)
111 1xeu_A Internalin C; cellular 99.4 1.6E-13 5.6E-18 139.1 6.2 166 119-361 18-183 (263)
112 3e6j_A Variable lymphocyte rec 99.4 3.1E-12 1.1E-16 126.8 14.4 136 593-730 37-174 (229)
113 2je0_A Acidic leucine-rich nuc 99.4 4.9E-13 1.7E-17 122.9 7.9 126 86-221 15-147 (149)
114 1m9s_A Internalin B; cell inva 99.4 8.3E-13 2.8E-17 149.6 11.1 170 545-753 40-209 (605)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 6.3E-12 2.1E-16 123.6 15.5 105 598-702 59-163 (220)
116 2ell_A Acidic leucine-rich nuc 99.4 1E-12 3.5E-17 123.5 8.7 128 87-225 23-158 (168)
117 1xeu_A Internalin C; cellular 99.4 3.1E-12 1.1E-16 129.6 12.9 143 597-753 42-184 (263)
118 4b8c_D Glucose-repressible alc 99.4 8.6E-13 2.9E-17 153.6 9.1 154 62-224 172-326 (727)
119 2ell_A Acidic leucine-rich nuc 99.3 1E-12 3.5E-17 123.5 7.7 139 60-209 21-165 (168)
120 1dce_A Protein (RAB geranylger 99.3 9.1E-14 3.1E-18 156.5 0.1 201 139-425 345-548 (567)
121 2xot_A Amphoterin-induced prot 99.3 5.4E-12 1.9E-16 134.7 12.5 155 598-759 20-180 (361)
122 1a9n_A U2A', U2A'; complex (nu 99.3 2.2E-12 7.5E-17 122.1 8.1 131 82-225 13-151 (176)
123 2je0_A Acidic leucine-rich nuc 99.3 2.2E-12 7.7E-17 118.4 6.3 106 117-224 14-123 (149)
124 1w8a_A SLIT protein; signaling 99.3 2.5E-12 8.5E-17 123.6 6.4 86 116-201 50-137 (192)
125 2wfh_A SLIT homolog 2 protein 99.3 5.8E-12 2E-16 120.9 7.6 100 121-221 32-133 (193)
126 4b8c_D Glucose-repressible alc 99.2 1.2E-12 4.1E-17 152.4 2.1 123 81-213 217-339 (727)
127 1dce_A Protein (RAB geranylger 99.2 1.3E-11 4.6E-16 138.9 8.7 105 121-228 442-547 (567)
128 3sb4_A Hypothetical leucine ri 99.2 4.2E-11 1.4E-15 126.1 11.5 216 499-722 102-328 (329)
129 1w8a_A SLIT protein; signaling 99.2 9.4E-11 3.2E-15 112.4 12.8 101 599-702 11-112 (192)
130 1a9n_A U2A', U2A'; complex (nu 99.2 2.1E-11 7.3E-16 115.3 7.3 127 61-201 17-151 (176)
131 2wfh_A SLIT homolog 2 protein 99.2 1.4E-10 4.7E-15 111.2 12.7 105 597-702 32-136 (193)
132 3sb4_A Hypothetical leucine ri 99.2 1.9E-10 6.5E-15 121.1 14.8 215 521-748 100-328 (329)
133 1ds9_A Outer arm dynein; leuci 99.2 1.2E-12 4.2E-17 126.6 -2.0 126 83-220 43-180 (198)
134 2o6r_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 107.2 13.2 127 598-728 9-137 (177)
135 1ds9_A Outer arm dynein; leuci 99.1 2E-12 6.8E-17 125.1 -3.7 110 111-224 39-150 (198)
136 2r9u_A Variable lymphocyte rec 99.1 9.8E-11 3.4E-15 110.0 7.3 102 110-214 25-128 (174)
137 3g39_A Variable lymphocyte rec 99.1 1.3E-10 4.4E-15 108.9 6.8 82 120-201 30-113 (170)
138 2o6r_A Variable lymphocyte rec 99.1 1E-09 3.5E-14 103.8 13.1 113 594-706 26-138 (177)
139 2r9u_A Variable lymphocyte rec 99.1 1.6E-10 5.5E-15 108.6 6.8 101 122-225 14-116 (174)
140 4fdw_A Leucine rich hypothetic 99.0 4.9E-08 1.7E-12 104.7 24.0 211 499-751 136-355 (401)
141 3g39_A Variable lymphocyte rec 98.9 3.2E-09 1.1E-13 99.3 10.2 103 598-703 11-113 (170)
142 4fdw_A Leucine rich hypothetic 98.9 1.9E-07 6.6E-12 100.1 24.3 208 616-844 176-395 (401)
143 4fs7_A Uncharacterized protein 98.8 3.3E-07 1.1E-11 98.9 24.1 125 615-751 248-376 (394)
144 2ifg_A High affinity nerve gro 98.8 4.4E-09 1.5E-13 111.7 5.5 88 111-201 23-114 (347)
145 4fs7_A Uncharacterized protein 98.7 8.8E-07 3E-11 95.5 23.3 298 499-825 72-376 (394)
146 2ifg_A High affinity nerve gro 98.5 1.9E-07 6.5E-12 99.0 10.3 100 602-703 14-114 (347)
147 3un9_A NLR family member X1; l 98.5 1.9E-08 6.6E-13 106.8 1.8 155 62-225 71-250 (372)
148 4gt6_A Cell surface protein; l 98.5 8.2E-06 2.8E-10 87.8 21.5 107 637-751 258-367 (394)
149 3un9_A NLR family member X1; l 98.4 9.8E-08 3.3E-12 101.4 3.8 134 63-204 101-253 (372)
150 4gt6_A Cell surface protein; l 98.4 7.7E-05 2.6E-09 80.2 25.7 126 614-751 259-388 (394)
151 2ra8_A Uncharacterized protein 98.2 1E-06 3.5E-11 92.6 6.4 62 667-729 251-321 (362)
152 3e4g_A ATP synthase subunit S, 98.2 4.4E-07 1.5E-11 83.1 2.9 96 660-756 53-154 (176)
153 4h09_A Hypothetical leucine ri 98.1 0.0004 1.4E-08 74.1 24.9 103 640-749 213-318 (379)
154 4h09_A Hypothetical leucine ri 98.1 0.00069 2.4E-08 72.3 26.4 133 616-759 213-349 (379)
155 2ra8_A Uncharacterized protein 98.1 1.3E-06 4.6E-11 91.7 4.9 136 612-752 164-318 (362)
156 3e4g_A ATP synthase subunit S, 98.1 7.6E-07 2.6E-11 81.5 1.8 90 716-807 62-154 (176)
157 1io0_A Tropomodulin; LRR prote 98.1 3.6E-06 1.2E-10 79.5 5.9 116 82-201 30-162 (185)
158 3rw6_A Nuclear RNA export fact 98.0 5.5E-06 1.9E-10 82.2 5.8 104 116-221 137-258 (267)
159 3rw6_A Nuclear RNA export fact 97.9 1.9E-06 6.5E-11 85.5 1.0 81 116-197 166-258 (267)
160 1io0_A Tropomodulin; LRR prote 97.9 3.8E-06 1.3E-10 79.3 3.0 108 114-221 30-158 (185)
161 2a5y_B CED-4; apoptosis; HET: 97.1 0.00017 5.9E-09 80.9 2.9 46 1-47 427-473 (549)
162 3rfe_A Platelet glycoprotein I 96.6 0.0023 7.8E-08 55.8 5.6 54 123-178 11-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 94.9 0.04 1.4E-06 51.3 6.3 60 116-175 66-135 (197)
164 1pgv_A TMD-1, tropomodulin TMD 94.7 0.031 1E-06 52.1 5.0 86 116-201 37-137 (197)
165 3rfe_A Platelet glycoprotein I 93.8 0.047 1.6E-06 47.3 4.0 54 146-201 11-66 (130)
166 3sfz_A APAF-1, apoptotic pepti 91.0 0.12 4.1E-06 64.5 4.2 45 2-46 408-453 (1249)
167 1vt4_I APAF-1 related killer D 83.2 0.58 2E-05 54.8 3.3 36 3-39 402-437 (1221)
168 1z6t_A APAF-1, apoptotic prote 82.1 0.77 2.6E-05 51.7 3.8 41 3-43 409-450 (591)
169 2lz0_A Uncharacterized protein 25.4 51 0.0017 26.3 3.2 43 513-558 11-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-55 Score=518.82 Aligned_cols=665 Identities=16% Similarity=0.084 Sum_probs=353.5
Q ss_pred HHHHhccceEEecccccCccccCCCCceeEEEEEecCCCcc--chhhhhcccCCccEEeecccccCcCCcccchhhhhhc
Q 038705 38 AQWAAGDIYFRMGDVLEDHKRHRFSENLRHFSYLRGGYDGL--KMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYM 115 (861)
Q Consensus 38 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsl~~~~~~~~--~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~ 115 (861)
+.|.+...|+.+.+. .++ .++++.+++.+..+... ...+++.++++|+.+.+..+. ...+|+.
T Consensus 31 ~~W~~~~~~C~w~gv-----~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~---------~~~l~~~ 95 (768)
T 3rgz_A 31 PDWSSNKNPCTFDGV-----TCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH---------INGSVSG 95 (768)
T ss_dssp TTCCTTSCGGGSTTE-----EEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSC---------EEECCCC
T ss_pred cCCCCCCCCcCCcce-----EEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCC---------cCCCchh
Confidence 445444555555431 122 56788888877654421 023566677777777653321 1234456
Q ss_pred cCCCCcccEEEccCcccc-ccCc--ccCCCCccceeeccCCccc-ccchhh-hccccccEEecCCccchhhchhh---hh
Q 038705 116 LFKLQRLRVLSLRGYSIF-HVPS--SIGDLKHLQYLDLSETKIK-TLPESV-NKLWNLHTLLLENCHRLKKLCAN---MG 187 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~-~lp~--~~~~L~~L~~L~Ls~~~i~-~lp~~i-~~L~~L~~L~l~~n~~~~~lp~~---~~ 187 (861)
|.++++|++|+|++|.++ .+|. .++++++|++|+|++|.+. .+|..+ +++++|++||+++|.+.+..|.. ++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175 (768)
T ss_dssp CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhc
Confidence 888888888888888876 4566 7888888888888888876 555554 78888888888888776766666 67
Q ss_pred hccccceeecCCCcccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcc
Q 038705 188 SLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEK 267 (861)
Q Consensus 188 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 267 (861)
++++|++|++++|.+.+..| ++++++|++|++..+..... +.. +..+
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~--~~~-----------------------------l~~l 222 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG--IPF-----------------------------LGDC 222 (768)
T ss_dssp CCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSC--CCB-----------------------------CTTC
T ss_pred cCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCC--Ccc-----------------------------cccC
Confidence 88888888888888555444 37777888776654432211 111 3344
Q ss_pred cCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCC-CCCcCCCCCCcCCeeEEEEeCCCCCCCCC-C
Q 038705 268 RNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGT-TFPTWMGDSSFANLVLLRFEGCHRCTSLP-S 345 (861)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~~~-~ 345 (861)
++|++|++++|...+. ....+..+++|++|++++|... .+|.+ .+++|++|++++|.+.+.+| .
T Consensus 223 ~~L~~L~Ls~n~l~~~----------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~ 288 (768)
T 3rgz_A 223 SALQHLDISGNKLSGD----------FSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDF 288 (768)
T ss_dssp CSCCEEECCSSCCCSC----------HHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCC
T ss_pred CCCCEEECcCCcCCCc----------ccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCHH
Confidence 5555555555443221 1223455566666666666543 22322 36677777777777665555 3
Q ss_pred CCC-CCCcceeeeccccceeEECccccCCcCcCCCCCcceEeccccccccccccCC-CCCcccccCccceEeccCCCCCc
Q 038705 346 VGQ-LPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHG-SGKEVNVFPQLRELSLIGCPKLQ 423 (861)
Q Consensus 346 l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~ 423 (861)
+.. +++|++|++++|.....++..+.. +++|++|++++ +.+.+..+.. +.. +++|++|++++ +.++
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~L~~-n~l~~~ip~~~l~~----l~~L~~L~Ls~-n~l~ 356 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVPPFFGS------CSLLESLALSS-NNFSGELPMDTLLK----MRGLKVLDLSF-NEFS 356 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCCGGGGG------CTTCCEEECCS-SEEEEECCHHHHTT----CTTCCEEECCS-SEEE
T ss_pred HHhhcCcCCEEECcCCcCCCccchHHhc------CCCccEEECCC-CcccCcCCHHHHhc----CCCCCEEeCcC-CccC
Confidence 444 377777777766554444444332 66777777776 3444333222 333 67777777777 3565
Q ss_pred CCCCCCCC----CcceEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCC-CCC
Q 038705 424 GRLPECLS----SLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPV-FPC 498 (861)
Q Consensus 424 ~~~p~~l~----~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~ 498 (861)
+.+|..+. +|+.|+++++......... +.. ..+
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~------------------------------------------~~~~~~~ 394 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPN------------------------------------------LCQNPKN 394 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTT------------------------------------------TTCSTTC
T ss_pred ccccHHHHhhhcCCcEEEccCCCcCCCcChh------------------------------------------hhhcccC
Confidence 56665432 3444444433211000000 000 003
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCC-CCCCCccEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKN-ELPATLEHL 577 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L 577 (861)
+|++|++++|.+.+.+|..+..+++|+.|++++| .+.......+..+++|++|++++|. +...++.. ..++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~----- 466 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN--YLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQELMYVK----- 466 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS--EEESCCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCT-----
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCC--cccCcccHHHhcCCCCCEEECCCCc-ccCcCCHHHcCCC-----
Confidence 5666666666666666666666666666666666 2222222223455566666666653 22211111 1122
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCc
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNL 657 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 657 (861)
+|++|++++|...+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|...
T Consensus 467 -------------------~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 467 -------------------TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp -------------------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred -------------------CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 3444444444333333444444444444444444444444444444444444444444333
Q ss_pred eecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEE----------------------------------------
Q 038705 658 ISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQEL---------------------------------------- 697 (861)
Q Consensus 658 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L---------------------------------------- 697 (861)
+.+|..+..+++|+.|++++|++.+.+|..+.....+..+
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 3444433344444444444444444443333222222111
Q ss_pred ------eecCCCCCcccCCC-CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCc
Q 038705 698 ------EIGDLPSMVYFPED-GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASL 770 (861)
Q Consensus 698 ------~l~~n~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 770 (861)
++..+..-..+|.. ..+++|+.||+++|++.+.+|.. ++.+++|+.|++++|...+.+|.... -+++|
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~--l~~l~~L~~L~Ls~N~l~g~ip~~l~---~L~~L 682 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE--IGSMPYLFILNLGHNDISGSIPDEVG---DLRGL 682 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG--GGGCTTCCEEECCSSCCCSCCCGGGG---GCTTC
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHH--HhccccCCEEeCcCCccCCCCChHHh---CCCCC
Confidence 11111111111111 22455666666666666555554 56666666666666655555555432 22455
Q ss_pred cEEEeccCCCCcccccCCCCCCCCCEEeccCCCCcccCCCCCCccccceeeccCCcchHH----HHhccCCccccccccC
Q 038705 771 TKLEIVRFSNLEYLSSVGESLPSLECLILDDCPKLRYFPDKGLPPSLLQLHISNCPLIEE----SCRKDGGQYWHLISDI 846 (861)
Q Consensus 771 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c~~l~~----~~~~~~~~~~~~~~~~ 846 (861)
+.|+++++.--..++.....+++|+.|++++|+--+.+|..+.+.++....+.+||.++- .|....+.+|++++|+
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~ 762 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRS 762 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC----------
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCc
Confidence 555555543333344334778889999999997777888877777787788888876542 5999999999999999
Q ss_pred ceEE
Q 038705 847 PCVY 850 (861)
Q Consensus 847 ~~v~ 850 (861)
+.++
T Consensus 763 ~~~~ 766 (768)
T 3rgz_A 763 HHHH 766 (768)
T ss_dssp ----
T ss_pred cccC
Confidence 9775
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-50 Score=478.14 Aligned_cols=602 Identities=18% Similarity=0.110 Sum_probs=396.4
Q ss_pred CCccEEeecccccCcCCcccchhh---hhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCccc-ccch--h
Q 038705 88 KRLRTFLPLVLSNTWSGKAYLAHS---VLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIK-TLPE--S 161 (861)
Q Consensus 88 ~~Lr~L~l~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~-~lp~--~ 161 (861)
.+++.|.+.+.. +... +++.|..+++|++++++.+.+..+|..|+.+++|++|+|++|.+. .+|. .
T Consensus 50 ~~v~~L~L~~~~--------l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (768)
T 3rgz_A 50 DKVTSIDLSSKP--------LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS 121 (768)
T ss_dssp TEEEEEECTTSC--------CCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG
T ss_pred CcEEEEECCCCC--------cCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHH
Confidence 467777665422 2233 676788889999999998888778888899999999999999887 5777 7
Q ss_pred hhccccccEEecCCccchhhchhhh-hhccccceeecCCCcccccCccc---cccccccccccceEecccCCCCcccccc
Q 038705 162 VNKLWNLHTLLLENCHRLKKLCANM-GSLIKLHHLKNSNVKALEEMPKG---IGNLTHLLTLSRFVVGKDVGSGLRTLKL 237 (861)
Q Consensus 162 i~~L~~L~~L~l~~n~~~~~lp~~~-~~L~~L~~L~l~~~~~~~~~p~~---i~~l~~L~~L~~~~~~~~~~~~~~~l~~ 237 (861)
++++++|++|++++|.+.+..|..+ +++++|++|++++|.+.+..|.. ++++++|++|++..+...
T Consensus 122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---------- 191 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS---------- 191 (768)
T ss_dssp GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEE----------
T ss_pred HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccc----------
Confidence 8999999999999887777777665 78889999999998866666655 677777777754332110
Q ss_pred cccccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCC
Q 038705 238 LKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTF 317 (861)
Q Consensus 238 l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 317 (861)
... ....+++|++|++++|.....
T Consensus 192 --------------------------------------------~~~------------~~~~l~~L~~L~Ls~n~l~~~ 215 (768)
T 3rgz_A 192 --------------------------------------------GDV------------DVSRCVNLEFLDVSSNNFSTG 215 (768)
T ss_dssp --------------------------------------------SCC------------BCTTCTTCCEEECCSSCCCSC
T ss_pred --------------------------------------------ccC------------CcccCCcCCEEECcCCcCCCC
Confidence 000 012345566666666554433
Q ss_pred CcCCCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEecccccccccc
Q 038705 318 PTWMGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGW 396 (861)
Q Consensus 318 p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 396 (861)
+..+ ..+++|++|++++|.+.+.+| .++.+++|++|++++|.....++.. .+++|++|++++ +.+.+.
T Consensus 216 ~~~l--~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~l~~L~~L~L~~-n~l~~~ 284 (768)
T 3rgz_A 216 IPFL--GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--------PLKSLQYLSLAE-NKFTGE 284 (768)
T ss_dssp CCBC--TTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--------CCTTCCEEECCS-SEEEES
T ss_pred Cccc--ccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--------ccCCCCEEECcC-CccCCc
Confidence 2223 236666666666666665555 5666667777777666543322211 266677777766 345544
Q ss_pred ccCCCCCcccccCccceEeccCCCCCcCCCCCC---CCCcceEEEeccCCC---cc-cCCCCCccceEEEccCCCCcccc
Q 038705 397 IPHGSGKEVNVFPQLRELSLIGCPKLQGRLPEC---LSSLERLVVRGCEQL---TV-LVSSLPKLCKLEIGGCKGMAWRS 469 (861)
Q Consensus 397 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~---l~~L~~L~l~~~~~l---~~-~~~~~~~L~~L~l~~~~~~~~~~ 469 (861)
.+..+... +++|++|++++ +.+++.+|.. +++|+.|++.+|... +. .+..++
T Consensus 285 ip~~~~~~---~~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~----------------- 343 (768)
T 3rgz_A 285 IPDFLSGA---CDTLTGLDLSG-NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR----------------- 343 (768)
T ss_dssp CCCCSCTT---CTTCSEEECCS-SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT-----------------
T ss_pred cCHHHHhh---cCcCCEEECcC-CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC-----------------
Confidence 44444331 46777777777 3555555532 233333333333211 00 122233
Q ss_pred cccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccc-cccEEEEecccccccccccccccCCC
Q 038705 470 TNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLG-FLREMEIYGNLIKEESIQSSSTRYTS 548 (861)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~ 548 (861)
+|++|++++|.+.+.+|..+..++ +|+.|++++|.......+......++
T Consensus 344 -----------------------------~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 344 -----------------------------GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp -----------------------------TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred -----------------------------CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 555555555555555555555554 55555555552221111111111144
Q ss_pred CccEEEecCCCCccccCCC-CCCCCCccEEEEecCCCcccccc-cCCCcccCcEEeeccccCcchhhhhccCCCCccEEe
Q 038705 549 LLEYLYIDDCASLTSLLPK-NELPATLEHLHVKSCGNLAFLSL-VGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVK 626 (861)
Q Consensus 549 ~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 626 (861)
+|++|++++| .++..++. ...+++|+.|+++++..-..+|. .+.++ +|++|++++|...+.+|..+..+++|++|+
T Consensus 395 ~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 395 TLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp CCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 5555555555 23322222 12245555555555432222221 22344 799999999988888999999999999999
Q ss_pred eccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCc
Q 038705 627 ISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMV 706 (861)
Q Consensus 627 L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~ 706 (861)
+++|.+.+.+|..+.++++|++|++++|...+.+|.++..+++|++|++++|.+.+.+|..++.+++|++|++++|+...
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 99999999999999999999999999998888899988899999999999999999999999999999999999997666
Q ss_pred ccCCCCC-CCCc----------------------------------------------cEEEecCccCcccccccccCCc
Q 038705 707 YFPEDGF-PTNL----------------------------------------------HSLEIRDMKMWKSLIEWEPLNR 739 (861)
Q Consensus 707 ~~~~~~~-~~~L----------------------------------------------~~L~l~~~~~~~~~~~~~~~~~ 739 (861)
.+|...+ ...+ +.++++.+.+.+.++.. +..
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~--~~~ 630 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT--FDN 630 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS--CSS
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh--hhc
Confidence 6664311 1111 12223334444444444 788
Q ss_pred CCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCCCCCCCCCEEeccCCCCcccCCC-CCCccccc
Q 038705 740 FTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVGESLPSLECLILDDCPKLRYFPD-KGLPPSLL 818 (861)
Q Consensus 740 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~sL~ 818 (861)
+++|+.|++++|...+.+|.+.. .+++|+.|+++++.--..++.....+++|+.|++++|..-+.+|. .+.+++|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIG---SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGG---GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred cccccEEECcCCcccccCCHHHh---ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 89999999999988888887653 347888999888755556665568899999999999966667775 34578899
Q ss_pred eeeccCCcchHHH
Q 038705 819 QLHISNCPLIEES 831 (861)
Q Consensus 819 ~L~l~~c~~l~~~ 831 (861)
+|++++|+.-..+
T Consensus 708 ~L~ls~N~l~g~i 720 (768)
T 3rgz_A 708 EIDLSNNNLSGPI 720 (768)
T ss_dssp EEECCSSEEEEEC
T ss_pred EEECcCCcccccC
Confidence 9999999876543
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-42 Score=407.78 Aligned_cols=587 Identities=17% Similarity=0.128 Sum_probs=356.5
Q ss_pred hhhhccCCCCcccEEEccCccccccCc-ccCCCCccceeeccCCccccc-chhhhccccccEEecCCccchhhchh-hhh
Q 038705 111 SVLYMLFKLQRLRVLSLRGYSIFHVPS-SIGDLKHLQYLDLSETKIKTL-PESVNKLWNLHTLLLENCHRLKKLCA-NMG 187 (861)
Q Consensus 111 ~~~~~~~~l~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~n~~~~~lp~-~~~ 187 (861)
.+|..+. +++++|+|++|.++.+|. +|+++++|++|++++|.++.+ |..|+++++|++|++++|.+. .+|. .|+
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~ 94 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFA 94 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhc
Confidence 4554443 567777777777776643 467777777777777777655 445777777777777776433 3443 467
Q ss_pred hccccceeecCCCcccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcc
Q 038705 188 SLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEK 267 (861)
Q Consensus 188 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 267 (861)
++++|++|++++|.+.+..|..++++++|++|++..+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n------------------------------------------- 131 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN------------------------------------------- 131 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-------------------------------------------
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-------------------------------------------
Confidence 7777777777777643333345666666666643222
Q ss_pred cCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcC-CCCCCcCCeeEEEEeCCCCCCCCC-C
Q 038705 268 RNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTW-MGDSSFANLVLLRFEGCHRCTSLP-S 345 (861)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~L~~~~~~~~~~-~ 345 (861)
...... ...+..+++|++|++++|....++.. +....+++|+.|++++|.+.+..| .
T Consensus 132 -----------~l~~~~----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 190 (680)
T 1ziw_A 132 -----------GLSSTK----------LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190 (680)
T ss_dssp -----------CCSCCC----------CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred -----------cccccC----------chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence 111100 01134456677777777665554432 111124677777777777766555 5
Q ss_pred CCCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCC
Q 038705 346 VGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGR 425 (861)
Q Consensus 346 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 425 (861)
++.+++|+.|++.++............ ....++|+.|++++ +.+.+..+..+.... .++|++|++++ +.+++.
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~---~l~~~~L~~L~L~~-n~l~~~~~~~~~~l~--~~~L~~L~Ls~-n~l~~~ 263 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCL---ELANTSIRNLSLSN-SQLSTTSNTTFLGLK--WTNLTMLDLSY-NNLNVV 263 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHH---HHTTSCCCEEECTT-SCCCEECTTTTGGGG--GSCCCEEECTT-SCCCEE
T ss_pred hhhhhhhhhhhccccccChhhHHHHHH---HhhhccccEEEccC-CcccccChhHhhccC--cCCCCEEECCC-CCcCcc
Confidence 666777777777665321110000000 00124555555555 344444443333300 12355555555 234322
Q ss_pred CCCCCCCcceEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEe
Q 038705 426 LPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLEL 505 (861)
Q Consensus 426 ~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l 505 (861)
.|..+ ..++ +|++|++
T Consensus 264 ~~~~~------------------~~l~----------------------------------------------~L~~L~L 279 (680)
T 1ziw_A 264 GNDSF------------------AWLP----------------------------------------------QLEYFFL 279 (680)
T ss_dssp CTTTT------------------TTCT----------------------------------------------TCCEEEC
T ss_pred Ccccc------------------cCcc----------------------------------------------cccEeeC
Confidence 22211 1122 4555555
Q ss_pred ecccccccchhhhhccccccEEEEeccccc-------ccccccccccCCCCccEEEecCCCCccccCCC-CCCCCCccEE
Q 038705 506 SQCRYLVKLPQALLSLGFLREMEIYGNLIK-------EESIQSSSTRYTSLLEYLYIDDCASLTSLLPK-NELPATLEHL 577 (861)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L 577 (861)
++|.+.+..+..+.++++|+.|++++|... +..+....+..+++|++|++++| .+..+.+. ...+++|++|
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 358 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYL 358 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEE
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEE
Confidence 555555555555555555555555544110 01111223344555555555555 23332221 1224555555
Q ss_pred EEecCC-Ccccccc---cCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCccccc-ccccCCCCCcEEeec
Q 038705 578 HVKSCG-NLAFLSL---VGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLP-DGLLKLNHLQEIFIS 652 (861)
Q Consensus 578 ~l~~~~-~l~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~ 652 (861)
+++++. .+..++. .....++|+.|++++|...+..|..+..+++|+.|++++|.+.+.+| ..+.++++|++|+++
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence 555442 1111110 00011369999999997777778888899999999999999887775 678889999999999
Q ss_pred cCCCceecCCCCCCcCCccEEEeccccCc--ccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCc
Q 038705 653 HCPNLISFPDGGFLSSTLTKLWIYECEKL--KALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMW 728 (861)
Q Consensus 653 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~ 728 (861)
+|......+..+..+++|+.|++++|... +.+|..+.++++|++|++++| .++.++.. ..+++|++|++++|.+.
T Consensus 439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCcc
Confidence 99766666667778899999999998864 567888999999999999999 56666655 44789999999999887
Q ss_pred ccccc------cccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCC-CCCCCCCEEeccC
Q 038705 729 KSLIE------WEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVG-ESLPSLECLILDD 801 (861)
Q Consensus 729 ~~~~~------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~ 801 (861)
..... ...+..+++|+.|++++|. +..+|.+.. .-+++|+.|++.+. +++.++... ..+++|+.|++++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF--KDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc--ccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCC
Confidence 53211 1126888999999999984 556765432 23478888888764 566666554 6889999999999
Q ss_pred CCCcccCCCCC---CccccceeeccCCcchHHHHhc-cCCcccccc
Q 038705 802 CPKLRYFPDKG---LPPSLLQLHISNCPLIEESCRK-DGGQYWHLI 843 (861)
Q Consensus 802 c~~l~~~~~~~---~~~sL~~L~l~~c~~l~~~~~~-~~~~~~~~~ 843 (861)
| +++.++... .+++|++|++++||..+. |.. .+...|.+-
T Consensus 594 N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~-c~~~~~~~~~~~~ 637 (680)
T 1ziw_A 594 N-LITSVEKKVFGPAFRNLTELDMRFNPFDCT-CESIAWFVNWINE 637 (680)
T ss_dssp S-CCCBCCHHHHHHHHTTCSEEECTTCCCCBC-CCCCSSEECCSSC
T ss_pred C-cCCccChhHhcccccccCEEEccCCCcccC-CccHHHHHHHHHh
Confidence 8 677776532 357899999999998775 664 555566543
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.3e-43 Score=410.18 Aligned_cols=573 Identities=15% Similarity=0.082 Sum_probs=385.6
Q ss_pred CCCCceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCc-c
Q 038705 60 RFSENLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPS-S 138 (861)
Q Consensus 60 ~~~~~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~-~ 138 (861)
..+.++++|.+.++.+..+. ...|.++++||+|.+.++. +....|..|.++++|++|+|++|.++.+|. +
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 92 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNT--------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKT 92 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSC--------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCc--------cCccCHHHHhcccCcCEEECCCCccCccChhh
Confidence 45678999999988776542 3568888999999885533 233333348889999999999999988865 6
Q ss_pred cCCCCccceeeccCCcccccc-hhhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCccccc--cccc
Q 038705 139 IGDLKHLQYLDLSETKIKTLP-ESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIG--NLTH 215 (861)
Q Consensus 139 ~~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~--~l~~ 215 (861)
|+.+++|++|++++|.++.+| ..|+++++|++|++++|.+.+..|..++.+++|++|++++|.+.+..+..++ .+++
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 889999999999999998876 4689999999999999877777777788899999999999885444444443 4577
Q ss_pred cccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhh
Q 038705 216 LLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLML 295 (861)
Q Consensus 216 L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 295 (861)
|++|++..+.... ..... +..+.+|+.+.+.++... ........
T Consensus 173 L~~L~L~~n~l~~-~~~~~-----------------------------~~~l~~L~~L~l~~~~l~------~~~~~~~~ 216 (680)
T 1ziw_A 173 LKKLELSSNQIKE-FSPGC-----------------------------FHAIGRLFGLFLNNVQLG------PSLTEKLC 216 (680)
T ss_dssp ESEEECTTCCCCC-BCTTG-----------------------------GGGSSEECEEECTTCCCH------HHHHHHHH
T ss_pred ccEEECCCCcccc-cChhh-----------------------------hhhhhhhhhhhccccccC------hhhHHHHH
Confidence 8877654432211 01111 223334444443332210 00000011
Q ss_pred cccCCCCCccEEEEeecCCCCC-CcCCCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeeccccceeEECccccCC
Q 038705 296 DGLKPHRNLEELTIRGYGGTTF-PTWMGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFIIEMTSVKMVGSEFYGN 373 (861)
Q Consensus 296 ~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 373 (861)
..+ ..++|+.|+++++..... |.++.....++|+.|++++|.+.+..+ .++.+++|+.|++++|......+..+.+
T Consensus 217 ~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~- 294 (680)
T 1ziw_A 217 LEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG- 294 (680)
T ss_dssp HHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT-
T ss_pred HHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC-
Confidence 111 236778888877765443 444433222458888888888776655 6778888888888887655544444433
Q ss_pred cCcCCCCCcceEeccccc--------cccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCc
Q 038705 374 HCSVPFPSLETLCFQDIQ--------EWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLT 445 (861)
Q Consensus 374 ~~~~~~~~L~~L~l~~~~--------~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~ 445 (861)
+++|+.|+++++. .+..+....+.. +++|++|++++ +.+++..|.
T Consensus 295 -----l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~----l~~L~~L~l~~-n~l~~~~~~----------------- 347 (680)
T 1ziw_A 295 -----LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW----LKCLEHLNMED-NDIPGIKSN----------------- 347 (680)
T ss_dssp -----CTTCCEEECTTCBCCC------CCEECTTTTTT----CTTCCEEECCS-CCBCCCCTT-----------------
T ss_pred -----CCCccEEeccchhhhcccccccccccChhhccc----CCCCCEEECCC-CccCCCChh-----------------
Confidence 7788888887531 111111123333 78888888888 466533332
Q ss_pred ccCCCCCccceEEEccCCCC-cccccccccccccccchhhhhhhhhccCCCCC-CcccEEEeecccccccchhhhhcccc
Q 038705 446 VLVSSLPKLCKLEIGGCKGM-AWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFP-CSLQYLELSQCRYLVKLPQALLSLGF 523 (861)
Q Consensus 446 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~L~~L~l~~~~~~~~~~~~~~~l~~ 523 (861)
.+..+++|+.|++++|... ..... ..+..+. ++|+.|++++|.+.+..+..+..+++
T Consensus 348 -~~~~l~~L~~L~Ls~n~~~~~~l~~--------------------~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 348 -MFTGLINLKYLSLSNSFTSLRTLTN--------------------ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp -TTTTCTTCCEEECTTCBSCCCEECT--------------------TTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred -HhccccCCcEEECCCCchhhhhcch--------------------hhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 2334556666666655321 00000 0000000 37999999999999888889999999
Q ss_pred ccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEee
Q 038705 524 LREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSV 603 (861)
Q Consensus 524 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 603 (861)
|+.|++++|. ....++...+..+++|++|++++|. +..+.+.. ....| +|++|++
T Consensus 407 L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~----------------------~~~~~-~L~~L~l 461 (680)
T 1ziw_A 407 LEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNS----------------------FALVP-SLQRLML 461 (680)
T ss_dssp CCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCS-EEECCTTT----------------------TTTCT-TCCEEEC
T ss_pred CCEEeCCCCc-CccccCcccccCcccccEEecCCCC-cceeChhh----------------------hhcCc-ccccchh
Confidence 9999999993 2234555566788899999999884 33211110 11233 6888888
Q ss_pred ccccCc--chhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceec----C----CCCCCcCCccEE
Q 038705 604 DHCLKL--KSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISF----P----DGGFLSSTLTKL 673 (861)
Q Consensus 604 ~~~~~l--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~----~----~~~~~~~~L~~L 673 (861)
++|... +.+|..+..+++|+.|++++|.+.+..+..+.++++|++|++++|...... | ..+..+++|+.|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 888543 567788889999999999999988777788899999999999999654321 1 125668899999
Q ss_pred EeccccCccccc-ccCCCCCccCEEeecCCCCCcccCCCC--CCCCccEEEecCccCcccccccccCC-cCCCcCeEEee
Q 038705 674 WIYECEKLKALP-NGMHNLTSLQELEIGDLPSMVYFPEDG--FPTNLHSLEIRDMKMWKSLIEWEPLN-RFTSLRRLSIH 749 (861)
Q Consensus 674 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~ 749 (861)
++++|.+. .+| ..+.++++|++|++++| .++.+|... .+++|++|++++|.+.+..+.. +. .+++|+.|+++
T Consensus 542 ~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 542 NLESNGFD-EIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV--FGPAFRNLTELDMR 617 (680)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH--HHHHHTTCSEEECT
T ss_pred ECCCCCCC-CCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcCCccChhH--hcccccccCEEEcc
Confidence 99998866 454 46889999999999988 677777764 3689999999999887755543 44 67899999999
Q ss_pred cCCCccc
Q 038705 750 GCQDMVS 756 (861)
Q Consensus 750 ~~~~~~~ 756 (861)
+|+....
T Consensus 618 ~N~~~c~ 624 (680)
T 1ziw_A 618 FNPFDCT 624 (680)
T ss_dssp TCCCCBC
T ss_pred CCCcccC
Confidence 9876543
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-40 Score=385.86 Aligned_cols=290 Identities=16% Similarity=0.108 Sum_probs=165.9
Q ss_pred cccEEEe-ecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 499 SLQYLEL-SQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 499 ~L~~L~l-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
.++.+++ ..+.+.+.++. +..+++|+.|++++| ....++ .+..+++|++|++++|.. +. ++.. .+++|++|
T Consensus 262 ~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~--~~~~l~--~l~~~~~L~~L~l~~n~l-~~-lp~~-~l~~L~~L 333 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGV--SIKYLE--DVPKHFKWQSLSIIRCQL-KQ-FPTL-DLPFLKSL 333 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESC--CCCCCC--CCCTTCCCSEEEEESCCC-SS-CCCC-CCSSCCEE
T ss_pred cHhheeccccccccccccc-cccCCCCCEEEecCc--cchhhh--hccccccCCEEEcccccC-cc-cccC-CCCcccee
Confidence 4555555 34444444443 666666666666666 334444 235556666666666632 32 3322 45555555
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcch--hhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCC
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKS--LAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCP 655 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 655 (861)
+++++.....++ .+.++ +|++|++++|...+. +|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.
T Consensus 334 ~l~~n~~~~~~~-~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 334 TLTMNKGSISFK-KVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EEESCSSCEECC-CCCCT-TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSE
T ss_pred eccCCcCccchh-hccCC-CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCc
Confidence 555554444332 33344 577777777643332 25566667777777777766433 45666667777777777765
Q ss_pred CceecC-CCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcc-cCCC-CCCCCccEEEecCccCccccc
Q 038705 656 NLISFP-DGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVY-FPED-GFPTNLHSLEIRDMKMWKSLI 732 (861)
Q Consensus 656 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~-~~~~-~~~~~L~~L~l~~~~~~~~~~ 732 (861)
..+..| ..+..+++|++|++++|.+.+..|..+.++++|++|++++|..... +|.. ..+++|++|++++|.+.+..+
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 444444 3455666777777777776666666666777777777777643331 3332 345667777777766665554
Q ss_pred ccccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCCCCCCCCCEEeccCCCCcccCCCC-
Q 038705 733 EWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVGESLPSLECLILDDCPKLRYFPDK- 811 (861)
Q Consensus 733 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~- 811 (861)
.. +..+++|++|++++|+.....|. ....+++|+.|++++| +++.+|..
T Consensus 491 ~~--~~~l~~L~~L~Ls~N~l~~~~~~---------------------------~~~~l~~L~~L~l~~N-~l~~~p~~~ 540 (606)
T 3vq2_A 491 GV--FDTLHRLQLLNMSHNNLLFLDSS---------------------------HYNQLYSLSTLDCSFN-RIETSKGIL 540 (606)
T ss_dssp TT--TTTCTTCCEEECCSSCCSCEEGG---------------------------GTTTCTTCCEEECTTS-CCCCEESCG
T ss_pred hh--hcccccCCEEECCCCcCCCcCHH---------------------------HccCCCcCCEEECCCC-cCcccCHhH
Confidence 43 66666777777766643332232 1245566777777776 35565542
Q ss_pred -CCccccceeeccCCcchH
Q 038705 812 -GLPPSLLQLHISNCPLIE 829 (861)
Q Consensus 812 -~~~~sL~~L~l~~c~~l~ 829 (861)
.++++|++|++++||...
T Consensus 541 ~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 541 QHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GGSCTTCCEEECCSCCCCC
T ss_pred hhhcccCcEEEccCCCccc
Confidence 223457777777776544
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-40 Score=382.02 Aligned_cols=228 Identities=18% Similarity=0.124 Sum_probs=157.1
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+|++|++++|.+ +.+| .+ .+++|++|++++| .....+ .+..+++|++|++++|. ++...
T Consensus 308 ~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n-~~~~~~---~~~~l~~L~~L~ls~n~-l~~~~------------- 366 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMN-KGSISF---KKVALPSLSYLDLSRNA-LSFSG------------- 366 (606)
T ss_dssp CCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESC-SSCEEC---CCCCCTTCCEEECCSSC-EEEEE-------------
T ss_pred cCCEEEcccccC-cccc-cC-CCCccceeeccCC-cCccch---hhccCCCCCEEECcCCc-cCCCc-------------
Confidence 777888888877 5666 44 7888888888887 222222 23567778888887773 22210
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCccccc-ccccCCCCCcEEeeccCCCc
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLP-DGLLKLNHLQEIFISHCPNL 657 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~ 657 (861)
.++ ...+.++ +|++|++++|. +..+|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|...
T Consensus 367 --~~~-----~~~~~~~-~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 367 --CCS-----YSDLGTN-SLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp --ECC-----HHHHCCS-CCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred --chh-----hhhccCC-cccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence 000 0012233 68888888874 55566777788888888888888777666 56777888888888888766
Q ss_pred eecCCCCCCcCCccEEEeccccCccc-ccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCccccccc
Q 038705 658 ISFPDGGFLSSTLTKLWIYECEKLKA-LPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIEW 734 (861)
Q Consensus 658 ~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~ 734 (861)
...|..+..+++|++|++++|.+.+. +|..+..+++|++|++++|. +..++.. ..+++|++|++++|++.+..+..
T Consensus 438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 66777777788888888888877663 67777888888888888884 4444333 44678888888888877766655
Q ss_pred ccCCcCCCcCeEEeecCCCccccCCC
Q 038705 735 EPLNRFTSLRRLSIHGCQDMVSFPQD 760 (861)
Q Consensus 735 ~~~~~l~~L~~L~l~~~~~~~~~~~~ 760 (861)
+..+++|+.|++++|+ ++.+|..
T Consensus 517 --~~~l~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 517 --YNQLYSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp --TTTCTTCCEEECTTSC-CCCEESC
T ss_pred --ccCCCcCCEEECCCCc-CcccCHh
Confidence 7788888888888885 4466653
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.4e-40 Score=383.91 Aligned_cols=518 Identities=13% Similarity=0.062 Sum_probs=265.6
Q ss_pred hhhhhccCCCCcccEEEccCcccccc-CcccCCCCccceeeccCCccccc-chhhhccccccEEecCCccchhhchhhhh
Q 038705 110 HSVLYMLFKLQRLRVLSLRGYSIFHV-PSSIGDLKHLQYLDLSETKIKTL-PESVNKLWNLHTLLLENCHRLKKLCANMG 187 (861)
Q Consensus 110 ~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~n~~~~~lp~~~~ 187 (861)
..+|..+.. .+++|+|++|.++.+ |.+|+++++|++|+|++|.++.+ |..|+++++|++|++++|.+.+..|..|+
T Consensus 25 ~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 25 NEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp SSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred ccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 355655543 689999999999887 67889999999999999998866 56799999999999999877777788899
Q ss_pred hccccceeecCCCcccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcc
Q 038705 188 SLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEK 267 (861)
Q Consensus 188 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 267 (861)
.+++|++|++++|.+.+..|..++++++|++|++..+. +..+..
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~------------------------l~~~~~------------ 146 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH------------------------ISSIKL------------ 146 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC------------------------CCCCCC------------
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCc------------------------ccccCc------------
Confidence 99999999999998544445667778887777543221 110000
Q ss_pred cCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCC-cCCCCCCcCCee--EEEEeCCCCCCCCC
Q 038705 268 RNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFP-TWMGDSSFANLV--LLRFEGCHRCTSLP 344 (861)
Q Consensus 268 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~~~~L~--~L~L~~~~~~~~~~ 344 (861)
..+..+++|+.|++++|....++ .++ ..+++|+ .|++++|.+.+..|
T Consensus 147 ----------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 147 ----------------------------PKGFPTEKLKVLDFQNNAIHYLSKEDM--SSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp ----------------------------CTTCCCTTCCEEECCSSCCCEECHHHH--HTTTTCCSEEEECTTCCCCEECT
T ss_pred ----------------------------ccccCCcccCEEEcccCcccccChhhh--hhhcccceeEEecCCCccCccCh
Confidence 00122456666666666655442 222 2355666 67777777766666
Q ss_pred CCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEecccccccccc--ccCCCCCcccccCccceEeccCCCCC
Q 038705 345 SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGW--IPHGSGKEVNVFPQLRELSLIGCPKL 422 (861)
Q Consensus 345 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~~~~~L~~L~l~~c~~l 422 (861)
......+|+.|++++|..+........ -..++.+.+..+..+... ....+..-. -.+|+.|++++ +.+
T Consensus 197 ~~~~~~~L~~L~l~~~~~~~~~~~~l~-------~~~l~~l~~~~~~~~~~~~i~~~~~~~l~--~~~L~~L~l~~-n~l 266 (606)
T 3t6q_A 197 GAFDSAVFQSLNFGGTQNLLVIFKGLK-------NSTIQSLWLGTFEDMDDEDISPAVFEGLC--EMSVESINLQK-HYF 266 (606)
T ss_dssp TTTTTCEEEEEECTTCSCHHHHHHHTT-------TCEEEEEECCCCTTSCCCCCCGGGGGGGG--GSEEEEEECTT-CCC
T ss_pred hHhhhccccccccCCchhHHHHhhhcc-------ccchhheechhhccccccccChhHhchhh--cCceeEEEeec-Ccc
Confidence 545556777777777652221110000 112222222222211111 111111100 12677888887 456
Q ss_pred cCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccE
Q 038705 423 QGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQY 502 (861)
Q Consensus 423 ~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~ 502 (861)
++..+. .+..+++|+.|++++|...... ..+..+ ++|++
T Consensus 267 ~~~~~~------------------~~~~l~~L~~L~l~~n~l~~lp----------------------~~l~~l-~~L~~ 305 (606)
T 3t6q_A 267 FNISSN------------------TFHCFSGLQELDLTATHLSELP----------------------SGLVGL-STLKK 305 (606)
T ss_dssp SSCCTT------------------TTTTCTTCSEEECTTSCCSCCC----------------------SSCCSC-TTCCE
T ss_pred CccCHH------------------HhccccCCCEEeccCCccCCCC----------------------hhhccc-ccCCE
Confidence 522222 1223334444444444321100 011111 36777
Q ss_pred EEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccC--C-CCCCCCCccEEEE
Q 038705 503 LELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLL--P-KNELPATLEHLHV 579 (861)
Q Consensus 503 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~-~~~~~~~L~~L~l 579 (861)
|++++|.+.+..+..+..+++|++|++++| .....++...+..+++|++|++++|. ++... + ....+++|++|++
T Consensus 306 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 306 LVLSANKFENLCQISASNFPSLTHLSIKGN-TKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp EECTTCCCSBGGGGCGGGCTTCSEEECCSC-SSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEEC
T ss_pred EECccCCcCcCchhhhhccCcCCEEECCCC-CcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEEC
Confidence 777777777666667777777777777777 22334555545667777777777773 22211 1 1111333333333
Q ss_pred ecCCCcccccc-cCCCcccCcEEeeccccCcchhhh-hccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCc
Q 038705 580 KSCGNLAFLSL-VGNLPKALKYLSVDHCLKLKSLAE-RLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNL 657 (861)
Q Consensus 580 ~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 657 (861)
+++......+. .+..+ +|++|++++|...+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|+..
T Consensus 384 ~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp CSCSCEEECTTTTTTCT-TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred CCCcCCcCCHHHhcCCc-cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 33221111110 11112 344444444433332222 2344444444444444444444444444444444444444332
Q ss_pred ee-cC--CCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC-CCCCCccEEEecCccCcccccc
Q 038705 658 IS-FP--DGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED-GFPTNLHSLEIRDMKMWKSLIE 733 (861)
Q Consensus 658 ~~-~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~ 733 (861)
+. ++ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|......+.. ..+++| .|++++|.+.+..+.
T Consensus 463 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp GGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred ccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 21 11 22333444444444444444444444444444444444444222211111 223444 444444444433332
Q ss_pred cccCCcCCCcCeEEeecCC
Q 038705 734 WEPLNRFTSLRRLSIHGCQ 752 (861)
Q Consensus 734 ~~~~~~l~~L~~L~l~~~~ 752 (861)
. +..+++|+.|++++|+
T Consensus 542 ~--~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 542 L--LPILSQQRTINLRQNP 558 (606)
T ss_dssp G--HHHHHTSSEEECTTCC
T ss_pred h--cccCCCCCEEeCCCCC
Confidence 2 3444444444444443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.9e-39 Score=373.76 Aligned_cols=517 Identities=15% Similarity=0.102 Sum_probs=332.0
Q ss_pred cCCCCceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCcccccc-Cc
Q 038705 59 HRFSENLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHV-PS 137 (861)
Q Consensus 59 ~~~~~~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~ 137 (861)
...+..+++|++.++.+..+ ...+|.++++||+|.+.++. +....|..|.++++|++|+|++|.++.+ |.
T Consensus 29 ~~l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~--------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 99 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQ--------IYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99 (606)
T ss_dssp TTSCTTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCC--------CCEECTTTTTTCTTCCEEECTTCCCSEECTT
T ss_pred CCCCCcCcEEEccCCccCcC-ChhHhccCccceEEECCCCc--------cceeChhhccCccccCeeeCCCCcccccChh
Confidence 45677899999999988755 24678899999999886543 3333344599999999999999999876 77
Q ss_pred ccCCCCccceeeccCCccccc-chhhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCcccccccccc
Q 038705 138 SIGDLKHLQYLDLSETKIKTL-PESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHL 216 (861)
Q Consensus 138 ~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 216 (861)
+|+.+++|++|++++|.++.+ |..++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..++.+++|
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 899999999999999999987 5669999999999999986655332344459999999999998665566778888888
Q ss_pred c--cccceEecccC-CCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHH
Q 038705 217 L--TLSRFVVGKDV-GSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTL 293 (861)
Q Consensus 217 ~--~L~~~~~~~~~-~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 293 (861)
+ .|++..+.... .... .....|+.+++.+|. ....
T Consensus 180 ~~l~L~l~~n~l~~~~~~~--------------------------------~~~~~L~~L~l~~~~----------~~~~ 217 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGA--------------------------------FDSAVFQSLNFGGTQ----------NLLV 217 (606)
T ss_dssp CSEEEECTTCCCCEECTTT--------------------------------TTTCEEEEEECTTCS----------CHHH
T ss_pred ceeEEecCCCccCccChhH--------------------------------hhhccccccccCCch----------hHHH
Confidence 8 44433222111 0000 111233333333221 0000
Q ss_pred hhcccCCCCCccEEEEeecCC---CCCCcC-CCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeeccccceeEECc
Q 038705 294 MLDGLKPHRNLEELTIRGYGG---TTFPTW-MGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFIIEMTSVKMVGS 368 (861)
Q Consensus 294 ~~~~l~~~~~L~~L~l~~~~~---~~~p~~-~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~ 368 (861)
.+..+.. ..++.+.+..... ..++.. +....-.+|+.|++++|.+.+..+ .++.+++|++|++++|.. ..++.
T Consensus 218 ~~~~l~~-~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~ 295 (606)
T 3t6q_A 218 IFKGLKN-STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPS 295 (606)
T ss_dssp HHHHTTT-CEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SCCCS
T ss_pred Hhhhccc-cchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-CCCCh
Confidence 1111100 1122222211110 111111 100001267888888887766555 477788888888887743 34443
Q ss_pred cccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccC
Q 038705 369 EFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLV 448 (861)
Q Consensus 369 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~ 448 (861)
.+ ..+++|++|++++ +.+....+..+.. +++|++|++++| .+.+.+|.. .+
T Consensus 296 ~l------~~l~~L~~L~l~~-n~l~~~~~~~~~~----l~~L~~L~l~~n-~~~~~~~~~-----------------~~ 346 (606)
T 3t6q_A 296 GL------VGLSTLKKLVLSA-NKFENLCQISASN----FPSLTHLSIKGN-TKRLELGTG-----------------CL 346 (606)
T ss_dssp SC------CSCTTCCEEECTT-CCCSBGGGGCGGG----CTTCSEEECCSC-SSCCBCCSS-----------------TT
T ss_pred hh------cccccCCEEECcc-CCcCcCchhhhhc----cCcCCEEECCCC-Ccccccchh-----------------hh
Confidence 33 2377888888887 4666665555655 899999999994 555455531 11
Q ss_pred CCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccc--hhhhhccccccE
Q 038705 449 SSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKL--PQALLSLGFLRE 526 (861)
Q Consensus 449 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~ 526 (861)
..++ +|++|++++|.+.+.. +..+..+++|++
T Consensus 347 ~~l~----------------------------------------------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 380 (606)
T 3t6q_A 347 ENLE----------------------------------------------NLRELDLSHDDIETSDCCNLQLRNLSHLQS 380 (606)
T ss_dssp TTCT----------------------------------------------TCCEEECCSSCCCEEEESTTTTTTCTTCCE
T ss_pred hccC----------------------------------------------cCCEEECCCCccccccCcchhcccCCCCCE
Confidence 1222 5555555555555443 445666666666
Q ss_pred EEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccc
Q 038705 527 MEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHC 606 (861)
Q Consensus 527 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 606 (861)
|++++| .+..++...+..+++|++|++++|. ++...+.. ....++ +|++|++++|
T Consensus 381 L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---------------------~~~~l~-~L~~L~l~~n 435 (606)
T 3t6q_A 381 LNLSYN--EPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQS---------------------PFQNLH-LLKVLNLSHS 435 (606)
T ss_dssp EECCSC--SCEEECTTTTTTCTTCSEEECTTCC-EECCTTCC---------------------TTTTCT-TCCEEECTTC
T ss_pred EECCCC--cCCcCCHHHhcCCccCCeEECCCCc-CCCcccch---------------------hhhCcc-cCCEEECCCC
Confidence 666666 3333444444556666666666662 22111000 011222 5777777777
Q ss_pred cCcchhhhhccCCCCccEEeeccccCcccc---cccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCccc
Q 038705 607 LKLKSLAERLDNNSSLEAVKISYCENLIVL---PDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKA 683 (861)
Q Consensus 607 ~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 683 (861)
...+..|..+..+++|++|++++|.+.+.. +..+..+++|++|++++|...+..|..+..+++|++|++++|++.+.
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 666666777778888888888888876632 35677888888888888876666677777888888888888888887
Q ss_pred ccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCccc
Q 038705 684 LPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKS 730 (861)
Q Consensus 684 ~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~ 730 (861)
.|..+.++++| +|++++|. +..++.. ..+++|+.|++++|++..+
T Consensus 516 ~~~~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 516 SIEALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp GGGGGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ChhHhCccccc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 88888888888 88888884 4455443 3367888888888887653
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=368.58 Aligned_cols=525 Identities=14% Similarity=0.073 Sum_probs=303.4
Q ss_pred CCCceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhc-cCCCCcccEEEccCcccccc-Ccc
Q 038705 61 FSENLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYM-LFKLQRLRVLSLRGYSIFHV-PSS 138 (861)
Q Consensus 61 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l-p~~ 138 (861)
.+.++++|.+..|.+..+ ...+|.++++||+|.+.++. ....+++. |.++++|++|+|++|.++.+ |.+
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~--------~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQY--------TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTC--------CCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCC--------CccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 677888888888877654 24567788888888875532 23455444 88888888888888888766 778
Q ss_pred cCCCCccceeeccCCcccc-cchh--hhccccccEEecCCccchhhch-hhhhhccccceeecCCCcccccCccccccc-
Q 038705 139 IGDLKHLQYLDLSETKIKT-LPES--VNKLWNLHTLLLENCHRLKKLC-ANMGSLIKLHHLKNSNVKALEEMPKGIGNL- 213 (861)
Q Consensus 139 ~~~L~~L~~L~Ls~~~i~~-lp~~--i~~L~~L~~L~l~~n~~~~~lp-~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l- 213 (861)
|+.+++|++|+|++|.++. +|.. |+++++|++|++++|.+.+..| ..|+++++|++|++++|.+.+..|..++.+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 8888888888888888874 5554 8888888888888876555443 567888888888888887666666666666
Q ss_pred -cccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHH
Q 038705 214 -THLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVT 292 (861)
Q Consensus 214 -~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 292 (861)
++|+.|++..+....... ..+..+.. .+ ....|+.|++++|.....
T Consensus 173 ~~~L~~L~L~~n~l~~~~~-~~~~~~~~----------------------~~-~~~~L~~L~Ls~n~l~~~--------- 219 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVS-VDWGKCMN----------------------PF-RNMVLEILDVSGNGWTVD--------- 219 (844)
T ss_dssp HCSSCCCEECCSBSCCCCC-CCCCSSSC----------------------TT-TTCCBSEEBCSSCCSSTT---------
T ss_pred CCccceEECCCCccccccc-cchhhcCC----------------------cc-ccCceeEEecCCCcCchh---------
Confidence 666666543332111000 00000000 00 001233333333322111
Q ss_pred HhhcccCCCCCccEEEEeecCCCCCCcCCCC-CCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeeeccccceeEECcccc
Q 038705 293 LMLDGLKPHRNLEELTIRGYGGTTFPTWMGD-SSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFIIEMTSVKMVGSEFY 371 (861)
Q Consensus 293 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~-~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 371 (861)
.|.++.. ....+++.+.+..+....... . .++... ....+.
T Consensus 220 ------------------------~~~~~~~~l~~~~l~~L~l~~~~~~~~~~-~---~~l~~~----------~~~~f~ 261 (844)
T 3j0a_A 220 ------------------------ITGNFSNAISKSQAFSLILAHHIMGAGFG-F---HNIKDP----------DQNTFA 261 (844)
T ss_dssp ------------------------TTSGGGGTSCSCCBSEEECCSSCCBCSSS-C---SSSTTG----------GGTTTT
T ss_pred ------------------------HHHHHHhhcCcccccceeccccccccccc-c---cccCCC----------Chhhhh
Confidence 1211110 011233444433221111000 0 000000 000000
Q ss_pred CCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCC
Q 038705 372 GNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSL 451 (861)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~ 451 (861)
+ ...++|+.|++++ +.+....+..+.. +++|+.|++++ +.+++..|..+. .+
T Consensus 262 ~----l~~~~L~~L~Ls~-n~l~~~~~~~~~~----l~~L~~L~L~~-n~i~~~~~~~~~------------------~l 313 (844)
T 3j0a_A 262 G----LARSSVRHLDLSH-GFVFSLNSRVFET----LKDLKVLNLAY-NKINKIADEAFY------------------GL 313 (844)
T ss_dssp T----TTTSCCCEEECTT-CCCCEECSCCSSS----CCCCCEEEEES-CCCCEECTTTTT------------------TC
T ss_pred c----cccCCccEEECCC-CcccccChhhhhc----CCCCCEEECCC-CcCCCCChHHhc------------------CC
Confidence 0 0123445555544 2344433333433 55666666666 344422222111 11
Q ss_pred CccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEec
Q 038705 452 PKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYG 531 (861)
Q Consensus 452 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 531 (861)
++|+.|++++|...... ...+..+ ++|++|++++|.+....+..+..+++|+.|++++
T Consensus 314 ~~L~~L~Ls~N~l~~~~---------------------~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 314 DNLQVLNLSYNLLGELY---------------------SSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp SSCCEEEEESCCCSCCC---------------------SCSCSSC-TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCCCEEECCCCCCCccC---------------------HHHhcCC-CCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 11222222221100000 0001111 2555555555555444444555555666666655
Q ss_pred ccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcch
Q 038705 532 NLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKS 611 (861)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~ 611 (861)
| .+..++ .+++|+.|++++|. +..++ ....+++.|++++|...+.
T Consensus 372 N--~l~~i~-----~~~~L~~L~l~~N~-------------------------l~~l~---~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 372 N--ALTTIH-----FIPSIPDIFLSGNK-------------------------LVTLP---KINLTANLIHLSENRLENL 416 (844)
T ss_dssp C--CSCCCS-----SCCSCSEEEEESCC-------------------------CCCCC---CCCTTCCEEECCSCCCCSS
T ss_pred C--CCCccc-----CCCCcchhccCCCC-------------------------ccccc---ccccccceeecccCccccC
Confidence 5 222221 24455555555552 22222 1123688999998854432
Q ss_pred -hhhhccCCCCccEEeeccccCcccccc-cccCCCCCcEEeeccCCCce-----ecCCCCCCcCCccEEEeccccCcccc
Q 038705 612 -LAERLDNNSSLEAVKISYCENLIVLPD-GLLKLNHLQEIFISHCPNLI-----SFPDGGFLSSTLTKLWIYECEKLKAL 684 (861)
Q Consensus 612 -~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~ 684 (861)
.+..+.++++|+.|++++|.+.+..+. .+..+++|+.|++++|.... ..+..+..+++|+.|++++|.+.+..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 496 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccC
Confidence 233466899999999999998765433 45568999999999996542 23345667899999999999988877
Q ss_pred cccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCccc
Q 038705 685 PNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMVS 756 (861)
Q Consensus 685 ~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 756 (861)
|..+.++++|++|++++| .++.++...+.++|+.|++++|.+.+..+. .+++|+.|++++|+....
T Consensus 497 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~-----~~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 497 PGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPD-----VFVSLSVLDITHNKFICE 562 (844)
T ss_dssp TTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSC-----CCSSCCEEEEEEECCCCS
T ss_pred hhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCcCCCCChh-----HhCCcCEEEecCCCcccc
Confidence 888999999999999999 688888888889999999999999887664 346899999999987654
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=360.67 Aligned_cols=258 Identities=17% Similarity=0.133 Sum_probs=163.8
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCC-CCCCCCccEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPK-NELPATLEHL 577 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L 577 (861)
+|++|++++|.+.+..+..|..+++|++|++++| .+..+....+..+++|+.|++++| .+..+.+. ...+++|+.|
T Consensus 291 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN--LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC--CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEE
T ss_pred CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC--CCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEE
Confidence 4444444444444444444445555555555554 222333333344445555555554 23332211 1124455555
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccc-cccccCCCCCcEEeeccCCC
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVL-PDGLLKLNHLQEIFISHCPN 656 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~ 656 (861)
+++++. ++.++ .+| +|+.|++++|.. ..+|.. ..+++.|++++|.+.+.- +..+.++++|+.|++++|..
T Consensus 368 ~Ls~N~-l~~i~---~~~-~L~~L~l~~N~l-~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 368 DLRDNA-LTTIH---FIP-SIPDIFLSGNKL-VTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp EEETCC-SCCCS---SCC-SCSEEEEESCCC-CCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCC-CCccc---CCC-CcchhccCCCCc-cccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 555432 22222 233 799999999954 455543 578999999999876632 33456799999999999965
Q ss_pred ceecCC-CCCCcCCccEEEeccccCc-----ccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCc
Q 038705 657 LISFPD-GGFLSSTLTKLWIYECEKL-----KALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMW 728 (861)
Q Consensus 657 ~~~~~~-~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~ 728 (861)
....+. ....+++|+.|++++|.+. +..+..+.++++|++|++++| .++.++.. ..+++|++|++++|.+.
T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred cccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCCCC
Confidence 543332 2345789999999999875 334566889999999999999 56666655 44799999999999887
Q ss_pred ccccccccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCC
Q 038705 729 KSLIEWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFS 779 (861)
Q Consensus 729 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 779 (861)
...+.. +. ++|+.|++++|...+..|. .+++|+.|++.+.+
T Consensus 518 ~l~~~~--~~--~~L~~L~Ls~N~l~~~~~~------~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 518 VLSHND--LP--ANLEILDISRNQLLAPNPD------VFVSLSVLDITHNK 558 (844)
T ss_dssp SCCCCC--CC--SCCCEEEEEEECCCCCCSC------CCSSCCEEEEEEEC
T ss_pred ccChhh--hh--ccccEEECCCCcCCCCChh------HhCCcCEEEecCCC
Confidence 654432 33 8999999999976655554 34688888888744
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=348.62 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=125.3
Q ss_pred cCcEEeeccccCcchhhhhccCCCCccEEeeccccCccccc-ccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEe
Q 038705 597 ALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLP-DGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWI 675 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 675 (861)
+|++|++++|.. ..++..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|......|..+..+++|++|++
T Consensus 374 ~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 374 SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp CCCEEECCSCSE-EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred ccCEEECCCCcc-ccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 688999998854 4445558888999999999988777665 56788899999999999777777777788889999999
Q ss_pred ccccCc-ccccccCCCCCccCEEeecCCCCCccc-CCC-CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCC
Q 038705 676 YECEKL-KALPNGMHNLTSLQELEIGDLPSMVYF-PED-GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQ 752 (861)
Q Consensus 676 ~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~l~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 752 (861)
++|.+. +.+|..+..+++|++|++++|. +..+ |.. ..+++|++|++++|++.+..+.. +..+++|+.|++++|+
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI--FDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHH--hhcccCCcEEEecCCc
Confidence 998876 4678888899999999999984 4444 433 45788999999999887665544 7888999999999987
Q ss_pred CccccCC
Q 038705 753 DMVSFPQ 759 (861)
Q Consensus 753 ~~~~~~~ 759 (861)
.....+.
T Consensus 530 ~~~~~~~ 536 (570)
T 2z63_A 530 WDCSCPR 536 (570)
T ss_dssp BCCCTTT
T ss_pred ccCCCcc
Confidence 6655543
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.4e-37 Score=355.36 Aligned_cols=385 Identities=16% Similarity=0.159 Sum_probs=219.5
Q ss_pred CCcccccchhhhccccccEEecCCccchhh-----------------chhhhh--hccccceeecCCCcccccCcccccc
Q 038705 152 ETKIKTLPESVNKLWNLHTLLLENCHRLKK-----------------LCANMG--SLIKLHHLKNSNVKALEEMPKGIGN 212 (861)
Q Consensus 152 ~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~-----------------lp~~~~--~L~~L~~L~l~~~~~~~~~p~~i~~ 212 (861)
+|+++.+|..|+++++|++|++++|.+.+. +|..++ ++++|++|++++|.+.+.+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 467777888888888888888888876664 888888 8888888888888878888888888
Q ss_pred ccccccccceEecccCCCCcccccccccccceeeecCccCCCChhH-HHHHhhhcccCcchhheeeccCCCCCCcchhhH
Q 038705 213 LTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASE-AKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENV 291 (861)
Q Consensus 213 l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 291 (861)
+++|++|++..+.. ... .++..+..+
T Consensus 272 l~~L~~L~Ls~n~~-----------------------------l~~~~lp~~~~~L------------------------ 298 (636)
T 4eco_A 272 LPEMQLINVACNRG-----------------------------ISGEQLKDDWQAL------------------------ 298 (636)
T ss_dssp CSSCCEEECTTCTT-----------------------------SCHHHHHHHHHHH------------------------
T ss_pred CCCCCEEECcCCCC-----------------------------CccccchHHHHhh------------------------
Confidence 88888775432210 011 112111111
Q ss_pred HHhhcccCCCCCccEEEEeecCCCCCCc--CCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeeeccccceeEECcc
Q 038705 292 TLMLDGLKPHRNLEELTIRGYGGTTFPT--WMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFIIEMTSVKMVGSE 369 (861)
Q Consensus 292 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 369 (861)
..+..+++|+.|++++|....+|. ++. .+++|+.|++++|.+.+.+|.++.+++|+.|++++|... .++..
T Consensus 299 ----~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~ 371 (636)
T 4eco_A 299 ----ADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPAN 371 (636)
T ss_dssp ----HHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTT
T ss_pred ----hccccCCCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHh
Confidence 012234677888888887777887 664 378888888888888877777778888888888877533 33322
Q ss_pred ccCCcCcCCCCC-cceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccC
Q 038705 370 FYGNHCSVPFPS-LETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLV 448 (861)
Q Consensus 370 ~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~ 448 (861)
+.. +++ |++|++++ +.+..+ +..+.... +++|+.|++++ +.+.+.+|..++....
T Consensus 372 l~~------l~~~L~~L~Ls~-N~l~~l-p~~~~~~~--l~~L~~L~Ls~-N~l~~~~p~~l~~~~~------------- 427 (636)
T 4eco_A 372 FCG------FTEQVENLSFAH-NKLKYI-PNIFDAKS--VSVMSAIDFSY-NEIGSVDGKNFDPLDP------------- 427 (636)
T ss_dssp SEE------ECTTCCEEECCS-SCCSSC-CSCCCTTC--SSCEEEEECCS-SCTTTTTTCSSCTTCS-------------
T ss_pred hhh------hcccCcEEEccC-CcCccc-chhhhhcc--cCccCEEECcC-CcCCCcchhhhccccc-------------
Confidence 221 333 44444444 223311 11121100 22444444444 2333333332221000
Q ss_pred CCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEE
Q 038705 449 SSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREME 528 (861)
Q Consensus 449 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 528 (861)
..+ .+ ++|++|++++|.+....+..+..+++|+.|+
T Consensus 428 ------------------------------------------~~~-~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 428 ------------------------------------------TPF-KG-INVSSINLSNNQISKFPKELFSTGSPLSSIN 463 (636)
T ss_dssp ------------------------------------------SCC-CC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEEE
T ss_pred ------------------------------------------ccc-cC-CCCCEEECcCCccCcCCHHHHccCCCCCEEE
Confidence 000 00 1455555555554432222333445555555
Q ss_pred EecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccC
Q 038705 529 IYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLK 608 (861)
Q Consensus 529 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~ 608 (861)
+++| .+..+|...+.... .. ...++ +|++|++++|..
T Consensus 464 Ls~N--~l~~i~~~~~~~~~-------------------------------~~---------~~~l~-~L~~L~Ls~N~l 500 (636)
T 4eco_A 464 LMGN--MLTEIPKNSLKDEN-------------------------------EN---------FKNTY-LLTSIDLRFNKL 500 (636)
T ss_dssp CCSS--CCSBCCSSSSEETT-------------------------------EE---------CTTGG-GCCEEECCSSCC
T ss_pred CCCC--CCCCcCHHHhcccc-------------------------------cc---------ccccC-CccEEECcCCcC
Confidence 5555 11123322111000 00 00111 577888888744
Q ss_pred cchhhhhcc--CCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccc
Q 038705 609 LKSLAERLD--NNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPN 686 (861)
Q Consensus 609 l~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 686 (861)
+.+|..+. .+++|+.|++++|.+.+ +|..+..+++|++|++++|+ ++++|.+.+.+|.
T Consensus 501 -~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~ 560 (636)
T 4eco_A 501 -TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------------DAQGNRTLREWPE 560 (636)
T ss_dssp -CBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB------------------CTTCCBCCCCCCT
T ss_pred -CccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc------------------ccccCcccccChH
Confidence 46777776 78888888888887776 77778888888888886653 2344555555566
Q ss_pred cCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcc
Q 038705 687 GMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWK 729 (861)
Q Consensus 687 ~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~ 729 (861)
.+..+++|++|++++|. ++.+|.. +.++|++|++++|++..
T Consensus 561 ~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 561 GITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp TGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCTTCE
T ss_pred HHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCCCcc
Confidence 66666666666666663 3555544 23566666666665543
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=339.89 Aligned_cols=272 Identities=18% Similarity=0.167 Sum_probs=185.1
Q ss_pred cccEEEeecc-cccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 499 SLQYLELSQC-RYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 499 ~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
.++.+++.++ .+.+..+..+..+++|+.|++++| .+..+|... ..+ +|++|++++|. +.. ++. ..+++|+.|
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~l~~l~~~~-~~~-~L~~L~l~~n~-~~~-l~~-~~l~~L~~L 330 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV--TIERVKDFS-YNF-GWQHLELVNCK-FGQ-FPT-LKLKSLKRL 330 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC--EECSCCBCC-SCC-CCSEEEEESCB-CSS-CCB-CBCSSCCEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCc--cchhhhhhh-ccC-CccEEeeccCc-ccc-cCc-ccccccCEE
Confidence 5778888887 666777778888899999999988 444566554 334 88889988884 333 332 346777777
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcchh--hhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCC
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSL--AERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCP 655 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 655 (861)
++.++.....++ ...+| +|++|++++|...... |..+..+++|++|++++|.+.+..+. +..+++|++|++++|.
T Consensus 331 ~l~~n~~~~~~~-~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 331 TFTSNKGGNAFS-EVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSN 407 (570)
T ss_dssp EEESCBSCCBCC-CCBCT-TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSE
T ss_pred eCcCCccccccc-cccCC-CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCc
Confidence 777765444443 24444 6888888888544332 56677788888888888876654444 7778888888888875
Q ss_pred CceecC-CCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCC-cccCCC-CCCCCccEEEecCccCccccc
Q 038705 656 NLISFP-DGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSM-VYFPED-GFPTNLHSLEIRDMKMWKSLI 732 (861)
Q Consensus 656 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l-~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 732 (861)
.....| ..+..+++|++|++++|.+.+..|..+.++++|++|++++|... ..+|.. ..+++|++|++++|.+.+..+
T Consensus 408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 444444 34566788888888888877777777788888888888888533 235533 446778888888887776555
Q ss_pred ccccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCCCCCCCCCEEeccCCCCcccCC
Q 038705 733 EWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVGESLPSLECLILDDCPKLRYFP 809 (861)
Q Consensus 733 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 809 (861)
.. +..+++|++|++++|. +..++.. ....+++|+.|++++|+.-...+
T Consensus 488 ~~--~~~l~~L~~L~l~~n~-l~~~~~~--------------------------~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 488 TA--FNSLSSLQVLNMASNQ-LKSVPDG--------------------------IFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TT--TTTCTTCCEEECCSSC-CSCCCTT--------------------------TTTTCTTCCEEECCSSCBCCCTT
T ss_pred hh--hhcccCCCEEeCCCCc-CCCCCHH--------------------------HhhcccCCcEEEecCCcccCCCc
Confidence 44 7777788888887773 3333221 11566778888888876555444
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.8e-35 Score=336.13 Aligned_cols=481 Identities=17% Similarity=0.133 Sum_probs=304.2
Q ss_pred hhhhhccCCCCcccEEEccCcccccc-CcccCCCCccceeeccCCcccccc-hhhhccccccEEecCCccchhhchhhhh
Q 038705 110 HSVLYMLFKLQRLRVLSLRGYSIFHV-PSSIGDLKHLQYLDLSETKIKTLP-ESVNKLWNLHTLLLENCHRLKKLCANMG 187 (861)
Q Consensus 110 ~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~i~~lp-~~i~~L~~L~~L~l~~n~~~~~lp~~~~ 187 (861)
..+|..+. ++|++|++++|.++.+ |.+|..+++|++|++++|.++.+| ..|+++++|++|++++|.+.+..|..|+
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 35555532 5677777777777766 566777777777777777777665 4577777777777777765555555577
Q ss_pred hccccceeecCCCcccc-cCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhc
Q 038705 188 SLIKLHHLKNSNVKALE-EMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIE 266 (861)
Q Consensus 188 ~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 266 (861)
++++|++|++++|.+.+ ..|..++
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------------------------- 120 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFP------------------------------------------------------- 120 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCT-------------------------------------------------------
T ss_pred cCCCCcEEECCCCcccccchhhhhh-------------------------------------------------------
Confidence 77777777777776322 1222222
Q ss_pred ccCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecC-CCCCC-cCCCCCCcCCeeEEEEeCCCCCCCCC
Q 038705 267 KRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYG-GTTFP-TWMGDSSFANLVLLRFEGCHRCTSLP 344 (861)
Q Consensus 267 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p-~~~~~~~~~~L~~L~L~~~~~~~~~~ 344 (861)
.+++|++|+++++. ...+| ..+ ..+++|++|++++|.+.+..|
T Consensus 121 ---------------------------------~l~~L~~L~L~~n~~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 121 ---------------------------------NLTNLQTLRIGNVETFSEIRRIDF--AGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp ---------------------------------TCTTCCEEEEEESSSCCEECTTTT--TTCCEEEEEEEEETTCCEECT
T ss_pred ---------------------------------ccCCccEEECCCCccccccCHhhh--hcccccCeeeccCCcccccCh
Confidence 23556666666665 44554 344 348899999999999888777
Q ss_pred -CCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEecccccccccccc--CCCCCcccccCccceEeccCCCC
Q 038705 345 -SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIP--HGSGKEVNVFPQLRELSLIGCPK 421 (861)
Q Consensus 345 -~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~~~L~~L~l~~c~~ 421 (861)
.++.+++|+.|+++++... .++..+. ..+++|++|++++ +.+.+... ..+... +++|+.|+++++ .
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~-~~~~~~~-----~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~---~~~L~~L~l~~n-~ 234 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESA-FLLEIFA-----DILSSVRYLELRD-TNLARFQFSPLPVDEV---SSPMKKLAFRGS-V 234 (549)
T ss_dssp TTTTTCSEEEEEEEECSBST-THHHHHH-----HSTTTBSEEEEES-CBCTTCCCCCCSSCCC---CCCCCEEEEESC-E
T ss_pred hhhhccccCceEecccCccc-ccchhhH-----hhcccccEEEccC-Cccccccccccchhhh---hhcccceecccc-c
Confidence 7888999999999877531 1111111 1266777777776 34444321 111111 556666666662 3
Q ss_pred CcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCccc
Q 038705 422 LQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQ 501 (861)
Q Consensus 422 l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~ 501 (861)
+++..+.. +...+..+++|+.+++++|.......... . ....+..+ ++++
T Consensus 235 l~~~~~~~--------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~---~------------~~~~~~~l-~~L~ 284 (549)
T 2z81_A 235 LTDESFNE--------------LLKLLRYILELSEVEFDDCTLNGLGDFNP---S------------ESDVVSEL-GKVE 284 (549)
T ss_dssp EEHHHHHH--------------HHGGGGGCTTCCEEEEESCEEECCSCCCC---C------------TTTCCCCC-TTCC
T ss_pred cchhHHHH--------------HHHHhhhhccccccccccccccccccccc---c------------chhhhhhh-cccc
Confidence 33211100 00112233444444444443211000000 0 00011111 3667
Q ss_pred EEEeeccccccc-----chhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccE
Q 038705 502 YLELSQCRYLVK-----LPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEH 576 (861)
Q Consensus 502 ~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 576 (861)
.|++.++.+... ++..+...++|+.|++++| .+..+|...+..+++|++|++++|. +....+..
T Consensus 285 ~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n--~l~~ip~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------- 353 (549)
T 2z81_A 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS--KVFLVPCSFSQHLKSLEFLDLSENL-MVEEYLKN-------- 353 (549)
T ss_dssp EEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS--CCCCCCHHHHHHCTTCCEEECCSSC-CCHHHHHH--------
T ss_pred cccccccccchhhhcccchhhhhhcccceEEEeccC--ccccCCHHHHhcCccccEEEccCCc-cccccccc--------
Confidence 777766654321 1223444567777777777 3456665554557777777777773 22101000
Q ss_pred EEEecCCCcccccccCCCcccCcEEeeccccCcchhh---hhccCCCCccEEeeccccCcccccccccCCCCCcEEeecc
Q 038705 577 LHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLA---ERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISH 653 (861)
Q Consensus 577 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 653 (861)
....+.++ +|++|++++|.. +.++ ..+..+++|++|++++|.+. .+|..+..+++|++|++++
T Consensus 354 -----------~~~~~~l~-~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 354 -----------SACKGAWP-SLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp -----------HTCTTSST-TCCEEECTTSCC-CCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTT
T ss_pred -----------hhhhhccc-cCcEEEccCCcc-cccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCC
Confidence 00022344 689999999854 3333 45788999999999999766 6888889999999999999
Q ss_pred CCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccc
Q 038705 654 CPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIE 733 (861)
Q Consensus 654 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 733 (861)
|. +..+|... .++|+.|++++|.+.+. ...+++|++|++++| .++.+|...++++|++|++++|++.+..+.
T Consensus 420 N~-l~~l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 420 TG-IRVVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp SC-CSCCCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CC-cccccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCCccCCcCHH
Confidence 95 55566543 36999999999986553 257899999999999 677888877899999999999998876665
Q ss_pred cccCCcCCCcCeEEeecCCCccccC
Q 038705 734 WEPLNRFTSLRRLSIHGCQDMVSFP 758 (861)
Q Consensus 734 ~~~~~~l~~L~~L~l~~~~~~~~~~ 758 (861)
. +..+++|+.|++++|+.....+
T Consensus 492 ~--~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 492 I--FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp G--GGGCTTCCEEECCSSCBCCCHH
T ss_pred H--HhcCcccCEEEecCCCccCCCc
Confidence 4 8899999999999998765544
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-35 Score=347.61 Aligned_cols=391 Identities=16% Similarity=0.137 Sum_probs=228.6
Q ss_pred cceeeccC--CcccccchhhhccccccEEecCCccchh-----------------hchhhhh--hccccceeecCCCccc
Q 038705 145 LQYLDLSE--TKIKTLPESVNKLWNLHTLLLENCHRLK-----------------KLCANMG--SLIKLHHLKNSNVKAL 203 (861)
Q Consensus 145 L~~L~Ls~--~~i~~lp~~i~~L~~L~~L~l~~n~~~~-----------------~lp~~~~--~L~~L~~L~l~~~~~~ 203 (861)
++.+.+.. |.++.+|..|+++++|++|+|++|.+.+ .+|..++ ++++|++|++++|.+.
T Consensus 425 l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp CCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred hhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence 34444433 6666788888888888888888876655 3777766 8888888888888777
Q ss_pred ccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhH-HHHHhhhcccCcchhheeeccCCC
Q 038705 204 EEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASE-AKEAQLIEKRNLLRLLLEWTSSTS 282 (861)
Q Consensus 204 ~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~ 282 (861)
+.+|..++++++|+.|++..+.. ... .++..+..+.
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~-----------------------------lsg~~iP~~i~~L~-------------- 541 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRG-----------------------------ISAAQLKADWTRLA-------------- 541 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTT-----------------------------SCHHHHHHHHHHHH--------------
T ss_pred ccChHHHhCCCCCCEEECcCCCC-----------------------------cccccchHHHHhhh--------------
Confidence 78887788888887774432210 011 1111111110
Q ss_pred CCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCc--CCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeeeccc
Q 038705 283 DDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPT--WMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFIIEM 360 (861)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~ 360 (861)
..+..+++|+.|++++|....+|. ++. .+++|+.|++++|.+. .+|.++.+++|+.|++++|
T Consensus 542 -------------~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 542 -------------DDEDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp -------------HCTTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSS
T ss_pred -------------hcccccCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCC
Confidence 123445678888888888777777 554 3778888888888876 6677778888888888777
Q ss_pred cceeEECccccCCcCcCCCCC-cceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEe
Q 038705 361 TSVKMVGSEFYGNHCSVPFPS-LETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVR 439 (861)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~ 439 (861)
... .++..+.. +++ |+.|++++ +.+..+ +..+.... .++|+.|++++ +.+.+.+|.....+.
T Consensus 606 ~l~-~lp~~l~~------l~~~L~~L~Ls~-N~L~~l-p~~~~~~~--~~~L~~L~Ls~-N~l~g~ip~l~~~l~----- 668 (876)
T 4ecn_A 606 QIE-EIPEDFCA------FTDQVEGLGFSH-NKLKYI-PNIFNAKS--VYVMGSVDFSY-NKIGSEGRNISCSMD----- 668 (876)
T ss_dssp CCS-CCCTTSCE------ECTTCCEEECCS-SCCCSC-CSCCCTTC--SSCEEEEECCS-SCTTTTSSSCSSCTT-----
T ss_pred ccc-cchHHHhh------ccccCCEEECcC-CCCCcC-chhhhccc--cCCCCEEECcC-CcCCCccccchhhhc-----
Confidence 532 22222111 333 44444433 122211 11111100 12244444444 233322221000000
Q ss_pred ccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhh
Q 038705 440 GCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALL 519 (861)
Q Consensus 440 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~ 519 (861)
.+ .. ++|+.|++++|.+....+..+.
T Consensus 669 ----------------------------------------------------~~-~~-~~L~~L~Ls~N~L~~lp~~~~~ 694 (876)
T 4ecn_A 669 ----------------------------------------------------DY-KG-INASTVTLSYNEIQKFPTELFA 694 (876)
T ss_dssp ----------------------------------------------------TC-CC-CCEEEEECCSSCCCSCCHHHHH
T ss_pred ----------------------------------------------------cc-cC-CCcCEEEccCCcCCccCHHHHc
Confidence 00 00 2566666666666533222334
Q ss_pred ccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCc
Q 038705 520 SLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALK 599 (861)
Q Consensus 520 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 599 (861)
.+++|+.|++++| .+..+|...+.... .. ...++ +|+
T Consensus 695 ~l~~L~~L~Ls~N--~L~~ip~~~~~~~~-------------------------------~~---------l~nl~-~L~ 731 (876)
T 4ecn_A 695 TGSPISTIILSNN--LMTSIPENSLKPKD-------------------------------GN---------YKNTY-LLT 731 (876)
T ss_dssp TTCCCSEEECCSC--CCSCCCTTSSSCTT-------------------------------SC---------CTTGG-GCC
T ss_pred cCCCCCEEECCCC--cCCccChHHhcccc-------------------------------cc---------ccccC-Ccc
Confidence 5666666666666 22233332111100 00 01122 588
Q ss_pred EEeeccccCcchhhhhcc--CCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEecc
Q 038705 600 YLSVDHCLKLKSLAERLD--NNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYE 677 (861)
Q Consensus 600 ~L~l~~~~~l~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 677 (861)
+|++++|. +..+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|++++|+ ++++
T Consensus 732 ~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~ 791 (876)
T 4ecn_A 732 TIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DAEG 791 (876)
T ss_dssp EEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CTTC
T ss_pred EEECCCCC-CccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------Cccc
Confidence 88888884 447777776 78888888888888776 78788888888888888864 4455
Q ss_pred ccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCccc
Q 038705 678 CEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKS 730 (861)
Q Consensus 678 ~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~ 730 (861)
|.+.+.+|..+.++++|++|++++|. ++.+|.. +.++|+.|+|++|++...
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADNPNISI 842 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSCTTCEE
T ss_pred ccccccChHHHhcCCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCCCCCcc
Confidence 66677777777777778888887774 4666665 446777777777776653
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=329.42 Aligned_cols=224 Identities=13% Similarity=0.120 Sum_probs=160.9
Q ss_pred cccEEEeecccccccchhhh-----hccccccEEEEecccccccccccccccCC---CCccEEEecCCCCccccCCCCCC
Q 038705 499 SLQYLELSQCRYLVKLPQAL-----LSLGFLREMEIYGNLIKEESIQSSSTRYT---SLLEYLYIDDCASLTSLLPKNEL 570 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~ 570 (861)
+|++|++++|.+.+.+|..+ ..+++|+.+++++|.. .+|...+..+ .+|+.|++++|. +..
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~---~~p~~~~~~~~~~~~L~~L~l~~n~-l~~------- 316 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF---GFPQSYIYEIFSNMNIKNFTVSGTR-MVH------- 316 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC---CSCTHHHHHHHHTCCCSEEEEESSC-CCC-------
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce---ecchhhhhcccccCceeEEEcCCCc-ccc-------
Confidence 78888888888877777766 7788888888888733 4442111111 457777777774 111
Q ss_pred CCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcc--cccccccCCCCCcE
Q 038705 571 PATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLI--VLPDGLLKLNHLQE 648 (861)
Q Consensus 571 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~ 648 (861)
.+..+.++ +|++|++++|...+.+|..+..+++|++|++++|.+.+ .+|..+..+++|++
T Consensus 317 -----------------~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 317 -----------------MLCPSKIS-PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp -----------------CCCCSSCC-CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred -----------------ccchhhCC-cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 11012233 68888888887767678888888888888888888776 56677888888888
Q ss_pred EeeccCCCceecCCC-CCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC-CCCCCccEEEecCcc
Q 038705 649 IFISHCPNLISFPDG-GFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED-GFPTNLHSLEIRDMK 726 (861)
Q Consensus 649 L~L~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~-~~~~~L~~L~l~~~~ 726 (861)
|++++|.....+|.. +..+++|+.|++++|.+.+.+|..+. ++|++|++++| .++.+|.. ..+++|++|++++|+
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc
Confidence 888888666656654 55678888888888887777776654 68888888888 56677764 457888888888888
Q ss_pred CcccccccccCCcCCCcCeEEeecCCCccc
Q 038705 727 MWKSLIEWEPLNRFTSLRRLSIHGCQDMVS 756 (861)
Q Consensus 727 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 756 (861)
+.. ++.. .+..+++|++|++++|+....
T Consensus 456 l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 456 LKS-VPDG-IFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCC-CCTT-TTTTCTTCCEEECCSSCBCCC
T ss_pred CCc-cCHH-HhccCCcccEEECcCCCCccc
Confidence 774 4432 277888999999999876543
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.9e-35 Score=338.24 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=50.9
Q ss_pred cCCCCCccEEEEeecCCCC------------------CCcCCCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeec
Q 038705 298 LKPHRNLEELTIRGYGGTT------------------FPTWMGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFII 358 (861)
Q Consensus 298 l~~~~~L~~L~l~~~~~~~------------------~p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l~ 358 (861)
+..+++|++|++++|.... +|..+....+++|++|++++|.+.+.+| .++.+++|+.|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 4556777777777777666 7877751248899999999999888888 78889999999998
Q ss_pred ccc
Q 038705 359 EMT 361 (861)
Q Consensus 359 ~~~ 361 (861)
+|.
T Consensus 282 ~n~ 284 (636)
T 4eco_A 282 CNR 284 (636)
T ss_dssp TCT
T ss_pred CCC
Confidence 886
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.4e-35 Score=334.80 Aligned_cols=128 Identities=22% Similarity=0.191 Sum_probs=79.4
Q ss_pred CCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCcccccc-CcccCCCCccceeeccCCcccccchh-hhcc
Q 038705 88 KRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHV-PSSIGDLKHLQYLDLSETKIKTLPES-VNKL 165 (861)
Q Consensus 88 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L 165 (861)
++|++|.+.++. +....|..|.++++|++|++++|.++.+ |.+|+.+++|++|++++|.++.+|.. |+++
T Consensus 26 ~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNK--------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSC--------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCccEEECcCCc--------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 566666664432 2222223367777777777777777665 35667777777777777777766554 7777
Q ss_pred ccccEEecCCccchh-hchhhhhhccccceeecCCCcccccCc-cccccccccccccceE
Q 038705 166 WNLHTLLLENCHRLK-KLCANMGSLIKLHHLKNSNVKALEEMP-KGIGNLTHLLTLSRFV 223 (861)
Q Consensus 166 ~~L~~L~l~~n~~~~-~lp~~~~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~ 223 (861)
++|++|++++|.+.+ ..|..++++++|++|++++|...+.+| ..++++++|++|++..
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 777777777765443 345566777777777777766445554 3566666666665543
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.7e-34 Score=323.10 Aligned_cols=437 Identities=18% Similarity=0.122 Sum_probs=264.2
Q ss_pred CcccEEEccCccccccC-cccCCCCccceeeccCCccccc-chhhhccccccEEecCCccchhhchhhhhhccccceeec
Q 038705 120 QRLRVLSLRGYSIFHVP-SSIGDLKHLQYLDLSETKIKTL-PESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKN 197 (861)
Q Consensus 120 ~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l 197 (861)
++|++|++++|.++.++ .+|..+++|++|++++|.++.+ |..|+++++|++||+++|. +..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--ccCCccEEec
Confidence 55666666666665553 4556666666666666666544 4456666666666666653 3345544 5666666666
Q ss_pred CCCcccc-cCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhhee
Q 038705 198 SNVKALE-EMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLE 276 (861)
Q Consensus 198 ~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 276 (861)
++|.+.+ .+|..++++++|++|++..+...
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~------------------------------------------------- 128 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLE------------------------------------------------- 128 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-------------------------------------------------
T ss_pred cCCccccccchhhhccCCcceEEEecCcccc-------------------------------------------------
Confidence 6665333 24555556666655544332110
Q ss_pred eccCCCCCCcchhhHHHhhcccCCCCCc--cEEEEeecCC---CCCCcCCCCCCcC-CeeEEEEeCCCCCCCCC--CCCC
Q 038705 277 WTSSTSDDPMEHENVTLMLDGLKPHRNL--EELTIRGYGG---TTFPTWMGDSSFA-NLVLLRFEGCHRCTSLP--SVGQ 348 (861)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~~~-~L~~L~L~~~~~~~~~~--~l~~ 348 (861)
. ..+..+++| +.|+++++.. ...|.++.. +. +...+++++|...+.++ .+..
T Consensus 129 -----~-------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~~~ 188 (520)
T 2z7x_B 129 -----K-------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSVKT 188 (520)
T ss_dssp -----G-------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCCTT
T ss_pred -----h-------------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCcchhhhhhhhhhc
Confidence 0 001112233 5556655543 233444322 11 33455666677666555 4667
Q ss_pred CCCcceeeecccc-------ceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCC
Q 038705 349 LPLLKHLFIIEMT-------SVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPK 421 (861)
Q Consensus 349 l~~L~~L~l~~~~-------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 421 (861)
+++|+.|++++|. ....++ .+ ..+++|+.|+++++ .+.+.....+... ...++|++|++++ +.
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~-~l------~~l~~L~~L~l~~~-~l~~~~~~~~~~~-~~~~~L~~L~l~~-n~ 258 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILA-KL------QTNPKLSNLTLNNI-ETTWNSFIRILQL-VWHTTVWYFSISN-VK 258 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHH-GG------GGCTTCCEEEEEEE-EEEHHHHHHHHHH-HHTSSCSEEEEEE-EE
T ss_pred ccceeeccccccccccccceeecchh-hh------ccccchhhcccccc-ccCHHHHHHHHHH-hhhCcccEEEeec-cc
Confidence 7888888887764 111111 11 23666777766653 2222111100000 0034677777777 46
Q ss_pred CcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCccc
Q 038705 422 LQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQ 501 (861)
Q Consensus 422 l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~ 501 (861)
+.|.+|..+.... ...+ ++|+
T Consensus 259 l~~~~p~~~~~~~-------------~~~l----------------------------------------------~~L~ 279 (520)
T 2z7x_B 259 LQGQLDFRDFDYS-------------GTSL----------------------------------------------KALS 279 (520)
T ss_dssp EESCCCCCCCCCC-------------SCCC----------------------------------------------CEEE
T ss_pred ccCccccchhhcc-------------cccC----------------------------------------------ceeE
Confidence 6666665431100 0111 2677
Q ss_pred EEEeecccccccch-hhhhcc---ccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 502 YLELSQCRYLVKLP-QALLSL---GFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 502 ~L~l~~~~~~~~~~-~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
.+++++|.+ .+| ..+..+ .+|+.|++++|.. ..++. ...+++|++|++++|. ++...+..
T Consensus 280 ~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l--~~~~~--~~~l~~L~~L~Ls~n~-l~~~~~~~--------- 343 (520)
T 2z7x_B 280 IHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM--VHMLC--PSKISPFLHLDFSNNL-LTDTVFEN--------- 343 (520)
T ss_dssp EEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC--CCCCC--CSSCCCCCEEECCSSC-CCTTTTTT---------
T ss_pred eccccccce--ecchhhhhcccccCceeEEEcCCCcc--ccccc--hhhCCcccEEEeECCc-cChhhhhh---------
Confidence 777777776 344 344444 6788888888832 22221 1567788888888873 33211110
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcc--hhhhhccCCCCccEEeeccccCccccccc-ccCCCCCcEEeeccC
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLK--SLAERLDNNSSLEAVKISYCENLIVLPDG-LLKLNHLQEIFISHC 654 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~L~~~ 654 (861)
.+.++ +|++|++++|...+ .+|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|
T Consensus 344 -------------~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 344 -------------CGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp -------------CCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred -------------hccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 12333 68999999986654 66778899999999999999988866654 788999999999999
Q ss_pred CCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccc
Q 038705 655 PNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSL 731 (861)
Q Consensus 655 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~ 731 (861)
...+.+|..+. ++|+.|++++|.+. .+|..+..+++|++|++++| .++.+|.. ..+++|++|++++|++....
T Consensus 410 ~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 410 ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 87777776543 69999999999855 78888889999999999999 57778875 34789999999999987643
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-32 Score=322.53 Aligned_cols=205 Identities=21% Similarity=0.130 Sum_probs=146.8
Q ss_pred CcccEEEeeccccc--ccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcc
Q 038705 498 CSLQYLELSQCRYL--VKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLE 575 (861)
Q Consensus 498 ~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 575 (861)
++|+.++++.|.+. +..+..+..+.+|+.+++..+ .....+. .+..+++|+.+++.++..... .+.
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~--~~~~~~~-~~~~l~~L~~l~l~~~~~~~~-~~~-------- 438 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN--GVITMSS-NFLGLEQLEHLDFQHSNLKQM-SEF-------- 438 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC--SEEEECS-CCTTCTTCCEEECTTSEEEST-TSS--------
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhcccc--ccccccc-cccccccccchhhhhcccccc-ccc--------
Confidence 37778888777764 334556667778888888777 2222222 235567777777776632111 000
Q ss_pred EEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcc-cccccccCCCCCcEEeeccC
Q 038705 576 HLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLI-VLPDGLLKLNHLQEIFISHC 654 (861)
Q Consensus 576 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~ 654 (861)
.....+ .+++.+++++|......+..+..+++|+.|++++|...+ .+|..+..+++|++|++++|
T Consensus 439 -------------~~~~~l-~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N 504 (635)
T 4g8a_A 439 -------------SVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504 (635)
T ss_dssp -------------CTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred -------------cccccc-cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence 001122 268888888887767777778888999999999987554 46788888999999999999
Q ss_pred CCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCC---CCCCccEEEecCccCcc
Q 038705 655 PNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDG---FPTNLHSLEIRDMKMWK 729 (861)
Q Consensus 655 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~---~~~~L~~L~l~~~~~~~ 729 (861)
...+..|..+..+++|++|++++|++.+..|..+.++++|++|++++| .+..++... ++++|++|++++|++.-
T Consensus 505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 776766777888899999999999877777778889999999999999 455555442 34789999999988753
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-32 Score=322.71 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=67.8
Q ss_pred hhhccCCCCcccEEEccCccccc------------------cCcccC--CCCccceeeccCCccc-ccchhhhccccccE
Q 038705 112 VLYMLFKLQRLRVLSLRGYSIFH------------------VPSSIG--DLKHLQYLDLSETKIK-TLPESVNKLWNLHT 170 (861)
Q Consensus 112 ~~~~~~~l~~L~~L~L~~~~i~~------------------lp~~~~--~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~ 170 (861)
+|..|.++++|++|+|++|.++. +|..++ ++++|++|+|++|.+. .+|..|+++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 44456666666666666666665 666655 6666666666666544 56666666666666
Q ss_pred EecCCcc-chh-hchhhhhhcc-------ccceeecCCCcccccCcc--ccccccccccccc
Q 038705 171 LLLENCH-RLK-KLCANMGSLI-------KLHHLKNSNVKALEEMPK--GIGNLTHLLTLSR 221 (861)
Q Consensus 171 L~l~~n~-~~~-~lp~~~~~L~-------~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~ 221 (861)
|++++|. +.+ .+|..++.++ +|++|++++|.+. .+|. .++++++|+.|++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence 6666665 444 5666666655 6666666666633 6665 5666666666543
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-31 Score=307.57 Aligned_cols=465 Identities=15% Similarity=0.057 Sum_probs=243.5
Q ss_pred ccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccC-cccCCCCccceeeccCCccccc-chhhh
Q 038705 86 DAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVP-SSIGDLKHLQYLDLSETKIKTL-PESVN 163 (861)
Q Consensus 86 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~i~~l-p~~i~ 163 (861)
.+...+++.+.++. ...+|..+. ++|++|++++|.++.+| .+|..+++|++|+|++|.|+.+ |..|+
T Consensus 29 ~~~~~~~l~ls~~~---------L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 97 (562)
T 3a79_B 29 SNELESMVDYSNRN---------LTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL 97 (562)
T ss_dssp ----CCEEECTTSC---------CCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred ccCCCcEEEcCCCC---------CccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence 34445777665432 234666543 67888888888888774 5788888888888888888876 45688
Q ss_pred ccccccEEecCCccchhhchhhhhhccccceeecCCCcccc-cCccccccccccccccceEecccCCCCccccccccccc
Q 038705 164 KLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALE-EMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQ 242 (861)
Q Consensus 164 ~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~ 242 (861)
++++|++||+++|. +..+|.. .+++|++|++++|.+.+ .+|..++++++|++|++..+.
T Consensus 98 ~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~----------------- 157 (562)
T 3a79_B 98 FNQDLEYLDVSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK----------------- 157 (562)
T ss_dssp TCTTCCEEECTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-----------------
T ss_pred CCCCCCEEECCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-----------------
Confidence 88888888888875 4467765 78888888888888443 234677777777777543321
Q ss_pred ceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCC--C-CCCc
Q 038705 243 GTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGG--T-TFPT 319 (861)
Q Consensus 243 ~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~-~~p~ 319 (861)
+... .+.. +..+ +|+.|+++++.. . ..|.
T Consensus 158 -------l~~~---------~~~~-------------------------------l~~L-~L~~L~L~~n~l~~~~~~~~ 189 (562)
T 3a79_B 158 -------FRQL---------DLLP-------------------------------VAHL-HLSCILLDLVSYHIKGGETE 189 (562)
T ss_dssp -------CCTT---------TTGG-------------------------------GTTS-CEEEEEEEESSCCCCSSSCC
T ss_pred -------cccC---------chhh-------------------------------hhhc-eeeEEEeecccccccccCcc
Confidence 1000 0111 1111 336666666554 2 2233
Q ss_pred CCCCCCcCCeeEEEEeCCCCCCCCC--CCCCCCCcceeeeccccc----eeEECccccCCcCcCCCCCcceEeccccccc
Q 038705 320 WMGDSSFANLVLLRFEGCHRCTSLP--SVGQLPLLKHLFIIEMTS----VKMVGSEFYGNHCSVPFPSLETLCFQDIQEW 393 (861)
Q Consensus 320 ~~~~~~~~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~l~~~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 393 (861)
++.......+ .+++++|.+.+.++ .+..+++|+.|++++|.. +......+ ...++|+.+++.++ .+
T Consensus 190 ~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l------~~l~~L~~L~L~~~-~l 261 (562)
T 3a79_B 190 SLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL------TRGPTLLNVTLQHI-ET 261 (562)
T ss_dssp EEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHH------HSCSSCEEEEEEEE-EE
T ss_pred cccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHH------hccCcceEEEecCC-cC
Confidence 3221111122 45666666655554 345666777777766521 00000011 11344444444432 11
Q ss_pred cccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEccCCCCcccccccc
Q 038705 394 EGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDV 473 (861)
Q Consensus 394 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 473 (861)
.+......... ...++|++|++++ +.++|.+|..+.... .
T Consensus 262 ~~~~~~~~~~~-~~~~~L~~L~l~~-n~l~~~ip~~~~~~~----------------~---------------------- 301 (562)
T 3a79_B 262 TWKCSVKLFQF-FWPRPVEYLNIYN-LTITERIDREEFTYS----------------E---------------------- 301 (562)
T ss_dssp CHHHHHHHHHH-HTTSSEEEEEEEE-EEECSCCCCCCCCCC----------------S----------------------
T ss_pred cHHHHHHHHHh-hhcccccEEEEec-cEeeccccchhhhcc----------------c----------------------
Confidence 11000000000 0023455555555 244444443320000 0
Q ss_pred cccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEeccccccccccccccc---CCCCc
Q 038705 474 NRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTR---YTSLL 550 (861)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L 550 (861)
..++.|+.+++..+.. .+|..... ...+|
T Consensus 302 ---------------------------------------------~~L~~L~~~~~~~~~~---~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 302 ---------------------------------------------TALKSLMIEHVKNQVF---LFSKEALYSVFAEMNI 333 (562)
T ss_dssp ---------------------------------------------CSCCEEEEEEEEECCC---SSCHHHHHHHHHTCCC
T ss_pred ---------------------------------------------ccchheehhhccccee---ecChhhhhhhhccCcc
Confidence 2222222222222211 11100000 01234
Q ss_pred cEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccc
Q 038705 551 EYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYC 630 (861)
Q Consensus 551 ~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~ 630 (861)
++|++++|.. .. ....+..+ +|++|++++|...+.+|..+..+++|++|++++|
T Consensus 334 ~~L~l~~n~~-~~------------------------~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 334 KMLSISDTPF-IH------------------------MVCPPSPS-SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp SEEEEESSCC-CC------------------------CCCCSSCC-CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred eEEEccCCCc-cc------------------------ccCccCCC-CceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 4444444320 00 00001122 4666666666555555666666677777777776
Q ss_pred cCcc--cccccccCCCCCcEEeeccCCCceecCCC-CCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcc
Q 038705 631 ENLI--VLPDGLLKLNHLQEIFISHCPNLISFPDG-GFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVY 707 (861)
Q Consensus 631 ~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~ 707 (861)
.+.+ .+|..+.++++|++|++++|.....+|.. +..+++|++|++++|.+.+.+|..+. ++|++|++++| .++.
T Consensus 388 ~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ 464 (562)
T 3a79_B 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMS 464 (562)
T ss_dssp CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCC
T ss_pred CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcc
Confidence 6554 33455666777777777777555445543 44566777777777776665555443 56777777777 5556
Q ss_pred cCCC-CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCccc
Q 038705 708 FPED-GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMVS 756 (861)
Q Consensus 708 ~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 756 (861)
+|.. ..+++|++|++++|++.+ ++.. .+..+++|+.|++++|+....
T Consensus 465 ip~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 465 IPKDVTHLQALQELNVASNQLKS-VPDG-VFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCTTTTSSCCCSEEECCSSCCCC-CCTT-STTTCTTCCCEECCSCCBCCC
T ss_pred cChhhcCCCCCCEEECCCCCCCC-CCHH-HHhcCCCCCEEEecCCCcCCC
Confidence 6654 336677777777777663 3322 267778888888888865443
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=2.4e-31 Score=310.95 Aligned_cols=246 Identities=19% Similarity=0.126 Sum_probs=168.7
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccC-C-CCCCCCCccE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLL-P-KNELPATLEH 576 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~-~~~~~~~L~~ 576 (861)
+++.|++.+|.+....+ ..+..|+.+.+.+| .....+.. ..+++|+.+++++|....... + ......+|+.
T Consensus 329 ~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n--~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 401 (635)
T 4g8a_A 329 GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSN--KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKY 401 (635)
T ss_dssp CCSEEEEESCEESSCCC---CBCTTCCEEEEESC--CSCCBCCC--CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCE
T ss_pred hhhhhhcccccccCcCc---ccchhhhhcccccc--cCCCCccc--ccccccccchhhccccccccccccchhhhhhhhh
Confidence 45555555554433221 23445555555555 11111111 234555555555553211100 0 0111345555
Q ss_pred EEEecCCCcccccccCCCcccCcEEeeccccCcchhh-hhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCC
Q 038705 577 LHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLA-ERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCP 655 (861)
Q Consensus 577 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 655 (861)
+++..+......+.....+ +|+.+++.++......+ ..+..+++++.+++++|.+.+..+..+..+++|+.|++++|.
T Consensus 402 L~~~~~~~~~~~~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~ 480 (635)
T 4g8a_A 402 LDLSFNGVITMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 480 (635)
T ss_dssp EECCSCSEEEECSCCTTCT-TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred hhccccccccccccccccc-cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence 5554443222222122333 79999999886665544 356789999999999999999889999999999999999997
Q ss_pred Cce-ecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCccccc
Q 038705 656 NLI-SFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLI 732 (861)
Q Consensus 656 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~ 732 (861)
... ..|..+..+++|++|++++|.+.+..|..+.++++|++|+|++| .++.++.. ..+++|++|++++|++.+..+
T Consensus 481 ~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred cccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 554 46777888999999999999988888899999999999999999 67777665 447999999999999988777
Q ss_pred ccccCCcC-CCcCeEEeecCCCcc
Q 038705 733 EWEPLNRF-TSLRRLSIHGCQDMV 755 (861)
Q Consensus 733 ~~~~~~~l-~~L~~L~l~~~~~~~ 755 (861)
.. +..+ ++|+.|++++|+...
T Consensus 560 ~~--l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 560 QE--LQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp SC--TTCCCTTCCEEECTTCCBCC
T ss_pred HH--HHhhhCcCCEEEeeCCCCcc
Confidence 65 7887 689999999997643
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=4.1e-31 Score=291.46 Aligned_cols=417 Identities=21% Similarity=0.238 Sum_probs=203.1
Q ss_pred CCCcccEEEccCccccccCcccCCCCccceeeccCCccc-ccchhhhccccccEEecCCccchhhchhhhhhccccceee
Q 038705 118 KLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIK-TLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLK 196 (861)
Q Consensus 118 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~-~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~ 196 (861)
+.++|++|++++|.++.+|.+|+++++|++|++++|.+. .+|.+++++++|+++++++|. ..++++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEEE
Confidence 457899999999999989999999999999999999887 889999999998888877763 15678888
Q ss_pred cCCCcccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhhee
Q 038705 197 NSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLE 276 (861)
Q Consensus 197 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 276 (861)
+++|. ...+|.. .++|++|++.
T Consensus 78 l~~~~-l~~lp~~---~~~L~~L~l~------------------------------------------------------ 99 (454)
T 1jl5_A 78 LNNLG-LSSLPEL---PPHLESLVAS------------------------------------------------------ 99 (454)
T ss_dssp CTTSC-CSCCCSC---CTTCSEEECC------------------------------------------------------
T ss_pred ecCCc-cccCCCC---cCCCCEEEcc------------------------------------------------------
Confidence 88887 4455542 2344444321
Q ss_pred eccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceee
Q 038705 277 WTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLF 356 (861)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~ 356 (861)
+|.... .+ ..+++|+.|++++|....+|.+ .++|++|++++|.+.+ +|.++.+++|++|+
T Consensus 100 ~n~l~~-lp-------------~~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~ 159 (454)
T 1jl5_A 100 CNSLTE-LP-------------ELPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKIID 159 (454)
T ss_dssp SSCCSS-CC-------------CCCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEE
T ss_pred CCcCCc-cc-------------cccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEEE
Confidence 111110 00 0125677777777766665543 2578888888887765 66778888888888
Q ss_pred eccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceE
Q 038705 357 IIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERL 436 (861)
Q Consensus 357 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L 436 (861)
+++|... .++ ..+++|++|++++ +.+.++. .+.. +++|+.|++++ +.++ .+|...+
T Consensus 160 l~~N~l~-~lp---------~~~~~L~~L~L~~-n~l~~l~--~~~~----l~~L~~L~l~~-N~l~-~l~~~~~----- 215 (454)
T 1jl5_A 160 VDNNSLK-KLP---------DLPPSLEFIAAGN-NQLEELP--ELQN----LPFLTAIYADN-NSLK-KLPDLPL----- 215 (454)
T ss_dssp CCSSCCS-CCC---------CCCTTCCEEECCS-SCCSSCC--CCTT----CTTCCEEECCS-SCCS-SCCCCCT-----
T ss_pred CCCCcCc-ccC---------CCcccccEEECcC-CcCCcCc--cccC----CCCCCEEECCC-CcCC-cCCCCcC-----
Confidence 8777432 121 1134677777766 3455432 3443 67777777777 4555 3443333
Q ss_pred EEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchh
Q 038705 437 VVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQ 516 (861)
Q Consensus 437 ~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~ 516 (861)
+|++|++++|.+. .+|
T Consensus 216 --------------------------------------------------------------~L~~L~l~~n~l~-~lp- 231 (454)
T 1jl5_A 216 --------------------------------------------------------------SLESIVAGNNILE-ELP- 231 (454)
T ss_dssp --------------------------------------------------------------TCCEEECCSSCCS-SCC-
T ss_pred --------------------------------------------------------------cccEEECcCCcCC-ccc-
Confidence 3444444444433 233
Q ss_pred hhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcc
Q 038705 517 ALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPK 596 (861)
Q Consensus 517 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 596 (861)
.++.+++|++|++++| .+..++. .+++|++|++++| .++. ++. .+++|+.|+++++. ++.++ .+|+
T Consensus 232 ~~~~l~~L~~L~l~~N--~l~~l~~----~~~~L~~L~l~~N-~l~~-l~~--~~~~L~~L~ls~N~-l~~l~---~~~~ 297 (454)
T 1jl5_A 232 ELQNLPFLTTIYADNN--LLKTLPD----LPPSLEALNVRDN-YLTD-LPE--LPQSLTFLDVSENI-FSGLS---ELPP 297 (454)
T ss_dssp CCTTCTTCCEEECCSS--CCSSCCS----CCTTCCEEECCSS-CCSC-CCC--CCTTCCEEECCSSC-CSEES---CCCT
T ss_pred ccCCCCCCCEEECCCC--cCCcccc----cccccCEEECCCC-cccc-cCc--ccCcCCEEECcCCc-cCccc---CcCC
Confidence 2444445555555544 2222321 1244555555544 2222 111 12445555554432 22222 3445
Q ss_pred cCcEEeeccccCcchhhhhccCC-CCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEe
Q 038705 597 ALKYLSVDHCLKLKSLAERLDNN-SSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWI 675 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 675 (861)
+|++|++++|... .++ .+ ++|++|++++|.+.+ +|.. +++|++|++++|. +..+|. .+++|++|++
T Consensus 298 ~L~~L~l~~N~l~-~i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L 364 (454)
T 1jl5_A 298 NLYYLNASSNEIR-SLC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNH-LAEVPE---LPQNLKQLHV 364 (454)
T ss_dssp TCCEEECCSSCCS-EEC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEEC
T ss_pred cCCEEECcCCcCC-ccc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCc-cccccc---hhhhccEEEC
Confidence 7888888888443 232 23 478888888887665 5554 5788888888884 445766 3578888888
Q ss_pred ccccCcc--cccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcc--cccccccCCcCCCcCeEEeecC
Q 038705 676 YECEKLK--ALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWK--SLIEWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 676 ~~~~~~~--~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~ 751 (861)
++|++.+ .+|.++..+ ..|.....+|. .+++|+.|++++|++.+ .+| +.++.|.+.+|
T Consensus 365 ~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~--~~~~L~~L~ls~N~l~~~~~iP--------~sl~~L~~~~~ 426 (454)
T 1jl5_A 365 EYNPLREFPDIPESVEDL--------RMNSHLAEVPE--LPQNLKQLHVETNPLREFPDIP--------ESVEDLRMNSE 426 (454)
T ss_dssp CSSCCSSCCCCCTTCCEE--------ECCC--------------------------------------------------
T ss_pred CCCCCCcCCCChHHHHhh--------hhccccccccc--ccCcCCEEECCCCcCCccccch--------hhHhheeCcCc
Confidence 8888766 566554432 22334444443 35677888888877765 333 24566667776
Q ss_pred CCccc
Q 038705 752 QDMVS 756 (861)
Q Consensus 752 ~~~~~ 756 (861)
.....
T Consensus 427 ~~~~~ 431 (454)
T 1jl5_A 427 RVVDP 431 (454)
T ss_dssp -----
T ss_pred ccCCc
Confidence 54443
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.5e-30 Score=297.76 Aligned_cols=249 Identities=16% Similarity=0.120 Sum_probs=163.4
Q ss_pred ceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhh-ccCCCCcccEEEccCcccccc-CcccCC
Q 038705 64 NLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLY-MLFKLQRLRVLSLRGYSIFHV-PSSIGD 141 (861)
Q Consensus 64 ~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~i~~l-p~~~~~ 141 (861)
..+++.+.++.+..+. ..+ .++|++|.+.++. + ..+++ .|.++++|++|+|++|.++.+ |.+|..
T Consensus 32 ~~~~l~ls~~~L~~ip--~~~--~~~L~~L~Ls~N~--------i-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 98 (562)
T 3a79_B 32 LESMVDYSNRNLTHVP--KDL--PPRTKALSLSQNS--------I-SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98 (562)
T ss_dssp -CCEEECTTSCCCSCC--TTS--CTTCCEEECCSSC--------C-CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT
T ss_pred CCcEEEcCCCCCccCC--CCC--CCCcCEEECCCCC--------c-cccChhhhccCCCccEEECCCCCCCcCCHHHhCC
Confidence 3478888888766432 223 2789999886543 2 34554 499999999999999999987 778999
Q ss_pred CCccceeeccCCcccccchhhhccccccEEecCCccchh-hchhhhhhccccceeecCCCcccccCcccccccccc--cc
Q 038705 142 LKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLK-KLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHL--LT 218 (861)
Q Consensus 142 L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~-~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~ 218 (861)
+++|++|+|++|.++.+|.. .+++|++|++++|.+.+ ..|..|+++++|++|++++|.+.. ..++.+++| ++
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~ 173 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSC 173 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEE
T ss_pred CCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeE
Confidence 99999999999999999877 89999999999986554 346789999999999999998543 245555555 88
Q ss_pred ccceEeccc-CCCCcccccccc--cccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhh
Q 038705 219 LSRFVVGKD-VGSGLRTLKLLK--HLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLML 295 (861)
Q Consensus 219 L~~~~~~~~-~~~~~~~l~~l~--~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 295 (861)
|++..+... .......+..++ .+. +.+..-..... .....+..+.+|+.+++++|.. .........
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~--l~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~~------~~~~l~~~~ 242 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLH--LVFHPNSLFSV---QVNMSVNALGHLQLSNIKLNDE------NCQRLMTFL 242 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEE--EEECSSSCCCC---CCEEEESSEEEEEEEEEECCST------THHHHHHHH
T ss_pred EEeecccccccccCcccccccCcceEE--EEecCccchhh---hhhhcccccceEEEeccccccc------ccchHHHHH
Confidence 887776541 122222333322 121 22211110000 0011244667888888887531 111223334
Q ss_pred cccCCCCCccEEEEeecCCC-----CCCcCCCCCCcCCeeEEEEeCCCCCCCCC
Q 038705 296 DGLKPHRNLEELTIRGYGGT-----TFPTWMGDSSFANLVLLRFEGCHRCTSLP 344 (861)
Q Consensus 296 ~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~~~~L~~L~L~~~~~~~~~~ 344 (861)
..+...++|+.+++.++... .++.+.. .++|++|++++|.+.+.+|
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~ip 293 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFW---PRPVEYLNIYNLTITERID 293 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT---TSSEEEEEEEEEEECSCCC
T ss_pred HHHhccCcceEEEecCCcCcHHHHHHHHHhhh---cccccEEEEeccEeecccc
Confidence 45666788888888776532 1222221 3489999999998887777
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=7.2e-31 Score=289.49 Aligned_cols=176 Identities=22% Similarity=0.191 Sum_probs=100.2
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+|++|++++|.+.+ +|.. .++|++|++++| .+..+|. +..+++|++|++++|. ++.
T Consensus 196 ~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n--~l~~lp~--~~~l~~L~~L~l~~N~-l~~--------------- 251 (454)
T 1jl5_A 196 FLTAIYADNNSLKK-LPDL---PLSLESIVAGNN--ILEELPE--LQNLPFLTTIYADNNL-LKT--------------- 251 (454)
T ss_dssp TCCEEECCSSCCSS-CCCC---CTTCCEEECCSS--CCSSCCC--CTTCTTCCEEECCSSC-CSS---------------
T ss_pred CCCEEECCCCcCCc-CCCC---cCcccEEECcCC--cCCcccc--cCCCCCCCEEECCCCc-CCc---------------
Confidence 56666666666553 2211 246666666666 2334443 3556666666666652 222
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCce
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLI 658 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 658 (861)
++ ..+++|++|++++|. ++.+|.. .++|++|++++|.+.+ +|.. .++|++|++++|...
T Consensus 252 ---------l~---~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~- 310 (454)
T 1jl5_A 252 ---------LP---DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIR- 310 (454)
T ss_dssp ---------CC---SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCS-
T ss_pred ---------cc---ccccccCEEECCCCc-ccccCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCC-
Confidence 22 122357777777664 3334432 3667777777776554 2211 256777777777433
Q ss_pred ecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcc
Q 038705 659 SFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWK 729 (861)
Q Consensus 659 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~ 729 (861)
.++.. .++|++|++++|.+.+ +|.. +++|++|++++| .++.+|. .+++|++|++++|++.+
T Consensus 311 ~i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 311 SLCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp EECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSS
T ss_pred cccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCC-ccccccc--hhhhccEEECCCCCCCc
Confidence 33321 1467777777776543 5443 467777777777 4556665 56777777777777766
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=3e-29 Score=279.87 Aligned_cols=385 Identities=15% Similarity=0.065 Sum_probs=223.3
Q ss_pred cEEEccCccccccCcccCCCCccceeeccCCccccc-chhhhccccccEEecCCccchhhc-hhhhhhccccceeecCCC
Q 038705 123 RVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTL-PESVNKLWNLHTLLLENCHRLKKL-CANMGSLIKLHHLKNSNV 200 (861)
Q Consensus 123 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~n~~~~~l-p~~~~~L~~L~~L~l~~~ 200 (861)
+.++.+++.++.+|. +. ++|++|+|++|.|+.+ |..|+++++|++|++++|...+.+ |..|..+++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 455666666666665 32 5677777777776655 455677777777777766544344 345666777777777776
Q ss_pred cccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccC
Q 038705 201 KALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSS 280 (861)
Q Consensus 201 ~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 280 (861)
.+.+..|..++++++|++|++..+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n-------------------------------------------------------- 113 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQC-------------------------------------------------------- 113 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTS--------------------------------------------------------
T ss_pred ccCccChhhccCcccCCEEeCCCC--------------------------------------------------------
Confidence 644444555555555555422111
Q ss_pred CCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCC-CC--cCCCCCCcCCeeEEEEeCCCCCCCCCC--CCCCCCccee
Q 038705 281 TSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTT-FP--TWMGDSSFANLVLLRFEGCHRCTSLPS--VGQLPLLKHL 355 (861)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p--~~~~~~~~~~L~~L~L~~~~~~~~~~~--l~~l~~L~~L 355 (861)
.... .| .++ ..+++|++|++++|.+.+..|. ++.+++|++|
T Consensus 114 --------------------------------~l~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 114 --------------------------------NLDGAVLSGNFF--KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp --------------------------------CCBTHHHHSSTT--TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred --------------------------------CCCccccCcccc--cCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 0000 00 011 2366788888888887776563 6677777777
Q ss_pred eeccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcce
Q 038705 356 FIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLER 435 (861)
Q Consensus 356 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~ 435 (861)
++++|... +..+..+.... .++|+.|++++ +.+. .++.......
T Consensus 160 ~L~~n~l~-------------------------------~~~~~~l~~l~--~~~L~~L~l~~-n~l~-~~~~~~~~~~- 203 (455)
T 3v47_A 160 DLTFNKVK-------------------------------SICEEDLLNFQ--GKHFTLLRLSS-ITLQ-DMNEYWLGWE- 203 (455)
T ss_dssp ECTTCCBS-------------------------------CCCTTTSGGGT--TCEEEEEECTT-CBCT-TCSTTCTTHH-
T ss_pred eCCCCccc-------------------------------ccChhhhhccc--ccccccccccc-Cccc-ccchhhcccc-
Confidence 77766422 11111121100 36778888887 3554 2221100000
Q ss_pred EEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccch
Q 038705 436 LVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLP 515 (861)
Q Consensus 436 L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~ 515 (861)
. ...+..+ ++|++|++++|.+.+..+
T Consensus 204 ----~-------------------------------------------------~~~~~~~-~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 204 ----K-------------------------------------------------CGNPFKN-TSITTLDLSGNGFKESMA 229 (455)
T ss_dssp ----H-------------------------------------------------HCCTTTT-CEEEEEECTTSCCCHHHH
T ss_pred ----c-------------------------------------------------ccccccc-ceeeeEecCCCcccccch
Confidence 0 0000011 378899999998888777
Q ss_pred hhhhcc---ccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccC
Q 038705 516 QALLSL---GFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVG 592 (861)
Q Consensus 516 ~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 592 (861)
..+... ++|+.|++++|......+... .+. ......+.+
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~~---------------------~~~~~~~~~ 271 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHT-----------------NFK---------------------DPDNFTFKG 271 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCC-----------------SSC---------------------CCCTTTTGG
T ss_pred hhhhccccccceeeEeeccccccccccchh-----------------hhc---------------------cCccccccc
Confidence 766654 778888888772211111000 000 000001111
Q ss_pred CCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccE
Q 038705 593 NLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTK 672 (861)
Q Consensus 593 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 672 (861)
...++|++|++++|...+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|......|..+..+++|++
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 11136888888888766666777777888888888888777777777777888888888887655555556666777777
Q ss_pred EEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcc
Q 038705 673 LWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWK 729 (861)
Q Consensus 673 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~ 729 (861)
|++++|.+.+..|..+..+++|++|++++| .++.++.. ..+++|++|++++|++..
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence 777777766666777777777777777777 45555543 224455555555555433
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=9.6e-29 Score=272.77 Aligned_cols=358 Identities=17% Similarity=0.134 Sum_probs=222.4
Q ss_pred ccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccce
Q 038705 115 MLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHH 194 (861)
Q Consensus 115 ~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~ 194 (861)
.+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+| ++.+++|++|++++|.+.+ +| ++.+++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCE
Confidence 4677888888888888888876 6888888888888888888876 7888888888888875433 44 778888888
Q ss_pred eecCCCcccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhh
Q 038705 195 LKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLL 274 (861)
Q Consensus 195 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 274 (861)
|++++|. +..+| ++.+++|++|+
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~------------------------------------------------------ 133 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLN------------------------------------------------------ 133 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEE------------------------------------------------------
T ss_pred EECCCCc-CCeec--CCCCCcCCEEE------------------------------------------------------
Confidence 8888887 33333 44444444332
Q ss_pred eeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcce
Q 038705 275 LEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKH 354 (861)
Q Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~ 354 (861)
+++|....++ + ..+++|+.|++++|...+.+ .++.+++|+.
T Consensus 134 ----------------------------------l~~N~l~~l~--l--~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~ 174 (457)
T 3bz5_A 134 ----------------------------------CARNTLTEID--V--SHNTQLTELDCHLNKKITKL-DVTPQTQLTT 174 (457)
T ss_dssp ----------------------------------CTTSCCSCCC--C--TTCTTCCEEECTTCSCCCCC-CCTTCTTCCE
T ss_pred ----------------------------------CCCCccceec--c--ccCCcCCEEECCCCCccccc-ccccCCcCCE
Confidence 2222221111 1 12445555555555433333 2344455555
Q ss_pred eeeccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcc
Q 038705 355 LFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLE 434 (861)
Q Consensus 355 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~ 434 (861)
|++++|. ++++. +.. +++|+.|++++ +.++ .++ +..
T Consensus 175 L~ls~n~-------------------------------l~~l~---l~~----l~~L~~L~l~~-N~l~-~~~--l~~-- 210 (457)
T 3bz5_A 175 LDCSFNK-------------------------------ITELD---VSQ----NKLLNRLNCDT-NNIT-KLD--LNQ-- 210 (457)
T ss_dssp EECCSSC-------------------------------CCCCC---CTT----CTTCCEEECCS-SCCS-CCC--CTT--
T ss_pred EECCCCc-------------------------------cceec---ccc----CCCCCEEECcC-CcCC-eec--ccc--
Confidence 5554442 11110 111 55566666665 3443 111 000
Q ss_pred eEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccc
Q 038705 435 RLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKL 514 (861)
Q Consensus 435 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~ 514 (861)
+ ++|++|++++|.+.+ +
T Consensus 211 ----------------l----------------------------------------------~~L~~L~Ls~N~l~~-i 227 (457)
T 3bz5_A 211 ----------------N----------------------------------------------IQLTFLDCSSNKLTE-I 227 (457)
T ss_dssp ----------------C----------------------------------------------TTCSEEECCSSCCSC-C
T ss_pred ----------------C----------------------------------------------CCCCEEECcCCcccc-c
Confidence 0 256666666666655 3
Q ss_pred hhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCC
Q 038705 515 PQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNL 594 (861)
Q Consensus 515 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 594 (861)
| +..+++|+.|++++| .+..++. ..+++|+.|+++++
T Consensus 228 p--~~~l~~L~~L~l~~N--~l~~~~~---~~l~~L~~L~l~~n------------------------------------ 264 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVN--PLTELDV---STLSKLTTLHCIQT------------------------------------ 264 (457)
T ss_dssp C--CTTCTTCSEEECCSS--CCSCCCC---TTCTTCCEEECTTC------------------------------------
T ss_pred C--ccccCCCCEEEeeCC--cCCCcCH---HHCCCCCEEeccCC------------------------------------
Confidence 3 566677777777777 2223321 34455555555443
Q ss_pred cccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEE
Q 038705 595 PKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLW 674 (861)
Q Consensus 595 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 674 (861)
+|+.|++++|...+.+| ++.+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|+
T Consensus 265 --~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~ 324 (457)
T 3bz5_A 265 --DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLY 324 (457)
T ss_dssp --CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEE
T ss_pred --CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEE
Confidence 36666677776666665 45678888888888887777774 3466777766665 5788888
Q ss_pred eccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCc
Q 038705 675 IYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDM 754 (861)
Q Consensus 675 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 754 (861)
+++|.+.+ + .++.+++|+.|++++| .+..+ +.|+.|++++|.+.+. ..+..|+.+++++|...
T Consensus 325 L~~N~l~~-l--~l~~l~~L~~L~l~~N-~l~~l------~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 325 LNNTELTE-L--DVSHNTKLKSLSCVNA-HIQDF------SSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLT 387 (457)
T ss_dssp CTTCCCSC-C--CCTTCTTCSEEECCSS-CCCBC------TTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEE
T ss_pred CCCCcccc-c--ccccCCcCcEEECCCC-CCCCc------cccccccccCCcEEec-------ceeeecCccccccCcEE
Confidence 88888666 4 2788889999999888 44443 4677777877776554 23456778889998887
Q ss_pred cccCCCc
Q 038705 755 VSFPQDN 761 (861)
Q Consensus 755 ~~~~~~~ 761 (861)
+.+|.+.
T Consensus 388 g~ip~~~ 394 (457)
T 3bz5_A 388 IAVSPDL 394 (457)
T ss_dssp EECCTTC
T ss_pred EEcChhH
Confidence 8887654
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=4e-28 Score=267.81 Aligned_cols=359 Identities=17% Similarity=0.082 Sum_probs=221.5
Q ss_pred hhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchh
Q 038705 82 EVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPES 161 (861)
Q Consensus 82 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~ 161 (861)
..+.++++||+|.+.++. + ..+| .|..+++|++|++++|.++.+| ++.+++|++|++++|.++.+|
T Consensus 36 ~~~~~l~~L~~L~Ls~n~--------l-~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSS--------I-TDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp EEHHHHTTCCEEECCSSC--------C-CCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred cChhHcCCCCEEEccCCC--------c-ccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--
Confidence 346678999999886543 2 2333 6889999999999999999886 899999999999999999886
Q ss_pred hhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCccccccccccccccceEecccCCCCcccccccccc
Q 038705 162 VNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHL 241 (861)
Q Consensus 162 i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L 241 (861)
++++++|++|++++|.+. .+| ++.+++|++|++++|.+. .++ ++++++|++|++..+...
T Consensus 102 ~~~l~~L~~L~L~~N~l~-~l~--~~~l~~L~~L~l~~N~l~-~l~--l~~l~~L~~L~l~~n~~~-------------- 161 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKI-------------- 161 (457)
T ss_dssp CTTCTTCCEEECCSSCCS-CCC--CTTCTTCCEEECTTSCCS-CCC--CTTCTTCCEEECTTCSCC--------------
T ss_pred cCCCCcCCEEECCCCcCC-eec--CCCCCcCCEEECCCCccc-eec--cccCCcCCEEECCCCCcc--------------
Confidence 899999999999998644 455 899999999999999843 343 666666666643221000
Q ss_pred cceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCC
Q 038705 242 QGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWM 321 (861)
Q Consensus 242 ~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 321 (861)
. .+ .+..+++|+.|+++++....+| +
T Consensus 162 ------------~-----------------~~-----------------------~~~~l~~L~~L~ls~n~l~~l~--l 187 (457)
T 3bz5_A 162 ------------T-----------------KL-----------------------DVTPQTQLTTLDCSFNKITELD--V 187 (457)
T ss_dssp ------------C-----------------CC-----------------------CCTTCTTCCEEECCSSCCCCCC--C
T ss_pred ------------c-----------------cc-----------------------ccccCCcCCEEECCCCccceec--c
Confidence 0 00 0223455666666666555554 2
Q ss_pred CCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCC
Q 038705 322 GDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGS 401 (861)
Q Consensus 322 ~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 401 (861)
..+++|+.|++++|.+.+. .++.+++|+.|++++| .+.++. +
T Consensus 188 --~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N-------------------------------~l~~ip---~ 229 (457)
T 3bz5_A 188 --SQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSN-------------------------------KLTEID---V 229 (457)
T ss_dssp --TTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSS-------------------------------CCSCCC---C
T ss_pred --ccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCC-------------------------------cccccC---c
Confidence 2356666666666655442 2444555555555544 333321 2
Q ss_pred CCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccc
Q 038705 402 GKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLL 481 (861)
Q Consensus 402 ~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 481 (861)
.. +++|+.|++++ +.+++..+..+++|+.|. +++
T Consensus 230 ~~----l~~L~~L~l~~-N~l~~~~~~~l~~L~~L~---------------------l~~-------------------- 263 (457)
T 3bz5_A 230 TP----LTQLTYFDCSV-NPLTELDVSTLSKLTTLH---------------------CIQ-------------------- 263 (457)
T ss_dssp TT----CTTCSEEECCS-SCCSCCCCTTCTTCCEEE---------------------CTT--------------------
T ss_pred cc----cCCCCEEEeeC-CcCCCcCHHHCCCCCEEe---------------------ccC--------------------
Confidence 22 77788888887 466633333344444333 322
Q ss_pred hhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCc
Q 038705 482 WLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASL 561 (861)
Q Consensus 482 ~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 561 (861)
.+|+.|++++|...+.+| ++.+++|+.|++++| .....++. ..++|+.|++++|
T Consensus 264 ----------------n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n-~~l~~l~~----~~~~L~~L~l~~~--- 317 (457)
T 3bz5_A 264 ----------------TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHN-TQLYLLDC----QAAGITELDLSQN--- 317 (457)
T ss_dssp ----------------CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTC-TTCCEEEC----TTCCCSCCCCTTC---
T ss_pred ----------------CCCCEEECCCCccCCccc--ccccccCCEEECCCC-cccceecc----CCCcceEechhhc---
Confidence 156667777776666555 455667777777776 33333331 1223333333322
Q ss_pred cccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCccccccccc
Q 038705 562 TSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLL 641 (861)
Q Consensus 562 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 641 (861)
+ +|++|++++|...+ + .+..+++|+.|++++|.+.+
T Consensus 318 ---------------------------------~-~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~~------- 353 (457)
T 3bz5_A 318 ---------------------------------P-KLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQD------- 353 (457)
T ss_dssp ---------------------------------T-TCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCCB-------
T ss_pred ---------------------------------c-cCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCCC-------
Confidence 1 46677777774433 3 26667777777777776554
Q ss_pred CCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccccC
Q 038705 642 KLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGM 688 (861)
Q Consensus 642 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 688 (861)
++.|..|++++|...+. ..+..|+.+++++|.+.+.+|..+
T Consensus 354 -l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 -FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp -CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred -ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 34566666666643333 134456667777777777776644
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=4.5e-27 Score=262.16 Aligned_cols=98 Identities=19% Similarity=0.314 Sum_probs=55.0
Q ss_pred cCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhcccccee
Q 038705 116 LFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHL 195 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L 195 (861)
+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+|. ++++++|++|++++|. +..+|. ++.+++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEE
Confidence 5556666666666666666544 6666666666666666665554 6666666666666653 333332 5666666666
Q ss_pred ecCCCcccccCccccccccccccc
Q 038705 196 KNSNVKALEEMPKGIGNLTHLLTL 219 (861)
Q Consensus 196 ~l~~~~~~~~~p~~i~~l~~L~~L 219 (861)
++++|. +..++ .++.+++|+.|
T Consensus 140 ~l~~n~-l~~~~-~~~~l~~L~~L 161 (466)
T 1o6v_A 140 ELSSNT-ISDIS-ALSGLTSLQQL 161 (466)
T ss_dssp EEEEEE-ECCCG-GGTTCTTCSEE
T ss_pred ECCCCc-cCCCh-hhccCCcccEe
Confidence 666665 22232 24444444444
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=4.2e-27 Score=262.51 Aligned_cols=369 Identities=15% Similarity=0.112 Sum_probs=216.5
Q ss_pred EEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcce
Q 038705 306 ELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLET 384 (861)
Q Consensus 306 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 384 (861)
.++..+.....+|. + .++|++|++++|.+.+..| .++.+++|++|++++|.....+....+. .+++|++
T Consensus 14 ~~~c~~~~l~~lp~-l----~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~-----~l~~L~~ 83 (455)
T 3v47_A 14 NAICINRGLHQVPE-L----PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR-----GLSSLII 83 (455)
T ss_dssp EEECCSSCCSSCCC-C----CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT-----TCTTCCE
T ss_pred ccCcCCCCcccCCC-C----CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc-----ccccCCE
Confidence 34445555666665 2 3678888888888877655 6788888888888888665454433222 2667777
Q ss_pred EeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEccCCC
Q 038705 385 LCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCKG 464 (861)
Q Consensus 385 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~ 464 (861)
|++++ +.+....+..+.. +++|++|++++| .+++.+|.. ..+..++
T Consensus 84 L~Ls~-n~l~~~~~~~~~~----l~~L~~L~L~~n-~l~~~~~~~----------------~~~~~l~------------ 129 (455)
T 3v47_A 84 LKLDY-NQFLQLETGAFNG----LANLEVLTLTQC-NLDGAVLSG----------------NFFKPLT------------ 129 (455)
T ss_dssp EECTT-CTTCEECTTTTTT----CTTCCEEECTTS-CCBTHHHHS----------------STTTTCT------------
T ss_pred EeCCC-CccCccChhhccC----cccCCEEeCCCC-CCCccccCc----------------ccccCcc------------
Confidence 77776 4555555555555 677777777773 444222210 0112222
Q ss_pred CcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhh-hhccccccEEEEeccccccccccccc
Q 038705 465 MAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQA-LLSLGFLREMEIYGNLIKEESIQSSS 543 (861)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~ 543 (861)
+|++|++++|.+.+..|.. +..+++|++|++++| .+..+....
T Consensus 130 ----------------------------------~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~ 173 (455)
T 3v47_A 130 ----------------------------------SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN--KVKSICEED 173 (455)
T ss_dssp ----------------------------------TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC--CBSCCCTTT
T ss_pred ----------------------------------cCCEEECCCCccCccCcccccCCCCcccEEeCCCC--cccccChhh
Confidence 4455555555544443333 445555555555555 122222111
Q ss_pred ccCC--CCccEEEecCCCCccccCCC---------CCCCCCccEEEEecCCCccccccc---CCCcccCcEEeeccccCc
Q 038705 544 TRYT--SLLEYLYIDDCASLTSLLPK---------NELPATLEHLHVKSCGNLAFLSLV---GNLPKALKYLSVDHCLKL 609 (861)
Q Consensus 544 ~~~~--~~L~~L~l~~~~~l~~~~~~---------~~~~~~L~~L~l~~~~~l~~l~~~---~~~~~~L~~L~l~~~~~l 609 (861)
+..+ .+|+.|++++|. +..+.+. ....++|++|+++++..-...+.. ....++|+.|++++|...
T Consensus 174 l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp SGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred hhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence 1111 345555555542 2221110 011234555555544322111100 000136888888877443
Q ss_pred chhh----------hhcc--CCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEecc
Q 038705 610 KSLA----------ERLD--NNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYE 677 (861)
Q Consensus 610 ~~~~----------~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 677 (861)
.... ..+. ..++|+.|++++|.+.+.+|..+..+++|++|++++|......|..+..+++|++|++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 332 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC
Confidence 3211 1111 236788888888888887788888888888888888876666666777788888888888
Q ss_pred ccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCcc
Q 038705 678 CEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMV 755 (861)
Q Consensus 678 ~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 755 (861)
|.+.+..|..+..+++|++|++++|. +..++.. ..+++|++|++++|.+.+..+.. +..+++|+.|++++|+...
T Consensus 333 N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 333 NFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp SCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCC
T ss_pred CccCCcChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCccccCCHhH--hccCCcccEEEccCCCccc
Confidence 88766667777888888888888884 4544333 44678888888888777644433 6778888888888887665
Q ss_pred ccC
Q 038705 756 SFP 758 (861)
Q Consensus 756 ~~~ 758 (861)
..|
T Consensus 410 ~~~ 412 (455)
T 3v47_A 410 SCP 412 (455)
T ss_dssp CTT
T ss_pred CCC
Confidence 554
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2e-25 Score=248.87 Aligned_cols=342 Identities=16% Similarity=0.147 Sum_probs=217.7
Q ss_pred CCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeeeccccceeEECccccCCcCcCCCCC
Q 038705 302 RNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPS 381 (861)
Q Consensus 302 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 381 (861)
++++.|++.++....+|.. ..+++|++|++++|.+.+..+ ++.+++|++|++++|..... .. + ..+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~---~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~------~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGV---EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI-TP-L------ANLTN 113 (466)
T ss_dssp HTCCEEECCSSCCCCCTTG---GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-G------TTCTT
T ss_pred ccccEEecCCCCCccCcch---hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccC-hh-h------cCCCC
Confidence 5777888877777777652 347788888888887665444 77788888888877743322 11 2 23666
Q ss_pred cceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEcc
Q 038705 382 LETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGG 461 (861)
Q Consensus 382 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~ 461 (861)
|++|++++ +.+.+..+ +.. +++|++|++++| .+. .++ .+..+++|+.|.+.+
T Consensus 114 L~~L~L~~-n~l~~~~~--~~~----l~~L~~L~l~~n-~l~-~~~-------------------~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 114 LTGLTLFN-NQITDIDP--LKN----LTNLNRLELSSN-TIS-DIS-------------------ALSGLTSLQQLSFGN 165 (466)
T ss_dssp CCEEECCS-SCCCCCGG--GTT----CTTCSEEEEEEE-EEC-CCG-------------------GGTTCTTCSEEEEEE
T ss_pred CCEEECCC-CCCCCChH--HcC----CCCCCEEECCCC-ccC-CCh-------------------hhccCCcccEeecCC
Confidence 66666666 34444432 333 666777777663 443 222 123344445554432
Q ss_pred CCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEeccccccccccc
Q 038705 462 CKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQS 541 (861)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 541 (861)
+. ... ..+..+ ++|++|++++|.+... ..+..+++|++|++++|. +..++.
T Consensus 166 ~~-~~~-----------------------~~~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~--l~~~~~ 216 (466)
T 1o6v_A 166 QV-TDL-----------------------KPLANL-TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ--ISDITP 216 (466)
T ss_dssp SC-CCC-----------------------GGGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC--CCCCGG
T ss_pred cc-cCc-----------------------hhhccC-CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCc--cccccc
Confidence 11 000 001111 3677777777776543 246677777777777772 223322
Q ss_pred ccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCC
Q 038705 542 SSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSS 621 (861)
Q Consensus 542 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 621 (861)
+..+++|+.|++++|. ++. ++....++ +|++|++++|...+.. . +..+++
T Consensus 217 --~~~l~~L~~L~l~~n~-l~~------------------------~~~l~~l~-~L~~L~l~~n~l~~~~-~-~~~l~~ 266 (466)
T 1o6v_A 217 --LGILTNLDELSLNGNQ-LKD------------------------IGTLASLT-NLTDLDLANNQISNLA-P-LSGLTK 266 (466)
T ss_dssp --GGGCTTCCEEECCSSC-CCC------------------------CGGGGGCT-TCSEEECCSSCCCCCG-G-GTTCTT
T ss_pred --ccccCCCCEEECCCCC-ccc------------------------chhhhcCC-CCCEEECCCCccccch-h-hhcCCC
Confidence 2556677777777763 221 11122333 6888888888544333 2 777888
Q ss_pred ccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecC
Q 038705 622 LEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGD 701 (861)
Q Consensus 622 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 701 (861)
|+.|++++|.+.+..+ +..+++|++|++++|.... ++. +..+++|+.|++++|.+.+..| +..+++|++|++++
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 8888888887766444 7778888888888885444 333 5667888888888888666554 67888899999988
Q ss_pred CCCCcccCCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCC
Q 038705 702 LPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 702 n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 753 (861)
| .+..++....+++|++|++++|++.+..+ +..+++|+.|++++|+.
T Consensus 341 n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 341 N-KVSDVSSLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQAW 387 (466)
T ss_dssp S-CCCCCGGGTTCTTCCEEECCSSCCCBCGG----GTTCTTCCEEECCCEEE
T ss_pred C-ccCCchhhccCCCCCEEeCCCCccCccch----hhcCCCCCEEeccCCcc
Confidence 8 46666555667889999999888876654 77888999999988853
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=8e-25 Score=245.33 Aligned_cols=316 Identities=18% Similarity=0.094 Sum_probs=190.5
Q ss_pred cEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcc
Q 038705 305 EELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLE 383 (861)
Q Consensus 305 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 383 (861)
+.++.++.....+|..+ .++++.|++++|.+.+..+ .+..+++|++|++++|......+..+.+ +++|+
T Consensus 14 ~~v~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------l~~L~ 83 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN------LFNLR 83 (477)
T ss_dssp TEEECCSCCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------CTTCC
T ss_pred CEEEeCCCCcCcCCCCC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC------CccCC
Confidence 34555666667777654 4588999999988877655 6888899999999888544433433333 77788
Q ss_pred eEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEccCC
Q 038705 384 TLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGGCK 463 (861)
Q Consensus 384 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~ 463 (861)
+|++++ +.+..+....+.. +++|++|++++ +.+++..|.. +..+++|+.|++++|.
T Consensus 84 ~L~L~~-n~l~~~~~~~~~~----l~~L~~L~Ls~-n~i~~~~~~~------------------~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 84 TLGLRS-NRLKLIPLGVFTG----LSNLTKLDISE-NKIVILLDYM------------------FQDLYNLKSLEVGDND 139 (477)
T ss_dssp EEECCS-SCCCSCCTTSSTT----CTTCCEEECTT-SCCCEECTTT------------------TTTCTTCCEEEECCTT
T ss_pred EEECCC-CcCCccCcccccC----CCCCCEEECCC-CccccCChhH------------------ccccccCCEEECCCCc
Confidence 888877 4566655555555 77888888877 4555333322 2233444444444443
Q ss_pred CCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEeccccccccccccc
Q 038705 464 GMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSS 543 (861)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 543 (861)
..... ...+..+ ++|++|++++|.+.+..+..+..+++|+.|++++| .+..++...
T Consensus 140 l~~~~---------------------~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--~i~~~~~~~ 195 (477)
T 2id5_A 140 LVYIS---------------------HRAFSGL-NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL--NINAIRDYS 195 (477)
T ss_dssp CCEEC---------------------TTSSTTC-TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC--CCCEECTTC
T ss_pred cceeC---------------------hhhccCC-CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC--cCcEeChhh
Confidence 21100 0111122 36666666666666555555666666666666666 333444444
Q ss_pred ccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhh-hhccCCCCc
Q 038705 544 TRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLA-ERLDNNSSL 622 (861)
Q Consensus 544 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L 622 (861)
+..+++|++|++++|..+.. ++.......+|++|++++|... .+| ..+..+++|
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~------------------------~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L 250 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDT------------------------MTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYL 250 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCE------------------------ECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTC
T ss_pred cccCcccceeeCCCCccccc------------------------cCcccccCccccEEECcCCccc-ccCHHHhcCcccc
Confidence 45555566666555543322 2211111125777777777433 333 456677777
Q ss_pred cEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCC
Q 038705 623 EAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDL 702 (861)
Q Consensus 623 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 702 (861)
+.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 77777777766666666777777777777777666655666666777777777777655544555667777777777777
Q ss_pred C
Q 038705 703 P 703 (861)
Q Consensus 703 ~ 703 (861)
+
T Consensus 331 ~ 331 (477)
T 2id5_A 331 P 331 (477)
T ss_dssp C
T ss_pred C
Confidence 5
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=5.6e-25 Score=235.62 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=62.4
Q ss_pred cCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhcccccee
Q 038705 116 LFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHL 195 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L 195 (861)
+..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. ++.+++|++|++++|. +..+| .++.+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEE
Confidence 4566778888888888877754 7778888888888888887766 8888888888888874 44444 47778888888
Q ss_pred ecCCCc
Q 038705 196 KNSNVK 201 (861)
Q Consensus 196 ~l~~~~ 201 (861)
++++|.
T Consensus 116 ~l~~n~ 121 (347)
T 4fmz_A 116 YLNEDN 121 (347)
T ss_dssp ECTTSC
T ss_pred ECcCCc
Confidence 888776
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.1e-25 Score=239.17 Aligned_cols=213 Identities=16% Similarity=0.073 Sum_probs=134.2
Q ss_pred ccCCccEEeecccccCcCCcccchhhhhhc-cCCCCcccEEEccCccccccC-cccCCCCccceeeccCCcccccch-hh
Q 038705 86 DAKRLRTFLPLVLSNTWSGKAYLAHSVLYM-LFKLQRLRVLSLRGYSIFHVP-SSIGDLKHLQYLDLSETKIKTLPE-SV 162 (861)
Q Consensus 86 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~i~~lp~-~i 162 (861)
.++++|+|.+.++. ...+|+. |.++++|++|++++|.++.++ .+|..+++|++|++++|.++.+|. .|
T Consensus 43 ~l~~l~~l~l~~~~---------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNST---------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEESCE---------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCceEEEecCCc---------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 56788888775533 3456666 788888888888888888774 478888888888888888887754 47
Q ss_pred hccccccEEecCCccchhhchhh-hhhccccceeecCCCcccccCccccccccccccccceEecccCCCCcccccccccc
Q 038705 163 NKLWNLHTLLLENCHRLKKLCAN-MGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHL 241 (861)
Q Consensus 163 ~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L 241 (861)
+++++|++|++++|. +..+|.. ++.+++|++|++++|.+.+..|..++++++|++|++..+...
T Consensus 114 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------- 178 (390)
T 3o6n_A 114 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-------------- 178 (390)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS--------------
T ss_pred cCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC--------------
Confidence 888888888888875 4455554 578888888888888855444555778888887755433211
Q ss_pred cceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCC
Q 038705 242 QGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWM 321 (861)
Q Consensus 242 ~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 321 (861)
.+ .+..+++|+.+++++|.. ..+...++|+.|+++++....+|...
T Consensus 179 ----------~~---------~~~~l~~L~~L~l~~n~l---------------~~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 179 ----------HV---------DLSLIPSLFHANVSYNLL---------------STLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp ----------BC---------CGGGCTTCSEEECCSSCC---------------SEEECCSSCSEEECCSSCCCEEECCC
T ss_pred ----------cc---------ccccccccceeecccccc---------------cccCCCCcceEEECCCCeeeeccccc
Confidence 00 022234444444444322 11222345666666666655554432
Q ss_pred CCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecccc
Q 038705 322 GDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFIIEMT 361 (861)
Q Consensus 322 ~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 361 (861)
+++|+.|++++|.+.+ .+.++.+++|++|++++|.
T Consensus 225 ----~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 225 ----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp ----CSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC
T ss_pred ----cccccEEECCCCCCcc-cHHHcCCCCccEEECCCCc
Confidence 3566666666665543 2344455555555555543
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=5.1e-24 Score=238.75 Aligned_cols=300 Identities=16% Similarity=0.138 Sum_probs=192.1
Q ss_pred CCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcc
Q 038705 496 FPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLE 575 (861)
Q Consensus 496 ~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 575 (861)
+|++++.|++++|.+.+..+..|..+++|++|++++| .+..+....+..+++|++|++++|. ++.+.+..
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------- 99 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN--IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGV------- 99 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTS-------
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC--ccCEeChhhhhCCccCCEEECCCCc-CCccCccc-------
Confidence 4568999999999999888889999999999999999 5556656666888999999999983 44321111
Q ss_pred EEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCC
Q 038705 576 HLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCP 655 (861)
Q Consensus 576 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 655 (861)
.+.++ +|++|++++|...+..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 100 ---------------~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 100 ---------------FTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp ---------------STTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred ---------------ccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 11222 56666666665555555566666777777777766666666666667777777777764
Q ss_pred CceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCC-CCCccEEEecCccCccccccc
Q 038705 656 NLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGF-PTNLHSLEIRDMKMWKSLIEW 734 (861)
Q Consensus 656 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~ 734 (861)
.....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+.+..++...+ ..+|++|++++|.+.......
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH
Confidence 3332222344566677777776666555555666667777777777666666655422 346777777776655432222
Q ss_pred ccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCccccc-CCCCCCCCCEEeccCCCCcccCCCC--
Q 038705 735 EPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSS-VGESLPSLECLILDDCPKLRYFPDK-- 811 (861)
Q Consensus 735 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~-- 811 (861)
+..+++|+.|++++|+ +..++.... ..+++|+.|++.++. ++.+.. ....+++|+.|++++| .++.++..
T Consensus 244 --~~~l~~L~~L~Ls~n~-l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 316 (477)
T 2id5_A 244 --VRHLVYLRFLNLSYNP-ISTIEGSML--HELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVF 316 (477)
T ss_dssp --HTTCTTCCEEECCSSC-CCEECTTSC--TTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGB
T ss_pred --hcCccccCeeECCCCc-CCccChhhc--cccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCC-cCceeCHhHc
Confidence 5666777777777764 333333211 123566666666542 333322 2267778888888877 56666653
Q ss_pred CCccccceeeccCCcch
Q 038705 812 GLPPSLLQLHISNCPLI 828 (861)
Q Consensus 812 ~~~~sL~~L~l~~c~~l 828 (861)
..+++|++|++++|+..
T Consensus 317 ~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 317 HSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCGGGCCEEECCSSCEE
T ss_pred CCCcccCEEEccCCCcc
Confidence 23577888888888754
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=4.9e-24 Score=232.04 Aligned_cols=212 Identities=16% Similarity=0.142 Sum_probs=112.8
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+|++|++++|.+.+..+..+..+++|++|++++|. +..++ ...+++|+.|++++|. ++. ...++.|++|+
T Consensus 142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~---~~~l~~L~~L~l~~n~-l~~----~~~~~~L~~L~ 211 (390)
T 3o6n_A 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVD---LSLIPSLFHANVSYNL-LST----LAIPIAVEELD 211 (390)
T ss_dssp TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCC---GGGCTTCSEEECCSSC-CSE----EECCSSCSEEE
T ss_pred CCcEEECCCCccCccChhhccCCCCCCEEECCCCc--CCccc---cccccccceeeccccc-ccc----cCCCCcceEEE
Confidence 55555555555554444455555555666655552 22221 1344555555555552 111 11122344444
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCce
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLI 658 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 658 (861)
++++. +..++ . ..+++|++|++++|...+ . ..+..+++|++|++++|.+.+..|..+..+++|++|++++|. +.
T Consensus 212 l~~n~-l~~~~-~-~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~ 285 (390)
T 3o6n_A 212 ASHNS-INVVR-G-PVNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LV 285 (390)
T ss_dssp CCSSC-CCEEE-C-CCCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CC
T ss_pred CCCCe-eeecc-c-cccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-Cc
Confidence 43321 22222 1 122357777777774433 2 355666777777777777666666667777777777777763 34
Q ss_pred ecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcc
Q 038705 659 SFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWK 729 (861)
Q Consensus 659 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~ 729 (861)
.+|.....+++|++|++++|++ ..+|..+..+++|++|++++|+ +..++ ...+++|++|++++|++..
T Consensus 286 ~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~N~-i~~~~-~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 286 ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCEEH
T ss_pred ccCcccCCCCCCCEEECCCCcc-eecCccccccCcCCEEECCCCc-cceeC-chhhccCCEEEcCCCCccc
Confidence 4555555566777777776653 3455555566666666666663 44443 2334555555555555443
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=9.1e-24 Score=226.21 Aligned_cols=279 Identities=20% Similarity=0.168 Sum_probs=136.4
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+|++|++++|.+.+..+ +..+++|++|++++| .+..++. +..+++|++|++++|. ++. ++....+++|+.|+
T Consensus 67 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n--~i~~~~~--~~~l~~L~~L~l~~n~-i~~-~~~~~~l~~L~~L~ 138 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN--KITDISA--LQNLTNLRELYLNEDN-ISD-ISPLANLTKMYSLN 138 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS--CCCCCGG--GTTCTTCSEEECTTSC-CCC-CGGGTTCTTCCEEE
T ss_pred CccEEEccCCccccchh--hhcCCcCCEEEccCC--cccCchH--HcCCCcCCEEECcCCc-ccC-chhhccCCceeEEE
Confidence 66667776666554322 666677777777776 3333332 3556667777776663 332 11122234444444
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCce
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLI 658 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 658 (861)
+++|..+..++....++ +|++|++++|... .++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|....
T Consensus 139 l~~n~~~~~~~~~~~l~-~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 139 LGANHNLSDLSPLSNMT-GLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp CTTCTTCCCCGGGTTCT-TCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCcccccchhhCC-CCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence 44444333333333333 4555555555322 2221 4445555555555554433222 4445555555555553222
Q ss_pred ecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccCC
Q 038705 659 SFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLN 738 (861)
Q Consensus 659 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 738 (861)
..+ +..+++|++|++++|.+... +. +..+++|++|++++| .+..++....+++|++|++++|.+... +. +.
T Consensus 214 ~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~---~~ 284 (347)
T 4fmz_A 214 ITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQISDI-SV---LN 284 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCC-GG---GG
T ss_pred Cch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCccCCC-hh---hc
Confidence 211 33444555555555543322 22 445555555555555 333333333344555555555544332 11 44
Q ss_pred cCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCCCCCCCCCEEeccCCCCcccCCCCCCccccc
Q 038705 739 RFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVGESLPSLECLILDDCPKLRYFPDKGLPPSLL 818 (861)
Q Consensus 739 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~sL~ 818 (861)
.+++|+.|++++|+.... .+.....+++|+.|++++|+ ++.++....+++|+
T Consensus 285 ~l~~L~~L~L~~n~l~~~---------------------------~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~ 336 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNE---------------------------DMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMD 336 (347)
T ss_dssp GCTTCSEEECCSSCCCGG---------------------------GHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCS
T ss_pred CCCCCCEEECcCCcCCCc---------------------------ChhHhhccccCCEEEccCCc-cccccChhhhhccc
Confidence 445555555555432211 11111567788888888885 55554445567888
Q ss_pred eeeccCCcc
Q 038705 819 QLHISNCPL 827 (861)
Q Consensus 819 ~L~l~~c~~ 827 (861)
+|++++|+.
T Consensus 337 ~L~l~~N~i 345 (347)
T 4fmz_A 337 SADFANQVI 345 (347)
T ss_dssp EESSSCC--
T ss_pred eeehhhhcc
Confidence 888888874
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.9e-24 Score=248.29 Aligned_cols=213 Identities=15% Similarity=0.061 Sum_probs=142.2
Q ss_pred ccCCccEEeecccccCcCCcccchhhhhhc-cCCCCcccEEEccCccccccC-cccCCCCccceeeccCCcccccchh-h
Q 038705 86 DAKRLRTFLPLVLSNTWSGKAYLAHSVLYM-LFKLQRLRVLSLRGYSIFHVP-SSIGDLKHLQYLDLSETKIKTLPES-V 162 (861)
Q Consensus 86 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~i~~lp~~-i 162 (861)
.++++++|.+.++. ...+|+. |.++++|++|+|++|.++.+| .+|+.+++|++|+|++|.++.+|.. |
T Consensus 49 ~l~~l~~l~l~~~~---------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKNST---------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESSCE---------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCceEEEeeCCC---------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 56788888775533 3567777 888999999999999988774 5889999999999999999877654 7
Q ss_pred hccccccEEecCCccchhhchhh-hhhccccceeecCCCcccccCccccccccccccccceEecccCCCCcccccccccc
Q 038705 163 NKLWNLHTLLLENCHRLKKLCAN-MGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHL 241 (861)
Q Consensus 163 ~~L~~L~~L~l~~n~~~~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L 241 (861)
+++++|++|++++|.+. .+|.. |+.+++|++|++++|.+.+..|..++.+++|++|++..+...
T Consensus 120 ~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------- 184 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-------------- 184 (597)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS--------------
T ss_pred cCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC--------------
Confidence 89999999999998544 55544 688999999999999866656667888888888865433211
Q ss_pred cceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCC
Q 038705 242 QGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWM 321 (861)
Q Consensus 242 ~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 321 (861)
.+ .+..+++|+.|++++|.. ..+..+++|+.|+++++....+|...
T Consensus 185 ----------~~---------~~~~l~~L~~L~l~~n~l---------------~~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 185 ----------HV---------DLSLIPSLFHANVSYNLL---------------STLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp ----------BC---------CGGGCTTCSEEECCSSCC---------------SEEECCTTCSEEECCSSCCCEEECSC
T ss_pred ----------Cc---------ChhhhhhhhhhhcccCcc---------------ccccCCchhheeeccCCccccccccc
Confidence 00 022334455555544332 11223456666666666665555433
Q ss_pred CCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecccc
Q 038705 322 GDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFIIEMT 361 (861)
Q Consensus 322 ~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~~~~ 361 (861)
.++|+.|++++|.+.+ .+.++.+++|+.|++++|.
T Consensus 231 ----~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 231 ----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp ----CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC
T ss_pred ----CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCc
Confidence 3466666666666544 2345555555555555543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1e-23 Score=242.34 Aligned_cols=212 Identities=17% Similarity=0.170 Sum_probs=134.3
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+|++|++++|.+.+..|..+..+++|++|++++|. +..++ ...+++|+.|++++|. +.. ...++.|+.|+
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~---~~~l~~L~~L~l~~n~-l~~----l~~~~~L~~L~ 217 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVD---LSLIPSLFHANVSYNL-LST----LAIPIAVEELD 217 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBCC---GGGCTTCSEEECCSSC-CSE----EECCTTCSEEE
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCcC---hhhhhhhhhhhcccCc-ccc----ccCCchhheee
Confidence 56666666666655555556666666666666662 22222 1345566666666652 221 12234455555
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCce
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLI 658 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 658 (861)
++++. +..++ +..+++|+.|++++|...+ +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|. +.
T Consensus 218 ls~n~-l~~~~--~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~ 291 (597)
T 3oja_B 218 ASHNS-INVVR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LV 291 (597)
T ss_dssp CCSSC-CCEEE--CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CC
T ss_pred ccCCc-ccccc--cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CC
Confidence 55432 23232 2233468888888885443 3567778888888888888887778888888888888888884 44
Q ss_pred ecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcc
Q 038705 659 SFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWK 729 (861)
Q Consensus 659 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~ 729 (861)
.+|.....+++|+.|++++|.+. .+|..+..+++|+.|++++|+ +..++ ...+++|+.|++++|++..
T Consensus 292 ~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 292 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSCEEH
T ss_pred CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC-CCCcC-hhhcCCCCEEEeeCCCCCC
Confidence 46666666788888888887754 566667777888888888874 44444 3345677777777776654
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=1.5e-22 Score=214.70 Aligned_cols=297 Identities=17% Similarity=0.157 Sum_probs=166.0
Q ss_pred CccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeeccccceeEECccccCCcCcCCCCC
Q 038705 303 NLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPS 381 (861)
Q Consensus 303 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 381 (861)
+++.++++++....+|..+ .++++.|++++|.+.+..+ .++.+++|++|++++|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------------- 87 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-------------------- 87 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC--------------------
T ss_pred CCeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc--------------------
Confidence 5666666666666666544 3467777777776655444 45666666666665542
Q ss_pred cceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEcc
Q 038705 382 LETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIGG 461 (861)
Q Consensus 382 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~ 461 (861)
+.++.+..+.. +++|++|++++ +.++ .+|..+.
T Consensus 88 -----------l~~~~~~~~~~----l~~L~~L~Ls~-n~l~-~l~~~~~------------------------------ 120 (330)
T 1xku_A 88 -----------ISKISPGAFAP----LVKLERLYLSK-NQLK-ELPEKMP------------------------------ 120 (330)
T ss_dssp -----------CCCBCTTTTTT----CTTCCEEECCS-SCCS-BCCSSCC------------------------------
T ss_pred -----------CCeeCHHHhcC----CCCCCEEECCC-CcCC-ccChhhc------------------------------
Confidence 33333334444 77888888887 4565 4443211
Q ss_pred CCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEeccccccccccc
Q 038705 462 CKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQS 541 (861)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 541 (861)
++|++|++++|.+.+..+..+..+++|+.|++++|......+..
T Consensus 121 ------------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 121 ------------------------------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp ------------------------------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred ------------------------------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 27888888888888777778889999999999998443333444
Q ss_pred ccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCC
Q 038705 542 SSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSS 621 (861)
Q Consensus 542 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 621 (861)
..+..+++|++|++++|. ++. ++ ..++++|++|++++|...+..|..+..+++
T Consensus 165 ~~~~~l~~L~~L~l~~n~-l~~------------------------l~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 217 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTN-ITT------------------------IP--QGLPPSLTELHLDGNKITKVDAASLKGLNN 217 (330)
T ss_dssp TGGGGCTTCCEEECCSSC-CCS------------------------CC--SSCCTTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred hhccCCCCcCEEECCCCc-ccc------------------------CC--ccccccCCEEECCCCcCCccCHHHhcCCCC
Confidence 444566777777777763 211 11 011125666666666444444455555556
Q ss_pred ccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecC
Q 038705 622 LEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGD 701 (861)
Q Consensus 622 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 701 (861)
|++|++++|.+.+..+..+..+++|++|++++|. +..+|..+..+++|++|++++|++.+..+..+....
T Consensus 218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~--------- 287 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG--------- 287 (330)
T ss_dssp CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS---------
T ss_pred CCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhhcCCcc---------
Confidence 6666666555555444455555555555555552 334444444444555555555443322222221110
Q ss_pred CCCCcccCCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecC
Q 038705 702 LPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 702 n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 751 (861)
.....++++.|++++|++.........+..+++|+.+++++|
T Consensus 288 --------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 288 --------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp --------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred --------cccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 000124566777777776542221122777888888888877
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2.1e-22 Score=213.81 Aligned_cols=208 Identities=17% Similarity=0.122 Sum_probs=108.4
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+|++|++++|.+.+..+..+..+++|+.|++++|......+....+..+ +|++|++++|. ++.
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~--------------- 186 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTG--------------- 186 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSS---------------
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCc---------------
Confidence 7788888888877666667888888888888888433222333333333 56666666652 111
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCce
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLI 658 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 658 (861)
+| ..++++|++|++++|...+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|. +.
T Consensus 187 ---------l~--~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~ 254 (332)
T 2ft3_A 187 ---------IP--KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LS 254 (332)
T ss_dssp ---------CC--SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CC
T ss_pred ---------cC--ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-Ce
Confidence 11 0111245666666654433334455555555555555555555444455555555555555552 33
Q ss_pred ecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccCC
Q 038705 659 SFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLN 738 (861)
Q Consensus 659 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 738 (861)
.+|..+..+++|+.|++++|++.+..+..+.... .....++|+.|++++|++.........+.
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-----------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG-----------------FGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS-----------------CCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccc-----------------cccccccccceEeecCcccccccCccccc
Confidence 4444444444555555555443322222221110 00013457777777777653211122378
Q ss_pred cCCCcCeEEeecCC
Q 038705 739 RFTSLRRLSIHGCQ 752 (861)
Q Consensus 739 ~l~~L~~L~l~~~~ 752 (861)
.+++|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 88889999988874
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=2.8e-22 Score=212.64 Aligned_cols=195 Identities=23% Similarity=0.246 Sum_probs=105.5
Q ss_pred CcccEEEccCccccccCcccCCCCccceeeccCCcccccch-hhhccccccEEecCCccchhhchhhhhhccccceeecC
Q 038705 120 QRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPE-SVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNS 198 (861)
Q Consensus 120 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~ 198 (861)
.++++++++++.++.+|..+. ++|++|++++|.++.+|. .|+++++|++|++++|.+.+..|..++.+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 356666666666666665543 456666666666665554 46666666666666665444446666666666666666
Q ss_pred CCcccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeec
Q 038705 199 NVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWT 278 (861)
Q Consensus 199 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (861)
+|. +..+|..+. ++|++|++..+. +..+ ....+..+.+|+.|++++|
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l~~n~------------------------l~~~------~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRVHENE------------------------ITKV------RKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEECCSSC------------------------CCBB------CHHHHTTCTTCCEEECCSS
T ss_pred CCc-CCccChhhc--ccccEEECCCCc------------------------cccc------CHhHhcCCccccEEECCCC
Confidence 666 344554433 344444322111 0000 0111333444444444443
Q ss_pred cCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeee
Q 038705 279 SSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFI 357 (861)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l 357 (861)
...... .....+..+++|+.|+++++....+|..+ +++|++|++++|.+.+..+ .++.+++|+.|++
T Consensus 156 ~l~~~~--------~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 156 PLKSSG--------IENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp CCCGGG--------BCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred cCCccC--------cChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 321100 01122445567777777777766666554 3567777777776655544 5666666666666
Q ss_pred cccc
Q 038705 358 IEMT 361 (861)
Q Consensus 358 ~~~~ 361 (861)
++|.
T Consensus 224 s~n~ 227 (330)
T 1xku_A 224 SFNS 227 (330)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6664
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=4.6e-23 Score=217.40 Aligned_cols=233 Identities=24% Similarity=0.303 Sum_probs=177.9
Q ss_pred CCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccceeec
Q 038705 118 KLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKN 197 (861)
Q Consensus 118 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l 197 (861)
...++++|+|++|.++.+|..+..+++|++|+|++|.++.+|..|+++++|++|++++|.+. .+|..++.+++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45789999999999999999999999999999999999999999999999999999998654 88999999999999999
Q ss_pred CCCcccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheee
Q 038705 198 SNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEW 277 (861)
Q Consensus 198 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 277 (861)
++|...+.+|..++...-.
T Consensus 158 ~~n~~~~~~p~~~~~~~~~------------------------------------------------------------- 176 (328)
T 4fcg_A 158 RACPELTELPEPLASTDAS------------------------------------------------------------- 176 (328)
T ss_dssp EEETTCCCCCSCSEEEC-C-------------------------------------------------------------
T ss_pred CCCCCccccChhHhhccch-------------------------------------------------------------
Confidence 9988788888655431000
Q ss_pred ccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeee
Q 038705 278 TSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFI 357 (861)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l 357 (861)
..+..+++|+.|++++|....+|.++. .+++|+.|++++|.+.+..+.++.+++|++|++
T Consensus 177 ------------------~~~~~l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 177 ------------------GEHQGLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp ------------------CCEEESTTCCEEEEEEECCCCCCGGGG--GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred ------------------hhhccCCCCCEEECcCCCcCcchHhhc--CCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 002234678888888888778887764 478888888888887764446667777777777
Q ss_pred ccccceeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEE
Q 038705 358 IEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLV 437 (861)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~ 437 (861)
++|+....+ +..+.. +++|+.|++++|+.+ +.+|..+.++
T Consensus 237 s~n~~~~~~-------------------------------p~~~~~----l~~L~~L~L~~n~~~-~~~p~~~~~l---- 276 (328)
T 4fcg_A 237 RGCTALRNY-------------------------------PPIFGG----RAPLKRLILKDCSNL-LTLPLDIHRL---- 276 (328)
T ss_dssp TTCTTCCBC-------------------------------CCCTTC----CCCCCEEECTTCTTC-CBCCTTGGGC----
T ss_pred cCCcchhhh-------------------------------HHHhcC----CCCCCEEECCCCCch-hhcchhhhcC----
Confidence 766543322 222333 777888888885443 3666433222
Q ss_pred EeccCCCcccCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhh
Q 038705 438 VRGCEQLTVLVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQA 517 (861)
Q Consensus 438 l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~ 517 (861)
++|++|++++|.+.+.+|..
T Consensus 277 ------------------------------------------------------------~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 277 ------------------------------------------------------------TQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp ------------------------------------------------------------TTCCEEECTTCTTCCCCCGG
T ss_pred ------------------------------------------------------------CCCCEEeCCCCCchhhccHH
Confidence 27888888888888888888
Q ss_pred hhccccccEEEEecc
Q 038705 518 LLSLGFLREMEIYGN 532 (861)
Q Consensus 518 ~~~l~~L~~L~l~~~ 532 (861)
++.+++|+.+++..+
T Consensus 297 l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 297 IAQLPANCIILVPPH 311 (328)
T ss_dssp GGGSCTTCEEECCGG
T ss_pred HhhccCceEEeCCHH
Confidence 888888888888876
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=4.8e-23 Score=216.04 Aligned_cols=232 Identities=17% Similarity=0.166 Sum_probs=185.9
Q ss_pred cccEEEeecccccc--cchhhhhccccccEEEEec-ccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcc
Q 038705 499 SLQYLELSQCRYLV--KLPQALLSLGFLREMEIYG-NLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLE 575 (861)
Q Consensus 499 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 575 (861)
+++.|++++|.+.+ .+|..+..+++|++|++++ | .....+|.. +..+++|++|++++|. ++...+..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n-~l~~~~p~~-l~~l~~L~~L~Ls~n~-l~~~~p~~------- 120 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPIPPA-IAKLTQLHYLYITHTN-VSGAIPDF------- 120 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEET-TEESCCCGG-GGGCTTCSEEEEEEEC-CEEECCGG-------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCC-cccccCChh-HhcCCCCCEEECcCCe-eCCcCCHH-------
Confidence 89999999999998 8899999999999999996 6 233344433 4678889999998883 33211110
Q ss_pred EEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCC-CCcEEeeccC
Q 038705 576 HLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLN-HLQEIFISHC 654 (861)
Q Consensus 576 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~L~~~ 654 (861)
.+.++ +|++|++++|...+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|
T Consensus 121 ---------------~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 121 ---------------LSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp ---------------GGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred ---------------HhCCC-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 12233 699999999977678888889999999999999998888899898888 8999999999
Q ss_pred CCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCccccccc
Q 038705 655 PNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEW 734 (861)
Q Consensus 655 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 734 (861)
...+.+|..+..++ |++|++++|.+.+..|..+..+++|++|++++|.....++....+++|++|++++|.+.+.++..
T Consensus 185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG
T ss_pred eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH
Confidence 77778888777766 99999999998888888899999999999999965545555566789999999999988777765
Q ss_pred ccCCcCCCcCeEEeecCCCccccCC
Q 038705 735 EPLNRFTSLRRLSIHGCQDMVSFPQ 759 (861)
Q Consensus 735 ~~~~~l~~L~~L~l~~~~~~~~~~~ 759 (861)
+..+++|++|++++|+..+.+|.
T Consensus 264 --l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 264 --LTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp --GGGCTTCCEEECCSSEEEEECCC
T ss_pred --HhcCcCCCEEECcCCcccccCCC
Confidence 88899999999999866656654
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=1.3e-21 Score=207.62 Aligned_cols=271 Identities=16% Similarity=0.135 Sum_probs=182.2
Q ss_pred CcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 498 CSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
+++++|++++|.+.+..+..+..+++|++|++++| .+..+....+..+++|++|++++|. ++.
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-------------- 116 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN--KISKIHEKAFSPLRKLQKLYISKNH-LVE-------------- 116 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCCEECGGGSTTCTTCCEEECCSSC-CCS--------------
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC--ccCccCHhHhhCcCCCCEEECCCCc-CCc--------------
Confidence 36777777777777666667778888888888887 4445544445667778888877773 222
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCc--ccccccccCCCCCcEEeeccCC
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENL--IVLPDGLLKLNHLQEIFISHCP 655 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~--~~~~~~~~~l~~L~~L~L~~~~ 655 (861)
++ . .++++|++|++++|...+..+..+..+++|+.|++++|.+. +..|..+..+ +|++|++++|.
T Consensus 117 ----------l~-~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 117 ----------IP-P-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ----------CC-S-SCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ----------cC-c-cccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 11 0 11136888888888554444456788899999999998874 3567777777 89999999984
Q ss_pred CceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccc
Q 038705 656 NLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIE 733 (861)
Q Consensus 656 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~ 733 (861)
+..+|..+. ++|++|++++|.+.+..+..+..+++|++|++++| .+..++.. ..+++|++|++++|.+. .++.
T Consensus 184 -l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 184 -LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp -CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred -CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence 555776554 68999999999877777788899999999999998 56666543 44789999999999877 4554
Q ss_pred cccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCCCCCCCCCEEeccCCCCcc-cCCCC-
Q 038705 734 WEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVGESLPSLECLILDDCPKLR-YFPDK- 811 (861)
Q Consensus 734 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~~~~~- 811 (861)
. +..+++|+.|++++|+ ++.++........ .....++|+.|++.+++... .++..
T Consensus 259 ~--l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~--------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 259 G--LPDLKLLQVVYLHTNN-ITKVGVNDFCPVG--------------------FGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp T--GGGCTTCCEEECCSSC-CCBCCTTSSSCSS--------------------CCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred h--hhcCccCCEEECCCCC-CCccChhHccccc--------------------cccccccccceEeecCcccccccCccc
Confidence 4 7889999999999984 4455443211100 00224566777777765331 22221
Q ss_pred -CCccccceeeccCCc
Q 038705 812 -GLPPSLLQLHISNCP 826 (861)
Q Consensus 812 -~~~~sL~~L~l~~c~ 826 (861)
.-+++|+.+++++|.
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 225667777777664
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.1e-22 Score=213.22 Aligned_cols=229 Identities=16% Similarity=0.087 Sum_probs=158.9
Q ss_pred cccEEEeec-ccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 499 SLQYLELSQ-CRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 499 ~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
+|++|++++ |.+.+.+|..+..+++|++|++++|.+. ..+|. .+..+++|++|++++|. ++...+.
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~-~~~~l~~L~~L~Ls~N~-l~~~~p~---------- 143 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPD-FLSQIKTLVTLDFSYNA-LSGTLPP---------- 143 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCG-GGGGCTTCCEEECCSSE-EESCCCG----------
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-CcCCH-HHhCCCCCCEEeCCCCc-cCCcCCh----------
Confidence 666777763 6666666767777777777777777221 12332 23556677777777662 2211110
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCC-CccEEeeccccCcccccccccCCCCCcEEeeccCCC
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNS-SLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPN 656 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 656 (861)
..+.++ +|++|++++|...+.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|..
T Consensus 144 ------------~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 144 ------------SISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ------------GGGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred ------------HHhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 012233 678888888866667777787777 888888888888878888888776 88888888866
Q ss_pred ceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC-CCCCCccEEEecCccCcccccccc
Q 038705 657 LISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED-GFPTNLHSLEIRDMKMWKSLIEWE 735 (861)
Q Consensus 657 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~ 735 (861)
....|..+..+++|+.|++++|.+.+.+|. +..+++|++|++++|.....+|.. ..+++|++|++++|++.+.+|.
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-- 286 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-- 286 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC--
Confidence 666677777788888888888886655554 777888888888888544355543 4477888888888888877776
Q ss_pred cCCcCCCcCeEEeecCCCccccC
Q 038705 736 PLNRFTSLRRLSIHGCQDMVSFP 758 (861)
Q Consensus 736 ~~~~l~~L~~L~l~~~~~~~~~~ 758 (861)
...+++|+.+++++|+.+...|
T Consensus 287 -~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 287 -GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp -STTGGGSCGGGTCSSSEEESTT
T ss_pred -CccccccChHHhcCCCCccCCC
Confidence 5778899999999987665443
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=4.1e-21 Score=202.51 Aligned_cols=221 Identities=20% Similarity=0.277 Sum_probs=158.7
Q ss_pred CcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 498 CSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
+.+++|++++|.+. .+|..+..+++|++|++++|. +..+|.. +..+++|++|++++|. ++. ++..
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~--l~~lp~~-~~~l~~L~~L~Ls~n~-l~~-lp~~--------- 145 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG--LMELPDT-MQQFAGLETLTLARNP-LRA-LPAS--------- 145 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC--CCCCCSC-GGGGTTCSEEEEESCC-CCC-CCGG---------
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCC--ccchhHH-HhccCCCCEEECCCCc-ccc-CcHH---------
Confidence 47899999999887 667778889999999999983 3356643 3667888888888883 332 1211
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcchhhhhcc---------CCCCccEEeeccccCcccccccccCCCCCcE
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLD---------NNSSLEAVKISYCENLIVLPDGLLKLNHLQE 648 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---------~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 648 (861)
.+.++ +|++|++++|..++.+|..+. ++++|++|++++|.+. .+|..+..+++|++
T Consensus 146 -------------l~~l~-~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 146 -------------IASLN-RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210 (328)
T ss_dssp -------------GGGCT-TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred -------------HhcCc-CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence 11222 455555555555555554443 4788888888887765 67777888888888
Q ss_pred EeeccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC-CCCCCccEEEecCccC
Q 038705 649 IFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED-GFPTNLHSLEIRDMKM 727 (861)
Q Consensus 649 L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~-~~~~~L~~L~l~~~~~ 727 (861)
|++++|... .+|..+..+++|++|++++|+..+.+|..+..+++|++|++++|+....+|.. ..+++|++|++++|++
T Consensus 211 L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred EEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 888888543 56666677788888888888888888888888888888888888777777755 4467788888888887
Q ss_pred cccccccccCCcCCCcCeEEeecC
Q 038705 728 WKSLIEWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 728 ~~~~~~~~~~~~l~~L~~L~l~~~ 751 (861)
.+.+|.. +.++++|+.+++..+
T Consensus 290 ~~~iP~~--l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 290 LSRLPSL--IAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCCGG--GGGSCTTCEEECCGG
T ss_pred hhhccHH--HhhccCceEEeCCHH
Confidence 7777766 788888888877764
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=3.7e-22 Score=230.55 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=22.5
Q ss_pred CcccEEEeecccccccchhhhhc-cccccEEEEec
Q 038705 498 CSLQYLELSQCRYLVKLPQALLS-LGFLREMEIYG 531 (861)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~ 531 (861)
++|++|++..+.+.+..+..+.. +++|+.|++++
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEee
Confidence 36777777666666555555554 77777777764
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.8e-23 Score=233.67 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=57.2
Q ss_pred CcccEEEccCcccccc--CcccCCCCccceeeccCCccc-----ccchhhhccccccEEecCCccchhhchhhhh-hcc-
Q 038705 120 QRLRVLSLRGYSIFHV--PSSIGDLKHLQYLDLSETKIK-----TLPESVNKLWNLHTLLLENCHRLKKLCANMG-SLI- 190 (861)
Q Consensus 120 ~~L~~L~L~~~~i~~l--p~~~~~L~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~-~L~- 190 (861)
++|++||+++|.++.. ...+..+++|++|++++|.++ .+|..+..+++|++|++++|.+....+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3566677776666543 222566667777777777665 3455566667777777776654444443332 344
Q ss_pred ---ccceeecCCCcccc----cCccccccccccccc
Q 038705 191 ---KLHHLKNSNVKALE----EMPKGIGNLTHLLTL 219 (861)
Q Consensus 191 ---~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L 219 (861)
+|++|++++|.+.. .+|..+.++++|++|
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 118 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEE
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEE
Confidence 47777777666331 234445555555554
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.9e-22 Score=233.09 Aligned_cols=407 Identities=14% Similarity=0.041 Sum_probs=227.1
Q ss_pred hhhcccCCccEEeecccccCc------CCcccchhhhhhc-cCCCCcccEEEccCcccccc-CcccCCC--Cccceeecc
Q 038705 82 EVLSDAKRLRTFLPLVLSNTW------SGKAYLAHSVLYM-LFKLQRLRVLSLRGYSIFHV-PSSIGDL--KHLQYLDLS 151 (861)
Q Consensus 82 ~~~~~~~~Lr~L~l~~~~~~~------~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l-p~~~~~L--~~L~~L~Ls 151 (861)
..+..+++||.|.+.+..... ..+.......... +..+++|++|+|++|.++.. +..+... .+|++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 345577888888875522100 0001111112222 44788888999988877633 4455443 448888888
Q ss_pred CCc-cc--ccchhhhccccccEEecCCccchhh----chhhhhhccccceeecCCCccc----ccCcccccccccccccc
Q 038705 152 ETK-IK--TLPESVNKLWNLHTLLLENCHRLKK----LCANMGSLIKLHHLKNSNVKAL----EEMPKGIGNLTHLLTLS 220 (861)
Q Consensus 152 ~~~-i~--~lp~~i~~L~~L~~L~l~~n~~~~~----lp~~~~~L~~L~~L~l~~~~~~----~~~p~~i~~l~~L~~L~ 220 (861)
+|. ++ .++..+.++++|++|++++|.+.+. ++.....+++|++|++++|.+. ..++..+.++++|+.|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 875 33 3444456888889999988865433 4455677888888888888743 23333355667777664
Q ss_pred ceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcccCC
Q 038705 221 RFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKP 300 (861)
Q Consensus 221 ~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (861)
+..+.. ......+..+++|++|.++.+...... ......+..
T Consensus 227 L~~~~~-------------------------------~~l~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~l~~ 268 (592)
T 3ogk_B 227 VGDFEI-------------------------------LELVGFFKAAANLEEFCGGSLNEDIGM-------PEKYMNLVF 268 (592)
T ss_dssp CSSCBG-------------------------------GGGHHHHHHCTTCCEEEECBCCCCTTC-------TTSSSCCCC
T ss_pred ccCccH-------------------------------HHHHHHHhhhhHHHhhcccccccccch-------HHHHHHhhc
Confidence 332110 012233556677777777642211110 012234566
Q ss_pred CCCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCC--CCCCCCCcceeeeccccceeEECccccCCcCcCC
Q 038705 301 HRNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLP--SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVP 378 (861)
Q Consensus 301 ~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 378 (861)
+++|+.|.+.+.....+|.++. .+++|++|++++|.+.+... .+..+++|+.|+++++-.-..+. .+ ...
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~--~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~-~~-----~~~ 340 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFP--FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE-VL-----AQY 340 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGG--GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH-HH-----HHH
T ss_pred cccccccCccccchhHHHHHHh--hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHH-HH-----HHh
Confidence 7788888888766666676653 47889999998888433222 25778888888887331111111 01 022
Q ss_pred CCCcceEeccc----------cccccccccCCCCCcccccCccceEeccCCCCCcCCCC----CCCCCcceEEEec---c
Q 038705 379 FPSLETLCFQD----------IQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLP----ECLSSLERLVVRG---C 441 (861)
Q Consensus 379 ~~~L~~L~l~~----------~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~---~ 441 (861)
+++|++|++++ ++.+.......+... +++|++|++ +|+.+++..+ ..+++|+.|++.+ |
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~---~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG---CQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH---CTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhh---CccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 67888888884 555543322221111 678888888 4466653322 2356777777774 3
Q ss_pred CCCccc---------CCCCCccceEEEccCCC-CcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeeccccc
Q 038705 442 EQLTVL---------VSSLPKLCKLEIGGCKG-MAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYL 511 (861)
Q Consensus 442 ~~l~~~---------~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~ 511 (861)
..+... +..+++|+.|+++.|.. +..... ..+....++|++|++++|.+.
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~--------------------~~~~~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL--------------------SYIGQYSPNVRWMLLGYVGES 476 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH--------------------HHHHHSCTTCCEEEECSCCSS
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH--------------------HHHHHhCccceEeeccCCCCC
Confidence 344321 33466777777765542 111000 000011146777777777665
Q ss_pred c-cchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCC
Q 038705 512 V-KLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCA 559 (861)
Q Consensus 512 ~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 559 (861)
+ .++..+..+++|++|++++|.+....++. ....+++|++|++++|.
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCCFSERAIAA-AVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCCCBHHHHHH-HHHHCSSCCEEEEESCB
T ss_pred HHHHHHHHhcCcccCeeeccCCCCcHHHHHH-HHHhcCccCeeECcCCc
Confidence 4 23334556677777777777322222221 12345667777777764
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=200.92 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=44.5
Q ss_pred cccEEEeecccccc----cchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCC
Q 038705 499 SLQYLELSQCRYLV----KLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCA 559 (861)
Q Consensus 499 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 559 (861)
.++.++++++.+.+ .+|..+..+++|+.|++++| .+..+|...+..+++|++|++++|+
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N--~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN--QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCC--CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 45555565555543 46778889999999999999 4557887777788899999999884
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.8e-19 Score=199.05 Aligned_cols=227 Identities=15% Similarity=0.137 Sum_probs=173.2
Q ss_pred CCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcc
Q 038705 496 FPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLE 575 (861)
Q Consensus 496 ~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 575 (861)
+|++++.|++++|.+....+..|.++++|++|++++| .+..++...+..+++|++|++++| .++.+.+..
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~------- 131 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN--HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGA------- 131 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS--CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTT-------
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC--cCCccChhhccCCccCCEEECCCC-cCCeeCHhH-------
Confidence 3468999999999999888889999999999999999 556677677788999999999998 344311110
Q ss_pred EEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccc-cccCCCCCcEEeeccC
Q 038705 576 HLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPD-GLLKLNHLQEIFISHC 654 (861)
Q Consensus 576 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~ 654 (861)
...++ +|++|++++|......+..+..+++|++|++++|+..+.++. .|.++++|++|++++|
T Consensus 132 ---------------~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 132 ---------------FVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp ---------------SCSCS-SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred ---------------hhccc-cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 11222 688888888855444445677888888888888777666654 6778888888888888
Q ss_pred CCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCccccc
Q 038705 655 PNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLI 732 (861)
Q Consensus 655 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~ 732 (861)
.+..+|. +..+++|++|++++|.+.+..|..+.++++|++|++++| .+..++.. ..+++|++|++++|++....+
T Consensus 196 -~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 196 -NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp -CCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred -cCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 4556664 667788888888888877777888888888888888888 46565544 336888888888888776554
Q ss_pred ccccCCcCCCcCeEEeecCCC
Q 038705 733 EWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 733 ~~~~~~~l~~L~~L~l~~~~~ 753 (861)
.. +..+++|+.|++++|+.
T Consensus 273 ~~--~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 273 DL--FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TT--TSSCTTCCEEECCSSCE
T ss_pred hH--hccccCCCEEEcCCCCc
Confidence 43 78888999999988864
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.9e-19 Score=199.51 Aligned_cols=227 Identities=16% Similarity=0.141 Sum_probs=172.5
Q ss_pred CCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcc
Q 038705 496 FPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLE 575 (861)
Q Consensus 496 ~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 575 (861)
+|+++++|++++|.+.+..+..|..+++|++|++++| .+..++...+..+++|++|++++|. ++.+.+..
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------- 142 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN--SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGA------- 142 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTT-------
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC--ccCCcChhhccCcccCCEEECCCCc-CCccChhh-------
Confidence 4469999999999999888889999999999999999 5566776777889999999999983 44311110
Q ss_pred EEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccc-cccCCCCCcEEeeccC
Q 038705 576 HLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPD-GLLKLNHLQEIFISHC 654 (861)
Q Consensus 576 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~ 654 (861)
.+.++ +|++|++++|......+..+..+++|+.|++++|+..+.++. .+.++++|++|++++|
T Consensus 143 ---------------~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 143 ---------------FEYLS-KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp ---------------SSSCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred ---------------hcccC-CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 11233 688888888855444444677888888888888777776654 5778888888888888
Q ss_pred CCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCccccc
Q 038705 655 PNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLI 732 (861)
Q Consensus 655 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~ 732 (861)
. +..+| .+..+++|++|++++|.+.+..|..+.++++|++|++++| .+..++.. ..+++|++|++++|.+....+
T Consensus 207 ~-l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 207 N-IKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp C-CSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred c-ccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 4 44455 3667788888888888877777888888888888888888 45555444 336888888988888775444
Q ss_pred ccccCCcCCCcCeEEeecCCC
Q 038705 733 EWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 733 ~~~~~~~l~~L~~L~l~~~~~ 753 (861)
.. +..+++|+.|++++|+.
T Consensus 284 ~~--~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 284 DL--FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TS--STTCTTCCEEECCSSCE
T ss_pred HH--hccccCCCEEEccCCCc
Confidence 43 77888999999988864
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=8.7e-20 Score=191.25 Aligned_cols=231 Identities=19% Similarity=0.115 Sum_probs=157.3
Q ss_pred CCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcc
Q 038705 496 FPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLE 575 (861)
Q Consensus 496 ~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 575 (861)
+|++|++|++++|.+....+..+..+++|++|++++|...........+..+++|++|++++|. ++.
T Consensus 26 ~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~------------ 92 (306)
T 2z66_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VIT------------ 92 (306)
T ss_dssp CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEE------------
T ss_pred CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-ccc------------
Confidence 3468899999998887555556788889999999888433211111222456788888888873 222
Q ss_pred EEEEecCCCcccccccCCCcccCcEEeeccccCcchhh-hhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccC
Q 038705 576 HLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLA-ERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHC 654 (861)
Q Consensus 576 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 654 (861)
+.- ....++ +|++|++++|...+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 93 -l~~----------~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 93 -MSS----------NFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp -EEE----------EEETCT-TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred -Chh----------hcCCCC-CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence 100 011222 68888888874433322 45677888888888888877777777778888888888888
Q ss_pred CCce-ecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccc
Q 038705 655 PNLI-SFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSL 731 (861)
Q Consensus 655 ~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~ 731 (861)
.... .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++| .+..++.. ..+++|++|++++|++.+..
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccC
Confidence 5544 46777777788888888888776666777788888888888888 45555443 34678888888888777666
Q ss_pred cccccCCcCC-CcCeEEeecCCCc
Q 038705 732 IEWEPLNRFT-SLRRLSIHGCQDM 754 (861)
Q Consensus 732 ~~~~~~~~l~-~L~~L~l~~~~~~ 754 (861)
+.. +..++ +|+.|++++|+..
T Consensus 240 ~~~--~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 240 KQE--LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SSS--CCCCCTTCCEEECTTCCEE
T ss_pred HHH--HHhhhccCCEEEccCCCee
Confidence 554 66664 7888888887543
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.5e-22 Score=226.13 Aligned_cols=263 Identities=16% Similarity=0.065 Sum_probs=172.5
Q ss_pred CCceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCcccccc-Cccc-
Q 038705 62 SENLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHV-PSSI- 139 (861)
Q Consensus 62 ~~~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~- 139 (861)
+.+++++.+.++.+........+..+++|++|.+.++.- .......++..+..+++|++|+|++|.++.. +..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l----~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL----TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC----CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCC----CHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 457889999988876543333477899999999976441 0011124455588999999999999998753 3333
Q ss_pred CCCC----ccceeeccCCccc-----ccchhhhccccccEEecCCccchhhchhhhhh-----ccccceeecCCCccccc
Q 038705 140 GDLK----HLQYLDLSETKIK-----TLPESVNKLWNLHTLLLENCHRLKKLCANMGS-----LIKLHHLKNSNVKALEE 205 (861)
Q Consensus 140 ~~L~----~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~-----L~~L~~L~l~~~~~~~~ 205 (861)
..+. +|++|++++|.++ .+|..+.++++|++|++++|.+....+..+.. .++|++|++++|.+...
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 3455 7999999999988 46888999999999999999766555555543 46799999999985442
Q ss_pred ----CccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhh-cccCcchhheeeccC
Q 038705 206 ----MPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLI-EKRNLLRLLLEWTSS 280 (861)
Q Consensus 206 ----~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~ 280 (861)
++..+..+++|++|++..+.... .....+...+. ..++|++|++++|..
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~--------------------------~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINE--------------------------AGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHH--------------------------HHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcch--------------------------HHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 34556677888887554332100 00111111121 345778888877654
Q ss_pred CCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCC------CcCCCCCCcCCeeEEEEeCCCCCCC----CC-CCCCC
Q 038705 281 TSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTF------PTWMGDSSFANLVLLRFEGCHRCTS----LP-SVGQL 349 (861)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~------p~~~~~~~~~~L~~L~L~~~~~~~~----~~-~l~~l 349 (861)
+.. ........+..+++|++|++++|..... +.+. ..+++|++|++++|.+... ++ .+..+
T Consensus 212 ~~~------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 212 TSD------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL--HPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283 (461)
T ss_dssp BTT------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT--STTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred cHH------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh--cCCCCceEEECcCCCCCHHHHHHHHHHHhhC
Confidence 221 1112233344567888888888764432 2222 1367899999999877553 33 45668
Q ss_pred CCcceeeeccccc
Q 038705 350 PLLKHLFIIEMTS 362 (861)
Q Consensus 350 ~~L~~L~l~~~~~ 362 (861)
++|++|++++|..
T Consensus 284 ~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 284 ESLKELSLAGNEL 296 (461)
T ss_dssp TTCCEEECTTCCC
T ss_pred CCcceEECCCCCC
Confidence 8999999988853
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=2e-20 Score=196.64 Aligned_cols=241 Identities=12% Similarity=0.106 Sum_probs=166.0
Q ss_pred CcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 498 CSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
++|++|++++|.+.+..+..+..+++|++|++++|. +...+. +..+++|++|++++| .++.+. ..++|++|
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETL 104 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC--CEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc--CCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEE
Confidence 589999999999998888899999999999999993 333333 478899999999998 444422 23677777
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCccccccccc-CCCCCcEEeeccCCC
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLL-KLNHLQEIFISHCPN 656 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~ 656 (861)
+++++. +..++ ...++ +|++|++++|...+..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|..
T Consensus 105 ~l~~n~-l~~~~-~~~~~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNN-ISRVS-CSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSC-CSEEE-ECCCS-SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCc-cCCcC-ccccC-CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 777653 44443 22333 578888887755555555666777788888888777766666553 577788888887743
Q ss_pred ceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC-CCCCCccEEEecCccCc-cccccc
Q 038705 657 LISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED-GFPTNLHSLEIRDMKMW-KSLIEW 734 (861)
Q Consensus 657 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~-~~~~~L~~L~l~~~~~~-~~~~~~ 734 (861)
+.++.. ..+++|++|++++|.+. .+|..+..+++|++|++++| .++.+|.. ..+++|+.|++++|++. ...+..
T Consensus 182 -~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 182 -YDVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp -CEEECC-CCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred -cccccc-cccccCCEEECCCCcCC-cchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 333432 23677888888777744 34455777777888888777 45566554 44677777777777776 333333
Q ss_pred ccCCcCCCcCeEEeecCCCccc
Q 038705 735 EPLNRFTSLRRLSIHGCQDMVS 756 (861)
Q Consensus 735 ~~~~~l~~L~~L~l~~~~~~~~ 756 (861)
+..+++|+.+++++|+.+..
T Consensus 258 --~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 258 --FSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp --HHTCHHHHHHHHHHHHHHHS
T ss_pred --HhccccceEEECCCchhccC
Confidence 66677777777776654433
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=4.5e-19 Score=196.61 Aligned_cols=228 Identities=18% Similarity=0.161 Sum_probs=162.5
Q ss_pred CCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccE
Q 038705 593 NLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTK 672 (861)
Q Consensus 593 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 672 (861)
.+|+++++|++++|...+..+..+.++++|++|+|++|.+.+..+..|.++++|++|++++|......+..+..+++|++
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 34557888888888665555677788888888888888877777777888888888888888544433344666788888
Q ss_pred EEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeec
Q 038705 673 LWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHG 750 (861)
Q Consensus 673 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (861)
|++++|.+....+..+..+++|++|++++|..+..++.. ..+++|++|++++|.+... +. +..+++|+.|++++
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~---~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN---LTPLVGLEELEMSG 227 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC---CTTCTTCCEEECTT
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc---ccccccccEEECcC
Confidence 888888766555556788888888888887777777765 3367888888888877643 32 77788888888888
Q ss_pred CCCccccCCCcccCcCCCCccEEEeccCCCCcccccC-CCCCCCCCEEeccCCCCcccCCCCC--CccccceeeccCCcc
Q 038705 751 CQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSV-GESLPSLECLILDDCPKLRYFPDKG--LPPSLLQLHISNCPL 827 (861)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~--~~~sL~~L~l~~c~~ 827 (861)
|......+... ..+++|+.|++.++. ++.+... ...+++|+.|++++| +++.++... .+++|++|++++||.
T Consensus 228 N~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 228 NHFPEIRPGSF---HGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SCCSEECGGGG---TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CcCcccCcccc---cCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 85443333322 234678888877753 3333322 377889999999998 677777533 368899999999985
Q ss_pred hH
Q 038705 828 IE 829 (861)
Q Consensus 828 l~ 829 (861)
..
T Consensus 303 ~C 304 (452)
T 3zyi_A 303 NC 304 (452)
T ss_dssp EC
T ss_pred CC
Confidence 43
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=7.7e-20 Score=192.22 Aligned_cols=264 Identities=13% Similarity=0.053 Sum_probs=181.7
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+++..+++.+.+.......+..+++|++|++++| .+..++...+..+++|++|++++|. ++...+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------ 75 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN--PLSQISAADLAPFTKLELLNLSSNV-LYETLD------------ 75 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS--CCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE------------
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC--ccCcCCHHHhhCCCcCCEEECCCCc-CCcchh------------
Confidence 6777788888877666667778889999999999 5555665556788999999999984 332110
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCce
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLI 658 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 658 (861)
...++ +|++|++++|. ++.++ ..++|++|++++|.+.+..+.. +++|++|++++|....
T Consensus 76 ------------~~~l~-~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~ 134 (317)
T 3o53_A 76 ------------LESLS-TLRTLDLNNNY-VQELL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITM 134 (317)
T ss_dssp ------------ETTCT-TCCEEECCSSE-EEEEE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCS
T ss_pred ------------hhhcC-CCCEEECcCCc-ccccc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCC
Confidence 12233 68888888884 33333 2378888888888877655443 5778888888886655
Q ss_pred ecCCCCCCcCCccEEEeccccCcccccccC-CCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccC
Q 038705 659 SFPDGGFLSSTLTKLWIYECEKLKALPNGM-HNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPL 737 (861)
Q Consensus 659 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 737 (861)
..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++| .++.++...++++|++|++++|.+....+. +
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~---~ 210 (317)
T 3o53_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFMGPE---F 210 (317)
T ss_dssp GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCCCEECGG---G
T ss_pred ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCcccccccccccCCEEECCCCcCCcchhh---h
Confidence 555566778888888888888776666555 46788899999888 566666666788899999988887754332 7
Q ss_pred CcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCCCCCCCCCEEeccCCCCc-ccCCC-CCCcc
Q 038705 738 NRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVGESLPSLECLILDDCPKL-RYFPD-KGLPP 815 (861)
Q Consensus 738 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l-~~~~~-~~~~~ 815 (861)
..+++|+.|++++|. ++.+|... ..+++|+.|++++|+.. ..++. ....+
T Consensus 211 ~~l~~L~~L~L~~N~-l~~l~~~~---------------------------~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 211 QSAAGVTWISLRNNK-LVLIEKAL---------------------------RFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp GGGTTCSEEECTTSC-CCEECTTC---------------------------CCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred cccCcccEEECcCCc-ccchhhHh---------------------------hcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 788889999998883 33444321 44556667777766544 22221 12245
Q ss_pred ccceeeccCCcchHH
Q 038705 816 SLLQLHISNCPLIEE 830 (861)
Q Consensus 816 sL~~L~l~~c~~l~~ 830 (861)
.|+.+++++|+.++.
T Consensus 263 ~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 263 RVQTVAKQTVKKLTG 277 (317)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred cceEEECCCchhccC
Confidence 666666665555443
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=6.9e-20 Score=189.74 Aligned_cols=237 Identities=17% Similarity=0.112 Sum_probs=176.1
Q ss_pred CCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcc
Q 038705 496 FPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLE 575 (861)
Q Consensus 496 ~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 575 (861)
+|++|++|++++|.+.+..+..+..+++|++|++++| .+..+....+..+++|++|++++|..++.+.+..
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~------- 100 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN--VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT------- 100 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT-------
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC--ccceeCHhhcCCccCCCEEeCCCCCCccccCHHH-------
Confidence 4468999999999998877778999999999999999 4555655556778899999999885444421111
Q ss_pred EEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCC
Q 038705 576 HLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCP 655 (861)
Q Consensus 576 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 655 (861)
...++ +|++|++++|...+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 101 ---------------~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 101 ---------------FHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp ---------------TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------hcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 12233 68888888886666667778889999999999998877767778889999999999995
Q ss_pred CceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccc
Q 038705 656 NLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIE 733 (861)
Q Consensus 656 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~ 733 (861)
.....+..+..+++|+.|++++|.+.+..|..+..+++|++|++++| .+..++.. ..+++|+.|++++|++..+...
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 44433445777899999999999987777888999999999999999 56666543 4578999999999988754332
Q ss_pred cccCCcCCCcCeEEeecCCCccccCCCc
Q 038705 734 WEPLNRFTSLRRLSIHGCQDMVSFPQDN 761 (861)
Q Consensus 734 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 761 (861)
.. -...++.+..+.+......|+..
T Consensus 244 ~~---~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 244 RP---LWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HH---HHHHHHHCCSEECCCBEEESGGG
T ss_pred HH---HHHHHHhcccccCccccCCchHh
Confidence 11 11234555566665555666543
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=7.6e-19 Score=194.02 Aligned_cols=227 Identities=16% Similarity=0.175 Sum_probs=144.9
Q ss_pred CcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEE
Q 038705 594 LPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKL 673 (861)
Q Consensus 594 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 673 (861)
+|++++.|++++|......+..+.++++|++|+|++|.+.+..+..|.++++|++|++++|......+..+..+++|++|
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 34467777777775544445666777777777777777666666667777777777777774333323345566777777
Q ss_pred EeccccCcccccccCCCCCccCEEeecCCCCCcccCCCC--CCCCccEEEecCccCcccccccccCCcCCCcCeEEeecC
Q 038705 674 WIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDG--FPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 674 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 751 (861)
++++|.+....+..+..+++|++|++++|..+..++... .+++|++|++++|.+.. ++. +..+++|+.|++++|
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~---~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN---LTPLIKLDELDLSGN 217 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCC---CTTCSSCCEEECTTS
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccc---cCCCcccCEEECCCC
Confidence 777777555445566777777777777766666666542 36677777777776653 232 667777777777777
Q ss_pred CCccccCCCcccCcCCCCccEEEeccCCCCcccccC-CCCCCCCCEEeccCCCCcccCCCC--CCccccceeeccCCcch
Q 038705 752 QDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSV-GESLPSLECLILDDCPKLRYFPDK--GLPPSLLQLHISNCPLI 828 (861)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~--~~~~sL~~L~l~~c~~l 828 (861)
......+... .-+++|+.|++.++. ++.+... ...+++|+.|++++| +++.++.. ..+++|++|++++||..
T Consensus 218 ~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 218 HLSAIRPGSF---QGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCEECTTTT---TTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccCccChhhh---ccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCcc
Confidence 4332222222 124566777766643 3333322 267788899999887 67776653 33678899999988864
Q ss_pred H
Q 038705 829 E 829 (861)
Q Consensus 829 ~ 829 (861)
.
T Consensus 293 C 293 (440)
T 3zyj_A 293 C 293 (440)
T ss_dssp C
T ss_pred C
Confidence 3
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=3.2e-18 Score=194.11 Aligned_cols=162 Identities=25% Similarity=0.249 Sum_probs=119.8
Q ss_pred CCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEee
Q 038705 572 ATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFI 651 (861)
Q Consensus 572 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 651 (861)
++|++|++++| .++.++ ..+++|+.|++++| .++.+| ..+++|+.|++++|.+.+ +|.. +++|+.|++
T Consensus 141 ~~L~~L~Ls~N-~l~~l~---~~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L 208 (622)
T 3g06_A 141 PGLQELSVSDN-QLASLP---ALPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWA 208 (622)
T ss_dssp TTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CCCCEEECcCC-cCCCcC---CccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEEC
Confidence 45555555544 233333 23457888999888 445566 456889999999988664 4443 478999999
Q ss_pred ccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccc
Q 038705 652 SHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSL 731 (861)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~ 731 (861)
++|. +..+|.. +++|+.|++++|.+. .+| ..+++|+.|++++| .++.+|. .+++|+.|++++|.+. .+
T Consensus 209 ~~N~-l~~l~~~---~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~L~-~l 276 (622)
T 3g06_A 209 YNNR-LTSLPAL---PSGLKELIVSGNRLT-SLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQLT-RL 276 (622)
T ss_dssp CSSC-CSSCCCC---CTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCC-SC
T ss_pred cCCc-ccccCCC---CCCCCEEEccCCccC-cCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCCCC-cC
Confidence 9984 5566653 478999999998754 466 45688999999999 6778877 7789999999999887 55
Q ss_pred cccccCCcCCCcCeEEeecCCCccccCC
Q 038705 732 IEWEPLNRFTSLRRLSIHGCQDMVSFPQ 759 (861)
Q Consensus 732 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 759 (861)
|.. +..+++|+.|++++|+..+..+.
T Consensus 277 p~~--l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 277 PES--LIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CGG--GGGSCTTCEEECCSCCCCHHHHH
T ss_pred CHH--HhhccccCEEEecCCCCCCcCHH
Confidence 554 88999999999999987655543
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=1.6e-18 Score=196.58 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=61.0
Q ss_pred CcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccceeecCC
Q 038705 120 QRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSN 199 (861)
Q Consensus 120 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~ 199 (861)
.++++|++++|.++.+|..+. ++|++|++++|.|+.+|. .+++|++|++++|. +..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 357888888888888777665 688888888888887776 56778888888874 445665 667788888887
Q ss_pred CcccccCccccccccccccc
Q 038705 200 VKALEEMPKGIGNLTHLLTL 219 (861)
Q Consensus 200 ~~~~~~~p~~i~~l~~L~~L 219 (861)
|. +..+|. .+++|+.|
T Consensus 111 N~-l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 111 NP-LTHLPA---LPSGLCKL 126 (622)
T ss_dssp CC-CCCCCC---CCTTCCEE
T ss_pred Cc-CCCCCC---CCCCcCEE
Confidence 77 444554 33444444
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=9.3e-19 Score=187.34 Aligned_cols=276 Identities=18% Similarity=0.150 Sum_probs=168.1
Q ss_pred CCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeeccccceeEECccccCCcCcCCCC
Q 038705 302 RNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFP 380 (861)
Q Consensus 302 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 380 (861)
+.....+.+++....+|..+ .++|++|++++|.+.+..+ .++.+++|+.|++++|......+..+.+ ++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~ 100 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGL----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS------LG 100 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTC----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------CT
T ss_pred CCCeEeeCCCCCcccccccc----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC------CC
Confidence 44455677777788888754 4589999999998876555 6888999999999888544333333322 78
Q ss_pred CcceEeccccccccccccCCCCCcccccCccceEeccCCCCCcCCCCCCCCCcceEEEeccCCCcccCCCCCccceEEEc
Q 038705 381 SLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLPECLSSLERLVVRGCEQLTVLVSSLPKLCKLEIG 460 (861)
Q Consensus 381 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 460 (861)
+|++|++++ +.+..+....+.. +++|++|++++ +.++ .+|.. ..+..+++|+.|+++
T Consensus 101 ~L~~L~Ls~-n~l~~~~~~~~~~----l~~L~~L~L~~-n~l~-~l~~~----------------~~~~~l~~L~~L~l~ 157 (353)
T 2z80_A 101 SLEHLDLSY-NYLSNLSSSWFKP----LSSLTFLNLLG-NPYK-TLGET----------------SLFSHLTKLQILRVG 157 (353)
T ss_dssp TCCEEECCS-SCCSSCCHHHHTT----CTTCSEEECTT-CCCS-SSCSS----------------CSCTTCTTCCEEEEE
T ss_pred CCCEEECCC-CcCCcCCHhHhCC----CccCCEEECCC-CCCc-ccCch----------------hhhccCCCCcEEECC
Confidence 888888887 5666555433444 78888888888 4665 44430 123344555566665
Q ss_pred cCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeecccccccchhhhhccccccEEEEecccccccccc
Q 038705 461 GCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQ 540 (861)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 540 (861)
+|..+..... ..+..+ ++|++|++++|.+.+..|..+..+++|++|++++| .+..++
T Consensus 158 ~n~~~~~~~~--------------------~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--~l~~~~ 214 (353)
T 2z80_A 158 NMDTFTKIQR--------------------KDFAGL-TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK--QHILLL 214 (353)
T ss_dssp ESSSCCEECT--------------------TTTTTC-CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS--CSTTHH
T ss_pred CCccccccCH--------------------HHccCC-CCCCEEECCCCCcCccCHHHHhccccCCeecCCCC--ccccch
Confidence 5532221111 111222 47888888888888877888888888999999888 345566
Q ss_pred cccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcc----hhhhhc
Q 038705 541 SSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLK----SLAERL 616 (861)
Q Consensus 541 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~----~~~~~~ 616 (861)
...+..+++|++|++++|. ++...+. .++ .......++.++++++...+ .+|..+
T Consensus 215 ~~~~~~~~~L~~L~L~~n~-l~~~~~~-------------------~l~-~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTD-LDTFHFS-------------------ELS-TGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp HHHHHHTTTEEEEEEESCB-CTTCCCC--------------------------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred hhhhhhcccccEEECCCCc-ccccccc-------------------ccc-cccccchhhccccccccccCcchhhhHHHH
Confidence 5555567888888888873 3321100 000 00111245555555553322 345555
Q ss_pred cCCCCccEEeeccccCccccccc-ccCCCCCcEEeeccCC
Q 038705 617 DNNSSLEAVKISYCENLIVLPDG-LLKLNHLQEIFISHCP 655 (861)
Q Consensus 617 ~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~L~~~~ 655 (861)
..+++|+.|++++|.+. .+|.. +..+++|++|++++|+
T Consensus 274 ~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 274 NQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 56666666666666554 33333 3555666666666654
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=9e-19 Score=183.50 Aligned_cols=206 Identities=21% Similarity=0.145 Sum_probs=148.0
Q ss_pred cccEEEeecccccc--cchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccE
Q 038705 499 SLQYLELSQCRYLV--KLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEH 576 (861)
Q Consensus 499 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~ 576 (861)
+|++|++++|.+.. ..+..+..+++|++|++++| .+..++.. +..+++|++|++++|. ++.+.+
T Consensus 53 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n--~i~~l~~~-~~~l~~L~~L~l~~n~-l~~~~~---------- 118 (306)
T 2z66_A 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSN-FLGLEQLEHLDFQHSN-LKQMSE---------- 118 (306)
T ss_dssp TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC--SEEEEEEE-EETCTTCCEEECTTSE-EESSTT----------
T ss_pred cCCEEECCCCccCcccCcccccccccccCEEECCCC--ccccChhh-cCCCCCCCEEECCCCc-cccccc----------
Confidence 66777777776653 23556667788888888887 33444443 3567778888887772 222110
Q ss_pred EEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcc-cccccccCCCCCcEEeeccCC
Q 038705 577 LHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLI-VLPDGLLKLNHLQEIFISHCP 655 (861)
Q Consensus 577 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~ 655 (861)
......++ +|++|++++|...+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.
T Consensus 119 -----------~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 119 -----------FSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp -----------TTTTTTCT-TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred -----------chhhhhcc-CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 00112233 68888888887666677778888999999999988876 578888899999999999997
Q ss_pred CceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCccc
Q 038705 656 NLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKS 730 (861)
Q Consensus 656 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~ 730 (861)
.....|..+..+++|++|++++|.+.+..+..+..+++|++|++++|+.....+.. .++++|++|++++|++...
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 66666777788899999999999877666667888999999999999544434333 2346899999999988654
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=4.8e-19 Score=197.14 Aligned_cols=234 Identities=12% Similarity=0.090 Sum_probs=170.3
Q ss_pred CcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 498 CSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
++|++|++++|.+.+..|..|..+++|++|++++|. +...+. +..+++|++|++++| .++.+.+ .++|+.|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC--CEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC--CCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 589999999999999888899999999999999993 333333 578999999999999 4554221 3678888
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCccccccccc-CCCCCcEEeeccCCC
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLL-KLNHLQEIFISHCPN 656 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~ 656 (861)
+++++. +..++ ...++ +|+.|++++|...+..|..++.+++|+.|++++|.+.+..|..+. .+++|++|++++|..
T Consensus 105 ~L~~N~-l~~~~-~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNN-ISRVS-CSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSC-CCCEE-ECCCS-SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCc-CCCCC-ccccC-CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 888754 44444 22344 688888888866666666777788888888888888777777765 678888888888854
Q ss_pred ceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC-CCCCCccEEEecCccCc-cccccc
Q 038705 657 LISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED-GFPTNLHSLEIRDMKMW-KSLIEW 734 (861)
Q Consensus 657 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~-~~~~~L~~L~l~~~~~~-~~~~~~ 734 (861)
... |. ...+++|+.|++++|.+.+ +|..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|++. ..++..
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 443 33 2346788888888887554 4445777888888888888 45556654 45678888888888776 333333
Q ss_pred ccCCcCCCcCeEEee
Q 038705 735 EPLNRFTSLRRLSIH 749 (861)
Q Consensus 735 ~~~~~l~~L~~L~l~ 749 (861)
+..++.|+.++++
T Consensus 258 --~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 --FSKNQRVQTVAKQ 270 (487)
T ss_dssp --HTTCHHHHHHHHH
T ss_pred --HHhCCCCcEEecc
Confidence 6667777777775
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=7.8e-21 Score=219.66 Aligned_cols=407 Identities=14% Similarity=0.098 Sum_probs=207.0
Q ss_pred hhhcccCCccEEeecccccC----cC--Ccccchhhhhhc-cCCCCcccEEEccCcccccc-CcccC-CCCccceeeccC
Q 038705 82 EVLSDAKRLRTFLPLVLSNT----WS--GKAYLAHSVLYM-LFKLQRLRVLSLRGYSIFHV-PSSIG-DLKHLQYLDLSE 152 (861)
Q Consensus 82 ~~~~~~~~Lr~L~l~~~~~~----~~--~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l-p~~~~-~L~~L~~L~Ls~ 152 (861)
..+.++++|++|.+.+.... +. .+.......... +..+++|++|+|++|.++.. +..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 45667889999988664310 00 000000111122 45677888888888887633 44453 578888888888
Q ss_pred C-cccc--cchhhhccccccEEecCCccchhhchhhh----hhccccceeecCCCcccccCc-cc----ccccccccccc
Q 038705 153 T-KIKT--LPESVNKLWNLHTLLLENCHRLKKLCANM----GSLIKLHHLKNSNVKALEEMP-KG----IGNLTHLLTLS 220 (861)
Q Consensus 153 ~-~i~~--lp~~i~~L~~L~~L~l~~n~~~~~lp~~~----~~L~~L~~L~l~~~~~~~~~p-~~----i~~l~~L~~L~ 220 (861)
| .++. ++..+.++++|++|++++|.+.+..+..+ ..+++|++|++++|. ..+. .. +.++++|+.|+
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEE
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEe
Confidence 8 5653 55556688888888888886444333333 356688888888775 2221 11 23346666553
Q ss_pred ceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcccCC
Q 038705 221 RFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKP 300 (861)
Q Consensus 221 ~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 300 (861)
+. .. ..... .+..+..+++|++|.+..+... ............+..
T Consensus 218 L~--------------------------~~---~~~~~-l~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 218 LN--------------------------RA---VPLEK-LATLLQRAPQLEELGTGGYTAE----VRPDVYSGLSVALSG 263 (594)
T ss_dssp CC--------------------------TT---SCHHH-HHHHHHHCTTCSEEECSBCCCC----CCHHHHHHHHHHHHT
T ss_pred cC--------------------------CC---CcHHH-HHHHHhcCCcceEcccccccCc----cchhhHHHHHHHHhc
Confidence 32 11 11111 4444566777777776543210 111122223334566
Q ss_pred CCCccEE-EEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCC-C-CCCCCCCcceeeeccccceeEECccccCCcCcC
Q 038705 301 HRNLEEL-TIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSL-P-SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSV 377 (861)
Q Consensus 301 ~~~L~~L-~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 377 (861)
+++|+.+ .+.......+|.... .+++|++|++++|.+.... . .+..+++|+.|++++|- ...+... ...
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~----l~~ 335 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEV----LAS 335 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHH----HHH
T ss_pred CCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHH----HHH
Confidence 7788877 333322223333321 3678899999888743321 1 24577888888888771 1100000 001
Q ss_pred CCCCcceEecccc--------ccccccccCCCCCcccccCccceEeccCCCCCcCCCC----CCCCCcceEEEe-----c
Q 038705 378 PFPSLETLCFQDI--------QEWEGWIPHGSGKEVNVFPQLRELSLIGCPKLQGRLP----ECLSSLERLVVR-----G 440 (861)
Q Consensus 378 ~~~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~-----~ 440 (861)
.+++|++|++.++ +.+.+.....+..+ +++|+.|.+. |+.+++..+ ..+++|+.|++. +
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~---~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG---CPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH---CTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTC
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh---chhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCC
Confidence 2677888877432 22222211111111 6677777443 355542211 235566677666 3
Q ss_pred cCCCcc---------cCCCCCccceEEEccCCCCcccccccccccccccchhhhhhhhhccCCCCCCcccEEEeeccccc
Q 038705 441 CEQLTV---------LVSSLPKLCKLEIGGCKGMAWRSTNDVNRCCPQLLWLIAEEEQDQQQPVFPCSLQYLELSQCRYL 511 (861)
Q Consensus 441 ~~~l~~---------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~L~l~~~~~~ 511 (861)
|..+.. .+..+++|+.|++++ .+.......+ ....++|++|++++|.+.
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l--------------------~~~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI--------------------GTYAKKMEMLSVAFAGDS 469 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHH--------------------HHHCTTCCEEEEESCCSS
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHH--------------------HHhchhccEeeccCCCCc
Confidence 444431 123355566666544 1111000000 000135666666666654
Q ss_pred ccchhhh-hccccccEEEEecccccccccccccccCCCCccEEEecCCC
Q 038705 512 VKLPQAL-LSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCA 559 (861)
Q Consensus 512 ~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 559 (861)
+..+..+ ..+++|++|++++|... ..........+++|++|++++|.
T Consensus 470 ~~~~~~l~~~~~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 470 DLGMHHVLSGCDSLRKLEIRDCPFG-DKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCSCC-HHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHHHhcCCCcCEEECcCCCCc-HHHHHHHHHhCCCCCEEeeeCCC
Confidence 4333333 44566666666666321 11111112334555555555553
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=3e-18 Score=177.42 Aligned_cols=159 Identities=18% Similarity=0.132 Sum_probs=124.0
Q ss_pred CcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceec-CCCCCCcCCccE
Q 038705 594 LPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISF-PDGGFLSSTLTK 672 (861)
Q Consensus 594 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~ 672 (861)
+|+++++|++++|...+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|..++.+ |..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 4557889999888655555567888899999999998887777888888999999999998745555 666777889999
Q ss_pred EEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeec
Q 038705 673 LWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHG 750 (861)
Q Consensus 673 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (861)
|++++|.+.+..|..+..+++|++|++++| .++.++.. ..+++|++|++++|.+....+.. +..+++|+.|++++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQ 186 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEECCS
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCHHH--hcCccccCEEECCC
Confidence 999998877776778888899999999988 45666654 34788899999888876544433 77888889999988
Q ss_pred CCCcc
Q 038705 751 CQDMV 755 (861)
Q Consensus 751 ~~~~~ 755 (861)
|....
T Consensus 187 n~l~~ 191 (285)
T 1ozn_A 187 NRVAH 191 (285)
T ss_dssp SCCCE
T ss_pred Ccccc
Confidence 85433
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=2.6e-19 Score=187.77 Aligned_cols=152 Identities=17% Similarity=0.129 Sum_probs=112.6
Q ss_pred ccCcEEeeccccCcchhhhhccCCCCccEEeeccccCccc--ccccc--cCCCCCcEEeeccCCCce--ecCCC-CCCcC
Q 038705 596 KALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIV--LPDGL--LKLNHLQEIFISHCPNLI--SFPDG-GFLSS 668 (861)
Q Consensus 596 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~--~~l~~L~~L~L~~~~~~~--~~~~~-~~~~~ 668 (861)
++|++|++++|...+..|..+..+++|++|++++|.+.+. +|..+ ..+++|++|++++|.... .++.. +..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 4788888888866665667888888999999998887665 23334 778889999998885441 22222 23467
Q ss_pred CccEEEeccccCccccc-ccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEE
Q 038705 669 TLTKLWIYECEKLKALP-NGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLS 747 (861)
Q Consensus 669 ~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~ 747 (861)
+|++|++++|.+.+..| ..+..+++|++|++++| .++.+|...+ ++|++|++++|++.+. +. +..+++|++|+
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~l~~~-p~---~~~l~~L~~L~ 302 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP-AKLSVLDLSYNRLDRN-PS---PDELPQVGNLS 302 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC-SEEEEEECCSSCCCSC-CC---TTTSCEEEEEE
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc-CCceEEECCCCCCCCC-hh---HhhCCCCCEEe
Confidence 88999998888777664 45667888999999888 5667776544 8889999998887665 33 77888888999
Q ss_pred eecCCC
Q 038705 748 IHGCQD 753 (861)
Q Consensus 748 l~~~~~ 753 (861)
+++|+.
T Consensus 303 L~~N~l 308 (312)
T 1wwl_A 303 LKGNPF 308 (312)
T ss_dssp CTTCTT
T ss_pred ccCCCC
Confidence 888854
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=2.6e-19 Score=187.69 Aligned_cols=203 Identities=19% Similarity=0.184 Sum_probs=131.5
Q ss_pred CCCcccEEEccCcccc-ccCccc--CCCCccceeeccCCcccccchhhhcc-----ccccEEecCCccchhhchhhhhhc
Q 038705 118 KLQRLRVLSLRGYSIF-HVPSSI--GDLKHLQYLDLSETKIKTLPESVNKL-----WNLHTLLLENCHRLKKLCANMGSL 189 (861)
Q Consensus 118 ~l~~L~~L~L~~~~i~-~lp~~~--~~L~~L~~L~Ls~~~i~~lp~~i~~L-----~~L~~L~l~~n~~~~~lp~~~~~L 189 (861)
++++|++|++++|.++ .+|..+ ..+++|++|++++|.++.+|..++.+ ++|++|++++|.+.+..|..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6777778888777776 456665 77777888888777777667777776 777888887776655555677777
Q ss_pred cccceeecCCCccccc--Ccccc--ccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhh
Q 038705 190 IKLHHLKNSNVKALEE--MPKGI--GNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLI 265 (861)
Q Consensus 190 ~~L~~L~l~~~~~~~~--~p~~i--~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~ 265 (861)
++|++|++++|.+.+. +|..+ +++++|++|++..+ .+ ..........+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N------------------------~l---~~~~~~~~~~~~ 225 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA------------------------GM---ETPSGVCSALAA 225 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS------------------------CC---CCHHHHHHHHHH
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC------------------------cC---cchHHHHHHHHh
Confidence 7788888777775443 23333 66666666643222 11 111122222334
Q ss_pred cccCcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCCC
Q 038705 266 EKRNLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPS 345 (861)
Q Consensus 266 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~~ 345 (861)
.+++|+.|++++|......+. ..+..+++|+.|++++|....+|.++. ++|++|++++|.+.+. |.
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~~~---------~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~-p~ 291 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAAGA---------PSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN-PS 291 (312)
T ss_dssp TTCCCSEEECTTSCCCSSCCC---------SCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-CC
T ss_pred cCCCCCEEECCCCcCCcccch---------hhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-hh
Confidence 567777777777765443311 113345677888888777777776653 6777888887777654 55
Q ss_pred CCCCCCcceeeecccc
Q 038705 346 VGQLPLLKHLFIIEMT 361 (861)
Q Consensus 346 l~~l~~L~~L~l~~~~ 361 (861)
+..+++|++|++++|+
T Consensus 292 ~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTTSCEEEEEECTTCT
T ss_pred HhhCCCCCEEeccCCC
Confidence 7777777777777764
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=2.1e-20 Score=215.98 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=58.7
Q ss_pred CCCCCccEEEEeecCCC----CCC-cCCC---------CCCcCCeeEEEEeCCCCCCCCC-CCC-CCCCcceeeeccccc
Q 038705 299 KPHRNLEELTIRGYGGT----TFP-TWMG---------DSSFANLVLLRFEGCHRCTSLP-SVG-QLPLLKHLFIIEMTS 362 (861)
Q Consensus 299 ~~~~~L~~L~l~~~~~~----~~p-~~~~---------~~~~~~L~~L~L~~~~~~~~~~-~l~-~l~~L~~L~l~~~~~ 362 (861)
..+++|+.|++.++... ..| .|-. ...+++|++|++++|.+.+..+ .+. .+++|++|++++|..
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 34678889988886421 111 1200 0136678888888876544332 232 467788888877754
Q ss_pred eeEECccccCCcCcCCCCCcceEeccccccccccccCCCCCcccccCccceEeccCC
Q 038705 363 VKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWIPHGSGKEVNVFPQLRELSLIGC 419 (861)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 419 (861)
+...+.... ...+++|++|+++++. +.+.....+......+++|++|++++|
T Consensus 143 ~~~~~l~~~----~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 143 FSTDGLAAI----AATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp EEHHHHHHH----HHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred CCHHHHHHH----HHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 432110000 0126677777776643 333221111110001556666666665
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=2.1e-17 Score=166.00 Aligned_cols=209 Identities=18% Similarity=0.161 Sum_probs=140.2
Q ss_pred CCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeecccc-CcccccccccCCCCCcEEeecc-CCCcee
Q 038705 582 CGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCE-NLIVLPDGLLKLNHLQEIFISH-CPNLIS 659 (861)
Q Consensus 582 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~L~~-~~~~~~ 659 (861)
|..++.+|. +|+++++|++++|...+..+..+.++++|++|++++|. +.+..+..|.++++|++|++++ | .+..
T Consensus 20 c~~l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~ 95 (239)
T 2xwt_C 20 CKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTY 95 (239)
T ss_dssp ECSCSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCE
T ss_pred ccCccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeE
Confidence 444666663 66678999998885544444477888899999999887 4444455788888999999988 5 4445
Q ss_pred cC-CCCCCcCCccEEEeccccCcccccccCCCCCccC---EEeecCCCCCcccCCCC--CCCCcc-EEEecCccCccccc
Q 038705 660 FP-DGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQ---ELEIGDLPSMVYFPEDG--FPTNLH-SLEIRDMKMWKSLI 732 (861)
Q Consensus 660 ~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~n~~l~~~~~~~--~~~~L~-~L~l~~~~~~~~~~ 732 (861)
++ ..+..+++|++|++++|.+.+ +|. +..+++|+ +|++++|+.++.++... .+++|+ +|++++|.+. .++
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~ 172 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ 172 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EEC
T ss_pred cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccC
Confidence 54 456678888889888887544 665 77777777 88888886677776543 366777 7777777765 333
Q ss_pred ccccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCCCCC-CCCCEEeccCCCCcccCCCC
Q 038705 733 EWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVGESL-PSLECLILDDCPKLRYFPDK 811 (861)
Q Consensus 733 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~-~~L~~L~l~~c~~l~~~~~~ 811 (861)
... +.. ++|+.|++++|+.++.++... ...+ ++|+.|+++++ .++.+|..
T Consensus 173 ~~~-~~~-~~L~~L~L~~n~~l~~i~~~~--------------------------~~~l~~~L~~L~l~~N-~l~~l~~~ 223 (239)
T 2xwt_C 173 GYA-FNG-TKLDAVYLNKNKYLTVIDKDA--------------------------FGGVYSGPSLLDVSQT-SVTALPSK 223 (239)
T ss_dssp TTT-TTT-CEEEEEECTTCTTCCEECTTT--------------------------TTTCSBCCSEEECTTC-CCCCCCCT
T ss_pred Hhh-cCC-CCCCEEEcCCCCCcccCCHHH--------------------------hhccccCCcEEECCCC-ccccCChh
Confidence 321 333 677777777775455554321 1344 67777777775 56666654
Q ss_pred CCccccceeeccCCcc
Q 038705 812 GLPPSLLQLHISNCPL 827 (861)
Q Consensus 812 ~~~~sL~~L~l~~c~~ 827 (861)
.+++|+.|+++++..
T Consensus 224 -~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 224 -GLEHLKELIARNTWT 238 (239)
T ss_dssp -TCTTCSEEECTTC--
T ss_pred -HhccCceeeccCccC
Confidence 456777777777654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.5e-17 Score=185.11 Aligned_cols=199 Identities=15% Similarity=0.086 Sum_probs=134.1
Q ss_pred ccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCc
Q 038705 520 SLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALK 599 (861)
Q Consensus 520 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 599 (861)
.+++|+.|++++| .+..++...+..+++|++|++++|. ++...+ .+.++ +|+
T Consensus 32 ~~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~------------------------l~~l~-~L~ 83 (487)
T 3oja_A 32 SAWNVKELDLSGN--PLSQISAADLAPFTKLELLNLSSNV-LYETLD------------------------LESLS-TLR 83 (487)
T ss_dssp TGGGCCEEECCSS--CCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE------------------------CTTCT-TCC
T ss_pred cCCCccEEEeeCC--cCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc------------------------cccCC-CCC
Confidence 3458999999999 5555666666888999999999984 333111 12223 577
Q ss_pred EEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEecccc
Q 038705 600 YLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECE 679 (861)
Q Consensus 600 ~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 679 (861)
+|++++|. ++.+|. .++|+.|++++|.+.+..+. .+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 84 ~L~Ls~N~-l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 84 TLDLNNNY-VQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp EEECCSSE-EEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred EEEecCCc-CCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence 77777773 333332 26777777777776665543 35677777777776665556666667777777877777
Q ss_pred CcccccccCC-CCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCccccC
Q 038705 680 KLKALPNGMH-NLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMVSFP 758 (861)
Q Consensus 680 ~~~~~~~~l~-~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 758 (861)
+.+..|..+. .+++|+.|++++| .+..++...++++|+.|++++|.+.+..+. +..+++|+.|++++|.. ..+|
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~N~l-~~lp 230 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKL-VLIE 230 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCC-CEEC
T ss_pred CCCcChHHHhhhCCcccEEecCCC-ccccccccccCCCCCEEECCCCCCCCCCHh---HcCCCCccEEEecCCcC-cccc
Confidence 7666666664 6777888888877 455666566677888888888777654332 66778888888888743 3444
Q ss_pred C
Q 038705 759 Q 759 (861)
Q Consensus 759 ~ 759 (861)
.
T Consensus 231 ~ 231 (487)
T 3oja_A 231 K 231 (487)
T ss_dssp T
T ss_pred h
Confidence 4
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=4.2e-17 Score=163.81 Aligned_cols=205 Identities=17% Similarity=0.178 Sum_probs=118.8
Q ss_pred cCCCCCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCC
Q 038705 492 QQPVFPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELP 571 (861)
Q Consensus 492 ~~~~~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 571 (861)
.+|.+|+++++|++++|.+.+..+..|..+++|++|++++| ..+..++...+..+++|++|++++|..++.+.+..
T Consensus 25 ~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~--- 100 (239)
T 2xwt_C 25 RIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA--- 100 (239)
T ss_dssp SCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS---
T ss_pred ccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH---
Confidence 33445568889999998888777778888888899998888 22556666555667777777777622333311100
Q ss_pred CCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCcc---EEeeccc-cCcccccccccCCCCCc
Q 038705 572 ATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLE---AVKISYC-ENLIVLPDGLLKLNHLQ 647 (861)
Q Consensus 572 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~---~L~L~~~-~~~~~~~~~~~~l~~L~ 647 (861)
...++ +|++|++++|. ++.+|. +..+++|+ +|++++| .+.+..+..|.++++|+
T Consensus 101 -------------------f~~l~-~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 101 -------------------LKELP-LLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp -------------------EECCT-TCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred -------------------hCCCC-CCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 11222 46666666663 333554 55555555 6666666 44443344566666666
Q ss_pred -EEeeccCCCceecCCCCCCcCCccEEEecccc-CcccccccCCCC-CccCEEeecCCCCCcccCCCCCCCCccEEEecC
Q 038705 648 -EIFISHCPNLISFPDGGFLSSTLTKLWIYECE-KLKALPNGMHNL-TSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRD 724 (861)
Q Consensus 648 -~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~ 724 (861)
+|++++|.. ..+|...+..++|++|++++|+ +....+..+..+ ++|++|++++| .++.+|.. .+++|+.|++++
T Consensus 159 ~~L~l~~n~l-~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~ 235 (239)
T 2xwt_C 159 LTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARN 235 (239)
T ss_dssp EEEECCSCCC-CEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTT
T ss_pred eEEEcCCCCC-cccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccC
Confidence 666666643 3555544433566666666664 332223445556 66666666665 34444433 344555555544
Q ss_pred c
Q 038705 725 M 725 (861)
Q Consensus 725 ~ 725 (861)
+
T Consensus 236 ~ 236 (239)
T 2xwt_C 236 T 236 (239)
T ss_dssp C
T ss_pred c
Confidence 3
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=4.3e-17 Score=167.80 Aligned_cols=203 Identities=20% Similarity=0.152 Sum_probs=143.4
Q ss_pred CCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccE
Q 038705 593 NLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTK 672 (861)
Q Consensus 593 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 672 (861)
.+|+++++|++++|...+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 45667999999999655555557888999999999999887777778888999999999999766666677788899999
Q ss_pred EEeccccCcccccccCCCCCccCEEeecCCCCCcc--cCCC-CCCCCccEEEecCccCcccccccccCCcCCCcC----e
Q 038705 673 LWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVY--FPED-GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLR----R 745 (861)
Q Consensus 673 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~--~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~----~ 745 (861)
|++++|.+.+..+..+..+++|++|++++|. ++. +|.. ..+++|++|++++|.+....+.. +..+++|+ .
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~l~l~ 181 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLS 181 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG--GHHHHTCTTCCEE
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHH--hhhhhhcccccee
Confidence 9999988766666678889999999999984 544 3332 44688999999998887654433 55556666 7
Q ss_pred EEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCC-CCCCCCCEEeccCCC
Q 038705 746 LSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVG-ESLPSLECLILDDCP 803 (861)
Q Consensus 746 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~ 803 (861)
|++++|+ +..++.... ...+|+.|++.++. ++.++... ..+++|+.|++++++
T Consensus 182 L~ls~n~-l~~~~~~~~---~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 182 LDLSLNP-MNFIQPGAF---KEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSC-CCEECTTSS---CSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eecCCCc-ccccCcccc---CCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 8888874 344443321 12356666665543 44433322 455666666666553
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=2.1e-17 Score=170.09 Aligned_cols=206 Identities=16% Similarity=0.107 Sum_probs=110.4
Q ss_pred CCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcc
Q 038705 496 FPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLE 575 (861)
Q Consensus 496 ~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 575 (861)
+|++|++|++++|.+.+..+..+.++++|++|++++| .+..++...+..+++|++|++++|.
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~---------------- 87 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNP---------------- 87 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC--CCCEECTTTTTTCTTCCEEECTTCC----------------
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC--cCCccCHHHccCCcCCCEEECCCCc----------------
Confidence 4567888888888887776667888888888888888 4445555444556666666666652
Q ss_pred EEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCC
Q 038705 576 HLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCP 655 (861)
Q Consensus 576 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 655 (861)
..+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 88 --------------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 88 --------------------------------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp --------------------------------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred --------------------------------cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc
Confidence 222222333344444444444444433333334444445555554443
Q ss_pred Cce-ecCCCCCCcCCccEEEeccccCcccccccCCCCCccC----EEeecCCCCCcccCCCCC-CCCccEEEecCccCcc
Q 038705 656 NLI-SFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQ----ELEIGDLPSMVYFPEDGF-PTNLHSLEIRDMKMWK 729 (861)
Q Consensus 656 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~n~~l~~~~~~~~-~~~L~~L~l~~~~~~~ 729 (861)
... .+|..+..+++|++|++++|.+.+..+..+..+++|+ +|++++| .+..++...+ ..+|++|++++|.+..
T Consensus 136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQLKS 214 (276)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSCCSC
T ss_pred cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCceee
Confidence 222 1344444444555555555444333333333333333 5556555 3444433322 3356666666666544
Q ss_pred cccccccCCcCCCcCeEEeecCCCc
Q 038705 730 SLIEWEPLNRFTSLRRLSIHGCQDM 754 (861)
Q Consensus 730 ~~~~~~~~~~l~~L~~L~l~~~~~~ 754 (861)
..+.. +..+++|+.|++++|+..
T Consensus 215 ~~~~~--~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 215 VPDGI--FDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCTTT--TTTCCSCCEEECCSSCBC
T ss_pred cCHhH--hcccccccEEEccCCccc
Confidence 33322 566777777777776543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=3.4e-16 Score=160.20 Aligned_cols=177 Identities=17% Similarity=0.171 Sum_probs=90.2
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
++++|++++|.+.+..+..|..+++|++|++++| .+..++...+..+++|++|++++|.
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~i~~~~~~~l~~L~~L~l~~n~------------------- 96 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN--KLQTLPAGIFKELKNLETLWVTDNK------------------- 96 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS--CCSCCCTTTTSSCTTCCEEECCSSC-------------------
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC--ccCeeChhhhcCCCCCCEEECCCCc-------------------
Confidence 5666777776666555556677777777777776 3445555444555555555555552
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCce
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLI 658 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 658 (861)
..+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|...
T Consensus 97 -----------------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~- 146 (270)
T 2o6q_A 97 -----------------------------LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ- 146 (270)
T ss_dssp -----------------------------CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred -----------------------------CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-
Confidence 11111122334444555555544444444444445555555555555322
Q ss_pred ecCC-CCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCC--CCCCccEEEecCccC
Q 038705 659 SFPD-GGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDG--FPTNLHSLEIRDMKM 727 (861)
Q Consensus 659 ~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~--~~~~L~~L~l~~~~~ 727 (861)
.+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++| .++.++... .+++|+.|++++|++
T Consensus 147 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 2222 2334555555555555544333334555555555555555 344444332 245555555555554
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=1.3e-16 Score=163.59 Aligned_cols=202 Identities=16% Similarity=0.075 Sum_probs=120.2
Q ss_pred hhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCccc
Q 038705 518 LLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKA 597 (861)
Q Consensus 518 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 597 (861)
...+++|+.|++++| .+..++. +..+++|++|++++|. ++. ++..+.++ +
T Consensus 37 ~~~l~~L~~L~l~~~--~i~~~~~--l~~l~~L~~L~l~~n~-l~~------------------------~~~l~~l~-~ 86 (272)
T 3rfs_A 37 QNELNSIDQIIANNS--DIKSVQG--IQYLPNVRYLALGGNK-LHD------------------------ISALKELT-N 86 (272)
T ss_dssp HHHHTTCCEEECTTS--CCCCCTT--GGGCTTCCEEECTTSC-CCC------------------------CGGGTTCT-T
T ss_pred cccccceeeeeeCCC--Ccccccc--cccCCCCcEEECCCCC-CCC------------------------chhhcCCC-C
Confidence 445667777777776 2333332 2456666666666662 221 11122233 5
Q ss_pred CcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEecc
Q 038705 598 LKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYE 677 (861)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 677 (861)
|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|+.|++++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 166 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence 67777777644443444456677777777777776665566667777777777777744433333345667777777777
Q ss_pred ccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCcc
Q 038705 678 CEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMV 755 (861)
Q Consensus 678 ~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 755 (861)
|.+.+..+..+..+++|++|++++| .+..++.. ..+++|+.|++++|++. ..+++|+.++++.|...+
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 167 NQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHTGG
T ss_pred CCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhCCC
Confidence 7655555555667777777777777 34444443 33667777777777552 345567777777766666
Q ss_pred ccCC
Q 038705 756 SFPQ 759 (861)
Q Consensus 756 ~~~~ 759 (861)
.+|.
T Consensus 237 ~ip~ 240 (272)
T 3rfs_A 237 VVRN 240 (272)
T ss_dssp GBBC
T ss_pred cccC
Confidence 6654
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=4.7e-16 Score=160.45 Aligned_cols=176 Identities=17% Similarity=0.114 Sum_probs=100.5
Q ss_pred CcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 498 CSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
++++.|++++|.+.+..+..+..+++|++|++++| .+..++.. ..++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~--~~l~----------------------------- 77 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA--ELTKLQVD--GTLP----------------------------- 77 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS--CCCEEECC--SCCT-----------------------------
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC--ccCcccCC--CCCC-----------------------------
Confidence 36777777777776666667777777777777777 23333322 2333
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCc
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNL 657 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 657 (861)
+|++|++++| .++.+|..+..+++|++|++++|.+.+..+..|..+++|++|++++|...
T Consensus 78 -------------------~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 78 -------------------VLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp -------------------TCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred -------------------cCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 3555555555 23344555556666666666666666555566666677777777776433
Q ss_pred eecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCC-CCCccEEEecCccC
Q 038705 658 ISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGF-PTNLHSLEIRDMKM 727 (861)
Q Consensus 658 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~-~~~L~~L~l~~~~~ 727 (861)
...+..+..+++|+.|++++|++....+..+..+++|++|++++| .++.+|...+ .++|+.|++++|++
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 332333345666666666666644333334566666666666666 4555554422 34455555555544
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=1.1e-15 Score=157.67 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=79.7
Q ss_pred cCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEec
Q 038705 597 ALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIY 676 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 676 (861)
.++.|++++|...+..+..+..+++|++|++++|.+.+..+. ..+++|++|++++| .+..+|..+..+++|+.|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence 455555555544333444555555555555555554432221 44555666666555 233455555555556666665
Q ss_pred cccCcccccccCCCCCccCEEeecCCCCCcccCCCC--CCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCc
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDG--FPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDM 754 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 754 (861)
+|.+.+..+..+.++++|++|++++| .++.++... .+++|+.|++++|++....+.. +..+++|+.|++++|+ +
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~l~~L~~L~L~~N~-l 184 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLENLDTLLLQENS-L 184 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTT--TTTCTTCCEEECCSSC-C
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCHHH--hcCcCCCCEEECCCCc-C
Confidence 55544444445555556666666555 344444432 2455566666555554332221 4555566666665552 3
Q ss_pred cccCC
Q 038705 755 VSFPQ 759 (861)
Q Consensus 755 ~~~~~ 759 (861)
..+|.
T Consensus 185 ~~ip~ 189 (290)
T 1p9a_G 185 YTIPK 189 (290)
T ss_dssp CCCCT
T ss_pred CccCh
Confidence 34443
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=9.2e-16 Score=157.02 Aligned_cols=154 Identities=17% Similarity=0.068 Sum_probs=114.7
Q ss_pred cCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEec
Q 038705 597 ALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIY 676 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 676 (861)
+|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 141 (270)
T 2o6q_A 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECC
Confidence 57777777664333223345678899999999988777666777888999999999986555555556778899999999
Q ss_pred cccCcccccccCCCCCccCEEeecCCCCCcccCCCC--CCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCC
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDG--FPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 753 (861)
+|.+.+..+..+..+++|++|++++| .+..++... .+++|++|++++|++....+.. +..+++|+.|++++|+.
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 142 YNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA--FDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCB
T ss_pred CCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHH--hccccCCCEEEecCCCe
Confidence 88866555555788899999999888 566666543 3688999999988876544433 77888899999988864
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=164.42 Aligned_cols=226 Identities=15% Similarity=0.090 Sum_probs=137.2
Q ss_pred CcEEeeccccCcch-hhh--hccCCCCccEEeeccccCcccccccc--cCCCCCcEEeeccCCCceecC----CCCCCcC
Q 038705 598 LKYLSVDHCLKLKS-LAE--RLDNNSSLEAVKISYCENLIVLPDGL--LKLNHLQEIFISHCPNLISFP----DGGFLSS 668 (861)
Q Consensus 598 L~~L~l~~~~~l~~-~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~----~~~~~~~ 668 (861)
++.+.+.++..... +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|......+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 56666666643321 111 11134568888888888777777776 778888888888886554333 1223567
Q ss_pred CccEEEeccccCcccccccCCCCCccCEEeecCCCCCcc--cCCC---CCCCCccEEEecCccCccccccc-ccCCcCCC
Q 038705 669 TLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVY--FPED---GFPTNLHSLEIRDMKMWKSLIEW-EPLNRFTS 742 (861)
Q Consensus 669 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~--~~~~---~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~ 742 (861)
+|++|++++|.+.+..+..++.+++|++|++++|+.... ++.. ..+++|++|++++|.+....... ..+..+++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ 225 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence 888888888887666667778888888888888854331 2111 34677888888888775321110 01456788
Q ss_pred cCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCCCCCCCCCEEeccCCCCcccCCCCCCccccceeec
Q 038705 743 LRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVGESLPSLECLILDDCPKLRYFPDKGLPPSLLQLHI 822 (861)
Q Consensus 743 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l 822 (861)
|++|++++|......|........+++|+.|++.++ .++.++.. -+++|+.|++++| +++.+|....+++|++|++
T Consensus 226 L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~--~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 226 PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKG--LPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTL 301 (310)
T ss_dssp CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSC--CCSCCSCEECCSC-CCCSCCCTTSCCCCSCEEC
T ss_pred CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhh--hcCCCCEEECCCC-cCCCCchhhhCCCccEEEC
Confidence 888888888654444544332222356666666554 23333321 1256777777766 4555554444566777777
Q ss_pred cCCcc
Q 038705 823 SNCPL 827 (861)
Q Consensus 823 ~~c~~ 827 (861)
++|+.
T Consensus 302 ~~N~l 306 (310)
T 4glp_A 302 DGNPF 306 (310)
T ss_dssp SSTTT
T ss_pred cCCCC
Confidence 77663
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=5.1e-16 Score=159.01 Aligned_cols=207 Identities=17% Similarity=0.043 Sum_probs=162.5
Q ss_pred CcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 498 CSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
++|+.|++++|.+... ..+..+++|++|++++|. +..++ .+..+++|++|++++|. ++.+.+..
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~--l~~~~--~l~~l~~L~~L~L~~n~-l~~~~~~~--------- 104 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNK--LHDIS--ALKELTNLTYLILTGNQ-LQSLPNGV--------- 104 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSC--CCCCG--GGTTCTTCCEEECTTSC-CCCCCTTT---------
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCC--CCCch--hhcCCCCCCEEECCCCc-cCccChhH---------
Confidence 4899999999987643 368899999999999993 44444 34778999999999983 33311110
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCc
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNL 657 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 657 (861)
.+.++ +|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|...
T Consensus 105 -------------~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 105 -------------FDKLT-NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp -------------TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------hcCCc-CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 12233 6999999999665555566889999999999999988777777889999999999999655
Q ss_pred eecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccC
Q 038705 658 ISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPL 737 (861)
Q Consensus 658 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 737 (861)
...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+.. +.+++|+.++++.|.+.+.+|.. +
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~--~ 242 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS--A 242 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCT--T
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCc--c
Confidence 544445677899999999999988777777899999999999999643 34678999999999999888875 5
Q ss_pred CcCCC
Q 038705 738 NRFTS 742 (861)
Q Consensus 738 ~~l~~ 742 (861)
+.++.
T Consensus 243 ~~~~~ 247 (272)
T 3rfs_A 243 GSVAP 247 (272)
T ss_dssp SCBCG
T ss_pred cccCC
Confidence 55544
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=164.96 Aligned_cols=227 Identities=14% Similarity=0.111 Sum_probs=160.2
Q ss_pred cccEEEeecccccccchh---hhhccccccEEEEecccccccccccccc-cCCCCccEEEecCCCCccccCCCCCCCCCc
Q 038705 499 SLQYLELSQCRYLVKLPQ---ALLSLGFLREMEIYGNLIKEESIQSSST-RYTSLLEYLYIDDCASLTSLLPKNELPATL 574 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 574 (861)
.++.+.+.++.+...... .+..+++|++|++++|.. ....+...+ ..+++|++|++++|. ++...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~--------- 133 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVS-WATGR--------- 133 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCC-CSSTT---------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeeccc-ccchh---------
Confidence 678888888876532211 233457799999999932 223343333 667889999998884 22100
Q ss_pred cEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCccc--c--cccccCCCCCcEEe
Q 038705 575 EHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIV--L--PDGLLKLNHLQEIF 650 (861)
Q Consensus 575 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~--~--~~~~~~l~~L~~L~ 650 (861)
+.+.... ....+ +|++|++++|......+..+..+++|++|++++|.+.+. + +..+..+++|++|+
T Consensus 134 --------~~~~~~~-~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 134 --------SWLAELQ-QWLKP-GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp --------SSHHHHH-TTBCS-CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred --------hhhHHHH-hhhcc-CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence 0011111 12233 799999999977666677888999999999999987653 2 23346789999999
Q ss_pred eccCCCceecCCC----CCCcCCccEEEeccccCcccccccCCCC---CccCEEeecCCCCCcccCCCCCCCCccEEEec
Q 038705 651 ISHCPNLISFPDG----GFLSSTLTKLWIYECEKLKALPNGMHNL---TSLQELEIGDLPSMVYFPEDGFPTNLHSLEIR 723 (861)
Q Consensus 651 L~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~ 723 (861)
+++|.. +.++.. +..+++|++|++++|.+.+..|..+..+ ++|++|++++| .++.+|... +++|++|+++
T Consensus 204 Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls 280 (310)
T 4glp_A 204 LRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLS 280 (310)
T ss_dssp CCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECC
T ss_pred CCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECC
Confidence 999954 444331 2456899999999999877778777666 69999999999 566777653 4899999999
Q ss_pred CccCcccccccccCCcCCCcCeEEeecCCC
Q 038705 724 DMKMWKSLIEWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 753 (861)
+|++.+. +. +..+++|+.|++++|+.
T Consensus 281 ~N~l~~~-~~---~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 281 SNRLNRA-PQ---PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCCCSC-CC---TTSCCCCSCEECSSTTT
T ss_pred CCcCCCC-ch---hhhCCCccEEECcCCCC
Confidence 9998754 22 67889999999999864
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.4e-15 Score=162.06 Aligned_cols=226 Identities=20% Similarity=0.223 Sum_probs=155.2
Q ss_pred CCCcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCcc
Q 038705 496 FPCSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLE 575 (861)
Q Consensus 496 ~p~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~ 575 (861)
+|+++++|+|++|.+....+.+|.++++|++|++++| .....++..++..+++++++...++..++.+.+..
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~------- 99 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA------- 99 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS-------
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccCCcccccCchh-------
Confidence 4568888888888887665567888888888888888 33355666666677776665544433444422211
Q ss_pred EEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCccccc-ccccCC-CCCcEEeecc
Q 038705 576 HLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLP-DGLLKL-NHLQEIFISH 653 (861)
Q Consensus 576 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l-~~L~~L~L~~ 653 (861)
...++ +|++|++++|......+..+....++..|++.++..++.++ ..|..+ ..++.|++++
T Consensus 100 ---------------f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 100 ---------------FQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp ---------------BCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred ---------------hhhcc-ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 12233 57777777774433333344566677788887765555554 345554 3578888888
Q ss_pred CCCceecCCCCCCcCCccEEEeccccCcccccc-cCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCccccc
Q 038705 654 CPNLISFPDGGFLSSTLTKLWIYECEKLKALPN-GMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLI 732 (861)
Q Consensus 654 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~ 732 (861)
| .++.+|...+..++|+++++.+++.++.+|. .|.++++|++|++++| .++.+|... +.+|+.|.+.++...+.+|
T Consensus 164 N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~-~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 164 N-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG-LENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp S-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS-CTTCCEEECTTCTTCCCCC
T ss_pred c-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh-hccchHhhhccCCCcCcCC
Confidence 8 4556777666777888888887777777765 4688888888888888 677777643 5788888888888877777
Q ss_pred ccccCCcCCCcCeEEeecC
Q 038705 733 EWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 733 ~~~~~~~l~~L~~L~l~~~ 751 (861)
. +..+++|+.+++.++
T Consensus 241 ~---l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 T---LEKLVALMEASLTYP 256 (350)
T ss_dssp C---TTTCCSCCEEECSCH
T ss_pred C---chhCcChhhCcCCCC
Confidence 5 778888888888663
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=2.8e-15 Score=159.65 Aligned_cols=220 Identities=19% Similarity=0.151 Sum_probs=104.6
Q ss_pred cccCcEEeeccccCcchhhh-hccCCCCccEEeeccccCcccccc-cccCCCCCcEEeeccCCCceec-CCCCCCcCCcc
Q 038705 595 PKALKYLSVDHCLKLKSLAE-RLDNNSSLEAVKISYCENLIVLPD-GLLKLNHLQEIFISHCPNLISF-PDGGFLSSTLT 671 (861)
Q Consensus 595 ~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~L~ 671 (861)
|+++++|++++|. ++.+|. .|.++++|++|+|++|.+.+.+|. .|.+++++.++...++..+..+ |..+..+++|+
T Consensus 29 ~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 3455555555552 333433 345555555555555555554432 3445555544333222223333 33344455555
Q ss_pred EEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCC---CCCccEEEecCccCcccccccccCCcCCCcCeEEe
Q 038705 672 KLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGF---PTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSI 748 (861)
Q Consensus 672 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 748 (861)
+|++++|.+....+..+....++..|++.++..+..++...+ ...++.|++++|.+....+. +....+|+++++
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~---~f~~~~L~~l~l 184 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS---AFNGTQLDELNL 184 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT---SSTTEEEEEEEC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh---hccccchhHHhh
Confidence 555555554333333334444455555555545555544322 23455555555555432221 333445555555
Q ss_pred ecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCCCCCCCCCEEeccCCCCcccCCCCCCccccceeecc
Q 038705 749 HGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVGESLPSLECLILDDCPKLRYFPDKGLPPSLLQLHIS 823 (861)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~ 823 (861)
++|..++.+|.+..+ .+++|+.|++++. +++.++. ..+..|++|.+.+|..++.+|....+++|+.+++.
T Consensus 185 ~~~n~l~~i~~~~f~--~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 185 SDNNNLEELPNDVFH--GASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp TTCTTCCCCCTTTTT--TEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred ccCCcccCCCHHHhc--cCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 555555555543211 1244555555443 3444332 33455555555555555555554445555555554
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=3.8e-15 Score=150.54 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=132.1
Q ss_pred CcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEE
Q 038705 594 LPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKL 673 (861)
Q Consensus 594 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 673 (861)
+|+.++.|++++|...+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 44579999999997766667778899999999999999888888889999999999999996655545566778999999
Q ss_pred EeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecC
Q 038705 674 WIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 674 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 751 (861)
++++|.+.+..+..+..+++|++|++++| .++.++.. ..+++|++|++++|.+....+.. +..+++|+.|++++|
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA--FDRLGKLQTITLFGN 189 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCC
Confidence 99999876655666789999999999999 67777764 44789999999999988665544 889999999999999
Q ss_pred CCcc
Q 038705 752 QDMV 755 (861)
Q Consensus 752 ~~~~ 755 (861)
+...
T Consensus 190 ~~~c 193 (251)
T 3m19_A 190 QFDC 193 (251)
T ss_dssp CBCT
T ss_pred ceeC
Confidence 7543
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=2e-15 Score=157.39 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=96.4
Q ss_pred cCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEec
Q 038705 597 ALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIY 676 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 676 (861)
+|++|++++|. ++.++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|... .++. +..+++|+.|+++
T Consensus 86 ~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 86 KITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIG 159 (308)
T ss_dssp SCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECC
T ss_pred CCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEcc
Confidence 46666666664 33333 46667777777777776554 332 667777777777777433 3333 5566777788887
Q ss_pred cccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCC
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 753 (861)
+|.+.+ ++. +..+++|++|++++| .+..++....+++|++|++++|++....+ +..+++|+.|++++|+.
T Consensus 160 ~n~l~~-~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 160 NAQVSD-LTP-LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp SSCCCC-CGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEEE
T ss_pred CCcCCC-Chh-hcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCee
Confidence 776543 333 677788888888887 45555554557788888888887765442 77888899999988853
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=2.4e-15 Score=156.84 Aligned_cols=191 Identities=15% Similarity=0.149 Sum_probs=143.2
Q ss_pred CcccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEE
Q 038705 498 CSLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHL 577 (861)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 577 (861)
++|++|++++|.+.. ++ .+..+++|++|++++| .+..++. +..+++|++|++++|. ++.
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n--~i~~~~~--~~~l~~L~~L~L~~n~-l~~-------------- 99 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDN--QITDLAP--LKNLTKITELELSGNP-LKN-------------- 99 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSS--CCCCCGG--GTTCCSCCEEECCSCC-CSC--------------
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCC--cCCCChh--HccCCCCCEEEccCCc-CCC--------------
Confidence 478888888887764 33 5778888888888888 4444554 4677888888888873 322
Q ss_pred EEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCc
Q 038705 578 HVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNL 657 (861)
Q Consensus 578 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 657 (861)
++....++ +|++|++++|. ++.++. +..+++|++|++++|.+.+..+ +..+++|++|++++|..
T Consensus 100 ----------~~~~~~l~-~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l- 163 (308)
T 1h6u_A 100 ----------VSAIAGLQ-SIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV- 163 (308)
T ss_dssp ----------CGGGTTCT-TCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC-
T ss_pred ----------chhhcCCC-CCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC-
Confidence 12223344 69999999985 444554 8889999999999998766443 78899999999999954
Q ss_pred eecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcc
Q 038705 658 ISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWK 729 (861)
Q Consensus 658 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~ 729 (861)
..++. +..+++|+.|++++|.+.+. +. +..+++|++|++++| .+..++....+++|+.|++++|++..
T Consensus 164 ~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 164 SDLTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred CCChh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCeeec
Confidence 44544 67789999999999986543 33 788999999999999 56666655678999999999998754
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=7.2e-17 Score=171.64 Aligned_cols=31 Identities=16% Similarity=0.028 Sum_probs=20.7
Q ss_pred cccEEEeecccccccchhhhhcc--ccccEEEEecc
Q 038705 499 SLQYLELSQCRYLVKLPQALLSL--GFLREMEIYGN 532 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~ 532 (861)
.++.++++++.+. +..+..+ ++++.|++++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n 80 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS 80 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCc
Confidence 4677777777654 3445555 67777777777
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=2.1e-17 Score=175.74 Aligned_cols=256 Identities=15% Similarity=0.046 Sum_probs=156.9
Q ss_pred CccEEeecccccCcCCcccchhhhhhccCCC--CcccEEEccCccccccCcccCCCCccceeeccCCcccc--cchhhhc
Q 038705 89 RLRTFLPLVLSNTWSGKAYLAHSVLYMLFKL--QRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKT--LPESVNK 164 (861)
Q Consensus 89 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~--lp~~i~~ 164 (861)
.++.+.+.+.. .. +..+..+ +++++|++++|.+...+..+..+++|++|++++|.++. +|..++.
T Consensus 48 ~~~~l~l~~~~--------~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDLTGKN--------LH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp TSSEEECTTCB--------CC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred hheeecccccc--------CC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh
Confidence 47777765422 11 2235566 78999999999998876677889999999999998873 7888999
Q ss_pred cccccEEecCCccchhhchhhhhhccccceeecCCC-cccc-cCccccccccccccccceEecccCCCCccccccccccc
Q 038705 165 LWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNV-KALE-EMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQ 242 (861)
Q Consensus 165 L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~-~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~ 242 (861)
+++|++|++++|.+....|..++.+++|++|++++| .+.+ .++..++++++|++|++..+.
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~----------------- 179 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF----------------- 179 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----------------
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-----------------
Confidence 999999999999777788888999999999999998 4332 255556677777766433220
Q ss_pred ceeeecCccCCCChhHHHHHhhhccc-CcchhheeeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCC--CCCCc
Q 038705 243 GTLDISKLENVKDASEAKEAQLIEKR-NLLRLLLEWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGG--TTFPT 319 (861)
Q Consensus 243 ~~l~~~~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~p~ 319 (861)
. +. .......+..++ +|++|++++|.. .. ..+|.
T Consensus 180 ------~---l~--~~~~~~~~~~l~~~L~~L~l~~~~~--------------------------------~~~~~~l~~ 216 (336)
T 2ast_B 180 ------D---FT--EKHVQVAVAHVSETITQLNLSGYRK--------------------------------NLQKSDLST 216 (336)
T ss_dssp ------T---CC--HHHHHHHHHHSCTTCCEEECCSCGG--------------------------------GSCHHHHHH
T ss_pred ------C---cC--hHHHHHHHHhcccCCCEEEeCCCcc--------------------------------cCCHHHHHH
Confidence 0 00 011222234444 455555444310 11 11222
Q ss_pred CCCCCCcCCeeEEEEeCCC-CCCC-CCCCCCCCCcceeeeccccceeEECccccCCcCcCCCCCcceEeccccccccccc
Q 038705 320 WMGDSSFANLVLLRFEGCH-RCTS-LPSVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCSVPFPSLETLCFQDIQEWEGWI 397 (861)
Q Consensus 320 ~~~~~~~~~L~~L~L~~~~-~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 397 (861)
.+ ..+++|+.|++++|. +.+. ++.++.+++|+.|++++|..+....... ...+++|++|+++++ +..
T Consensus 217 ~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----l~~~~~L~~L~l~~~--i~~-- 285 (336)
T 2ast_B 217 LV--RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE-----LGEIPTLKTLQVFGI--VPD-- 285 (336)
T ss_dssp HH--HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG-----GGGCTTCCEEECTTS--SCT--
T ss_pred HH--hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH-----HhcCCCCCEEeccCc--cCH--
Confidence 22 125666777777666 3322 3356667777777777775222111101 123777888887775 221
Q ss_pred cCCCCCccccc-CccceEeccCCCCCcCCCCCCCCC
Q 038705 398 PHGSGKEVNVF-PQLRELSLIGCPKLQGRLPECLSS 432 (861)
Q Consensus 398 ~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~p~~l~~ 432 (861)
..+.. + ..+..|++++ +.+++..|..+.+
T Consensus 286 -~~~~~----l~~~l~~L~l~~-n~l~~~~~~~~~~ 315 (336)
T 2ast_B 286 -GTLQL----LKEALPHLQINC-SHFTTIARPTIGN 315 (336)
T ss_dssp -TCHHH----HHHHSTTSEESC-CCSCCTTCSSCSS
T ss_pred -HHHHH----HHhhCcceEEec-ccCccccCCcccc
Confidence 11111 2 3466777765 6788777765543
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.9e-14 Score=145.47 Aligned_cols=151 Identities=15% Similarity=0.060 Sum_probs=126.9
Q ss_pred cCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEec
Q 038705 597 ALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIY 676 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 676 (861)
..+.++++++ .++.+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 5778888887 5677777665 689999999999988888889999999999999997666666667789999999999
Q ss_pred cccCcccccccCCCCCccCEEeecCCCCCcccCCCC--CCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCC
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDG--FPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 753 (861)
+|.+.+..+..+..+++|++|++++| .++.++... .+++|++|++++|.+....+.. +..+++|+.|++++|..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA--FDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHH--cCcCcCCCEEECCCCcC
Confidence 99977766777899999999999999 677777653 4789999999999887655533 88899999999999843
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=1.5e-16 Score=172.55 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=81.4
Q ss_pred hhhcccCCccEEeecccccCcCCcccchhh----hhhccCCCCcccEEEccCccccc----cCcc-------cCCCCccc
Q 038705 82 EVLSDAKRLRTFLPLVLSNTWSGKAYLAHS----VLYMLFKLQRLRVLSLRGYSIFH----VPSS-------IGDLKHLQ 146 (861)
Q Consensus 82 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~~----lp~~-------~~~L~~L~ 146 (861)
..+..+++|++|.+.++. +... ++..|..+++|++|+|++|.+.. +|.. +..+++|+
T Consensus 26 ~~l~~~~~L~~L~L~~n~--------i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNT--------IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp HHHHHCSCCCEEECTTSE--------ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHhcCCCccEEECCCCC--------CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 445667778888775533 2222 33337778888888888765442 2333 36778888
Q ss_pred eeeccCCcccc-----cchhhhccccccEEecCCccchhhchh----hhhhc---------cccceeecCCCccc-ccCc
Q 038705 147 YLDLSETKIKT-----LPESVNKLWNLHTLLLENCHRLKKLCA----NMGSL---------IKLHHLKNSNVKAL-EEMP 207 (861)
Q Consensus 147 ~L~Ls~~~i~~-----lp~~i~~L~~L~~L~l~~n~~~~~lp~----~~~~L---------~~L~~L~l~~~~~~-~~~p 207 (861)
+|+|++|.++. +|..++++++|++|++++|.+....+. .+..+ ++|++|++++|.+. ..+|
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 88888887775 667777888888888888765433333 33344 77888888877743 2333
Q ss_pred ---ccccccccccccc
Q 038705 208 ---KGIGNLTHLLTLS 220 (861)
Q Consensus 208 ---~~i~~l~~L~~L~ 220 (861)
..+..+++|++|+
T Consensus 178 ~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHHHCTTCCEEE
T ss_pred HHHHHHHhCCCcCEEE
Confidence 2344555555553
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=7.6e-16 Score=166.91 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=88.7
Q ss_pred CceeEEEEEecCCCccch---hhhhcccCCccEEeecccccCcCCcccchhhhhhc-------cCCCCcccEEEccCccc
Q 038705 63 ENLRHFSYLRGGYDGLKM---FEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYM-------LFKLQRLRVLSLRGYSI 132 (861)
Q Consensus 63 ~~~~~lsl~~~~~~~~~~---~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-------~~~l~~L~~L~L~~~~i 132 (861)
..+++|.+.++.+..... ...+..+++|++|.+.++.. +.+...+|.. |..+++|++|+|++|.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~-----~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-----GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT-----TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc-----CccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 446777777665543211 12255677777777655321 1122222322 46777777777777777
Q ss_pred cc-----cCcccCCCCccceeeccCCcccc-----cchhhhcc---------ccccEEecCCccch-hhch---hhhhhc
Q 038705 133 FH-----VPSSIGDLKHLQYLDLSETKIKT-----LPESVNKL---------WNLHTLLLENCHRL-KKLC---ANMGSL 189 (861)
Q Consensus 133 ~~-----lp~~~~~L~~L~~L~Ls~~~i~~-----lp~~i~~L---------~~L~~L~l~~n~~~-~~lp---~~~~~L 189 (861)
+. +|..+..+++|++|+|++|.++. ++..+..+ ++|++|++++|.+. ..+| ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 65 56667777777777777777652 23334444 67777777777544 3344 356677
Q ss_pred cccceeecCCCcccc-----cCcccccccccccccc
Q 038705 190 IKLHHLKNSNVKALE-----EMPKGIGNLTHLLTLS 220 (861)
Q Consensus 190 ~~L~~L~l~~~~~~~-----~~p~~i~~l~~L~~L~ 220 (861)
++|++|++++|.+.. ..|..+..+++|+.|+
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~ 222 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEE
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEE
Confidence 777777777776321 2222455566666553
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=7.2e-16 Score=165.21 Aligned_cols=231 Identities=11% Similarity=-0.016 Sum_probs=116.3
Q ss_pred CcccEEEeecccccccch----hhhhccc-cccEEEEecccccccccccccccC-----CCCccEEEecCCCCccccCCC
Q 038705 498 CSLQYLELSQCRYLVKLP----QALLSLG-FLREMEIYGNLIKEESIQSSSTRY-----TSLLEYLYIDDCASLTSLLPK 567 (861)
Q Consensus 498 ~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~l~~~~~~ 567 (861)
++|++|++++|.+.+..+ ..+..++ +|++|++++|.+ .......+.. .++|++|++++|. ++...+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~ 98 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD 98 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence 457777777777665554 5566666 677777777722 2221111111 2566666666663 2220000
Q ss_pred CCCCCCccEEEEecCCCccccc-ccCCCcccCcEEeeccccCcchhhhh----ccC-CCCccEEeeccccCcc----ccc
Q 038705 568 NELPATLEHLHVKSCGNLAFLS-LVGNLPKALKYLSVDHCLKLKSLAER----LDN-NSSLEAVKISYCENLI----VLP 637 (861)
Q Consensus 568 ~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~-l~~L~~L~L~~~~~~~----~~~ 637 (861)
.+. .....+++|++|++++|......+.. +.. .++|++|++++|.+.. .++
T Consensus 99 -------------------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 99 -------------------ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp -------------------HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred -------------------HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 000 01112235677777776543333322 223 2467777777766553 233
Q ss_pred ccccCCC-CCcEEeeccCCCceecCCC----CCCc-CCccEEEeccccCccc----ccccCCC-CCccCEEeecCCCCCc
Q 038705 638 DGLLKLN-HLQEIFISHCPNLISFPDG----GFLS-STLTKLWIYECEKLKA----LPNGMHN-LTSLQELEIGDLPSMV 706 (861)
Q Consensus 638 ~~~~~l~-~L~~L~L~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~l~~-l~~L~~L~l~~n~~l~ 706 (861)
..+..++ +|++|++++|......+.. +..+ ++|++|++++|.+... ++..+.. .++|++|++++| .++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~ 238 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLH 238 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCC
Confidence 3444444 6777777776433322211 1122 3677777777664432 3333433 346777777776 343
Q ss_pred ccCC------CCCCCCccEEEecCccCcc-------cccccccCCcCCCcCeEEeecCCC
Q 038705 707 YFPE------DGFPTNLHSLEIRDMKMWK-------SLIEWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 707 ~~~~------~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~l~~L~~L~l~~~~~ 753 (861)
..+. ...+++|++|++++|.+.. .+... +..+++|+.|++++|+.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~--~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA--FPNIQKIILVDKNGKEI 296 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT--STTCCEEEEECTTSCBC
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH--hccCCceEEEecCCCcC
Confidence 3222 1234667777777776221 11112 55666777777777753
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.3e-14 Score=138.76 Aligned_cols=148 Identities=13% Similarity=0.101 Sum_probs=122.1
Q ss_pred cCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEec
Q 038705 597 ALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIY 676 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 676 (861)
+|++|++++|. +..+| .+..+++|++|++++|.+ .. +..+..+++|++|++++|......+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n~~-~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANIN-VTDLT-GIEYAHNIKDLTINNIHA-TN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESCCC-SC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCC-ccChH-HHhcCCCCCEEEccCCCC-Cc-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 68889998884 44666 678889999999999844 33 3468889999999999997766678888889999999999
Q ss_pred cccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCC
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQ 752 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 752 (861)
+|.+.+..|..+..+++|++|++++|..++.++....+++|++|++++|.+.... . +..+++|+.|++++|+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~---l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-G---IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-T---GGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-H---hccCCCCCEEEeeCcc
Confidence 9998877788889999999999999965777775566889999999999876533 2 8889999999999985
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=7.1e-14 Score=156.37 Aligned_cols=182 Identities=20% Similarity=0.254 Sum_probs=124.9
Q ss_pred cccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEe
Q 038705 523 FLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLS 602 (861)
Q Consensus 523 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 602 (861)
+|+.|++++| .+..+|... +++|++|++++|. ++. +| ..+++|++|+
T Consensus 60 ~L~~L~Ls~n--~L~~lp~~l---~~~L~~L~Ls~N~-l~~------------------------ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 60 QFSELQLNRL--NLSSLPDNL---PPQITVLEITQNA-LIS------------------------LP---ELPASLEYLD 106 (571)
T ss_dssp TCSEEECCSS--CCSCCCSCC---CTTCSEEECCSSC-CSC------------------------CC---CCCTTCCEEE
T ss_pred CccEEEeCCC--CCCccCHhH---cCCCCEEECcCCC-Ccc------------------------cc---cccCCCCEEE
Confidence 7778888777 344455532 3667777777762 222 22 1123677788
Q ss_pred eccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcc
Q 038705 603 VDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLK 682 (861)
Q Consensus 603 l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 682 (861)
+++|. ++.+|. +.. +|++|++++|.+.+ +|. .+++|+.|++++|.. +.+|. .+++|++|++++|.+.+
T Consensus 107 Ls~N~-l~~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 107 ACDNR-LSTLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CCSSC-CSCCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSC
T ss_pred ccCCC-CCCcch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCCCC
Confidence 87774 344666 544 88888888887666 565 578888888888854 44665 45788888888887544
Q ss_pred cccccCCCCCccCEEeecCCCCCcccCCCCCCCCc-------cEEEecCccCcccccccccCCcCCCcCeEEeecCCCcc
Q 038705 683 ALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNL-------HSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMV 755 (861)
Q Consensus 683 ~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 755 (861)
+|. +. ++|+.|++++| .++.+|. +..+| +.|++++|.+.. +|.. +..+++|+.|++++|+..+
T Consensus 175 -lp~-l~--~~L~~L~Ls~N-~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~--l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTN-LLESLPA--VPVRNHHSEETEIFFRCRENRITH-IPEN--ILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -CCC-CC--TTCCEEECCSS-CCSSCCC--CC--------CCEEEECCSSCCCC-CCGG--GGGSCTTEEEECCSSSCCH
T ss_pred -cch-hh--CCCCEEECcCC-CCCchhh--HHHhhhcccccceEEecCCCccee-cCHH--HhcCCCCCEEEeeCCcCCC
Confidence 666 55 78888888888 5667776 55577 999999988774 4544 6679999999999998776
Q ss_pred ccCC
Q 038705 756 SFPQ 759 (861)
Q Consensus 756 ~~~~ 759 (861)
.+|.
T Consensus 245 ~~p~ 248 (571)
T 3cvr_A 245 RIRE 248 (571)
T ss_dssp HHHH
T ss_pred cCHH
Confidence 6654
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=3.1e-15 Score=160.26 Aligned_cols=92 Identities=12% Similarity=0.085 Sum_probs=58.2
Q ss_pred hhhhccCCCCcccEEEccCccccccC-----cccCCCC-ccceeeccCCccccc-chhhhcc-----ccccEEecCCccc
Q 038705 111 SVLYMLFKLQRLRVLSLRGYSIFHVP-----SSIGDLK-HLQYLDLSETKIKTL-PESVNKL-----WNLHTLLLENCHR 178 (861)
Q Consensus 111 ~~~~~~~~l~~L~~L~L~~~~i~~lp-----~~~~~L~-~L~~L~Ls~~~i~~l-p~~i~~L-----~~L~~L~l~~n~~ 178 (861)
.+|..+...++|++|+|++|.++..+ ..+..++ +|++|+|++|.++.. +..++.+ ++|++|++++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 33333555555777777777776654 4566666 677777777777644 4445554 7777777777765
Q ss_pred hhhchhhhhhc-----cccceeecCCCcc
Q 038705 179 LKKLCANMGSL-----IKLHHLKNSNVKA 202 (861)
Q Consensus 179 ~~~lp~~~~~L-----~~L~~L~l~~~~~ 202 (861)
....+..++.. ++|++|++++|.+
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 55555544443 6777777777774
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=9.4e-14 Score=135.89 Aligned_cols=157 Identities=15% Similarity=0.027 Sum_probs=116.7
Q ss_pred CcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEE
Q 038705 594 LPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKL 673 (861)
Q Consensus 594 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 673 (861)
+++++++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 34578889998885554444456788899999999888776666667888899999999885444333345678889999
Q ss_pred EeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecC
Q 038705 674 WIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 674 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 751 (861)
++++|.+.+..+..+..+++|++|++++| .++.++.. ..+++|++|++++|++ ...+++|+.|+++.|
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWIN 175 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB---------CCCTTTTHHHHHHHH
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe---------ecCCCCHHHHHHHHH
Confidence 99888866555556788888999999888 46666654 3467888888888865 345678888888888
Q ss_pred CCccccCCC
Q 038705 752 QDMVSFPQD 760 (861)
Q Consensus 752 ~~~~~~~~~ 760 (861)
...+.+|..
T Consensus 176 ~~~g~ip~~ 184 (208)
T 2o6s_A 176 KHSGVVRNS 184 (208)
T ss_dssp HCTTTBBCT
T ss_pred hCCceeecc
Confidence 777777753
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=4.4e-14 Score=145.85 Aligned_cols=170 Identities=19% Similarity=0.226 Sum_probs=100.6
Q ss_pred cCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhcccccee
Q 038705 116 LFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHL 195 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L 195 (861)
+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|. ++++++|++|++++|. +..+| .++.+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEE
Confidence 345566777777777776664 36667777777777777776665 7777777777777764 33343 36777777777
Q ss_pred ecCCCcccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhhe
Q 038705 196 KNSNVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLL 275 (861)
Q Consensus 196 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 275 (861)
++++|. +..+ ..++.+++|+.|++..+. +..+
T Consensus 118 ~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~------------------------l~~~---------------------- 149 (291)
T 1h6t_A 118 SLEHNG-ISDI-NGLVHLPQLESLYLGNNK------------------------ITDI---------------------- 149 (291)
T ss_dssp ECTTSC-CCCC-GGGGGCTTCCEEECCSSC------------------------CCCC----------------------
T ss_pred ECCCCc-CCCC-hhhcCCCCCCEEEccCCc------------------------CCcc----------------------
Confidence 777776 3333 235555555555332111 0000
Q ss_pred eeccCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCccee
Q 038705 276 EWTSSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHL 355 (861)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L 355 (861)
..+..+++|+.|++++|....++. + ..+++|+.|++++|.+.+ ++.+..+++|+.|
T Consensus 150 --------------------~~l~~l~~L~~L~L~~N~l~~~~~-l--~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L 205 (291)
T 1h6t_A 150 --------------------TVLSRLTKLDTLSLEDNQISDIVP-L--AGLTKLQNLYLSKNHISD-LRALAGLKNLDVL 205 (291)
T ss_dssp --------------------GGGGGCTTCSEEECCSSCCCCCGG-G--TTCTTCCEEECCSSCCCB-CGGGTTCTTCSEE
T ss_pred --------------------hhhccCCCCCEEEccCCccccchh-h--cCCCccCEEECCCCcCCC-ChhhccCCCCCEE
Confidence 012233556666666665555544 2 236777777777776543 4556677777777
Q ss_pred eecccc
Q 038705 356 FIIEMT 361 (861)
Q Consensus 356 ~l~~~~ 361 (861)
++++|+
T Consensus 206 ~l~~n~ 211 (291)
T 1h6t_A 206 ELFSQE 211 (291)
T ss_dssp EEEEEE
T ss_pred ECcCCc
Confidence 777664
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=3.2e-13 Score=132.91 Aligned_cols=148 Identities=15% Similarity=0.112 Sum_probs=77.8
Q ss_pred EEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEecccc
Q 038705 600 YLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECE 679 (861)
Q Consensus 600 ~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 679 (861)
.++.+++ .++.+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 15 ~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3444443 3334443332 455555555555544444455555555555555554444445555555555555555555
Q ss_pred CcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCC
Q 038705 680 KLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 680 ~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 753 (861)
+....+..+.++++|++|++++| .+..++.. ..+++|++|++++|.+.+..+.. +..+++|+.|++++|+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT--FSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH--HhCCCCCCEEEeCCCCc
Confidence 44333333455566666666665 34444333 22456666666666655444333 66677777777777754
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=4.3e-13 Score=132.97 Aligned_cols=150 Identities=14% Similarity=0.051 Sum_probs=92.7
Q ss_pred CcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCC-CCCCcCCccEEEec
Q 038705 598 LKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPD-GGFLSSTLTKLWIY 676 (861)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~ 676 (861)
.+.++.+++ .++.+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.. ..+|. .+..+++|+.|+++
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECC
Confidence 445555554 3455554443 6666777777666666666666677777777777643 34443 34556677777777
Q ss_pred cccCcccccccCCCCCccCEEeecCCCCCcccCCC-CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCc
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED-GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDM 754 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 754 (861)
+|.+.+..+..+..+++|++|++++| .++.+|.. ..+++|++|++++|.+....+.. +..+++|+.|++++|+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGA--FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCCcc
Confidence 76655444445666777777777777 45555544 34567777777777665443322 677778888888877643
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.9e-13 Score=141.05 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=41.2
Q ss_pred cCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEec
Q 038705 597 ALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIY 676 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 676 (861)
+|++|++++|. ++.++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|... .+ ..+..+++|+.|+++
T Consensus 91 ~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 91 NLGWLFLDENK-VKDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLE 164 (291)
T ss_dssp TCCEEECCSSC-CCCGG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECC
T ss_pred CCCEEECCCCc-CCCCh-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC-cc-hhhccCCCCCEEEcc
Confidence 34455555442 22222 244455555555555544331 23444455555555554322 12 223334444444444
Q ss_pred cccCcccccccCCCCCccCEEeecCC
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDL 702 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n 702 (861)
+|.+.+..+ +..+++|++|++++|
T Consensus 165 ~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 165 DNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCccccchh--hcCCCccCEEECCCC
Confidence 444322221 344444444444444
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=3.2e-13 Score=151.11 Aligned_cols=182 Identities=23% Similarity=0.225 Sum_probs=130.4
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+++.|++++|.+.+ +|..+ +++|++|++++| .+..+| ..+++|++|++++| .++. ++.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N--~l~~ip----~~l~~L~~L~Ls~N-~l~~-ip~----------- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQN--ALISLP----ELPASLEYLDACDN-RLST-LPE----------- 117 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS--CCSCCC----CCCTTCCEEECCSS-CCSC-CCC-----------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC--CCcccc----cccCCCCEEEccCC-CCCC-cch-----------
Confidence 89999999999876 66544 489999999999 444666 45789999999998 3333 111
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCce
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLI 658 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 658 (861)
++.+|++|++++|.. +.+|. .+++|+.|++++|.+.+ +|. .+++|++|++++|. ++
T Consensus 118 ---------------l~~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-L~ 173 (571)
T 3cvr_A 118 ---------------LPASLKHLDVDNNQL-TMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ-LT 173 (571)
T ss_dssp ---------------CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-CS
T ss_pred ---------------hhcCCCEEECCCCcC-CCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC-CC
Confidence 222577788877743 34665 57888888888887665 555 46788888888885 44
Q ss_pred ecCCCCCCcCCccEEEeccccCcccccccCCCCCcc-------CEEeecCCCCCcccCCC-CCCCCccEEEecCccCccc
Q 038705 659 SFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSL-------QELEIGDLPSMVYFPED-GFPTNLHSLEIRDMKMWKS 730 (861)
Q Consensus 659 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L-------~~L~l~~n~~l~~~~~~-~~~~~L~~L~l~~~~~~~~ 730 (861)
.+|. +. ++|+.|++++|.+. .+|. +.. +| +.|++++| .++.+|.. ..+++|+.|++++|++.+.
T Consensus 174 ~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 174 FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 4776 43 78888888888754 6666 543 66 88888888 56677764 3378899999999988876
Q ss_pred cccc
Q 038705 731 LIEW 734 (861)
Q Consensus 731 ~~~~ 734 (861)
++..
T Consensus 246 ~p~~ 249 (571)
T 3cvr_A 246 IRES 249 (571)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 6654
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=7e-13 Score=130.46 Aligned_cols=151 Identities=13% Similarity=0.047 Sum_probs=108.6
Q ss_pred CcEEeeccccCcchhhhhccCCCCccEEeeccccCccccc-ccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEec
Q 038705 598 LKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLP-DGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIY 676 (861)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 676 (861)
-+.++++++ .++.+|..+. +.+++|++++|.+.+..+ ..|..+++|++|++++|......+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 456777776 4455665543 456788888887766644 446778888888888886555445567778888888888
Q ss_pred cccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCc
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDM 754 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 754 (861)
+|.+.+..+..+..+++|++|++++| .+..++.. ..+++|++|++++|.+.+..+.. +..+++|+.|++++|+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA--FDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT--TTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHH--hcCCCCCCEEEecCcCCc
Confidence 88876666666788888888888888 45555433 34678888888888877765554 888899999999988654
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=2.9e-13 Score=144.67 Aligned_cols=159 Identities=16% Similarity=0.112 Sum_probs=130.6
Q ss_pred CCcccCcEEeeccccCcchhhhhcc-CCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCcc
Q 038705 593 NLPKALKYLSVDHCLKLKSLAERLD-NNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLT 671 (861)
Q Consensus 593 ~~~~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 671 (861)
.+|..++.|++++|...+..+..+. .+++|+.|+|++|.+.+..+..|..+++|++|++++|......+..+..+++|+
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 3556799999999965554455566 899999999999998887788899999999999999965554455677899999
Q ss_pred EEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCC-----CCCccEEEecCccCcccccccccCCcCCC--cC
Q 038705 672 KLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGF-----PTNLHSLEIRDMKMWKSLIEWEPLNRFTS--LR 744 (861)
Q Consensus 672 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~l~~--L~ 744 (861)
.|++++|.+....|..+..+++|++|++++| .+..+|...+ +++|+.|++++|.+....... +..++. |+
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~l~~~~l~ 192 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD--LQKLPAWVKN 192 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHH--HHHSCHHHHT
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHH--hhhccHhhcc
Confidence 9999999988777889999999999999999 6777776543 789999999999987644333 677776 48
Q ss_pred eEEeecCCCc
Q 038705 745 RLSIHGCQDM 754 (861)
Q Consensus 745 ~L~l~~~~~~ 754 (861)
.|++++|+..
T Consensus 193 ~l~l~~N~~~ 202 (361)
T 2xot_A 193 GLYLHNNPLE 202 (361)
T ss_dssp TEECCSSCEE
T ss_pred eEEecCCCcc
Confidence 9999998753
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=3.4e-13 Score=130.39 Aligned_cols=152 Identities=14% Similarity=0.065 Sum_probs=91.4
Q ss_pred hhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCccc
Q 038705 518 LLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKA 597 (861)
Q Consensus 518 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 597 (861)
...+++|+.|++++| .+..++. +..+++|++|++++| .++. ++....++ +
T Consensus 40 ~~~l~~L~~L~l~~n--~i~~l~~--l~~l~~L~~L~l~~n-~~~~------------------------~~~l~~l~-~ 89 (197)
T 4ezg_A 40 EAQMNSLTYITLANI--NVTDLTG--IEYAHNIKDLTINNI-HATN------------------------YNPISGLS-N 89 (197)
T ss_dssp HHHHHTCCEEEEESS--CCSCCTT--GGGCTTCSEEEEESC-CCSC------------------------CGGGTTCT-T
T ss_pred hhhcCCccEEeccCC--CccChHH--HhcCCCCCEEEccCC-CCCc------------------------chhhhcCC-C
Confidence 356778888888888 3334452 356677777777776 2221 11122233 5
Q ss_pred CcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEecc
Q 038705 598 LKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYE 677 (861)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 677 (861)
|++|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++|++++|..++.+| .+..+++|+.|++++
T Consensus 90 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF 168 (197)
T ss_dssp CCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT
T ss_pred CCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC
Confidence 7777777765555556666677777777777777666666666667777777777765355554 345556666666666
Q ss_pred ccCcccccccCCCCCccCEEeecCC
Q 038705 678 CEKLKALPNGMHNLTSLQELEIGDL 702 (861)
Q Consensus 678 ~~~~~~~~~~l~~l~~L~~L~l~~n 702 (861)
|.+.. ++ .+..+++|++|++++|
T Consensus 169 n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 169 DGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp BCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred CCCcC-hH-HhccCCCCCEEEeeCc
Confidence 65433 22 4555556666666555
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=1e-12 Score=128.48 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=115.9
Q ss_pred CcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCC-CCCCcCCccEEEec
Q 038705 598 LKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPD-GGFLSSTLTKLWIY 676 (861)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~ 676 (861)
-+.++.+++ .+..+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|... .++. .+..+++|++|+++
T Consensus 9 ~~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 345666655 345555444 468999999999988766777889999999999999554 4544 45678999999999
Q ss_pred cccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCc
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDM 754 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 754 (861)
+|.+.+..+..+..+++|++|++++| .++.++.. ..+++|++|++++|.+.+..+.. +..+++|+.|++++|+..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSCCBC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHH--hccCCCccEEEecCCCee
Confidence 99876655566789999999999999 56676664 44789999999999887654433 788999999999998543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=2.2e-12 Score=126.96 Aligned_cols=134 Identities=11% Similarity=0.095 Sum_probs=113.9
Q ss_pred CcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCC-CCCcCCccE
Q 038705 594 LPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDG-GFLSSTLTK 672 (861)
Q Consensus 594 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~ 672 (861)
+|++++.|++++|...+..+..+..+++|++|+|++|.+.+..|..|.++++|++|++++|.. ..+|.. +..+++|+.
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCE
Confidence 456899999999965555555788999999999999999888899999999999999999954 456654 567899999
Q ss_pred EEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcc
Q 038705 673 LWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWK 729 (861)
Q Consensus 673 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~ 729 (861)
|++++|.+.+..|..+..+++|++|++++| .++.++.. ..+++|+.|++++|++.-
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999988887889999999999999999 57777664 347899999999998754
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=5.5e-13 Score=151.07 Aligned_cols=98 Identities=19% Similarity=0.160 Sum_probs=46.9
Q ss_pred cCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEec
Q 038705 597 ALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIY 676 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 676 (861)
+|+.|++++|... .+ ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|......| +..+++|+.|+|+
T Consensus 110 ~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 110 KLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp TCCEEECTTSCCC-CC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCEEEecCCCCC-CC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence 4555555555322 22 2344555555555555554432 334455555555555553333222 4444555555555
Q ss_pred cccCcccccccCCCCCccCEEeecCC
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDL 702 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n 702 (861)
+|.+.+ + ..+..+++|+.|+|++|
T Consensus 184 ~N~i~~-l-~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 184 KNHISD-L-RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp SSCCCB-C-GGGTTCTTCSEEECCSE
T ss_pred CCCCCC-C-hHHccCCCCCEEEccCC
Confidence 554332 2 23445555555555555
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=1.6e-13 Score=139.12 Aligned_cols=166 Identities=19% Similarity=0.196 Sum_probs=92.0
Q ss_pred CCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccceeecC
Q 038705 119 LQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNS 198 (861)
Q Consensus 119 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~ 198 (861)
+.++..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++|. +..+|. ++.+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECC
Confidence 444555556666666554 4556666666666666666665 56666666666666653 333333 6666666666666
Q ss_pred CCcccccCccccccccccccccceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeec
Q 038705 199 NVKALEEMPKGIGNLTHLLTLSRFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWT 278 (861)
Q Consensus 199 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (861)
+|. +..+|... . ++|+.|++..+
T Consensus 94 ~N~-l~~l~~~~-~-~~L~~L~L~~N------------------------------------------------------ 116 (263)
T 1xeu_A 94 RNR-LKNLNGIP-S-ACLSRLFLDNN------------------------------------------------------ 116 (263)
T ss_dssp SSC-CSCCTTCC-C-SSCCEEECCSS------------------------------------------------------
T ss_pred CCc-cCCcCccc-c-CcccEEEccCC------------------------------------------------------
Confidence 665 33333211 1 33333322111
Q ss_pred cCCCCCCcchhhHHHhhcccCCCCCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCcceeeec
Q 038705 279 SSTSDDPMEHENVTLMLDGLKPHRNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLPSVGQLPLLKHLFII 358 (861)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~~l~~l~~L~~L~l~ 358 (861)
.... ...+..+++|+.|++++|....++. + ..+++|+.|++++|.+.+. +.+..+++|+.|+++
T Consensus 117 ~l~~------------~~~l~~l~~L~~L~Ls~N~i~~~~~-l--~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 117 ELRD------------TDSLIHLKNLEILSIRNNKLKSIVM-L--GFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLT 180 (263)
T ss_dssp CCSB------------SGGGTTCTTCCEEECTTSCCCBCGG-G--GGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEE
T ss_pred ccCC------------ChhhcCcccccEEECCCCcCCCChH-H--ccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCC
Confidence 1000 0012334556666666666555542 2 2367788888888776554 667778888888887
Q ss_pred ccc
Q 038705 359 EMT 361 (861)
Q Consensus 359 ~~~ 361 (861)
+|+
T Consensus 181 ~N~ 183 (263)
T 1xeu_A 181 GQK 183 (263)
T ss_dssp EEE
T ss_pred CCc
Confidence 775
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=3.1e-12 Score=126.80 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=113.4
Q ss_pred CCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccE
Q 038705 593 NLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTK 672 (861)
Q Consensus 593 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 672 (861)
.+|++|++|++++|...+..|..+..+++|++|+|++|.+.+..+..|..+++|++|++++|......+..+..+++|+.
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 34568999999999777766888999999999999999986666677889999999999999655444444677999999
Q ss_pred EEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCccc
Q 038705 673 LWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKS 730 (861)
Q Consensus 673 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~ 730 (861)
|++++|.+. .+|..+..+++|++|++++| .+..++.. ..+++|+.|++++|++...
T Consensus 117 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 117 LFMCCNKLT-ELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp EECCSSCCC-SCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred EeccCCccc-ccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999999854 78888999999999999999 67777765 3478999999999987654
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=4.9e-13 Score=122.85 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=100.0
Q ss_pred ccCCccEEeecccccCcCCcccch-hhhhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccc-cchhhh
Q 038705 86 DAKRLRTFLPLVLSNTWSGKAYLA-HSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKT-LPESVN 163 (861)
Q Consensus 86 ~~~~Lr~L~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~-lp~~i~ 163 (861)
..++|+.|.+.++. +. ..+|..|..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++
T Consensus 15 ~~~~l~~L~l~~n~--------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 15 TPSDVKELVLDNSR--------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp CGGGCSEEECTTCB--------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred CCccCeEEEccCCc--------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 45778888775533 22 35565688999999999999999888 778999999999999999987 777788
Q ss_pred ccccccEEecCCccchhh-chhhhhhccccceeecCCCcccccCcc----ccccccccccccc
Q 038705 164 KLWNLHTLLLENCHRLKK-LCANMGSLIKLHHLKNSNVKALEEMPK----GIGNLTHLLTLSR 221 (861)
Q Consensus 164 ~L~~L~~L~l~~n~~~~~-lp~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~ 221 (861)
.+++|++|++++|.+.+. .|..++.+++|++|++++|. +..+|. .++.+++|+.|++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 899999999999864442 34778999999999999998 444554 5888888888865
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=8.3e-13 Score=149.63 Aligned_cols=170 Identities=15% Similarity=0.134 Sum_probs=104.2
Q ss_pred cCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCCCcccccccCCCcccCcEEeeccccCcchhhhhccCCCCccE
Q 038705 545 RYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEA 624 (861)
Q Consensus 545 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 624 (861)
..+++|+.|++++|. +.. ++. ...++ +|+.|++++|.. ..++. +..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~-i~~-l~~-----------------------l~~l~-~L~~L~Ls~N~l-~~~~~-l~~l~~L~~ 91 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKS-VQG-----------------------IQYLP-NVTKLFLNGNKL-TDIKP-LTNLKNLGW 91 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCC-CTT-----------------------GGGCT-TCCEEECTTSCC-CCCGG-GGGCTTCCE
T ss_pred hcCCCCCEEECcCCC-CCC-ChH-----------------------HccCC-CCCEEEeeCCCC-CCChh-hccCCCCCE
Confidence 457788888888873 332 111 11222 577777777643 33333 666777777
Q ss_pred EeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCC
Q 038705 625 VKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPS 704 (861)
Q Consensus 625 L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 704 (861)
|+|++|.+.+ +| .+..+++|+.|+|++|... .++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++| .
T Consensus 92 L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~ 164 (605)
T 1m9s_A 92 LFLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-Q 164 (605)
T ss_dssp EECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-CCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS-C
T ss_pred EECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-CCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC-c
Confidence 7777776544 23 5666777777777777433 333 355567777777777765443 45667777777777777 3
Q ss_pred CcccCCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCC
Q 038705 705 MVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 705 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 753 (861)
+..++....+++|+.|+|++|.+... +. +..+++|+.|++++|+.
T Consensus 165 l~~~~~l~~l~~L~~L~Ls~N~i~~l-~~---l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 165 ISDIVPLAGLTKLQNLYLSKNHISDL-RA---LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCBC-GG---GTTCTTCSEEECCSEEE
T ss_pred CCCchhhccCCCCCEEECcCCCCCCC-hH---HccCCCCCEEEccCCcC
Confidence 44443345567777777777766543 22 66777777777777743
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=6.3e-12 Score=123.63 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=46.2
Q ss_pred CcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEecc
Q 038705 598 LKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYE 677 (861)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 677 (861)
|++|++++|...+..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|......|..+..+++|+.|++++
T Consensus 59 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 44444444432222222344444444444444444444444444444444444444433333334444444444444444
Q ss_pred ccCcccccccCCCCCccCEEeecCC
Q 038705 678 CEKLKALPNGMHNLTSLQELEIGDL 702 (861)
Q Consensus 678 ~~~~~~~~~~l~~l~~L~~L~l~~n 702 (861)
|.+.+..|..+..+++|++|++++|
T Consensus 139 N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 139 NQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CcCCEECHHHhcCCCCCCEEEecCc
Confidence 4444433444444444444444444
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1e-12 Score=123.46 Aligned_cols=128 Identities=23% Similarity=0.219 Sum_probs=85.7
Q ss_pred cCCccEEeecccccCcCCcccch-hhhhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccc-cchhhhc
Q 038705 87 AKRLRTFLPLVLSNTWSGKAYLA-HSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKT-LPESVNK 164 (861)
Q Consensus 87 ~~~Lr~L~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~-lp~~i~~ 164 (861)
.++|++|.+.++. +. ..+|..|..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+++
T Consensus 23 ~~~L~~L~l~~n~--------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCK--------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCB--------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCC--------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 3566676664432 22 24444467777777777777777766 667777777777777777775 6666777
Q ss_pred cccccEEecCCccchhhch--hhhhhccccceeecCCCcccccCcc----ccccccccccccceEec
Q 038705 165 LWNLHTLLLENCHRLKKLC--ANMGSLIKLHHLKNSNVKALEEMPK----GIGNLTHLLTLSRFVVG 225 (861)
Q Consensus 165 L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~~ 225 (861)
+++|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .+..+++|+.|++..+.
T Consensus 94 l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 94 LPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 7777777777774 34433 567777777777777777 444444 56777777777666554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=3.1e-12 Score=129.60 Aligned_cols=143 Identities=18% Similarity=0.255 Sum_probs=115.5
Q ss_pred cCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEec
Q 038705 597 ALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIY 676 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 676 (861)
+|++|++++| .++.++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|. +..+|.... ++|+.|+++
T Consensus 42 ~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECC
T ss_pred cCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEcc
Confidence 6889999988 455666 67889999999999998766544 8889999999999995 445655333 899999999
Q ss_pred cccCcccccccCCCCCccCEEeecCCCCCcccCCCCCCCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCC
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGFPTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQD 753 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 753 (861)
+|.+.+ ++ .+..+++|++|++++| .++.++....+++|++|++++|.+... .. +..+++|+.|++++|+.
T Consensus 115 ~N~l~~-~~-~l~~l~~L~~L~Ls~N-~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~--l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 115 NNELRD-TD-SLIHLKNLEILSIRNN-KLKSIVMLGFLSKLEVLDLHGNEITNT--GG--LTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp SSCCSB-SG-GGTTCTTCCEEECTTS-CCCBCGGGGGCTTCCEEECTTSCCCBC--TT--STTCCCCCEEEEEEEEE
T ss_pred CCccCC-Ch-hhcCcccccEEECCCC-cCCCChHHccCCCCCEEECCCCcCcch--HH--hccCCCCCEEeCCCCcc
Confidence 998654 43 5889999999999999 577776556689999999999998776 22 88999999999999854
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=8.6e-13 Score=153.61 Aligned_cols=154 Identities=21% Similarity=0.191 Sum_probs=97.7
Q ss_pred CCceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhc-cCCCCcccEEEccCccccccCcccC
Q 038705 62 SENLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYM-LFKLQRLRVLSLRGYSIFHVPSSIG 140 (861)
Q Consensus 62 ~~~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~lp~~~~ 140 (861)
...++++++..+.++.. .........|+.+.+.+... .. ....++++ |..++.|++|+|++|.+..+|..+.
T Consensus 172 ~~~~~~l~L~~n~~~~~--~~~~l~~l~Ls~~~i~~~~~---~~--n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 244 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA--NQALLQHKKLSQYSIDEDDD---IE--NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred CCccceEEeeCCCCCcc--hhhHhhcCccCcccccCccc---cc--cceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence 35588888887765542 23344555666665544321 11 12235555 9999999999999999999999999
Q ss_pred CCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCcccccccccccccc
Q 038705 141 DLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLTLS 220 (861)
Q Consensus 141 ~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 220 (861)
.+++|++|+|++|.|+.+|..|++|++|++|+|++|.+. .+|..|+.|++|++|++++|. ++.+|.+|++|++|++|+
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEe
Confidence 999999999999999999999999999999999999654 889999999999999999998 678999999999999996
Q ss_pred ceEe
Q 038705 221 RFVV 224 (861)
Q Consensus 221 ~~~~ 224 (861)
+..+
T Consensus 323 L~~N 326 (727)
T 4b8c_D 323 VEGN 326 (727)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 5433
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=1e-12 Score=123.52 Aligned_cols=139 Identities=25% Similarity=0.238 Sum_probs=112.4
Q ss_pred CCCCceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccc-cCcc
Q 038705 60 RFSENLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFH-VPSS 138 (861)
Q Consensus 60 ~~~~~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-lp~~ 138 (861)
..+.+++++.+.++.+........+..+++|++|.+.++. + ..+ ..|..+++|++|++++|.++. +|..
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~--------l-~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--------L-ISV-SNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC--------C-CCC-SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC--------C-CCh-hhhccCCCCCEEECcCCcCchHHHHH
Confidence 4567899999999987611223446889999999996644 2 223 559999999999999999998 6777
Q ss_pred cCCCCccceeeccCCcccccc--hhhhccccccEEecCCccchhhch---hhhhhccccceeecCCCcccccCccc
Q 038705 139 IGDLKHLQYLDLSETKIKTLP--ESVNKLWNLHTLLLENCHRLKKLC---ANMGSLIKLHHLKNSNVKALEEMPKG 209 (861)
Q Consensus 139 ~~~L~~L~~L~Ls~~~i~~lp--~~i~~L~~L~~L~l~~n~~~~~lp---~~~~~L~~L~~L~l~~~~~~~~~p~~ 209 (861)
+..+++|++|++++|.++.+| ..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|. ...+|.+
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 788999999999999999987 679999999999999996544433 378999999999999998 5566643
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=9.1e-14 Score=156.54 Aligned_cols=201 Identities=17% Similarity=0.106 Sum_probs=130.5
Q ss_pred cCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCcccccccccccc
Q 038705 139 IGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNLTHLLT 218 (861)
Q Consensus 139 ~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 218 (861)
+..+++|+.|+|++|.++.+|..|+++++|+.|++++|.....+|..+..+ ...+..|..++.+++|+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~-----------~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL-----------DPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------CTGGGHHHHHHHHHHHHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhc-----------ccccCCHHHHHHHHhccc
Confidence 367899999999999999999999999999999998764334444222111 113445666777777776
Q ss_pred cc-ceEecccCCCCcccccccccccceeeecCccCCCChhHHHHHhhhcccCcchhheeeccCCCCCCcchhhHHHhhcc
Q 038705 219 LS-RFVVGKDVGSGLRTLKLLKHLQGTLDISKLENVKDASEAKEAQLIEKRNLLRLLLEWTSSTSDDPMEHENVTLMLDG 297 (861)
Q Consensus 219 L~-~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 297 (861)
|+ +..+ ....|..+.+..|.. ..
T Consensus 414 L~~l~~n-----------------------------------------~~~~L~~l~l~~n~i---------------~~ 437 (567)
T 1dce_A 414 VDPMRAA-----------------------------------------YLDDLRSKFLLENSV---------------LK 437 (567)
T ss_dssp HCGGGHH-----------------------------------------HHHHHHHHHHHHHHH---------------HH
T ss_pred Ccchhhc-----------------------------------------ccchhhhhhhhcccc---------------cc
Confidence 64 1100 011222222222110 00
Q ss_pred cCCCCCccEEEEeecCCCCCCcCCCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeeccccceeEECccccCCcCc
Q 038705 298 LKPHRNLEELTIRGYGGTTFPTWMGDSSFANLVLLRFEGCHRCTSLP-SVGQLPLLKHLFIIEMTSVKMVGSEFYGNHCS 376 (861)
Q Consensus 298 l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 376 (861)
+ +...|+.|++++|....+|. + ..+++|+.|++++|.+. .+| .++.+++|+.|++++|.... ++ .+
T Consensus 438 l-~~~~L~~L~Ls~n~l~~lp~-~--~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l------ 504 (567)
T 1dce_A 438 M-EYADVRVLHLAHKDLTVLCH-L--EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GV------ 504 (567)
T ss_dssp H-HHTTCSEEECTTSCCSSCCC-G--GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GG------
T ss_pred c-CccCceEEEecCCCCCCCcC-c--cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-cc------
Confidence 0 01357778888887777776 4 34778888888888876 455 67788888888888775443 33 22
Q ss_pred CCCCCcceEeccccccccccc-cCCCCCcccccCccceEeccCCCCCcCC
Q 038705 377 VPFPSLETLCFQDIQEWEGWI-PHGSGKEVNVFPQLRELSLIGCPKLQGR 425 (861)
Q Consensus 377 ~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 425 (861)
..+++|+.|++++ +.+.+.. +..+.. +++|+.|++++ |.+++.
T Consensus 505 ~~l~~L~~L~Ls~-N~l~~~~~p~~l~~----l~~L~~L~L~~-N~l~~~ 548 (567)
T 1dce_A 505 ANLPRLQELLLCN-NRLQQSAAIQPLVS----CPRLVLLNLQG-NSLCQE 548 (567)
T ss_dssp TTCSSCCEEECCS-SCCCSSSTTGGGGG----CTTCCEEECTT-SGGGGS
T ss_pred CCCCCCcEEECCC-CCCCCCCCcHHHhc----CCCCCEEEecC-CcCCCC
Confidence 2378888888887 5777765 666665 88999999998 677743
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=5.4e-12 Score=134.73 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=123.4
Q ss_pred CcEEeeccccCcchhhhhccCCCCccEEeeccccCccccccccc-CCCCCcEEeeccCCCceecCCCCCCcCCccEEEec
Q 038705 598 LKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLL-KLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIY 676 (861)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 676 (861)
-+.++++++ .++.+|..+. +.++.|+|++|.+.+..+..+. .+++|++|++++|......+..+..+++|+.|+++
T Consensus 20 ~~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 457888877 5667777654 5689999999998887777787 89999999999996666555678889999999999
Q ss_pred cccCcccccccCCCCCccCEEeecCCCCCcccCCC--CCCCCccEEEecCccCcccccccccC---CcCCCcCeEEeecC
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--GFPTNLHSLEIRDMKMWKSLIEWEPL---NRFTSLRRLSIHGC 751 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~---~~l~~L~~L~l~~~ 751 (861)
+|.+....+..+.++++|++|++++| .+..++.. ..+++|+.|++++|.+....... + ..+++|+.|++++|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~--~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL--IKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG--TC----CTTCCEEECCSS
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHH--hcCcccCCcCCEEECCCC
Confidence 99976666667899999999999999 56666544 44799999999999987644332 4 57999999999998
Q ss_pred CCccccCC
Q 038705 752 QDMVSFPQ 759 (861)
Q Consensus 752 ~~~~~~~~ 759 (861)
. +..++.
T Consensus 174 ~-l~~l~~ 180 (361)
T 2xot_A 174 K-LKKLPL 180 (361)
T ss_dssp C-CCCCCH
T ss_pred C-CCccCH
Confidence 4 455553
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=2.2e-12 Score=122.13 Aligned_cols=131 Identities=18% Similarity=0.118 Sum_probs=101.5
Q ss_pred hhhcccCCccEEeecccccCcCCcccchhhhhhccCCCC-cccEEEccCccccccCcccCCCCccceeeccCCcccccch
Q 038705 82 EVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQ-RLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPE 160 (861)
Q Consensus 82 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~ 160 (861)
..+.++++|+.|.+.++. + ..+ +.+..+. +|++|++++|.++.+ ..|..+++|++|++++|.|+.+|.
T Consensus 13 ~~~~~~~~L~~L~l~~n~--------l-~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK--------I-PVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp CEEECTTSCEEEECTTSC--------C-CSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECS
T ss_pred HhcCCcCCceEEEeeCCC--------C-chh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCc
Confidence 446678888888886543 1 233 3444544 899999999998888 678889999999999999998886
Q ss_pred h-hhccccccEEecCCccchhhchh--hhhhccccceeecCCCcccccCccc----cccccccccccceEec
Q 038705 161 S-VNKLWNLHTLLLENCHRLKKLCA--NMGSLIKLHHLKNSNVKALEEMPKG----IGNLTHLLTLSRFVVG 225 (861)
Q Consensus 161 ~-i~~L~~L~~L~l~~n~~~~~lp~--~~~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~~~~ 225 (861)
. ++.+++|++|++++|. ++.+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|++..+.
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6 4899999999999985 466776 78889999999999998 4566764 7888888888776553
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=2.2e-12 Score=118.39 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=92.9
Q ss_pred CCCCcccEEEccCcccc--ccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccce
Q 038705 117 FKLQRLRVLSLRGYSIF--HVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHH 194 (861)
Q Consensus 117 ~~l~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~ 194 (861)
...++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++++++|++|++++|.+.+.+|..++.+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 44578999999999998 8899999999999999999999988 78999999999999999776668988899999999
Q ss_pred eecCCCcccccCc--cccccccccccccceEe
Q 038705 195 LKNSNVKALEEMP--KGIGNLTHLLTLSRFVV 224 (861)
Q Consensus 195 L~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~ 224 (861)
|++++|.+ ..+| ..++.+++|++|++..+
T Consensus 93 L~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 93 LNLSGNKI-KDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp EECTTSCC-CSHHHHGGGGGCTTCCEEECTTC
T ss_pred EECCCCcC-CChHHHHHHhhCCCCCEEeCcCC
Confidence 99999994 4443 77899999998866544
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=2.5e-12 Score=123.57 Aligned_cols=86 Identities=24% Similarity=0.273 Sum_probs=44.5
Q ss_pred cCCCCcccEEEccCcccccc-CcccCCCCccceeeccCCcccccchh-hhccccccEEecCCccchhhchhhhhhccccc
Q 038705 116 LFKLQRLRVLSLRGYSIFHV-PSSIGDLKHLQYLDLSETKIKTLPES-VNKLWNLHTLLLENCHRLKKLCANMGSLIKLH 193 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~ 193 (861)
|..+++|++|+|++|.++.+ |.+|..+++|++|+|++|.|+.+|.. |+.+++|++|++++|.+.+..|..++.+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 45555555555555555544 44455555555555555555544332 55555555555555544444444555555555
Q ss_pred eeecCCCc
Q 038705 194 HLKNSNVK 201 (861)
Q Consensus 194 ~L~l~~~~ 201 (861)
+|++++|.
T Consensus 130 ~L~L~~N~ 137 (192)
T 1w8a_A 130 SLNLASNP 137 (192)
T ss_dssp EEECTTCC
T ss_pred EEEeCCCC
Confidence 55555554
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=5.8e-12 Score=120.86 Aligned_cols=100 Identities=26% Similarity=0.336 Sum_probs=54.3
Q ss_pred cccEEEccCccccccCcccCCCCccceeeccCCcccccch-hhhccccccEEecCCccchhhchhhhhhccccceeecCC
Q 038705 121 RLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPE-SVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSN 199 (861)
Q Consensus 121 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~ 199 (861)
+|++|++++|.++.+|..|..+++|++|+|++|.|+.++. .|.++++|++|++++|.+....|..|..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 4555555555555555555555556666665555555543 355555566666655544444444555555566666655
Q ss_pred CcccccCcc-ccccccccccccc
Q 038705 200 VKALEEMPK-GIGNLTHLLTLSR 221 (861)
Q Consensus 200 ~~~~~~~p~-~i~~l~~L~~L~~ 221 (861)
|. +..+|. .+..+++|+.|++
T Consensus 112 N~-l~~~~~~~~~~l~~L~~L~L 133 (193)
T 2wfh_A 112 ND-ISVVPEGAFNDLSALSHLAI 133 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEEC
T ss_pred CC-CCeeChhhhhcCccccEEEe
Confidence 55 333333 2555555555543
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=1.2e-12 Score=152.39 Aligned_cols=123 Identities=21% Similarity=0.271 Sum_probs=105.0
Q ss_pred hhhhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccch
Q 038705 81 FEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPE 160 (861)
Q Consensus 81 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~ 160 (861)
...+..+++|++|.+.++. ...+|..+.++++|++|+|++|.|+.+|..|+.|++|++|+|++|.|+.+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~---------l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~ 287 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ---------IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287 (727)
T ss_dssp -----CCCCCCEEECTTSC---------CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCS
T ss_pred hhhhccCCCCcEEECCCCC---------CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccCh
Confidence 3557789999999986644 2367777669999999999999999999999999999999999999999999
Q ss_pred hhhccccccEEecCCccchhhchhhhhhccccceeecCCCcccccCccccccc
Q 038705 161 SVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVKALEEMPKGIGNL 213 (861)
Q Consensus 161 ~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l 213 (861)
.|++|++|++|+|++|. ++.+|..|+.|++|++|++++|.+.+.+|..+..+
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred hhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 99999999999999985 56889999999999999999999777777766554
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=1.3e-11 Score=138.89 Aligned_cols=105 Identities=19% Similarity=0.180 Sum_probs=92.6
Q ss_pred cccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhccccceeecCCC
Q 038705 121 RLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNV 200 (861)
Q Consensus 121 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~ 200 (861)
.|++|+|++|.++.+|. |+.+++|++|+|++|.|+.+|..|+++++|++|+|++|.+. .+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCC
Confidence 58999999999999987 99999999999999999999999999999999999998644 578 8999999999999999
Q ss_pred cccccC-ccccccccccccccceEecccC
Q 038705 201 KALEEM-PKGIGNLTHLLTLSRFVVGKDV 228 (861)
Q Consensus 201 ~~~~~~-p~~i~~l~~L~~L~~~~~~~~~ 228 (861)
.+.+.. |..++.+++|+.|++..+....
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 955544 8899999999999887766543
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=4.2e-11 Score=126.12 Aligned_cols=216 Identities=13% Similarity=0.073 Sum_probs=130.7
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCC---ccccCCCCCC--CCC
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCAS---LTSLLPKNEL--PAT 573 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---l~~~~~~~~~--~~~ 573 (861)
+|+++++.+ .+......+|.++++|+.+++.+| .+..++..+|..+.++..+....... ... +..... ...
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n--~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~-i~~~~f~~~~~ 177 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK--TAPNLLPEALADSVTAIFIPLGSSDAYRFKNR-WEHFAFIEGEP 177 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS--SCCEECTTSSCTTTCEEEECTTCTHHHHTSTT-TTTSCEEESCC
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCC--CccccchhhhcCCCceEEecCcchhhhhcccc-ccccccccccc
Confidence 666666666 555555556777777777777776 44456666555555555444333110 000 000000 122
Q ss_pred cc-EEEEecCCCcccccc-cCCCcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEee
Q 038705 574 LE-HLHVKSCGNLAFLSL-VGNLPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFI 651 (861)
Q Consensus 574 L~-~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 651 (861)
|+ .+.+.....+..... .+..+.++..+.+.+.-...........+++|+.++|++|.+...-+..|.++++|+++++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 22 233322222221111 1122346777877775322222222224789999999998877666778999999999999
Q ss_pred ccCCCceecCC-CCCCcCCcc-EEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCC--CCCccEEEe
Q 038705 652 SHCPNLISFPD-GGFLSSTLT-KLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGF--PTNLHSLEI 722 (861)
Q Consensus 652 ~~~~~~~~~~~-~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~--~~~L~~L~l 722 (861)
.+| +..++. .+..+++|+ .+++.+ .....-+..|.+|++|+.+++.+| .++.++...| +++|+.++.
T Consensus 258 ~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 258 PHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred Ccc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 987 555554 566788999 999987 433444578899999999999887 6888887755 778888753
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=9.4e-11 Score=112.45 Aligned_cols=101 Identities=15% Similarity=0.036 Sum_probs=47.9
Q ss_pred cEEeeccccCcchhhhhccCCCCccEEeeccccCcccccc-cccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEecc
Q 038705 599 KYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPD-GLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYE 677 (861)
Q Consensus 599 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 677 (861)
+.++++++ .++.+|..+. .+|++|++++|.+.+..+. .+..+++|++|++++|...+..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 44555554 2344444332 2555555555544433332 244555555555555544443344444455555555555
Q ss_pred ccCcccccccCCCCCccCEEeecCC
Q 038705 678 CEKLKALPNGMHNLTSLQELEIGDL 702 (861)
Q Consensus 678 ~~~~~~~~~~l~~l~~L~~L~l~~n 702 (861)
|.+.+..+..+.++++|++|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC
Confidence 5544444444445555555555554
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=2.1e-11 Score=115.30 Aligned_cols=127 Identities=15% Similarity=0.086 Sum_probs=106.6
Q ss_pred CCCceeEEEEEecCCCccchhhhhcccC-CccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCccc
Q 038705 61 FSENLRHFSYLRGGYDGLKMFEVLSDAK-RLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSI 139 (861)
Q Consensus 61 ~~~~~~~lsl~~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~ 139 (861)
.+.+++++.+.++.+..+ +.+..+. +|++|.+.++. +. .+ +.|..+++|++|++++|.++.+|..+
T Consensus 17 ~~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~--------l~-~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNE--------IR-KL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CTTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSC--------CC-EE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred CcCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCC--------CC-cc-cccccCCCCCEEECCCCcccccCcch
Confidence 356789999999987754 3455555 99999986644 22 23 56999999999999999999997655
Q ss_pred -CCCCccceeeccCCcccccch--hhhccccccEEecCCccchhhchhh----hhhccccceeecCCCc
Q 038705 140 -GDLKHLQYLDLSETKIKTLPE--SVNKLWNLHTLLLENCHRLKKLCAN----MGSLIKLHHLKNSNVK 201 (861)
Q Consensus 140 -~~L~~L~~L~Ls~~~i~~lp~--~i~~L~~L~~L~l~~n~~~~~lp~~----~~~L~~L~~L~l~~~~ 201 (861)
..+++|++|++++|.|+.+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|++++|.
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999999999999999997 79999999999999986 4566764 8999999999999997
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.4e-10 Score=111.24 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=47.3
Q ss_pred cCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEec
Q 038705 597 ALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIY 676 (861)
Q Consensus 597 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 676 (861)
++++|++++| .++.+|..+.++++|+.|++++|.+.+..+..|.++++|++|++++|......|..+..+++|+.|+++
T Consensus 32 ~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4555555555 233444444455555555555555444444444445555555555543333223333444444444444
Q ss_pred cccCcccccccCCCCCccCEEeecCC
Q 038705 677 ECEKLKALPNGMHNLTSLQELEIGDL 702 (861)
Q Consensus 677 ~~~~~~~~~~~l~~l~~L~~L~l~~n 702 (861)
+|.+....+..+..+++|+.|++++|
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCeeChhhhhcCccccEEEeCCC
Confidence 44433222223444444444444444
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=1.9e-10 Score=121.11 Aligned_cols=215 Identities=13% Similarity=0.023 Sum_probs=134.3
Q ss_pred cccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEEEecCC--------CcccccccC
Q 038705 521 LGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLHVKSCG--------NLAFLSLVG 592 (861)
Q Consensus 521 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~--------~l~~l~~~~ 592 (861)
+++|+.+++.++ +..++..+|..+++|+.+++.++. +.. ++...+....+...+..-. .+....+.+
T Consensus 100 ~~~L~~l~L~~~---i~~I~~~aF~~~~~L~~l~l~~n~-i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 100 KQTLEKVILSEK---IKNIEDAAFKGCDNLKICQIRKKT-APN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp CTTCCC-CBCTT---CCEECTTTTTTCTTCCEEEBCCSS-CCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cCCCcEEECCcc---ccchhHHHhhcCcccceEEcCCCC-ccc-cchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 999999999874 457888888999999999999884 333 2222222222222222111 000000000
Q ss_pred CCcccCc-EEeeccccCcchh-hhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCC-CCCCcCC
Q 038705 593 NLPKALK-YLSVDHCLKLKSL-AERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPD-GGFLSST 669 (861)
Q Consensus 593 ~~~~~L~-~L~l~~~~~l~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~ 669 (861)
. ..|+ .+.+.....+... ...-....++..+.+.++-...........+++|+.+++++|. +..+|. .+..+++
T Consensus 175 ~--~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 175 G--EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKY 251 (329)
T ss_dssp S--CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTT
T ss_pred c--cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCC
Confidence 0 1233 4444443332221 1111245677778777653222222222247899999999985 555655 5667899
Q ss_pred ccEEEeccccCcccccccCCCCCccC-EEeecCCCCCcccCCCCC--CCCccEEEecCccCcccccccccCCcCCCcCeE
Q 038705 670 LTKLWIYECEKLKALPNGMHNLTSLQ-ELEIGDLPSMVYFPEDGF--PTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRL 746 (861)
Q Consensus 670 L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~n~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L 746 (861)
|+++++.++ +...-+..|.++++|+ .+++.+ .++.++...| +++|+.++++.+.+....... |.++++|+.|
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~a--F~~~~~L~~l 326 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDEL--FGNGVPSKLI 326 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTT--TCTTCCCCEE
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhh--hcCCcchhhh
Confidence 999999886 3333356789999999 999988 5788877755 889999999888876655444 8999999988
Q ss_pred Ee
Q 038705 747 SI 748 (861)
Q Consensus 747 ~l 748 (861)
+.
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 63
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.17 E-value=1.2e-12 Score=126.63 Aligned_cols=126 Identities=22% Similarity=0.237 Sum_probs=84.5
Q ss_pred hhcccCCccEEeecccccCcCCcccchhhhhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhh
Q 038705 83 VLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESV 162 (861)
Q Consensus 83 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i 162 (861)
.+..+++|++|.+.++. + ..+| .|.++++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~--------l-~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN--------I-EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEE--------E-SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred HHhcCCCCCEEECCCCC--------C-cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 56677777777775433 1 2244 677777777777777777777776777777777777777777776 57
Q ss_pred hccccccEEecCCccchhhch--hhhhhccccceeecCCCcccccCccc----------ccccccccccc
Q 038705 163 NKLWNLHTLLLENCHRLKKLC--ANMGSLIKLHHLKNSNVKALEEMPKG----------IGNLTHLLTLS 220 (861)
Q Consensus 163 ~~L~~L~~L~l~~n~~~~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~~----------i~~l~~L~~L~ 220 (861)
+.+++|++|++++|.+ ..+| ..+..+++|++|++++|.+.+..|.. +..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 7777777777777643 3333 35777777777777777754443332 55666666654
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=3.3e-10 Score=107.21 Aligned_cols=127 Identities=16% Similarity=0.042 Sum_probs=69.1
Q ss_pred CcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEecc
Q 038705 598 LKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYE 677 (861)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 677 (861)
.+.++++++ .++.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 455666555 344444333 25666777766665554455556666677777766643332223345566666666666
Q ss_pred ccCcccccccCCCCCccCEEeecCCCCCcccCCCC--CCCCccEEEecCccCc
Q 038705 678 CEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDG--FPTNLHSLEIRDMKMW 728 (861)
Q Consensus 678 ~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~--~~~~L~~L~l~~~~~~ 728 (861)
|.+.+..+..+..+++|++|++++| .++.++... .+++|++|++++|++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 6655444444566666666666666 344444432 2344555555554443
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=2e-12 Score=125.13 Aligned_cols=110 Identities=21% Similarity=0.209 Sum_probs=91.7
Q ss_pred hhhhccCCCCcccEEEccCccccccCcccCCCCccceeeccCCcccccchhhhccccccEEecCCccchhhchhhhhhcc
Q 038705 111 SVLYMLFKLQRLRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTLPESVNKLWNLHTLLLENCHRLKKLCANMGSLI 190 (861)
Q Consensus 111 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~ 190 (861)
.+|..|..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..++.+++|++|++++|. +..+| .++.++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~ 115 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLV 115 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCC
Confidence 34446889999999999999999998 8999999999999999999999989999999999999985 44566 699999
Q ss_pred ccceeecCCCcccccCc--cccccccccccccceEe
Q 038705 191 KLHHLKNSNVKALEEMP--KGIGNLTHLLTLSRFVV 224 (861)
Q Consensus 191 ~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~ 224 (861)
+|++|++++|. +..++ ..++.+++|++|++..+
T Consensus 116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 99999999998 44444 35778888887765433
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=9.8e-11 Score=110.05 Aligned_cols=102 Identities=24% Similarity=0.205 Sum_probs=76.2
Q ss_pred hhhhhccCCCCcccEEEccCcccccc-CcccCCCCccceeeccCCcccccchh-hhccccccEEecCCccchhhchhhhh
Q 038705 110 HSVLYMLFKLQRLRVLSLRGYSIFHV-PSSIGDLKHLQYLDLSETKIKTLPES-VNKLWNLHTLLLENCHRLKKLCANMG 187 (861)
Q Consensus 110 ~~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~n~~~~~lp~~~~ 187 (861)
..+|..+. ++|++|+|++|.++.+ |..|..+++|++|+|++|+|+.+|.. |+++++|++|++++|.+....+..|.
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 102 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhc
Confidence 35555543 6788899999888887 66788889999999999988888866 68888999999988854443334488
Q ss_pred hccccceeecCCCcccccCcccccccc
Q 038705 188 SLIKLHHLKNSNVKALEEMPKGIGNLT 214 (861)
Q Consensus 188 ~L~~L~~L~l~~~~~~~~~p~~i~~l~ 214 (861)
.+++|++|++++|. +...+..+..+.
T Consensus 103 ~l~~L~~L~L~~N~-~~c~~~~~~~l~ 128 (174)
T 2r9u_A 103 NLKSLTHIYLYNNP-WDCECRDIMYLR 128 (174)
T ss_dssp TCTTCSEEECCSSC-BCTTBGGGHHHH
T ss_pred cccCCCEEEeCCCC-cccccccHHHHH
Confidence 88899999998888 444444444333
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=1.3e-10 Score=108.90 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=48.4
Q ss_pred CcccEEEccCcccccc-CcccCCCCccceeeccCCcccccchh-hhccccccEEecCCccchhhchhhhhhccccceeec
Q 038705 120 QRLRVLSLRGYSIFHV-PSSIGDLKHLQYLDLSETKIKTLPES-VNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKN 197 (861)
Q Consensus 120 ~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l 197 (861)
+.|++|+|++|.|+.+ |..|..+++|++|+|++|+|+.+|.. |+++++|++|++++|.+.+..|..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 5566666666666655 44556666666666666666665544 456666666666665433333334566666666666
Q ss_pred CCCc
Q 038705 198 SNVK 201 (861)
Q Consensus 198 ~~~~ 201 (861)
++|.
T Consensus 110 ~~N~ 113 (170)
T 3g39_A 110 LNNP 113 (170)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6665
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.07 E-value=1e-09 Score=103.80 Aligned_cols=113 Identities=14% Similarity=0.016 Sum_probs=90.5
Q ss_pred CcccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEE
Q 038705 594 LPKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKL 673 (861)
Q Consensus 594 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 673 (861)
++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 34579999999996554444567889999999999998877667778899999999999996554444456778999999
Q ss_pred EeccccCcccccccCCCCCccCEEeecCCCCCc
Q 038705 674 WIYECEKLKALPNGMHNLTSLQELEIGDLPSMV 706 (861)
Q Consensus 674 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~ 706 (861)
++++|.+.+..+..+..+++|++|++++|+...
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999998765545556889999999999996443
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=1.6e-10 Score=108.57 Aligned_cols=101 Identities=22% Similarity=0.315 Sum_probs=85.5
Q ss_pred ccEEEccCccccccCcccCCCCccceeeccCCccccc-chhhhccccccEEecCCccchhhchhhhhhccccceeecCCC
Q 038705 122 LRVLSLRGYSIFHVPSSIGDLKHLQYLDLSETKIKTL-PESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNV 200 (861)
Q Consensus 122 L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~i~~l-p~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~ 200 (861)
-++++++++.++.+|..+. .+|++|+|++|.|+.+ |..|+++++|++|+|++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3789999999999999876 8999999999999988 456999999999999999655444445789999999999999
Q ss_pred cccccCccc-cccccccccccceEec
Q 038705 201 KALEEMPKG-IGNLTHLLTLSRFVVG 225 (861)
Q Consensus 201 ~~~~~~p~~-i~~l~~L~~L~~~~~~ 225 (861)
. +..+|.. ++.+++|++|++..+.
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred c-cceeCHHHhccccCCCEEEeCCCC
Confidence 9 5566655 8999999999776554
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.99 E-value=4.9e-08 Score=104.75 Aligned_cols=211 Identities=12% Similarity=0.137 Sum_probs=100.0
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+|+.+.+..+ +......+|.++ +|+.+.+.++ +..+...+|..+++|+.+++.++ .++.+-.......
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~---l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~------ 203 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST---LEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYA------ 203 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT---CCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTC------
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC---ccEehHHHhhCcccCCeeecCCC-cceEechhhEeec------
Confidence 4555555443 333333455553 4666666542 34455555566666666666554 2222111111112
Q ss_pred EecCCCcccccccCCCcccCcEEeeccccCcchh-hhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCc
Q 038705 579 VKSCGNLAFLSLVGNLPKALKYLSVDHCLKLKSL-AERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNL 657 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 657 (861)
+|+.+.+..+ +..+ ...|.++++|+.+++..+ +...-..+|.+ .+|+.+.+.++ +
T Consensus 204 ------------------~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~--i 259 (401)
T 4fdw_A 204 ------------------GIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG--V 259 (401)
T ss_dssp ------------------CCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT--C
T ss_pred ------------------ccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC--c
Confidence 3444444322 2222 224445555666655542 11122333443 55666666432 3
Q ss_pred eec-CCCCCCcCCccEEEeccccCc-----ccccccCCCCCccCEEeecCCCCCcccCCCCC--CCCccEEEecCccCcc
Q 038705 658 ISF-PDGGFLSSTLTKLWIYECEKL-----KALPNGMHNLTSLQELEIGDLPSMVYFPEDGF--PTNLHSLEIRDMKMWK 729 (861)
Q Consensus 658 ~~~-~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~--~~~L~~L~l~~~~~~~ 729 (861)
..+ ...+..+++|+.+.+.++... ..-+..|.+|++|+.+++.+ .++.++...| +++|+.+++..+ ++
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~ 335 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VT 335 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CC
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--cc
Confidence 333 234445566666666554432 12234556666666666653 2555555544 456666666443 22
Q ss_pred cccccccCCcCCCcCeEEeecC
Q 038705 730 SLIEWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 730 ~~~~~~~~~~l~~L~~L~l~~~ 751 (861)
.+... .|.++ +|+.+++.+|
T Consensus 336 ~I~~~-aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 336 QINFS-AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp EECTT-SSSSS-CCCEEEECCS
T ss_pred EEcHH-hCCCC-CCCEEEEcCC
Confidence 22222 26666 6666666665
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=3.2e-09 Score=99.29 Aligned_cols=103 Identities=13% Similarity=0.050 Sum_probs=66.4
Q ss_pred CcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEecc
Q 038705 598 LKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYE 677 (861)
Q Consensus 598 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 677 (861)
.+.++++++ .++.+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|......+..+..+++|+.|++++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 567777776 4455665543 6777777777777766677777777777777777744333233345667777777777
Q ss_pred ccCcccccccCCCCCccCEEeecCCC
Q 038705 678 CEKLKALPNGMHNLTSLQELEIGDLP 703 (861)
Q Consensus 678 ~~~~~~~~~~l~~l~~L~~L~l~~n~ 703 (861)
|.+.+..+..+..+++|++|++++|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 76554444456667777777776664
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=1.9e-07 Score=100.15 Aligned_cols=208 Identities=12% Similarity=0.166 Sum_probs=96.4
Q ss_pred ccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCC-CCCCcCCccEEEeccccCcccc-cccCCCCCc
Q 038705 616 LDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPD-GGFLSSTLTKLWIYECEKLKAL-PNGMHNLTS 693 (861)
Q Consensus 616 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~ 693 (861)
|.++++|+.+++.+|.+...-...|. +++|+.+.+.++ +..++. .+..+++|+.+++.++ +..+ ...|.+ .+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SG 249 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CC
T ss_pred hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CC
Confidence 44445555555544433322222232 345555555432 222322 3334445555555432 1222 223333 44
Q ss_pred cCEEeecCCCCCcccCCCCC--CCCccEEEecCccCc----ccccccccCCcCCCcCeEEeecCCCccccCCCcccCcCC
Q 038705 694 LQELEIGDLPSMVYFPEDGF--PTNLHSLEIRDMKMW----KSLIEWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLP 767 (861)
Q Consensus 694 L~~L~l~~n~~l~~~~~~~~--~~~L~~L~l~~~~~~----~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 767 (861)
|+.+.+.++ ++.++...| +++|+.+++.++... ..++. ..|.+|++|+.+++.+ .++.++.... .-.
T Consensus 250 L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~~--~i~~I~~~aF--~~c 322 (401)
T 4fdw_A 250 ITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLARFEIPE--SIRILGQGLL--GGN 322 (401)
T ss_dssp CSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCEECCCT--TCCEECTTTT--TTC
T ss_pred ccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCeEEeCC--ceEEEhhhhh--cCC
Confidence 555555332 444444333 455555555544332 11111 2266666666666653 2444444321 112
Q ss_pred CCccEEEeccCCCCcccccCC-CCCCCCCEEeccCCCCcccCCCC---CCccccceeeccCCcchHHHHhccCCcccccc
Q 038705 768 ASLTKLEIVRFSNLEYLSSVG-ESLPSLECLILDDCPKLRYFPDK---GLPPSLLQLHISNCPLIEESCRKDGGQYWHLI 843 (861)
Q Consensus 768 ~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~---~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~ 843 (861)
++|+.+.+-+ +++.++... ..+ +|+.+.+.++ .+..++.. +.+.+++.|.+-.+. +.. ..+. ..|...
T Consensus 323 ~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~-~~~-y~~a--~~W~~f 394 (401)
T 4fdw_A 323 RKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES-VEK-YKNA--NGWRDF 394 (401)
T ss_dssp CSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG-HHH-HHHS--TTGGGG
T ss_pred CCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH-HHH-hhhc--cchhhh
Confidence 4555555532 344444443 566 8888988876 44444432 334678888887654 332 2222 347655
Q ss_pred c
Q 038705 844 S 844 (861)
Q Consensus 844 ~ 844 (861)
+
T Consensus 395 ~ 395 (401)
T 4fdw_A 395 T 395 (401)
T ss_dssp G
T ss_pred h
Confidence 3
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.85 E-value=3.3e-07 Score=98.92 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=75.6
Q ss_pred hccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecC-CCCCCcCCccEEEeccccCcccc-cccCCCCC
Q 038705 615 RLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFP-DGGFLSSTLTKLWIYECEKLKAL-PNGMHNLT 692 (861)
Q Consensus 615 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~ 692 (861)
.+.++..|+.+.+..+. ...-...|..+..++.+..... .++ ..+..+.+|+.+.+.++ +..+ ...|.++.
T Consensus 248 ~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCT 320 (394)
T ss_dssp TTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCT
T ss_pred cccccccceeEEcCCCc-ceeeccccccccccceeccCce----eeccccccccccccccccccc--cceechhhhcCCC
Confidence 44566677777766532 2333455666777777666543 122 23445677777777543 2333 34567777
Q ss_pred ccCEEeecCCCCCcccCCCCC--CCCccEEEecCccCcccccccccCCcCCCcCeEEeecC
Q 038705 693 SLQELEIGDLPSMVYFPEDGF--PTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 693 ~L~~L~l~~n~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 751 (861)
+|+.+++.++ ++.++...| +.+|+.+++..+ ++.+... .|.+|++|+.+++..+
T Consensus 321 ~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 321 SLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-AFQGCINLKKVELPKR 376 (394)
T ss_dssp TCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTT-TBTTCTTCCEEEEEGG
T ss_pred CCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHH-HhhCCCCCCEEEECCC
Confidence 7777777643 666666544 677787777654 3333332 2788888888888664
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=4.4e-09 Score=111.70 Aligned_cols=88 Identities=18% Similarity=0.136 Sum_probs=42.3
Q ss_pred hhhhccCCCCcccEEEccC-ccccccC-cccCCCCccceeeccCCcccccch-hhhccccccEEecCCccchhhchhh-h
Q 038705 111 SVLYMLFKLQRLRVLSLRG-YSIFHVP-SSIGDLKHLQYLDLSETKIKTLPE-SVNKLWNLHTLLLENCHRLKKLCAN-M 186 (861)
Q Consensus 111 ~~~~~~~~l~~L~~L~L~~-~~i~~lp-~~~~~L~~L~~L~Ls~~~i~~lp~-~i~~L~~L~~L~l~~n~~~~~lp~~-~ 186 (861)
.+|. |..+++|++|+|++ |.++.+| ..|+.|.+|++|+|++|.|+.+|. .|++|++|++|+|++|.+. .+|.. +
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHc
Confidence 3444 55555555555553 5555543 345555555555555555554433 3455555555555554322 23322 2
Q ss_pred hhccccceeecCCCc
Q 038705 187 GSLIKLHHLKNSNVK 201 (861)
Q Consensus 187 ~~L~~L~~L~l~~~~ 201 (861)
..+. |+.|++.+|.
T Consensus 101 ~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLS-LQELVLSGNP 114 (347)
T ss_dssp CSCC-CCEEECCSSC
T ss_pred ccCC-ceEEEeeCCC
Confidence 2232 5555555554
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.75 E-value=8.8e-07 Score=95.49 Aligned_cols=298 Identities=11% Similarity=0.059 Sum_probs=168.5
Q ss_pred cccEEEeecccccccchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCCCCccccCCCCCCCCCccEEE
Q 038705 499 SLQYLELSQCRYLVKLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDCASLTSLLPKNELPATLEHLH 578 (861)
Q Consensus 499 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 578 (861)
+|+++.+..+ +......+|.++++|+.+++.++ +..+...++..+.+|+.+.+... ++.+-.....-..+....
T Consensus 72 ~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 72 KVTEIKIPST-VREIGEFAFENCSKLEIINIPDS---VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCCSEEE
T ss_pred CceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC---ceEccchhhcccccchhhcccCc--eeeecceeeecccccccc
Confidence 7888888643 44445567888888888888755 44566666677777776655432 222111110011111111
Q ss_pred EecCCCcccccccCCC--cccCcEEeeccccCcchhhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCC
Q 038705 579 VKSCGNLAFLSLVGNL--PKALKYLSVDHCLKLKSLAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPN 656 (861)
Q Consensus 579 l~~~~~l~~l~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 656 (861)
+ ......+. ...+ .++|+.+.+.++ ....-...+.++.+|+.+++..+ ....-...|.++..|+.+.+..+
T Consensus 146 ~--~~~~~~i~-~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~-- 218 (394)
T 4fs7_A 146 I--PEGVTVIG-DEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS-- 218 (394)
T ss_dssp C--CTTCCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--
T ss_pred c--Cccccccc-hhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--
Confidence 1 11111111 0011 125666666543 11222334556777777777654 22223456667777777776664
Q ss_pred ceecCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCC--CCCCccEEEecCccCccccccc
Q 038705 657 LISFPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDG--FPTNLHSLEIRDMKMWKSLIEW 734 (861)
Q Consensus 657 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~ 734 (861)
...+........+|+.+.+.... ...-...+..+..|+.+.+..+ ...+.... .+..++.+......+ +.
T Consensus 219 ~~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i----~~- 290 (394)
T 4fs7_A 219 LYYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIV----PE- 290 (394)
T ss_dssp CCEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEE----CT-
T ss_pred ceEeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCC--cceeeccccccccccceeccCceee----cc-
Confidence 33344444555677777775432 2222345677888888888765 33444443 366777777665432 21
Q ss_pred ccCCcCCCcCeEEeecCCCccccCCCcccCcCCCCccEEEeccCCCCcccccCC-CCCCCCCEEeccCCCCcccCCCCCC
Q 038705 735 EPLNRFTSLRRLSIHGCQDMVSFPQDNIGMMLPASLTKLEIVRFSNLEYLSSVG-ESLPSLECLILDDCPKLRYFPDKGL 813 (861)
Q Consensus 735 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~ 813 (861)
..+..+.+|+.+.+.++ ++.+.+... .-.++|+.+++-+ +++.++... ..|++|+.+.+.. .++.++...+
T Consensus 291 ~~F~~~~~L~~i~l~~~--i~~I~~~aF--~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF 362 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS--VKFIGEEAF--ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAF 362 (394)
T ss_dssp TTTTTCTTCCEEEECTT--CCEECTTTT--TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTB
T ss_pred ccccccccccccccccc--cceechhhh--cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHh
Confidence 23778889999888654 556654321 1235677777643 466666554 7788999998864 3777766444
Q ss_pred --ccccceeeccCC
Q 038705 814 --PPSLLQLHISNC 825 (861)
Q Consensus 814 --~~sL~~L~l~~c 825 (861)
+.+|+.+++..+
T Consensus 363 ~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 363 QGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEEEEEGG
T ss_pred hCCCCCCEEEECCC
Confidence 578888888654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=1.9e-07 Score=98.96 Aligned_cols=100 Identities=20% Similarity=0.132 Sum_probs=49.7
Q ss_pred eeccccCcchhhhhccCCCCccEEeecc-ccCcccccccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccC
Q 038705 602 SVDHCLKLKSLAERLDNNSSLEAVKISY-CENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEK 680 (861)
Q Consensus 602 ~l~~~~~l~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 680 (861)
+.+++..+..+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|...+..|..+..+++|+.|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 4444323444555 55555555555554 444444445555555555555555544443344444555555555555554
Q ss_pred cccccccCCCCCccCEEeecCCC
Q 038705 681 LKALPNGMHNLTSLQELEIGDLP 703 (861)
Q Consensus 681 ~~~~~~~l~~l~~L~~L~l~~n~ 703 (861)
.+..+..+..++ |+.|++.+|+
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSSC
T ss_pred ceeCHHHcccCC-ceEEEeeCCC
Confidence 332223333333 5555555553
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.52 E-value=1.9e-08 Score=106.80 Aligned_cols=155 Identities=18% Similarity=0.102 Sum_probs=99.3
Q ss_pred CCceeEEEEEecCCCccchhhhhcc-----cCCccEEeecccccCcCCcccchhhhhhc-cCCCCcccEEEccCcccccc
Q 038705 62 SENLRHFSYLRGGYDGLKMFEVLSD-----AKRLRTFLPLVLSNTWSGKAYLAHSVLYM-LFKLQRLRVLSLRGYSIFHV 135 (861)
Q Consensus 62 ~~~~~~lsl~~~~~~~~~~~~~~~~-----~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~i~~l 135 (861)
...++.+++.++.+.... ...+.. .++|+.|.+.++. +....... +..+++|++|+|++|.++..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~~L~~L~Ls~n~--------l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK-CTVVAAVLGSGRHALDEVNLASCQ--------LDPAGLRTLLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp HTTCCEEECTTSCCCHHH-HHHHHHHHSSCSSCEEEEECTTCC--------CCHHHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred HhhCCEEEecCCCCCHHH-HHHHHHHHhhCCCCceEEEecCCC--------CCHHHHHHHHHHHHhccHhhcCCCCCCHH
Confidence 456788888887765321 222222 2688888875533 33333444 45567788888888887643
Q ss_pred -----Cccc-CCCCccceeeccCCcccc-----cchhhhccccccEEecCCccchh----hchhhhhhccccceeecCCC
Q 038705 136 -----PSSI-GDLKHLQYLDLSETKIKT-----LPESVNKLWNLHTLLLENCHRLK----KLCANMGSLIKLHHLKNSNV 200 (861)
Q Consensus 136 -----p~~~-~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~l~~n~~~~----~lp~~~~~L~~L~~L~l~~~ 200 (861)
...+ ....+|++|+|++|.|+. ++..+..+++|++|||++|.+.. .++..+...++|++|++++|
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 2223 346788888888888763 45556778888888888886543 23555677778888888888
Q ss_pred cccc----cCccccccccccccccceEec
Q 038705 201 KALE----EMPKGIGNLTHLLTLSRFVVG 225 (861)
Q Consensus 201 ~~~~----~~p~~i~~l~~L~~L~~~~~~ 225 (861)
.+.. .++..+...++|++|++..+.
T Consensus 222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 7432 223334556777777665543
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.48 E-value=8.2e-06 Score=87.84 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=61.3
Q ss_pred cccccCCCCCcEEeeccCCCceecCCCCCCcCCccEEEeccccCcccc-cccCCCCCccCEEeecCCCCCcccCCCCC--
Q 038705 637 PDGLLKLNHLQEIFISHCPNLISFPDGGFLSSTLTKLWIYECEKLKAL-PNGMHNLTSLQELEIGDLPSMVYFPEDGF-- 713 (861)
Q Consensus 637 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~~l~~~~~~~~-- 713 (861)
..+|.++.+|+.+.+.+. ....-...+..+++|+.+.+.. . +..+ ...|.++.+|+.++|..+ ++.+....|
T Consensus 258 ~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~ 332 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG--ITQILDDAFAG 332 (394)
T ss_dssp TTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT
T ss_pred cceeeecccccEEecccc-cceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc--ccEehHhHhhC
Confidence 345666777777777654 2222223445566777777742 2 2233 345677777777777654 566655544
Q ss_pred CCCccEEEecCccCcccccccccCCcCCCcCeEEeecC
Q 038705 714 PTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 714 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 751 (861)
|.+|+.+.+..+ ++.+... .|.+|++|+.+++.++
T Consensus 333 C~~L~~i~ip~s--v~~I~~~-aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 333 CEQLERIAIPSS--VTKIPES-AFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTTCCEEEECTT--CCBCCGG-GGTTCTTCCEEEESSC
T ss_pred CCCCCEEEECcc--cCEEhHh-HhhCCCCCCEEEECCc
Confidence 567777777543 2233322 2777777777777665
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=9.8e-08 Score=101.38 Aligned_cols=134 Identities=14% Similarity=0.051 Sum_probs=99.7
Q ss_pred CceeEEEEEecCCCccchhhhhcccCCccEEeecccccCcCCcccchhhhhhc----c-CCCCcccEEEccCccccc---
Q 038705 63 ENLRHFSYLRGGYDGLKMFEVLSDAKRLRTFLPLVLSNTWSGKAYLAHSVLYM----L-FKLQRLRVLSLRGYSIFH--- 134 (861)
Q Consensus 63 ~~~~~lsl~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~----~-~~l~~L~~L~L~~~~i~~--- 134 (861)
..++++.+..|.+.......-...+++|+.|.+.++. +....... + ...+.|++|+|++|.++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~--------l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~ 172 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS--------LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGV 172 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC--------CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC--------CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHH
Confidence 6899999999987543222223356789999986643 33322222 2 457889999999999864
Q ss_pred --cCcccCCCCccceeeccCCcccc-----cchhhhccccccEEecCCccchh----hchhhhhhccccceeecCCCccc
Q 038705 135 --VPSSIGDLKHLQYLDLSETKIKT-----LPESVNKLWNLHTLLLENCHRLK----KLCANMGSLIKLHHLKNSNVKAL 203 (861)
Q Consensus 135 --lp~~~~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~l~~n~~~~----~lp~~~~~L~~L~~L~l~~~~~~ 203 (861)
++..+...++|++|+|++|.|+. ++..+...++|++|+|++|.+.. .++..+...++|++|++++|.+.
T Consensus 173 ~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 173 AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 56667889999999999999873 45668888999999999997654 34455667799999999999844
Q ss_pred c
Q 038705 204 E 204 (861)
Q Consensus 204 ~ 204 (861)
.
T Consensus 253 ~ 253 (372)
T 3un9_A 253 S 253 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.37 E-value=7.7e-05 Score=80.16 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=84.1
Q ss_pred hhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCC-CCCCcCCccEEEeccccCcccc-cccCCCC
Q 038705 614 ERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPD-GGFLSSTLTKLWIYECEKLKAL-PNGMHNL 691 (861)
Q Consensus 614 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l 691 (861)
..+.++..|+.+.+.... ...-...|.++++|+.+.+.. .+..++. .+..+.+|+.+.|..+ +..+ ...|.+|
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C 333 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred ceeeecccccEEeccccc-ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCC
Confidence 356678888888886532 233356778899999999875 3555655 4556889999999753 3333 4578999
Q ss_pred CccCEEeecCCCCCcccCCCCC--CCCccEEEecCccCcccccccccCCcCCCcCeEEeecC
Q 038705 692 TSLQELEIGDLPSMVYFPEDGF--PTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGC 751 (861)
Q Consensus 692 ~~L~~L~l~~n~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 751 (861)
.+|+.+.+..+ ++.+....| |++|+.+++.++.... . .+..+..|+.+.+..+
T Consensus 334 ~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~---~--~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 334 EQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW---N--AISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH---H--TCBCCCCC--------
T ss_pred CCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh---h--hhhccCCCCEEEeCCC
Confidence 99999999764 777776644 7899999998765322 1 2677788888887654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=1e-06 Score=92.57 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=30.1
Q ss_pred cCCccEEEeccccCccccccc---CCCCCccCEEeecCCCCCcc-----cCCC-CCCCCccEEEecCccCcc
Q 038705 667 SSTLTKLWIYECEKLKALPNG---MHNLTSLQELEIGDLPSMVY-----FPED-GFPTNLHSLEIRDMKMWK 729 (861)
Q Consensus 667 ~~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~n~~l~~-----~~~~-~~~~~L~~L~l~~~~~~~ 729 (861)
+|+|+.|++.+|.+....+.. ...+++|++|+|+.| .++. ++.. ..+++|+.|++++|.+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 455555555555543221111 123556666666655 3332 1111 224567777777776544
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=4.4e-07 Score=83.12 Aligned_cols=96 Identities=10% Similarity=0.065 Sum_probs=65.0
Q ss_pred cCCCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCC--C----CCCCccEEEecCccCcccccc
Q 038705 660 FPDGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPED--G----FPTNLHSLEIRDMKMWKSLIE 733 (861)
Q Consensus 660 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~--~----~~~~L~~L~l~~~~~~~~~~~ 733 (861)
+|.....-..|++|++++|.+...-...+.++++|++|++++|..++.-.-. . .+++|++|+|++|..+++..-
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 3443323346888888888755544455678888999999988776652211 1 134788899988876665433
Q ss_pred cccCCcCCCcCeEEeecCCCccc
Q 038705 734 WEPLNRFTSLRRLSIHGCQDMVS 756 (861)
Q Consensus 734 ~~~~~~l~~L~~L~l~~~~~~~~ 756 (861)
.. +..+++|+.|+|++|+.++.
T Consensus 133 ~~-L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IA-LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HH-GGGCTTCCEEEEESCTTCCC
T ss_pred HH-HhcCCCCCEEECCCCCCCCc
Confidence 32 67789999999999987765
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.14 E-value=0.0004 Score=74.13 Aligned_cols=103 Identities=13% Similarity=0.032 Sum_probs=42.7
Q ss_pred ccCCCCCcEEeeccCCCceecC-CCCCCcCCccEEEeccccCcccccccCCCCCccCEEeecCCCCCcccCCCCC--CCC
Q 038705 640 LLKLNHLQEIFISHCPNLISFP-DGGFLSSTLTKLWIYECEKLKALPNGMHNLTSLQELEIGDLPSMVYFPEDGF--PTN 716 (861)
Q Consensus 640 ~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~l~~~~~~~~--~~~ 716 (861)
+..+.+|+.+.+..+ +..+. ..+..+..|+.+.+..+ ....-...+.++.+|+.+.+..+ +..++...| +++
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTT
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccc
Confidence 334445555554432 22222 22334455555555432 11111233445555555555432 344443322 445
Q ss_pred ccEEEecCccCcccccccccCCcCCCcCeEEee
Q 038705 717 LHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIH 749 (861)
Q Consensus 717 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 749 (861)
|+.+.+.++.+...... .|.+|.+|+.+.+.
T Consensus 288 L~~i~l~~~~i~~I~~~--aF~~c~~L~~i~lp 318 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPR--VFMDCVKLSSVTLP 318 (379)
T ss_dssp CCEEEECCTTCCEECTT--TTTTCTTCCEEECC
T ss_pred cccccccccccceehhh--hhcCCCCCCEEEcC
Confidence 55555544333221111 15555555555553
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.13 E-value=0.00069 Score=72.30 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=68.9
Q ss_pred ccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCC-CCCCcCCccEEEeccccCcccc-cccCCCCCc
Q 038705 616 LDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPD-GGFLSSTLTKLWIYECEKLKAL-PNGMHNLTS 693 (861)
Q Consensus 616 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~ 693 (861)
+..+.+|+.+.+..+ ....-...+.++..|+.+.+..+ +..+.. .+..+.+|+.+.+..+ +..+ ...+.++++
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccc
Confidence 334455555555432 12222344555666666666553 333332 3344566666666432 2222 234566666
Q ss_pred cCEEeecCCCCCcccCCCCC--CCCccEEEecCccCcccccccccCCcCCCcCeEEeecCCCccccCC
Q 038705 694 LQELEIGDLPSMVYFPEDGF--PTNLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMVSFPQ 759 (861)
Q Consensus 694 L~~L~l~~n~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 759 (861)
|+.+.+.++ .++.++...| +.+|+.+++..+ ++.+... .|.+|.+|+.+.+..+ ++.|..
T Consensus 288 L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-aF~~C~~L~~i~ip~~--v~~I~~ 349 (379)
T 4h09_A 288 LTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQVY-AFKNCKALSTISYPKS--ITLIES 349 (379)
T ss_dssp CCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTT-TTTTCTTCCCCCCCTT--CCEECT
T ss_pred ccccccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHHH-HhhCCCCCCEEEECCc--cCEEch
Confidence 666666554 4555555544 566676666533 2333322 2777788887777543 555544
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=1.3e-06 Score=91.69 Aligned_cols=136 Identities=18% Similarity=0.145 Sum_probs=66.0
Q ss_pred hhhhccCCCCccEEeeccccCcccccccccCCCCCcEEeeccCCCceecCCCC--CCcCCccEEEeccc--cC-----cc
Q 038705 612 LAERLDNNSSLEAVKISYCENLIVLPDGLLKLNHLQEIFISHCPNLISFPDGG--FLSSTLTKLWIYEC--EK-----LK 682 (861)
Q Consensus 612 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~l~~~--~~-----~~ 682 (861)
+...+..+|+|+.|.|++|.... ++. + .+++|++|++..|.........+ ..+|+|+.|+|+.+ .. ..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 33444556777777776653222 222 2 26677777776664322211111 14567777776421 10 11
Q ss_pred cccccC--CCCCccCEEeecCCCCCcc----cCCCCCCCCccEEEecCccCcccc----cccccCCcCCCcCeEEeecCC
Q 038705 683 ALPNGM--HNLTSLQELEIGDLPSMVY----FPEDGFPTNLHSLEIRDMKMWKSL----IEWEPLNRFTSLRRLSIHGCQ 752 (861)
Q Consensus 683 ~~~~~l--~~l~~L~~L~l~~n~~l~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~ 752 (861)
.+...+ ..+++|+.|++.+|..... +.....+++|++|+++.|.+.... ... +..+++|+.|++++|.
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~--L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH--VDKIKHLKFINMKYNY 318 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT--HHHHTTCSEEECCSBB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh--cccCCcceEEECCCCc
Confidence 111112 2466777777766632211 111123566777777666554421 111 2445666677766663
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=7.6e-07 Score=81.51 Aligned_cols=90 Identities=13% Similarity=0.301 Sum_probs=44.6
Q ss_pred CccEEEecCccCcccccccccCCcCCCcCeEEeecCCCccccCCCcccCc--CCCCccEEEeccCCCCcccccCC-CCCC
Q 038705 716 NLHSLEIRDMKMWKSLIEWEPLNRFTSLRRLSIHGCQDMVSFPQDNIGMM--LPASLTKLEIVRFSNLEYLSSVG-ESLP 792 (861)
Q Consensus 716 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~-~~~~ 792 (861)
.|+.||+++|.++...... +..+++|+.|++++|..+++-.-...+.. ..++|+.|++++|.+++.-+... ..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 5777777777644433333 67788888888888876544211110000 00134444444444443322211 3345
Q ss_pred CCCEEeccCCCCccc
Q 038705 793 SLECLILDDCPKLRY 807 (861)
Q Consensus 793 ~L~~L~l~~c~~l~~ 807 (861)
+|++|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 555555555554443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.06 E-value=3.6e-06 Score=79.53 Aligned_cols=116 Identities=10% Similarity=0.022 Sum_probs=75.2
Q ss_pred hhhcccCCccEEeeccc-ccCcCCcccchhhhhhccCCCCcccEEEccCccccc-----cCcccCCCCccceeeccCCcc
Q 038705 82 EVLSDAKRLRTFLPLVL-SNTWSGKAYLAHSVLYMLFKLQRLRVLSLRGYSIFH-----VPSSIGDLKHLQYLDLSETKI 155 (861)
Q Consensus 82 ~~~~~~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~~~i 155 (861)
..+...+.|++|.+.++ .- ...-...+...+...+.|++|+|++|.|+. +...+...+.|++|+|++|.|
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i----~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNI----PVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTC----CHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHhcCCCCCEEEecCCCCC----CHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 34556788888877654 20 001112233336777888888888888763 445566667888888888887
Q ss_pred cc-----cchhhhccccccEEec--CCccchhh----chhhhhhccccceeecCCCc
Q 038705 156 KT-----LPESVNKLWNLHTLLL--ENCHRLKK----LCANMGSLIKLHHLKNSNVK 201 (861)
Q Consensus 156 ~~-----lp~~i~~L~~L~~L~l--~~n~~~~~----lp~~~~~L~~L~~L~l~~~~ 201 (861)
.. +...+...+.|++|++ ++|.+... +...+...++|++|++++|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 73 4556777778888888 66654433 33445556788888888887
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=5.5e-06 Score=82.17 Aligned_cols=104 Identities=18% Similarity=0.134 Sum_probs=53.4
Q ss_pred cCCCCcccE--EEccCccccccCcc----cCCCCccceeeccCCccccc---chhhhccccccEEecCCccchhhchhhh
Q 038705 116 LFKLQRLRV--LSLRGYSIFHVPSS----IGDLKHLQYLDLSETKIKTL---PESVNKLWNLHTLLLENCHRLKKLCANM 186 (861)
Q Consensus 116 ~~~l~~L~~--L~L~~~~i~~lp~~----~~~L~~L~~L~Ls~~~i~~l---p~~i~~L~~L~~L~l~~n~~~~~lp~~~ 186 (861)
|...+.|+. ++++.|....++.. ..++++|++|+|++|.|+.+ |..++.+++|++|+|++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 333444444 45555543322221 13456666666666666543 24455666666666666643322 223
Q ss_pred hhcc--ccceeecCCCcccccCcc-------ccccccccccccc
Q 038705 187 GSLI--KLHHLKNSNVKALEEMPK-------GIGNLTHLLTLSR 221 (861)
Q Consensus 187 ~~L~--~L~~L~l~~~~~~~~~p~-------~i~~l~~L~~L~~ 221 (861)
..++ +|++|++++|.+.+.+|. .+..+++|+.|+.
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 3444 666666666665444442 2455666666654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=1.9e-06 Score=85.50 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=66.0
Q ss_pred cCCCCcccEEEccCcccccc---CcccCCCCccceeeccCCcccccchhhhccc--cccEEecCCccchhhch-------
Q 038705 116 LFKLQRLRVLSLRGYSIFHV---PSSIGDLKHLQYLDLSETKIKTLPESVNKLW--NLHTLLLENCHRLKKLC------- 183 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~Ls~~~i~~lp~~i~~L~--~L~~L~l~~n~~~~~lp------- 183 (861)
...+++|++|+|++|.|+.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|+.|+|++|.+.+..|
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46788999999999998865 45667999999999999999977 4466666 99999999998776555
Q ss_pred hhhhhccccceeec
Q 038705 184 ANMGSLIKLHHLKN 197 (861)
Q Consensus 184 ~~~~~L~~L~~L~l 197 (861)
..+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23678999998864
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=3.8e-06 Score=79.31 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=81.2
Q ss_pred hccCCCCcccEEEccCc-ccc-----ccCcccCCCCccceeeccCCcccc-----cchhhhccccccEEecCCccchhh-
Q 038705 114 YMLFKLQRLRVLSLRGY-SIF-----HVPSSIGDLKHLQYLDLSETKIKT-----LPESVNKLWNLHTLLLENCHRLKK- 181 (861)
Q Consensus 114 ~~~~~l~~L~~L~L~~~-~i~-----~lp~~~~~L~~L~~L~Ls~~~i~~-----lp~~i~~L~~L~~L~l~~n~~~~~- 181 (861)
..+...+.|++|+|++| .+. .+...+...++|++|+|++|.|.. +...+...+.|++|+|++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 33888999999999999 876 356677888999999999999873 455677789999999999965433
Q ss_pred ---chhhhhhccccceeec--CCCccccc----Cccccccccccccccc
Q 038705 182 ---LCANMGSLIKLHHLKN--SNVKALEE----MPKGIGNLTHLLTLSR 221 (861)
Q Consensus 182 ---lp~~~~~L~~L~~L~l--~~~~~~~~----~p~~i~~l~~L~~L~~ 221 (861)
+...+...++|++|++ ++|.+... +...+...++|++|++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEec
Confidence 4556777789999999 77874322 2233444566776654
No 161
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.09 E-value=0.00017 Score=80.91 Aligned_cols=46 Identities=9% Similarity=0.173 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhCCCCcccCC-CCCceEEchhHHHHHHHHhccceE
Q 038705 1 MEDLGRKFFRDLHAKSFFQQSSC-DTSRFVMHHLINDLAQWAAGDIYF 47 (861)
Q Consensus 1 ~ed~g~~~~~~L~~~~ll~~~~~-~~~~~~mHdlv~d~a~~~~~~~~~ 47 (861)
+||+|+ ||++|+++||+++... ....|+|||+|||+|++++++++.
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 478888 9999999999998653 456899999999999999988664
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.63 E-value=0.0023 Score=55.76 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=44.9
Q ss_pred cEEEccCcccc--ccCcccCCCCccceeeccCCcccccchh-hhccccccEEecCCccc
Q 038705 123 RVLSLRGYSIF--HVPSSIGDLKHLQYLDLSETKIKTLPES-VNKLWNLHTLLLENCHR 178 (861)
Q Consensus 123 ~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~i~~lp~~-i~~L~~L~~L~l~~n~~ 178 (861)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. |..+.+|++|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47888899888 8887664 4689999999999999866 78889999999998754
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.85 E-value=0.04 Score=51.27 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=31.0
Q ss_pred cCCCCcccEEEccCcccc-----ccCcccCCCCccceeeccCCccc-----ccchhhhccccccEEecCC
Q 038705 116 LFKLQRLRVLSLRGYSIF-----HVPSSIGDLKHLQYLDLSETKIK-----TLPESVNKLWNLHTLLLEN 175 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~l~~ 175 (861)
+..-+.|+.|+|++|.|. .+.+.+..-+.|++|+|++|.|. .+-+.+..-+.|+.|+|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 455555666666666554 22334444455666666666554 1223344444566666654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.67 E-value=0.031 Score=52.07 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=64.7
Q ss_pred cCCCCcccEEEccCc-ccc-----ccCcccCCCCccceeeccCCccc-----ccchhhhccccccEEecCCccchhh---
Q 038705 116 LFKLQRLRVLSLRGY-SIF-----HVPSSIGDLKHLQYLDLSETKIK-----TLPESVNKLWNLHTLLLENCHRLKK--- 181 (861)
Q Consensus 116 ~~~l~~L~~L~L~~~-~i~-----~lp~~~~~L~~L~~L~Ls~~~i~-----~lp~~i~~L~~L~~L~l~~n~~~~~--- 181 (861)
+..-+.|+.|+|+++ .|. .+-+++..-+.|+.|+|++|.|. .+-+.+..-+.|++|+|++|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 566778999999986 665 35677888899999999999987 3445577889999999999865433
Q ss_pred -chhhhhhccccceeecCCCc
Q 038705 182 -LCANMGSLIKLHHLKNSNVK 201 (861)
Q Consensus 182 -lp~~~~~L~~L~~L~l~~~~ 201 (861)
+-+.+..=+.|++|+++++.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHhhCCceeEEECCCCc
Confidence 22334445679999998653
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.76 E-value=0.047 Score=47.29 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=43.3
Q ss_pred ceeeccCCccc--ccchhhhccccccEEecCCccchhhchhhhhhccccceeecCCCc
Q 038705 146 QYLDLSETKIK--TLPESVNKLWNLHTLLLENCHRLKKLCANMGSLIKLHHLKNSNVK 201 (861)
Q Consensus 146 ~~L~Ls~~~i~--~lp~~i~~L~~L~~L~l~~n~~~~~lp~~~~~L~~L~~L~l~~~~ 201 (861)
.+++-++++++ .+|..+. .+|++|+|++|.+...-+..|..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 47888999998 8987643 469999999986444444557889999999999997
No 166
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.99 E-value=0.12 Score=64.53 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCCCcccC-CCCCceEEchhHHHHHHHHhccce
Q 038705 2 EDLGRKFFRDLHAKSFFQQSS-CDTSRFVMHHLINDLAQWAAGDIY 46 (861)
Q Consensus 2 ed~g~~~~~~L~~~~ll~~~~-~~~~~~~mHdlv~d~a~~~~~~~~ 46 (861)
++.+++++++|+++||++... +....|+|||+||++|+..+.++.
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 578999999999999999754 334469999999999999987753
No 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=83.20 E-value=0.58 Score=54.84 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCCcccCCCCCceEEchhHHHHHH
Q 038705 3 DLGRKFFRDLHAKSFFQQSSCDTSRFVMHHLINDLAQ 39 (861)
Q Consensus 3 d~g~~~~~~L~~~~ll~~~~~~~~~~~mHdlv~d~a~ 39 (861)
+.|+++|++|+++|||+.. +....|+|||+++|++.
T Consensus 402 edAe~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEe-CCCCEEEehHHHHHHhc
Confidence 4689999999999999985 34568999999999663
No 168
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=82.13 E-value=0.77 Score=51.74 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCCcccC-CCCCceEEchhHHHHHHHHhc
Q 038705 3 DLGRKFFRDLHAKSFFQQSS-CDTSRFVMHHLINDLAQWAAG 43 (861)
Q Consensus 3 d~g~~~~~~L~~~~ll~~~~-~~~~~~~mHdlv~d~a~~~~~ 43 (861)
+.+++++++|+++||++... +....|+|||+||+++...+.
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 46789999999999998643 334579999999999988743
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.39 E-value=51 Score=26.33 Aligned_cols=43 Identities=14% Similarity=0.036 Sum_probs=31.1
Q ss_pred cchhhhhccccccEEEEecccccccccccccccCCCCccEEEecCC
Q 038705 513 KLPQALLSLGFLREMEIYGNLIKEESIQSSSTRYTSLLEYLYIDDC 558 (861)
Q Consensus 513 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 558 (861)
+...+|.++.+|+.+.|-.+ +..+...+|..+.+|+.+.+...
T Consensus 11 I~~~aF~~c~~L~~i~iP~~---v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN---IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT---SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ecHHHhcCCCCCcEEEcCCc---hheEcHHHHhccCCccEEEEcCC
Confidence 34457888888888888765 45666777777788888777654
Done!