BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038706
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NV4|A Chain A, Crystal Structure Of Upf0066 Protein Af0241 In Complex
With S-Adenosylmethionine. Northeast Structural Genomics
Consortium Target Gr27
pdb|2NV4|B Chain B, Crystal Structure Of Upf0066 Protein Af0241 In Complex
With S-Adenosylmethionine. Northeast Structural Genomics
Consortium Target Gr27
Length = 147
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 82 SAYKLQNDTDLPGKYSDN-SQIRVLSAESGRIHRFDGIKHTWLL 124
S +K QND G++SD S+I + + +H+ + ++H +L
Sbjct: 11 SPFKTQNDAPRQGRFSDAVSEIAIFDEYADGLHKIENLRHIIVL 54
>pdb|1INY|A Chain A, A Sialic Acid Derived Phosphonate Analog Inhibits
Different Strains Of Influenza Virus Neuraminidase With
Different Efficiencies
Length = 388
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 71 DPGILIEPDKISAYKLQNDTDLPGKYS-----DNSQIRVL 105
+P + +PD+ Y L T + GK+S D SQ R L
Sbjct: 38 EPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRAL 77
>pdb|6NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 71 DPGILIEPDKISAYKLQNDTDLPGKYS-----DNSQIRVL 105
+P + +PD+ Y L T + GK+S D SQ R L
Sbjct: 38 EPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRAL 77
>pdb|1XOE|A Chain A, N9 Tern Influenza Neuraminidase Complexed With
(2r,4r,5r)-5-(1-
Acetylamino-3-Methyl-Butyl-Pyrrolidine-2,
4-Dicarobyxylic Acid 4- Methyl Esterdase Complexed With
pdb|1XOG|A Chain A, N9 Tern Influenza Neuraminidase Complexed With A
2,5-Disubstituted Tetrahydrofuran-5-Carboxylic Acid
pdb|1NNB|A Chain A, Three-Dimensional Structure Of Influenza A N9
Neuraminidase And Its Complex With The Inhibitor 2-Deoxy
2,3-Dehydro-N-Acetyl Neuraminic Acid
pdb|1NNA|A Chain A, Three-dimensional Structure Of Influenza A N9
Neuraminidase And Its Complex With The Inhibitor 2-deoxy
2,3-dehydro-n-acetyl Neuraminic Acid
Length = 387
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 71 DPGILIEPDKISAYKLQNDTDLPGKYS-----DNSQIRVL 105
+P + +PD+ Y L T + GK+S D SQ R L
Sbjct: 37 EPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRAL 76
>pdb|4NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 71 DPGILIEPDKISAYKLQNDTDLPGKYS-----DNSQIRVL 105
+P + +PD+ Y L T + GK+S D SQ R L
Sbjct: 38 EPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRAL 77
>pdb|1L7H|A Chain A, Crystal Structure Of R292k Mutant Influenza Virus
Neuraminidase In Complex With Bcx-1812
pdb|2QWA|A Chain A, The X-ray Structure Of A Drug Resistant Variant R292k Of
Tern N9 Influenza Virus Neuraminidase
pdb|2QWB|A Chain A, The X-ray Structure Of A Complex Of Sialic Acid And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWC|A Chain A, The X-Ray Structure Of A Complex Of Neu5ac2en And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWD|A Chain A, The X-Ray Structure Of A Complex Of 4-Amino-Neu5ac2en And
A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
pdb|2QWE|A Chain A, The X-ray Structure Of A Complex Of 4-guanidino-neu5ac2en
And A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
pdb|2QWF|A Chain A, The X-Ray Structure Of A Complex Of
N-Acetyl-4-Guanidino-6-
Methyl(Propyl)carboxamide-4,
5-Dihydro-2h-Pyran-2-Carboxylic Acid And A Drug
Resistant Variant R292k Of Tern N9 Influenza Virus
Neuraminidase
pdb|2QWG|A Chain A, The X-Ray Structure Of A Complex Of 5-N-Acetyl-4-Amino-6-
Diethylcarboxamide-4,5-Dihydro-2h-Pyran-2-Carboxylic
Acid And A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|2QWH|A Chain A, The X-Ray Structure Of A Complex Of
5-N-Acetyl-5-Amino-3-(1-
Ethylpropoxy)-1-Cyclohexene-1-Carboxylic Acid (Gs4071)
And A Drug Resistant Variant R292k Of Tern N9 Influenza
Virus Neuraminidase
Length = 388
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 71 DPGILIEPDKISAYKLQNDTDLPGKYS-----DNSQIRVL 105
+P + +PD+ Y L T + GK+S D SQ R L
Sbjct: 38 EPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRAL 77
>pdb|5NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 71 DPGILIEPDKISAYKLQNDTDLPGKYS-----DNSQIRVL 105
+P + +PD+ Y L T + GK+S D SQ R L
Sbjct: 38 EPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRAL 77
>pdb|3NN9|A Chain A, Refined Atomic Structures Of N9 Subtype Influenza Virus
Neuraminidase And Escape Mutants
Length = 388
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 71 DPGILIEPDKISAYKLQNDTDLPGKYS-----DNSQIRVL 105
+P + +PD+ Y L T + GK+S D SQ R L
Sbjct: 38 EPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRAL 77
>pdb|1NCA|N Chain N, Refined Crystal Structure Of The Influenza Virus N9
Neuraminidase-Nc41 Fab Complex
pdb|4DGR|A Chain A, Influenza Subtype 9 Neuraminidase Benzoic Acid Inhibitor
Complex
Length = 389
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 71 DPGILIEPDKISAYKLQNDTDLPGKYS-----DNSQIRVL 105
+P + +PD+ Y L T + GK+S D SQ R L
Sbjct: 39 EPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRAL 78
>pdb|1A14|N Chain N, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 5 Residue Linker And
Influenza Virus Neuraminidase
pdb|1NMC|N Chain N, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 15 Residue Linker And
Influenza Virus Neuraminidase
pdb|1NMC|A Chain A, Complex Between Nc10 Anti-Influenza Virus Neuraminidase
Single Chain Antibody With A 15 Residue Linker And
Influenza Virus Neuraminidase
pdb|1F8B|A Chain A, Native Influenza Virus Neuraminidase In Complex With
Neu5ac2en
pdb|1F8C|A Chain A, Native Influenza Neuraminidase In Complex With
4-Amino-2-Deoxy-2,3- Dehydro-N-Neuraminic Acid
pdb|1F8D|A Chain A, Native Influenza Neuraminidase In Complex With
9-Amino-2-Deoxy-2,3- Dehydro-N-Neuraminic Acid
pdb|1F8E|A Chain A, Native Influenza Neuraminidase In Complex With
4,9-diamino-2-deoxy-2, 3-dehydro-n-acetyl-neuraminic
Acid
pdb|1L7F|A Chain A, Crystal Structure Of Influenza Virus Neuraminidase In
Complex With Bcx-1812
pdb|2C4A|A Chain A, Structure Of Neuraminidase Subtype N9 Complexed With 30 Mm
Sialic Acid (Nana, Neu5ac), Crystal Soaked For 3 Hours
At 291 K.
pdb|2C4L|A Chain A, Structure Of Neuraminidase Subtype N9 Complexed With 30 Mm
Sialic Acid (Nana, Neu5ac), Crystal Soaked For 24 Hours
At 291 K And Finally Backsoaked For 30 Min In A
Cryoprotectant Solution Which Did Not Contain Neu5ac
pdb|1BJI|A Chain A, The X-Ray Structure Of A Complex Of Tern N9 Influenza
Virus Neuraminidase Complexed With The Glaxo
6-Carboxamide Sialic Acid Analogue Gr217029
pdb|1MWE|A Chain A, The X-Ray Structure Of A Complex Of Tern N9 Influenza
Virus Neuraminidase Complexed With Sialic Acid At 4
Degrees C Revealing A Second Sialic Acid Binding Site
pdb|2QWI|A Chain A, The X-ray Structure Of A Complex Of
N-acetyl-4-guanidino-6-
Methyl(propyl)carboxamide-4,
5-dihydro-2h-pyran-2-carboxylic Acid And Wildtype Tern
N9 Influenza Virus Neuraminidase
pdb|2QWJ|A Chain A, The X-ray Structure Of A Complex Of 5-n-acetyl-4-amino-6-
Diethylcarboxamide-4,5-dihydro-2h-pyran-2-carboxylic
Acid And A Drug Resistant Variant R292k Of Tern N9
Influenza Virus Neuraminidase
pdb|2QWK|A Chain A, The X-Ray Structure Of A Complex Of
5-N-Acetyl-5-Amino-3-(1-
Ethylpropoxy)-1-Cyclohexene-1-Carboxylic Acid (Gs4071)
And Wildtype Tern N9 Influenza Virus Neuraminidase
pdb|7NN9|A Chain A, Native Influenza Virus Neuraminidase Subtype N9 (Tern)
pdb|1NNC|A Chain A, Influenza Virus Neuraminidase Subtype N9 (Tern) Complexed
With 4- Guanidino-Neu5ac2en Inhibitor
Length = 388
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 71 DPGILIEPDKISAYKLQNDTDLPGKYS-----DNSQIRVL 105
+P + +PD+ Y L T + GK+S D SQ R L
Sbjct: 38 EPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRAL 77
>pdb|1NCC|N Chain N, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
Length = 389
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 71 DPGILIEPDKISAYKLQNDTDLPGKYS-----DNSQIRVL 105
+P + +PD+ Y L T + GK+S D SQ R L
Sbjct: 39 EPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRAL 78
>pdb|1NCB|N Chain N, Crystal Structures Of Two Mutant Neuraminidase-Antibody
Complexes With Amino Acid Substitutions In The Interface
Length = 389
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 71 DPGILIEPDKISAYKLQNDTDLPGKYS-----DNSQIRVL 105
+P + +PD+ Y L T + GK+S D SQ R L
Sbjct: 39 EPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRAL 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.144 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,837,207
Number of Sequences: 62578
Number of extensions: 144209
Number of successful extensions: 371
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 12
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)