Query 038706
Match_columns 127
No_of_seqs 121 out of 164
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 03:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ct0_A Non-SMC element 1 homol 75.3 0.63 2.1E-05 29.6 0.2 39 83-124 6-48 (74)
2 1tac_A TAT protein; transcript 65.1 8 0.00027 25.4 3.8 32 67-102 1-32 (86)
3 1wfl_A Zinc finger protein 216 65.0 8.4 0.00029 24.6 3.8 19 93-111 24-42 (74)
4 2kix_A BM2 protein; channel, t 62.8 11 0.00037 20.0 3.4 19 11-29 2-20 (33)
5 2pzo_E CAP-Gly domain-containi 59.0 2.2 7.6E-05 24.5 0.2 9 94-102 20-28 (42)
6 3mi9_C Protein TAT; P-TEFB, HI 43.7 19 0.00065 23.6 2.9 32 67-102 1-32 (86)
7 1e9k_A CAMP specific phosphodi 42.2 6.2 0.00021 21.8 0.3 12 113-124 2-15 (38)
8 1e7l_A GP49, recombination end 37.0 10 0.00035 27.5 0.8 26 92-119 18-43 (157)
9 3e2u_E CAP-Gly domain-containi 36.7 8.2 0.00028 22.1 0.2 9 94-102 20-28 (42)
10 1vf5_B Subunit IV; photosynthe 28.6 55 0.0019 23.4 3.6 12 65-76 61-72 (160)
11 3jyw_L 60S ribosomal protein L 27.2 46 0.0016 24.8 3.0 30 61-90 128-157 (192)
12 1zu1_A DSRBP-ZFA, RNA binding 24.2 25 0.00086 23.8 1.0 20 87-106 25-44 (127)
13 3ech_C 25-MER fragment of prot 20.8 2.7 9.1E-05 21.2 -3.3 8 1-8 11-18 (25)
14 1wfp_A Zinc finger (AN1-like) 20.6 1.7E+02 0.0058 18.4 4.4 14 94-107 25-38 (74)
No 1
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.31 E-value=0.63 Score=29.59 Aligned_cols=39 Identities=3% Similarity=-0.083 Sum_probs=27.5
Q ss_pred cccccCCCCCCCCccccccccccC--CCCcccCCCCCCCc--eecc
Q 038706 83 AYKLQNDTDLPGKYSDNSQIRVLS--AESGRIHRFDGIKH--TWLL 124 (127)
Q Consensus 83 ~drsk~~hvi~n~~C~lC~i~V~~--~tKHCv~~FDh~hc--~Wln 124 (127)
-+++++..+++ .|.+|.-.+.. +.+-|..+|-. || |||+
T Consensus 6 ~~~~~y~~~i~--~C~IC~~~i~~g~~C~~C~h~fH~-~Ci~kWl~ 48 (74)
T 2ct0_A 6 SGRETYPDAVK--ICNICHSLLIQGQSCETCGIRMHL-PCVAKYFQ 48 (74)
T ss_dssp CCCCCCSSSSC--BCSSSCCBCSSSEECSSSCCEECH-HHHHHHST
T ss_pred cchhhccCCCC--cCcchhhHcccCCccCCCCchhhH-HHHHHHHH
Confidence 34566666666 59999977753 44567788877 78 7985
No 2
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=65.06 E-value=8 Score=25.39 Aligned_cols=32 Identities=25% Similarity=0.170 Sum_probs=18.0
Q ss_pred ecCCCCCCccCCCccccccccCCCCCCCCccccccc
Q 038706 67 IDPADPGILIEPDKISAYKLQNDTDLPGKYSDNSQI 102 (127)
Q Consensus 67 iDPaD~~v~~~~~~~~~drsk~~hvi~n~~C~lC~i 102 (127)
+||.||++--..... |+-..-=.+.||.-|-.
T Consensus 1 MepvDp~lepw~hPg----sqP~T~C~~CyCKkCc~ 32 (86)
T 1tac_A 1 LDPVDPNIEPWNHPG----SQPKTASNRAHAKKSAY 32 (86)
T ss_dssp CCSSSSSSCCCCCCS----SSTTTCSSCSSTTTTTT
T ss_pred CCCcCCCCCcccCCC----CCCCCCCCCceecchhh
Confidence 589999986543332 22222233567776655
No 3
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=65.00 E-value=8.4 Score=24.63 Aligned_cols=19 Identities=5% Similarity=-0.265 Sum_probs=13.1
Q ss_pred CCCccccccccccCCCCcc
Q 038706 93 PGKYSDNSQIRVLSAESGR 111 (127)
Q Consensus 93 ~n~~C~lC~i~V~~~tKHC 111 (127)
+..+|..|.-.|+-.-..|
T Consensus 24 ~~nRC~~CrKkvgL~gf~C 42 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDC 42 (74)
T ss_dssp CTTBCSSSCCBCGGGCEEC
T ss_pred cCCcChhhCCcccccCeec
Confidence 3468999999887543444
No 4
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=62.82 E-value=11 Score=20.03 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=13.6
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 038706 11 AHTFQVVAITVFFLLSVAY 29 (127)
Q Consensus 11 lh~~Qv~~W~~~~~l~~~~ 29 (127)
|.|+|+++...|++-++-|
T Consensus 2 lep~qilsi~sfilsalhf 20 (33)
T 2kix_A 2 LEPFQILSISSFILSALHF 20 (33)
T ss_dssp CTTTHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 5689999988877555433
No 5
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=58.97 E-value=2.2 Score=24.46 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=7.2
Q ss_pred CCccccccc
Q 038706 94 GKYSDNSQI 102 (127)
Q Consensus 94 n~~C~lC~i 102 (127)
--||++|++
T Consensus 20 RpYCd~CEv 28 (42)
T 2pzo_E 20 RPYCEICEM 28 (42)
T ss_dssp -CEETTTTE
T ss_pred Ccccccccc
Confidence 459999998
No 6
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=43.68 E-value=19 Score=23.56 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=18.5
Q ss_pred ecCCCCCCccCCCccccccccCCCCCCCCccccccc
Q 038706 67 IDPADPGILIEPDKISAYKLQNDTDLPGKYSDNSQI 102 (127)
Q Consensus 67 iDPaD~~v~~~~~~~~~drsk~~hvi~n~~C~lC~i 102 (127)
+||.||++--..... |+-...=.+.||.-|-.
T Consensus 1 M~pvdp~lepw~hPg----sqP~T~Cn~CYCKkCcy 32 (86)
T 3mi9_C 1 MEPVDPRLEPWKHPG----SQPKTACTNCYCKKCCF 32 (86)
T ss_dssp CCCCCTTSCGGGCCC----CCCSSCCCSCCSTTGGG
T ss_pred CCCCCCCcccccCcC----CCCCCCCCCccccchhh
Confidence 589999976543332 22223334677777765
No 7
>1e9k_A CAMP specific phosphodiesterase PDE4D5; hydrolase; NMR {Homo sapiens} SCOP: j.87.1.1
Probab=42.21 E-value=6.2 Score=21.76 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=8.0
Q ss_pred CCCCCCCce--ecc
Q 038706 113 HRFDGIKHT--WLL 124 (127)
Q Consensus 113 ~~FDh~hc~--Wln 124 (127)
...|.-||+ |||
T Consensus 2 pevdnphc~~~~ln 15 (38)
T 1e9k_A 2 PEVDNPHCPNPWLN 15 (38)
T ss_dssp CCSSCSSSSTHHHH
T ss_pred CCCCCCCCCCcccc
Confidence 345666786 887
No 8
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=37.02 E-value=10 Score=27.52 Aligned_cols=26 Identities=8% Similarity=-0.123 Sum_probs=17.2
Q ss_pred CCCCccccccccccCCCCcccCCCCCCC
Q 038706 92 LPGKYSDNSQIRVLSAESGRIHRFDGIK 119 (127)
Q Consensus 92 i~n~~C~lC~i~V~~~tKHCv~~FDh~h 119 (127)
.|+..|.+|+.......+ ....||.|
T Consensus 18 ~Q~g~C~IC~~~l~~~~~--~~~vDHdH 43 (157)
T 1e7l_A 18 AQNGKCLICQRELNPDVQ--ANHLDHDH 43 (157)
T ss_dssp HTTTBCTTTCCBCCSSGG--GSEEEECC
T ss_pred HhCCcCcccCCccccccc--cccccCCC
Confidence 357899999998654322 34457755
No 9
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=36.67 E-value=8.2 Score=22.09 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=7.6
Q ss_pred CCccccccc
Q 038706 94 GKYSDNSQI 102 (127)
Q Consensus 94 n~~C~lC~i 102 (127)
--||+.|++
T Consensus 20 RpYCe~CEV 28 (42)
T 3e2u_E 20 RPYCEICEM 28 (42)
T ss_dssp CCEETTTTE
T ss_pred Cccccccee
Confidence 458999998
No 10
>1vf5_B Subunit IV; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.32.1.1 PDB: 2d2c_B* 2e74_B* 2e75_B* 2e76_B* 2zt9_B* 1q90_D*
Probab=28.60 E-value=55 Score=23.43 Aligned_cols=12 Identities=25% Similarity=0.119 Sum_probs=8.3
Q ss_pred eeecCCCCCCcc
Q 038706 65 TGIDPADPGILI 76 (127)
Q Consensus 65 t~iDPaD~~v~~ 76 (127)
..-|||||.+.-
T Consensus 61 ~LgdpAnPl~TP 72 (160)
T 1vf5_B 61 MVGEPANPFATP 72 (160)
T ss_dssp BCCCBCCSSCCC
T ss_pred HHHhcccccCCC
Confidence 344799998654
No 11
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=27.22 E-value=46 Score=24.79 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=21.9
Q ss_pred heeeeeecCCCCCCccCCCccccccccCCC
Q 038706 61 YVRCTGIDPADPGILIEPDKISAYKLQNDT 90 (127)
Q Consensus 61 ~~~~t~iDPaD~~v~~~~~~~~~drsk~~h 90 (127)
++..+++||.-|.++.+++-...-.+.|+|
T Consensus 128 ~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~ 157 (192)
T 3jyw_L 128 YFEVILVDPQHKAIRRDARYNWICDPVHKH 157 (192)
T ss_dssp EEEEEEECSSCSSTTTSSTTTGGGSGGGSS
T ss_pred eEEEEEecCCchhhccCCccccccCchhcc
Confidence 467789999999999876655554455555
No 12
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=24.23 E-value=25 Score=23.77 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=14.6
Q ss_pred cCCCCCCCCccccccccccC
Q 038706 87 QNDTDLPGKYSDNSQIRVLS 106 (127)
Q Consensus 87 k~~hvi~n~~C~lC~i~V~~ 106 (127)
+..+.....+|.+|++.+.+
T Consensus 25 e~~~~~~~~~C~~C~v~~~S 44 (127)
T 1zu1_A 25 ENSHIFSDTQCKVCSAVLIS 44 (127)
T ss_dssp HTTTTBCSSEETTTTEECCS
T ss_pred cccccCCCCcCcCCCCEeCC
Confidence 34444566899999998864
No 13
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=20.80 E-value=2.7 Score=21.16 Aligned_cols=8 Identities=50% Similarity=1.161 Sum_probs=4.5
Q ss_pred CCcccCCC
Q 038706 1 MARRHGWQ 8 (127)
Q Consensus 1 ~~R~nGw~ 8 (127)
|.|||.|.
T Consensus 11 ~arrnawd 18 (25)
T 3ech_C 11 AARRNAWD 18 (26)
T ss_dssp HHHHTHHH
T ss_pred HHHHhHHH
Confidence 35666654
No 14
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.60 E-value=1.7e+02 Score=18.42 Aligned_cols=14 Identities=7% Similarity=-0.097 Sum_probs=10.6
Q ss_pred CCccccccccccCC
Q 038706 94 GKYSDNSQIRVLSA 107 (127)
Q Consensus 94 n~~C~lC~i~V~~~ 107 (127)
..+|..|+-.|+-.
T Consensus 25 ~~RC~~C~kkvgL~ 38 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT 38 (74)
T ss_dssp CCBCSSSCCBCTTT
T ss_pred CccchhhcCccccc
Confidence 45899999887743
Done!