Query 038706
Match_columns 127
No_of_seqs 121 out of 164
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 03:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038706.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038706hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wpga4 f.33.1.1 (A:1-124,A:24 55.6 17 0.0013 27.6 7.2 28 6-34 260-287 (472)
2 d1zu1a2 g.37.1.4 (A:74-128) ds 46.1 4 0.00029 23.2 1.4 18 89-106 16-33 (55)
3 d1jm7b_ g.44.1.1 (B:) bard1 RI 41.8 3.7 0.00027 24.9 0.8 31 94-125 22-56 (97)
4 d1iyma_ g.44.1.1 (A:) EL5 RING 30.7 11 0.00078 20.6 1.5 31 94-125 5-42 (55)
5 d1fu9a_ g.37.1.2 (A:) U-shaped 26.2 14 0.001 19.0 1.4 13 94-106 8-20 (36)
6 d1e7la2 d.4.1.5 (A:1-103) Reco 23.8 11 0.00082 23.7 0.8 16 92-107 18-33 (103)
7 d1wpga4 f.33.1.1 (A:1-124,A:24 22.6 91 0.0066 23.2 6.3 36 3-38 397-432 (472)
8 d1px5a1 a.160.1.2 (A:201-346) 20.8 14 0.001 24.7 0.8 12 63-74 95-106 (146)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 19.5 77 0.0056 22.3 4.9 59 17-77 30-90 (248)
10 d1bora_ g.44.1.1 (A:) Acute pr 19.4 66 0.0048 17.1 3.6 13 92-104 4-16 (56)
No 1
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=55.61 E-value=17 Score=27.57 Aligned_cols=28 Identities=11% Similarity=-0.064 Sum_probs=21.2
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHhhhh
Q 038706 6 GWQLPAHTFQVVAITVFFLLSVAYYAFFA 34 (127)
Q Consensus 6 Gw~~Plh~~Qv~~W~~~~~l~~~~f~~~i 34 (127)
|+..|+.|.|++ |+-++...+....+..
T Consensus 260 ~~p~pl~~~qIL-winli~d~lpaiaL~~ 287 (472)
T d1wpga4 260 GLPEALIPVQLL-WVNLVTDGLPATALGF 287 (472)
T ss_dssp CCCCSCCHHHHH-HHHHTTTHHHHHHHTT
T ss_pred CCCccccHHHHH-HHHHHhHHHHHHHHhc
Confidence 678999999998 7777777666555544
No 2
>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=46.14 E-value=4 Score=23.24 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=13.2
Q ss_pred CCCCCCCccccccccccC
Q 038706 89 DTDLPGKYSDNSQIRVLS 106 (127)
Q Consensus 89 ~hvi~n~~C~lC~i~V~~ 106 (127)
+.+-.|.||.+|+...++
T Consensus 16 ~~~d~nk~C~lCn~~Fns 33 (55)
T d1zu1a2 16 DGEDRSKCCPVCNMTFSS 33 (55)
T ss_dssp SCCCTTTEETTTTEECSS
T ss_pred CCCCchhhhhhhhcccCC
Confidence 445567899999986654
No 3
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.85 E-value=3.7 Score=24.89 Aligned_cols=31 Identities=10% Similarity=-0.084 Sum_probs=22.3
Q ss_pred CCccccccccccC-C-CCcccCCCCCCCc--eeccC
Q 038706 94 GKYSDNSQIRVLS-A-ESGRIHRFDGIKH--TWLLN 125 (127)
Q Consensus 94 n~~C~lC~i~V~~-~-tKHCv~~FDh~hc--~WlnN 125 (127)
.+.|.+|.-.... . ...|.+.|.. .| +|++|
T Consensus 22 ~l~C~IC~~~~~~pv~~~~CgH~fC~-~Ci~~~~~~ 56 (97)
T d1jm7b_ 22 LLRCSRCTNILREPVCLGGCEHIFCS-NCVSDCIGT 56 (97)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCT-TTGGGGTTT
T ss_pred cCCCccCCchhhcCceeCCCCCchhH-HHHHHHHhc
Confidence 4579999876653 2 2468888888 68 78875
No 4
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=30.65 E-value=11 Score=20.56 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=19.7
Q ss_pred CCccccccccccCC-----CCcccCCCCCCCc--eeccC
Q 038706 94 GKYSDNSQIRVLSA-----ESGRIHRFDGIKH--TWLLN 125 (127)
Q Consensus 94 n~~C~lC~i~V~~~-----tKHCv~~FDh~hc--~WlnN 125 (127)
+..|-+|.-...++ ...|.+.|-- .| +||++
T Consensus 5 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~-~Ci~~Wl~~ 42 (55)
T d1iyma_ 5 GVECAVCLAELEDGEEARFLPRCGHGFHA-ECVDMWLGS 42 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECT-THHHHTTTT
T ss_pred CCCCeEECccccCCCEEEEeCCCCCcccH-HHHHHHHHh
Confidence 34599997665432 1247777766 67 68865
No 5
>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=26.15 E-value=14 Score=18.97 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=10.8
Q ss_pred CCccccccccccC
Q 038706 94 GKYSDNSQIRVLS 106 (127)
Q Consensus 94 n~~C~lC~i~V~~ 106 (127)
+.||..|+|+.+.
T Consensus 8 ~rYC~~CDI~Fn~ 20 (36)
T d1fu9a_ 8 KKYCSTCDISFNY 20 (36)
T ss_dssp CSEETTTTEECSS
T ss_pred hhHHhhCCceehh
Confidence 4799999998764
No 6
>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Probab=23.79 E-value=11 Score=23.69 Aligned_cols=16 Identities=6% Similarity=-0.230 Sum_probs=12.1
Q ss_pred CCCCccccccccccCC
Q 038706 92 LPGKYSDNSQIRVLSA 107 (127)
Q Consensus 92 i~n~~C~lC~i~V~~~ 107 (127)
.||..|.+|+....+.
T Consensus 18 ~Q~g~C~IC~~~~~~~ 33 (103)
T d1e7la2 18 AQNGKCLICQRELNPD 33 (103)
T ss_dssp HTTTBCTTTCCBCCSS
T ss_pred HhCCcCCCCCCCcccc
Confidence 4678899999876543
No 7
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=22.57 E-value=91 Score=23.22 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=20.4
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHhhhhcccC
Q 038706 3 RRHGWQLPAHTFQVVAITVFFLLSVAYYAFFAPFLG 38 (127)
Q Consensus 3 R~nGw~~Plh~~Qv~~W~~~~~l~~~~f~~~iP~l~ 38 (127)
|+.-|+.++-.--.+-+.+.+.+++...++.+|.+.
T Consensus 397 ~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~l~ 432 (472)
T d1wpga4 397 NQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLP 432 (472)
T ss_dssp SCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTTTH
T ss_pred CcchhhcCccccHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344566654333345555555556666667788663
No 8
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=20.79 E-value=14 Score=24.74 Aligned_cols=12 Identities=50% Similarity=0.592 Sum_probs=8.9
Q ss_pred eeeeecCCCCCC
Q 038706 63 RCTGIDPADPGI 74 (127)
Q Consensus 63 ~~t~iDPaD~~v 74 (127)
+-.-+|||||.-
T Consensus 95 RPvILDPAdPT~ 106 (146)
T d1px5a1 95 RPVILDPADPTG 106 (146)
T ss_dssp SCEEBCTTCTTC
T ss_pred CCceeCCCCCcc
Confidence 344689999963
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=19.54 E-value=77 Score=22.29 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhhhcccChhhHHHHHHHHHHHHHHHH--HhhheeeeeecCCCCCCccC
Q 038706 17 VAITVFFLLSVAYYAFFAPFLGTELYEYVAIGVYSVLAFCV--FILYVRCTGIDPADPGILIE 77 (127)
Q Consensus 17 ~~W~~~~~l~~~~f~~~iP~l~~~~~~~~~~~v~~~l~~~~--~~~~~~~t~iDPaD~~v~~~ 77 (127)
++.++.++.+++.|.++-|=.- +|+|+.=++...+++.+ ++..+..+-.+-.+.+...|
T Consensus 30 ~a~~~~~~~~~~~~vy~s~r~~--p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~tgh~ltk 90 (248)
T d2r6gf1 30 FAITTLILSSAGLYIFANRKAY--AWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTF 90 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCT--THHHHHHHHHHHHHHTHHHHHHHHHGGGBCCSSTTCBCH
T ss_pred HHHHHHHHHHheEEEEEccCcc--ceehhhhHHHHHHHHHHHhheeEEEEEEEEcCCCccccH
Confidence 3444455556666777777444 37888776665555443 34555555577777776553
No 10
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.40 E-value=66 Score=17.14 Aligned_cols=13 Identities=8% Similarity=-0.077 Sum_probs=6.4
Q ss_pred CCCCccccccccc
Q 038706 92 LPGKYSDNSQIRV 104 (127)
Q Consensus 92 i~n~~C~lC~i~V 104 (127)
.+.+.|-+|.-..
T Consensus 4 ~~~l~C~IC~~~~ 16 (56)
T d1bora_ 4 FQFLRCQQCQAEA 16 (56)
T ss_dssp CCCSSCSSSCSSC
T ss_pred cCCCCCcccCccc
Confidence 3444566665433
Done!