Query 038708
Match_columns 331
No_of_seqs 254 out of 1581
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 02:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0956 PHD finger protein AF1 100.0 1.8E-37 3.8E-42 307.4 5.3 172 139-314 6-186 (900)
2 KOG0954 PHD finger protein [Ge 100.0 4.7E-37 1E-41 306.6 6.0 172 134-312 267-440 (893)
3 COG5141 PHD zinc finger-contai 100.0 1.7E-35 3.7E-40 284.4 2.3 175 132-311 187-365 (669)
4 KOG0955 PHD finger protein BR1 100.0 1.2E-34 2.6E-39 305.4 8.5 174 133-311 214-396 (1051)
5 KOG0957 PHD finger protein [Ge 100.0 1.1E-29 2.4E-34 244.9 0.9 175 134-311 115-301 (707)
6 PF13832 zf-HC5HC2H_2: PHD-zin 99.9 1.6E-26 3.6E-31 188.2 6.8 109 199-308 2-110 (110)
7 PF13771 zf-HC5HC2H: PHD-like 99.7 2.6E-17 5.5E-22 129.1 3.7 87 220-309 1-90 (90)
8 KOG0825 PHD Zn-finger protein 99.3 1.6E-12 3.4E-17 132.2 2.5 123 39-192 144-267 (1134)
9 KOG1080 Histone H3 (Lys4) meth 98.8 3.6E-09 7.8E-14 113.3 5.5 143 137-290 572-715 (1005)
10 KOG1244 Predicted transcriptio 98.7 6.8E-09 1.5E-13 94.9 2.5 62 127-191 270-331 (336)
11 PF13831 PHD_2: PHD-finger; PD 98.7 3.6E-09 7.8E-14 68.8 0.1 34 153-189 2-36 (36)
12 PF00628 PHD: PHD-finger; Int 98.6 1.1E-08 2.4E-13 71.5 1.4 49 140-190 1-50 (51)
13 smart00249 PHD PHD zinc finger 98.4 3.4E-07 7.3E-12 61.8 3.9 47 140-188 1-47 (47)
14 KOG1512 PHD Zn-finger protein 98.3 1.7E-07 3.7E-12 86.4 1.6 52 130-186 306-357 (381)
15 KOG4299 PHD Zn-finger protein 97.9 4E-06 8.6E-11 84.9 2.5 53 138-192 253-306 (613)
16 cd04718 BAH_plant_2 BAH, or Br 97.7 2.1E-05 4.5E-10 66.9 2.0 29 164-193 1-29 (148)
17 KOG1973 Chromatin remodeling p 97.5 3.9E-05 8.4E-10 72.3 2.2 52 134-192 215-269 (274)
18 KOG4323 Polycomb-like PHD Zn-f 97.5 4.6E-05 1E-09 75.7 2.2 58 136-193 166-226 (464)
19 COG5034 TNG2 Chromatin remodel 97.2 0.00022 4.8E-09 65.2 2.8 52 133-191 216-270 (271)
20 KOG0383 Predicted helicase [Ge 97.1 0.00023 5E-09 74.3 1.9 54 133-192 42-95 (696)
21 KOG1084 Transcription factor T 97.0 0.00031 6.8E-09 68.9 1.9 127 166-309 194-321 (375)
22 KOG4443 Putative transcription 97.0 0.00035 7.5E-09 71.5 2.1 57 133-192 63-119 (694)
23 KOG1245 Chromatin remodeling c 96.9 0.00021 4.5E-09 80.2 -0.6 56 135-193 1105-1160(1404)
24 KOG4323 Polycomb-like PHD Zn-f 96.6 0.0016 3.5E-08 64.9 3.7 137 137-309 82-222 (464)
25 KOG0957 PHD finger protein [Ge 96.4 0.00098 2.1E-08 66.2 0.8 49 137-188 543-595 (707)
26 PF15446 zf-PHD-like: PHD/FYVE 96.4 0.0031 6.8E-08 54.5 3.6 70 140-209 1-83 (175)
27 smart00249 PHD PHD zinc finger 95.0 0.02 4.2E-07 38.0 2.4 32 254-287 1-34 (47)
28 KOG1473 Nucleosome remodeling 93.7 0.044 9.5E-07 59.5 2.7 111 138-282 344-457 (1414)
29 PF14446 Prok-RING_1: Prokaryo 93.5 0.05 1.1E-06 38.4 1.9 33 138-171 5-37 (54)
30 KOG1244 Predicted transcriptio 93.1 0.031 6.8E-07 51.9 0.5 76 183-284 225-313 (336)
31 PF00628 PHD: PHD-finger; Int 93.0 0.1 2.2E-06 35.9 2.9 30 254-285 1-32 (51)
32 KOG0383 Predicted helicase [Ge 89.4 0.18 4E-06 53.1 1.7 78 160-286 1-78 (696)
33 KOG4443 Putative transcription 89.3 0.14 3.1E-06 52.9 0.8 53 139-191 19-71 (694)
34 KOG1973 Chromatin remodeling p 84.6 0.69 1.5E-05 43.7 2.5 31 252-282 219-250 (274)
35 KOG1512 PHD Zn-finger protein 79.5 0.73 1.6E-05 43.3 0.6 54 136-189 256-315 (381)
36 KOG1246 DNA-binding protein ju 79.4 1.5 3.2E-05 48.3 3.0 55 134-192 151-205 (904)
37 PHA02926 zinc finger-like prot 77.4 0.93 2E-05 41.3 0.6 30 36-65 194-229 (242)
38 PF13639 zf-RING_2: Ring finge 76.8 0.64 1.4E-05 30.9 -0.5 24 39-62 21-44 (44)
39 KOG0317 Predicted E3 ubiquitin 76.3 0.94 2E-05 42.7 0.4 21 45-65 263-283 (293)
40 PF10497 zf-4CXXC_R1: Zinc-fin 75.8 1.8 3.9E-05 34.9 1.8 66 136-210 5-83 (105)
41 PF05502 Dynactin_p62: Dynacti 75.6 2.8 6.1E-05 42.8 3.6 52 153-210 3-62 (483)
42 PF07649 C1_3: C1-like domain; 75.1 1.3 2.8E-05 27.1 0.7 28 140-169 2-29 (30)
43 PHA02929 N1R/p28-like protein; 74.4 1.3 2.8E-05 41.0 0.7 28 38-65 199-226 (238)
44 PF00130 C1_1: Phorbol esters/ 74.2 3.3 7.2E-05 28.4 2.7 35 137-171 10-44 (53)
45 PF11793 FANCL_C: FANCL C-term 74.1 1.5 3.3E-05 32.6 0.9 34 139-172 3-39 (70)
46 PF14569 zf-UDP: Zinc-binding 73.1 0.47 1E-05 36.0 -2.0 52 137-192 8-61 (80)
47 PF13901 DUF4206: Domain of un 70.1 3.8 8.2E-05 36.8 2.7 44 138-191 152-198 (202)
48 PF03107 C1_2: C1 domain; Int 68.9 4.7 0.0001 24.7 2.1 27 140-169 2-29 (30)
49 PF03107 C1_2: C1 domain; Int 68.9 6.1 0.00013 24.2 2.7 27 254-282 2-30 (30)
50 KOG2930 SCF ubiquitin ligase, 67.3 1.9 4.1E-05 34.5 0.2 29 37-65 79-107 (114)
51 PF12678 zf-rbx1: RING-H2 zinc 66.9 1.9 4.2E-05 32.2 0.1 25 38-62 49-73 (73)
52 cd00029 C1 Protein kinase C co 66.4 3.5 7.6E-05 27.6 1.3 34 138-171 11-44 (50)
53 PF14446 Prok-RING_1: Prokaryo 66.4 4.8 0.0001 28.5 2.0 38 253-292 6-46 (54)
54 PF08746 zf-RING-like: RING-li 63.2 3.3 7.2E-05 27.7 0.7 29 255-283 1-29 (43)
55 smart00547 ZnF_RBZ Zinc finger 62.4 4.6 0.0001 23.6 1.2 24 181-205 1-24 (26)
56 PF00641 zf-RanBP: Zn-finger i 61.7 4.3 9.3E-05 24.7 1.0 25 180-205 2-26 (30)
57 COG5034 TNG2 Chromatin remodel 59.4 6.8 0.00015 36.4 2.2 29 254-282 222-252 (271)
58 smart00109 C1 Protein kinase C 58.2 4.1 8.9E-05 27.0 0.5 33 138-171 11-43 (49)
59 PF10367 Vps39_2: Vacuolar sor 58.0 7.1 0.00015 30.6 1.9 30 253-283 79-108 (109)
60 PF11793 FANCL_C: FANCL C-term 56.2 5.9 0.00013 29.4 1.1 33 253-285 3-40 (70)
61 PLN02400 cellulose synthase 53.9 10 0.00022 42.2 2.8 53 137-193 35-89 (1085)
62 PF13832 zf-HC5HC2H_2: PHD-zin 53.1 7.4 0.00016 31.0 1.3 30 138-171 55-86 (110)
63 PF10621 FpoO: F420H2 dehydrog 51.2 2.9 6.2E-05 33.9 -1.4 51 158-208 4-71 (119)
64 PF12773 DZR: Double zinc ribb 49.5 12 0.00026 25.3 1.7 11 181-191 28-38 (50)
65 PF07227 DUF1423: Protein of u 49.2 12 0.00027 37.5 2.4 34 197-230 128-167 (446)
66 PLN02436 cellulose synthase A 49.0 12 0.00026 41.6 2.4 53 137-193 35-89 (1094)
67 PLN02638 cellulose synthase A 48.9 11 0.00024 41.9 2.2 53 137-193 16-70 (1079)
68 KOG1701 Focal adhesion adaptor 48.5 4.7 0.0001 40.1 -0.6 158 139-310 275-461 (468)
69 PLN03208 E3 ubiquitin-protein 47.2 12 0.00025 33.6 1.7 36 38-73 35-86 (193)
70 COG5194 APC11 Component of SCF 47.1 6.4 0.00014 30.1 0.0 29 37-65 52-80 (88)
71 KOG1844 PHD Zn-finger proteins 46.8 12 0.00026 38.0 2.0 48 142-192 89-136 (508)
72 KOG4299 PHD Zn-finger protein 46.3 15 0.00032 38.3 2.5 49 138-191 47-95 (613)
73 PHA02862 5L protein; Provision 46.0 6.7 0.00015 33.4 -0.0 49 139-191 3-51 (156)
74 PF02318 FYVE_2: FYVE-type zin 45.9 17 0.00037 29.6 2.4 52 137-192 53-104 (118)
75 PF13771 zf-HC5HC2H: PHD-like 44.9 14 0.0003 28.1 1.7 35 196-230 35-72 (90)
76 PF00130 C1_1: Phorbol esters/ 44.2 23 0.00049 24.2 2.5 32 253-286 12-47 (53)
77 PLN02915 cellulose synthase A 43.6 16 0.00034 40.6 2.3 53 137-193 14-68 (1044)
78 KOG4628 Predicted E3 ubiquitin 43.6 15 0.00033 35.8 2.0 48 139-192 230-277 (348)
79 PLN02195 cellulose synthase A 42.2 18 0.00038 39.9 2.4 51 139-193 7-59 (977)
80 PF10367 Vps39_2: Vacuolar sor 42.0 20 0.00043 28.0 2.1 33 136-171 76-108 (109)
81 PF10571 UPF0547: Uncharacteri 41.7 17 0.00037 21.7 1.3 21 45-65 4-24 (26)
82 PF14304 CSTF_C: Transcription 40.0 12 0.00026 25.6 0.5 20 2-21 19-38 (46)
83 PF07227 DUF1423: Protein of u 38.8 28 0.00061 35.0 3.1 54 140-193 130-194 (446)
84 smart00744 RINGv The RING-vari 38.1 13 0.00027 25.6 0.4 32 140-172 1-35 (49)
85 COG1773 Rubredoxin [Energy pro 37.2 24 0.00052 25.1 1.6 17 176-193 31-47 (55)
86 PRK14559 putative protein seri 36.7 26 0.00057 37.2 2.6 48 139-191 2-50 (645)
87 KOG1632 Uncharacterized PHD Zn 36.1 16 0.00035 35.7 0.9 40 154-193 74-115 (345)
88 cd00162 RING RING-finger (Real 35.8 19 0.00041 22.7 0.9 26 39-64 18-44 (45)
89 PLN02189 cellulose synthase 35.7 25 0.00054 39.1 2.3 53 137-193 33-87 (1040)
90 KOG1084 Transcription factor T 35.6 7.4 0.00016 38.5 -1.5 112 196-311 122-251 (375)
91 PF12906 RINGv: RING-variant d 34.6 12 0.00027 25.4 -0.1 30 141-171 1-33 (47)
92 PF10080 DUF2318: Predicted me 33.0 20 0.00044 28.7 0.9 33 139-171 36-68 (102)
93 KOG3053 Uncharacterized conser 32.5 14 0.00031 34.4 -0.1 58 134-193 16-82 (293)
94 PHA02825 LAP/PHD finger-like p 32.1 17 0.00036 31.5 0.3 53 136-192 6-58 (162)
95 KOG1473 Nucleosome remodeling 30.3 12 0.00026 41.6 -1.1 51 138-193 428-481 (1414)
96 PF12861 zf-Apc11: Anaphase-pr 30.1 18 0.00038 28.1 0.1 28 38-65 51-81 (85)
97 PF11781 RRN7: RNA polymerase 29.6 37 0.0008 21.8 1.5 23 140-162 10-32 (36)
98 KOG0955 PHD finger protein BR1 29.2 53 0.0011 36.8 3.5 60 216-286 243-304 (1051)
99 COG4315 Uncharacterized protei 28.8 31 0.00068 28.5 1.3 19 313-331 85-103 (138)
100 PF08274 PhnA_Zn_Ribbon: PhnA 28.8 22 0.00048 22.0 0.3 23 140-162 4-26 (30)
101 TIGR01206 lysW lysine biosynth 28.4 52 0.0011 23.3 2.2 44 140-183 4-52 (54)
102 KOG3648 Golgi apparatus protei 28.4 35 0.00076 36.0 1.9 24 7-30 62-85 (1179)
103 COG5243 HRD1 HRD ubiquitin lig 27.5 46 0.00099 32.9 2.3 20 45-64 324-343 (491)
104 PF14447 Prok-RING_4: Prokaryo 26.9 40 0.00088 23.9 1.4 23 44-66 27-50 (55)
105 smart00154 ZnF_AN1 AN1-like Zi 26.8 44 0.00095 21.8 1.5 16 255-270 1-17 (39)
106 PF15446 zf-PHD-like: PHD/FYVE 25.8 57 0.0012 28.6 2.4 23 151-173 120-142 (175)
107 PF13922 PHD_3: PHD domain of 25.8 11 0.00024 27.7 -1.6 21 153-173 41-61 (69)
108 PF13916 Phostensin_N: PP1-reg 25.3 39 0.00086 25.7 1.2 26 5-30 45-70 (82)
109 PF13719 zinc_ribbon_5: zinc-r 24.2 73 0.0016 20.4 2.2 16 262-279 22-37 (37)
110 PF05191 ADK_lid: Adenylate ki 23.6 52 0.0011 21.1 1.4 28 156-190 2-29 (36)
111 KOG0802 E3 ubiquitin ligase [P 23.2 27 0.00059 36.1 -0.0 25 41-65 316-340 (543)
112 PF04423 Rad50_zn_hook: Rad50 23.1 21 0.00045 24.8 -0.6 16 51-66 16-31 (54)
113 PF14803 Nudix_N_2: Nudix N-te 22.6 30 0.00064 22.0 0.1 7 183-189 23-29 (34)
114 PF13717 zinc_ribbon_4: zinc-r 22.3 58 0.0013 20.8 1.4 15 262-278 22-36 (36)
115 PF00301 Rubredoxin: Rubredoxi 22.2 42 0.0009 23.0 0.7 17 176-193 29-45 (47)
116 PF13920 zf-C3HC4_3: Zinc fing 21.4 36 0.00079 22.9 0.3 23 43-65 25-47 (50)
117 KOG0954 PHD finger protein [Ge 21.4 77 0.0017 34.0 2.8 32 253-286 324-355 (893)
118 PF09297 zf-NADH-PPase: NADH p 20.7 64 0.0014 19.8 1.3 26 139-164 4-30 (32)
119 PF13923 zf-C3HC4_2: Zinc fing 20.6 32 0.00069 21.9 -0.1 24 38-61 16-39 (39)
120 KOG4477 RING1 interactor RYBP 20.4 53 0.0012 29.2 1.2 34 178-212 20-53 (228)
No 1
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=307.37 Aligned_cols=172 Identities=39% Similarity=0.838 Sum_probs=156.9
Q ss_pred ccccccccccCCCCCCeEEccC--CCcccccccccCCCCCCCCCCcEeCcccccccccccccccccccCCCCCCcccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDG--CDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCCLCPVGGGAMKPTKDG 216 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGalk~t~~~ 216 (331)
.-|.||.+..++.+|.|++||+ |-++||+.|||+ .+||.|.|||..|.... +.-++.|.|||.++||||+|+++
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGI---vqVPtGpWfCrKCesqe-raarvrCeLCP~kdGALKkTDn~ 81 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGI---VQVPTGPWFCRKCESQE-RAARVRCELCPHKDGALKKTDNG 81 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhccee---EecCCCchhhhhhhhhh-hhccceeecccCcccceecccCC
Confidence 4699999988999999999998 999999999995 67999999999998762 34678999999999999999999
Q ss_pred ccceeeccccCCeeEEeCCCCCccccccCccccccCccccccCCC-------CCCeeEeCCCCCCceEeccccccCCceE
Q 038708 217 LWAHVVCAVLVPEVFFEDPEGREGIDCSKVPKTRREKRCYICKSK-------RGCSVECSEPKCCLSFHVTCGLSEDLCI 289 (331)
Q Consensus 217 ~wvH~~Cal~~pe~~f~~~~~~~~v~~~~i~~~~~~~~C~iC~~~-------~G~~i~C~~~~C~~~fHv~CA~~~g~~~ 289 (331)
-|+||+|||++|||.|.|...|++|-+..||.+|++..|+||... .|+||+|...+|.+.|||+||+.+|+..
T Consensus 82 GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLC 161 (900)
T KOG0956|consen 82 GWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLC 161 (900)
T ss_pred CceEEEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccce
Confidence 999999999999999999999999999999999999999999975 5999999999999999999999999987
Q ss_pred EeecCCCCCceEEEcCCCcccchhh
Q 038708 290 EYREGKKGGAVVAGFCKDHTEIWKK 314 (331)
Q Consensus 290 ~~~~~~~~~~~~~~~C~~H~~~~~~ 314 (331)
+......+++.|-.||+.|....++
T Consensus 162 EE~gn~~dNVKYCGYCk~HfsKlkk 186 (900)
T KOG0956|consen 162 EEEGNISDNVKYCGYCKYHFSKLKK 186 (900)
T ss_pred eccccccccceechhHHHHHHHhhc
Confidence 7654455678899999999876554
No 2
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=100.00 E-value=4.7e-37 Score=306.57 Aligned_cols=172 Identities=40% Similarity=0.900 Sum_probs=160.5
Q ss_pred cccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccccccccccccccCCCCCCccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCCLCPVGGGAMKPT 213 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGalk~t 213 (331)
+.+++..|.||..+|+++.|.|++||.|+..||+.||| +.++|+|.|+|..|... ..+.|+|||.+||+||.+
T Consensus 267 e~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG---Ile~p~gpWlCr~Calg----~~ppCvLCPkkGGamK~~ 339 (893)
T KOG0954|consen 267 EYDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG---ILEVPEGPWLCRTCALG----IEPPCVLCPKKGGAMKPT 339 (893)
T ss_pred eccccceeceecCCCccccceeEEeccchhHHHHhhhc---eeecCCCCeeehhcccc----CCCCeeeccccCCccccc
Confidence 34577899999999999999999999999999999999 46799999999999998 578999999999999999
Q ss_pred ccc-ccceeeccccCCeeEEeCCCCCccc-cccCccccccCccccccCCCCCCeeEeCCCCCCceEeccccccCCceEEe
Q 038708 214 KDG-LWAHVVCAVLVPEVFFEDPEGREGI-DCSKVPKTRREKRCYICKSKRGCSVECSEPKCCLSFHVTCGLSEDLCIEY 291 (331)
Q Consensus 214 ~~~-~wvH~~Cal~~pe~~f~~~~~~~~v-~~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~~g~~~~~ 291 (331)
..| .|||++||||+|||+|.+++.|+|| .|+.|+.+||.+.|.+|+.+.|+||+|+...|.++||+.||+.+|+.+..
T Consensus 340 ~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~GACIqCs~k~C~t~fHv~CA~~aG~~~~~ 419 (893)
T KOG0954|consen 340 KSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKSGACIQCSNKTCRTAFHVTCAFEAGLEMKT 419 (893)
T ss_pred CCCCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccCcceEEecccchhhhccchhhhhcCCeeee
Confidence 866 5999999999999999999999999 59999999999999999999999999999999999999999999999998
Q ss_pred ecCCCCCceEEEcCCCcccch
Q 038708 292 REGKKGGAVVAGFCKDHTEIW 312 (331)
Q Consensus 292 ~~~~~~~~~~~~~C~~H~~~~ 312 (331)
.....+...++.||.+|+...
T Consensus 420 ~~~~~D~v~~~s~c~khs~~~ 440 (893)
T KOG0954|consen 420 ILKENDEVKFKSYCSKHSDHR 440 (893)
T ss_pred eeccCCchhheeecccccccc
Confidence 887767788899999998864
No 3
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=284.40 Aligned_cols=175 Identities=33% Similarity=0.736 Sum_probs=153.7
Q ss_pred cccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccccccccccccccCCCCCCc
Q 038708 132 EEEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCCLCPVGGGAMK 211 (331)
Q Consensus 132 ~~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGalk 211 (331)
+.++.-+..|.+|..++.++.|.+++||+|+.+||+.|||+ .-+|+|.|+|.+|..... ...-|.+||.++||||
T Consensus 187 ~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI---~f~peG~WlCrkCi~~~~--~i~~C~fCps~dGaFk 261 (669)
T COG5141 187 EPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGI---QFLPEGFWLCRKCIYGEY--QIRCCSFCPSSDGAFK 261 (669)
T ss_pred CCchhhhhhhHhccccccCCcceEEEecCcchhhhhhcccc---eecCcchhhhhhhccccc--ceeEEEeccCCCCcee
Confidence 34455678899999999999999999999999999999996 459999999999999975 4555999999999999
Q ss_pred cccccccceeeccccCCeeEEeCCCCCcccc-ccCccccccCccccccCCCCCCeeEeCCCCCCceEeccccccCCceEE
Q 038708 212 PTKDGLWAHVVCAVLVPEVFFEDPEGREGID-CSKVPKTRREKRCYICKSKRGCSVECSEPKCCLSFHVTCGLSEDLCIE 290 (331)
Q Consensus 212 ~t~~~~wvH~~Cal~~pe~~f~~~~~~~~v~-~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~~g~~~~ 290 (331)
.|.+|.|+|++||+|+|++.|.+...+++|+ +.+++.++|++.|.+|+..+|++|+|++.+|.++|||+||+.+|+++.
T Consensus 262 qT~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~GtcIqCs~~nC~~aYHVtCArrag~f~~ 341 (669)
T COG5141 262 QTSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFGGTCIQCSYFNCTRAYHVTCARRAGYFDL 341 (669)
T ss_pred eccCCchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccCcceeeecccchhhhhhhhhhhhcchhhh
Confidence 9999999999999999999999999999995 999999999999999999999999999999999999999999998765
Q ss_pred -eecCC--CCCceEEEcCCCcccc
Q 038708 291 -YREGK--KGGAVVAGFCKDHTEI 311 (331)
Q Consensus 291 -~~~~~--~~~~~~~~~C~~H~~~ 311 (331)
....+ ........||.+|++.
T Consensus 342 ~~~s~n~~s~~id~e~~c~kh~p~ 365 (669)
T COG5141 342 NIYSHNGISYCIDHEPLCRKHYPL 365 (669)
T ss_pred hhhcccccceeecchhhhcCCCCc
Confidence 11111 0113345799999985
No 4
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=305.43 Aligned_cols=174 Identities=41% Similarity=0.893 Sum_probs=158.8
Q ss_pred ccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccccccccccccccCCCCCCcc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCCLCPVGGGAMKP 212 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGalk~ 212 (331)
...+.+.+|.||.+++..+.|.+|+||+|+++||++|||+| -||+|.|+|..|..... ....|.+|+..+||||.
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~---~ipeg~WlCr~Cl~s~~--~~v~c~~cp~~~gAFkq 288 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIP---FIPEGQWLCRRCLQSPQ--RPVRCLLCPSKGGAFKQ 288 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCC---CCCCCcEeehhhccCcC--cccceEeccCCCCccee
Confidence 45567889999999998899999999999999999999954 59999999999999976 45899999999999999
Q ss_pred ccccccceeeccccCCeeEEeCCCCCcccc-ccCccccccCccccccCCCC-CCeeEeCCCCCCceEeccccccCCceEE
Q 038708 213 TKDGLWAHVVCAVLVPEVFFEDPEGREGID-CSKVPKTRREKRCYICKSKR-GCSVECSEPKCCLSFHVTCGLSEDLCIE 290 (331)
Q Consensus 213 t~~~~wvH~~Cal~~pe~~f~~~~~~~~v~-~~~i~~~~~~~~C~iC~~~~-G~~i~C~~~~C~~~fHv~CA~~~g~~~~ 290 (331)
|.+|+|+|++||+|+|++.|.+...+++|+ ++.|+..||++.|++|+.++ |++|+|+..+|..+||++||+.+|++|.
T Consensus 289 t~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~~gaciqcs~~~c~~a~hvtca~~agl~m~ 368 (1051)
T KOG0955|consen 289 TDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWKLTCYICKQKGLGACIQCSKANCYTAFHVTCARRAGLYMK 368 (1051)
T ss_pred ccCCceeeeehhhcccccccccchhhccccchhcCcHhhhhceeeeeccCCCCcceecchhhhhhhhhhhhHhhcCceEe
Confidence 999999999999999999999999999996 89999999999999999998 9999999999999999999999999999
Q ss_pred eecCCCCC-------ceEEEcCCCcccc
Q 038708 291 YREGKKGG-------AVVAGFCKDHTEI 311 (331)
Q Consensus 291 ~~~~~~~~-------~~~~~~C~~H~~~ 311 (331)
..+..++. +.+..||+.|++.
T Consensus 369 ~~~~~~~s~~~~s~~v~~~syC~~H~pp 396 (1051)
T KOG0955|consen 369 SNTVKELSKNGTSQSVNKISYCDKHTPP 396 (1051)
T ss_pred ecccccccccccccccceeeeccCCCCc
Confidence 66544332 4678999999986
No 5
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=99.95 E-value=1.1e-29 Score=244.87 Aligned_cols=175 Identities=31% Similarity=0.646 Sum_probs=151.3
Q ss_pred cccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCC-------CcEeCcccccccccccccccccccCC
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPD-------GDWFCAQCLAANDENRAFSCCLCPVG 206 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~-------~~W~C~~C~~~~~~~~~~~C~lC~~~ 206 (331)
.+..-.+|.||....+.+.+.+|.||.|++.||..|||+.-..+||. ..|||..|+++. ..+.|.|||..
T Consensus 115 apkk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gv---s~P~CElCPn~ 191 (707)
T KOG0957|consen 115 APKKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGV---SLPHCELCPNR 191 (707)
T ss_pred ccccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCC---CCCccccCCCc
Confidence 34444589999998788999999999999999999999852233443 469999999996 36999999999
Q ss_pred CCCCccccccccceeeccccCCeeEEeCCCCCccccccCcccccc-CccccccCCC----CCCeeEeCCCCCCceEeccc
Q 038708 207 GGAMKPTKDGLWAHVVCAVLVPEVFFEDPEGREGIDCSKVPKTRR-EKRCYICKSK----RGCSVECSEPKCCLSFHVTC 281 (331)
Q Consensus 207 gGalk~t~~~~wvH~~Cal~~pe~~f~~~~~~~~v~~~~i~~~~~-~~~C~iC~~~----~G~~i~C~~~~C~~~fHv~C 281 (331)
+|+||.++-|+|||++|||++|++.|.....+.+|.+..+....| ...|++|... .|.+|.|....|..+|||+|
T Consensus 192 ~GifKetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARtGvci~CdaGMCk~YfHVTC 271 (707)
T KOG0957|consen 192 FGIFKETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFARTGVCIRCDAGMCKEYFHVTC 271 (707)
T ss_pred CCcccccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhhcceeeeccchhhhhhhhhhH
Confidence 999999999999999999999999999999999988777765555 4689999975 59999999999999999999
Q ss_pred cccCCceEEeecCCCCCceEEEcCCCcccc
Q 038708 282 GLSEDLCIEYREGKKGGAVVAGFCKDHTEI 311 (331)
Q Consensus 282 A~~~g~~~~~~~~~~~~~~~~~~C~~H~~~ 311 (331)
|+..|+.++....++..+.|.+||++|+..
T Consensus 272 AQk~GlLvea~~e~DiAdpfya~CK~Ht~r 301 (707)
T KOG0957|consen 272 AQKLGLLVEATDENDIADPFYAFCKKHTNR 301 (707)
T ss_pred HhhhcceeeccccccchhhHHHHHHhhcch
Confidence 999999998766655567889999999984
No 6
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=99.93 E-value=1.6e-26 Score=188.23 Aligned_cols=109 Identities=39% Similarity=0.871 Sum_probs=102.0
Q ss_pred ccccccCCCCCCccccccccceeeccccCCeeEEeCCCCCccccccCccccccCccccccCCCCCCeeEeCCCCCCceEe
Q 038708 199 SCCLCPVGGGAMKPTKDGLWAHVVCAVLVPEVFFEDPEGREGIDCSKVPKTRREKRCYICKSKRGCSVECSEPKCCLSFH 278 (331)
Q Consensus 199 ~C~lC~~~gGalk~t~~~~wvH~~Cal~~pe~~f~~~~~~~~v~~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~fH 278 (331)
.|.||+..|||||++.++.|||++||+|+|++.|.+...+++++++.++..+++..|.+|+.+.|++|+|+..+|.++||
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~fH 81 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLKCSICGKSGGACIKCSHPGCSTAFH 81 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcCCcCcCCCCCCceeEEcCCCCCCcCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceEEeecCCCCCceEEEcCCCc
Q 038708 279 VTCGLSEDLCIEYREGKKGGAVVAGFCKDH 308 (331)
Q Consensus 279 v~CA~~~g~~~~~~~~~~~~~~~~~~C~~H 308 (331)
|+||+.+|+.+++..... ...+.+||.+|
T Consensus 82 ~~CA~~~g~~~~~~~~~~-~~~~~~~C~~H 110 (110)
T PF13832_consen 82 PTCARKAGLYFEIENEED-NVQFIAYCPKH 110 (110)
T ss_pred HHHHHHCCCeEEeeecCC-CceEEEECCCC
Confidence 999999999998865332 56789999999
No 7
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=99.67 E-value=2.6e-17 Score=129.14 Aligned_cols=87 Identities=39% Similarity=0.737 Sum_probs=76.7
Q ss_pred eeeccccCCeeEEeCCCC---CccccccCccccccCccccccCCCCCCeeEeCCCCCCceEeccccccCCceEEeecCCC
Q 038708 220 HVVCAVLVPEVFFEDPEG---REGIDCSKVPKTRREKRCYICKSKRGCSVECSEPKCCLSFHVTCGLSEDLCIEYREGKK 296 (331)
Q Consensus 220 H~~Cal~~pe~~f~~~~~---~~~v~~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~~g~~~~~~~~~~ 296 (331)
|+.||+|+|++.+.+... ....+++.+..+++++.|++|+.+.|++|+|...+|.++||++||+..|+.+++.+
T Consensus 1 H~~Calwsp~v~~~~~~~~~~~~i~~v~~~~~~~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~~~~~~--- 77 (90)
T PF13771_consen 1 HENCALWSPEVYFDESEDIGGFSIEDVEKEIKRRRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCFIEFDE--- 77 (90)
T ss_pred ChHHheecCceEEeCCCccccccHHhHHHHHHHHhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeEEEEcc---
Confidence 899999999999988763 33446788888899999999999999999999999999999999999999998875
Q ss_pred CCceEEEcCCCcc
Q 038708 297 GGAVVAGFCKDHT 309 (331)
Q Consensus 297 ~~~~~~~~C~~H~ 309 (331)
.+..+.+||++|+
T Consensus 78 ~~~~~~~~C~~H~ 90 (90)
T PF13771_consen 78 DNGKFRIFCPKHS 90 (90)
T ss_pred CCCceEEEChhcC
Confidence 2357899999996
No 8
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.26 E-value=1.6e-12 Score=132.18 Aligned_cols=123 Identities=19% Similarity=0.373 Sum_probs=79.1
Q ss_pred cccccccccchhhhhhhcCCCCCCCCCCCcccccccCCCCCCCCcccccCCcccccccCCcchhcccccccCCCCcccch
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSSDSPETRTVGAGGGISSFTTYSLPAKKRVWAIQPDLLFLDLNVEWKPPSFIETK 118 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~~ 118 (331)
..+.++..||-+|.|++..||+|+..|+.+.+ .+...|- ...-++|....... +
T Consensus 144 c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V--~eS~~~~--~~vR~lP~EEs~~~----------------------~ 197 (1134)
T KOG0825|consen 144 TAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV--LESTGIE--ANVRCLPSEESENI----------------------L 197 (1134)
T ss_pred cccccHHHHhhhhhhhcccCchhhhhhheeee--ecccccc--ceeEecchhhhhhh----------------------h
Confidence 36778899999999999999999999933222 1100000 00001111000000 0
Q ss_pred hhHHhhhhhhhcccccccccccccccccccCCCCCCeEEccCCCcc-cccccccCCCCCCCCCCcEeCccccccc
Q 038708 119 DECIQEQEEIQQEEEEEDDGILCAVCQSTDGDSKDPIVFCDGCDLM-VHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~-~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
.. +- ++.-+.......+...|.||...| .++.||+||+|+.+ ||+|||.|++ .++|.+.|||+.|....
T Consensus 198 e~-~~-d~~~d~~~~~~~E~~~C~IC~~~D--pEdVLLLCDsCN~~~YH~YCLDPdl-~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 198 EK-GG-DEKQDQISGLSQEEVKCDICTVHD--PEDVLLLCDSCNKVYYHVYCLDPDL-SESPVNEWYCTNCSLLE 267 (1134)
T ss_pred hh-cc-ccccccccCcccccccceeeccCC--hHHhheeecccccceeeccccCccc-ccccccceecCcchhhh
Confidence 00 00 000001112334557899999987 67999999999999 9999999985 88999999999998774
No 9
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=98.82 E-value=3.6e-09 Score=113.28 Aligned_cols=143 Identities=38% Similarity=0.800 Sum_probs=119.4
Q ss_pred ccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccccccccccccccCCCCCCcccccc
Q 038708 137 DGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCCLCPVGGGAMKPTKDG 216 (331)
Q Consensus 137 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGalk~t~~~ 216 (331)
....|.+|+..+.+..|.++.|+.|...+|+.|||. +...+.-.|.|..|.... -...|.+|+..||||+.+..+
T Consensus 572 ~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~--~~~~~~~~~~~~~~~~~~---~~r~~~l~~~~g~al~p~d~g 646 (1005)
T KOG1080|consen 572 TTERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGN--LKSYDGTSWVCDSCETLD---IKRSCCLCPVKGGALKPTDEG 646 (1005)
T ss_pred CcccccccccccccccceeeeeccccccCCCccccc--CCCCCCCcchhhcccccc---CCchhhhccccCcccCCCCcc
Confidence 445799999988888999999999999999999996 355555689999999751 356799999999999999999
Q ss_pred ccceeeccccCCeeEEeCCCCCccc-cccCccccccCccccccCCCCCCeeEeCCCCCCceEeccccccCCceEE
Q 038708 217 LWAHVVCAVLVPEVFFEDPEGREGI-DCSKVPKTRREKRCYICKSKRGCSVECSEPKCCLSFHVTCGLSEDLCIE 290 (331)
Q Consensus 217 ~wvH~~Cal~~pe~~f~~~~~~~~v-~~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~~g~~~~ 290 (331)
.|+|+.|+.|.++..+.++..|++. ++..+++......|.+ .|.+.+|.. |...||.+||+..++.++
T Consensus 647 r~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~a~~~~~~~~ 715 (1005)
T KOG1080|consen 647 RWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSFLKICFI----HGSCRQCCK--CETGSHAMCASRAGYIME 715 (1005)
T ss_pred chhhhhchhccccccCCCccCCCCcccccccCccchhhhccc----cccccccch--hhhcceehhhcCccChhh
Confidence 9999999999999999999988875 4566666666666666 477778865 999999999999886543
No 10
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.70 E-value=6.8e-09 Score=94.91 Aligned_cols=62 Identities=29% Similarity=0.775 Sum_probs=53.8
Q ss_pred hhhcccccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 127 EIQQEEEEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 127 ~~~~~~~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
.+....+.-.+-..|+||+.++ ++++||+||.|+++||+|||.||+ .+-|+|.|-|..|...
T Consensus 270 avk~yrwqcieck~csicgtse--nddqllfcddcdrgyhmyclsppm-~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 270 AVKTYRWQCIECKYCSICGTSE--NDDQLLFCDDCDRGYHMYCLSPPM-VEPPEGSWSCHLCLEE 331 (336)
T ss_pred HHHhheeeeeecceeccccCcC--CCceeEeecccCCceeeEecCCCc-CCCCCCchhHHHHHHH
Confidence 3445667788888999999876 779999999999999999999985 7899999999999865
No 11
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=98.68 E-value=3.6e-09 Score=68.81 Aligned_cols=34 Identities=53% Similarity=1.519 Sum_probs=20.4
Q ss_pred CCeEEccCCCcccccccccCCCCCCCCCC-cEeCcccc
Q 038708 153 DPIVFCDGCDLMVHATCYGNPLVKEIPDG-DWFCAQCL 189 (331)
Q Consensus 153 ~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~-~W~C~~C~ 189 (331)
|.|+.|++|++.||+.|||+ ..+|++ +|+|+.|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv---~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGV---SEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT----SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCc---ccCCCCCcEECCcCC
Confidence 78999999999999999996 456665 89999985
No 12
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.63 E-value=1.1e-08 Score=71.52 Aligned_cols=49 Identities=39% Similarity=1.060 Sum_probs=40.1
Q ss_pred cccccccccCCCCCCeEEccCCCcccccccccCCCC-CCCCCCcEeCccccc
Q 038708 140 LCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLV-KEIPDGDWFCAQCLA 190 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~-~~ip~~~W~C~~C~~ 190 (331)
+|.||+..+ +++.||.|+.|+..||..|+++++. ..++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~--~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSD--DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSC--TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcC--CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 588999843 7799999999999999999998752 134456999999964
No 13
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.33 E-value=1.7e-07 Score=86.39 Aligned_cols=52 Identities=29% Similarity=0.710 Sum_probs=46.3
Q ss_pred cccccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCc
Q 038708 130 QEEEEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCA 186 (331)
Q Consensus 130 ~~~~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~ 186 (331)
...+.-.+-..|.||+.+. .++.+++||.|+.++|++|+| |..+|.|.|.|+
T Consensus 306 TY~W~C~~C~lC~IC~~P~--~E~E~~FCD~CDRG~HT~CVG---L~~lP~G~WICD 357 (381)
T KOG1512|consen 306 TYFWKCSSCELCRICLGPV--IESEHLFCDVCDRGPHTLCVG---LQDLPRGEWICD 357 (381)
T ss_pred hcchhhcccHhhhccCCcc--cchheeccccccCCCCccccc---cccccCccchhh
Confidence 4566677778899999987 668999999999999999999 689999999999
No 15
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.95 E-value=4e-06 Score=84.95 Aligned_cols=53 Identities=36% Similarity=0.919 Sum_probs=45.8
Q ss_pred cccccccccccCCCCCCeEEccCCCcccccccccCCCC-CCCCCCcEeCccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLV-KEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~-~~ip~~~W~C~~C~~~~ 192 (331)
..+|.-|+..+. -+.+++||+|+..||+.|+.||+. +.||.|.|||+.|....
T Consensus 253 ~~fCsaCn~~~~--F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGL--FNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccc--cccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 349999999753 378899999999999999999952 67999999999999874
No 16
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.67 E-value=2.1e-05 Score=66.90 Aligned_cols=29 Identities=41% Similarity=1.012 Sum_probs=26.2
Q ss_pred ccccccccCCCCCCCCCCcEeCcccccccc
Q 038708 164 MVHATCYGNPLVKEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 164 ~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~ 193 (331)
+||++||.||| ..+|+|+|+|+.|.....
T Consensus 1 g~H~~CL~Ppl-~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPL-KEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCC-CCCCCCCcCCCCCcCCCC
Confidence 58999999996 899999999999998754
No 17
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.54 E-value=3.9e-05 Score=72.32 Aligned_cols=52 Identities=35% Similarity=0.830 Sum_probs=40.6
Q ss_pred cccccccccccccccCCCCCCeEEccC--CC-cccccccccCCCCCCCCCCcEeCccccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDG--CD-LMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~--C~-~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
+.++..+|-.. .. ..+.|+-||+ |+ .+||..|+| |..-|.|.|||+.|....
T Consensus 215 d~~e~~yC~Cn-qv---syg~Mi~CDn~~C~~eWFH~~CVG---L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 215 DPDEPTYCICN-QV---SYGKMIGCDNPGCPIEWFHFTCVG---LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCCCEEEEec-cc---ccccccccCCCCCCcceEEEeccc---cccCCCCcccchhhhhhh
Confidence 34455666443 32 3488999999 99 999999999 577899999999998763
No 18
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.50 E-value=4.6e-05 Score=75.66 Aligned_cols=58 Identities=22% Similarity=0.555 Sum_probs=46.7
Q ss_pred cccccccccccccCCCCCCeEEccCCCcccccccccCCCC---CCCCCCcEeCcccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLV---KEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~---~~ip~~~W~C~~C~~~~~ 193 (331)
..+..|.||..+.....|.||+|++|+..||+.|.-++.. ..-+...|||..|.+...
T Consensus 166 ~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~ 226 (464)
T KOG4323|consen 166 KVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPK 226 (464)
T ss_pred cccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchh
Confidence 3445699999877777789999999999999999977542 223667899999999854
No 19
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.20 E-value=0.00022 Score=65.25 Aligned_cols=52 Identities=38% Similarity=0.972 Sum_probs=40.0
Q ss_pred ccccccccccccccccCCCCCCeEEccC--CCc-ccccccccCCCCCCCCCCcEeCcccccc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCDG--CDL-MVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd~--C~~-~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
.++.+..+| -|... .-++|+-||+ |.. +||..|+| |.+.|.|.|||+.|...
T Consensus 216 ~se~e~lYC-fCqqv---SyGqMVaCDn~nCkrEWFH~~CVG---Lk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 216 NSEGEELYC-FCQQV---SYGQMVACDNANCKREWFHLECVG---LKEPPKGKWYCPECKKA 270 (271)
T ss_pred cccCceeEE-Eeccc---ccccceecCCCCCchhheeccccc---cCCCCCCcEeCHHhHhc
Confidence 334445555 47765 3489999998 876 56999999 68899999999999753
No 20
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.08 E-value=0.00023 Score=74.34 Aligned_cols=54 Identities=28% Similarity=0.882 Sum_probs=45.4
Q ss_pred ccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
+++.+...|.||.++ +.+++||.|...||.+|+++|+ ..+|.++|.|++|....
T Consensus 42 ~~~~~~e~c~ic~~~-----g~~l~c~tC~~s~h~~cl~~pl-~~~p~~~~~c~Rc~~p~ 95 (696)
T KOG0383|consen 42 WDDAEQEACRICADG-----GELLWCDTCPASFHASCLGPPL-TPQPNGEFICPRCFCPK 95 (696)
T ss_pred cchhhhhhhhhhcCC-----CcEEEeccccHHHHHHccCCCC-CcCCccceeeeeeccCC
Confidence 445566789999976 7799999999999999999996 77888889999994443
No 21
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=97.00 E-value=0.00031 Score=68.95 Aligned_cols=127 Identities=19% Similarity=0.307 Sum_probs=83.3
Q ss_pred ccccccCCCCCCCCCCcEeCcccccccccccccccccccCCCCCCccc-cccccceeeccccCCeeEEeCCCCCcccccc
Q 038708 166 HATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCCLCPVGGGAMKPT-KDGLWAHVVCAVLVPEVFFEDPEGREGIDCS 244 (331)
Q Consensus 166 H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGalk~t-~~~~wvH~~Cal~~pe~~f~~~~~~~~v~~~ 244 (331)
|..|.-+.-..+.-...-.++.|.... ...|++++.. .... ....|+|..|++|.+.+.+.....+.+++-.
T Consensus 194 ~~~c~~~~a~ts~~~~~~~~~~c~~~~----e~~~~l~~~~---~~~d~~~~~~~h~~c~~~~~~~~~~q~~~l~~~~~~ 266 (375)
T KOG1084|consen 194 CKLCHEPGAPTSQFDPCDIDDDCNRSR----EFFCALSPKA---TIPDIGFELWYHRYCALWAPNVHESQGGQLTNVDNA 266 (375)
T ss_pred cccccCCCCcccccCCcchhhhhhhhh----hhhhhhcCCC---cCCccchhHHHHHHHHhcCCcceeccCccccCchhh
Confidence 677775432121111223355555553 3367776533 3333 4568999999999999988877555555322
Q ss_pred CccccccCccccccCCCCCCeeEeCCCCCCceEeccccccCCceEEeecCCCCCceEEEcCCCcc
Q 038708 245 KVPKTRREKRCYICKSKRGCSVECSEPKCCLSFHVTCGLSEDLCIEYREGKKGGAVVAGFCKDHT 309 (331)
Q Consensus 245 ~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~~g~~~~~~~~~~~~~~~~~~C~~H~ 309 (331)
... .+.+.|..|.++ |+++.|....|...+|.+|+.......-. ...+++|.+|+
T Consensus 267 v~r--~~~~~c~~c~k~-ga~~~c~~~~~~~~~h~~c~~~~~~~~~~-------~~r~v~~~~h~ 321 (375)
T KOG1084|consen 267 VIR--FPSLQCILCQKP-GATLKCVQASLLSNAHFPCARAKNGIPLD-------YDRKVSCPRHR 321 (375)
T ss_pred hhc--ccchhcccccCC-CCchhhhhhhhhcccCcccccCcccccch-------hhhhccCCCCC
Confidence 221 223799999999 99999999999999999999776543221 13468999999
No 22
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=96.99 E-value=0.00035 Score=71.46 Aligned_cols=57 Identities=25% Similarity=0.717 Sum_probs=48.0
Q ss_pred ccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
+..-.-..|..|+.+. +...+++|+.|++.||.||.-|++ ..|+.|.|+|..|....
T Consensus 63 WrC~~crvCe~c~~~g--D~~kf~~Ck~cDvsyh~yc~~P~~-~~v~sg~~~ckk~~~c~ 119 (694)
T KOG4443|consen 63 WRCPSCRVCEACGTTG--DPKKFLLCKRCDVSYHCYCQKPPN-DKVPSGPWLCKKCTRCR 119 (694)
T ss_pred cccCCceeeeeccccC--CcccccccccccccccccccCCcc-ccccCcccccHHHHhhh
Confidence 5556667888888543 779999999999999999998885 89999999999987763
No 23
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.88 E-value=0.00021 Score=80.21 Aligned_cols=56 Identities=27% Similarity=0.765 Sum_probs=48.2
Q ss_pred ccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~ 193 (331)
......|.||.... ..+.|+.|+.|+.++|++|+-|. +.++|.|+|+|+.|.....
T Consensus 1105 s~~~~~c~~cr~k~--~~~~m~lc~~c~~~~h~~C~rp~-~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKK--QDEKMLLCDECLSGFHLFCLRPA-LSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred ccchhhhhhhhhcc--cchhhhhhHhhhhhHHHHhhhhh-hccCCcCCccCCccchhhh
Confidence 34557899999875 44889999999999999999765 6999999999999999863
No 24
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.64 E-value=0.0016 Score=64.87 Aligned_cols=137 Identities=17% Similarity=0.233 Sum_probs=86.8
Q ss_pred ccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccccccccccccccCCCCCCcccccc
Q 038708 137 DGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCCLCPVGGGAMKPTKDG 216 (331)
Q Consensus 137 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGalk~t~~~ 216 (331)
....|.||.......++.+..|+.|..+||+.|--+. ....+.|.+..|..... ...||++|...
T Consensus 82 ~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~---~~~~~~~~~~~c~~~~~----------~~~g~a~K~g~-- 146 (464)
T KOG4323|consen 82 SELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPR---FPSLDIGESTECVFPIF----------SQEGGALKKGR-- 146 (464)
T ss_pred cccCCcccccccccCchhhhhhhhhccCcccccCccC---cCcCCcccccccccccc----------ccccccccccc--
Confidence 4467999998766678899999999999999998643 23346788888888742 45677777643
Q ss_pred ccceeeccccCCeeEEeCCCCCccccccCccccccCccccccCCCC----CCeeEeCCCCCCceEeccccccCCceEEee
Q 038708 217 LWAHVVCAVLVPEVFFEDPEGREGIDCSKVPKTRREKRCYICKSKR----GCSVECSEPKCCLSFHVTCGLSEDLCIEYR 292 (331)
Q Consensus 217 ~wvH~~Cal~~pe~~f~~~~~~~~v~~~~i~~~~~~~~C~iC~~~~----G~~i~C~~~~C~~~fHv~CA~~~g~~~~~~ 292 (331)
-+| +.+.+... ..++.... ...+.|+||...+ -.+|+|.. |.++||-.|-...---+.+.
T Consensus 147 -~a~-------~~l~y~~~----~l~wD~~~--~~n~qc~vC~~g~~~~~NrmlqC~~--C~~~fHq~Chqp~i~~~l~~ 210 (464)
T KOG4323|consen 147 -LAR-------PSLPYPEA----SLDWDSGH--KVNLQCSVCYCGGPGAGNRMLQCDK--CRQWYHQACHQPLIKDELAG 210 (464)
T ss_pred -ccc-------ccccCccc----ccccCccc--cccceeeeeecCCcCccceeeeecc--cccHHHHHhccCCCCHhhcc
Confidence 344 11222111 01111111 1234599998531 25899976 99999999987654333322
Q ss_pred cCCCCCceEEEcCCCcc
Q 038708 293 EGKKGGAVVAGFCKDHT 309 (331)
Q Consensus 293 ~~~~~~~~~~~~C~~H~ 309 (331)
...+..||..=.
T Consensus 211 -----D~~~~w~C~~C~ 222 (464)
T KOG4323|consen 211 -----DPFYEWFCDVCN 222 (464)
T ss_pred -----CccceEeehhhc
Confidence 234566776543
No 25
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.44 E-value=0.00098 Score=66.23 Aligned_cols=49 Identities=29% Similarity=0.866 Sum_probs=42.1
Q ss_pred ccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCC----cEeCccc
Q 038708 137 DGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDG----DWFCAQC 188 (331)
Q Consensus 137 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~----~W~C~~C 188 (331)
....|.||.... +...+++||.|+..||.-||.||| ..+|.. .|.|..|
T Consensus 543 ~~ysCgiCkks~--dQHll~~CDtC~lhYHlGCL~PPL-TR~Pkk~kn~gWqCsEC 595 (707)
T KOG0957|consen 543 MNYSCGICKKST--DQHLLTQCDTCHLHYHLGCLSPPL-TRLPKKNKNFGWQCSEC 595 (707)
T ss_pred cceeeeeeccch--hhHHHhhcchhhceeeccccCCcc-ccCcccccCcceeeccc
Confidence 445699999865 679999999999999999999996 677753 5999999
No 26
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=96.41 E-value=0.0031 Score=54.55 Aligned_cols=70 Identities=29% Similarity=0.693 Sum_probs=50.9
Q ss_pred ccccccc-ccCCCCCCeEEccCCCcccccccccCCC-----CCCCCCCc--EeCccccccccc-----ccccccccccCC
Q 038708 140 LCAVCQS-TDGDSKDPIVFCDGCDLMVHATCYGNPL-----VKEIPDGD--WFCAQCLAANDE-----NRAFSCCLCPVG 206 (331)
Q Consensus 140 ~C~vC~~-~~~~~~~~ll~Cd~C~~~~H~~C~g~p~-----~~~ip~~~--W~C~~C~~~~~~-----~~~~~C~lC~~~ 206 (331)
.|.+|+. +++.+-+.|++|.||-.+||..|+|+-. +..|-+++ ..|..|...... .....|..|...
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 4889975 4566789999999999999999999843 23344443 578888877421 256678889877
Q ss_pred CCC
Q 038708 207 GGA 209 (331)
Q Consensus 207 gGa 209 (331)
|-+
T Consensus 81 G~~ 83 (175)
T PF15446_consen 81 GPS 83 (175)
T ss_pred CCC
Confidence 643
No 27
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=93.69 E-value=0.044 Score=59.54 Aligned_cols=111 Identities=19% Similarity=0.378 Sum_probs=73.8
Q ss_pred cccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccccccccccccccCCCCCCccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCCLCPVGGGAMKPTKDGL 217 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGalk~t~~~~ 217 (331)
+..|.+|.+. +.+++|..|+..||..|..+|. .++|..+|-|..|...+-+ ....|+|=+.+.+...|...
T Consensus 344 ddhcrf~~d~-----~~~lc~Et~prvvhlEcv~hP~-~~~~s~~~e~evc~~hkvn-gvvd~vl~~~K~~~~iR~~~-- 414 (1414)
T KOG1473|consen 344 DDHCRFCHDL-----GDLLCCETCPRVVHLECVFHPR-FAVPSAFWECEVCNIHKVN-GVVDCVLPPSKNVDSIRHTP-- 414 (1414)
T ss_pred cccccccCcc-----cceeecccCCceEEeeecCCcc-ccCCCccchhhhhhhhccC-cccccccChhhcccceeccC--
Confidence 4579999964 7899999999999999999985 8899999999999876421 33345554444333322211
Q ss_pred cceeeccccCCeeEEeCCCCCccccccCcccccc--CccccccCCCCCCeeEeCCCCCCceEec-ccc
Q 038708 218 WAHVVCAVLVPEVFFEDPEGREGIDCSKVPKTRR--EKRCYICKSKRGCSVECSEPKCCLSFHV-TCG 282 (331)
Q Consensus 218 wvH~~Cal~~pe~~f~~~~~~~~v~~~~i~~~~~--~~~C~iC~~~~G~~i~C~~~~C~~~fHv-~CA 282 (331)
+.......+-| ...|.+|+.. |..+ |.++.|.+.||. .|.
T Consensus 415 -----------------------iG~dr~gr~ywfi~rrl~Ie~~d-et~l-~yysT~pqly~ll~cL 457 (1414)
T KOG1473|consen 415 -----------------------IGRDRYGRKYWFISRRLRIEGMD-ETLL-WYYSTCPQLYHLLRCL 457 (1414)
T ss_pred -----------------------CCcCccccchhceeeeeEEecCC-CcEE-EEecCcHHHHHHHHHh
Confidence 00000000111 2468888855 6656 666789999999 775
No 29
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=93.49 E-value=0.05 Score=38.43 Aligned_cols=33 Identities=33% Similarity=0.733 Sum_probs=28.2
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
...|.+|+.. ..+++.++.|..|+..||..||.
T Consensus 5 ~~~C~~Cg~~-~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKK-FKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCc-ccCCCCEEECCCCCCcccHHHHh
Confidence 4689999985 33568899999999999999995
No 30
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=93.13 E-value=0.031 Score=51.87 Aligned_cols=76 Identities=25% Similarity=0.565 Sum_probs=53.3
Q ss_pred EeCcccccccc-------cccccccccccCCCCCCccccccccceeeccccCCeeEEeCCCCCccccccCccccccC---
Q 038708 183 WFCAQCLAAND-------ENRAFSCCLCPVGGGAMKPTKDGLWAHVVCAVLVPEVFFEDPEGREGIDCSKVPKTRRE--- 252 (331)
Q Consensus 183 W~C~~C~~~~~-------~~~~~~C~lC~~~gGalk~t~~~~wvH~~Cal~~pe~~f~~~~~~~~v~~~~i~~~~~~--- 252 (331)
-||+.|+.... +...++|.-|+++| |.+|+-|++.+.. .+..+||+
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsg------------hpsclqft~nm~~------------avk~yrwqcie 280 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSG------------HPSCLQFTANMIA------------AVKTYRWQCIE 280 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCC------------CcchhhhhHHHHH------------HHHhheeeeee
Confidence 58888877742 23566777776665 9999999875431 33445554
Q ss_pred -ccccccCCCC--CCeeEeCCCCCCceEecccccc
Q 038708 253 -KRCYICKSKR--GCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 253 -~~C~iC~~~~--G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
..|++|+.+. .-.+-|.. |.+-||..|.-.
T Consensus 281 ck~csicgtsenddqllfcdd--cdrgyhmyclsp 313 (336)
T KOG1244|consen 281 CKYCSICGTSENDDQLLFCDD--CDRGYHMYCLSP 313 (336)
T ss_pred cceeccccCcCCCceeEeecc--cCCceeeEecCC
Confidence 4788888763 45678986 999999999754
No 31
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=93.02 E-value=0.1 Score=35.92 Aligned_cols=30 Identities=23% Similarity=0.628 Sum_probs=24.3
Q ss_pred cccccCCC--CCCeeEeCCCCCCceEeccccccC
Q 038708 254 RCYICKSK--RGCSVECSEPKCCLSFHVTCGLSE 285 (331)
Q Consensus 254 ~C~iC~~~--~G~~i~C~~~~C~~~fHv~CA~~~ 285 (331)
.|.+|+.. .+.+|+|.. |.++||..|.-..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~--C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDS--CNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTSSCTTSSEEEBST--TSCEEETTTSTSS
T ss_pred eCcCCCCcCCCCCeEEcCC--CChhhCcccCCCC
Confidence 37788874 477999985 9999999998554
No 32
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=89.44 E-value=0.18 Score=53.12 Aligned_cols=78 Identities=26% Similarity=0.496 Sum_probs=54.0
Q ss_pred CCCcccccccccCCCCCCCCCCcEeCcccccccccccccccccccCCCCCCccccccccceeeccccCCeeEEeCCCCCc
Q 038708 160 GCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCCLCPVGGGAMKPTKDGLWAHVVCAVLVPEVFFEDPEGRE 239 (331)
Q Consensus 160 ~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGalk~t~~~~wvH~~Cal~~pe~~f~~~~~~~ 239 (331)
.|.+++|..|..|. +..-|+++|.|+.|....... |. .+..
T Consensus 1 ~~~r~~~~~~~~p~-~~~~~~~~~k~~~~e~~~~~~------------------------~~-----------~~~~--- 41 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPK-LKEEPEMDPKCPGCESSSAQV------------------------EA-----------KDDD--- 41 (696)
T ss_pred CCCcccCcCCCCcc-cccCCcCCccCcchhhccccc------------------------cc-----------ccCC---
Confidence 37899999999754 455668999999998763210 00 0000
Q ss_pred cccccCccccccCccccccCCCCCCeeEeCCCCCCceEeccccccCC
Q 038708 240 GIDCSKVPKTRREKRCYICKSKRGCSVECSEPKCCLSFHVTCGLSED 286 (331)
Q Consensus 240 ~v~~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~~g 286 (331)
........|.+|... |..+-|.. |..+||..|.-.-+
T Consensus 42 -------~~~~~~e~c~ic~~~-g~~l~c~t--C~~s~h~~cl~~pl 78 (696)
T KOG0383|consen 42 -------WDDAEQEACRICADG-GELLWCDT--CPASFHASCLGPPL 78 (696)
T ss_pred -------cchhhhhhhhhhcCC-CcEEEecc--ccHHHHHHccCCCC
Confidence 111223579999988 88888986 99999999985443
No 33
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=89.30 E-value=0.14 Score=52.88 Aligned_cols=53 Identities=21% Similarity=0.638 Sum_probs=40.1
Q ss_pred ccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
..|-+|+......++.|+.|..|...||.+|+..-+-..+-.+-|.|+.|..-
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 56888888766788999999999999999999743211122344999999763
No 34
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=84.55 E-value=0.69 Score=43.66 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=25.2
Q ss_pred CccccccCCCCCCeeEeCCCCCC-ceEecccc
Q 038708 252 EKRCYICKSKRGCSVECSEPKCC-LSFHVTCG 282 (331)
Q Consensus 252 ~~~C~iC~~~~G~~i~C~~~~C~-~~fHv~CA 282 (331)
..+|.......|.||.|...+|. .|||..|.
T Consensus 219 ~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV 250 (274)
T KOG1973|consen 219 PTYCICNQVSYGKMIGCDNPGCPIEWFHFTCV 250 (274)
T ss_pred CEEEEecccccccccccCCCCCCcceEEEecc
Confidence 34555444557999999999999 99999997
No 35
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.55 E-value=0.73 Score=43.33 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=37.6
Q ss_pred cccccccccccccC----CCCCCeEEccCCCcccccccccCCC--CCCCCCCcEeCcccc
Q 038708 136 DDGILCAVCQSTDG----DSKDPIVFCDGCDLMVHATCYGNPL--VKEIPDGDWFCAQCL 189 (331)
Q Consensus 136 ~~~~~C~vC~~~~~----~~~~~ll~Cd~C~~~~H~~C~g~p~--~~~ip~~~W~C~~C~ 189 (331)
.....|.+|..... ...+.|+.|..|..++|.+|+.-+. ...+-...|.|..|.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~ 315 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE 315 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH
Confidence 34456999987531 3458899999999999999997431 112234568877774
No 36
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=79.38 E-value=1.5 Score=48.27 Aligned_cols=55 Identities=35% Similarity=0.834 Sum_probs=45.3
Q ss_pred cccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
...+...|..|..+..+ ..+ .|++|...+|.+|..+++ ..+++++|.|+.|....
T Consensus 151 ~~~~~~~~~~~~k~~~~--~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 205 (904)
T KOG1246|consen 151 EFIDYPQCNTCSKGKEE--KLL-LCDSCDDSYHTYCLRPPL-TRVPDGDWRCPKCIPTP 205 (904)
T ss_pred ccccchhhhccccCCCc--cce-ecccccCcccccccCCCC-CcCCcCcccCCcccccc
Confidence 34455679999987533 445 999999999999999885 88999999999999883
No 37
>PHA02926 zinc finger-like protein; Provisional
Probab=77.36 E-value=0.93 Score=41.32 Aligned_cols=30 Identities=13% Similarity=-0.067 Sum_probs=25.6
Q ss_pred ccccccccccccchhhhhhh------cCCCCCCCCC
Q 038708 36 QESDESTAKNLCLPAKKRKY------CFYPPPLPSS 65 (331)
Q Consensus 36 ~~~~~~~~~~~ci~~w~~~~------~~cPlc~~~f 65 (331)
...+++.+++.||..|++.. ..||+|+..|
T Consensus 194 L~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 194 LDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 35888999999999999853 4599999999
No 38
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=76.76 E-value=0.64 Score=30.90 Aligned_cols=24 Identities=8% Similarity=-0.000 Sum_probs=20.4
Q ss_pred cccccccccchhhhhhhcCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPL 62 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~ 62 (331)
..+.+...||.+|.+...+||+|+
T Consensus 21 C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 21 CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCeeCHHHHHHHHHhCCcCCccC
Confidence 677778999999999999999985
No 39
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.30 E-value=0.94 Score=42.67 Aligned_cols=21 Identities=10% Similarity=-0.127 Sum_probs=19.8
Q ss_pred cccchhhhhhhcCCCCCCCCC
Q 038708 45 NLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 45 ~~ci~~w~~~~~~cPlc~~~f 65 (331)
-.||++|......||+|+..|
T Consensus 263 WsCI~~w~~ek~eCPlCR~~~ 283 (293)
T KOG0317|consen 263 WSCILEWCSEKAECPLCREKF 283 (293)
T ss_pred HHHHHHHHccccCCCcccccC
Confidence 679999999999999999999
No 40
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=75.75 E-value=1.8 Score=34.91 Aligned_cols=66 Identities=23% Similarity=0.551 Sum_probs=41.2
Q ss_pred cccccccccccccCCCCCCeEEc------cCCCcccccccccC-------CCCCCCCCCcEeCccccccccccccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFC------DGCDLMVHATCYGN-------PLVKEIPDGDWFCAQCLAANDENRAFSCCL 202 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~C------d~C~~~~H~~C~g~-------p~~~~ip~~~W~C~~C~~~~~~~~~~~C~l 202 (331)
.....|..|.... .+....| ..|...-=.||++- ...+.+.+.+|.||.|+.. -+|.+
T Consensus 5 ~~g~~CHqCrqKt---~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi------CnCs~ 75 (105)
T PF10497_consen 5 VNGKTCHQCRQKT---LDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI------CNCSF 75 (105)
T ss_pred CCCCCchhhcCCC---CCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe------eCCHh
Confidence 3456788888753 2445667 66733333455542 1112245678999999986 45889
Q ss_pred ccCCCCCC
Q 038708 203 CPVGGGAM 210 (331)
Q Consensus 203 C~~~gGal 210 (331)
|.++.|..
T Consensus 76 Crrk~g~~ 83 (105)
T PF10497_consen 76 CRRKRGWA 83 (105)
T ss_pred hhccCCCC
Confidence 98876543
No 41
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=75.57 E-value=2.8 Score=42.78 Aligned_cols=52 Identities=27% Similarity=0.751 Sum_probs=36.1
Q ss_pred CCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccccc-------cccc-ccccccCCCCCC
Q 038708 153 DPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDE-------NRAF-SCCLCPVGGGAM 210 (331)
Q Consensus 153 ~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~-------~~~~-~C~lC~~~gGal 210 (331)
..|++|..|...-..+|... +| .-|||+.|...... .... +|+-||.=.+.|
T Consensus 3 ~~L~fC~~C~~irc~~c~~~----Ei--~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L 62 (483)
T PF05502_consen 3 EELYFCEHCHKIRCPRCVSE----EI--DSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPL 62 (483)
T ss_pred ccceecccccccCChhhccc----cc--ceeECccccccCChhhheeccceeccccccCCCCCCcc
Confidence 46889999988888888863 33 47999999988532 1232 567776544444
No 42
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=75.11 E-value=1.3 Score=27.13 Aligned_cols=28 Identities=25% Similarity=0.624 Sum_probs=12.2
Q ss_pred cccccccccCCCCCCeEEccCCCccccccc
Q 038708 140 LCAVCQSTDGDSKDPIVFCDGCDLMVHATC 169 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C 169 (331)
.|.+|+.... .+....|..|+..+|..|
T Consensus 2 ~C~~C~~~~~--~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID--GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC--CCceEECccCCCccChhc
Confidence 5889998642 258999999999999887
No 43
>PHA02929 N1R/p28-like protein; Provisional
Probab=74.38 E-value=1.3 Score=41.03 Aligned_cols=28 Identities=11% Similarity=-0.049 Sum_probs=25.3
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
.+.+.+...||..|.+..+.||+|+..|
T Consensus 199 ~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 199 NCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 4677778999999999999999999998
No 44
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=74.18 E-value=3.3 Score=28.44 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=26.4
Q ss_pred ccccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 137 DGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 137 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
....|.+|+..=......-+.|..|+..+|..|+.
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 34689999985322557889999999999999996
No 45
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=74.11 E-value=1.5 Score=32.57 Aligned_cols=34 Identities=29% Similarity=0.647 Sum_probs=13.5
Q ss_pred ccccccccccC-CCCCCeEEcc--CCCcccccccccC
Q 038708 139 ILCAVCQSTDG-DSKDPIVFCD--GCDLMVHATCYGN 172 (331)
Q Consensus 139 ~~C~vC~~~~~-~~~~~ll~Cd--~C~~~~H~~C~g~ 172 (331)
..|.||..... .+.-..+.|+ .|+..+|..||--
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 46999998643 3344568898 8999999999964
No 46
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=73.10 E-value=0.47 Score=35.97 Aligned_cols=52 Identities=27% Similarity=0.696 Sum_probs=26.7
Q ss_pred cccccccccccc--CCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 137 DGILCAVCQSTD--GDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 137 ~~~~C~vC~~~~--~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
+..+|.||++.- ..+++..+.|..|...+-..||. .+.-+|.-.|++|....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyE----YErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYE----YERKEGNQVCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHH----HHHHTS-SB-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHH----HHhhcCcccccccCCCc
Confidence 346899999842 46789999999999999999996 45667888899998654
No 47
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=70.07 E-value=3.8 Score=36.85 Aligned_cols=44 Identities=32% Similarity=0.819 Sum_probs=33.6
Q ss_pred ccccccccccc---CCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 138 GILCAVCQSTD---GDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 138 ~~~C~vC~~~~---~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
.-+|.+|.+.+ .-+.+....|..|...+|..|+.. . .||.|...
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---~-------~CpkC~R~ 198 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---K-------SCPKCARR 198 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---C-------CCCCcHhH
Confidence 35799999765 234467899999999999999962 1 29998765
No 48
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=68.91 E-value=4.7 Score=24.71 Aligned_cols=27 Identities=26% Similarity=0.737 Sum_probs=21.3
Q ss_pred cccccccccCCCCCC-eEEccCCCccccccc
Q 038708 140 LCAVCQSTDGDSKDP-IVFCDGCDLMVHATC 169 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~-ll~Cd~C~~~~H~~C 169 (331)
.|.+|++.- ++. ...|+.|+..+|..|
T Consensus 2 ~C~~C~~~~---~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI---DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc---CCCEeEEeCCCCCeEcCcc
Confidence 489998742 244 889999999999887
No 49
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=68.88 E-value=6.1 Score=24.19 Aligned_cols=27 Identities=44% Similarity=1.163 Sum_probs=21.6
Q ss_pred cccccCCCC-CC-eeEeCCCCCCceEecccc
Q 038708 254 RCYICKSKR-GC-SVECSEPKCCLSFHVTCG 282 (331)
Q Consensus 254 ~C~iC~~~~-G~-~i~C~~~~C~~~fHv~CA 282 (331)
.|.+|++.. |. ...|.. |.-.+|+.||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~--c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSE--CCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCC--CCCeEcCccC
Confidence 588998863 66 788954 8899999997
No 50
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=67.33 E-value=1.9 Score=34.54 Aligned_cols=29 Identities=7% Similarity=-0.057 Sum_probs=26.6
Q ss_pred cccccccccccchhhhhhhcCCCCCCCCC
Q 038708 37 ESDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 37 ~~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
.++|+.+.|-||..|-+-.++|||+.+.-
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 48899999999999999999999998765
No 51
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=66.92 E-value=1.9 Score=32.22 Aligned_cols=25 Identities=8% Similarity=-0.049 Sum_probs=21.4
Q ss_pred ccccccccccchhhhhhhcCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPL 62 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~ 62 (331)
...+.+.+.||..|-+..+.||+|+
T Consensus 49 ~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 49 PCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp TTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred ccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4677788999999999999999996
No 52
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=66.42 E-value=3.5 Score=27.64 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=26.3
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
...|.+|...-..-...-+.|+.|+..+|..|..
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 4579999975321225778899999999999985
No 53
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=66.39 E-value=4.8 Score=28.50 Aligned_cols=38 Identities=32% Similarity=0.669 Sum_probs=31.9
Q ss_pred ccccccCCCC---CCeeEeCCCCCCceEeccccccCCceEEee
Q 038708 253 KRCYICKSKR---GCSVECSEPKCCLSFHVTCGLSEDLCIEYR 292 (331)
Q Consensus 253 ~~C~iC~~~~---G~~i~C~~~~C~~~fHv~CA~~~g~~~~~~ 292 (331)
.+|.+|+... +-.+.|-. |...||-.|....|.++.+.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~--CgapyHR~C~~~~g~C~~~~ 46 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPE--CGAPYHRDCWEKAGGCINYS 46 (54)
T ss_pred ccChhhCCcccCCCCEEECCC--CCCcccHHHHhhCCceEecc
Confidence 5799999874 56889965 99999999999999887654
No 54
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=63.22 E-value=3.3 Score=27.73 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=15.3
Q ss_pred ccccCCCCCCeeEeCCCCCCceEeccccc
Q 038708 255 CYICKSKRGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 255 C~iC~~~~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
|.+|+.-.-.-+.|....|...+|..|+.
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~ 29 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFK 29 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHH
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHH
Confidence 56677654445789988999999999984
No 55
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=62.41 E-value=4.6 Score=23.55 Aligned_cols=24 Identities=33% Similarity=0.762 Sum_probs=17.4
Q ss_pred CcEeCcccccccccccccccccccC
Q 038708 181 GDWFCAQCLAANDENRAFSCCLCPV 205 (331)
Q Consensus 181 ~~W~C~~C~~~~~~~~~~~C~lC~~ 205 (331)
|+|.|+.|.+... .....|..|..
T Consensus 1 g~W~C~~C~~~N~-~~~~~C~~C~~ 24 (26)
T smart00547 1 GDWECPACTFLNF-ASRSKCFACGA 24 (26)
T ss_pred CcccCCCCCCcCh-hhhccccccCC
Confidence 5899999976632 35667888864
No 56
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=61.68 E-value=4.3 Score=24.74 Aligned_cols=25 Identities=32% Similarity=0.852 Sum_probs=17.3
Q ss_pred CCcEeCcccccccccccccccccccC
Q 038708 180 DGDWFCAQCLAANDENRAFSCCLCPV 205 (331)
Q Consensus 180 ~~~W~C~~C~~~~~~~~~~~C~lC~~ 205 (331)
.|+|.|+.|.+.. ......|..|..
T Consensus 2 ~g~W~C~~C~~~N-~~~~~~C~~C~~ 26 (30)
T PF00641_consen 2 EGDWKCPSCTFMN-PASRSKCVACGA 26 (30)
T ss_dssp SSSEEETTTTEEE-ESSSSB-TTT--
T ss_pred CcCccCCCCcCCc-hHHhhhhhCcCC
Confidence 5799999999773 346778988864
No 57
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=59.39 E-value=6.8 Score=36.41 Aligned_cols=29 Identities=28% Similarity=0.612 Sum_probs=24.2
Q ss_pred cccccCCC-CCCeeEeCCCCCC-ceEecccc
Q 038708 254 RCYICKSK-RGCSVECSEPKCC-LSFHVTCG 282 (331)
Q Consensus 254 ~C~iC~~~-~G~~i~C~~~~C~-~~fHv~CA 282 (331)
.-+||+.- -|-||.|+..+|. .|||..|.
T Consensus 222 lYCfCqqvSyGqMVaCDn~nCkrEWFH~~CV 252 (271)
T COG5034 222 LYCFCQQVSYGQMVACDNANCKREWFHLECV 252 (271)
T ss_pred eEEEecccccccceecCCCCCchhheecccc
Confidence 34467764 6999999999998 89999997
No 58
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=58.25 E-value=4.1 Score=27.00 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=25.2
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
...|.+|+..-.. ....+.|..|+..+|..|..
T Consensus 11 ~~~C~~C~~~i~~-~~~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 11 PTKCCVCRKSIWG-SFQGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCccccccccCc-CCCCcCCCCCCchHHHHHHh
Confidence 4579999985321 11478899999999999985
No 59
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=58.04 E-value=7.1 Score=30.55 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=22.3
Q ss_pred ccccccCCCCCCeeEeCCCCCCceEeccccc
Q 038708 253 KRCYICKSKRGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 253 ~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
..|.+|+++.|... .....|...||..|+.
T Consensus 79 ~~C~vC~k~l~~~~-f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 79 TKCSVCGKPLGNSV-FVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCccCcCCcCCCce-EEEeCCCeEEeccccc
Confidence 47999999977533 2334577999999974
No 60
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=56.24 E-value=5.9 Score=29.35 Aligned_cols=33 Identities=39% Similarity=0.726 Sum_probs=13.9
Q ss_pred ccccccCCCC---C--CeeEeCCCCCCceEeccccccC
Q 038708 253 KRCYICKSKR---G--CSVECSEPKCCLSFHVTCGLSE 285 (331)
Q Consensus 253 ~~C~iC~~~~---G--~~i~C~~~~C~~~fHv~CA~~~ 285 (331)
..|.||.... + ..+.|....|...||..|....
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~w 40 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEW 40 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHH
Confidence 4688898742 2 3478999999999999998553
No 61
>PLN02400 cellulose synthase
Probab=53.86 E-value=10 Score=42.22 Aligned_cols=53 Identities=30% Similarity=0.701 Sum_probs=44.4
Q ss_pred ccccccccccc--cCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccc
Q 038708 137 DGILCAVCQST--DGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 137 ~~~~C~vC~~~--~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~ 193 (331)
+..+|.||++. -..+++..+-|.-|.-.|-..||. .+.-+|.=.||+|.....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE----YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE----YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh----eecccCCccCcccCCccc
Confidence 34589999984 246788999999999999999995 567789999999998754
No 62
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=53.11 E-value=7.4 Score=31.01 Aligned_cols=30 Identities=23% Similarity=0.716 Sum_probs=26.0
Q ss_pred cccccccccccCCCCCCeEEccC--CCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDG--CDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~g 171 (331)
...|.+|+... +..+.|.. |..+||..|.-
T Consensus 55 ~~~C~iC~~~~----G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSG----GACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCC----ceeEEcCCCCCCcCCCHHHHH
Confidence 46899999853 77999998 99999999975
No 63
>PF10621 FpoO: F420H2 dehydrogenase subunit FpoO ; InterPro: IPR018288 This entry represents the FpoO subunit of membrane-bound multi-subunit F420H2 dehydrogenase, which oxidises the reduced coenzyme F420H2 to coenzyme F420 and feeds the electrons via an FeS cluster into an energy-conserving electron transport chain [, ]. This enzyme plays a role in the methanogenic pathway in methanogenic archaea. Reduced coenzyme F420H2 is the major cytoplasmic electron carrier of methanogens and a reversible hydride donor, much like NADH []. F420H2 + COB-S-S-CoM = F420 + CoM-SH + CoB-SH Where CoB-S-S-CoM (the heterosulphide of 2-mercaptoethanesulphonate and 7-mercaptoheptanoylthreonine phosphate) is the terminal electron acceptor of the methanogenic pathway, and is reduced with the concomitant generation of a transmembrane proton potential and ATP synthesis. The FpoO subunit of F420H2 dehydrogenase probably participates in the reduction of methanophenazine, where it acts as a special mechanism for the reduction of the methanogenic cofactor [].
Probab=51.17 E-value=2.9 Score=33.85 Aligned_cols=51 Identities=29% Similarity=0.714 Sum_probs=31.5
Q ss_pred ccCCCcccccccc----cCCCCCCCCCCcE--eCccccccccc-----------ccccccccccCCCC
Q 038708 158 CDGCDLMVHATCY----GNPLVKEIPDGDW--FCAQCLAANDE-----------NRAFSCCLCPVGGG 208 (331)
Q Consensus 158 Cd~C~~~~H~~C~----g~p~~~~ip~~~W--~C~~C~~~~~~-----------~~~~~C~lC~~~gG 208 (331)
||.|+.+.-+-|- .|-+...-|+|-| +|+.|+..... -....|.||+.+.+
T Consensus 4 CdLCg~~~Pt~~PvrV~~Pr~~~~yPeGvwKGLC~~CL~sa~~ty~e~~~~~~s~~~gKC~LCG~kt~ 71 (119)
T PF10621_consen 4 CDLCGRAIPTVCPVRVFAPRLTLAYPEGVWKGLCETCLDSAEKTYQEVNENESSCRSGKCDLCGKKTQ 71 (119)
T ss_pred cchhcCcCCceeEEEeecchhhccCcchHHHhhHHHHHHHHHHHHHHHhcccccccccceeccCCcce
Confidence 5555555444331 1212245688987 89999987431 26778999987753
No 64
>PF12773 DZR: Double zinc ribbon
Probab=49.54 E-value=12 Score=25.32 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=6.8
Q ss_pred CcEeCcccccc
Q 038708 181 GDWFCAQCLAA 191 (331)
Q Consensus 181 ~~W~C~~C~~~ 191 (331)
..++|+.|-..
T Consensus 28 ~~~~C~~Cg~~ 38 (50)
T PF12773_consen 28 SKKICPNCGAE 38 (50)
T ss_pred CCCCCcCCcCC
Confidence 34666666665
No 65
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=49.24 E-value=12 Score=37.48 Aligned_cols=34 Identities=24% Similarity=0.539 Sum_probs=21.8
Q ss_pred ccccccccCCCCCCc------cccccccceeeccccCCee
Q 038708 197 AFSCCLCPVGGGAMK------PTKDGLWAHVVCAVLVPEV 230 (331)
Q Consensus 197 ~~~C~lC~~~gGalk------~t~~~~wvH~~Cal~~pe~ 230 (331)
...|.+|..-+-+.- .-..|.|+|.-||+-...+
T Consensus 128 ~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i 167 (446)
T PF07227_consen 128 RCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELI 167 (446)
T ss_pred cCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccc
Confidence 335777765443222 1237899999999987533
No 66
>PLN02436 cellulose synthase A
Probab=49.03 E-value=12 Score=41.57 Aligned_cols=53 Identities=28% Similarity=0.659 Sum_probs=44.1
Q ss_pred cccccccccccc--CCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccc
Q 038708 137 DGILCAVCQSTD--GDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 137 ~~~~C~vC~~~~--~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~ 193 (331)
...+|.||++.- ..+++..+-|.-|+-.+-..||. .+.-+|.=.||+|.....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye----yer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE----YERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhh----hhhhcCCccCcccCCchh
Confidence 345899999842 46788999999999999999995 567789999999988754
No 67
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=48.94 E-value=11 Score=41.86 Aligned_cols=53 Identities=32% Similarity=0.698 Sum_probs=44.2
Q ss_pred cccccccccccc--CCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccc
Q 038708 137 DGILCAVCQSTD--GDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 137 ~~~~C~vC~~~~--~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~ 193 (331)
+..+|.||++.- ..+++..+-|.-|.-.|-..||. .+.-+|.=-||+|.....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE----YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE----YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhh----hhhhcCCccCCccCCchh
Confidence 345899999842 46778999999999999999995 567889999999988753
No 68
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=48.52 E-value=4.7 Score=40.07 Aligned_cols=158 Identities=20% Similarity=0.324 Sum_probs=85.7
Q ss_pred ccccccccccCCCCCCeEEccCCCcccccccccCCC---------CCCCCCCcEeCcccccccccccccccccccCCCCC
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPL---------VKEIPDGDWFCAQCLAANDENRAFSCCLCPVGGGA 209 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~---------~~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGa 209 (331)
..|.-|+.+-. +.-.-|..=+..||..|..--. ... -++.-||..|... ..-+|..|+.---.
T Consensus 275 ~iC~~C~K~V~---g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~-v~~k~~CE~cyq~----tlekC~~Cg~~I~d 346 (468)
T KOG1701|consen 275 GICAFCHKTVS---GQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQ-VDGKPYCEGCYQD----TLEKCNKCGEPIMD 346 (468)
T ss_pred hhhhhcCCccc---CcchHHHHhhhhhcccceehHhhhhhhccccccc-cCCcccchHHHHH----HHHHHhhhhhHHHH
Confidence 37888887521 3333455556677877764210 122 3477899999877 46678889754211
Q ss_pred Cccccccccceeeccc------cCCeeEEeCCCCCcccc-ccCccccccCccccccCCCC----CC----eeEeCCCCCC
Q 038708 210 MKPTKDGLWAHVVCAV------LVPEVFFEDPEGREGID-CSKVPKTRREKRCYICKSKR----GC----SVECSEPKCC 274 (331)
Q Consensus 210 lk~t~~~~wvH~~Cal------~~pe~~f~~~~~~~~v~-~~~i~~~~~~~~C~iC~~~~----G~----~i~C~~~~C~ 274 (331)
+..-.-|+.+|.-|.. -+.++-|.-.. -+.|- +... -+.+.-+|++|...+ |. -|.+ =.
T Consensus 347 ~iLrA~GkayHp~CF~Cv~C~r~ldgipFtvd~-~n~v~Cv~df-h~kfAPrCs~C~~PI~P~~G~~etvRvva----md 420 (468)
T KOG1701|consen 347 RILRALGKAYHPGCFTCVVCARCLDGIPFTVDS-QNNVYCVPDF-HKKFAPRCSVCGNPILPRDGKDETVRVVA----MD 420 (468)
T ss_pred HHHHhcccccCCCceEEEEeccccCCccccccC-CCceeeehhh-hhhcCcchhhccCCccCCCCCcceEEEEE----cc
Confidence 1222246666665543 33334332111 01110 0110 123456899999863 32 2344 36
Q ss_pred ceEeccccccCCceEEeecCCCCCc----eEEEcCCC-ccc
Q 038708 275 LSFHVTCGLSEDLCIEYREGKKGGA----VVAGFCKD-HTE 310 (331)
Q Consensus 275 ~~fHv~CA~~~g~~~~~~~~~~~~~----~~~~~C~~-H~~ 310 (331)
+.||+.|-.-..+-+....+.++.. .-.+||+. |..
T Consensus 421 r~fHv~CY~CEDCg~~LS~e~e~qgCyPld~HllCk~Ch~~ 461 (468)
T KOG1701|consen 421 RDFHVNCYKCEDCGLLLSSEEEGQGCYPLDGHLLCKTCHLK 461 (468)
T ss_pred ccccccceehhhcCccccccCCCCcceeccCceeechhhhh
Confidence 8999999988877666653332221 12578887 544
No 69
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=47.21 E-value=12 Score=33.60 Aligned_cols=36 Identities=6% Similarity=-0.183 Sum_probs=24.8
Q ss_pred ccccccccccchhhhhh----------------hcCCCCCCCCCCCcccccc
Q 038708 38 SDESTAKNLCLPAKKRK----------------YCFYPPPLPSSDSPETRTV 73 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~----------------~~~cPlc~~~f~~~~~~~~ 73 (331)
.+.+.....||..|... ..+||.|+..+....+..+
T Consensus 35 ~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 35 LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 35566668899999542 3589999999854444443
No 70
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=47.15 E-value=6.4 Score=30.12 Aligned_cols=29 Identities=7% Similarity=-0.048 Sum_probs=26.5
Q ss_pred cccccccccccchhhhhhhcCCCCCCCCC
Q 038708 37 ESDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 37 ~~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...++-+.+.||..|-.-.+.|||+++.|
T Consensus 52 G~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred EecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 36788888999999999999999999998
No 71
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=46.78 E-value=12 Score=38.04 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=36.2
Q ss_pred cccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 142 AVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 142 ~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
.+|+..+. .++.|+.|+.|+.+-|.+|+|...... .....|..|....
T Consensus 89 c~c~~~~~-~~g~~i~c~~c~~Wqh~~C~g~~~~~~--p~~y~c~~c~~~~ 136 (508)
T KOG1844|consen 89 CDCGLEDD-MEGLMIQCDWCGRWQHKICCGSFKSTK--PDKYVCEICTPRN 136 (508)
T ss_pred cccccccC-CCceeeCCcccCcccCceeeeecCCCC--chhceeeeecccc
Confidence 35666542 179999999999999999999864322 3678898888773
No 72
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=46.35 E-value=15 Score=38.30 Aligned_cols=49 Identities=24% Similarity=0.688 Sum_probs=41.2
Q ss_pred cccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
.+.|.+|..+ +.++.|+.|+.++|..|-++++..+++.+.|.|..|...
T Consensus 47 ~ts~~~~~~~-----gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 47 ATSCGICKSG-----GNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhhcchhhhc-----CCccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 4679999976 668999999999999999998755566678999999885
No 73
>PHA02862 5L protein; Provisional
Probab=45.98 E-value=6.7 Score=33.43 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=31.7
Q ss_pred ccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
..|.||..++.++ ..-=.|.|-...+|+.|+.-=+ -+.+.-.|+.|...
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WI---n~S~k~~CeLCkte 51 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWI---NYSKKKECNLCKTK 51 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHH---hcCCCcCccCCCCe
Confidence 5799999975433 3444578889999999996321 12234455555555
No 74
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=45.86 E-value=17 Score=29.62 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=37.0
Q ss_pred ccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 137 DGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 137 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
+...|.+|+..-+--.+.-..|..|...|=..|-.. .-....|+|..|....
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~----~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY----SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE----TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc----CCCCCCEEChhhHHHH
Confidence 556899998754333455588999999999998763 2345789999998763
No 75
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=44.94 E-value=14 Score=28.14 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=27.7
Q ss_pred cccccccccCCCCCCcccc---ccccceeeccccCCee
Q 038708 196 RAFSCCLCPVGGGAMKPTK---DGLWAHVVCAVLVPEV 230 (331)
Q Consensus 196 ~~~~C~lC~~~gGalk~t~---~~~wvH~~Cal~~pe~ 230 (331)
....|.+|...+||...-. ...+.|+.||+...-+
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~~~~~ 72 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHPGCSRSFHVPCARKAGCF 72 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHccCCeE
Confidence 5678999999977775543 5789999999987643
No 76
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=44.24 E-value=23 Score=24.15 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=24.3
Q ss_pred ccccccCCCC----CCeeEeCCCCCCceEeccccccCC
Q 038708 253 KRCYICKSKR----GCSVECSEPKCCLSFHVTCGLSED 286 (331)
Q Consensus 253 ~~C~iC~~~~----G~~i~C~~~~C~~~fHv~CA~~~g 286 (331)
..|.+|+... +.-+.|.. |...+|-.|+....
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~~--C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCSW--CGLVCHKKCLSKVP 47 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEETT--TT-EEETTGGCTSS
T ss_pred CCCcccCcccCCCCCCeEEECC--CCChHhhhhhhhcC
Confidence 5799999976 45689986 99999999986653
No 77
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=43.63 E-value=16 Score=40.57 Aligned_cols=53 Identities=30% Similarity=0.663 Sum_probs=43.8
Q ss_pred ccccccccccc--cCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccc
Q 038708 137 DGILCAVCQST--DGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 137 ~~~~C~vC~~~--~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~ 193 (331)
...+|.||++. -..+++..+-|.-|.-.+-..||. .+.-+|.=.|++|.....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye----ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE----YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhh----hhhhcCCccCCccCCchh
Confidence 45689999984 246778999999999999999995 567789999999987743
No 78
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.60 E-value=15 Score=35.80 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=34.2
Q ss_pred ccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
..|.||.+. +..++.+.. =-|.=.||..|..+=++. ..=+||-|+...
T Consensus 230 ~~CaIClEd-Y~~GdklRi-LPC~H~FH~~CIDpWL~~----~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLED-YEKGDKLRI-LPCSHKFHVNCIDPWLTQ----TRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecc-cccCCeeeE-ecCCCchhhccchhhHhh----cCccCCCCCCcC
Confidence 589999984 445555554 679999999999875422 123788888764
No 79
>PLN02195 cellulose synthase A
Probab=42.24 E-value=18 Score=39.93 Aligned_cols=51 Identities=25% Similarity=0.608 Sum_probs=42.8
Q ss_pred ccccccccc--cCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccc
Q 038708 139 ILCAVCQST--DGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 139 ~~C~vC~~~--~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~ 193 (331)
..|.||++. -..+++..+-|.-|+-.|-..||. .+..+|.=-||+|.....
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye----yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLE----YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhh----hhhhcCCccCCccCCccc
Confidence 489999983 245778999999999999999995 567789999999988753
No 80
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=42.01 E-value=20 Score=27.97 Aligned_cols=33 Identities=24% Similarity=0.598 Sum_probs=21.7
Q ss_pred cccccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.+...|.+|+..=+ +....---|+..||..|+.
T Consensus 76 ~~~~~C~vC~k~l~---~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLG---NSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCC---CceEEEeCCCeEEeccccc
Confidence 34567999998632 2233333556889999973
No 81
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=41.74 E-value=17 Score=21.70 Aligned_cols=21 Identities=14% Similarity=-0.045 Sum_probs=17.3
Q ss_pred cccchhhhhhhcCCCCCCCCC
Q 038708 45 NLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 45 ~~ci~~w~~~~~~cPlc~~~f 65 (331)
..|-..+......||+|+..|
T Consensus 4 P~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 4 PECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred CCCcCCchhhcCcCCCCCCCC
Confidence 356677788888999999998
No 82
>PF14304 CSTF_C: Transcription termination and cleavage factor C-terminal; PDB: 2J8P_A.
Probab=40.02 E-value=12 Score=25.63 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=14.4
Q ss_pred CcccccCCchhHHHHHHHHH
Q 038708 2 DTKFEALPPLKRFRLMQQQR 21 (331)
Q Consensus 2 ~~~~~~~~~~~~~~~~~q~~ 21 (331)
+.+|.+|||..|-..++=.+
T Consensus 19 ~eQI~~LPp~qR~~I~~Lr~ 38 (46)
T PF14304_consen 19 PEQINALPPDQRQQILQLRQ 38 (46)
T ss_dssp HHHHHTS-HHHHTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 35799999999988775433
No 83
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=38.78 E-value=28 Score=35.01 Aligned_cols=54 Identities=20% Similarity=0.475 Sum_probs=37.2
Q ss_pred ccccccccc-CCCCCCeEEccCCCcccccccccCCC--------CCC--CCCCcEeCcccccccc
Q 038708 140 LCAVCQSTD-GDSKDPIVFCDGCDLMVHATCYGNPL--------VKE--IPDGDWFCAQCLAAND 193 (331)
Q Consensus 140 ~C~vC~~~~-~~~~~~ll~Cd~C~~~~H~~C~g~p~--------~~~--ip~~~W~C~~C~~~~~ 193 (331)
.|.||...| ..++-.-+.||.|+-+.|+.|---.. ... ..++.++|..|-...+
T Consensus 130 ~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~se 194 (446)
T PF07227_consen 130 MCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSE 194 (446)
T ss_pred CccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhh
Confidence 477788765 34667788899999999999962211 011 1355799999987753
No 84
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=38.14 E-value=13 Score=25.59 Aligned_cols=32 Identities=31% Similarity=0.787 Sum_probs=18.6
Q ss_pred cccccccccCCCCCCeE-Ecc--CCCcccccccccC
Q 038708 140 LCAVCQSTDGDSKDPIV-FCD--GCDLMVHATCYGN 172 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~ll-~Cd--~C~~~~H~~C~g~ 172 (331)
+|.||...+. +++.++ -|. |--..||..|+..
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~ 35 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLER 35 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHH
Confidence 4889987322 333333 333 2236789999963
No 85
>COG1773 Rubredoxin [Energy production and conversion]
Probab=37.19 E-value=24 Score=25.10 Aligned_cols=17 Identities=29% Similarity=1.095 Sum_probs=13.3
Q ss_pred CCCCCCcEeCcccccccc
Q 038708 176 KEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 176 ~~ip~~~W~C~~C~~~~~ 193 (331)
+.+| .+|.||.|-..++
T Consensus 31 edlP-d~w~CP~Cg~~K~ 47 (55)
T COG1773 31 EDLP-DDWVCPECGVGKK 47 (55)
T ss_pred hhCC-CccCCCCCCCCHh
Confidence 5566 6799999988754
No 86
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=36.71 E-value=26 Score=37.17 Aligned_cols=48 Identities=27% Similarity=0.650 Sum_probs=30.7
Q ss_pred ccccccccccCCCCCCeEEccCCCccc-ccccccCCCCCCCCCCcEeCcccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMV-HATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~-H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
..|.-|+.. +.+...+|..|+... |..|-.- ...+|.+.-||+.|-..
T Consensus 2 ~~Cp~Cg~~---n~~~akFC~~CG~~l~~~~Cp~C--G~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFE---NPNNNRFCQKCGTSLTHKPCPQC--GTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCc---CCCCCccccccCCCCCCCcCCCC--CCCCCcccccccccCCc
Confidence 368888875 556778899997765 3445433 23456666666666555
No 87
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=36.13 E-value=16 Score=35.67 Aligned_cols=40 Identities=25% Similarity=0.518 Sum_probs=34.4
Q ss_pred CeEEccCCCccccccc--ccCCCCCCCCCCcEeCcccccccc
Q 038708 154 PIVFCDGCDLMVHATC--YGNPLVKEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 154 ~ll~Cd~C~~~~H~~C--~g~p~~~~ip~~~W~C~~C~~~~~ 193 (331)
.|..|+.|-.++|..| .|++..+..+...|+|+.|.....
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~ 115 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQD 115 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccchhhh
Confidence 7899999999999999 998865555667899999999864
No 88
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=35.78 E-value=19 Score=22.66 Aligned_cols=26 Identities=8% Similarity=-0.084 Sum_probs=20.7
Q ss_pred cccccccccchhhhhh-hcCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRK-YCFYPPPLPS 64 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~-~~~cPlc~~~ 64 (331)
..+.....|+..|.+. ..+||.|+..
T Consensus 18 C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 18 CGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4566678899999887 6789999865
No 89
>PLN02189 cellulose synthase
Probab=35.72 E-value=25 Score=39.08 Aligned_cols=53 Identities=30% Similarity=0.640 Sum_probs=43.7
Q ss_pred cccccccccccc--CCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccc
Q 038708 137 DGILCAVCQSTD--GDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 137 ~~~~C~vC~~~~--~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~ 193 (331)
....|.||++.- ..+++..+-|.-|+-.+-..||. .+.-+|.=.||+|.....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye----yer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE----YERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhh----hhhhcCCccCcccCCchh
Confidence 335899999852 35778999999999999999995 567789999999988753
No 90
>KOG1084 consensus Transcription factor TCF20 [Transcription]
Probab=35.62 E-value=7.4 Score=38.47 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=63.8
Q ss_pred cccccccccC----CCCCCccccccccceeeccccCCeeE----EeCC-CCCccccccCcc----ccccCccccccCCCC
Q 038708 196 RAFSCCLCPV----GGGAMKPTKDGLWAHVVCAVLVPEVF----FEDP-EGREGIDCSKVP----KTRREKRCYICKSKR 262 (331)
Q Consensus 196 ~~~~C~lC~~----~gGalk~t~~~~wvH~~Cal~~pe~~----f~~~-~~~~~v~~~~i~----~~~~~~~C~iC~~~~ 262 (331)
....|.+|.. -+-.+.......++|..|+++..... .... ..+..++++... .....+.|.+|...
T Consensus 122 ~~~~cg~~~~~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~c~~~- 200 (375)
T KOG1084|consen 122 KHLKCGLCRARVRKLGSQLYDEYPSFEARMGCILIQNSRNGPAPEARLLCFSKSFLIESHEKVEDKCSEALNCKLCHEP- 200 (375)
T ss_pred cccccccchhHHhhhcccccchhhhhhhccchhHHhhccCCCCcccccchhhhhhhHHhhhhhhhhcccccccccccCC-
Confidence 4556666661 11222333355688888888754321 1111 111222222222 23345688888887
Q ss_pred CCeeE----eC-CCCCCceEeccccccCCceEEeecCCCCCceEEEcCCCcccc
Q 038708 263 GCSVE----CS-EPKCCLSFHVTCGLSEDLCIEYREGKKGGAVVAGFCKDHTEI 311 (331)
Q Consensus 263 G~~i~----C~-~~~C~~~fHv~CA~~~g~~~~~~~~~~~~~~~~~~C~~H~~~ 311 (331)
|+.+. |+ ...|..++|..||+..+..+.- ...+.++..+|..|++.
T Consensus 201 ~a~ts~~~~~~~~~~c~~~~e~~~~l~~~~~~~d---~~~~~~~h~~c~~~~~~ 251 (375)
T KOG1084|consen 201 GAPTSQFDPCDIDDDCNRSREFFCALSPKATIPD---IGFELWYHRYCALWAPN 251 (375)
T ss_pred CCcccccCCcchhhhhhhhhhhhhhhcCCCcCCc---cchhHHHHHHHHhcCCc
Confidence 55554 55 4569999999999988765433 11235677889888874
No 91
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=34.58 E-value=12 Score=25.39 Aligned_cols=30 Identities=27% Similarity=0.815 Sum_probs=17.6
Q ss_pred ccccccccCCCCCCeE-Ec--cCCCccccccccc
Q 038708 141 CAVCQSTDGDSKDPIV-FC--DGCDLMVHATCYG 171 (331)
Q Consensus 141 C~vC~~~~~~~~~~ll-~C--d~C~~~~H~~C~g 171 (331)
|.||..++.+++ .|+ -| .|--..||..|+-
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~ 33 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLE 33 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHH
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHH
Confidence 678988764333 233 23 3344588999985
No 92
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=33.03 E-value=20 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.450 Sum_probs=26.2
Q ss_pred ccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
..|.+|+.......+.-|.|-.|+..++..=.|
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred EeccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 479999876556667788899999999865555
No 93
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.50 E-value=14 Score=34.38 Aligned_cols=58 Identities=26% Similarity=0.451 Sum_probs=39.5
Q ss_pred cccccccccccccccCCCCCCeE------EccCCCcccccccccCCCC-C--CCCCCcEeCcccccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIV------FCDGCDLMVHATCYGNPLV-K--EIPDGDWFCAQCLAAND 193 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll------~Cd~C~~~~H~~C~g~p~~-~--~ip~~~W~C~~C~~~~~ 193 (331)
..+.+..|-+|+.+|.+ |.+- .|.|-...||+.|+.-=.- . .-+...--|++|+.+..
T Consensus 16 ~~e~eR~CWiCF~TdeD--n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 16 NQELERCCWICFATDED--NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccccceeEEEEeccCcc--cchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 34555789999998743 4443 6899999999999963110 0 11334578999998853
No 94
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=32.15 E-value=17 Score=31.55 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=32.3
Q ss_pred cccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
..+..|.||..++.. ...-=.|.|-...+|..|+.-=+ ...+...|+.|....
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi---~~s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWI---NTSKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHH---hcCCCCcccccCCeE
Confidence 344689999986532 22233456667789999996422 123455666666553
No 95
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=30.32 E-value=12 Score=41.62 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=41.0
Q ss_pred cccccccccccCCCCCCeEEccC-CCccccc-ccccCCC-CCCCCCCcEeCcccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDG-CDLMVHA-TCYGNPL-VKEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~-C~~~~H~-~C~g~p~-~~~ip~~~W~C~~C~~~~~ 193 (331)
...|.||+.. +.+++|++ |..+||. .|++-.- ...++++.|+|+.|...+.
T Consensus 428 ~rrl~Ie~~d-----et~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM 481 (1414)
T KOG1473|consen 428 SRRLRIEGMD-----ETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQM 481 (1414)
T ss_pred eeeeEEecCC-----CcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhc
Confidence 3469999863 78999999 9999999 9998321 2458999999999998753
No 96
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=30.08 E-value=18 Score=28.12 Aligned_cols=28 Identities=7% Similarity=-0.151 Sum_probs=23.3
Q ss_pred ccccccccccchhhhhh---hcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRK---YCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~---~~~cPlc~~~f 65 (331)
+..+.+...||..|-+- ..+||+|++.|
T Consensus 51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred cCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 56777889999999775 46999999988
No 97
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=29.57 E-value=37 Score=21.83 Aligned_cols=23 Identities=39% Similarity=0.722 Sum_probs=13.7
Q ss_pred cccccccccCCCCCCeEEccCCC
Q 038708 140 LCAVCQSTDGDSKDPIVFCDGCD 162 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~ll~Cd~C~ 162 (331)
.|.+|+.......+-..+|+.|+
T Consensus 10 ~C~~C~~~~~~~~dG~~yC~~cG 32 (36)
T PF11781_consen 10 PCPVCGSRWFYSDDGFYYCDRCG 32 (36)
T ss_pred cCCCCCCeEeEccCCEEEhhhCc
Confidence 47788765444445556666654
No 98
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=29.16 E-value=53 Score=36.82 Aligned_cols=60 Identities=25% Similarity=0.352 Sum_probs=39.9
Q ss_pred cccceeeccc--cCCeeEEeCCCCCccccccCccccccCccccccCCCCCCeeEeCCCCCCceEeccccccCC
Q 038708 216 GLWAHVVCAV--LVPEVFFEDPEGREGIDCSKVPKTRREKRCYICKSKRGCSVECSEPKCCLSFHVTCGLSED 286 (331)
Q Consensus 216 ~~wvH~~Cal--~~pe~~f~~~~~~~~v~~~~i~~~~~~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~~g 286 (331)
+..||..|.- ++|+.....-. -+........|.+|-..+||..+=. =.+|-|+.||+-.+
T Consensus 243 nl~VHq~Cygi~~ipeg~WlCr~--------Cl~s~~~~v~c~~cp~~~gAFkqt~---dgrw~Hv~caiwip 304 (1051)
T KOG0955|consen 243 NLAVHQECYGIPFIPEGQWLCRR--------CLQSPQRPVRCLLCPSKGGAFKQTD---DGRWAHVVCAIWIP 304 (1051)
T ss_pred cchhhhhccCCCCCCCCcEeehh--------hccCcCcccceEeccCCCCcceecc---CCceeeeehhhccc
Confidence 6789999964 55554332221 1111122368999999999988755 48999999997654
No 99
>COG4315 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.85 E-value=31 Score=28.49 Aligned_cols=19 Identities=37% Similarity=0.693 Sum_probs=16.3
Q ss_pred hhhhcccceeeEeecccCC
Q 038708 313 KKQQQTGKYKIVARDDCKK 331 (331)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~ 331 (331)
...+.+|.|.|++|+|+++
T Consensus 85 ~~dka~Gdysii~RkDGt~ 103 (138)
T COG4315 85 DADKASGDYSIIARKDGTK 103 (138)
T ss_pred cccccCCCeeeEEecCchh
Confidence 4668899999999999964
No 100
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=28.76 E-value=22 Score=22.01 Aligned_cols=23 Identities=22% Similarity=0.638 Sum_probs=11.0
Q ss_pred cccccccccCCCCCCeEEccCCC
Q 038708 140 LCAVCQSTDGDSKDPIVFCDGCD 162 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~ll~Cd~C~ 162 (331)
.|..|+......++.++.|..|.
T Consensus 4 ~Cp~C~se~~y~D~~~~vCp~C~ 26 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGELLVCPECG 26 (30)
T ss_dssp --TTT-----EE-SSSEEETTTT
T ss_pred CCCCCCCcceeccCCEEeCCccc
Confidence 57888876555567777788774
No 101
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=28.44 E-value=52 Score=23.26 Aligned_cols=44 Identities=20% Similarity=0.530 Sum_probs=30.0
Q ss_pred ccccccccc---CCCCCCeEEccCCCcccccccccCCCCCCCCC--CcE
Q 038708 140 LCAVCQSTD---GDSKDPIVFCDGCDLMVHATCYGNPLVKEIPD--GDW 183 (331)
Q Consensus 140 ~C~vC~~~~---~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~--~~W 183 (331)
.|.+|+..- ....+.++-|..|+..+-..-.+|..+...|. .||
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p~~L~~ap~~~eDw 52 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDPLRLEAAPEEAEDW 52 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCCCEEEeCccccccc
Confidence 588888731 12337899999999999887777754444443 355
No 102
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.40 E-value=35 Score=35.98 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=12.7
Q ss_pred cCCchhHHHHHHHHHHHHHhhhhc
Q 038708 7 ALPPLKRFRLMQQQREEQEGGQQH 30 (331)
Q Consensus 7 ~~~~~~~~~~~~q~~~~~~~~~~~ 30 (331)
.||-|-.--.+|||+|+|+++|+-
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1179)
T KOG3648|consen 62 QLPQLLQSSQLQQQQQQQQQQQQL 85 (1179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555566665555544333
No 103
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=27.50 E-value=46 Score=32.86 Aligned_cols=20 Identities=15% Similarity=-0.004 Sum_probs=19.1
Q ss_pred cccchhhhhhhcCCCCCCCC
Q 038708 45 NLCLPAKKRKYCFYPPPLPS 64 (331)
Q Consensus 45 ~~ci~~w~~~~~~cPlc~~~ 64 (331)
+.|++.|-++.-.||+|+..
T Consensus 324 l~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 324 LHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred HHHHHHHHHhccCCCcccCc
Confidence 88999999999999999997
No 104
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=26.93 E-value=40 Score=23.94 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=18.0
Q ss_pred ccccchhh-hhhhcCCCCCCCCCC
Q 038708 44 KNLCLPAK-KRKYCFYPPPLPSSD 66 (331)
Q Consensus 44 ~~~ci~~w-~~~~~~cPlc~~~f~ 66 (331)
...|...| -.+.|-||+|.++|+
T Consensus 27 H~I~~~~f~~~rYngCPfC~~~~~ 50 (55)
T PF14447_consen 27 HLICDNCFPGERYNGCPFCGTPFE 50 (55)
T ss_pred ceeeccccChhhccCCCCCCCccc
Confidence 35666777 566799999999993
No 105
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=26.85 E-value=44 Score=21.80 Aligned_cols=16 Identities=31% Similarity=0.922 Sum_probs=9.3
Q ss_pred ccccCCCCCC-eeEeCC
Q 038708 255 CYICKSKRGC-SVECSE 270 (331)
Q Consensus 255 C~iC~~~~G~-~i~C~~ 270 (331)
|.+|++..+. .+.|.+
T Consensus 1 C~~C~~~~~l~~f~C~~ 17 (39)
T smart00154 1 CHFCRKKVGLTGFKCRH 17 (39)
T ss_pred CcccCCcccccCeECCc
Confidence 5566666555 566654
No 106
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=25.81 E-value=57 Score=28.62 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=19.7
Q ss_pred CCCCeEEccCCCcccccccccCC
Q 038708 151 SKDPIVFCDGCDLMVHATCYGNP 173 (331)
Q Consensus 151 ~~~~ll~Cd~C~~~~H~~C~g~p 173 (331)
.+|.|..|..|..++|..-|.++
T Consensus 120 ~~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 120 PDNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred hhheEEecCCccceeehhhCCCC
Confidence 45899999999999999999543
No 107
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=25.76 E-value=11 Score=27.71 Aligned_cols=21 Identities=29% Similarity=0.977 Sum_probs=18.8
Q ss_pred CCeEEccCCCcccccccccCC
Q 038708 153 DPIVFCDGCDLMVHATCYGNP 173 (331)
Q Consensus 153 ~~ll~Cd~C~~~~H~~C~g~p 173 (331)
.-|+.|.+|+..-|-.|.||.
T Consensus 41 kAMi~Cq~CGAFCHDDCIgps 61 (69)
T PF13922_consen 41 KAMIMCQGCGAFCHDDCIGPS 61 (69)
T ss_pred HHHHHHhhccchhccccccHH
Confidence 459999999999999999974
No 108
>PF13916 Phostensin_N: PP1-regulatory protein, Phostensin N-terminal
Probab=25.32 E-value=39 Score=25.72 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=17.9
Q ss_pred cccCCchhHHHHHHHHHHHHHhhhhc
Q 038708 5 FEALPPLKRFRLMQQQREEQEGGQQH 30 (331)
Q Consensus 5 ~~~~~~~~~~~~~~q~~~~~~~~~~~ 30 (331)
.++|+|+.--+.|+++.+++.+.+++
T Consensus 45 ~EsiGP~~eNpFirlE~eRrr~~~~~ 70 (82)
T PF13916_consen 45 AESIGPLHENPFIRLERERRRQQQQE 70 (82)
T ss_pred HHhcCccccChHHHHHHHHHHHHhhH
Confidence 46889988777777766666654444
No 109
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=24.20 E-value=73 Score=20.37 Aligned_cols=16 Identities=38% Similarity=0.792 Sum_probs=11.8
Q ss_pred CCCeeEeCCCCCCceEec
Q 038708 262 RGCSVECSEPKCCLSFHV 279 (331)
Q Consensus 262 ~G~~i~C~~~~C~~~fHv 279 (331)
.|..++|.. |...|++
T Consensus 22 ~~~~vrC~~--C~~~f~v 37 (37)
T PF13719_consen 22 GGRKVRCPK--CGHVFRV 37 (37)
T ss_pred CCcEEECCC--CCcEeeC
Confidence 467888865 8888764
No 110
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=23.65 E-value=52 Score=21.13 Aligned_cols=28 Identities=21% Similarity=0.539 Sum_probs=17.2
Q ss_pred EEccCCCcccccccccCCCCCCCCCCcEeCccccc
Q 038708 156 VFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLA 190 (331)
Q Consensus 156 l~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~ 190 (331)
..|..|+..||..= .-|..+..|+.|-.
T Consensus 2 r~C~~Cg~~Yh~~~-------~pP~~~~~Cd~cg~ 29 (36)
T PF05191_consen 2 RICPKCGRIYHIEF-------NPPKVEGVCDNCGG 29 (36)
T ss_dssp EEETTTTEEEETTT-------B--SSTTBCTTTTE
T ss_pred cCcCCCCCcccccc-------CCCCCCCccCCCCC
Confidence 36889999999432 22344567777654
No 111
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.18 E-value=27 Score=36.14 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=21.4
Q ss_pred cccccccchhhhhhhcCCCCCCCCC
Q 038708 41 STAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 41 ~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
+.+...|+..|.++.+.||.|+..+
T Consensus 316 Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 316 HIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cchHHHHHHHHHHHhCcCCcchhhh
Confidence 3445899999999999999999955
No 112
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.14 E-value=21 Score=24.80 Aligned_cols=16 Identities=19% Similarity=-0.089 Sum_probs=7.9
Q ss_pred hhhhhcCCCCCCCCCC
Q 038708 51 KKRKYCFYPPPLPSSD 66 (331)
Q Consensus 51 w~~~~~~cPlc~~~f~ 66 (331)
.+.....||+|++.|+
T Consensus 16 l~~~~~~CPlC~r~l~ 31 (54)
T PF04423_consen 16 LKEAKGCCPLCGRPLD 31 (54)
T ss_dssp HTT-SEE-TTT--EE-
T ss_pred HhcCCCcCCCCCCCCC
Confidence 3344458999999993
No 113
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=22.63 E-value=30 Score=22.05 Aligned_cols=7 Identities=29% Similarity=0.861 Sum_probs=4.0
Q ss_pred EeCcccc
Q 038708 183 WFCAQCL 189 (331)
Q Consensus 183 W~C~~C~ 189 (331)
+.|+.|-
T Consensus 23 ~vC~~Cg 29 (34)
T PF14803_consen 23 LVCPACG 29 (34)
T ss_dssp EEETTTT
T ss_pred eECCCCC
Confidence 5666553
No 114
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=22.35 E-value=58 Score=20.79 Aligned_cols=15 Identities=40% Similarity=0.875 Sum_probs=10.0
Q ss_pred CCCeeEeCCCCCCceEe
Q 038708 262 RGCSVECSEPKCCLSFH 278 (331)
Q Consensus 262 ~G~~i~C~~~~C~~~fH 278 (331)
.|..++|.. |...|+
T Consensus 22 ~g~~v~C~~--C~~~f~ 36 (36)
T PF13717_consen 22 KGRKVRCSK--CGHVFF 36 (36)
T ss_pred CCcEEECCC--CCCEeC
Confidence 466777765 776664
No 115
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=22.21 E-value=42 Score=22.99 Aligned_cols=17 Identities=35% Similarity=1.073 Sum_probs=10.1
Q ss_pred CCCCCCcEeCcccccccc
Q 038708 176 KEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 176 ~~ip~~~W~C~~C~~~~~ 193 (331)
..+| .+|.|+.|...++
T Consensus 29 ~~Lp-~~w~CP~C~a~K~ 45 (47)
T PF00301_consen 29 EDLP-DDWVCPVCGAPKS 45 (47)
T ss_dssp GGS--TT-B-TTTSSBGG
T ss_pred HHCC-CCCcCcCCCCccc
Confidence 4455 5699999988753
No 116
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=21.44 E-value=36 Score=22.94 Aligned_cols=23 Identities=9% Similarity=-0.102 Sum_probs=19.1
Q ss_pred cccccchhhhhhhcCCCCCCCCC
Q 038708 43 AKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 43 ~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
....|+..|.+....||+|+...
T Consensus 25 ~C~~C~~~~~~~~~~CP~Cr~~i 47 (50)
T PF13920_consen 25 FCEECAERLLKRKKKCPICRQPI 47 (50)
T ss_dssp EEHHHHHHHHHTTSBBTTTTBB-
T ss_pred HHHHHhHHhcccCCCCCcCChhh
Confidence 45788899999899999999875
No 117
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=21.37 E-value=77 Score=34.02 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=23.8
Q ss_pred ccccccCCCCCCeeEeCCCCCCceEeccccccCC
Q 038708 253 KRCYICKSKRGCSVECSEPKCCLSFHVTCGLSED 286 (331)
Q Consensus 253 ~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~~g 286 (331)
..|.+|-+.+|++-.=.. =..|.|++||+--.
T Consensus 324 ppCvLCPkkGGamK~~~s--gT~wAHvsCALwIP 355 (893)
T KOG0954|consen 324 PPCVLCPKKGGAMKPTKS--GTKWAHVSCALWIP 355 (893)
T ss_pred CCeeeccccCCcccccCC--CCeeeEeeeeeccc
Confidence 479999999888754333 23999999996543
No 118
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.71 E-value=64 Score=19.79 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=14.4
Q ss_pred cccccccccc-CCCCCCeEEccCCCcc
Q 038708 139 ILCAVCQSTD-GDSKDPIVFCDGCDLM 164 (331)
Q Consensus 139 ~~C~vC~~~~-~~~~~~ll~Cd~C~~~ 164 (331)
.+|..|+..- ....+..+.|..|+..
T Consensus 4 rfC~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 4 RFCGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp SB-TTT--BEEE-SSSS-EEESSSS-E
T ss_pred cccCcCCccccCCCCcCEeECCCCcCE
Confidence 5799999743 3455788889888754
No 119
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=20.58 E-value=32 Score=21.94 Aligned_cols=24 Identities=13% Similarity=-0.028 Sum_probs=18.2
Q ss_pred ccccccccccchhhhhhhcCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPP 61 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc 61 (331)
..-+.....||..|.+...+||.|
T Consensus 16 ~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 16 PCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp TTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCchhHHHHHHHHHCcCCCcCC
Confidence 345566689999998888899986
No 120
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=20.37 E-value=53 Score=29.17 Aligned_cols=34 Identities=32% Similarity=0.751 Sum_probs=25.9
Q ss_pred CCCCcEeCcccccccccccccccccccCCCCCCcc
Q 038708 178 IPDGDWFCAQCLAANDENRAFSCCLCPVGGGAMKP 212 (331)
Q Consensus 178 ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGalk~ 212 (331)
-++|.|-|..|.+.. ....+.|++|..+-|.-.+
T Consensus 20 ~Deg~WdCsvCTFrN-sAeAfkC~vCdvRKGTSTR 53 (228)
T KOG4477|consen 20 DDEGKWDCSVCTFRN-SAEAFKCFVCDVRKGTSTR 53 (228)
T ss_pred cccCceeeeeeeecc-hhhhhheeeeccccccccc
Confidence 456899999999873 3568899999987665433
Done!