Query 038708
Match_columns 331
No_of_seqs 254 out of 1581
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 03:30:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lq6_A Bromodomain-containing 99.5 1.8E-14 6.1E-19 111.4 3.5 66 245-310 10-83 (87)
2 2ku3_A Bromodomain-containing 99.4 1.5E-13 5.2E-18 102.1 2.4 56 134-192 12-67 (71)
3 1wev_A Riken cDNA 1110020M19; 99.4 1.3E-13 4.6E-18 106.7 1.9 57 136-192 14-73 (88)
4 2yt5_A Metal-response element- 99.4 2E-13 6.9E-18 100.0 2.5 57 135-192 3-62 (66)
5 2l43_A N-teminal domain from h 99.3 5.7E-13 1.9E-17 103.2 1.4 55 135-192 22-76 (88)
6 1mm2_A MI2-beta; PHD, zinc fin 99.3 1.3E-12 4.6E-17 94.2 3.2 53 134-192 5-57 (61)
7 1f62_A Transcription factor WS 99.3 1.4E-12 4.7E-17 90.7 2.9 49 140-191 2-50 (51)
8 2lri_C Autoimmune regulator; Z 99.3 2.5E-12 8.4E-17 94.2 3.5 52 135-192 9-60 (66)
9 2yql_A PHD finger protein 21A; 99.2 3.3E-12 1.1E-16 90.6 3.3 51 134-190 5-55 (56)
10 1xwh_A Autoimmune regulator; P 99.2 2.8E-12 9.5E-17 94.0 2.9 52 135-192 5-56 (66)
11 2e6r_A Jumonji/ARID domain-con 99.2 2.1E-12 7.3E-17 100.8 2.2 56 133-191 11-66 (92)
12 2l5u_A Chromodomain-helicase-D 99.2 4.6E-12 1.6E-16 91.4 3.4 52 134-191 7-58 (61)
13 1fp0_A KAP-1 corepressor; PHD 99.2 5.6E-12 1.9E-16 97.1 4.1 54 133-192 20-73 (88)
14 2puy_A PHD finger protein 21A; 99.2 5.3E-12 1.8E-16 90.7 2.9 50 136-191 3-52 (60)
15 2e6s_A E3 ubiquitin-protein li 99.2 1.2E-11 4.3E-16 93.2 4.2 48 140-190 28-76 (77)
16 3asl_A E3 ubiquitin-protein li 99.2 1.4E-11 4.6E-16 91.3 3.2 49 140-191 20-69 (70)
17 2ysm_A Myeloid/lymphoid or mix 99.1 8.2E-11 2.8E-15 94.8 7.4 52 135-189 4-55 (111)
18 4gne_A Histone-lysine N-methyl 99.1 5.2E-11 1.8E-15 95.2 5.7 78 133-218 10-96 (107)
19 3shb_A E3 ubiquitin-protein li 99.1 2.1E-11 7.2E-16 91.9 3.0 48 140-190 28-76 (77)
20 3u5n_A E3 ubiquitin-protein li 99.0 1.1E-10 3.6E-15 104.2 4.2 62 134-201 3-64 (207)
21 2k16_A Transcription initiatio 99.0 1E-10 3.6E-15 87.6 3.0 57 133-192 13-69 (75)
22 2kwj_A Zinc finger protein DPF 99.0 2.2E-10 7.5E-15 92.8 3.7 58 132-192 52-109 (114)
23 3o36_A Transcription intermedi 99.0 5E-10 1.7E-14 98.0 6.1 61 137-203 3-63 (184)
24 3v43_A Histone acetyltransfera 98.9 9.2E-10 3.2E-14 88.8 4.9 60 129-190 52-111 (112)
25 3ask_A E3 ubiquitin-protein li 98.9 5.2E-10 1.8E-14 100.3 3.5 50 139-191 175-225 (226)
26 2kwj_A Zinc finger protein DPF 98.9 1.1E-09 3.9E-14 88.6 3.7 51 139-189 2-59 (114)
27 3v43_A Histone acetyltransfera 98.8 7.3E-10 2.5E-14 89.4 2.0 52 138-189 5-62 (112)
28 2lv9_A Histone-lysine N-methyl 98.8 2.5E-09 8.7E-14 84.2 4.7 51 136-191 26-76 (98)
29 2ysm_A Myeloid/lymphoid or mix 98.8 1.8E-09 6.2E-14 86.9 3.2 54 136-192 52-105 (111)
30 2vnf_A ING 4, P29ING4, inhibit 98.8 1.6E-09 5.6E-14 77.6 2.1 50 135-191 7-59 (60)
31 1wen_A Inhibitor of growth fam 98.8 4.8E-09 1.6E-13 77.7 4.0 53 133-192 11-66 (71)
32 2ro1_A Transcription intermedi 98.7 2.7E-09 9.3E-14 93.8 2.8 48 139-192 3-50 (189)
33 3c6w_A P28ING5, inhibitor of g 98.7 3.4E-09 1.2E-13 75.7 2.2 50 135-191 6-58 (59)
34 2g6q_A Inhibitor of growth pro 98.7 4.4E-09 1.5E-13 75.9 2.3 51 134-191 7-60 (62)
35 2jmi_A Protein YNG1, ING1 homo 98.7 7.3E-09 2.5E-13 80.1 2.6 51 134-191 22-76 (90)
36 1weu_A Inhibitor of growth fam 98.6 1.8E-08 6.3E-13 78.0 3.5 52 134-192 32-86 (91)
37 3o70_A PHD finger protein 13; 98.4 1.5E-07 5.3E-12 69.0 3.5 54 133-191 14-67 (68)
38 1wee_A PHD finger family prote 98.3 4.1E-07 1.4E-11 67.4 3.6 57 133-192 11-67 (72)
39 2lbm_A Transcriptional regulat 98.3 8.9E-08 3E-12 80.0 -0.0 53 134-191 59-117 (142)
40 1x4i_A Inhibitor of growth pro 98.3 2.1E-07 7E-12 68.7 1.5 50 136-192 4-56 (70)
41 1we9_A PHD finger family prote 98.3 5.4E-07 1.8E-11 65.1 3.4 56 135-192 3-59 (64)
42 2rsd_A E3 SUMO-protein ligase 98.2 7.6E-07 2.6E-11 65.2 2.7 55 135-192 7-66 (68)
43 3ql9_A Transcriptional regulat 98.1 3.7E-07 1.3E-11 75.0 -0.5 55 133-192 52-112 (129)
44 1wew_A DNA-binding family prot 98.1 1.7E-06 5.7E-11 65.1 2.9 54 135-192 13-73 (78)
45 1wem_A Death associated transc 98.0 8.7E-07 3E-11 66.2 0.4 54 136-192 14-71 (76)
46 2vpb_A Hpygo1, pygopus homolog 98.0 1.2E-06 4.1E-11 63.6 1.0 54 135-189 5-64 (65)
47 1wep_A PHF8; structural genomi 97.9 4.2E-06 1.4E-10 63.0 2.3 55 136-192 10-64 (79)
48 3o7a_A PHD finger protein 13 v 97.9 4.9E-06 1.7E-10 57.6 2.4 44 143-190 8-51 (52)
49 2ri7_A Nucleosome-remodeling f 97.8 2.2E-06 7.4E-11 73.9 -0.0 56 135-192 5-60 (174)
50 2kgg_A Histone demethylase jar 97.8 4.5E-06 1.5E-10 57.8 0.5 48 140-189 4-52 (52)
51 2xb1_A Pygopus homolog 2, B-ce 97.8 1E-05 3.4E-10 64.3 2.5 53 139-192 4-62 (105)
52 3kqi_A GRC5, PHD finger protei 97.7 9.8E-06 3.4E-10 60.3 1.5 51 139-192 11-62 (75)
53 3lqh_A Histone-lysine N-methyl 96.8 0.00025 8.4E-09 61.7 0.8 54 139-192 3-64 (183)
54 3kv5_D JMJC domain-containing 96.5 0.00044 1.5E-08 68.8 0.5 54 136-192 35-89 (488)
55 1wil_A KIAA1045 protein; ring 96.5 0.00049 1.7E-08 51.7 0.5 54 135-191 12-76 (89)
56 3pur_A Lysine-specific demethy 96.5 0.00095 3.2E-08 66.5 2.5 41 151-191 54-94 (528)
57 4bbq_A Lysine-specific demethy 95.9 0.0035 1.2E-07 50.1 2.5 40 151-191 71-114 (117)
58 3kv4_A PHD finger protein 8; e 95.4 0.0019 6.6E-08 63.4 -1.1 51 140-192 6-57 (447)
59 1we9_A PHD finger family prote 94.3 0.032 1.1E-06 39.5 3.3 31 252-284 6-39 (64)
60 1wew_A DNA-binding family prot 94.2 0.034 1.2E-06 41.2 3.5 32 251-283 15-48 (78)
61 2rsd_A E3 SUMO-protein ligase 94.0 0.03 1E-06 40.3 2.8 29 253-282 11-41 (68)
62 1wep_A PHF8; structural genomi 93.5 0.043 1.5E-06 40.7 2.8 29 252-283 12-43 (79)
63 4bbq_A Lysine-specific demethy 93.5 0.051 1.7E-06 43.1 3.4 77 139-232 8-98 (117)
64 2yql_A PHD finger protein 21A; 92.8 0.08 2.7E-06 36.5 3.2 30 252-284 9-38 (56)
65 1wee_A PHD finger family prote 92.8 0.062 2.1E-06 39.1 2.7 31 251-284 15-48 (72)
66 2puy_A PHD finger protein 21A; 92.7 0.083 2.8E-06 37.0 3.2 30 252-284 5-34 (60)
67 3o70_A PHD finger protein 13; 92.6 0.085 2.9E-06 38.1 3.2 30 253-285 20-51 (68)
68 1xwh_A Autoimmune regulator; P 92.2 0.1 3.5E-06 37.2 3.2 30 252-284 8-37 (66)
69 1wem_A Death associated transc 92.2 0.069 2.4E-06 39.2 2.3 29 252-283 16-46 (76)
70 1wen_A Inhibitor of growth fam 92.0 0.14 4.9E-06 37.2 3.9 31 252-283 16-48 (71)
71 2kgg_A Histone demethylase jar 91.9 0.12 3.9E-06 35.2 3.1 29 254-283 4-35 (52)
72 2jmi_A Protein YNG1, ING1 homo 91.7 0.11 3.9E-06 39.6 3.1 31 252-283 26-58 (90)
73 2lv9_A Histone-lysine N-methyl 91.2 0.13 4.5E-06 39.7 3.1 29 253-284 29-59 (98)
74 2l5u_A Chromodomain-helicase-D 91.1 0.13 4.4E-06 36.2 2.7 30 252-284 11-40 (61)
75 3c6w_A P28ING5, inhibitor of g 91.1 0.1 3.6E-06 36.5 2.2 30 253-283 10-41 (59)
76 2g6q_A Inhibitor of growth pro 91.1 0.1 3.4E-06 37.0 2.1 31 253-284 12-44 (62)
77 2k16_A Transcription initiatio 91.0 0.085 2.9E-06 38.5 1.7 30 253-284 19-50 (75)
78 1mm2_A MI2-beta; PHD, zinc fin 90.9 0.13 4.5E-06 36.1 2.5 31 251-284 8-38 (61)
79 2lri_C Autoimmune regulator; Z 90.6 0.1 3.5E-06 37.4 1.8 28 253-283 13-40 (66)
80 3o7a_A PHD finger protein 13 v 90.6 0.19 6.6E-06 34.0 3.1 28 255-284 6-35 (52)
81 1weu_A Inhibitor of growth fam 90.5 0.15 5.1E-06 39.0 2.7 31 252-283 36-68 (91)
82 2vnf_A ING 4, P29ING4, inhibit 90.3 0.11 3.8E-06 36.4 1.7 30 253-283 11-42 (60)
83 2xb1_A Pygopus homolog 2, B-ce 90.1 0.17 5.8E-06 39.6 2.8 29 253-282 4-35 (105)
84 1fp0_A KAP-1 corepressor; PHD 88.6 0.4 1.4E-05 36.3 3.8 31 251-284 24-54 (88)
85 1f62_A Transcription factor WS 88.4 0.19 6.4E-06 33.7 1.7 29 254-284 2-32 (51)
86 4gne_A Histone-lysine N-methyl 88.0 0.34 1.2E-05 38.1 3.2 31 252-283 15-45 (107)
87 2ri7_A Nucleosome-remodeling f 87.9 0.13 4.5E-06 43.6 0.7 28 252-282 8-38 (174)
88 2yt5_A Metal-response element- 86.6 0.48 1.6E-05 33.4 3.0 31 252-284 6-40 (66)
89 2e6s_A E3 ubiquitin-protein li 86.5 0.48 1.7E-05 34.9 3.1 28 254-283 28-57 (77)
90 3rsn_A SET1/ASH2 histone methy 86.4 0.52 1.8E-05 40.3 3.6 30 144-174 10-39 (177)
91 3asl_A E3 ubiquitin-protein li 86.3 0.35 1.2E-05 34.9 2.2 28 254-283 20-49 (70)
92 2vpb_A Hpygo1, pygopus homolog 86.0 0.29 1E-05 34.9 1.6 29 253-282 9-40 (65)
93 2ect_A Ring finger protein 126 85.7 0.68 2.3E-05 33.3 3.6 27 39-65 36-62 (78)
94 2ku7_A MLL1 PHD3-CYP33 RRM chi 85.5 0.12 4.1E-06 41.3 -0.8 39 154-192 1-45 (140)
95 1wev_A Riken cDNA 1110020M19; 84.2 0.75 2.6E-05 34.7 3.3 31 252-284 16-50 (88)
96 2ku3_A Bromodomain-containing 83.3 0.73 2.5E-05 33.4 2.8 32 252-285 16-51 (71)
97 3lqh_A Histone-lysine N-methyl 82.6 0.73 2.5E-05 39.7 2.9 29 253-283 3-37 (183)
98 1iym_A EL5; ring-H2 finger, ub 82.4 0.44 1.5E-05 31.7 1.2 27 39-65 27-53 (55)
99 3kqi_A GRC5, PHD finger protei 82.2 0.42 1.4E-05 34.9 1.1 27 255-283 12-41 (75)
100 1x4i_A Inhibitor of growth pro 81.6 0.73 2.5E-05 33.2 2.2 31 253-284 7-39 (70)
101 2ecl_A Ring-box protein 2; RNF 81.4 0.36 1.2E-05 35.5 0.5 28 38-65 47-74 (81)
102 1x4j_A Ring finger protein 38; 80.9 0.73 2.5E-05 32.9 2.0 27 39-65 44-70 (75)
103 3ng2_A RNF4, snurf, ring finge 80.3 0.6 2E-05 32.7 1.3 29 38-66 34-62 (71)
104 4ap4_A E3 ubiquitin ligase RNF 80.2 0.42 1.4E-05 37.7 0.5 28 38-65 31-58 (133)
105 3o36_A Transcription intermedi 79.6 1.1 3.8E-05 38.1 3.1 29 253-284 5-33 (184)
106 2e6r_A Jumonji/ARID domain-con 79.6 0.85 2.9E-05 34.7 2.1 29 253-283 17-47 (92)
107 2ecm_A Ring finger and CHY zin 78.9 0.75 2.6E-05 30.5 1.4 27 39-65 27-53 (55)
108 2xeu_A Ring finger protein 4; 77.7 0.73 2.5E-05 31.4 1.1 28 38-65 27-54 (64)
109 3dpl_R Ring-box protein 1; ubi 77.3 0.57 1.9E-05 36.6 0.5 28 38-65 72-99 (106)
110 2ep4_A Ring finger protein 24; 77.3 0.62 2.1E-05 33.1 0.6 27 39-65 36-62 (74)
111 4a0k_B E3 ubiquitin-protein li 76.0 0.54 1.9E-05 37.5 0.0 28 38-65 83-110 (117)
112 2kiz_A E3 ubiquitin-protein li 75.5 0.75 2.6E-05 32.2 0.6 27 39-65 35-61 (69)
113 2ea6_A Ring finger protein 4; 75.1 0.88 3E-05 31.5 0.9 28 38-65 39-66 (69)
114 3shb_A E3 ubiquitin-protein li 74.7 1.7 5.8E-05 32.0 2.4 29 254-284 28-58 (77)
115 3u5n_A E3 ubiquitin-protein li 74.7 1.2 4.2E-05 38.7 2.0 29 253-284 8-36 (207)
116 2l0b_A E3 ubiquitin-protein li 74.1 0.8 2.8E-05 34.2 0.5 27 39-65 61-87 (91)
117 3a1b_A DNA (cytosine-5)-methyl 73.7 0.98 3.4E-05 37.9 1.0 54 133-191 74-134 (159)
118 2l43_A N-teminal domain from h 73.7 0.94 3.2E-05 34.1 0.8 32 252-285 25-60 (88)
119 1chc_A Equine herpes virus-1 r 73.6 1.3 4.4E-05 30.8 1.5 27 39-65 24-50 (68)
120 2lbm_A Transcriptional regulat 72.8 2 6.7E-05 35.4 2.6 29 252-283 63-91 (142)
121 1weo_A Cellulose synthase, cat 72.6 0.39 1.3E-05 36.3 -1.5 52 138-193 16-69 (93)
122 1vyx_A ORF K3, K3RING; zinc-bi 72.5 0.24 8.4E-06 34.6 -2.5 51 136-191 4-56 (60)
123 2ro1_A Transcription intermedi 71.5 1.4 4.8E-05 37.9 1.5 29 253-284 3-31 (189)
124 1v87_A Deltex protein 2; ring- 70.1 1.1 3.6E-05 34.7 0.4 27 39-65 61-92 (114)
125 1iym_A EL5; ring-H2 finger, ub 67.6 3.5 0.00012 27.1 2.6 47 138-190 5-51 (55)
126 3ask_A E3 ubiquitin-protein li 67.5 2.7 9.2E-05 37.3 2.5 28 254-283 176-205 (226)
127 2djb_A Polycomb group ring fin 67.4 1.7 5.9E-05 30.6 1.0 28 38-65 33-60 (72)
128 2lk0_A RNA-binding protein 5; 66.9 2.7 9.2E-05 25.4 1.7 26 180-206 3-28 (32)
129 2d8s_A Cellular modulator of i 65.9 2.1 7.1E-05 31.5 1.2 25 41-65 42-68 (80)
130 1wil_A KIAA1045 protein; ring 65.5 1 3.5E-05 33.7 -0.6 35 253-289 16-51 (89)
131 2ct0_A Non-SMC element 1 homol 63.6 2 6.8E-05 31.3 0.7 28 38-65 33-62 (74)
132 3rsn_A SET1/ASH2 histone methy 62.9 3.9 0.00013 34.9 2.5 47 255-308 7-56 (177)
133 2k1p_A Zinc finger RAN-binding 62.3 5.6 0.00019 24.2 2.5 27 179-206 3-29 (33)
134 3ql9_A Transcriptional regulat 61.3 4.1 0.00014 33.0 2.3 30 252-284 57-86 (129)
135 2d8t_A Dactylidin, ring finger 61.1 1.6 5.3E-05 30.8 -0.3 27 39-65 33-59 (71)
136 2ct2_A Tripartite motif protei 60.8 3.6 0.00012 29.8 1.8 27 39-65 37-66 (88)
137 2ke4_A CDC42-interacting prote 59.8 5.4 0.00018 30.7 2.6 47 3-59 6-52 (98)
138 3k1l_B Fancl; UBC, ring, RWD, 58.8 3.3 0.00011 39.2 1.5 37 135-171 305-344 (381)
139 2yur_A Retinoblastoma-binding 58.5 3.7 0.00013 29.1 1.4 27 39-65 34-62 (74)
140 2csy_A Zinc finger protein 183 58.4 2.6 8.8E-05 30.4 0.5 27 39-65 33-59 (81)
141 2pv0_B DNA (cytosine-5)-methyl 56.2 2.2 7.7E-05 40.8 -0.1 54 134-192 89-149 (386)
142 4ayc_A E3 ubiquitin-protein li 55.5 2.9 9.9E-05 33.6 0.4 28 38-65 70-97 (138)
143 2ct0_A Non-SMC element 1 homol 55.5 4.4 0.00015 29.4 1.4 30 253-284 16-45 (74)
144 1ptq_A Protein kinase C delta 55.3 5.9 0.0002 25.8 1.9 34 138-171 11-44 (50)
145 2enn_A NPKC-theta, protein kin 54.8 7.8 0.00027 28.1 2.7 34 138-171 34-67 (77)
146 1g25_A CDK-activating kinase a 54.5 4.8 0.00016 27.5 1.4 28 38-65 25-53 (65)
147 1weq_A PHD finger protein 7; s 54.5 11 0.00038 28.1 3.5 37 152-192 43-80 (85)
148 3lrq_A E3 ubiquitin-protein li 54.3 3.8 0.00013 31.0 0.9 28 38-65 40-68 (100)
149 3kv5_D JMJC domain-containing 53.5 3.5 0.00012 40.8 0.7 27 253-282 38-67 (488)
150 2ysl_A Tripartite motif-contai 53.4 3.8 0.00013 28.6 0.8 27 39-65 38-67 (73)
151 2ecn_A Ring finger protein 141 52.9 0.92 3.2E-05 31.8 -2.7 27 39-65 32-58 (70)
152 3kv4_A PHD finger protein 8; e 52.5 3.4 0.00012 40.4 0.5 27 254-282 6-35 (447)
153 2enz_A NPKC-theta, protein kin 51.7 9.8 0.00034 26.4 2.7 34 138-171 23-56 (65)
154 2yuu_A NPKC-delta, protein kin 51.3 10 0.00035 27.8 2.8 34 138-171 28-61 (83)
155 2d8s_A Cellular modulator of i 51.2 9.3 0.00032 27.9 2.6 36 136-172 13-51 (80)
156 1v5n_A PDI-like hypothetical p 51.1 5.9 0.0002 29.7 1.5 32 139-173 48-79 (89)
157 1faq_A RAF-1; transferase, ser 50.5 8.3 0.00028 25.3 2.1 30 138-171 14-43 (52)
158 2d8v_A Zinc finger FYVE domain 50.2 5.2 0.00018 28.4 1.0 11 181-191 27-37 (67)
159 6rxn_A Rubredoxin; electron tr 49.9 12 0.00042 24.5 2.7 17 176-193 25-41 (46)
160 2ecv_A Tripartite motif-contai 49.8 8.7 0.0003 27.3 2.3 27 39-65 37-69 (85)
161 2y43_A E3 ubiquitin-protein li 49.6 4.2 0.00014 30.4 0.5 28 38-65 40-67 (99)
162 2ecy_A TNF receptor-associated 49.6 6.5 0.00022 26.9 1.5 27 39-65 33-60 (66)
163 4ap4_A E3 ubiquitin ligase RNF 48.3 4.8 0.00016 31.3 0.7 28 38-65 96-123 (133)
164 3uej_A NPKC-delta, protein kin 47.8 8.4 0.00029 26.8 1.8 34 138-171 20-53 (65)
165 2ecw_A Tripartite motif-contai 47.3 11 0.00039 26.6 2.6 27 39-65 37-69 (85)
166 2eli_A Protein kinase C alpha 45.1 15 0.00052 27.0 2.9 34 138-171 28-61 (85)
167 1y8f_A UNC-13 homolog A, MUNC1 44.0 11 0.00037 26.3 1.9 34 138-171 24-57 (66)
168 1t1h_A Gspef-atpub14, armadill 43.6 7.1 0.00024 27.6 0.9 27 39-65 26-53 (78)
169 3iot_A Maltose-binding protein 43.3 4.6 0.00016 38.5 -0.2 15 5-19 368-382 (449)
170 2ckl_A Polycomb group ring fin 42.2 6 0.0002 30.1 0.3 28 38-65 33-60 (108)
171 2d9g_A YY1-associated factor 2 40.6 23 0.00078 23.9 3.0 29 178-207 7-35 (53)
172 2zet_C Melanophilin; complex, 40.4 13 0.00045 30.8 2.1 52 137-192 67-118 (153)
173 2egp_A Tripartite motif-contai 40.0 6.9 0.00024 27.6 0.3 27 39-65 30-63 (79)
174 2ecl_A Ring-box protein 2; RNF 39.9 12 0.00042 26.9 1.7 48 139-191 16-73 (81)
175 1v5n_A PDI-like hypothetical p 39.7 9.4 0.00032 28.6 1.1 31 253-285 48-79 (89)
176 3fl2_A E3 ubiquitin-protein li 38.7 8.3 0.00028 30.1 0.6 27 39-65 70-97 (124)
177 1zbd_B Rabphilin-3A; G protein 38.3 25 0.00086 28.3 3.5 55 137-192 54-108 (134)
178 2fnf_X Putative RAS effector N 38.1 19 0.00064 25.7 2.4 32 137-171 34-65 (72)
179 1nj3_A NPL4; NZF domain, rubre 36.5 23 0.00079 20.7 2.3 25 181-206 5-29 (31)
180 1jm7_A BRCA1, breast cancer ty 36.3 16 0.00053 27.6 1.9 28 38-65 38-68 (112)
181 3ztg_A E3 ubiquitin-protein li 36.2 11 0.00037 27.6 0.9 27 39-65 32-60 (92)
182 1r79_A Diacylglycerol kinase, 35.8 16 0.00055 27.1 1.8 33 139-171 39-72 (84)
183 2kiz_A E3 ubiquitin-protein li 35.6 18 0.0006 24.7 1.9 36 135-172 11-46 (69)
184 4b6d_A RAC GTPase-activating p 35.2 18 0.00061 25.1 1.8 33 138-171 19-51 (61)
185 3nw0_A Non-structural maintena 34.7 14 0.00048 32.8 1.5 32 137-172 179-210 (238)
186 1n0z_A ZNF265; zinc finger, RN 34.7 20 0.00068 23.3 1.9 28 178-206 10-39 (45)
187 3hct_A TNF receptor-associated 34.6 11 0.00036 29.2 0.7 27 39-65 36-63 (118)
188 1e4u_A Transcriptional repress 33.2 11 0.00037 27.3 0.5 52 136-192 9-60 (78)
189 3nw0_A Non-structural maintena 32.8 15 0.00052 32.5 1.5 31 252-284 180-210 (238)
190 4b8c_D Glucose-repressible alc 32.8 11 0.00039 38.6 0.7 13 10-22 66-78 (727)
191 1jm7_B BARD1, BRCA1-associated 32.4 19 0.00066 27.6 1.9 26 38-65 40-65 (117)
192 3a9j_C Mitogen-activated prote 32.2 31 0.0011 20.6 2.4 27 179-206 5-31 (34)
193 2ckl_B Ubiquitin ligase protei 31.8 12 0.00043 30.6 0.7 28 38-65 72-100 (165)
194 2ku7_A MLL1 PHD3-CYP33 RRM chi 31.6 7.1 0.00024 30.6 -0.9 17 264-282 1-17 (140)
195 2j8p_A Cleavage stimulation fa 31.4 13 0.00046 24.8 0.6 17 3-19 22-38 (49)
196 1e8j_A Rubredoxin; iron-sulfur 31.4 29 0.00098 23.3 2.3 17 176-193 31-47 (52)
197 2vje_A E3 ubiquitin-protein li 31.4 18 0.00061 24.8 1.3 22 44-65 34-55 (64)
198 2db6_A SH3 and cysteine rich d 31.0 7.3 0.00025 28.0 -0.8 34 138-171 28-61 (74)
199 1rmd_A RAG1; V(D)J recombinati 30.6 13 0.00046 28.4 0.6 27 39-65 41-68 (116)
200 1kbe_A Kinase suppressor of RA 30.0 39 0.0013 22.2 2.8 31 253-285 15-45 (49)
201 3l11_A E3 ubiquitin-protein li 29.8 20 0.00069 27.3 1.5 45 138-191 15-59 (115)
202 1x4j_A Ring finger protein 38; 29.5 23 0.0008 24.6 1.7 35 136-172 21-55 (75)
203 1wg2_A Zinc finger (AN1-like) 29.5 50 0.0017 23.2 3.3 18 251-268 14-32 (64)
204 2kn9_A Rubredoxin; metalloprot 29.1 51 0.0017 24.3 3.5 17 176-193 55-71 (81)
205 2lq6_A Bromodomain-containing 28.5 24 0.00083 26.2 1.7 30 139-171 18-49 (87)
206 2ecj_A Tripartite motif-contai 28.5 11 0.00039 24.6 -0.1 23 39-61 33-58 (58)
207 3gj5_B Nuclear pore complex pr 28.1 29 0.001 21.2 1.7 26 179-205 4-29 (34)
208 1rfh_A RAS association (ralgds 28.0 18 0.0006 24.7 0.8 31 138-171 22-52 (59)
209 2yvc_D Neprilysin; protein-pep 26.8 21 0.00071 20.0 0.8 15 1-15 7-22 (26)
210 1bor_A Transcription factor PM 26.7 25 0.00084 23.2 1.3 12 136-147 4-15 (56)
211 1z6u_A NP95-like ring finger p 26.7 17 0.00059 29.6 0.6 26 40-65 97-123 (150)
212 3gj8_B Nuclear pore complex pr 26.0 31 0.0011 25.8 1.9 27 178-205 61-87 (92)
213 2vje_B MDM4 protein; proto-onc 25.5 23 0.00079 24.1 1.0 22 44-65 33-54 (63)
214 1yk4_A Rubredoxin, RD; electro 25.3 54 0.0019 21.9 2.8 17 176-193 30-46 (52)
215 2ysj_A Tripartite motif-contai 25.1 17 0.00058 24.4 0.2 23 39-61 38-63 (63)
216 1wfh_A Zinc finger (AN1-like) 25.1 65 0.0022 22.6 3.3 19 250-268 13-32 (64)
217 2ebr_A Nuclear pore complex pr 25.0 64 0.0022 21.2 3.1 29 177-206 6-34 (47)
218 3a1b_A DNA (cytosine-5)-methyl 24.9 39 0.0013 28.1 2.5 32 252-284 79-110 (159)
219 1dx8_A Rubredoxin; electron tr 24.9 35 0.0012 24.3 1.9 17 176-193 35-51 (70)
220 3pfq_A PKC-B, PKC-beta, protei 24.8 35 0.0012 34.5 2.7 95 139-284 49-147 (674)
221 2vrw_B P95VAV, VAV1, proto-onc 24.0 47 0.0016 31.1 3.3 36 136-171 355-390 (406)
222 3gj3_B Nuclear pore complex pr 23.7 39 0.0013 20.5 1.7 26 179-205 4-29 (33)
223 1pft_A TFIIB, PFTFIIBN; N-term 23.4 46 0.0016 21.5 2.2 27 139-165 6-34 (50)
224 2ebq_A Nuclear pore complex pr 23.0 52 0.0018 21.6 2.3 30 176-206 5-34 (47)
225 2v3b_B Rubredoxin 2, rubredoxi 22.3 62 0.0021 21.8 2.7 17 176-193 31-47 (55)
226 2co8_A NEDD9 interacting prote 22.3 26 0.0009 25.1 0.8 57 252-312 15-75 (82)
227 2row_A RHO-associated protein 22.2 32 0.0011 25.4 1.3 33 138-171 35-70 (84)
228 1s24_A Rubredoxin 2; electron 21.4 57 0.0019 24.3 2.5 17 176-193 63-79 (87)
229 4b8c_D Glucose-repressible alc 21.0 21 0.00071 36.6 0.0 10 46-55 144-153 (727)
230 3pur_A Lysine-specific demethy 20.3 48 0.0017 32.9 2.5 21 260-282 53-73 (528)
231 1wff_A Riken cDNA 2810002D23 p 20.1 95 0.0033 23.0 3.5 20 249-268 22-43 (85)
No 1
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=1.8e-14 Score=111.39 Aligned_cols=66 Identities=32% Similarity=0.720 Sum_probs=55.9
Q ss_pred CccccccCccccccCCC-CCCeeEeCCCCCCceEeccccccCCceEEeecCCC-------CCceEEEcCCCccc
Q 038708 245 KVPKTRREKRCYICKSK-RGCSVECSEPKCCLSFHVTCGLSEDLCIEYREGKK-------GGAVVAGFCKDHTE 310 (331)
Q Consensus 245 ~i~~~~~~~~C~iC~~~-~G~~i~C~~~~C~~~fHv~CA~~~g~~~~~~~~~~-------~~~~~~~~C~~H~~ 310 (331)
.||+.||+++|++|+.+ .|++|+|+..+|.++|||+||+.+|+.+++..... +...+.+||++|++
T Consensus 10 NIp~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsP 83 (87)
T 2lq6_A 10 NIPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTP 83 (87)
T ss_dssp CCCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSS
T ss_pred CCChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCC
Confidence 57889999999999987 49999999999999999999999999988753211 12357899999997
No 2
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-13 Score=102.12 Aligned_cols=56 Identities=39% Similarity=1.076 Sum_probs=48.8
Q ss_pred cccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
...++..|.||+.+++++++.||+||+|+.+||++||+++ .+|+|+|||+.|....
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~---~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---YIPEGQWLCRHCLQSR 67 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS---SCCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC---cCCCCCcCCccCcCcC
Confidence 3455678999999876788999999999999999999986 3899999999998764
No 3
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.36 E-value=1.3e-13 Score=106.75 Aligned_cols=57 Identities=26% Similarity=0.665 Sum_probs=49.2
Q ss_pred cccccccccccccCCCCCCeEEccCCCcccccccccCCCCC---CCCCCcEeCccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVK---EIPDGDWFCAQCLAAN 192 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~---~ip~~~W~C~~C~~~~ 192 (331)
+.+.+|.||+.++..+.+.||+||+|+.+||++||+||+.. .+|.|+|||+.|....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 35678999999876667999999999999999999999632 3899999999998874
No 4
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.35 E-value=2e-13 Score=100.00 Aligned_cols=57 Identities=28% Similarity=0.729 Sum_probs=49.1
Q ss_pred ccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCC--C-CCCcEeCccccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKE--I-PDGDWFCAQCLAAN 192 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~--i-p~~~W~C~~C~~~~ 192 (331)
+.++..|.||+.++.++.+.||+||+|+.+||++||+||+ .+ + |.++|||+.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l-~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHI-DSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCC-CHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcc-cccccCCCCCEECCCCcCcc
Confidence 4556789999998666789999999999999999999986 44 4 89999999998764
No 5
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.28 E-value=5.7e-13 Score=103.19 Aligned_cols=55 Identities=40% Similarity=1.129 Sum_probs=48.1
Q ss_pred ccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
.+++..|.||+.+++.+++.||+||+|+.+||++||+|++ +|+|+|||+.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS---CCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc---cCCCceECccccCcc
Confidence 3456789999988666788999999999999999999863 899999999998874
No 6
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.28 E-value=1.3e-12 Score=94.22 Aligned_cols=53 Identities=32% Similarity=0.909 Sum_probs=46.0
Q ss_pred cccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
++.++..|.||+.+ +.||+||+|+.+||++|++||+ .++|.|+|||+.|....
T Consensus 5 ~d~~~~~C~vC~~~-----g~ll~Cd~C~~~fH~~Cl~ppl-~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 5 SDHHMEFCRVCKDG-----GELLCCDTCPSSYHIHCLNPPL-PEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCSSCTTTCCC-----SSCBCCSSSCCCBCSSSSSSCC-SSCCSSCCCCTTTTTTC
T ss_pred ccCCCCcCCCCCCC-----CCEEEcCCCCHHHcccccCCCc-CcCCCCccCChhhcCch
Confidence 34566789999964 6799999999999999999985 78999999999998763
No 7
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.27 E-value=1.4e-12 Score=90.69 Aligned_cols=49 Identities=37% Similarity=0.973 Sum_probs=43.6
Q ss_pred cccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 140 LCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
.|.||+.++ +++.||+||+|+.+||++|++|++ .++|.|+|||+.|...
T Consensus 2 ~C~vC~~~~--~~~~ll~Cd~C~~~~H~~Cl~p~l-~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKG--EDDKLILCDECNKAFHLFCLRPAL-YEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSS--CCSCCEECTTTCCEECHHHHCTTC-CSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCC--CCCCEEECCCCChhhCcccCCCCc-CCCCCCcEECcCcccc
Confidence 699999865 568999999999999999999885 7899999999999764
No 8
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.25 E-value=2.5e-12 Score=94.20 Aligned_cols=52 Identities=21% Similarity=0.425 Sum_probs=44.9
Q ss_pred ccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
......|.||+++ +.||+||+|+.+||++|+.|++ ..+|.++|||+.|....
T Consensus 9 ~~~~~~C~vC~~~-----~~ll~Cd~C~~~~H~~Cl~P~l-~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDG-----TDVLRCTHCAAAFHWRCHFPAG-TSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCC-----TTCEECSSSCCEECHHHHCTTT-CCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCC-----CeEEECCCCCCceecccCCCcc-CcCCCCCEECccccCCC
Confidence 4455679999864 5699999999999999999885 88999999999998764
No 9
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.3e-12 Score=90.58 Aligned_cols=51 Identities=33% Similarity=0.943 Sum_probs=44.6
Q ss_pred cccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLA 190 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~ 190 (331)
++.++..|.||+.+ +.||.||.|+.+||.+|++||+ ..+|.++|||+.|..
T Consensus 5 ~~~~~~~C~vC~~~-----g~ll~Cd~C~~~~H~~Cl~ppl-~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPL-KTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS-----SCCEECSSSSCEECSSSSSSCC-CSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC-----CeEEEcCCCCcceECccCCCCc-CCCCCCceEChhhhC
Confidence 34556789999975 6799999999999999999985 789999999999964
No 10
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.23 E-value=2.8e-12 Score=94.00 Aligned_cols=52 Identities=40% Similarity=1.007 Sum_probs=45.7
Q ss_pred ccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
+.++..|.||+.+ +.||+||+|+.+||++|++||+ ..+|.++|||+.|...+
T Consensus 5 ~~~~~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~ppl-~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 5 QKNEDECAVCRDG-----GELICCDGCPRAFHLACLSPPL-REIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CSCCCSBSSSSCC-----SSCEECSSCCCEECTTTSSSCC-SSCCSSCCCCHHHHHTC
T ss_pred CCCCCCCccCCCC-----CCEEEcCCCChhhcccccCCCc-CcCCCCCeECccccCcc
Confidence 3456789999975 5799999999999999999985 78999999999998874
No 11
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=2.1e-12 Score=100.76 Aligned_cols=56 Identities=43% Similarity=0.933 Sum_probs=48.7
Q ss_pred ccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
+...++..|.||+..+ +.+.||+||+|+.+||++|++||+ ..+|.++|||+.|...
T Consensus 11 ~~~~~~~~C~vC~~~~--~~~~ll~CD~C~~~~H~~Cl~Ppl-~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGD--EDDKLLFCDGCDDNYHIFCLLPPL-PEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSG--GGGGCEECTTTCCEECSSSSSSCC-SSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcC--CCCCEEEcCCCCchhccccCCCCc-ccCCCCCcCCccCcCc
Confidence 4455667899999875 458899999999999999999986 7899999999999875
No 12
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=4.6e-12 Score=91.36 Aligned_cols=52 Identities=33% Similarity=0.848 Sum_probs=45.5
Q ss_pred cccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
++..+..|.||+.+ +.||+||+|+.+||++|+++|+ .++|.++|||+.|...
T Consensus 7 ~~~~~~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~p~l-~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG-----GEIILCDTCPRAYHMVCLDPDM-EKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC-----SSEEECSSSSCEEEHHHHCTTC-CSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC-----CcEEECCCCChhhhhhccCCCC-CCCCCCceECcccccc
Confidence 34556789999974 6899999999999999999985 7899999999999865
No 13
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.22 E-value=5.6e-12 Score=97.06 Aligned_cols=54 Identities=28% Similarity=0.813 Sum_probs=47.1
Q ss_pred ccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
..+.++..|.||+.+ +.||+||+|+.+||++|+.||+ .++|.|+|+|+.|....
T Consensus 20 ~~d~n~~~C~vC~~~-----g~LL~CD~C~~~fH~~Cl~PpL-~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 20 TLDDSATICRVCQKP-----GDLVMCNQCEFCFHLDCHLPAL-QDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSSSCCSSSCSS-----SCCEECTTSSCEECTTSSSTTC-CCCCSSSCCCCSCCCCC
T ss_pred ccCCCCCcCcCcCCC-----CCEEECCCCCCceecccCCCCC-CCCcCCCcCCccccCCC
Confidence 445667799999975 5699999999999999998885 88999999999999763
No 14
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.20 E-value=5.3e-12 Score=90.73 Aligned_cols=50 Identities=34% Similarity=0.932 Sum_probs=44.4
Q ss_pred cccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
.++..|.||+.+ +.||.||+|+.+||.+|++||+ ..+|.|+|||+.|...
T Consensus 3 ~~~~~C~vC~~~-----g~ll~Cd~C~~~fH~~Cl~ppl-~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKS-----GQLLMCDTCSRVYHLDCLDPPL-KTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCC-----SSCEECSSSSCEECGGGSSSCC-SSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCC-----CcEEEcCCCCcCEECCcCCCCc-CCCCCCceEChhccCh
Confidence 345789999975 6799999999999999999985 7899999999999875
No 15
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=93.17 Aligned_cols=48 Identities=29% Similarity=0.921 Sum_probs=43.5
Q ss_pred cccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCC-cEeCccccc
Q 038708 140 LCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDG-DWFCAQCLA 190 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~-~W~C~~C~~ 190 (331)
.|.||+..+ +++.||+||+|+.+||++|++||+ ..+|.| +|||+.|..
T Consensus 28 ~C~vC~~~~--~~~~ll~CD~C~~~yH~~Cl~Ppl-~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKH--EPNMQLLCDECNVAYHIYCLNPPL-DKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCC--CSTTEEECSSSCCEEETTSSSSCC-SSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcC--CCCCEEEcCCCCccccccccCCCc-cCCCCCCCcCCcCccC
Confidence 799999865 668999999999999999999985 789999 999999975
No 16
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.15 E-value=1.4e-11 Score=91.34 Aligned_cols=49 Identities=31% Similarity=0.970 Sum_probs=43.1
Q ss_pred cccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCC-cEeCcccccc
Q 038708 140 LCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDG-DWFCAQCLAA 191 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~-~W~C~~C~~~ 191 (331)
.|.||+..+ +++.||+||+|+.+||++|++||+ .++|.| +|||+.|...
T Consensus 20 ~C~~C~~~~--~~~~ll~CD~C~~~yH~~Cl~Ppl-~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQ--DPDKQLMCDECDMAFHIYCLDPPL-SSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCS--CGGGEEECTTTCCEEEGGGSSSCC-SSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcC--CCCCEEEcCCCCCceecccCCCCc-CCCCCCCCcCCcCccCc
Confidence 577888764 568999999999999999999996 789999 9999999854
No 17
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.13 E-value=8.2e-11 Score=94.78 Aligned_cols=52 Identities=27% Similarity=0.676 Sum_probs=43.4
Q ss_pred ccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCL 189 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~ 189 (331)
..++..|.||+.+. +.+.||.|+.|+.+||.+|+++++ ..++.+.|+|+.|.
T Consensus 4 ~~~~~~C~~C~~~g--~~~~ll~C~~C~~~~H~~Cl~~~~-~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPG--DLLDQFFCTTCGQHYHGMCLDIAV-TPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCC--CTTTSEECSSSCCEECTTTTTCCC-CTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCC--CCcCCeECCCCCCCcChHHhCCcc-ccccccCccCCcCC
Confidence 34567899999864 446789999999999999999875 56778999999986
No 18
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.12 E-value=5.2e-11 Score=95.16 Aligned_cols=78 Identities=23% Similarity=0.486 Sum_probs=60.7
Q ss_pred ccccccccccccccccCCCCCCeEEcc--CCCcccccccccCCCCCCCCCCcEeCcccccccc-cccccccccccC----
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCD--GCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAND-ENRAFSCCLCPV---- 205 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~-~~~~~~C~lC~~---- 205 (331)
.+..++.+|.+|+++ +.||.|| +|+.+||.+|++ +..+|.|+|||+.|.-..= ....+.|.+|+.
T Consensus 10 ~~~~~~~~C~~C~~~-----G~ll~CD~~~Cp~~fH~~Cl~---L~~~P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~sfC~ 81 (107)
T 4gne_A 10 PKQMHEDYCFQCGDG-----GELVMCDKKDCPKAYHLLCLN---LTQPPYGKWECPWHQCDECSSAAVSFCEFCPHSFCK 81 (107)
T ss_dssp CCCSSCSSCTTTCCC-----SEEEECCSTTCCCEECTGGGT---CSSCCSSCCCCGGGBCTTTCSBCCEECSSSSCEECT
T ss_pred CcCCCCCCCCcCCCC-----CcEeEECCCCCCcccccccCc---CCcCCCCCEECCCCCCCcCCCCCCcCcCCCCcchhh
Confidence 345566789999954 6799999 899999999999 5789999999999975532 124588999985
Q ss_pred --CCCCCcccccccc
Q 038708 206 --GGGAMKPTKDGLW 218 (331)
Q Consensus 206 --~gGalk~t~~~~w 218 (331)
..|+|+.+....|
T Consensus 82 ~c~~g~l~~~~~~~~ 96 (107)
T 4gne_A 82 DHEKGALVPSALEGR 96 (107)
T ss_dssp TTCTTSCEECTTTTC
T ss_pred hccCCcceecCCCCc
Confidence 3477777666555
No 19
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.12 E-value=2.1e-11 Score=91.86 Aligned_cols=48 Identities=33% Similarity=1.006 Sum_probs=42.4
Q ss_pred cccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCc-EeCccccc
Q 038708 140 LCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGD-WFCAQCLA 190 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~-W~C~~C~~ 190 (331)
.|.||+..+ +++.||+||+|+.+||++|++||+ ..+|.|+ |||+.|++
T Consensus 28 ~C~vC~~~~--d~~~ll~CD~C~~~yH~~Cl~PpL-~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ--DPDKQLMCDECDMAFHIYCLDPPL-SSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS--CGGGEEECTTTCCEEETTTSSSCC-SSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC--CCcceeEeCCCCCccCcccCCCcc-cCCCCCCceECcCccc
Confidence 688888765 668999999999999999999996 7899999 99999975
No 20
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.03 E-value=1.1e-10 Score=104.23 Aligned_cols=62 Identities=29% Similarity=0.756 Sum_probs=50.0
Q ss_pred cccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccccccccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCC 201 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~ 201 (331)
++.++..|.||+.+ +.||+||+|+.+||.+|++||+ ..+|.|+|+|+.|...........|.
T Consensus 3 ~d~~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~l-~~~p~~~W~C~~C~~~~~~~~~~~c~ 64 (207)
T 3u5n_A 3 DDPNEDWCAVCQNG-----GDLLCCEKCPKVFHLTCHVPTL-LSFPSGDWICTFCRDIGKPEVEYDCD 64 (207)
T ss_dssp CCSSCSSBTTTCCC-----EEEEECSSSSCEECTTTSSSCC-SSCCSSCCCCTTTSCSSSCSSCCSCC
T ss_pred CCCCCCCCCCCCCC-----CceEEcCCCCCccCCccCCCCC-CCCCCCCEEeCceeCccccccccccc
Confidence 45566789999975 4599999999999999999885 78999999999999876433333343
No 21
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.02 E-value=1e-10 Score=87.61 Aligned_cols=57 Identities=28% Similarity=0.635 Sum_probs=47.3
Q ss_pred ccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
++..+..+|.+|+..+ +++.||.||+|+.+||.+|+|+++ ..++.++|||+.|....
T Consensus 13 ~~~~~~~~C~~C~~~~--~~~~mi~CD~C~~wfH~~Cv~~~~-~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 13 EWGNQIWICPGCNKPD--DGSPMIGCDDCDDWYHWPCVGIMA-APPEEMQWFCPKCANKI 69 (75)
T ss_dssp SSSCEEECBTTTTBCC--SSCCEEECSSSSSEEEHHHHTCSS-CCCSSSCCCCTTTHHHH
T ss_pred ccCCCCcCCCCCCCCC--CCCCEEEcCCCCcccccccCCCCc-cCCCCCCEEChhccCch
Confidence 3345667899999875 457899999999999999999885 56677999999998763
No 22
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.98 E-value=2.2e-10 Score=92.81 Aligned_cols=58 Identities=29% Similarity=0.742 Sum_probs=48.1
Q ss_pred cccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 132 EEEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 132 ~~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
.+.-.+-..|.||+..+ +++.||+||+|+.+||++|++||+ ..+|.|+|||+.|....
T Consensus 52 ~W~C~~C~~C~~C~~~~--~~~~ll~Cd~C~~~yH~~Cl~ppl-~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 52 KWQCIECKSCILCGTSE--NDDQLLFCDDCDRGYHMYCLNPPV-AEPPEGSWSCHLCWELL 109 (114)
T ss_dssp TCCCGGGCCCTTTTCCT--TTTTEEECSSSCCEEETTTSSSCC-SSCCSSCCCCHHHHHHH
T ss_pred ccCccccCccCcccccC--CCCceEEcCCCCccccccccCCCc-cCCCCCCeECccccchh
Confidence 34444445789998864 568999999999999999999985 88999999999998653
No 23
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.97 E-value=5e-10 Score=98.00 Aligned_cols=61 Identities=26% Similarity=0.721 Sum_probs=49.7
Q ss_pred ccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccccccccccccc
Q 038708 137 DGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCCLC 203 (331)
Q Consensus 137 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~lC 203 (331)
++..|.||+.+ +.||+||+|+.+||.+|++|++ ..+|.|+|+|+.|...........|.-.
T Consensus 3 ~~~~C~~C~~~-----g~ll~Cd~C~~~~H~~C~~p~l-~~~p~~~W~C~~C~~~~~~~~e~dc~~~ 63 (184)
T 3o36_A 3 NEDWCAVCQNG-----GELLCCEKCPKVFHLSCHVPTL-TNFPSGEWICTFCRDLSKPEVEYDCDAP 63 (184)
T ss_dssp SCSSCTTTCCC-----SSCEECSSSSCEECTTTSSSCC-SSCCSSCCCCTTTSCSSSCSSCCGGGCC
T ss_pred CCCccccCCCC-----CeeeecCCCCcccCccccCCCC-CCCCCCCEECccccCccccccccccccc
Confidence 44689999965 5699999999999999999885 7899999999999988654444455443
No 24
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.91 E-value=9.2e-10 Score=88.82 Aligned_cols=60 Identities=30% Similarity=0.765 Sum_probs=48.5
Q ss_pred hcccccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccc
Q 038708 129 QQEEEEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLA 190 (331)
Q Consensus 129 ~~~~~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~ 190 (331)
....+.-.+-..|.||+.. +.+++.||+||.|+.+||++|+.|++ .++|+|+|||+.|+.
T Consensus 52 ~~~~W~C~~C~~C~vC~~~-~~~~~~ll~Cd~C~~~yH~~Cl~p~l-~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 52 KALRWQCIECKTCSSCRDQ-GKNADNMLFCDSCDRGFHMECCDPPL-TRMPKGMWICQICRP 111 (112)
T ss_dssp HTSCCCCTTTCCBTTTCCC-CCTTCCCEECTTTCCEECGGGCSSCC-SSCCSSCCCCTTTSC
T ss_pred hccccccccCCccccccCc-CCCccceEEcCCCCCeeecccCCCCC-CCCCCCCeECCCCCC
Confidence 3444555555679999874 23567899999999999999999885 789999999999974
No 25
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.90 E-value=5.2e-10 Score=100.30 Aligned_cols=50 Identities=30% Similarity=0.943 Sum_probs=39.9
Q ss_pred ccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCC-cEeCcccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDG-DWFCAQCLAA 191 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~-~W~C~~C~~~ 191 (331)
..|.+|+..+ +++.||+||+|+.+||++|++||+ ..+|.| +|+|+.|...
T Consensus 175 c~C~vC~~~~--~~~~lL~CD~C~~~yH~~CL~PPL-~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQ--DPDKQLMCDECDMAFHIYCLDPPL-SSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCC--C--CCEECSSSCCEECSCC--CCC-CSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCC--CCCCeEEcCCCCcceeCccCCCCc-ccCCCCCCCCCcCCcCc
Confidence 4799999865 568999999999999999999996 789999 9999999754
No 26
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.85 E-value=1.1e-09 Score=88.59 Aligned_cols=51 Identities=24% Similarity=0.603 Sum_probs=40.4
Q ss_pred ccccccccccC-----CCCCCeEEccCCCcccccccccCCCC--CCCCCCcEeCcccc
Q 038708 139 ILCAVCQSTDG-----DSKDPIVFCDGCDLMVHATCYGNPLV--KEIPDGDWFCAQCL 189 (331)
Q Consensus 139 ~~C~vC~~~~~-----~~~~~ll~Cd~C~~~~H~~C~g~p~~--~~ip~~~W~C~~C~ 189 (331)
..|.+|..++. .+.+.||.|++|+..||.+|++++.. ..++.+.|+|+.|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 47999987642 34579999999999999999997521 24678899999985
No 27
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.84 E-value=7.3e-10 Score=89.43 Aligned_cols=52 Identities=21% Similarity=0.581 Sum_probs=41.1
Q ss_pred cccccccccccC----CCCCCeEEccCCCcccccccccCC--CCCCCCCCcEeCcccc
Q 038708 138 GILCAVCQSTDG----DSKDPIVFCDGCDLMVHATCYGNP--LVKEIPDGDWFCAQCL 189 (331)
Q Consensus 138 ~~~C~vC~~~~~----~~~~~ll~Cd~C~~~~H~~C~g~p--~~~~ip~~~W~C~~C~ 189 (331)
..+|.+|...+. ...+.||.|++|+..||.+|++.. +...++.+.|+|+.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 458999987531 345789999999999999999842 2235778999999997
No 28
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.82 E-value=2.5e-09 Score=84.22 Aligned_cols=51 Identities=27% Similarity=0.737 Sum_probs=42.4
Q ss_pred cccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
.+.+.| ||+..+ +++.||.||.|+.+||..|+++++ ..+| +.|+|+.|...
T Consensus 26 ~d~vrC-iC~~~~--~~~~mi~Cd~C~~w~H~~C~~~~~-~~~p-~~w~C~~C~~~ 76 (98)
T 2lv9_A 26 TDVTRC-ICGFTH--DDGYMICCDKCSVWQHIDCMGIDR-QHIP-DTYLCERCQPR 76 (98)
T ss_dssp CCBCCC-TTSCCS--CSSCEEEBTTTCBEEETTTTTCCT-TSCC-SSBCCTTTSSS
T ss_pred CCCEEe-ECCCcc--CCCcEEEcCCCCCcCcCcCCCCCc-cCCC-CCEECCCCcCC
Confidence 345667 899865 568999999999999999999985 6677 48999999765
No 29
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.80 E-value=1.8e-09 Score=86.85 Aligned_cols=54 Identities=24% Similarity=0.690 Sum_probs=45.7
Q ss_pred cccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
.+-..|.+|+..+ +++.||+||.|+.+||++|++||+ ..+|.++|||+.|..-.
T Consensus 52 ~~C~~C~~C~~~~--~~~~ll~Cd~C~~~yH~~Cl~ppl-~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 52 PECKVCQNCKQSG--EDSKMLVCDTCDKGYHTFCLQPVM-KSVPTNGWKCKNCRICI 105 (111)
T ss_dssp TTTCCCTTTCCCS--CCTTEEECSSSCCEEEGGGSSSCC-SSCCSSCCCCHHHHCCS
T ss_pred CcCCcccccCccC--CCCCeeECCCCCcHHhHHhcCCcc-ccCCCCCcCCcCCcCcC
Confidence 3334788999865 457899999999999999999985 88999999999997754
No 30
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.78 E-value=1.6e-09 Score=77.63 Aligned_cols=50 Identities=28% Similarity=0.872 Sum_probs=39.4
Q ss_pred ccccccccccccccCCCCCCeEEccC--CC-cccccccccCCCCCCCCCCcEeCcccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDG--CD-LMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~--C~-~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
+.+..+| +|+..+ .+.||.||+ |. .+||..|+| +..+|.|.|||+.|...
T Consensus 7 ~~e~~~C-~C~~~~---~g~mi~CD~cdC~~~wfH~~Cvg---l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 7 PNEPTYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp --CCEET-TTTEEC---CSEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHHC-
T ss_pred CCCCCEE-ECCCcC---CCCEEEeCCCCCCCceEehhcCC---CCcCCCCCEECcCccCc
Confidence 4455678 899874 267999999 55 799999999 56789999999999753
No 31
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.76 E-value=4.8e-09 Score=77.72 Aligned_cols=53 Identities=26% Similarity=0.833 Sum_probs=43.1
Q ss_pred ccccccccccccccccCCCCCCeEEccC--CC-cccccccccCCCCCCCCCCcEeCccccccc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCDG--CD-LMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd~--C~-~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
.++.+..+| +|+..+ .+.||.||+ |. .+||..|+| +..+|.+.|||+.|....
T Consensus 11 ~d~~~~~~C-~C~~~~---~g~MI~CD~~~C~~~wfH~~Cvg---l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 11 VDPNEPTYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCTTSCCCS-TTCCCS---CSSEECCSCSSCSCCCEETTTTT---CSSCCSSCCCCTTTSSCS
T ss_pred cCCCCCCEE-ECCCCC---CCCEeEeeCCCCCCccEecccCC---cCcCCCCCEECCCCCccc
Confidence 344556788 899864 267999999 77 699999999 467889999999998764
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.74 E-value=2.7e-09 Score=93.81 Aligned_cols=48 Identities=29% Similarity=0.876 Sum_probs=43.0
Q ss_pred ccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
..|.||+.+ +.||+||+|+.+||.+|+.|++ ..+|.|+|+|+.|....
T Consensus 3 ~~C~~C~~~-----g~ll~Cd~C~~~~H~~Cl~p~l-~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP-----GDLVMCNQCEFCFHLDCHLPAL-QDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC-----SSCCCCTTTCCBCCSTTSTTCC-SSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCC-----CceeECCCCCchhccccCCCCc-ccCCCCCCCCcCccCCC
Confidence 579999975 5699999999999999999885 78999999999999874
No 33
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.73 E-value=3.4e-09 Score=75.73 Aligned_cols=50 Identities=26% Similarity=0.856 Sum_probs=40.0
Q ss_pred ccccccccccccccCCCCCCeEEccC--CC-cccccccccCCCCCCCCCCcEeCcccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDG--CD-LMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~--C~-~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
+.+..+| +|+..+ .+.|+.||+ |. .+||..|+| +..+|.+.|||+.|...
T Consensus 6 ~~e~~yC-~C~~~~---~g~mi~CD~~~C~~~wfH~~Cvg---l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 6 SNEPTYC-LCHQVS---YGEMIGCDNPDCPIEWFHFACVD---LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp --CCEET-TTTEEC---CSEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHHCC
T ss_pred CCCCcEE-ECCCCC---CCCeeEeeCCCCCCCCEecccCC---cccCCCCCEECcCccCc
Confidence 4455678 999874 267999999 77 699999999 56788899999999754
No 34
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.70 E-value=4.4e-09 Score=75.86 Aligned_cols=51 Identities=24% Similarity=0.804 Sum_probs=39.7
Q ss_pred cccccccccccccccCCCCCCeEEccC--CC-cccccccccCCCCCCCCCCcEeCcccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDG--CD-LMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~--C~-~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
++.+..+| +|+..+ .+.|+.||+ |. ..||..|+| +...|.+.|||+.|...
T Consensus 7 d~~e~~yC-~C~~~~---~g~MI~CD~c~C~~~WfH~~Cvg---l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVS---YGEMIGCDNEQCPIEWFHFSCVS---LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp ---CCEET-TTTEEC---CSEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHHTC
T ss_pred CCCCCcEE-ECCCCC---CCCeeeeeCCCCCcccEecccCC---cCcCCCCCEECcCcccC
Confidence 34455788 999863 257999999 54 899999999 46678899999999765
No 35
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.67 E-value=7.3e-09 Score=80.10 Aligned_cols=51 Identities=29% Similarity=0.871 Sum_probs=40.5
Q ss_pred cccccccccccccccCCCCCCeEEccCCC---cccccccccCCCCCCCCCCcEeCcc-cccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDGCD---LMVHATCYGNPLVKEIPDGDWFCAQ-CLAA 191 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~---~~~H~~C~g~p~~~~ip~~~W~C~~-C~~~ 191 (331)
++++..+| +|+..+. +.||.||+|+ .+||..|+| +..+|.+.|||+. |...
T Consensus 22 ~~~~~~yC-iC~~~~~---g~MI~CD~c~C~~eWfH~~CVg---l~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSY---GPMVACDNPACPFEWFHYGCVG---LKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp --CCSCCS-TTTCCCS---SSEECCCSSSCSCSCEETTTSS---CSSCTTSCCCSSHHHHHH
T ss_pred CCCCCcEE-EeCCCCC---CCEEEecCCCCccccCcCccCC---CCcCCCCCccCChhhcch
Confidence 34556788 9998642 4699999977 899999999 4668889999999 9855
No 36
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.61 E-value=1.8e-08 Score=77.98 Aligned_cols=52 Identities=27% Similarity=0.861 Sum_probs=42.3
Q ss_pred cccccccccccccccCCCCCCeEEccC--CC-cccccccccCCCCCCCCCCcEeCccccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDG--CD-LMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~--C~-~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
++.+..+| +|+..+ .+.||.||+ |. .+||..|+| +..+|.+.|||+.|....
T Consensus 32 d~~e~~yC-iC~~~~---~g~MI~CD~~dC~~~WfH~~CVg---l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVS---YGEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBC---CSCCCCCSCSSCSCCCCCSTTTT---CSSCCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCC---CCCEeEecCCCCCCCCEecccCC---cCcCCCCCEECcCccCcC
Confidence 34456788 999874 267999999 66 689999999 467888999999998764
No 37
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.40 E-value=1.5e-07 Score=68.97 Aligned_cols=54 Identities=19% Similarity=0.524 Sum_probs=43.0
Q ss_pred ccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
+++.+..+| +|+..+ +++.||.||.|...+|..|+|+.. ..+| +.|+|+.|...
T Consensus 14 ~~~~~~~~C-iC~~~~--~~~~MIqCd~C~~WfH~~Cvgi~~-~~~~-~~~~C~~C~~s 67 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPF--AGRPMIECNECHTWIHLSCAKIRK-SNVP-EVFVCQKCRDS 67 (68)
T ss_dssp CTTTTCCCS-TTCCCC--TTCCEEECTTTCCEEETTTTTCCT-TSCC-SSCCCHHHHTC
T ss_pred CCCCCceEe-ECCCcC--CCCCEEECCCCCccccccccCcCc-ccCC-CcEECCCCCCC
Confidence 344556788 999865 457899999999999999999764 3455 68999999765
No 38
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.29 E-value=4.1e-07 Score=67.40 Aligned_cols=57 Identities=25% Similarity=0.714 Sum_probs=43.2
Q ss_pred ccccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
.++....+| +|+..+ +++..||.||.|...||..|+|+.....+| ..|+|+.|....
T Consensus 11 ~~~~~~~~C-~C~~~~-~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~-~~~~C~~C~~~~ 67 (72)
T 1wee_A 11 GVDNWKVDC-KCGTKD-DDGERMLACDGCGVWHHTRCIGINNADALP-SKFLCFRCIELS 67 (72)
T ss_dssp SSCSSEECC-TTCCCS-CCSSCEEECSSSCEEEETTTTTCCTTSCCC-SCCCCHHHHHHC
T ss_pred CCCCcceEe-eCCCcc-CCCCcEEECCCCCCccCCeeeccCccccCC-CcEECCCccCCC
Confidence 345566789 799864 234579999999999999999976423344 789999998764
No 39
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.29 E-value=8.9e-08 Score=80.03 Aligned_cols=53 Identities=19% Similarity=0.496 Sum_probs=44.3
Q ss_pred cccccccccccccccCCCCCCeEEccCCCcccccccccCCCC----CC--CCCCcEeCcccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLV----KE--IPDGDWFCAQCLAA 191 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~----~~--ip~~~W~C~~C~~~ 191 (331)
++..+.+|.+|+.+ +.|+.||.|+.+||..|+.+++. .+ .|+++|+|+.|...
T Consensus 59 ~Dg~~d~C~vC~~G-----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TTSCBCSCSSSCCC-----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCCeecccCCC-----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 35566799999976 77999999999999999998752 23 38899999999875
No 40
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=2.1e-07 Score=68.69 Aligned_cols=50 Identities=36% Similarity=0.792 Sum_probs=40.0
Q ss_pred cccccccccccccCCCCCCeEEccCCC---cccccccccCCCCCCCCCCcEeCccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCD---LMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~---~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
.+..+| +|+..+ .+.||.||+|+ ..||..|+|+ ...|.+.|||+.|....
T Consensus 4 ~~~~yC-~C~~~~---~g~MI~CD~cdC~~~WfH~~Cvgl---~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 4 GSSGYC-ICNQVS---YGEMVGCDNQDCPIEWFHYGCVGL---TEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp SCCCCS-TTSCCC---CSSEECCSCTTCSCCCEEHHHHTC---SSCCSSCCCCHHHHHHH
T ss_pred CCCeEE-EcCCCC---CCCEeEeCCCCCCccCCccccccc---CcCCCCCEECCCCCccc
Confidence 344677 598863 35899999986 7999999994 56788999999998763
No 41
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.25 E-value=5.4e-07 Score=65.08 Aligned_cols=56 Identities=16% Similarity=0.437 Sum_probs=43.2
Q ss_pred ccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCC-CCcEeCccccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIP-DGDWFCAQCLAAN 192 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip-~~~W~C~~C~~~~ 192 (331)
+++..+|.+|+... ++.+.|+.||.|...||..|+|+.. ..+. .+.|+|+.|....
T Consensus 3 ~~e~~~C~~C~~~~-~~~~~mI~Cd~C~~WfH~~Cvgl~~-~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESY-AADEFWICCDLCEMWFHGKCVKITP-ARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCC-CSSSCEEECSSSCCEEETTTTTCCT-TGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCcc-CCCCCEEEccCCCCCCCccccCcCh-hHhcCCCcEECCCCcCcC
Confidence 34557899999864 2457899999999999999999753 2222 3789999998764
No 42
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=98.17 E-value=7.6e-07 Score=65.19 Aligned_cols=55 Identities=22% Similarity=0.552 Sum_probs=39.4
Q ss_pred ccccccccccccccCCCCCCeEEccC--CCcccccccccCCCCCC---CCCCcEeCccccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDG--CDLMVHATCYGNPLVKE---IPDGDWFCAQCLAAN 192 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~g~p~~~~---ip~~~W~C~~C~~~~ 192 (331)
++..+.| +|+..+ +.+.|+.||+ |...+|..|+|+..... .....|||+.|+..+
T Consensus 7 ~e~~v~C-~C~~~~--~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 7 PEAKVRC-ICSSTM--VNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp SSCEECC-TTCCCS--CCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred CCCCEEe-ECCCCc--CCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCcc
Confidence 3445677 898764 4578999995 99999999999642111 112479999998653
No 43
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.08 E-value=3.7e-07 Score=75.00 Aligned_cols=55 Identities=20% Similarity=0.567 Sum_probs=44.5
Q ss_pred ccccccccccccccccCCCCCCeEEccCCCcccccccccCCC----CCCC--CCCcEeCccccccc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPL----VKEI--PDGDWFCAQCLAAN 192 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~----~~~i--p~~~W~C~~C~~~~ 192 (331)
+++..+..|.||+++ +.|+.||.|+.+||..|+.+++ +.++ |.++|+|..|....
T Consensus 52 d~Dg~~~~C~vC~dG-----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG-----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CTTSCBSSCTTTCCC-----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCCCCCcCeecCCC-----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 345566789999976 7799999999999999998763 2344 78999999997763
No 44
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.07 E-value=1.7e-06 Score=65.08 Aligned_cols=54 Identities=20% Similarity=0.576 Sum_probs=42.0
Q ss_pred ccccccccccccccCCCCCCeEEcc--CCCcccccccccCCCCC-----CCCCCcEeCccccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCD--GCDLMVHATCYGNPLVK-----EIPDGDWFCAQCLAAN 192 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~g~p~~~-----~ip~~~W~C~~C~~~~ 192 (331)
+....+| +|+..+ +.+.|+.|| .|...+|..|+|++... .+ ...|||+.|....
T Consensus 13 ~~~~~~C-iC~~~~--~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~-~~~~~C~~C~~~~ 73 (78)
T 1wew_A 13 PEIKVRC-VCGNSL--ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPL-PESFYCEICRLTS 73 (78)
T ss_dssp CCCCCCC-SSCCCC--CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCS-CSSCCCHHHHHCC
T ss_pred CCCCEEe-ECCCcC--CCCCEEEECCccCCccccCEEEccccccccccccC-CCCEECCCCCccc
Confidence 3456788 899975 457999999 99999999999975321 12 3689999998764
No 45
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.01 E-value=8.7e-07 Score=66.25 Aligned_cols=54 Identities=20% Similarity=0.704 Sum_probs=40.8
Q ss_pred cccccccccccccCCCCCCeEEccCCCcccccccccCCCCCC--C--CCCcEeCccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKE--I--PDGDWFCAQCLAAN 192 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~--i--p~~~W~C~~C~~~~ 192 (331)
.+..+| +|+..+ +.+.||.||.|...||..|+|+..... + +...|+|+.|....
T Consensus 14 ~~~~~C-~C~~~~--~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPH--NNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCC--CSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCEE-ECCCcc--CCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 345678 899875 357899999999999999999642110 1 34789999998764
No 46
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.00 E-value=1.2e-06 Score=63.59 Aligned_cols=54 Identities=20% Similarity=0.621 Sum_probs=39.7
Q ss_pred ccccccccccccccCCCCCCeEEcc-CCCcccccccccCCCC-----CCCCCCcEeCcccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCD-GCDLMVHATCYGNPLV-----KEIPDGDWFCAQCL 189 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd-~C~~~~H~~C~g~p~~-----~~ip~~~W~C~~C~ 189 (331)
++....|.+|..+. .++..|+.|| +|...||..|.|+... ..-|.+.|+|+.|.
T Consensus 5 ~~~~~~C~~C~~p~-~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 5 SDPVYPCGICTNEV-NDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ----CBCTTTCSBC-CTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCcCcCccCCCcc-CCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 34456899999963 3557899999 9999999999996420 01367799999996
No 47
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.89 E-value=4.2e-06 Score=63.00 Aligned_cols=55 Identities=18% Similarity=0.431 Sum_probs=41.2
Q ss_pred cccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
....+| +|+... ++.+.||.||.|...||..|+|+..........|+|+.|....
T Consensus 10 ~~~~~C-~C~~~~-d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPY-NVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSC-CSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCcc-CCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344567 999864 2368899999999999999999653111123789999998764
No 48
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=97.89 E-value=4.9e-06 Score=57.56 Aligned_cols=44 Identities=20% Similarity=0.630 Sum_probs=36.0
Q ss_pred ccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccc
Q 038708 143 VCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLA 190 (331)
Q Consensus 143 vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~ 190 (331)
+|+..+ +++.|+.||.|...+|..|+|+.. ..+| +.|+|+.|..
T Consensus 8 ~C~~~~--~~~~MI~Cd~C~~W~H~~Cvgi~~-~~~~-~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPF--AGRPMIECNECHTWIHLSCAKIRK-SNVP-EVFVCQKCRD 51 (52)
T ss_dssp TTCCBC--TTCCEEECTTTCCEEETTTTTCCG-GGCC-SSCCCHHHHT
T ss_pred EeCCcC--CCCCEEEcCCCCccccccccCCCc-ccCC-CcEECcCCCC
Confidence 788764 457999999999999999999764 3344 7899999964
No 49
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.84 E-value=2.2e-06 Score=73.91 Aligned_cols=56 Identities=23% Similarity=0.607 Sum_probs=42.0
Q ss_pred ccccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
+.+..+| +|+.+. ++.+.|+.||.|+..||..|+|+........+.|+|+.|....
T Consensus 5 ~~~~~~C-~C~~~~-~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPE-DESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEEC-CTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCC-CCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3455789 999863 2457899999999999999999643111235799999999864
No 50
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.76 E-value=4.5e-06 Score=57.77 Aligned_cols=48 Identities=31% Similarity=0.641 Sum_probs=36.3
Q ss_pred cccccccccCCCCCCeEEcc-CCCcccccccccCCCCCCCCCCcEeCcccc
Q 038708 140 LCAVCQSTDGDSKDPIVFCD-GCDLMVHATCYGNPLVKEIPDGDWFCAQCL 189 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~ll~Cd-~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~ 189 (331)
.|.+|+.+. .++..|+.|| .|...||..|+|... .....+.|+|+.|.
T Consensus 4 ~cc~C~~p~-~~~~~mI~Cd~~C~~WfH~~Cvgl~~-~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPC-KDKVDWVQCDGGCDEWFHQVCVGVSP-EMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCC-CTTCCEEECTTTTCCEEETTTTTCCH-HHHHHSCCCCSCC-
T ss_pred cCCCCcCcc-CCCCcEEEeCCCCCccCcccccCCCc-cccCCCCEECCCCC
Confidence 478888874 3467899999 899999999999642 21223789999984
No 51
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.75 E-value=1e-05 Score=64.30 Aligned_cols=53 Identities=23% Similarity=0.608 Sum_probs=41.1
Q ss_pred ccccccccccCCCCCCeEEcc-CCCcccccccccCCCC--CC---CCCCcEeCccccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCD-GCDLMVHATCYGNPLV--KE---IPDGDWFCAQCLAAN 192 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd-~C~~~~H~~C~g~p~~--~~---ip~~~W~C~~C~~~~ 192 (331)
..|.+|..... +.+.|+.|| .|...||..|+|+... .. -|.+.|+|+.|....
T Consensus 4 ~~C~iC~~p~~-~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVN-DDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCC-TTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccC-CCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 57999998732 346799998 9999999999996420 01 266899999999874
No 52
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=97.70 E-value=9.8e-06 Score=60.34 Aligned_cols=51 Identities=29% Similarity=0.720 Sum_probs=38.5
Q ss_pred ccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCC-CcEeCccccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPD-GDWFCAQCLAAN 192 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~-~~W~C~~C~~~~ 192 (331)
.+| +|+... ++++.||.||.|...||..|+|+.. ..++. +.|+|+.|....
T Consensus 11 ~yC-iC~~~~-~~~~~MI~Cd~C~~WfH~~Cvg~~~-~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYC-VCRLPY-DVTRFMIECDACKDWFHGSCVGVEE-EEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EET-TTTEEC-CTTSCEEECTTTCCEEEHHHHTCCT-TTGGGBSSCCCHHHHHHH
T ss_pred eEE-ECCCcC-CCCCCEEEcCCCCCCEecccccccc-cccCCCCEEECCCCcccC
Confidence 455 899863 2357899999999999999999753 22222 579999998763
No 53
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.82 E-value=0.00025 Score=61.70 Aligned_cols=54 Identities=22% Similarity=0.642 Sum_probs=39.1
Q ss_pred ccccccccccCCC--CCCeEEccCCCcccccccccCCC-----CCCCCC-CcEeCccccccc
Q 038708 139 ILCAVCQSTDGDS--KDPIVFCDGCDLMVHATCYGNPL-----VKEIPD-GDWFCAQCLAAN 192 (331)
Q Consensus 139 ~~C~vC~~~~~~~--~~~ll~Cd~C~~~~H~~C~g~p~-----~~~ip~-~~W~C~~C~~~~ 192 (331)
..|.||+....++ +..|+.||.|...||..|.|+.. +..+|+ ..|+|+.|....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4699999864322 23599999999999999999642 011232 379999998874
No 54
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=96.54 E-value=0.00044 Score=68.82 Aligned_cols=54 Identities=22% Similarity=0.516 Sum_probs=40.2
Q ss_pred cccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCC-CCcEeCccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIP-DGDWFCAQCLAAN 192 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip-~~~W~C~~C~~~~ 192 (331)
.+..+| +|+..+ +..+.|+.||.|+..||..|+|... .... .+.|+|+.|....
T Consensus 35 ~~~~yC-~C~~~~-d~~~~MIqCd~C~~WfH~~Cvgl~~-~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPY-DVNRFMIECDICKDWFHGSCVGVEE-HHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEEC-CTTSCEEEBTTTCCEEEHHHHTCCG-GGGGGEEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcC-CCCCCeEEccCCCCceeeeecCcCc-ccccCCCEEECCCCcCCc
Confidence 344566 999863 2368899999999999999999643 2222 2679999999763
No 55
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.52 E-value=0.00049 Score=51.70 Aligned_cols=54 Identities=19% Similarity=0.463 Sum_probs=42.0
Q ss_pred ccccccccccccccCCCCCCeEEccCCCcccccccccCCC-----------CCCCCCCcEeCcccccc
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPL-----------VKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~-----------~~~ip~~~W~C~~C~~~ 191 (331)
...+..|.||... ..+.|+-|..|++.||..|+-.+. +...++.-|.|+.|.+.
T Consensus 12 ~~~D~~C~VC~~~---t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 12 VVNDEMCDVCEVW---TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CCCSCCCTTTCCC---CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCCCcccCccccc---cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 4466789999975 347788999999999999997631 12346678999999776
No 56
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=96.50 E-value=0.00095 Score=66.48 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=32.1
Q ss_pred CCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 151 SKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 151 ~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
++..|+.||.|+..||..|.|......-..+.|+|+.|...
T Consensus 54 ~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 54 NDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp STTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred cCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 45689999999999999999975311122378999999975
No 57
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=95.89 E-value=0.0035 Score=50.05 Aligned_cols=40 Identities=20% Similarity=0.526 Sum_probs=30.1
Q ss_pred CCCCeEEccCCCcccccccccCCCCCCCCC----CcEeCcccccc
Q 038708 151 SKDPIVFCDGCDLMVHATCYGNPLVKEIPD----GDWFCAQCLAA 191 (331)
Q Consensus 151 ~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~----~~W~C~~C~~~ 191 (331)
.+..|+.|+.|+..||..|++++. +.+++ +.|+|+.|...
T Consensus 71 ~~~~m~~C~~C~~~~H~~C~~~~~-~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 71 FEKKLMECCICNEIVHPGCLQMDG-EGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GGGSCEEETTTCCEECGGGCCSCC-CCEECSSSSSEEECTTTC--
T ss_pred cCcceEEeeecCCeEECCCCCCCc-cccccccCCCCeECCCCcCC
Confidence 456799999999999999999864 33322 35999999865
No 58
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=95.36 E-value=0.0019 Score=63.44 Aligned_cols=51 Identities=20% Similarity=0.474 Sum_probs=38.8
Q ss_pred cccccccccCCCCCCeEEccCCCcccccccccCCCCCCCC-CCcEeCccccccc
Q 038708 140 LCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIP-DGDWFCAQCLAAN 192 (331)
Q Consensus 140 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip-~~~W~C~~C~~~~ 192 (331)
...+|+... ++.+.|+.||.|...+|..|+|.+. ...+ .+.|+|+.|....
T Consensus 6 ~yCiC~~~~-d~~~~MIqCD~C~~WfH~~CVgi~~-~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYCLCRLPY-DVTRFMIECDMCQDWFHGSCVGVEE-EKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp EETTTTEEC-CTTSCEEECTTTCCEEEHHHHTCCH-HHHTTEEECCCHHHHHHH
T ss_pred eEEeCCCcC-CCCCCeEEcCCCCcccccccCCcCc-ccccCCCEEECCCCcccc
Confidence 455899863 2468899999999999999999643 2122 2689999998763
No 59
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.26 E-value=0.032 Score=39.51 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=25.6
Q ss_pred CccccccCCC---CCCeeEeCCCCCCceEecccccc
Q 038708 252 EKRCYICKSK---RGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 252 ~~~C~iC~~~---~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
...|.+|+.. .+.+|+|.. |..+||..|+-.
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~--C~~WfH~~Cvgl 39 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDL--CEMWFHGKCVKI 39 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSS--SCCEEETTTTTC
T ss_pred CCCCCCCCCccCCCCCEEEccC--CCCCCCccccCc
Confidence 3578899986 478999985 999999999833
No 60
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.24 E-value=0.034 Score=41.22 Aligned_cols=32 Identities=28% Similarity=0.846 Sum_probs=26.9
Q ss_pred cCccccccCCC--CCCeeEeCCCCCCceEeccccc
Q 038708 251 REKRCYICKSK--RGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 251 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
...+| +|+.. .|.||+|....|..+||..|.-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg 48 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI 48 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEc
Confidence 44678 79986 6899999966799999999983
No 61
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=94.04 E-value=0.03 Score=40.35 Aligned_cols=29 Identities=31% Similarity=0.858 Sum_probs=24.5
Q ss_pred ccccccCCC--CCCeeEeCCCCCCceEecccc
Q 038708 253 KRCYICKSK--RGCSVECSEPKCCLSFHVTCG 282 (331)
Q Consensus 253 ~~C~iC~~~--~G~~i~C~~~~C~~~fHv~CA 282 (331)
.+| +|+.. .|.||+|....|..+||..|.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV 41 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTS
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhC
Confidence 456 79775 589999986689999999997
No 62
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.47 E-value=0.043 Score=40.71 Aligned_cols=29 Identities=28% Similarity=0.614 Sum_probs=24.2
Q ss_pred CccccccCCC---CCCeeEeCCCCCCceEeccccc
Q 038708 252 EKRCYICKSK---RGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 252 ~~~C~iC~~~---~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
...| +|+.. .+.+|+|.. |..+||..|+-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~--C~~WfH~~Cvg 43 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGL--CQDWFHGSCVG 43 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTT--TCCEEEHHHHT
T ss_pred ccEE-EcCCccCCCCceEEcCC--CCCcEEeeecC
Confidence 3566 89986 478999985 99999999983
No 63
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=93.45 E-value=0.051 Score=43.14 Aligned_cols=77 Identities=17% Similarity=0.331 Sum_probs=46.1
Q ss_pred ccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccccc----ccccccccccCCC-------
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDE----NRAFSCCLCPVGG------- 207 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~----~~~~~C~lC~~~g------- 207 (331)
.+|.+|++.+ |+.|+..+|.+|+|++. |.|..|....-. .....|.+|..-+
T Consensus 8 ~~C~~C~~~~---------C~~C~~c~~~~~~~~~~--------~~~~~c~~~~~~~~~~~~~~~c~~c~~c~~c~~~~~ 70 (117)
T 4bbq_A 8 RKCKACVQGE---------CGVCHYCRDMKKFGGPG--------RMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQD 70 (117)
T ss_dssp SCSHHHHSCC---------CSCSHHHHHSGGGTSCC--------CSCCCCGGGCCSSCBCCTTCBCTTTCCBCCHHHHCC
T ss_pred CcCcCcCCcC---------CCCCCCCcCCcccCCCC--------ccccchhheeeccccccccccccccCcccccccccc
Confidence 4677787652 99999999999998653 666666544211 0112233332211
Q ss_pred --CCC-ccccccccceeeccccCCeeEE
Q 038708 208 --GAM-KPTKDGLWAHVVCAVLVPEVFF 232 (331)
Q Consensus 208 --Gal-k~t~~~~wvH~~Cal~~pe~~f 232 (331)
..| .-.....|+|..|+-...+..+
T Consensus 71 ~~~~m~~C~~C~~~~H~~C~~~~~~~~~ 98 (117)
T 4bbq_A 71 FEKKLMECCICNEIVHPGCLQMDGEGLL 98 (117)
T ss_dssp GGGSCEEETTTCCEECGGGCCSCCCCEE
T ss_pred cCcceEEeeecCCeEECCCCCCCccccc
Confidence 112 2233678999999877655543
No 64
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.83 E-value=0.08 Score=36.53 Aligned_cols=30 Identities=27% Similarity=0.740 Sum_probs=26.1
Q ss_pred CccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 252 EKRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 252 ~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
...|.+|+.. |.+|.|.. |..+||..|...
T Consensus 9 ~~~C~vC~~~-g~ll~Cd~--C~~~~H~~Cl~p 38 (56)
T 2yql_A 9 EDFCSVCRKS-GQLLMCDT--CSRVYHLDCLDP 38 (56)
T ss_dssp CCSCSSSCCS-SCCEECSS--SSCEECSSSSSS
T ss_pred CCCCccCCCC-CeEEEcCC--CCcceECccCCC
Confidence 4679999987 88999985 999999999864
No 65
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.79 E-value=0.062 Score=39.06 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=24.9
Q ss_pred cCccccccCCC--CC-CeeEeCCCCCCceEecccccc
Q 038708 251 REKRCYICKSK--RG-CSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 251 ~~~~C~iC~~~--~G-~~i~C~~~~C~~~fHv~CA~~ 284 (331)
+..+| +|+.. .| .+|+|.. |..+||..|+-.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~--C~~W~H~~Cvg~ 48 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDG--CGVWHHTRCIGI 48 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSS--SCEEEETTTTTC
T ss_pred cceEe-eCCCccCCCCcEEECCC--CCCccCCeeecc
Confidence 44678 69986 35 6999985 999999999844
No 66
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=92.69 E-value=0.083 Score=36.96 Aligned_cols=30 Identities=27% Similarity=0.740 Sum_probs=26.0
Q ss_pred CccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 252 EKRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 252 ~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
...|.+|+.. |.+|.|.. |..+||..|...
T Consensus 5 ~~~C~vC~~~-g~ll~Cd~--C~~~fH~~Cl~p 34 (60)
T 2puy_A 5 EDFCSVCRKS-GQLLMCDT--CSRVYHLDCLDP 34 (60)
T ss_dssp CSSCTTTCCC-SSCEECSS--SSCEECGGGSSS
T ss_pred CCCCcCCCCC-CcEEEcCC--CCcCEECCcCCC
Confidence 3579999986 89999985 999999999864
No 67
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=92.63 E-value=0.085 Score=38.07 Aligned_cols=30 Identities=27% Similarity=0.676 Sum_probs=24.3
Q ss_pred ccccccCCC--CCCeeEeCCCCCCceEeccccccC
Q 038708 253 KRCYICKSK--RGCSVECSEPKCCLSFHVTCGLSE 285 (331)
Q Consensus 253 ~~C~iC~~~--~G~~i~C~~~~C~~~fHv~CA~~~ 285 (331)
..| +|+.. ++.+|+|.. |..+||..|.-..
T Consensus 20 ~~C-iC~~~~~~~~MIqCd~--C~~WfH~~Cvgi~ 51 (68)
T 3o70_A 20 VTC-FCMKPFAGRPMIECNE--CHTWIHLSCAKIR 51 (68)
T ss_dssp CCS-TTCCCCTTCCEEECTT--TCCEEETTTTTCC
T ss_pred eEe-ECCCcCCCCCEEECCC--CCccccccccCcC
Confidence 567 99986 346999986 9999999998443
No 68
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=92.21 E-value=0.1 Score=37.24 Aligned_cols=30 Identities=30% Similarity=0.793 Sum_probs=25.9
Q ss_pred CccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 252 EKRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 252 ~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
...|.+|+.. |.+|.|.. |..+||..|.-.
T Consensus 8 ~~~C~vC~~~-g~ll~CD~--C~~~fH~~Cl~p 37 (66)
T 1xwh_A 8 EDECAVCRDG-GELICCDG--CPRAFHLACLSP 37 (66)
T ss_dssp CCSBSSSSCC-SSCEECSS--CCCEECTTTSSS
T ss_pred CCCCccCCCC-CCEEEcCC--CChhhcccccCC
Confidence 4679999986 88999985 999999999863
No 69
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.18 E-value=0.069 Score=39.20 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=23.9
Q ss_pred CccccccCCCC--CCeeEeCCCCCCceEeccccc
Q 038708 252 EKRCYICKSKR--GCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 252 ~~~C~iC~~~~--G~~i~C~~~~C~~~fHv~CA~ 283 (331)
..+| +|+... +.+|+|.. |..+||..|.-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~--C~~WfH~~Cvg 46 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDR--CEEWFHGDCVG 46 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSS--SCCEEEHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCC--CCCcEeCeEEc
Confidence 4567 899873 68999985 99999999983
No 70
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=92.04 E-value=0.14 Score=37.18 Aligned_cols=31 Identities=29% Similarity=0.746 Sum_probs=25.8
Q ss_pred CccccccCCC-CCCeeEeCCCCCC-ceEeccccc
Q 038708 252 EKRCYICKSK-RGCSVECSEPKCC-LSFHVTCGL 283 (331)
Q Consensus 252 ~~~C~iC~~~-~G~~i~C~~~~C~-~~fHv~CA~ 283 (331)
...| +|+.. .|.+|.|....|. .+||..|.-
T Consensus 16 ~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg 48 (71)
T 1wen_A 16 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG 48 (71)
T ss_dssp CCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT
T ss_pred CCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC
Confidence 4577 79984 4889999987798 799999984
No 71
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=91.94 E-value=0.12 Score=35.17 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=23.2
Q ss_pred cccccCCCC---CCeeEeCCCCCCceEeccccc
Q 038708 254 RCYICKSKR---GCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 254 ~C~iC~~~~---G~~i~C~~~~C~~~fHv~CA~ 283 (331)
.|.+|+.+. +.+|+|.. .|..+||..|+-
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvg 35 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVG 35 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTT
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccC
Confidence 377888763 56999984 699999999983
No 72
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=91.67 E-value=0.11 Score=39.58 Aligned_cols=31 Identities=35% Similarity=0.717 Sum_probs=25.1
Q ss_pred CccccccCCC-CCCeeEeCCCCCC-ceEeccccc
Q 038708 252 EKRCYICKSK-RGCSVECSEPKCC-LSFHVTCGL 283 (331)
Q Consensus 252 ~~~C~iC~~~-~G~~i~C~~~~C~-~~fHv~CA~ 283 (331)
...| +|+.. .|.||.|....|. .+||..|.-
T Consensus 26 ~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg 58 (90)
T 2jmi_A 26 EVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG 58 (90)
T ss_dssp SCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS
T ss_pred CcEE-EeCCCCCCCEEEecCCCCccccCcCccCC
Confidence 4577 89974 5889999986677 899999983
No 73
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=91.23 E-value=0.13 Score=39.74 Aligned_cols=29 Identities=31% Similarity=0.737 Sum_probs=23.6
Q ss_pred ccccccCCC--CCCeeEeCCCCCCceEecccccc
Q 038708 253 KRCYICKSK--RGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 253 ~~C~iC~~~--~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
..| +|+.. .|.+|+|.. |..+||..|.-.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~--C~~w~H~~C~~~ 59 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDK--CSVWQHIDCMGI 59 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTT--TCBEEETTTTTC
T ss_pred EEe-ECCCccCCCcEEEcCC--CCCcCcCcCCCC
Confidence 357 78875 488999986 999999999843
No 74
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.13 E-value=0.13 Score=36.18 Aligned_cols=30 Identities=23% Similarity=0.688 Sum_probs=26.1
Q ss_pred CccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 252 EKRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 252 ~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
...|.+|+.. |.+|.|.. |..+||..|.-.
T Consensus 11 ~~~C~vC~~~-g~ll~CD~--C~~~fH~~Cl~p 40 (61)
T 2l5u_A 11 QDYCEVCQQG-GEIILCDT--CPRAYHMVCLDP 40 (61)
T ss_dssp CSSCTTTSCC-SSEEECSS--SSCEEEHHHHCT
T ss_pred CCCCccCCCC-CcEEECCC--CChhhhhhccCC
Confidence 4689999986 89999985 999999999865
No 75
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=91.09 E-value=0.1 Score=36.47 Aligned_cols=30 Identities=30% Similarity=0.745 Sum_probs=25.0
Q ss_pred ccccccCCC-CCCeeEeCCCCCC-ceEeccccc
Q 038708 253 KRCYICKSK-RGCSVECSEPKCC-LSFHVTCGL 283 (331)
Q Consensus 253 ~~C~iC~~~-~G~~i~C~~~~C~-~~fHv~CA~ 283 (331)
..| +|+.. .|.+|.|....|. .+||..|.-
T Consensus 10 ~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg 41 (59)
T 3c6w_A 10 TYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD 41 (59)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGT
T ss_pred cEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC
Confidence 466 89983 4889999987898 699999984
No 76
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=91.09 E-value=0.1 Score=36.98 Aligned_cols=31 Identities=26% Similarity=0.655 Sum_probs=25.4
Q ss_pred ccccccCCC-CCCeeEeCCCCCC-ceEecccccc
Q 038708 253 KRCYICKSK-RGCSVECSEPKCC-LSFHVTCGLS 284 (331)
Q Consensus 253 ~~C~iC~~~-~G~~i~C~~~~C~-~~fHv~CA~~ 284 (331)
..| +|+.. .|.+|.|....|. .+||..|.-.
T Consensus 12 ~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl 44 (62)
T 2g6q_A 12 TYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSL 44 (62)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGTC
T ss_pred cEE-ECCCCCCCCeeeeeCCCCCcccEecccCCc
Confidence 467 89983 4889999987788 9999999853
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.02 E-value=0.085 Score=38.51 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=24.7
Q ss_pred ccccccCCC--CCCeeEeCCCCCCceEecccccc
Q 038708 253 KRCYICKSK--RGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 253 ~~C~iC~~~--~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
..|.+|+.. ++.+|.|.. |..+||..|+-.
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~--C~~wfH~~Cv~~ 50 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDD--CDDWYHWPCVGI 50 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSS--SSSEEEHHHHTC
T ss_pred cCCCCCCCCCCCCCEEEcCC--CCcccccccCCC
Confidence 469999986 346999985 999999999843
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.89 E-value=0.13 Score=36.14 Aligned_cols=31 Identities=29% Similarity=0.673 Sum_probs=26.2
Q ss_pred cCccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 251 REKRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 251 ~~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
....|.+|+.. |.+|.|.. |...||..|...
T Consensus 8 ~~~~C~vC~~~-g~ll~Cd~--C~~~fH~~Cl~p 38 (61)
T 1mm2_A 8 HMEFCRVCKDG-GELLCCDT--CPSSYHIHCLNP 38 (61)
T ss_dssp SCSSCTTTCCC-SSCBCCSS--SCCCBCSSSSSS
T ss_pred CCCcCCCCCCC-CCEEEcCC--CCHHHcccccCC
Confidence 34679999975 88999986 999999999864
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.63 E-value=0.1 Score=37.43 Aligned_cols=28 Identities=29% Similarity=0.823 Sum_probs=24.4
Q ss_pred ccccccCCCCCCeeEeCCCCCCceEeccccc
Q 038708 253 KRCYICKSKRGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 253 ~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
..|.+|+.. |.+|.|.. |...||..|..
T Consensus 13 ~~C~vC~~~-~~ll~Cd~--C~~~~H~~Cl~ 40 (66)
T 2lri_C 13 ARCGVCGDG-TDVLRCTH--CAAAFHWRCHF 40 (66)
T ss_dssp CCCTTTSCC-TTCEECSS--SCCEECHHHHC
T ss_pred CCcCCCCCC-CeEEECCC--CCCceecccCC
Confidence 469999875 88999986 99999999974
No 80
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=90.62 E-value=0.19 Score=33.99 Aligned_cols=28 Identities=25% Similarity=0.593 Sum_probs=22.5
Q ss_pred ccccCCC--CCCeeEeCCCCCCceEecccccc
Q 038708 255 CYICKSK--RGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 255 C~iC~~~--~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
-.+|+.. ++.+|+|.. |..+||..|.-.
T Consensus 6 ~C~C~~~~~~~~MI~Cd~--C~~W~H~~Cvgi 35 (52)
T 3o7a_A 6 TCFCMKPFAGRPMIECNE--CHTWIHLSCAKI 35 (52)
T ss_dssp CSTTCCBCTTCCEEECTT--TCCEEETTTTTC
T ss_pred EEEeCCcCCCCCEEEcCC--CCccccccccCC
Confidence 3478875 358999986 999999999843
No 81
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.47 E-value=0.15 Score=38.99 Aligned_cols=31 Identities=29% Similarity=0.746 Sum_probs=25.8
Q ss_pred CccccccCCC-CCCeeEeCCCCCC-ceEeccccc
Q 038708 252 EKRCYICKSK-RGCSVECSEPKCC-LSFHVTCGL 283 (331)
Q Consensus 252 ~~~C~iC~~~-~G~~i~C~~~~C~-~~fHv~CA~ 283 (331)
...| +|+.. .|.||.|....|. .+||..|.-
T Consensus 36 ~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg 68 (91)
T 1weu_A 36 PTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG 68 (91)
T ss_dssp CBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT
T ss_pred CcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC
Confidence 4567 99984 4889999987788 799999984
No 82
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=90.31 E-value=0.11 Score=36.43 Aligned_cols=30 Identities=30% Similarity=0.776 Sum_probs=24.7
Q ss_pred ccccccCCC-CCCeeEeCCCCCC-ceEeccccc
Q 038708 253 KRCYICKSK-RGCSVECSEPKCC-LSFHVTCGL 283 (331)
Q Consensus 253 ~~C~iC~~~-~G~~i~C~~~~C~-~~fHv~CA~ 283 (331)
..| +|+.. .|.+|.|....|. .+||..|.-
T Consensus 11 ~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg 42 (60)
T 2vnf_A 11 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG 42 (60)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGT
T ss_pred CEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC
Confidence 456 89874 4889999987788 899999985
No 83
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=90.11 E-value=0.17 Score=39.64 Aligned_cols=29 Identities=28% Similarity=0.636 Sum_probs=25.1
Q ss_pred ccccccCCC---CCCeeEeCCCCCCceEecccc
Q 038708 253 KRCYICKSK---RGCSVECSEPKCCLSFHVTCG 282 (331)
Q Consensus 253 ~~C~iC~~~---~G~~i~C~~~~C~~~fHv~CA 282 (331)
..|.+|++. .|.+|+|. ..|..+||..|.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CV 35 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCE-ASCQKWFHRECT 35 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGT
T ss_pred CCCCCCCCccCCCCCEEEec-CCcccccccccC
Confidence 469999987 57899998 469999999998
No 84
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.58 E-value=0.4 Score=36.35 Aligned_cols=31 Identities=32% Similarity=0.854 Sum_probs=26.2
Q ss_pred cCccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 251 REKRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 251 ~~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
....|.+|+.. |.+|.|.. |...||..|...
T Consensus 24 n~~~C~vC~~~-g~LL~CD~--C~~~fH~~Cl~P 54 (88)
T 1fp0_A 24 SATICRVCQKP-GDLVMCNQ--CEFCFHLDCHLP 54 (88)
T ss_dssp SSSCCSSSCSS-SCCEECTT--SSCEECTTSSST
T ss_pred CCCcCcCcCCC-CCEEECCC--CCCceecccCCC
Confidence 34689999987 78899985 999999999854
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.40 E-value=0.19 Score=33.75 Aligned_cols=29 Identities=34% Similarity=0.820 Sum_probs=23.9
Q ss_pred cccccCCCC--CCeeEeCCCCCCceEecccccc
Q 038708 254 RCYICKSKR--GCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 254 ~C~iC~~~~--G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
.|.+|+... +.+|.|.. |..+||..|...
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~--C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDE--CNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECTT--TCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECCC--CChhhCcccCCC
Confidence 589999763 57899985 999999999853
No 86
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=88.02 E-value=0.34 Score=38.12 Aligned_cols=31 Identities=29% Similarity=0.710 Sum_probs=26.7
Q ss_pred CccccccCCCCCCeeEeCCCCCCceEeccccc
Q 038708 252 EKRCYICKSKRGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 252 ~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
...|.+|+. +|.+|.|....|..+||..|.-
T Consensus 15 ~~~C~~C~~-~G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 15 EDYCFQCGD-GGELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCTTTCC-CSEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCcCCC-CCcEeEECCCCCCcccccccCc
Confidence 467999995 4899999977899999999985
No 87
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=87.85 E-value=0.13 Score=43.58 Aligned_cols=28 Identities=29% Similarity=0.687 Sum_probs=23.9
Q ss_pred CccccccCCC---CCCeeEeCCCCCCceEecccc
Q 038708 252 EKRCYICKSK---RGCSVECSEPKCCLSFHVTCG 282 (331)
Q Consensus 252 ~~~C~iC~~~---~G~~i~C~~~~C~~~fHv~CA 282 (331)
...| +|+.. .|.+|+|.. |..+||..|.
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~--C~~WfH~~Cv 38 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDR--CQNWYHGRCV 38 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTT--TCCEEEHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCC--CCchhChhhc
Confidence 4678 99986 477999985 9999999998
No 88
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=86.61 E-value=0.48 Score=33.44 Aligned_cols=31 Identities=26% Similarity=0.644 Sum_probs=25.9
Q ss_pred CccccccCCC----CCCeeEeCCCCCCceEecccccc
Q 038708 252 EKRCYICKSK----RGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 252 ~~~C~iC~~~----~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
...|.+|+.. .+.+|.|.. |...||..|...
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDK--CGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSS--SCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECCC--CChHHHhhhCCC
Confidence 3579999976 278999985 999999999865
No 89
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.51 E-value=0.48 Score=34.90 Aligned_cols=28 Identities=29% Similarity=0.821 Sum_probs=24.0
Q ss_pred cccccCCC--CCCeeEeCCCCCCceEeccccc
Q 038708 254 RCYICKSK--RGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 254 ~C~iC~~~--~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
.|.+|+.. .|.+|.|.. |...||..|.-
T Consensus 28 ~C~vC~~~~~~~~ll~CD~--C~~~yH~~Cl~ 57 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDE--CNVAYHIYCLN 57 (77)
T ss_dssp SCSSSCCCCCSTTEEECSS--SCCEEETTSSS
T ss_pred CCcCcCCcCCCCCEEEcCC--CCccccccccC
Confidence 58899974 578999985 99999999986
No 90
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=86.38 E-value=0.52 Score=40.34 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=23.3
Q ss_pred cccccCCCCCCeEEccCCCcccccccccCCC
Q 038708 144 CQSTDGDSKDPIVFCDGCDLMVHATCYGNPL 174 (331)
Q Consensus 144 C~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~ 174 (331)
|+.. ++-.-.||+|+.|...||..|+..+.
T Consensus 10 CG~~-~~~~~~mLqC~~C~qWFH~~Cl~~~~ 39 (177)
T 3rsn_A 10 EENG-RQLGEVELQCGICTKWFTADTFGIDT 39 (177)
T ss_dssp -CTT-CCTTSCEEECTTTCCEEEGGGGTCCC
T ss_pred cCCC-CCCCceeEeeccccceecHHHhcccc
Confidence 5553 34567899999999999999998654
No 91
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=86.34 E-value=0.35 Score=34.92 Aligned_cols=28 Identities=29% Similarity=0.791 Sum_probs=23.2
Q ss_pred cccccCCC--CCCeeEeCCCCCCceEeccccc
Q 038708 254 RCYICKSK--RGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 254 ~C~iC~~~--~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
.|.+|++. .|.+|.|.. |...||..|.-
T Consensus 20 ~C~~C~~~~~~~~ll~CD~--C~~~yH~~Cl~ 49 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDE--CDMAFHIYCLD 49 (70)
T ss_dssp SBTTTCCCSCGGGEEECTT--TCCEEEGGGSS
T ss_pred CCcCCCCcCCCCCEEEcCC--CCCceecccCC
Confidence 47788864 478999985 99999999985
No 92
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=86.02 E-value=0.29 Score=34.89 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=24.2
Q ss_pred ccccccCCCC---CCeeEeCCCCCCceEecccc
Q 038708 253 KRCYICKSKR---GCSVECSEPKCCLSFHVTCG 282 (331)
Q Consensus 253 ~~C~iC~~~~---G~~i~C~~~~C~~~fHv~CA 282 (331)
..|.+|+++. ..+|+|.. .|..+||..|.
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cv 40 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEA-SCQKWFHRICT 40 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHH
T ss_pred CcCccCCCccCCCCCeEeccc-CccccCchhcc
Confidence 4699999863 46899983 69999999997
No 93
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=85.68 E-value=0.68 Score=33.26 Aligned_cols=27 Identities=11% Similarity=-0.059 Sum_probs=23.9
Q ss_pred cccccccccchhhhhhhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
..+.+...||..|.+....||+|+..+
T Consensus 36 C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 36 CNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp TSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 556677999999999889999999998
No 94
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=85.52 E-value=0.12 Score=41.34 Aligned_cols=39 Identities=23% Similarity=0.649 Sum_probs=29.8
Q ss_pred CeEEccCCCcccccccccCCC-----CCCCCC-CcEeCccccccc
Q 038708 154 PIVFCDGCDLMVHATCYGNPL-----VKEIPD-GDWFCAQCLAAN 192 (331)
Q Consensus 154 ~ll~Cd~C~~~~H~~C~g~p~-----~~~ip~-~~W~C~~C~~~~ 192 (331)
.|+.||.|..++|..|.+.+. +..+|+ ..|.|+.|....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 388999999999999998642 134553 479999998763
No 95
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.23 E-value=0.75 Score=34.66 Aligned_cols=31 Identities=29% Similarity=0.681 Sum_probs=26.0
Q ss_pred CccccccCCC----CCCeeEeCCCCCCceEecccccc
Q 038708 252 EKRCYICKSK----RGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 252 ~~~C~iC~~~----~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
...|.+|+.. .+.+|.|.. |...||..|...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~--C~~~yH~~Cl~P 50 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQE--CHNLYHQDCHKP 50 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSS--SCCEEETTTSSS
T ss_pred CCcCCCCCCCCCCCCCceEECCC--CCCeEcCccCCC
Confidence 4679999987 368899986 999999999754
No 96
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=83.33 E-value=0.73 Score=33.35 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=25.9
Q ss_pred CccccccCCCC----CCeeEeCCCCCCceEeccccccC
Q 038708 252 EKRCYICKSKR----GCSVECSEPKCCLSFHVTCGLSE 285 (331)
Q Consensus 252 ~~~C~iC~~~~----G~~i~C~~~~C~~~fHv~CA~~~ 285 (331)
...|.+|+... +.+|.|.. |..+||..|.-..
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~--C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDM--CNLAVHQECYGVP 51 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSS--SCCEEEHHHHTCS
T ss_pred CCCCCCCCCCCCCCCCCEEECCC--CCCccccccCCCC
Confidence 35799998763 58899984 9999999998543
No 97
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=82.58 E-value=0.73 Score=39.65 Aligned_cols=29 Identities=21% Similarity=0.539 Sum_probs=23.7
Q ss_pred ccccccCCC------CCCeeEeCCCCCCceEeccccc
Q 038708 253 KRCYICKSK------RGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 253 ~~C~iC~~~------~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
..|.+|++. .+.+|+|.. |..+||..|.-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~--C~~W~H~~Cvg 37 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGK--CDRWVHSKCEN 37 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTT--TCCEEEGGGSS
T ss_pred CcCCCCcCccCCcccCCCeEECCC--CCcccchhccc
Confidence 469999975 235999985 99999999983
No 98
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.42 E-value=0.44 Score=31.71 Aligned_cols=27 Identities=7% Similarity=-0.137 Sum_probs=23.7
Q ss_pred cccccccccchhhhhhhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
..+.....||..|.+....||+|+..+
T Consensus 27 C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 27 CGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp SCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 566677999999999999999999876
No 99
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=82.19 E-value=0.42 Score=34.88 Aligned_cols=27 Identities=26% Similarity=0.560 Sum_probs=22.2
Q ss_pred ccccCCC---CCCeeEeCCCCCCceEeccccc
Q 038708 255 CYICKSK---RGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 255 C~iC~~~---~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
..+|+.. .+.+|+|.. |..+||..|.-
T Consensus 12 yCiC~~~~~~~~~MI~Cd~--C~~WfH~~Cvg 41 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDA--CKDWFHGSCVG 41 (75)
T ss_dssp ETTTTEECCTTSCEEECTT--TCCEEEHHHHT
T ss_pred EEECCCcCCCCCCEEEcCC--CCCCEeccccc
Confidence 3488875 368999986 99999999984
No 100
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.64 E-value=0.73 Score=33.25 Aligned_cols=31 Identities=32% Similarity=0.585 Sum_probs=24.1
Q ss_pred ccccccCCC-CCCeeEeCCCCCC-ceEecccccc
Q 038708 253 KRCYICKSK-RGCSVECSEPKCC-LSFHVTCGLS 284 (331)
Q Consensus 253 ~~C~iC~~~-~G~~i~C~~~~C~-~~fHv~CA~~ 284 (331)
.+| +|+.. .|.||+|....|. .+||..|.-.
T Consensus 7 ~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl 39 (70)
T 1x4i_A 7 GYC-ICNQVSYGEMVGCDNQDCPIEWFHYGCVGL 39 (70)
T ss_dssp CCS-TTSCCCCSSEECCSCTTCSCCCEEHHHHTC
T ss_pred eEE-EcCCCCCCCEeEeCCCCCCccCCccccccc
Confidence 456 58874 5899999986674 8999999843
No 101
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.40 E-value=0.36 Score=35.46 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=25.2
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...+.+...||..|.+..+.||+|++.+
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp TTSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 4677788999999999999999999988
No 102
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.92 E-value=0.73 Score=32.92 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=23.4
Q ss_pred cccccccccchhhhhhhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
..+.+...||..|.+....||+|+..+
T Consensus 44 C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 44 CNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp TTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred CCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 455666899999999999999999987
No 103
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=80.28 E-value=0.6 Score=32.75 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=25.0
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSSD 66 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f~ 66 (331)
...+.....||..|.+....||+|+..+.
T Consensus 34 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 34 ECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 45667778999999999999999999983
No 104
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=80.23 E-value=0.42 Score=37.71 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=24.8
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...+.+...||..|.+....||+|+..+
T Consensus 31 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (133)
T 4ap4_A 31 ECGHVFCSQCLRDSLKNANTCPTCRKKI 58 (133)
T ss_dssp TTCCEEEHHHHHHHHTTCSBCTTTCCBC
T ss_pred CCCChhhHHHHHHHHHhCCCCCCCCCcC
Confidence 4567778999999999999999999998
No 105
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.59 E-value=1.1 Score=38.14 Aligned_cols=29 Identities=28% Similarity=0.818 Sum_probs=24.6
Q ss_pred ccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 253 KRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 253 ~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
..|.+|+.. |.++-|.. |...||..|...
T Consensus 5 ~~C~~C~~~-g~ll~Cd~--C~~~~H~~C~~p 33 (184)
T 3o36_A 5 DWCAVCQNG-GELLCCEK--CPKVFHLSCHVP 33 (184)
T ss_dssp SSCTTTCCC-SSCEECSS--SSCEECTTTSSS
T ss_pred CccccCCCC-CeeeecCC--CCcccCccccCC
Confidence 469999976 88899986 999999999743
No 106
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.55 E-value=0.85 Score=34.67 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=24.4
Q ss_pred ccccccCCCC--CCeeEeCCCCCCceEeccccc
Q 038708 253 KRCYICKSKR--GCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 253 ~~C~iC~~~~--G~~i~C~~~~C~~~fHv~CA~ 283 (331)
..|.+|+... +.+|.|.. |..+||..|.-
T Consensus 17 ~~C~vC~~~~~~~~ll~CD~--C~~~~H~~Cl~ 47 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCDG--CDDNYHIFCLL 47 (92)
T ss_dssp CCCSSSCCSGGGGGCEECTT--TCCEECSSSSS
T ss_pred CCCccCCCcCCCCCEEEcCC--CCchhccccCC
Confidence 4799999873 35899985 99999999985
No 107
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=78.91 E-value=0.75 Score=30.47 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=23.4
Q ss_pred cccccccccchhhhhhhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
..+.....||..|.+....||+|+..+
T Consensus 27 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp TSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 456667899999999999999999886
No 108
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=77.70 E-value=0.73 Score=31.44 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=24.5
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...+.....||..|.+....||+|+..+
T Consensus 27 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 54 (64)
T 2xeu_A 27 ECGHVFCSQCLRDSLKNANTCPTCRKKI 54 (64)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCchhHHHHHHHHHcCCCCCCCCccC
Confidence 4566777999999999999999999998
No 109
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=77.35 E-value=0.57 Score=36.58 Aligned_cols=28 Identities=7% Similarity=-0.060 Sum_probs=24.9
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...+.+...||..|.+..+.||+|++.|
T Consensus 72 ~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp TTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred ccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 4567778999999999999999999998
No 110
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.33 E-value=0.62 Score=33.12 Aligned_cols=27 Identities=11% Similarity=-0.100 Sum_probs=23.5
Q ss_pred cccccccccchhhhhhhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
..+.+...||..|.+....||+|+..+
T Consensus 36 C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 36 CKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp TTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 455666899999999999999999998
No 111
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=75.99 E-value=0.54 Score=37.47 Aligned_cols=28 Identities=7% Similarity=-0.060 Sum_probs=0.0
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...+.+...||..|.+..+.||+|+..|
T Consensus 83 ~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 83 VCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ----------------------------
T ss_pred CcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 4677788999999999999999999998
No 112
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=75.47 E-value=0.75 Score=32.18 Aligned_cols=27 Identities=7% Similarity=-0.155 Sum_probs=23.0
Q ss_pred cccccccccchhhhhhhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
..+.+...||..|.+....||+|+..+
T Consensus 35 C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 35 CMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp TSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 455566889999999999999999987
No 113
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.11 E-value=0.88 Score=31.51 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=24.2
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...+.+...||..|.+....||+|+..+
T Consensus 39 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 39 ECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 3566677999999999999999999987
No 114
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=74.72 E-value=1.7 Score=31.95 Aligned_cols=29 Identities=28% Similarity=0.796 Sum_probs=23.1
Q ss_pred cccccCCCC--CCeeEeCCCCCCceEecccccc
Q 038708 254 RCYICKSKR--GCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 254 ~C~iC~~~~--G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
.|.+|+... +.+|.|.. |...||..|...
T Consensus 28 ~C~vC~~~~d~~~ll~CD~--C~~~yH~~Cl~P 58 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDE--CDMAFHIYCLDP 58 (77)
T ss_dssp SBTTTCCCSCGGGEEECTT--TCCEEETTTSSS
T ss_pred cCCccCCCCCCcceeEeCC--CCCccCcccCCC
Confidence 477787763 56889985 999999999863
No 115
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=74.70 E-value=1.2 Score=38.69 Aligned_cols=29 Identities=31% Similarity=0.827 Sum_probs=24.6
Q ss_pred ccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 253 KRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 253 ~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
..|.+|+.. |.+|-|.. |..+||..|...
T Consensus 8 ~~C~~C~~~-g~ll~Cd~--C~~~~H~~Cl~p 36 (207)
T 3u5n_A 8 DWCAVCQNG-GDLLCCEK--CPKVFHLTCHVP 36 (207)
T ss_dssp SSBTTTCCC-EEEEECSS--SSCEECTTTSSS
T ss_pred CCCCCCCCC-CceEEcCC--CCCccCCccCCC
Confidence 569999976 78898976 999999999743
No 116
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=74.09 E-value=0.8 Score=34.24 Aligned_cols=27 Identities=11% Similarity=-0.114 Sum_probs=22.9
Q ss_pred cccccccccchhhhhhhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
..+.+...||..|.+....||+|+..+
T Consensus 61 C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 61 CHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp TTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 445556889999999999999999987
No 117
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=73.74 E-value=0.98 Score=37.92 Aligned_cols=54 Identities=17% Similarity=0.519 Sum_probs=39.1
Q ss_pred ccccccccccccccccCCCCCCeEEcc--CCCcccccccccCCCC----CC-CCCCcEeCcccccc
Q 038708 133 EEEDDGILCAVCQSTDGDSKDPIVFCD--GCDLMVHATCYGNPLV----KE-IPDGDWFCAQCLAA 191 (331)
Q Consensus 133 ~~~~~~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~g~p~~----~~-ip~~~W~C~~C~~~ 191 (331)
+++.-+.+|.+|+.+ +.|+.|| .|...|-..|+...+. .+ +....|.|--|...
T Consensus 74 DeDG~~~yC~wC~~G-----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 74 DDDGYQSYCTICCGG-----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp CTTSSBSSCTTTSCC-----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred CCCCCcceeeEecCC-----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 334456799999975 7899999 7999999999864221 11 34567888888765
No 118
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=73.66 E-value=0.94 Score=34.14 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=25.7
Q ss_pred CccccccCCCC----CCeeEeCCCCCCceEeccccccC
Q 038708 252 EKRCYICKSKR----GCSVECSEPKCCLSFHVTCGLSE 285 (331)
Q Consensus 252 ~~~C~iC~~~~----G~~i~C~~~~C~~~fHv~CA~~~ 285 (331)
...|.+|+... +.+|.|.. |..+||..|.-..
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~--C~~~fH~~Cl~p~ 60 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDM--CNLAVHQECYGVP 60 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSS--SCCCCCHHHHTCS
T ss_pred CCcCCcCCCCCCCCCCCEEECCC--CCchhhcccCCCC
Confidence 36799999762 37899985 9999999998554
No 119
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=73.60 E-value=1.3 Score=30.76 Aligned_cols=27 Identities=11% Similarity=-0.064 Sum_probs=23.8
Q ss_pred cccccccccchhhhhhhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
..+.....||..|.+....||+|+..+
T Consensus 24 C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 24 CLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp TTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 456677999999999999999999998
No 120
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=72.76 E-value=2 Score=35.42 Aligned_cols=29 Identities=28% Similarity=0.665 Sum_probs=25.1
Q ss_pred CccccccCCCCCCeeEeCCCCCCceEeccccc
Q 038708 252 EKRCYICKSKRGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 252 ~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
...|.+|+.. |..|-|.. |.+.||..|..
T Consensus 63 ~d~C~vC~~G-G~LlcCD~--Cpr~Fh~~Cl~ 91 (142)
T 2lbm_A 63 DEQCRWCAEG-GNLICCDF--CHNAFCKKCIL 91 (142)
T ss_dssp BCSCSSSCCC-SSEEECSS--SCCEEEHHHHH
T ss_pred CCeecccCCC-CcEEeCCC--CCCeeeHhhcC
Confidence 3579999987 88888874 99999999985
No 121
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.64 E-value=0.39 Score=36.33 Aligned_cols=52 Identities=27% Similarity=0.601 Sum_probs=42.7
Q ss_pred ccccccccccc--CCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccc
Q 038708 138 GILCAVCQSTD--GDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 138 ~~~C~vC~~~~--~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~ 193 (331)
..+|.||++.- ..+++..+-|..|...+-..||- .+.-+|.-.|++|.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE----YErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE----YERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH----HHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHH----HHHhccCccccccCCccc
Confidence 35899999842 45778999999999999999996 567788889999987753
No 122
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=72.54 E-value=0.24 Score=34.58 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=29.7
Q ss_pred cccccccccccccCCCCCCeEE--ccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVF--CDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~--Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
++...|.||.... ++..++- |.+.-..||..|+..=+ . -.+.+.|+.|...
T Consensus 4 ~~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~-~--~~~~~~C~~C~~~ 56 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWL-T--ISRNTACQICGVV 56 (60)
T ss_dssp CSCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHH-H--HHTCSBCTTTCCB
T ss_pred CCCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHH-H--hCCCCccCCCCCe
Confidence 3446899999853 2233444 34455699999996321 1 1134566666654
No 123
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=71.49 E-value=1.4 Score=37.88 Aligned_cols=29 Identities=34% Similarity=0.915 Sum_probs=24.6
Q ss_pred ccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 253 KRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 253 ~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
..|.+|+.. |..+.|.. |...||..|...
T Consensus 3 ~~C~~C~~~-g~ll~Cd~--C~~~~H~~Cl~p 31 (189)
T 2ro1_A 3 TICRVCQKP-GDLVMCNQ--CEFCFHLDCHLP 31 (189)
T ss_dssp CCBTTTCCC-SSCCCCTT--TCCBCCSTTSTT
T ss_pred CcCccCCCC-CceeECCC--CCchhccccCCC
Confidence 469999977 78888975 999999999854
No 124
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=70.10 E-value=1.1 Score=34.74 Aligned_cols=27 Identities=19% Similarity=-0.020 Sum_probs=22.7
Q ss_pred cccccccccchhhhh-----hhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKR-----KYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~-----~~~~cPlc~~~f 65 (331)
+.+.+...||..|.+ ....||+|+..|
T Consensus 61 C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 61 CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 566777999999984 456999999998
No 125
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=67.59 E-value=3.5 Score=27.06 Aligned_cols=47 Identities=28% Similarity=0.503 Sum_probs=29.0
Q ss_pred cccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLA 190 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~ 190 (331)
...|.||...- .+++..+.-..|+-.||..|+..-+ . ....||.|+.
T Consensus 5 ~~~C~IC~~~~-~~~~~~~~~~~C~H~f~~~Ci~~w~-~----~~~~CP~Cr~ 51 (55)
T 1iym_A 5 GVECAVCLAEL-EDGEEARFLPRCGHGFHAECVDMWL-G----SHSTCPLCRL 51 (55)
T ss_dssp SCCCTTTCCCC-CTTSCCEECSSSCCEECTTHHHHTT-T----TCCSCSSSCC
T ss_pred CCcCccCCccc-cCCCceEECCCCCCcccHHHHHHHH-H----cCCcCcCCCC
Confidence 45799999753 2334455555788889999986422 1 1235666654
No 126
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=67.46 E-value=2.7 Score=37.30 Aligned_cols=28 Identities=29% Similarity=0.791 Sum_probs=21.3
Q ss_pred cccccCCC--CCCeeEeCCCCCCceEeccccc
Q 038708 254 RCYICKSK--RGCSVECSEPKCCLSFHVTCGL 283 (331)
Q Consensus 254 ~C~iC~~~--~G~~i~C~~~~C~~~fHv~CA~ 283 (331)
.|.+|+.. .|.+|.|.. |...||..|.-
T Consensus 176 ~C~vC~~~~~~~~lL~CD~--C~~~yH~~CL~ 205 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDE--CDMAFHIYCLD 205 (226)
T ss_dssp SCSSSCCCCC--CCEECSS--SCCEECSCC--
T ss_pred CCcCCCCCCCCCCeEEcCC--CCcceeCccCC
Confidence 58999875 478899985 99999999985
No 127
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.39 E-value=1.7 Score=30.62 Aligned_cols=28 Identities=11% Similarity=-0.184 Sum_probs=23.8
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...+.+...||..|.+....||+|+..+
T Consensus 33 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 33 ECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp SSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 3455666889999999889999999998
No 128
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=66.90 E-value=2.7 Score=25.42 Aligned_cols=26 Identities=27% Similarity=0.766 Sum_probs=18.4
Q ss_pred CCcEeCcccccccccccccccccccCC
Q 038708 180 DGDWFCAQCLAANDENRAFSCCLCPVG 206 (331)
Q Consensus 180 ~~~W~C~~C~~~~~~~~~~~C~lC~~~ 206 (331)
.|||.|+.|.+.. -.....|.-|+..
T Consensus 3 ~gDW~C~~C~~~N-fa~r~~C~~C~~p 28 (32)
T 2lk0_A 3 FEDWLCNKCCLNN-FRKRLKCFRCGAD 28 (32)
T ss_dssp CSEEECTTTCCEE-ETTCCBCTTTCCB
T ss_pred CCCCCcCcCcCCc-ChhcceecCCCCc
Confidence 3899999997762 2356678888643
No 129
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.90 E-value=2.1 Score=31.51 Aligned_cols=25 Identities=8% Similarity=-0.117 Sum_probs=21.4
Q ss_pred cccccccchhhhhhh--cCCCCCCCCC
Q 038708 41 STAKNLCLPAKKRKY--CFYPPPLPSS 65 (331)
Q Consensus 41 ~~~~~~ci~~w~~~~--~~cPlc~~~f 65 (331)
+.....||..|.+.. ..||+|+..|
T Consensus 42 h~fH~~Cl~~Wl~~~~~~~CplCr~~~ 68 (80)
T 2d8s_A 42 HFVHQACLQQWIKSSDTRCCELCKYEF 68 (80)
T ss_dssp CCEETTHHHHHHHHHCCSBCSSSCCBC
T ss_pred CeeCHHHHHHHHhhCCCCCCCCCCCee
Confidence 556688999998876 4999999999
No 130
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=65.50 E-value=1 Score=33.75 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=29.1
Q ss_pred ccccccCCC-CCCeeEeCCCCCCceEeccccccCCceE
Q 038708 253 KRCYICKSK-RGCSVECSEPKCCLSFHVTCGLSEDLCI 289 (331)
Q Consensus 253 ~~C~iC~~~-~G~~i~C~~~~C~~~fHv~CA~~~g~~~ 289 (331)
..|.||..- .+..+.|.. |.+.||..|....|+.-
T Consensus 16 ~~C~VC~~~t~~~l~pCRv--C~RvfH~~CL~r~gy~~ 51 (89)
T 1wil_A 16 EMCDVCEVWTAESLFPCRV--CTRVFHDGCLRRMGYIQ 51 (89)
T ss_dssp CCCTTTCCCCSSCCSSCSS--SSSCCCHHHHHHHTSCC
T ss_pred cccCccccccccceecccc--ccccccHhhcccccccc
Confidence 579999964 477889987 99999999998877643
No 131
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.60 E-value=2 Score=31.30 Aligned_cols=28 Identities=7% Similarity=-0.166 Sum_probs=24.4
Q ss_pred ccccccccccchhhhhhh--cCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKY--CFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~--~~cPlc~~~f 65 (331)
..+..+...||..|-+.. ++||+|+..+
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SSCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred CCCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 567778899999998877 8999999988
No 132
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=62.90 E-value=3.9 Score=34.87 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=27.5
Q ss_pred ccccCCCC---CCeeEeCCCCCCceEeccccccCCceEEeecCCCCCceEEEcCCCc
Q 038708 255 CYICKSKR---GCSVECSEPKCCLSFHVTCGLSEDLCIEYREGKKGGAVVAGFCKDH 308 (331)
Q Consensus 255 C~iC~~~~---G~~i~C~~~~C~~~fHv~CA~~~g~~~~~~~~~~~~~~~~~~C~~H 308 (331)
-+||++.+ -.+++|+. |.++||..|.......+.. ....|.+.|..=
T Consensus 7 yCYCG~~~~~~~~mLqC~~--C~qWFH~~Cl~~~~~~~lp-----~~~fY~F~C~~C 56 (177)
T 3rsn_A 7 SVDEENGRQLGEVELQCGI--CTKWFTADTFGIDTSSCLP-----FMTNYSFHCNVC 56 (177)
T ss_dssp ----CTTCCTTSCEEECTT--TCCEEEGGGGTCCCTTCCT-----TCCSEEEECTTT
T ss_pred EEEcCCCCCCCceeEeecc--ccceecHHHhcccccCccc-----cceeEEEEcccc
Confidence 45888863 35899987 9999999999643311110 113566777763
No 133
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=62.26 E-value=5.6 Score=24.16 Aligned_cols=27 Identities=30% Similarity=0.721 Sum_probs=19.1
Q ss_pred CCCcEeCcccccccccccccccccccCC
Q 038708 179 PDGDWFCAQCLAANDENRAFSCCLCPVG 206 (331)
Q Consensus 179 p~~~W~C~~C~~~~~~~~~~~C~lC~~~ 206 (331)
..|||.|+.|.+..- .....|.-|...
T Consensus 3 ~~gDW~C~~C~~~Nf-a~R~~C~~C~~p 29 (33)
T 2k1p_A 3 SANDWQCKTCSNVNW-ARRSECNMCNTP 29 (33)
T ss_dssp SSSSCBCSSSCCBCC-TTCSBCSSSCCB
T ss_pred CCCCcccCCCCCccc-cccccccccCCc
Confidence 359999999987632 356678888643
No 134
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=61.33 E-value=4.1 Score=32.96 Aligned_cols=30 Identities=27% Similarity=0.647 Sum_probs=25.2
Q ss_pred CccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 252 EKRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 252 ~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
...|.+|+.. |..+-|+ .|.+.||..|...
T Consensus 57 ~~~C~vC~dG-G~LlcCd--~Cpr~Fc~~Cl~~ 86 (129)
T 3ql9_A 57 DEQCRWCAEG-GNLICCD--FCHNAFCKKCILR 86 (129)
T ss_dssp BSSCTTTCCC-SEEEECS--SSSCEEEHHHHHH
T ss_pred CCcCeecCCC-CeeEecC--CCchhhhHHHhCC
Confidence 4579999976 8888786 5999999999964
No 135
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.13 E-value=1.6 Score=30.80 Aligned_cols=27 Identities=7% Similarity=-0.183 Sum_probs=23.4
Q ss_pred cccccccccchhhhhhhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
..+.+...||..|.+....||+|+..+
T Consensus 33 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 33 CKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp TTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 456666899999999889999999998
No 136
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.78 E-value=3.6 Score=29.78 Aligned_cols=27 Identities=15% Similarity=-0.054 Sum_probs=22.6
Q ss_pred cccccccccchhhhhhh---cCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKY---CFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~---~~cPlc~~~f 65 (331)
..+.....||..|.+.. ..||+|+..+
T Consensus 37 CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 37 CGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp SSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred CCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 45566689999998875 7999999987
No 137
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=59.79 E-value=5.4 Score=30.65 Aligned_cols=47 Identities=30% Similarity=0.400 Sum_probs=29.2
Q ss_pred cccccCCchhHHHHHHHHHHHHHhhhhccccccccccccccccccchhhhhhhcCCC
Q 038708 3 TKFEALPPLKRFRLMQQQREEQEGGQQHHQQKIQESDESTAKNLCLPAKKRKYCFYP 59 (331)
Q Consensus 3 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ci~~w~~~~~~cP 59 (331)
..|++|||..|-+.||+...+=++. .+++.. ...-|+....++...|
T Consensus 6 ~d~s~LPpeqRkkkL~~Ki~el~~e---i~ke~~-------~regl~Km~~vY~~nP 52 (98)
T 2ke4_A 6 EDFSHLPPEQQRKRLQQQLEERSRE---LQKEVD-------QREALKKMKDVYEKTP 52 (98)
T ss_dssp SCSSSSCHHHHHHHHHHHHHHHHHH---HHHHHH-------HHTHHHHHHHHHHHCG
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHH---HHHHHH-------HHHHHHHHHHHHHcCC
Confidence 4699999999999998866554432 111110 1122566677777776
No 138
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=58.83 E-value=3.3 Score=39.20 Aligned_cols=37 Identities=32% Similarity=0.765 Sum_probs=27.1
Q ss_pred ccccccccccccccCC-CCCCeEEcc--CCCccccccccc
Q 038708 135 EDDGILCAVCQSTDGD-SKDPIVFCD--GCDLMVHATCYG 171 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~-~~~~ll~Cd--~C~~~~H~~C~g 171 (331)
++....|.||.....+ ..-.-..|+ .|+-.||..|+.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~ 344 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLE 344 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGH
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHH
Confidence 4456789999986433 222335798 799999999995
No 139
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=58.48 E-value=3.7 Score=29.10 Aligned_cols=27 Identities=7% Similarity=0.018 Sum_probs=22.7
Q ss_pred cccccccccchhhhhhh--cCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKY--CFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~--~~cPlc~~~f 65 (331)
..+.+...||..|.+.. ..||+|+..+
T Consensus 34 CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 34 CGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp SCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 45677799999998865 6999999987
No 140
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.41 E-value=2.6 Score=30.40 Aligned_cols=27 Identities=7% Similarity=-0.261 Sum_probs=23.2
Q ss_pred cccccccccchhhhhhhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
..+.....||..|.+....||+|+..+
T Consensus 33 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 33 CRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp TSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 455666899999999889999999997
No 141
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=56.22 E-value=2.2 Score=40.78 Aligned_cols=54 Identities=19% Similarity=0.585 Sum_probs=39.5
Q ss_pred cccccccccccccccCCCCCCeEEcc--CCCcccccccccCCCC----CC-CCCCcEeCccccccc
Q 038708 134 EEDDGILCAVCQSTDGDSKDPIVFCD--GCDLMVHATCYGNPLV----KE-IPDGDWFCAQCLAAN 192 (331)
Q Consensus 134 ~~~~~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~g~p~~----~~-ip~~~W~C~~C~~~~ 192 (331)
++.-+.+|.+|+.+ +.+++|| .|...|-..|+...+. .. .....|.|=-|....
T Consensus 89 ~DG~~~yCr~C~~G-----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 89 DDGYQSYCSICCSG-----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SSSSBCSCTTTCCC-----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CCCCcccceEcCCC-----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 34456799999975 6799999 8999999999864321 11 123679998888763
No 142
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=55.55 E-value=2.9 Score=33.63 Aligned_cols=28 Identities=7% Similarity=-0.011 Sum_probs=23.6
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
.+.+.+...||..|.+....||+|+..+
T Consensus 70 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 70 NCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp TTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 3455666889999999999999999887
No 143
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.49 E-value=4.4 Score=29.40 Aligned_cols=30 Identities=30% Similarity=0.640 Sum_probs=24.7
Q ss_pred ccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 253 KRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 253 ~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
..|.||+...-.-+.|. .|...||..|...
T Consensus 16 ~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCE--TCGIRMHLPCVAK 45 (74)
T ss_dssp CBCSSSCCBCSSSEECS--SSCCEECHHHHHH
T ss_pred CcCcchhhHcccCCccC--CCCchhhHHHHHH
Confidence 57999998765567887 6999999999853
No 144
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=55.26 E-value=5.9 Score=25.83 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=26.3
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.+.|.+|+..=-.-..+-+.|..|+..+|..|..
T Consensus 11 pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~ 44 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 44 (50)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred CCCcCCCCceeeccCCccCEeCCCCCeECHHHhh
Confidence 4689999874211235789999999999999986
No 145
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=54.82 E-value=7.8 Score=28.07 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=26.4
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.++|.+|...=-.-..+-+.|..|...+|..|..
T Consensus 34 pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~ 67 (77)
T 2enn_A 34 PTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCID 67 (77)
T ss_dssp CEECSSSCCEECCTTCCEEECSSSCCEEESGGGS
T ss_pred CcCccccChhhccccccccCcCCCCCcCCHhHHh
Confidence 4789999874211235778999999999999986
No 146
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.54 E-value=4.8 Score=27.54 Aligned_cols=28 Identities=14% Similarity=-0.075 Sum_probs=22.1
Q ss_pred ccccccccccchhh-hhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAK-KRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w-~~~~~~cPlc~~~f 65 (331)
..-+.....||..| .+....||+|+..+
T Consensus 25 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 25 VCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp TTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 35666778999999 44456899999998
No 147
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.49 E-value=11 Score=28.12 Aligned_cols=37 Identities=24% Similarity=0.704 Sum_probs=28.6
Q ss_pred CCCeEEccCCCccc-ccccccCCCCCCCCCCcEeCccccccc
Q 038708 152 KDPIVFCDGCDLMV-HATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 152 ~~~ll~Cd~C~~~~-H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
.-.|++|..|+..- |..|.. +. -...+|.|..|....
T Consensus 43 ~W~L~lC~~Cgs~gtH~~Cs~---l~-~~~~~weC~~C~~v~ 80 (85)
T 1weq_A 43 RWRLILCATCGSHGTHRDCSS---LR-PNSKKWECNECLPAS 80 (85)
T ss_dssp TTBCEECSSSCCCEECSGGGT---CC-TTCSCCCCTTTSCCS
T ss_pred CEEEEeCcccCCchhHHHHhC---Cc-CCCCCEECCcCcccc
Confidence 46799999998754 999997 23 244789999998753
No 148
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=54.25 E-value=3.8 Score=31.00 Aligned_cols=28 Identities=7% Similarity=-0.095 Sum_probs=23.7
Q ss_pred ccccccccccchhhhhhh-cCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKY-CFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~-~~cPlc~~~f 65 (331)
...+.+...||..|-+.. ..||+|+..+
T Consensus 40 ~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 40 HCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68 (100)
T ss_dssp TTCCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCChhhHHHHHHHHHHCcCCCCCCCCcC
Confidence 346667789999998887 7999999998
No 149
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=53.50 E-value=3.5 Score=40.75 Aligned_cols=27 Identities=30% Similarity=0.726 Sum_probs=22.9
Q ss_pred ccccccCCC---CCCeeEeCCCCCCceEecccc
Q 038708 253 KRCYICKSK---RGCSVECSEPKCCLSFHVTCG 282 (331)
Q Consensus 253 ~~C~iC~~~---~G~~i~C~~~~C~~~fHv~CA 282 (331)
..| +|+.. .|.||+|.. |..+||..|.
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~--C~~WfH~~Cv 67 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDI--CKDWFHGSCV 67 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTT--TCCEEEHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccC--CCCceeeeec
Confidence 345 99985 588999986 9999999998
No 150
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.45 E-value=3.8 Score=28.59 Aligned_cols=27 Identities=11% Similarity=-0.019 Sum_probs=21.4
Q ss_pred cccccccccchhhhh---hhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKR---KYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~---~~~~cPlc~~~f 65 (331)
..+.....||..|.+ ....||+|+..+
T Consensus 38 CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 38 CGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp TCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred CCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 445566889999986 456899999998
No 151
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.94 E-value=0.92 Score=31.78 Aligned_cols=27 Identities=7% Similarity=-0.096 Sum_probs=23.0
Q ss_pred cccccccccchhhhhhhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
..+.....||..|.+....||+|+..+
T Consensus 32 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 32 CAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp TTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 455666889999999889999999988
No 152
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=52.48 E-value=3.4 Score=40.36 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=22.8
Q ss_pred cccccCCC---CCCeeEeCCCCCCceEecccc
Q 038708 254 RCYICKSK---RGCSVECSEPKCCLSFHVTCG 282 (331)
Q Consensus 254 ~C~iC~~~---~G~~i~C~~~~C~~~fHv~CA 282 (331)
..++|+.. .|.+|+|.. |..+||..|.
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~--C~~WfH~~CV 35 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDM--CQDWFHGSCV 35 (447)
T ss_dssp EETTTTEECCTTSCEEECTT--TCCEEEHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCC--CCcccccccC
Confidence 35588875 488999985 9999999998
No 153
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=51.70 E-value=9.8 Score=26.43 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=26.1
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.+.|.+|+..=-.-..+-+.|..|...+|..|..
T Consensus 23 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 56 (65)
T 2enz_A 23 PTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQT 56 (65)
T ss_dssp CCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTT
T ss_pred CcCchhcChhheecCCcccccCCCCCccCHhHHh
Confidence 3689999874211235778999999999999986
No 154
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.30 E-value=10 Score=27.79 Aligned_cols=34 Identities=21% Similarity=0.511 Sum_probs=26.3
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.++|.+|+..=-.-..+-+.|..|...+|..|..
T Consensus 28 pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~ 61 (83)
T 2yuu_A 28 PTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCID 61 (83)
T ss_dssp CCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGG
T ss_pred CcChhhcChhhccccccccccCCcCCeeChhhhh
Confidence 4689999874211135788999999999999996
No 155
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.16 E-value=9.3 Score=27.87 Aligned_cols=36 Identities=25% Similarity=0.731 Sum_probs=22.4
Q ss_pred cccccccccccccCCCCCCeEE---ccCCCcccccccccC
Q 038708 136 DDGILCAVCQSTDGDSKDPIVF---CDGCDLMVHATCYGN 172 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~---Cd~C~~~~H~~C~g~ 172 (331)
.+...|.||.... ++++.++. |.+..-.||..|+..
T Consensus 13 ~~~~~C~IC~~~~-~~~~~l~~pC~C~Gs~h~fH~~Cl~~ 51 (80)
T 2d8s_A 13 SSQDICRICHCEG-DDESPLITPCHCTGSLHFVHQACLQQ 51 (80)
T ss_dssp TTSCCCSSSCCCC-CSSSCEECSSSCCSSSCCEETTHHHH
T ss_pred CCCCCCeEcCccc-cCCCeeEeccccCCcCCeeCHHHHHH
Confidence 3446799999743 23455542 222348899999963
No 156
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=51.09 E-value=5.9 Score=29.69 Aligned_cols=32 Identities=31% Similarity=0.611 Sum_probs=26.9
Q ss_pred ccccccccccCCCCCCeEEccCCCcccccccccCC
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNP 173 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p 173 (331)
..|.+|... ..+....|..|+..+|..|...|
T Consensus 48 ~~C~~C~~~---~~~~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 48 YTCDKCEEE---GTIWSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp CCCTTTSCC---CCSCEEECTTTCCCCCHHHHHCS
T ss_pred eEeCCCCCc---CCCcEEEcCCCCCeEcHHhcCCC
Confidence 479999985 34788999999999999998654
No 157
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=50.48 E-value=8.3 Score=25.33 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=25.3
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.+.|.+|+..= . +-+.|..|+..+|..|..
T Consensus 14 pt~C~~C~~~l-~---qG~~C~~C~~~~H~~C~~ 43 (52)
T 1faq_A 14 LAFCDICQKFL-L---NGFRCQTCGYKFHEHCST 43 (52)
T ss_dssp CEECTTSSSEE-C---SEEECTTTTCCBCSTTSS
T ss_pred CcCCCCccccc-c---cCCEeCCCCCeEChhHHh
Confidence 46899998742 2 788999999999999986
No 158
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=50.23 E-value=5.2 Score=28.44 Aligned_cols=11 Identities=45% Similarity=1.331 Sum_probs=7.8
Q ss_pred CcEeCcccccc
Q 038708 181 GDWFCAQCLAA 191 (331)
Q Consensus 181 ~~W~C~~C~~~ 191 (331)
++.||.+|...
T Consensus 27 gDLYC~rC~rE 37 (67)
T 2d8v_A 27 GDLYCARCFRE 37 (67)
T ss_dssp SEEECSSHHHH
T ss_pred CceehHHHHHH
Confidence 46778887766
No 159
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=49.87 E-value=12 Score=24.54 Aligned_cols=17 Identities=35% Similarity=1.075 Sum_probs=12.9
Q ss_pred CCCCCCcEeCcccccccc
Q 038708 176 KEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 176 ~~ip~~~W~C~~C~~~~~ 193 (331)
.++| .+|.||.|-..++
T Consensus 25 ~~lP-~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 25 DQLP-DDWCCPVCGVSKD 41 (46)
T ss_dssp GGSC-TTCBCTTTCCBGG
T ss_pred hhCC-CCCcCcCCCCcHH
Confidence 4566 5699999988754
No 160
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.81 E-value=8.7 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=22.8
Q ss_pred cccccccccchhhhhh------hcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRK------YCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~------~~~cPlc~~~f 65 (331)
..+.....||..|.+. ...||+|+..+
T Consensus 37 CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 37 CGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 4566778999999877 67999999998
No 161
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=49.64 E-value=4.2 Score=30.44 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=23.9
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...+.+...||..|.+....||.|+..+
T Consensus 40 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 40 QCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp TTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 3556667889999999889999999988
No 162
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.56 E-value=6.5 Score=26.91 Aligned_cols=27 Identities=11% Similarity=-0.135 Sum_probs=21.7
Q ss_pred cccccccccchhhhh-hhcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKR-KYCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~-~~~~cPlc~~~f 65 (331)
..+.....||..|.+ ....||+|+..+
T Consensus 33 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 33 CGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp SSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred CCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 456666899999985 456899999987
No 163
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=48.26 E-value=4.8 Score=31.31 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=24.9
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...+.+...||..|.+....||+|+..+
T Consensus 96 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 96 ECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp TTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 4567788999999999999999999998
No 164
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=47.76 E-value=8.4 Score=26.76 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=26.1
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.+.|.+|+..=..-..+-+.|..|+..+|..|..
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 53 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCRE 53 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHT
T ss_pred CCcccccChhhhccCceeeECCCCCCeEchhHhh
Confidence 4689999874211235778999999999999986
No 165
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.28 E-value=11 Score=26.60 Aligned_cols=27 Identities=7% Similarity=-0.060 Sum_probs=22.9
Q ss_pred cccccccccchhhhhh------hcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRK------YCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~------~~~cPlc~~~f 65 (331)
..+.....||..|.+. ...||+|+..+
T Consensus 37 CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 37 CNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 5566778999999887 67999999998
No 166
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.06 E-value=15 Score=27.02 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=26.3
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.+.|.+|+..=-.-..+-+.|..|...+|..|..
T Consensus 28 pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~ 61 (85)
T 2eli_A 28 PTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVI 61 (85)
T ss_dssp CCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CcCCcccCccccccccCCCcCCCcCCccCHhHHh
Confidence 3689999874211235788999999999999986
No 167
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=43.99 E-value=11 Score=26.34 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=25.9
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.+.|.+|...=-.-..+-+.|..|...+|..|..
T Consensus 24 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~ 57 (66)
T 1y8f_A 24 PTYCYECEGLLWGIARQGMRCTECGVKCHEKCQD 57 (66)
T ss_dssp CCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHH
T ss_pred CcChhhcChhhcccCcceeEcCCCCCeeCHHHHh
Confidence 4689999874211124678999999999999986
No 168
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=43.63 E-value=7.1 Score=27.62 Aligned_cols=27 Identities=7% Similarity=-0.095 Sum_probs=22.6
Q ss_pred cccccccccchhhhhh-hcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRK-YCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~-~~~cPlc~~~f 65 (331)
.-+.....||..|.+. ...||+|+..+
T Consensus 26 CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 26 TGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp TTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 4566668999999987 67999999987
No 169
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=43.28 E-value=4.6 Score=38.46 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=6.9
Q ss_pred cccCCchhHHHHHHH
Q 038708 5 FEALPPLKRFRLMQQ 19 (331)
Q Consensus 5 ~~~~~~~~~~~~~~q 19 (331)
+.++.-++.+...||
T Consensus 368 ~~~i~~~~~~~~~~~ 382 (449)
T 3iot_A 368 AAAMATLEKLMKAFE 382 (449)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHH
Confidence 444444555544433
No 170
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=42.24 E-value=6 Score=30.11 Aligned_cols=28 Identities=7% Similarity=-0.077 Sum_probs=23.9
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...+.+...||..|.+....||+|+..+
T Consensus 33 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 33 ECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp TTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred CCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 3556667899999998889999999998
No 171
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.57 E-value=23 Score=23.87 Aligned_cols=29 Identities=34% Similarity=0.791 Sum_probs=22.5
Q ss_pred CCCCcEeCcccccccccccccccccccCCC
Q 038708 178 IPDGDWFCAQCLAANDENRAFSCCLCPVGG 207 (331)
Q Consensus 178 ip~~~W~C~~C~~~~~~~~~~~C~lC~~~g 207 (331)
.+++.|.|+.|.+... .....|..|....
T Consensus 7 ~~~~~W~C~~CT~~N~-~~~~~C~~C~~pr 35 (53)
T 2d9g_A 7 GDEGYWDCSVCTFRNS-AEAFKCMMCDVRK 35 (53)
T ss_dssp SCCCCEECSSSCCEEC-SSCSSCSSSCCCC
T ss_pred CCCCCcCCCCCccCCC-CCCCccCCCCCcC
Confidence 4567899999999843 4677899997653
No 172
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=40.43 E-value=13 Score=30.77 Aligned_cols=52 Identities=23% Similarity=0.497 Sum_probs=39.6
Q ss_pred ccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 137 DGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 137 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
+...|.+|..+-+--.+.-..|..|...|-..|-.. .-++..|+|..|....
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~----~~~~~~W~C~vC~k~r 118 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA----HPEEQGWLCDPCHLAR 118 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC----CSSSSSCEEHHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccc----cCCCCcEeeHHHHHHH
Confidence 457899999864334466788999999999999742 2356789999998874
No 173
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=39.99 E-value=6.9 Score=27.61 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=22.1
Q ss_pred cccccccccchhhhhh-------hcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRK-------YCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~-------~~~cPlc~~~f 65 (331)
..+.....||..|.+. ...||+|+..+
T Consensus 30 CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 30 CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 4566678899999876 67999999998
No 174
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.91 E-value=12 Score=26.90 Aligned_cols=48 Identities=25% Similarity=0.495 Sum_probs=27.0
Q ss_pred ccccccccccCC----------CCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 139 ILCAVCQSTDGD----------SKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 139 ~~C~vC~~~~~~----------~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
..|.||...-.+ .++..+.-..|+=.||..|+..=+ .. .-.||.|+..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-~~----~~~CP~CR~~ 73 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV-KQ----NNRCPLCQQD 73 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT-TT----CCBCTTTCCB
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH-Hh----CCCCCCcCCC
Confidence 457777764311 223343444789999999986432 11 1256666554
No 175
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=39.74 E-value=9.4 Score=28.56 Aligned_cols=31 Identities=32% Similarity=0.736 Sum_probs=25.7
Q ss_pred ccccccCCCC-CCeeEeCCCCCCceEeccccccC
Q 038708 253 KRCYICKSKR-GCSVECSEPKCCLSFHVTCGLSE 285 (331)
Q Consensus 253 ~~C~iC~~~~-G~~i~C~~~~C~~~fHv~CA~~~ 285 (331)
..|.+|+... |....|.. |.-.+|+.||...
T Consensus 48 ~~C~~C~~~~~~~~Y~C~~--C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 48 YTCDKCEEEGTIWSYHCDE--CDFDLHAKCALNE 79 (89)
T ss_dssp CCCTTTSCCCCSCEEECTT--TCCCCCHHHHHCS
T ss_pred eEeCCCCCcCCCcEEEcCC--CCCeEcHHhcCCC
Confidence 5799999863 66789975 9999999999654
No 176
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=38.70 E-value=8.3 Score=30.08 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=21.4
Q ss_pred cccccccccchhhhhhhc-CCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYC-FYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~-~cPlc~~~f 65 (331)
+-+.+...||..|.+... .||+|+..+
T Consensus 70 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 70 CQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp TSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 444556889999987654 999999998
No 177
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.34 E-value=25 Score=28.33 Aligned_cols=55 Identities=24% Similarity=0.520 Sum_probs=39.9
Q ss_pred ccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 137 DGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 137 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
+...|.+|..+-+--.+.-..|..|...|-..|-+... ..-....|+|..|....
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~-~~~~~~~W~C~vC~k~r 108 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS-NNRPHPVWLCKICLEQR 108 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC-CSSSSCCEEEHHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccC-CCCCccceechhhHHHH
Confidence 34679999987543446668899999999999976421 12234579999998874
No 178
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=38.09 E-value=19 Score=25.74 Aligned_cols=32 Identities=19% Similarity=0.531 Sum_probs=26.2
Q ss_pred ccccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 137 DGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 137 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
..+.|..|+..= ..+-+.|..|+..+|..|..
T Consensus 34 ~pt~C~~C~~~l---~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 34 GPGWCDLCGREV---LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp SCCBCTTTSSBC---SSCCEECTTSSCEECTGGGG
T ss_pred CCcchhhhhHHH---HhCcCccCCCCCeechhhhc
Confidence 346899998752 46678899999999999986
No 179
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=36.46 E-value=23 Score=20.74 Aligned_cols=25 Identities=24% Similarity=0.673 Sum_probs=18.6
Q ss_pred CcEeCcccccccccccccccccccCC
Q 038708 181 GDWFCAQCLAANDENRAFSCCLCPVG 206 (331)
Q Consensus 181 ~~W~C~~C~~~~~~~~~~~C~lC~~~ 206 (331)
..|.|+.|.+... .....|.+|...
T Consensus 5 ~~W~C~~CTf~N~-~~~~~Ce~C~~~ 29 (31)
T 1nj3_A 5 AMWACQHCTFMNQ-PGTGHCEMCSLP 29 (31)
T ss_dssp CCEECSSSCCEEC-SSCSSCSSSCCC
T ss_pred ccccCCcccccCC-CCCCccCCcCCC
Confidence 5799999998843 356788888643
No 180
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=36.31 E-value=16 Score=27.59 Aligned_cols=28 Identities=7% Similarity=-0.050 Sum_probs=22.5
Q ss_pred ccccccccccchhhhhhhc---CCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYC---FYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~---~cPlc~~~f 65 (331)
...+.....||..|.+... .||.|+..+
T Consensus 38 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 38 KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (112)
T ss_dssp TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcC
Confidence 3556667899999988654 899999987
No 181
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=36.21 E-value=11 Score=27.55 Aligned_cols=27 Identities=7% Similarity=0.018 Sum_probs=21.5
Q ss_pred cccccccccchhhhhhh--cCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKY--CFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~--~~cPlc~~~f 65 (331)
..+.+...||..|.... ..||+|+..+
T Consensus 32 CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 32 CGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 45667788999997643 5999999987
No 182
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=35.79 E-value=16 Score=27.09 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=25.2
Q ss_pred cccccccccc-CCCCCCeEEccCCCccccccccc
Q 038708 139 ILCAVCQSTD-GDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 139 ~~C~vC~~~~-~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
..|.||...= +...-.-+.|--|...||..|+.
T Consensus 39 s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~ 72 (84)
T 1r79_A 39 AKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE 72 (84)
T ss_dssp CBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred CEeCCCCCEeCCccCCCCCCCcccChhHHHHHHH
Confidence 5899998752 22333567899999999999985
No 183
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=35.58 E-value=18 Score=24.75 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=22.5
Q ss_pred ccccccccccccccCCCCCCeEEccCCCcccccccccC
Q 038708 135 EDDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGN 172 (331)
Q Consensus 135 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~ 172 (331)
......|.||...-. . +..+..-.|+-.||..|+..
T Consensus 11 ~~~~~~C~IC~~~~~-~-~~~~~~~~C~H~fc~~Ci~~ 46 (69)
T 2kiz_A 11 EDTEEKCTICLSILE-E-GEDVRRLPCMHLFHQVCVDQ 46 (69)
T ss_dssp TTCCCSBTTTTBCCC-S-SSCEEECTTSCEEEHHHHHH
T ss_pred CCCCCCCeeCCcccc-C-CCcEEEeCCCCHHHHHHHHH
Confidence 445568999987421 1 22233446888888888853
No 184
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=35.18 E-value=18 Score=25.06 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=25.9
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.+.|.+|+..- .-..+.+.|..|...+|..|-.
T Consensus 19 ~~~C~~Cg~~i-~~gkq~~kC~dC~~~cH~~C~~ 51 (61)
T 4b6d_A 19 PESCVPCGKRI-KFGKLSLKCRDCRVVSHPECRD 51 (61)
T ss_dssp CEECTTTCCEE-CTTCEEEEESSSSCEECGGGGG
T ss_pred CcccccccCEE-EEeeEeeECCCCCCeEchhHhh
Confidence 36899997642 1235789999999999999975
No 185
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=34.74 E-value=14 Score=32.77 Aligned_cols=32 Identities=22% Similarity=0.544 Sum_probs=25.5
Q ss_pred ccccccccccccCCCCCCeEEccCCCcccccccccC
Q 038708 137 DGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGN 172 (331)
Q Consensus 137 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~ 172 (331)
....|.+|..-- -.-..|..|+..+|..|+.-
T Consensus 179 ~i~~C~iC~~iv----~~g~~C~~C~~~~H~~C~~~ 210 (238)
T 3nw0_A 179 AVKICNICHSLL----IQGQSCETCGIRMHLPCVAK 210 (238)
T ss_dssp TCCBCTTTCSBC----SSCEECSSSCCEECHHHHHH
T ss_pred CCCcCcchhhHH----hCCcccCccChHHHHHHHHH
Confidence 356799999853 23478999999999999963
No 186
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=34.67 E-value=20 Score=23.29 Aligned_cols=28 Identities=39% Similarity=0.847 Sum_probs=19.7
Q ss_pred CCCCcEeCc--ccccccccccccccccccCC
Q 038708 178 IPDGDWFCA--QCLAANDENRAFSCCLCPVG 206 (331)
Q Consensus 178 ip~~~W~C~--~C~~~~~~~~~~~C~lC~~~ 206 (331)
.-.|||.|+ .|.+..- .....|.-|...
T Consensus 10 ~~~GDW~C~~~~C~~~Nf-a~R~~C~~C~~p 39 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNVNF-ARRTSCDRCGRE 39 (45)
T ss_dssp SCSSSCBCSSTTTCCBCC-SSCSBCSSSCCB
T ss_pred CCCCCcCCCCCCCCCEEc-cccccccccCCc
Confidence 346999999 8987632 356678888643
No 187
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=34.64 E-value=11 Score=29.23 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=22.5
Q ss_pred cccccccccchhhhhhhc-CCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRKYC-FYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~~~-~cPlc~~~f 65 (331)
..+.....||..|.+... .||+|+..+
T Consensus 36 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 63 (118)
T 3hct_A 36 CGHRFCKACIIKSIRDAGHKCPVDNEIL 63 (118)
T ss_dssp TSCEEEHHHHHHHHHHHCSBCTTTCCBC
T ss_pred cCChhhHHHHHHHHhhCCCCCCCCCCCc
Confidence 455666889999988876 999999887
No 188
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=33.23 E-value=11 Score=27.30 Aligned_cols=52 Identities=17% Similarity=0.441 Sum_probs=26.0
Q ss_pred cccccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAAN 192 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~ 192 (331)
.++..|.||...-...+-.++-| .|+-.++..|+..- ...+...||.|+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~----~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRI----RTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHH----TTSSCSBCTTTCCBC
T ss_pred ccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHH----HhcCCCCCCCCCCcc
Confidence 34467999998431111112212 36555556665421 112445677776653
No 189
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=32.85 E-value=15 Score=32.51 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=26.1
Q ss_pred CccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 252 EKRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 252 ~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
...|.+|+.-...-+.|.. |...||..|...
T Consensus 180 i~~C~iC~~iv~~g~~C~~--C~~~~H~~C~~~ 210 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCET--CGIRMHLPCVAK 210 (238)
T ss_dssp CCBCTTTCSBCSSCEECSS--SCCEECHHHHHH
T ss_pred CCcCcchhhHHhCCcccCc--cChHHHHHHHHH
Confidence 4689999998766689976 999999999944
No 190
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=32.84 E-value=11 Score=38.58 Aligned_cols=13 Identities=15% Similarity=0.043 Sum_probs=5.8
Q ss_pred chhHHHHHHHHHH
Q 038708 10 PLKRFRLMQQQRE 22 (331)
Q Consensus 10 ~~~~~~~~~q~~~ 22 (331)
+.-|.+.+|||+|
T Consensus 66 ~~~~~~~~~~~~~ 78 (727)
T 4b8c_D 66 IYARQNAMKKYLA 78 (727)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 3445555555433
No 191
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.39 E-value=19 Score=27.64 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=22.0
Q ss_pred ccccccccccchhhhhhhcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...+.+...||..|.+ ..||+|+..+
T Consensus 40 ~CgH~fC~~Ci~~~~~--~~CP~Cr~~~ 65 (117)
T 1jm7_B 40 GCEHIFCSNCVSDCIG--TGCPVCYTPA 65 (117)
T ss_dssp SSSCCBCTTTGGGGTT--TBCSSSCCBC
T ss_pred CCCCHHHHHHHHHHhc--CCCcCCCCcC
Confidence 4566777899999987 8899999987
No 192
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=32.23 E-value=31 Score=20.62 Aligned_cols=27 Identities=22% Similarity=0.605 Sum_probs=20.0
Q ss_pred CCCcEeCcccccccccccccccccccCC
Q 038708 179 PDGDWFCAQCLAANDENRAFSCCLCPVG 206 (331)
Q Consensus 179 p~~~W~C~~C~~~~~~~~~~~C~lC~~~ 206 (331)
+...|.|+.|.+... .....|..|...
T Consensus 5 ~~~~W~C~~CT~~N~-~~~~~Ce~C~~~ 31 (34)
T 3a9j_C 5 MGAQWNCTACTFLNH-PALIRCEQCEMP 31 (34)
T ss_dssp CCCCEECTTTCCEEC-TTCSBCTTTCCB
T ss_pred CCCcCCCCCCccccC-CCCCeeCCCCCc
Confidence 456899999998743 356788888653
No 193
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=31.80 E-value=12 Score=30.60 Aligned_cols=28 Identities=11% Similarity=-0.114 Sum_probs=22.8
Q ss_pred ccccccccccchhhhhh-hcCCCCCCCCC
Q 038708 38 SDESTAKNLCLPAKKRK-YCFYPPPLPSS 65 (331)
Q Consensus 38 ~~~~~~~~~ci~~w~~~-~~~cPlc~~~f 65 (331)
.+.+.+...||..|.+. ...||+|+..+
T Consensus 72 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 72 ECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp TTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 34556668899999887 67899999987
No 194
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=31.61 E-value=7.1 Score=30.56 Aligned_cols=17 Identities=24% Similarity=0.663 Sum_probs=14.9
Q ss_pred CeeEeCCCCCCceEecccc
Q 038708 264 CSVECSEPKCCLSFHVTCG 282 (331)
Q Consensus 264 ~~i~C~~~~C~~~fHv~CA 282 (331)
.||+|.. |..|||..|.
T Consensus 1 ~mi~c~~--c~~w~H~~c~ 17 (140)
T 2ku7_A 1 SMMQCGK--CDRWVHSKCE 17 (140)
T ss_dssp CCCCCSC--CSSCHHHHHC
T ss_pred Ccccccc--CCCccCCccc
Confidence 3789987 9999999995
No 195
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=31.43 E-value=13 Score=24.76 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=13.9
Q ss_pred cccccCCchhHHHHHHH
Q 038708 3 TKFEALPPLKRFRLMQQ 19 (331)
Q Consensus 3 ~~~~~~~~~~~~~~~~q 19 (331)
.+|.+|||..|...++=
T Consensus 22 eQI~~LPp~qR~qI~~L 38 (49)
T 2j8p_A 22 DQIAMLPPEQRQSILIL 38 (49)
T ss_dssp HHHHTSCHHHHTHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 57999999999877643
No 196
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=31.42 E-value=29 Score=23.27 Aligned_cols=17 Identities=41% Similarity=1.124 Sum_probs=13.0
Q ss_pred CCCCCCcEeCcccccccc
Q 038708 176 KEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 176 ~~ip~~~W~C~~C~~~~~ 193 (331)
..+| .+|.|+.|...+.
T Consensus 31 ~~lP-~dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 31 EDLP-DDWACPVCGASKD 47 (52)
T ss_dssp TSSC-TTCCCSSSCCCTT
T ss_pred HHCC-CCCcCCCCCCcHH
Confidence 4465 6799999988764
No 197
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=31.36 E-value=18 Score=24.82 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=19.1
Q ss_pred ccccchhhhhhhcCCCCCCCCC
Q 038708 44 KNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 44 ~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...|+..|.+....||+|+..+
T Consensus 34 C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 34 CFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp CHHHHHHHHHTTCCCTTTCCCC
T ss_pred HHHHHHHHHHcCCcCCCcCcch
Confidence 3678999998888999999987
No 198
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.03 E-value=7.3 Score=27.98 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=25.4
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.+.|.+|+..=-.-..+-+.|..|...+|..|..
T Consensus 28 pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~ 61 (74)
T 2db6_A 28 PKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQS 61 (74)
T ss_dssp CEECSSSCCEECHHHHEEEEESSSCCEECTTTTG
T ss_pred CcCchhcChhhccccCCccccCCCCCccChhHHh
Confidence 4689999873100013678999999999999986
No 199
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=30.56 E-value=13 Score=28.41 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=22.6
Q ss_pred cccccccccchhhhhh-hcCCCCCCCCC
Q 038708 39 DESTAKNLCLPAKKRK-YCFYPPPLPSS 65 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~-~~~cPlc~~~f 65 (331)
..+.+...||..|.+. ...||+|+..+
T Consensus 41 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 41 CKHLFCRICILRCLKVMGSYCPSCRYPC 68 (116)
T ss_dssp TSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCcccHHHHHHHHhHCcCcCCCCCCCC
Confidence 4556668999999887 67999999998
No 200
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=30.01 E-value=39 Score=22.25 Aligned_cols=31 Identities=26% Similarity=0.655 Sum_probs=24.2
Q ss_pred ccccccCCCCCCeeEeCCCCCCceEeccccccC
Q 038708 253 KRCYICKSKRGCSVECSEPKCCLSFHVTCGLSE 285 (331)
Q Consensus 253 ~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~~ 285 (331)
..|.+|++..=.-++|.. |.-.+|..|+...
T Consensus 15 t~C~~C~k~i~~G~kC~~--Ck~~cH~kC~~~v 45 (49)
T 1kbe_A 15 QVCNVCQKSMIFGVKCKH--CRLKCHNKCTKEA 45 (49)
T ss_dssp CCCSSSCCSSCCEEEETT--TTEEESSSCTTTS
T ss_pred cCccccCceeECcCCCCC--CCCccchhhcCcC
Confidence 469999987422389975 9999999999754
No 201
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=29.77 E-value=20 Score=27.32 Aligned_cols=45 Identities=16% Similarity=0.576 Sum_probs=24.7
Q ss_pred cccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAA 191 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~ 191 (331)
+..|.||...- .+...+ .|+=.|+..|+..- +..+...||.|...
T Consensus 15 ~~~C~iC~~~~---~~p~~~--~CgH~fC~~Ci~~~----~~~~~~~CP~Cr~~ 59 (115)
T 3l11_A 15 ECQCGICMEIL---VEPVTL--PCNHTLCKPCFQST----VEKASLCCPFCRRR 59 (115)
T ss_dssp HHBCTTTCSBC---SSCEEC--TTSCEECHHHHCCC----CCTTTSBCTTTCCB
T ss_pred CCCCccCCccc---CceeEc--CCCCHHhHHHHHHH----HhHCcCCCCCCCcc
Confidence 46799999752 133333 57766666666421 22233455555544
No 202
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.49 E-value=23 Score=24.64 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=23.0
Q ss_pred cccccccccccccCCCCCCeEEccCCCcccccccccC
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGN 172 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~ 172 (331)
.+...|.||...- .....+..-.|+-.||..|+..
T Consensus 21 ~~~~~C~IC~~~~--~~~~~~~~l~C~H~fh~~Ci~~ 55 (75)
T 1x4j_A 21 SEQTLCVVCMCDF--ESRQLLRVLPCNHEFHAKCVDK 55 (75)
T ss_dssp SSCCEETTTTEEC--CBTCEEEEETTTEEEETTHHHH
T ss_pred CCCCCCeECCccc--CCCCeEEEECCCCHhHHHHHHH
Confidence 3446799999753 2233444445888899999863
No 203
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.48 E-value=50 Score=23.20 Aligned_cols=18 Identities=33% Similarity=0.960 Sum_probs=14.2
Q ss_pred cCccccccCCCCCCe-eEe
Q 038708 251 REKRCYICKSKRGCS-VEC 268 (331)
Q Consensus 251 ~~~~C~iC~~~~G~~-i~C 268 (331)
...+|..|++..|.+ +.|
T Consensus 14 ~~~rC~~C~kkvgl~~f~C 32 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC 32 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC
T ss_pred cCCcChhhCCcccccCeEe
Confidence 456899999987764 778
No 204
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=29.12 E-value=51 Score=24.27 Aligned_cols=17 Identities=47% Similarity=1.115 Sum_probs=13.1
Q ss_pred CCCCCCcEeCcccccccc
Q 038708 176 KEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 176 ~~ip~~~W~C~~C~~~~~ 193 (331)
..+| .+|.||.|-..+.
T Consensus 55 edlP-ddW~CPvCga~K~ 71 (81)
T 2kn9_A 55 DDIP-DDWSCPDCGAAKS 71 (81)
T ss_dssp TTSC-TTCCCTTTCCCGG
T ss_pred hHCC-CCCcCCCCCCCHH
Confidence 4566 5799999998764
No 205
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=28.51 E-value=24 Score=26.15 Aligned_cols=30 Identities=23% Similarity=0.647 Sum_probs=23.9
Q ss_pred ccccccccccCCCCCCeEEccC--CCccccccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDG--CDLMVHATCYG 171 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~g 171 (331)
..|.+|... ..+--+.|.. |..+||..|--
T Consensus 18 l~C~iC~~~---~~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 18 LTCYLCKQK---GVGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCBTTTTBC---CSSCEEECSCTTTCCEEEHHHHH
T ss_pred CCCcCCCCC---CCcEeEecCCCCCCCcCcHHHHH
Confidence 579999863 2367899976 99999999963
No 206
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.46 E-value=11 Score=24.62 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=17.2
Q ss_pred cccccccccchhh---hhhhcCCCCC
Q 038708 39 DESTAKNLCLPAK---KRKYCFYPPP 61 (331)
Q Consensus 39 ~~~~~~~~ci~~w---~~~~~~cPlc 61 (331)
..+.+...||..| .+....||+|
T Consensus 33 CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 33 CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4556668899999 4456789987
No 207
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=28.09 E-value=29 Score=21.21 Aligned_cols=26 Identities=31% Similarity=0.807 Sum_probs=18.5
Q ss_pred CCCcEeCcccccccccccccccccccC
Q 038708 179 PDGDWFCAQCLAANDENRAFSCCLCPV 205 (331)
Q Consensus 179 p~~~W~C~~C~~~~~~~~~~~C~lC~~ 205 (331)
..|.|-|+.|..... .....|..|..
T Consensus 4 ~~G~W~C~~C~v~N~-~~~~kC~aCet 29 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNK-ADSTKCIACES 29 (34)
T ss_dssp --CCEECTTTCCEEC-SSCSBCTTTCC
T ss_pred CCCceECCeeEeECc-cccCEEcccCC
Confidence 468999999998743 45668888853
No 208
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=28.03 E-value=18 Score=24.70 Aligned_cols=31 Identities=19% Similarity=0.547 Sum_probs=25.6
Q ss_pred cccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
.+.|..|+..= ..+-+.|..|+..+|..|..
T Consensus 22 pt~C~~C~~~i---~kqg~kC~~C~~~cH~kC~~ 52 (59)
T 1rfh_A 22 PGWCDLCGREV---LRQALRCANCKFTCHSECRS 52 (59)
T ss_dssp CEECTTTCSEE---CSCCEECTTTSCEECHHHHT
T ss_pred CeEchhcchhh---hhCccEeCCCCCeEehhhhh
Confidence 36899998743 36678899999999999985
No 209
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=26.78 E-value=21 Score=20.01 Aligned_cols=15 Identities=47% Similarity=0.598 Sum_probs=11.6
Q ss_pred CC-cccccCCchhHHH
Q 038708 1 MD-TKFEALPPLKRFR 15 (331)
Q Consensus 1 ~~-~~~~~~~~~~~~~ 15 (331)
|| |.|++--|.||+|
T Consensus 7 mditdinapkpkkk~r 22 (26)
T 2yvc_D 7 MDITDINAPKPKKKQR 22 (26)
T ss_pred cccccccCCCcchhhc
Confidence 66 7788877888776
No 210
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.69 E-value=25 Score=23.24 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=8.7
Q ss_pred cccccccccccc
Q 038708 136 DDGILCAVCQST 147 (331)
Q Consensus 136 ~~~~~C~vC~~~ 147 (331)
.+...|.||...
T Consensus 4 ~~~~~C~IC~~~ 15 (56)
T 1bor_A 4 FQFLRCQQCQAE 15 (56)
T ss_dssp CCCSSCSSSCSS
T ss_pred ccCCCceEeCCc
Confidence 445679999874
No 211
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=26.66 E-value=17 Score=29.57 Aligned_cols=26 Identities=12% Similarity=-0.008 Sum_probs=21.0
Q ss_pred ccccccccchhhhhhhc-CCCCCCCCC
Q 038708 40 ESTAKNLCLPAKKRKYC-FYPPPLPSS 65 (331)
Q Consensus 40 ~~~~~~~ci~~w~~~~~-~cPlc~~~f 65 (331)
-+.+...||..|.+... .||+|+..+
T Consensus 97 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 97 FHNVCKDCLQRSFKAQVFSCPACRHDL 123 (150)
T ss_dssp SCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCchhHHHHHHHHHhCCCcCCCCCccC
Confidence 34455789999988765 899999998
No 212
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=25.97 E-value=31 Score=25.76 Aligned_cols=27 Identities=33% Similarity=0.892 Sum_probs=19.1
Q ss_pred CCCCcEeCcccccccccccccccccccC
Q 038708 178 IPDGDWFCAQCLAANDENRAFSCCLCPV 205 (331)
Q Consensus 178 ip~~~W~C~~C~~~~~~~~~~~C~lC~~ 205 (331)
.+.|+|.|+.|..... .....|+.|..
T Consensus 61 ~~~g~W~C~~C~~~N~-a~~~~C~~C~~ 87 (92)
T 3gj8_B 61 KPEGSWDCEVCLVQNK-ADSTKCIACES 87 (92)
T ss_dssp ---CCEECTTTCCEEC-SSCSBCTTTCC
T ss_pred CCCCcccCCcCCcCCh-hhcccccccCC
Confidence 3679999999998743 36778888854
No 213
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=25.47 E-value=23 Score=24.14 Aligned_cols=22 Identities=14% Similarity=-0.070 Sum_probs=19.0
Q ss_pred ccccchhhhhhhcCCCCCCCCC
Q 038708 44 KNLCLPAKKRKYCFYPPPLPSS 65 (331)
Q Consensus 44 ~~~ci~~w~~~~~~cPlc~~~f 65 (331)
...|+..|.+....||+|+..+
T Consensus 33 C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 33 CFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp CHHHHHHHHHTTCBCTTTCCBC
T ss_pred HHHHHHHHHHhCCcCCCcCchh
Confidence 4678888988888999999987
No 214
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.31 E-value=54 Score=21.86 Aligned_cols=17 Identities=35% Similarity=1.071 Sum_probs=12.8
Q ss_pred CCCCCCcEeCcccccccc
Q 038708 176 KEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 176 ~~ip~~~W~C~~C~~~~~ 193 (331)
..+| .+|.|+.|...+.
T Consensus 30 ~~lP-~dw~CP~Cg~~K~ 46 (52)
T 1yk4_A 30 EDLP-DDWVCPLCGAPKS 46 (52)
T ss_dssp GGSC-TTCBCTTTCCBGG
T ss_pred hHCC-CCCcCCCCCCCHH
Confidence 3455 6799999988754
No 215
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.08 E-value=17 Score=24.39 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=17.4
Q ss_pred cccccccccchhhhhh---hcCCCCC
Q 038708 39 DESTAKNLCLPAKKRK---YCFYPPP 61 (331)
Q Consensus 39 ~~~~~~~~ci~~w~~~---~~~cPlc 61 (331)
..+.+...||..|.+. ...||+|
T Consensus 38 CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 38 CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4556668999999874 4589987
No 216
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.08 E-value=65 Score=22.60 Aligned_cols=19 Identities=32% Similarity=0.966 Sum_probs=14.8
Q ss_pred ccCccccccCCCCCCe-eEe
Q 038708 250 RREKRCYICKSKRGCS-VEC 268 (331)
Q Consensus 250 ~~~~~C~iC~~~~G~~-i~C 268 (331)
....+|..|++..|.+ +.|
T Consensus 13 ~~~~rC~~C~kkvgl~~f~C 32 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMC 32 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEEC
T ss_pred CcCCcChhhCCccCccCEEe
Confidence 3457899999987775 777
No 217
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.97 E-value=64 Score=21.15 Aligned_cols=29 Identities=31% Similarity=0.806 Sum_probs=22.4
Q ss_pred CCCCCcEeCcccccccccccccccccccCC
Q 038708 177 EIPDGDWFCAQCLAANDENRAFSCCLCPVG 206 (331)
Q Consensus 177 ~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~ 206 (331)
..++|.|-|..|..... .....|+.|...
T Consensus 6 k~~~gsW~C~~C~v~N~-a~~~kC~aC~~p 34 (47)
T 2ebr_A 6 SGPEGSWDCELCLVQNK-ADSTKCLACESA 34 (47)
T ss_dssp SSCCSSCCCSSSCCCCC-SSCSBCSSSCCB
T ss_pred cCCCCeeECCeeecCCc-CCcceecCcCCC
Confidence 45679999999998743 568889999643
No 218
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.93 E-value=39 Score=28.14 Aligned_cols=32 Identities=28% Similarity=0.637 Sum_probs=27.7
Q ss_pred CccccccCCCCCCeeEeCCCCCCceEecccccc
Q 038708 252 EKRCYICKSKRGCSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 252 ~~~C~iC~~~~G~~i~C~~~~C~~~fHv~CA~~ 284 (331)
..+|.+|... |.++-|+...|...|=..|...
T Consensus 79 ~~yC~wC~~G-g~l~~Cdn~~C~r~FC~~CI~~ 110 (159)
T 3a1b_A 79 QSYCTICCGG-REVLMCGNNNCCRCFCVECVDL 110 (159)
T ss_dssp BSSCTTTSCC-SEEEECSSTTTCCEEEHHHHHH
T ss_pred cceeeEecCC-CeEEeeCCCCCCCchhHHHHHH
Confidence 4689999976 8889999889999999999843
No 219
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.91 E-value=35 Score=24.35 Aligned_cols=17 Identities=12% Similarity=0.692 Sum_probs=13.2
Q ss_pred CCCCCCcEeCcccccccc
Q 038708 176 KEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 176 ~~ip~~~W~C~~C~~~~~ 193 (331)
..+| .+|.||.|...+.
T Consensus 35 ~~lP-ddw~CP~Cga~K~ 51 (70)
T 1dx8_A 35 VDLS-DSFMCPACRSPKN 51 (70)
T ss_dssp GGSC-TTCBCTTTCCBGG
T ss_pred hhCC-CCCcCCCCCCCHH
Confidence 4465 5799999998865
No 220
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=24.78 E-value=35 Score=34.51 Aligned_cols=95 Identities=18% Similarity=0.370 Sum_probs=0.0
Q ss_pred ccccccccccCCCCCCeEEccCCCcccccccccCCCCCCCCCCcEeCcccccccccccccccccccCCCCCCcccccccc
Q 038708 139 ILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYGNPLVKEIPDGDWFCAQCLAANDENRAFSCCLCPVGGGAMKPTKDGLW 218 (331)
Q Consensus 139 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g~p~~~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~gGalk~t~~~~w 218 (331)
++|.+|+..=-.-..+-+.|..|+..+|..|.. .-... |+...-.........-
T Consensus 49 ~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~---~v~~~-----------------------c~~~~~~~~~~~~~~~ 102 (674)
T 3pfq_A 49 TFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHE---FVTFS-----------------------CPGADKGPASDDPRSK 102 (674)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CccccccccccccCCceeECCCCCCCcChhhcC---cCccc-----------------------CCCcccccccccccCC
Q ss_pred ceeeccccCCeeEEeCCCCCccccccCccccccCccccccCCCCC----CeeEeCCCCCCceEecccccc
Q 038708 219 AHVVCAVLVPEVFFEDPEGREGIDCSKVPKTRREKRCYICKSKRG----CSVECSEPKCCLSFHVTCGLS 284 (331)
Q Consensus 219 vH~~Cal~~pe~~f~~~~~~~~v~~~~i~~~~~~~~C~iC~~~~G----~~i~C~~~~C~~~fHv~CA~~ 284 (331)
.|. .+........|..|+.... --++|.. |...+|-.|+..
T Consensus 103 h~~-----------------------~~~~~~~~~~C~~C~~~l~g~~~qg~~C~~--C~~~~H~~C~~~ 147 (674)
T 3pfq_A 103 HKF-----------------------KIHTYSSPTFCDHCGSLLYGLIHQGMKCDT--CMMNVHKRCVMN 147 (674)
T ss_dssp CCC-----------------------CEECCSSCCCCSSSCSCCBBSSSCEECCSS--SCCCBCSSTTSS
T ss_pred cce-----------------------eecCCCCCCCCCccccccchhhcCcccccc--CCcchhhhhhhc
No 221
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=23.96 E-value=47 Score=31.13 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=28.6
Q ss_pred cccccccccccccCCCCCCeEEccCCCccccccccc
Q 038708 136 DDGILCAVCQSTDGDSKDPIVFCDGCDLMVHATCYG 171 (331)
Q Consensus 136 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~g 171 (331)
...+.|.+|+..-..-..+-..|..|+..+|..|..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 455789999975322346788999999999999986
No 222
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=23.67 E-value=39 Score=20.46 Aligned_cols=26 Identities=35% Similarity=0.891 Sum_probs=18.5
Q ss_pred CCCcEeCcccccccccccccccccccC
Q 038708 179 PDGDWFCAQCLAANDENRAFSCCLCPV 205 (331)
Q Consensus 179 p~~~W~C~~C~~~~~~~~~~~C~lC~~ 205 (331)
..|.|-|+.|..... .....|..|..
T Consensus 4 ~~g~W~C~~C~~~N~-~~~~kC~aC~t 29 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNK-PEAVKCVACET 29 (33)
T ss_dssp --CCEECTTTCCEEC-TTCSBCTTTCC
T ss_pred CCCceeCCcccCCCc-cccCEEcccCC
Confidence 358999999998743 35678888853
No 223
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=23.41 E-value=46 Score=21.54 Aligned_cols=27 Identities=22% Similarity=0.711 Sum_probs=18.3
Q ss_pred cccccccccc--CCCCCCeEEccCCCccc
Q 038708 139 ILCAVCQSTD--GDSKDPIVFCDGCDLMV 165 (331)
Q Consensus 139 ~~C~vC~~~~--~~~~~~ll~Cd~C~~~~ 165 (331)
..|..|+..+ .+.....+.|..|+..|
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 4699997632 22345568899998877
No 224
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.03 E-value=52 Score=21.64 Aligned_cols=30 Identities=30% Similarity=0.668 Sum_probs=22.8
Q ss_pred CCCCCCcEeCcccccccccccccccccccCC
Q 038708 176 KEIPDGDWFCAQCLAANDENRAFSCCLCPVG 206 (331)
Q Consensus 176 ~~ip~~~W~C~~C~~~~~~~~~~~C~lC~~~ 206 (331)
...++|.|-|..|..... .....|+.|...
T Consensus 5 ~~~~~g~W~C~~C~v~N~-a~~~kC~aCetp 34 (47)
T 2ebq_A 5 SSGVIGTWDCDTCLVQNK-PEAIKCVACETP 34 (47)
T ss_dssp CCCCSSSEECSSSCCEEC-SSCSBCSSSCCB
T ss_pred cCCCCCceECCeeeccCc-cCCceecCcCCC
Confidence 345679999999998743 567889999643
No 225
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=22.32 E-value=62 Score=21.83 Aligned_cols=17 Identities=35% Similarity=1.027 Sum_probs=12.9
Q ss_pred CCCCCCcEeCcccccccc
Q 038708 176 KEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 176 ~~ip~~~W~C~~C~~~~~ 193 (331)
..+| .+|.||.|...+.
T Consensus 31 ~~lP-~dw~CP~Cga~K~ 47 (55)
T 2v3b_B 31 EDIP-ADWVCPDCGVGKI 47 (55)
T ss_dssp GGSC-TTCCCTTTCCCGG
T ss_pred hHCC-CCCcCCCCCCCHH
Confidence 3455 6799999998764
No 226
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.25 E-value=26 Score=25.08 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=29.3
Q ss_pred CccccccCCCCC--CeeEeCCCCCCceEeccccccCCceEEeecCCCC--CceEEEcCCCcccch
Q 038708 252 EKRCYICKSKRG--CSVECSEPKCCLSFHVTCGLSEDLCIEYREGKKG--GAVVAGFCKDHTEIW 312 (331)
Q Consensus 252 ~~~C~iC~~~~G--~~i~C~~~~C~~~fHv~CA~~~g~~~~~~~~~~~--~~~~~~~C~~H~~~~ 312 (331)
..+|..|++... ..|. -=.+.||+.|-.-...........-- ...-.+||+.|....
T Consensus 15 ~~~C~~C~~~I~~~e~v~----a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC----VNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC----BTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred CCCCcccCCCcccceEEE----ECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 457999998753 3343 13578888775443221111110000 001147999998643
No 227
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=22.16 E-value=32 Score=25.42 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=25.6
Q ss_pred cccccccccccCCC-CCC--eEEccCCCccccccccc
Q 038708 138 GILCAVCQSTDGDS-KDP--IVFCDGCDLMVHATCYG 171 (331)
Q Consensus 138 ~~~C~vC~~~~~~~-~~~--ll~Cd~C~~~~H~~C~g 171 (331)
.++|..|+..= +. ..+ -+.|..|...+|..|..
T Consensus 35 PT~Cd~C~~~l-WGl~kqp~G~~C~~C~~~~HkrC~~ 70 (84)
T 2row_A 35 PTNCEACMKPL-WHMFKPPPALECRRCHIKCHKDHMD 70 (84)
T ss_dssp CEECSSSSSEE-CCSSSCCCEEEESSSCCEEEHHHHH
T ss_pred CcchhhcCHhh-hccccCCCCCEecCCCCccchhHhC
Confidence 37899998742 22 233 88999999999999997
No 228
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.40 E-value=57 Score=24.32 Aligned_cols=17 Identities=41% Similarity=1.175 Sum_probs=13.2
Q ss_pred CCCCCCcEeCcccccccc
Q 038708 176 KEIPDGDWFCAQCLAAND 193 (331)
Q Consensus 176 ~~ip~~~W~C~~C~~~~~ 193 (331)
..+| .+|.|+.|-..+.
T Consensus 63 edlP-ddW~CPvCga~K~ 79 (87)
T 1s24_A 63 EDIP-DDWCCPDCGATKE 79 (87)
T ss_dssp GGCC-TTCCCSSSCCCGG
T ss_pred hHCC-CCCCCCCCCCCHH
Confidence 4566 6799999998764
No 229
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=21.01 E-value=21 Score=36.62 Aligned_cols=10 Identities=20% Similarity=0.115 Sum_probs=4.5
Q ss_pred ccchhhhhhh
Q 038708 46 LCLPAKKRKY 55 (331)
Q Consensus 46 ~ci~~w~~~~ 55 (331)
++...|....
T Consensus 144 ~~~~~~~~~~ 153 (727)
T 4b8c_D 144 LTDSKTAKKQ 153 (727)
T ss_dssp HHHHHTTC--
T ss_pred cccccCcccC
Confidence 4555665543
No 230
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=20.33 E-value=48 Score=32.87 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=18.1
Q ss_pred CCCCCeeEeCCCCCCceEecccc
Q 038708 260 SKRGCSVECSEPKCCLSFHVTCG 282 (331)
Q Consensus 260 ~~~G~~i~C~~~~C~~~fHv~CA 282 (331)
.....+|+|.. |..+||..|.
T Consensus 53 n~~~~mI~CD~--C~~WfH~~CV 73 (528)
T 3pur_A 53 KNDFQWIGCDS--CQTWYHFLCS 73 (528)
T ss_dssp TSTTSEEECTT--TCCEEEGGGT
T ss_pred CcCCCEEECCC--CCcCCCCcCC
Confidence 34578999985 9999999998
No 231
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.13 E-value=95 Score=23.00 Aligned_cols=20 Identities=40% Similarity=0.959 Sum_probs=15.2
Q ss_pred cccCccccccCCCCCC--eeEe
Q 038708 249 TRREKRCYICKSKRGC--SVEC 268 (331)
Q Consensus 249 ~~~~~~C~iC~~~~G~--~i~C 268 (331)
......|.+|+++.|. .+.|
T Consensus 22 k~~~~rC~~C~kkvgl~~~f~C 43 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLATSFEC 43 (85)
T ss_dssp CCCCCBCSSSCCBCSSSSCEEC
T ss_pred cccCccchhhCCeecccCCeEc
Confidence 3445789999999887 4677
Done!