Query 038709
Match_columns 67
No_of_seqs 106 out of 850
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 03:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.4E-23 4.7E-28 117.7 3.8 46 21-66 2-48 (63)
2 3igm_B PF14_0633 protein; AP2 97.1 0.00032 1.1E-08 40.2 2.4 46 16-64 2-57 (77)
3 1u3e_M HNH homing endonuclease 94.6 0.0045 1.5E-07 39.0 -0.7 38 22-62 109-146 (174)
4 1z1b_A Integrase; protein-DNA 89.8 0.52 1.8E-05 30.8 4.5 36 24-63 15-50 (356)
5 3jtz_A Integrase; four strande 81.4 2.7 9.3E-05 23.7 4.1 40 25-64 28-71 (88)
6 1uta_A FTSN, MSGA, cell divisi 80.0 1.9 6.5E-05 23.4 3.1 29 35-63 37-65 (81)
7 1x60_A Sporulation-specific N- 79.8 0.93 3.2E-05 24.4 1.7 21 43-63 45-65 (79)
8 3ju0_A Phage integrase; four s 70.0 7.3 0.00025 22.7 4.0 39 25-63 28-70 (108)
9 1b69_A Protein (integrase); in 64.9 15 0.00051 20.1 4.3 28 19-47 9-36 (69)
10 2lfv_A Protein DAMX; cell divi 49.5 4.9 0.00017 23.5 0.0 19 45-63 65-83 (106)
11 2ftc_I Mitochondrial ribosomal 40.3 52 0.0018 19.4 4.2 32 32-65 79-110 (118)
12 2cqh_A IGF-II mRNA-binding pro 39.8 20 0.00068 18.9 2.2 14 50-63 50-63 (93)
13 2lxi_A RNA-binding protein 10; 37.9 14 0.00048 19.8 1.3 14 50-63 50-63 (91)
14 2cqb_A Peptidyl-prolyl CIS-tra 36.3 24 0.00082 18.8 2.2 15 49-63 59-73 (102)
15 2cq2_A Hypothetical protein LO 36.0 14 0.00046 21.6 1.1 18 46-63 65-82 (114)
16 2bn8_A CEDA, cell division act 34.3 27 0.00092 19.7 2.1 38 19-59 37-74 (87)
17 2vh1_A FTSQ, cell division pro 33.4 86 0.0029 19.3 5.4 35 20-58 130-164 (220)
18 1wg1_A KIAA1579 protein, homol 33.1 30 0.001 18.1 2.2 15 49-63 45-59 (88)
19 3r8s_M 50S ribosomal protein L 32.6 78 0.0027 19.2 4.2 31 32-65 91-121 (136)
20 1wey_A Calcipressin 1; structu 32.3 11 0.00038 22.2 0.3 14 49-62 51-64 (104)
21 3p5t_L Cleavage and polyadenyl 32.2 31 0.0011 18.1 2.1 15 49-63 50-64 (90)
22 2fc8_A NCL protein; structure 32.0 23 0.0008 18.9 1.6 15 49-63 59-73 (102)
23 2drn_C 24-residues peptide fro 31.5 34 0.0012 15.3 1.8 13 52-64 1-13 (26)
24 2hvz_A Splicing factor, argini 31.0 25 0.00085 18.8 1.6 14 50-63 43-56 (101)
25 1kcq_A Gelsolin, brevin, ADF, 30.9 72 0.0025 17.7 3.8 34 32-65 28-61 (104)
26 3awu_B MELC; tyrosinase, binar 30.9 16 0.00056 22.5 0.9 12 49-60 99-110 (134)
27 1x5s_A Cold-inducible RNA-bind 30.8 25 0.00086 18.7 1.6 15 49-63 59-73 (102)
28 2fc9_A NCL protein; structure 30.6 26 0.00088 18.7 1.6 15 49-63 58-72 (101)
29 2dgt_A RNA-binding protein 30; 30.4 21 0.00072 18.8 1.2 15 49-63 49-63 (92)
30 2cqc_A Arginine/serine-rich sp 30.2 20 0.00068 18.8 1.1 15 49-63 62-76 (95)
31 4fxv_A ELAV-like protein 1; RN 30.1 20 0.00068 19.6 1.1 14 50-63 67-80 (99)
32 3bs9_A Nucleolysin TIA-1 isofo 30.0 20 0.0007 18.4 1.1 14 50-63 54-67 (87)
33 2dgu_A Heterogeneous nuclear r 29.9 20 0.00069 19.3 1.1 14 50-63 51-64 (103)
34 4a8x_A RNA-binding protein wit 29.8 21 0.00071 18.4 1.1 15 49-63 52-66 (88)
35 1x5t_A Splicing factor 3B subu 29.4 22 0.00076 18.7 1.2 14 50-63 54-67 (96)
36 2dnq_A RNA-binding protein 4B; 29.1 22 0.00074 18.6 1.1 14 50-63 48-61 (90)
37 1p1t_A Cleavage stimulation fa 29.0 28 0.00097 18.5 1.7 15 49-63 55-69 (104)
38 3mdf_A Peptidyl-prolyl CIS-tra 29.0 22 0.00075 18.2 1.1 14 50-63 55-68 (85)
39 2pe8_A Splicing factor 45; RRM 28.6 23 0.00079 19.8 1.2 14 50-63 62-75 (105)
40 2e5h_A Zinc finger CCHC-type a 28.4 23 0.00077 18.6 1.1 14 50-63 64-77 (94)
41 1x4e_A RNA binding motif, sing 28.3 23 0.00078 18.2 1.1 14 50-63 53-66 (85)
42 3md1_A Nuclear and cytoplasmic 28.1 23 0.0008 18.0 1.1 15 49-63 48-62 (83)
43 2dnl_A Cytoplasmic polyadenyla 27.9 39 0.0013 18.6 2.2 14 50-63 58-71 (114)
44 2dnp_A RNA-binding protein 14; 27.9 23 0.0008 18.5 1.1 15 49-63 48-62 (90)
45 1why_A Hypothetical protein ri 27.6 25 0.00085 18.7 1.2 15 49-63 58-72 (97)
46 2fy1_A RNA-binding motif prote 27.6 30 0.001 19.3 1.6 15 49-63 53-67 (116)
47 2cpx_A Hypothetical protein FL 27.5 31 0.0011 18.8 1.6 18 46-63 69-86 (115)
48 2cpi_A CCR4-NOT transcription 27.5 23 0.0008 19.5 1.1 15 49-63 68-82 (111)
49 3ufx_B Succinyl-COA synthetase 27.4 26 0.00089 24.5 1.6 20 48-67 357-376 (397)
50 1jmt_A Splicing factor U2AF 35 27.4 25 0.00086 19.5 1.2 14 50-63 74-87 (104)
51 3v4m_A Splicing factor U2AF 65 27.3 30 0.001 19.3 1.6 14 50-63 65-78 (105)
52 2do4_A Squamous cell carcinoma 27.2 24 0.00083 18.8 1.1 14 50-63 64-77 (100)
53 1x4a_A Splicing factor, argini 27.2 26 0.00087 19.0 1.2 14 50-63 67-80 (109)
54 2div_A TRNA selenocysteine ass 27.1 30 0.001 18.3 1.5 14 50-63 58-71 (99)
55 1uzc_A Hypothetical protein FL 26.8 49 0.0017 17.8 2.4 16 49-64 9-24 (71)
56 2dnz_A Probable RNA-binding pr 26.6 27 0.00092 18.3 1.2 15 49-63 52-66 (95)
57 2cqp_A RNA-binding protein 12; 26.6 25 0.00087 18.6 1.1 14 50-63 63-76 (98)
58 2cqi_A Nucleolysin TIAR; RNA r 26.5 27 0.00092 18.7 1.2 14 50-63 61-74 (103)
59 3gwr_A Putative calcium/calmod 26.4 40 0.0014 19.7 2.1 17 49-65 5-21 (144)
60 2dgx_A KIAA0430 protein; RRM d 26.4 27 0.00092 18.6 1.2 14 50-63 58-71 (96)
61 2cpz_A CUG triplet repeat RNA- 26.3 33 0.0011 18.7 1.6 14 50-63 73-86 (115)
62 4esq_A Serine/threonine protei 26.0 33 0.0011 21.3 1.8 19 47-65 89-107 (194)
63 1nu4_A U1A RNA binding domain; 26.0 26 0.0009 18.4 1.1 14 50-63 57-70 (97)
64 2dnh_A Bruno-like 5, RNA bindi 26.0 26 0.00089 18.8 1.1 14 50-63 62-75 (105)
65 1whw_A Hypothetical protein ri 25.9 26 0.0009 18.5 1.1 15 49-63 55-69 (99)
66 1uaw_A Mouse-musashi-1; RNP-ty 25.9 25 0.00084 17.6 1.0 14 50-63 48-61 (77)
67 3s8s_A Histone-lysine N-methyl 25.9 27 0.00094 19.5 1.2 15 49-63 53-67 (110)
68 2la4_A Nuclear and cytoplasmic 25.8 35 0.0012 18.1 1.6 15 49-63 68-82 (101)
69 2ek1_A RNA-binding protein 12; 25.6 27 0.00093 18.3 1.1 14 50-63 63-76 (95)
70 2cpe_A RNA-binding protein EWS 25.6 31 0.001 18.8 1.4 14 50-63 71-84 (113)
71 3beg_B Splicing factor, argini 25.5 28 0.00097 19.3 1.2 14 50-63 57-70 (115)
72 1x5u_A Splicing factor 3B subu 25.4 27 0.00093 18.7 1.1 14 50-63 63-76 (105)
73 2cpf_A RNA binding motif prote 25.3 28 0.00094 18.4 1.1 14 50-63 56-69 (98)
74 2dgv_A HnRNP M, heterogeneous 25.2 28 0.00096 18.1 1.1 15 49-63 53-67 (92)
75 2x1f_A MRNA 3'-END-processing 25.2 29 0.001 18.3 1.2 14 50-63 50-63 (96)
76 3bid_A UPF0339 protein NMB1088 25.0 84 0.0029 16.5 5.3 36 26-62 6-42 (64)
77 3ue2_A Poly(U)-binding-splicin 24.7 28 0.00095 20.0 1.1 14 50-63 77-90 (118)
78 2cph_A RNA binding motif prote 24.7 29 0.00098 18.6 1.1 15 49-63 63-77 (107)
79 2dgw_A Probable RNA-binding pr 24.6 35 0.0012 17.7 1.5 13 50-62 56-68 (91)
80 2kvi_A Nuclear polyadenylated 24.4 29 0.001 18.4 1.1 14 50-63 51-64 (96)
81 2cpd_A Apobec-1 stimulating pr 24.4 31 0.0011 18.3 1.2 15 49-63 56-70 (99)
82 2cq3_A RNA-binding protein 9; 24.4 29 0.001 18.5 1.1 15 49-63 60-74 (103)
83 2diu_A KIAA0430 protein; struc 24.2 37 0.0013 19.5 1.6 15 50-64 52-66 (96)
84 2dgp_A Bruno-like 4, RNA bindi 24.2 31 0.0011 18.5 1.2 15 49-63 60-74 (106)
85 4f25_A Polyadenylate-binding p 24.2 29 0.001 19.2 1.1 14 50-63 51-64 (115)
86 2dit_A HIV TAT specific factor 24.2 39 0.0013 18.6 1.7 15 49-63 69-83 (112)
87 2lkz_A RNA-binding protein 5; 24.1 27 0.00092 19.2 0.9 14 50-63 59-72 (95)
88 1fjc_A Nucleolin RBD2, protein 24.0 30 0.001 18.2 1.1 14 50-63 59-72 (96)
89 2cpj_A Non-POU domain-containi 23.9 27 0.00094 18.6 0.9 15 49-63 56-70 (99)
90 2wbr_A GW182, gawky, LD47780P; 23.7 39 0.0013 19.1 1.6 20 44-63 43-62 (89)
91 2krb_A Eukaryotic translation 23.6 22 0.00075 18.3 0.5 14 50-63 53-66 (81)
92 2dhg_A TRNA selenocysteine ass 23.6 31 0.0011 18.4 1.1 14 50-63 57-70 (104)
93 3s6e_A RNA-binding protein 39; 23.4 51 0.0017 18.8 2.1 14 50-63 61-74 (114)
94 1x5p_A Negative elongation fac 23.3 32 0.0011 18.3 1.1 14 50-63 55-68 (97)
95 2mss_A Protein (musashi1); RNA 23.3 33 0.0011 17.1 1.2 13 50-62 47-59 (75)
96 2e5j_A Methenyltetrahydrofolat 23.3 42 0.0014 17.7 1.6 14 50-63 62-75 (97)
97 2dgo_A Cytotoxic granule-assoc 23.0 32 0.0011 18.8 1.1 15 49-63 62-76 (115)
98 1iqt_A AUF1, heterogeneous nuc 22.9 23 0.00079 17.7 0.5 13 50-62 47-59 (75)
99 2d9p_A Polyadenylate-binding p 22.9 33 0.0011 18.3 1.1 16 48-63 59-74 (103)
100 3ulh_A THO complex subunit 4; 22.7 33 0.0011 18.4 1.1 15 49-63 75-89 (107)
101 1svq_A Severin; actin-binding; 22.4 83 0.0028 17.8 2.9 30 35-64 41-70 (114)
102 2la6_A RNA-binding protein FUS 22.4 41 0.0014 17.8 1.5 14 50-63 69-82 (99)
103 3bsu_A Ribonuclease H1, RNAse 22.3 40 0.0014 17.1 1.3 14 49-62 36-49 (53)
104 2ra8_A Uncharacterized protein 22.3 42 0.0014 22.7 1.8 19 46-64 38-56 (362)
105 2cq0_A Eukaryotic translation 22.2 34 0.0012 18.2 1.1 14 50-63 63-76 (103)
106 1x4c_A Splicing factor, argini 22.2 34 0.0012 18.6 1.1 15 49-63 55-69 (108)
107 2ytc_A PRE-mRNA-splicing facto 22.1 32 0.0011 17.5 1.0 15 49-63 53-67 (85)
108 1p27_B RNA-binding protein 8A; 21.7 36 0.0012 18.2 1.1 14 50-63 71-84 (106)
109 3ns6_A Eukaryotic translation 21.6 36 0.0012 18.4 1.1 14 50-63 60-73 (100)
110 2cq1_A PTB-like protein L; RRM 21.6 35 0.0012 18.9 1.1 18 46-63 53-70 (101)
111 1wf1_A RNA-binding protein RAL 21.4 33 0.0011 18.7 0.9 14 50-63 68-81 (110)
112 1whx_A Hypothetical protein ri 21.3 38 0.0013 18.7 1.2 15 49-63 51-65 (111)
113 2jvo_A Nucleolar protein 3; nu 21.0 49 0.0017 18.2 1.6 15 49-63 70-84 (108)
114 3ex7_B RNA-binding protein 8A; 20.9 39 0.0013 18.7 1.2 14 50-63 70-83 (126)
115 2ywk_A Putative RNA-binding pr 20.9 31 0.001 18.0 0.7 14 50-63 63-76 (95)
116 1vqs_A Hypothetical protein AG 20.6 1E+02 0.0034 17.5 3.0 32 31-64 51-82 (116)
117 2hzc_A Splicing factor U2AF 65 20.4 31 0.001 17.7 0.6 13 49-61 58-70 (87)
118 2err_A Ataxin-2-binding protei 20.4 35 0.0012 18.7 0.9 14 50-63 75-88 (109)
119 2dha_A FLJ20171 protein; RRM d 20.4 47 0.0016 19.1 1.5 13 50-62 74-86 (123)
120 1x4h_A RNA-binding protein 28; 20.4 41 0.0014 18.0 1.2 14 50-63 63-76 (111)
121 2dgs_A DAZ-associated protein 20.3 37 0.0012 18.0 1.0 14 49-62 57-70 (99)
122 1x4g_A Nucleolysin TIAR; struc 20.2 40 0.0014 18.3 1.1 15 49-63 66-80 (109)
123 2xnq_A Nuclear polyadenylated 20.2 40 0.0014 18.1 1.1 15 49-63 62-76 (97)
124 1u6f_A Tcubp1, RNA-binding pro 20.0 40 0.0014 19.0 1.1 14 50-63 90-103 (139)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.88 E-value=1.4e-23 Score=117.72 Aligned_cols=46 Identities=54% Similarity=1.035 Sum_probs=42.7
Q ss_pred ceeeEEECCCCeEEEEEecCC-CCceEEeCCCCcHHHHHHHHHHhhc
Q 038709 21 RYLGVRRRPWGRYAAEIRNPR-TKERHWLGTFDAAEEAAIAVYMMIL 66 (67)
Q Consensus 21 g~rGV~~~~~gkW~A~I~~~~-~~k~~~LG~f~t~eeAa~Ayd~aa~ 66 (67)
+|+||+++++|||+|+|++|. +|+++|||+|+|+||||+|||.|++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~ 48 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAF 48 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHH
Confidence 699999888999999999876 4799999999999999999999986
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=97.06 E-value=0.00032 Score=40.21 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=31.1
Q ss_pred CCCCCceeeEEECC-CCeEEEEEecCCCCceE-------EeCCC--CcHHHHHHHHHHh
Q 038709 16 SRQSSRYLGVRRRP-WGRYAAEIRNPRTKERH-------WLGTF--DAAEEAAIAVYMM 64 (67)
Q Consensus 16 ~~~~Sg~rGV~~~~-~gkW~A~I~~~~~~k~~-------~LG~f--~t~eeAa~Ayd~a 64 (67)
...+||++||+|.+ .+.|.|.-.. +|++. .+| | +.+.+||..|...
T Consensus 2 ~~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rrsRtF~~k~yG-f~~e~Ak~~AIef~k~ 57 (77)
T 3igm_B 2 SHMSSGYPGVSWNKRMCAWLAFFYD--GASRRSRTFHPKHFN-MDKEKARLAAVEFMKT 57 (77)
T ss_dssp --CCSSSTTEEEETTTTEEEEEEEE--TTEEEEEEECCTTHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcEEeecCCceEEEEEec--CCeEeeeeechhhcC-cCHHHHHHHHHHHHHH
Confidence 35789999999887 8999999997 56543 244 4 3555555555443
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=94.57 E-value=0.0045 Score=38.98 Aligned_cols=38 Identities=5% Similarity=-0.165 Sum_probs=28.6
Q ss_pred eeeEEECCCCeEEEEEecCCCCceEEeCCCCcHHHHHHHHH
Q 038709 22 YLGVRRRPWGRYAAEIRNPRTKERHWLGTFDAAEEAAIAVY 62 (67)
Q Consensus 22 ~rGV~~~~~gkW~A~I~~~~~~k~~~LG~f~t~eeAa~Ayd 62 (67)
.+||.+...++|.+.|.. + +..+||.|+|++||+++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 356654224678899986 4 6677999999999999864
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=89.80 E-value=0.52 Score=30.81 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=27.3
Q ss_pred eEEECCCCeEEEEEecCCCCceEEeCCCCcHHHHHHHHHH
Q 038709 24 GVRRRPWGRYAAEIRNPRTKERHWLGTFDAAEEAAIAVYM 63 (67)
Q Consensus 24 GV~~~~~gkW~A~I~~~~~~k~~~LG~f~t~eeAa~Ayd~ 63 (67)
||+.++.|.|..+.. .+|+++-+|. |..||......
T Consensus 15 ~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~ 50 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQ 50 (356)
T ss_dssp TEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHH
T ss_pred cceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHH
Confidence 577777889998865 3788999996 88887665443
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=81.36 E-value=2.7 Score=23.66 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=27.0
Q ss_pred EEECCCC--eEEEEEecCCCCceEEeCCCC--cHHHHHHHHHHh
Q 038709 25 VRRRPWG--RYAAEIRNPRTKERHWLGTFD--AAEEAAIAVYMM 64 (67)
Q Consensus 25 V~~~~~g--kW~A~I~~~~~~k~~~LG~f~--t~eeAa~Ayd~a 64 (67)
++..++| .|.-+.+.....+++-||.|+ |++||....+++
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~ 71 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGI 71 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHH
Confidence 4455544 699988863333577899998 477777666554
No 6
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=80.03 E-value=1.9 Score=23.36 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=20.4
Q ss_pred EEEecCCCCceEEeCCCCcHHHHHHHHHH
Q 038709 35 AEIRNPRTKERHWLGTFDAAEEAAIAVYM 63 (67)
Q Consensus 35 A~I~~~~~~k~~~LG~f~t~eeAa~Ayd~ 63 (67)
+.|.....-.++.+|-|.|.+||..+.+.
T Consensus 37 a~i~~~~~~yRV~vGpf~s~~~A~~~~~~ 65 (81)
T 1uta_A 37 SKITTNNGWNRVVIGPVKGKENADSTLNR 65 (81)
T ss_dssp EEEEECSSSEEEEESSCBTTTHHHHHHHH
T ss_pred eEEEeCCcEEEEEECCcCCHHHHHHHHHH
Confidence 44443223468999999999999887664
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=79.77 E-value=0.93 Score=24.35 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=17.6
Q ss_pred CceEEeCCCCcHHHHHHHHHH
Q 038709 43 KERHWLGTFDAAEEAAIAVYM 63 (67)
Q Consensus 43 ~k~~~LG~f~t~eeAa~Ayd~ 63 (67)
-.++.+|.|.|.+||..+.+.
T Consensus 45 ~yRV~vGpf~~~~~A~~~~~~ 65 (79)
T 1x60_A 45 LYKVQIGAFSSKDNADTLAAR 65 (79)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHH
Confidence 368899999999999888764
No 8
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=69.97 E-value=7.3 Score=22.72 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=25.7
Q ss_pred EEECCCC--eEEEEEecCCCCceEEeCCCCc--HHHHHHHHHH
Q 038709 25 VRRRPWG--RYAAEIRNPRTKERHWLGTFDA--AEEAAIAVYM 63 (67)
Q Consensus 25 V~~~~~g--kW~A~I~~~~~~k~~~LG~f~t--~eeAa~Ayd~ 63 (67)
+...++| .|.-+.+.....+++-||.|++ +.+|...-+.
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~ 70 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDE 70 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHH
Confidence 4455644 5998888632335678999984 7777665544
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=64.85 E-value=15 Score=20.15 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=21.1
Q ss_pred CCceeeEEECCCCeEEEEEecCCCCceEE
Q 038709 19 SSRYLGVRRRPWGRYAAEIRNPRTKERHW 47 (67)
Q Consensus 19 ~Sg~rGV~~~~~gkW~A~I~~~~~~k~~~ 47 (67)
.--..|++.++.|+|+.++.+. .|++..
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~-~Gkr~~ 36 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDS-FGEPQF 36 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECT-TSSEEE
T ss_pred CccCCCeEEccCCcEEEEEEcC-CCCEEE
Confidence 3456689989999999999983 566553
No 10
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=49.47 E-value=4.9 Score=23.48 Aligned_cols=19 Identities=32% Similarity=0.246 Sum_probs=15.1
Q ss_pred eEEeCCCCcHHHHHHHHHH
Q 038709 45 RHWLGTFDAAEEAAIAVYM 63 (67)
Q Consensus 45 ~~~LG~f~t~eeAa~Ayd~ 63 (67)
.+..|.|+|.++|..|-..
T Consensus 65 vVlyG~Y~s~~~A~~A~~~ 83 (106)
T 2lfv_A 65 VLVSGVYASKEEAKKAVST 83 (106)
Confidence 4566999999999988653
No 11
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=40.31 E-value=52 Score=19.40 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=23.3
Q ss_pred eEEEEEecCCCCceEEeCCCCcHHHHHHHHHHhh
Q 038709 32 RYAAEIRNPRTKERHWLGTFDAAEEAAIAVYMMI 65 (67)
Q Consensus 32 kW~A~I~~~~~~k~~~LG~f~t~eeAa~Ayd~aa 65 (67)
-|+|.|.. +..-+-++...+.+.|..|...|+
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~ 110 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVA 110 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHH
Confidence 49999994 344445665578888999888765
No 12
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.82 E-value=20 Score=18.86 Aligned_cols=14 Identities=14% Similarity=0.048 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.+.|+|..|.+.
T Consensus 50 ~f~~~~~A~~A~~~ 63 (93)
T 2cqh_A 50 DYPDQNWAIRAIET 63 (93)
T ss_dssp CCSCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 69999999998764
No 13
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=37.89 E-value=14 Score=19.84 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=11.8
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.|+|+|.+|.+.
T Consensus 50 ~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 50 EFSHLQDATRWMEA 63 (91)
T ss_dssp ECSSHHHHHHHHHT
T ss_pred EecCHHHHHHHHHh
Confidence 59999999999753
No 14
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.30 E-value=24 Score=18.81 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=12.5
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.++|+|..|.+.
T Consensus 59 V~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 59 VEFELAEDAAAAIDN 73 (102)
T ss_dssp ECCSSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 379999999999764
No 15
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.02 E-value=14 Score=21.61 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=13.9
Q ss_pred EEeCCCCcHHHHHHHHHH
Q 038709 46 HWLGTFDAAEEAAIAVYM 63 (67)
Q Consensus 46 ~~LG~f~t~eeAa~Ayd~ 63 (67)
.-.=+|++.|+|..|.+.
T Consensus 65 faFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 65 YSFARYRTTEESKRAYVT 82 (114)
T ss_dssp CEEEEESSHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHH
Confidence 333479999999999875
No 16
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=34.30 E-value=27 Score=19.67 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=24.9
Q ss_pred CCceeeEEECCCCeEEEEEecCCCCceEEeCCCCcHHHHHH
Q 038709 19 SSRYLGVRRRPWGRYAAEIRNPRTKERHWLGTFDAAEEAAI 59 (67)
Q Consensus 19 ~Sg~rGV~~~~~gkW~A~I~~~~~~k~~~LG~f~t~eeAa~ 59 (67)
--+|+-|+.- .|||+|-+-.+ ..-----.|..+|.|.+
T Consensus 37 md~frdvw~l-rgkyvafvl~g--e~frrspafsvpesaqr 74 (87)
T 2bn8_A 37 MDSFRDVWML-RGKYVAFVLMG--ESFLRSPAFTVPESAQR 74 (87)
T ss_dssp TTTCTTEEEE-TTEEEEBCCSS--SCCCBCCCBSSHHHHHH
T ss_pred cccchhheee-ccceEEEEEec--hhhccCCccCCcHHHHH
Confidence 3578888643 49999998752 21112367888888765
No 17
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=33.35 E-value=86 Score=19.31 Aligned_cols=35 Identities=6% Similarity=-0.011 Sum_probs=26.9
Q ss_pred CceeeEEECCCCeEEEEEecCCCCceEEeCCCCcHHHHH
Q 038709 20 SRYLGVRRRPWGRYAAEIRNPRTKERHWLGTFDAAEEAA 58 (67)
Q Consensus 20 Sg~rGV~~~~~gkW~A~I~~~~~~k~~~LG~f~t~eeAa 58 (67)
.....|...+.+.|...+. +|..+.||. ++.++.-
T Consensus 130 ~~i~~i~~~~~~~~~l~l~---~g~~V~lG~-~~~~~kl 164 (220)
T 2vh1_A 130 FTLKEAAMTARRSWQLTLN---NDIKLNLGR-GDTMKRL 164 (220)
T ss_dssp CCCCEEEECSSSCEEEECS---SSCEEEEES-SCHHHHH
T ss_pred ceEEEEEECCCCcEEEEEC---CCCEEEECC-cCHHHHH
Confidence 4566788888788988876 799999999 5565554
No 18
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=33.14 E-value=30 Score=18.09 Aligned_cols=15 Identities=33% Similarity=0.228 Sum_probs=12.3
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.++++|..|.+.
T Consensus 45 V~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 45 VTLLNGEQAQNAIQM 59 (88)
T ss_dssp ECCSCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 379999999998764
No 19
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=32.64 E-value=78 Score=19.16 Aligned_cols=31 Identities=19% Similarity=-0.009 Sum_probs=22.5
Q ss_pred eEEEEEecCCCCceEEeCCCCcHHHHHHHHHHhh
Q 038709 32 RYAAEIRNPRTKERHWLGTFDAAEEAAIAVYMMI 65 (67)
Q Consensus 32 kW~A~I~~~~~~k~~~LG~f~t~eeAa~Ayd~aa 65 (67)
-|+|.|.. +..-+-++. .+++.|..|...|+
T Consensus 91 ~wva~Vk~--G~ilfEi~g-~~~~~A~eAlr~a~ 121 (136)
T 3r8s_M 91 YWVALIQP--GKVLYEMDG-VPEELAREAFKLAA 121 (136)
T ss_dssp EEEEEECT--TCEEEEEES-SCHHHHHHHHHHHH
T ss_pred EEEEEECC--CCEEEEEeC-CCHHHHHHHHHHHH
Confidence 39999984 344445555 48999999988775
No 20
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.30 E-value=11 Score=22.17 Aligned_cols=14 Identities=29% Similarity=0.057 Sum_probs=11.8
Q ss_pred CCCCcHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVY 62 (67)
Q Consensus 49 G~f~t~eeAa~Ayd 62 (67)
=.|.++|+|++|..
T Consensus 51 v~F~~~~~A~~AR~ 64 (104)
T 1wey_A 51 INFSNPLSAADARL 64 (104)
T ss_dssp EECSSTTHHHHHHH
T ss_pred EEeCChHHHHHHHH
Confidence 36899999999975
No 21
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=32.15 E-value=31 Score=18.08 Aligned_cols=15 Identities=0% Similarity=-0.084 Sum_probs=11.3
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.++|..|.+.
T Consensus 50 V~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 50 VGVGSEASSKKLMDL 64 (90)
T ss_dssp ECC-CHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 379999999998764
No 22
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.03 E-value=23 Score=18.85 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=12.4
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.++|+|..|.+.
T Consensus 59 V~f~~~~~A~~A~~~ 73 (102)
T 2fc8_A 59 VDFNSEEDAKAAKEA 73 (102)
T ss_dssp EECSSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 369999999998764
No 23
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=31.53 E-value=34 Score=15.27 Aligned_cols=13 Identities=38% Similarity=0.273 Sum_probs=7.7
Q ss_pred CcHHHHHHHHHHh
Q 038709 52 DAAEEAAIAVYMM 64 (67)
Q Consensus 52 ~t~eeAa~Ayd~a 64 (67)
|+.||||.---.|
T Consensus 1 dsIEEaA~RIVda 13 (26)
T 2drn_C 1 DLIEEAASRIVDA 13 (26)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 5678877544333
No 24
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=31.05 E-value=25 Score=18.75 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=11.8
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++|+|..|.+.
T Consensus 43 ~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 43 EFEDPRDAEDAVRG 56 (101)
T ss_dssp ECSSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998764
No 25
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=30.92 E-value=72 Score=17.69 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=24.4
Q ss_pred eEEEEEecCCCCceEEeCCCCcHHHHHHHHHHhh
Q 038709 32 RYAAEIRNPRTKERHWLGTFDAAEEAAIAVYMMI 65 (67)
Q Consensus 32 kW~A~I~~~~~~k~~~LG~f~t~eeAa~Ayd~aa 65 (67)
.--+-|-+....-.+|.|...+.+|...|-+.|.
T Consensus 28 s~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~ 61 (104)
T 1kcq_A 28 NGDCFILDLGNNIHQWCGSNSNRYERLKATQVSK 61 (104)
T ss_dssp TTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3345555533456789999999999998877653
No 26
>3awu_B MELC; tyrosinase, binary complex, type-3 copper, copper transfer, oxidoreductase-metal transport complex; 1.16A {Streptomyces castaneoglobisporus} PDB: 3awt_B 3aws_B 3awv_B 3aww_B 3ax0_B 3awy_B 3awz_B 3awx_B 1wxc_B 1wx2_B 1wx4_B 1wx5_B 1wx3_B 2ahk_B 2ahl_B 2zmx_B 2zmy_B 2zmz_B 2zwd_B 2zwe_B* ...
Probab=30.87 E-value=16 Score=22.51 Aligned_cols=12 Identities=25% Similarity=0.160 Sum_probs=9.5
Q ss_pred CCCCcHHHHHHH
Q 038709 49 GTFDAAEEAAIA 60 (67)
Q Consensus 49 G~f~t~eeAa~A 60 (67)
=.|+|+-+|++|
T Consensus 99 es~pTPl~AARa 110 (134)
T 3awu_B 99 DPVPTPRAAARA 110 (134)
T ss_dssp EEESSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 468998888876
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.79 E-value=25 Score=18.71 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=12.3
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=.|.++|+|..|.+.
T Consensus 59 V~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 59 VTFENIDDAKDAMMA 73 (102)
T ss_dssp EECSSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 369999999998754
No 28
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.56 E-value=26 Score=18.70 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=12.4
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.++|+|..|.+.
T Consensus 58 V~f~~~~~A~~A~~~ 72 (101)
T 2fc9_A 58 IEFASFEDAKEALNS 72 (101)
T ss_dssp EECSSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 369999999999764
No 29
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.36 E-value=21 Score=18.76 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=12.0
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|++.++|..|.+.
T Consensus 49 V~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 49 VHMERAEDAVEAIRG 63 (92)
T ss_dssp EEESCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 368999999998764
No 30
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.23 E-value=20 Score=18.76 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=12.4
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.++|+|..|.+.
T Consensus 62 V~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 62 VYFENVDDAKEAKER 76 (95)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 379999999998764
No 31
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=30.05 E-value=20 Score=19.59 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=11.8
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.++|+|.+|.+.
T Consensus 67 ~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 67 NYVTAKDAERAINT 80 (99)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 58999999998764
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=30.02 E-value=20 Score=18.39 Aligned_cols=14 Identities=21% Similarity=0.100 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.+.++|..|.+.
T Consensus 54 ~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 54 SFFNKWDAENAIQQ 67 (87)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998764
No 33
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=29.92 E-value=20 Score=19.32 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|+++|+|..|.+.
T Consensus 51 ~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 51 HFDERDGAVKAMEE 64 (103)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHH
Confidence 68999999998764
No 34
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=29.85 E-value=21 Score=18.36 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=12.2
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.++|+|..|...
T Consensus 52 V~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 52 VEFENPDEAEKALKH 66 (88)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHH
Confidence 369999999998764
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.38 E-value=22 Score=18.67 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.++|+|..|.+.
T Consensus 54 ~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 54 NFASFDASDAAIEA 67 (96)
T ss_dssp EBSSHHHHHHHHHT
T ss_pred EECCHHHHHHHHHH
Confidence 68999999999763
No 36
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.07 E-value=22 Score=18.64 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|+++|+|..|.+.
T Consensus 48 ~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 48 HIEDKTAAEDAIRN 61 (90)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998764
No 37
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.02 E-value=28 Score=18.51 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=12.4
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.++|..|.+.
T Consensus 55 V~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 55 CEYQDQETALSAMRN 69 (104)
T ss_dssp EECSCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 369999999999764
No 38
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=29.02 E-value=22 Score=18.19 Aligned_cols=14 Identities=43% Similarity=0.515 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.++|+|..|...
T Consensus 55 ~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 55 EFELAEDAAAAIDN 68 (85)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 69999999998753
No 39
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=28.55 E-value=23 Score=19.81 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++++|..|.+.
T Consensus 62 ~f~~~~~A~~Ai~~ 75 (105)
T 2pe8_A 62 EFERVESAIKAVVD 75 (105)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 58999999999865
No 40
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.43 E-value=23 Score=18.56 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++|+|..|...
T Consensus 64 ~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 64 LFLDKDSAQNCTRA 77 (94)
T ss_dssp EESCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998753
No 41
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.32 E-value=23 Score=18.21 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=11.6
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++++|..|.+.
T Consensus 53 ~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 53 DFDSPSAAQKAVTA 66 (85)
T ss_dssp EESCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 78999999988764
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=28.12 E-value=23 Score=17.98 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=.|.++|+|..|.+.
T Consensus 48 V~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 48 VSFTSQDDAQNAMDS 62 (83)
T ss_dssp EEESCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 369999999998764
No 43
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.88 E-value=39 Score=18.60 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=12.1
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|+++|+|..|.+.
T Consensus 58 ~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 58 LFQEESSVQALIDA 71 (114)
T ss_dssp CCSSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHh
Confidence 79999999998764
No 44
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.87 E-value=23 Score=18.49 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=12.0
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.++|..|.+.
T Consensus 48 V~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 48 VHMEKEADAKAAIAQ 62 (90)
T ss_dssp EEESCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 368999999988764
No 45
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.62 E-value=25 Score=18.65 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.++|..|.+.
T Consensus 58 V~f~~~~~A~~A~~~ 72 (97)
T 1why_A 58 IQYESLDAAQAACAK 72 (97)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 368999999988764
No 46
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=27.57 E-value=30 Score=19.29 Aligned_cols=15 Identities=27% Similarity=0.158 Sum_probs=12.4
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.|+|..|.+.
T Consensus 53 V~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 53 ITFENPADAKNAAKD 67 (116)
T ss_dssp EECSSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 469999999999764
No 47
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.52 E-value=31 Score=18.78 Aligned_cols=18 Identities=28% Similarity=0.109 Sum_probs=13.6
Q ss_pred EEeCCCCcHHHHHHHHHH
Q 038709 46 HWLGTFDAAEEAAIAVYM 63 (67)
Q Consensus 46 ~~LG~f~t~eeAa~Ayd~ 63 (67)
.-.=+|.+.++|..|.+.
T Consensus 69 ~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 69 QAFITFPNKEIAWQALHL 86 (115)
T ss_dssp EEEEECSSHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHH
Confidence 333469999999998764
No 48
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.46 E-value=23 Score=19.47 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=12.5
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|+++|+|..|.+.
T Consensus 68 V~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 68 VTYIRSEDALRAIQC 82 (111)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECcHHHHHHHHHH
Confidence 379999999998764
No 49
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=27.42 E-value=26 Score=24.48 Aligned_cols=20 Identities=20% Similarity=-0.014 Sum_probs=15.9
Q ss_pred eCCCCcHHHHHHHHHHhhcC
Q 038709 48 LGTFDAAEEAAIAVYMMILY 67 (67)
Q Consensus 48 LG~f~t~eeAa~Ayd~aa~~ 67 (67)
+-+|+|+|+|+++--+++-|
T Consensus 357 ip~~~~~e~Aa~~~~~l~~~ 376 (397)
T 3ufx_B 357 VYMYPTSIEAAKVTVAMKGG 376 (397)
T ss_dssp EEECSSHHHHHHHHHHSCCS
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 57899999999997665543
No 50
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=27.36 E-value=25 Score=19.53 Aligned_cols=14 Identities=36% Similarity=0.356 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++++|..|...
T Consensus 74 ~f~~~~~A~~A~~~ 87 (104)
T 1jmt_A 74 KFRREEDAEKAVID 87 (104)
T ss_dssp EESCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 59999999999765
No 51
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=27.32 E-value=30 Score=19.25 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++++|..|.+.
T Consensus 65 ~f~~~~~A~~Ai~~ 78 (105)
T 3v4m_A 65 EFTSVFDCQKAMQG 78 (105)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 48999999999875
No 52
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.21 E-value=24 Score=18.77 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=11.8
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++|+|..|.+.
T Consensus 64 ~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 64 EYENESQASQAVMK 77 (100)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 69999999998754
No 53
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.16 E-value=26 Score=19.04 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.|+|..|.+.
T Consensus 67 ~f~~~~~A~~A~~~ 80 (109)
T 1x4a_A 67 EFEDPRDAEDAVYG 80 (109)
T ss_dssp EESCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998764
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.09 E-value=30 Score=18.30 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.++++|..|.+.
T Consensus 58 ~f~~~~~a~~A~~~ 71 (99)
T 2div_A 58 EFADLATAEKCLHK 71 (99)
T ss_dssp ECSCHHHHHHHHHT
T ss_pred EeCCHHHHHHHHHH
Confidence 69999999999763
No 55
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=26.80 E-value=49 Score=17.78 Aligned_cols=16 Identities=31% Similarity=0.273 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHHHh
Q 038709 49 GTFDAAEEAAIAVYMM 64 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~a 64 (67)
..|.|.|||..++...
T Consensus 9 ~~~~t~eea~~~F~~L 24 (71)
T 1uzc_A 9 YTWNTKEEAKQAFKEL 24 (71)
T ss_dssp CCCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4699999999998653
No 56
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.59 E-value=27 Score=18.27 Aligned_cols=15 Identities=33% Similarity=0.153 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=.|.+.++|..|.+.
T Consensus 52 V~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 52 ITFSDSECARRALEQ 66 (95)
T ss_dssp EEESCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 368999999998764
No 57
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.59 E-value=25 Score=18.56 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=11.8
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++|+|..|.+.
T Consensus 63 ~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 63 AFESRDEATAAVID 76 (98)
T ss_dssp EESCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998764
No 58
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.48 E-value=27 Score=18.69 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++|+|..|.+.
T Consensus 61 ~f~~~~~a~~A~~~ 74 (103)
T 2cqi_A 61 EFYEHRDAAAALAA 74 (103)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998764
No 59
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=26.40 E-value=40 Score=19.68 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHHhh
Q 038709 49 GTFDAAEEAAIAVYMMI 65 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~aa 65 (67)
..|+|+|++..+|.+|-
T Consensus 5 ~~~~~~~~~~~af~~A~ 21 (144)
T 3gwr_A 5 PVFPTPEAAEDAFYAAF 21 (144)
T ss_dssp CCCSSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH
Confidence 46999999999988763
No 60
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.40 E-value=27 Score=18.62 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=11.6
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.|+|..|.+.
T Consensus 58 ~f~~~~~A~~Ai~~ 71 (96)
T 2dgx_A 58 QMENLQDAIGAVNS 71 (96)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 58999999988764
No 61
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=26.33 E-value=33 Score=18.74 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=12.2
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.|+|..|.+.
T Consensus 73 ~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 73 SYDNPVSAQAAIQS 86 (115)
T ss_dssp ECSSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 79999999999864
No 62
>4esq_A Serine/threonine protein kinase; receptor kinase, membrane, transferase; HET: BTB; 1.70A {Mycobacterium tuberculosis}
Probab=26.03 E-value=33 Score=21.30 Aligned_cols=19 Identities=21% Similarity=0.113 Sum_probs=15.7
Q ss_pred EeCCCCcHHHHHHHHHHhh
Q 038709 47 WLGTFDAAEEAAIAVYMMI 65 (67)
Q Consensus 47 ~LG~f~t~eeAa~Ayd~aa 65 (67)
-++.|+|+++|..+|+..+
T Consensus 89 aVv~fps~~~A~~~f~~~~ 107 (194)
T 4esq_A 89 AVVAFPTADKARAFVQTSA 107 (194)
T ss_dssp EEEECSSHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHH
Confidence 3578999999999998753
No 63
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=26.01 E-value=26 Score=18.40 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=11.8
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.+.++|..|.+.
T Consensus 57 ~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 57 IFKEVSSATNALRS 70 (97)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHH
Confidence 68999999998764
No 64
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=25.97 E-value=26 Score=18.75 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.++|..|.+.
T Consensus 62 ~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 62 KFSSHTEAQAAIHA 75 (105)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHH
Confidence 69999999998764
No 65
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.95 E-value=26 Score=18.53 Aligned_cols=15 Identities=33% Similarity=0.062 Sum_probs=12.2
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.|+|..|.+.
T Consensus 55 V~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 55 VTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 468999999998754
No 66
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.89 E-value=25 Score=17.61 Aligned_cols=14 Identities=14% Similarity=0.040 Sum_probs=11.2
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++++|..|...
T Consensus 48 ~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 48 TFMDQAGVDKVLAQ 61 (77)
T ss_dssp CCCCTTHHHHHHHT
T ss_pred EEcCHHHHHHHHHh
Confidence 68899999888753
No 67
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=25.86 E-value=27 Score=19.47 Aligned_cols=15 Identities=20% Similarity=0.062 Sum_probs=12.3
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|++.|+|..|.+.
T Consensus 53 V~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 53 VLFTSTRGAKETVKN 67 (110)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 369999999998764
No 68
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=25.83 E-value=35 Score=18.13 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.3
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=.|+|.++|..|.+.
T Consensus 68 V~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 68 IKYDTHEQAAVCIVA 82 (101)
T ss_dssp EECSSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 479999999998764
No 69
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=25.60 E-value=27 Score=18.27 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=11.6
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.++|+|..|.+.
T Consensus 63 ~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 63 AFESRDEATAAVID 76 (95)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999988764
No 70
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.56 E-value=31 Score=18.78 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.|+|..|.+.
T Consensus 71 ~f~~~~~A~~Ai~~ 84 (113)
T 2cpe_A 71 SYEDPPTAKAAVEW 84 (113)
T ss_dssp EBSSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 69999999998764
No 71
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=25.46 E-value=28 Score=19.35 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=11.6
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|++.|+|..|.+.
T Consensus 57 ~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 57 EFVRKEDMTYAVRK 70 (115)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999988764
No 72
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.38 E-value=27 Score=18.68 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.++|+|..|...
T Consensus 63 ~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 63 EFLSEEDADYAIKI 76 (105)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998764
No 73
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.28 E-value=28 Score=18.40 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.++|..|...
T Consensus 56 ~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 56 EYKKPEQAQKALKQ 69 (98)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998764
No 74
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=25.18 E-value=28 Score=18.09 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.++|..|.+.
T Consensus 53 V~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 53 VKFESPEVAERACRM 67 (92)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 368999999988764
No 75
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=25.17 E-value=29 Score=18.31 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=11.8
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|++.++|..|.+.
T Consensus 50 ~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 50 EFRDLESSASAVRN 63 (96)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998764
No 76
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=25.00 E-value=84 Score=16.55 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=27.3
Q ss_pred EECCCCeEEEEEecCCCCceEEeCC-CCcHHHHHHHHH
Q 038709 26 RRRPWGRYAAEIRNPRTKERHWLGT-FDAAEEAAIAVY 62 (67)
Q Consensus 26 ~~~~~gkW~A~I~~~~~~k~~~LG~-f~t~eeAa~Ayd 62 (67)
.....|+|.=++.. .||.-|.-+- |.|..+|..+-+
T Consensus 6 ~~~~~G~frfrLka-~NGevI~sSe~Y~sk~~a~~gI~ 42 (64)
T 3bid_A 6 YKDAKGEYRWRLKA-ANHEIIAQGEGYTSKQNCQHAVD 42 (64)
T ss_dssp EECTTSCEEEEEEC-TTSCEEEECCCBSCHHHHHHHHH
T ss_pred EECCCCCEEEEEEe-CCCCEEEECCCcCCHHHHHHHHH
Confidence 34458999999997 4888876665 999888877654
No 77
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=24.74 E-value=28 Score=20.04 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=12.1
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++|+|..|...
T Consensus 77 ~F~~~e~A~~Ai~~ 90 (118)
T 3ue2_A 77 EFSIASETHKAIQA 90 (118)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 49999999999875
No 78
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.65 E-value=29 Score=18.60 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=12.4
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.|+|..|...
T Consensus 63 V~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 63 VDFITKQDAKKAFNA 77 (107)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 369999999998765
No 79
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.64 E-value=35 Score=17.73 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=11.2
Q ss_pred CCCcHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVY 62 (67)
Q Consensus 50 ~f~t~eeAa~Ayd 62 (67)
.|+++++|..|..
T Consensus 56 ~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 56 DFSNEEEVKQALK 68 (91)
T ss_dssp ECSSHHHHHHHHH
T ss_pred EECCHHHHHHHHH
Confidence 6999999998865
No 80
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=24.41 E-value=29 Score=18.41 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|++.++|..|.+.
T Consensus 51 ~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 51 QFDNPQSVRDAIEC 64 (96)
T ss_dssp EESCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998764
No 81
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.38 E-value=31 Score=18.32 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.++|..|.+.
T Consensus 56 V~f~~~~~A~~A~~~ 70 (99)
T 2cpd_A 56 VHFSNREDAVEAMKA 70 (99)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHH
Confidence 368999999998764
No 82
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.36 E-value=29 Score=18.52 Aligned_cols=15 Identities=27% Similarity=0.189 Sum_probs=12.3
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.|+|..|.+.
T Consensus 60 V~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 60 VTFENSADADRAREK 74 (103)
T ss_dssp EEESCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 369999999998764
No 83
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.21 E-value=37 Score=19.51 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHHh
Q 038709 50 TFDAAEEAAIAVYMM 64 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~a 64 (67)
.|++.|+|.+|.++.
T Consensus 52 ~F~~~esA~~A~~~l 66 (96)
T 2diu_A 52 RFINQDSAERAQKRM 66 (96)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHh
Confidence 589999999998753
No 84
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=24.17 E-value=31 Score=18.45 Aligned_cols=15 Identities=27% Similarity=0.016 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.|+|..|.+.
T Consensus 60 V~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 60 LTYCERESALKAQSA 74 (106)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 368999999998764
No 85
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=24.17 E-value=29 Score=19.22 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|++.|+|..|.+.
T Consensus 51 ~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 51 HFETQEAAERAIEK 64 (115)
T ss_dssp EESCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 69999999998764
No 86
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.15 E-value=39 Score=18.61 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=12.3
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.++|..|.+.
T Consensus 69 V~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 69 VSFRDPEEADYCIQT 83 (112)
T ss_dssp EECSCHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 359999999999764
No 87
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=24.11 E-value=27 Score=19.15 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.++|+|..|.+.
T Consensus 59 ~f~~~~~A~~Ai~~ 72 (95)
T 2lkz_A 59 QLSSAMDASQLLQI 72 (95)
T ss_dssp ECSSSHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 58999999988765
No 88
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=24.04 E-value=30 Score=18.16 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.++++|..|.+.
T Consensus 59 ~f~~~~~a~~A~~~ 72 (96)
T 1fjc_A 59 EFKSEADAEKNLEE 72 (96)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 79999999999764
No 89
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.93 E-value=27 Score=18.56 Aligned_cols=15 Identities=20% Similarity=0.027 Sum_probs=11.9
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.++|..|.+.
T Consensus 56 V~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 56 IRLETRTLAEIAKVE 70 (99)
T ss_dssp EECSSSHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 368999999988754
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=23.69 E-value=39 Score=19.05 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=15.2
Q ss_pred ceEEeCCCCcHHHHHHHHHH
Q 038709 44 ERHWLGTFDAAEEAAIAVYM 63 (67)
Q Consensus 44 k~~~LG~f~t~eeAa~Ayd~ 63 (67)
+-.-+-.|.|+|||..|-++
T Consensus 43 kGfaFVey~~~~eA~~Ai~~ 62 (89)
T 2wbr_A 43 QGIALCKYTTREEANKAQMA 62 (89)
T ss_dssp TTEEEEEESSHHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHH
Confidence 33455679999999999764
No 91
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=23.62 E-value=22 Score=18.26 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=11.6
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.++++|..|-+.
T Consensus 53 ~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 53 EYASPAHAVDAVKN 66 (81)
T ss_dssp EESSHHHHHHHHTT
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998653
No 92
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.56 E-value=31 Score=18.39 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.++|..|.+.
T Consensus 57 ~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 57 KFTDELEQKRALTE 70 (104)
T ss_dssp EESCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 69999999998764
No 93
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=23.37 E-value=51 Score=18.78 Aligned_cols=14 Identities=21% Similarity=0.083 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++|+|..|.+.
T Consensus 61 ~f~~~e~A~~Ai~~ 74 (114)
T 3s6e_A 61 KCPSIAAAIAAVNA 74 (114)
T ss_dssp ECSSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 49999999999875
No 94
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.34 E-value=32 Score=18.27 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|++.++|..|.+.
T Consensus 55 ~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 55 TYEKMESADQAVAE 68 (97)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 79999999998764
No 95
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=23.29 E-value=33 Score=17.08 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=10.3
Q ss_pred CCCcHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVY 62 (67)
Q Consensus 50 ~f~t~eeAa~Ayd 62 (67)
+|.++|+|..|..
T Consensus 47 ~f~~~~~a~~a~~ 59 (75)
T 2mss_A 47 TFESEDIVEKVCE 59 (75)
T ss_dssp ECSCHHHHHHHHS
T ss_pred EECCHHHHHHHHH
Confidence 6899999888753
No 96
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.25 E-value=42 Score=17.74 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=11.6
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.++|..|...
T Consensus 62 ~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 62 HYPDSAAAQQAVSC 75 (97)
T ss_dssp ECSSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 69999999988754
No 97
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=23.01 E-value=32 Score=18.76 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=12.3
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.|+|..|.+.
T Consensus 62 V~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 62 VSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 369999999998764
No 98
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=22.89 E-value=23 Score=17.67 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=10.9
Q ss_pred CCCcHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVY 62 (67)
Q Consensus 50 ~f~t~eeAa~Ayd 62 (67)
+|.++++|..|.+
T Consensus 47 ~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 47 TFKEEEPVKKIME 59 (75)
T ss_dssp ECSSSHHHHHHHT
T ss_pred EECCHHHHHHHHH
Confidence 5899999998865
No 99
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.88 E-value=33 Score=18.33 Aligned_cols=16 Identities=38% Similarity=0.358 Sum_probs=12.6
Q ss_pred eCCCCcHHHHHHHHHH
Q 038709 48 LGTFDAAEEAAIAVYM 63 (67)
Q Consensus 48 LG~f~t~eeAa~Ayd~ 63 (67)
.=+|.+.|+|..|...
T Consensus 59 fV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 59 FVCFSSPEEATKAVTE 74 (103)
T ss_dssp EEEESSHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHH
Confidence 3469999999998764
No 100
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=22.66 E-value=33 Score=18.39 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.|+|..|...
T Consensus 75 V~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 75 VHFERKADALKAMKQ 89 (107)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 369999999988764
No 101
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=22.41 E-value=83 Score=17.84 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=21.9
Q ss_pred EEEecCCCCceEEeCCCCcHHHHHHHHHHh
Q 038709 35 AEIRNPRTKERHWLGTFDAAEEAAIAVYMM 64 (67)
Q Consensus 35 A~I~~~~~~k~~~LG~f~t~eeAa~Ayd~a 64 (67)
+-|-+....-.+|.|...+.+|-..|-+.|
T Consensus 41 ~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a 70 (114)
T 1svq_A 41 CFLLDAGLTIYQFNGSKSSPQEKNKAAEVA 70 (114)
T ss_dssp EEEEEETTEEEECCCTTCCHHHHHHHHHHH
T ss_pred eEEEecCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 444443245678999999999998887765
No 102
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=22.37 E-value=41 Score=17.80 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.+.|+|..|.+.
T Consensus 69 ~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 69 SFDDPPSAKAAIDW 82 (99)
T ss_dssp EBSSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999988764
No 103
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=22.30 E-value=40 Score=17.08 Aligned_cols=14 Identities=29% Similarity=0.237 Sum_probs=10.1
Q ss_pred CCCCcHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVY 62 (67)
Q Consensus 49 G~f~t~eeAa~Ayd 62 (67)
-.|+|.+||....+
T Consensus 36 K~F~t~~eA~~~l~ 49 (53)
T 3bsu_A 36 KKFATEDEAWAFVR 49 (53)
T ss_dssp EEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 45888888876554
No 104
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=22.29 E-value=42 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.6
Q ss_pred EEeCCCCcHHHHHHHHHHh
Q 038709 46 HWLGTFDAAEEAAIAVYMM 64 (67)
Q Consensus 46 ~~LG~f~t~eeAa~Ayd~a 64 (67)
.-.-+|+|+++|..++++.
T Consensus 38 ~~~~~f~~~~~a~~~~~~l 56 (362)
T 2ra8_A 38 TQVKNFSSAGEAEKAAGKL 56 (362)
T ss_dssp EEEEECSSHHHHHHHHHHH
T ss_pred EEeeeCCCHHHHHHHHHHH
Confidence 4456799999999999864
No 105
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.23 E-value=34 Score=18.24 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.++|..|.+.
T Consensus 63 ~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 63 SFHRREDAARAIAG 76 (103)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 69999999998764
No 106
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.17 E-value=34 Score=18.62 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=12.0
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.|+|..|.+.
T Consensus 55 V~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 55 VEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 378999999988764
No 107
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.10 E-value=32 Score=17.54 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=12.2
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.++++|..|...
T Consensus 53 V~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 53 IQFATRQAAEVAAEK 67 (85)
T ss_dssp EEESSHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHH
Confidence 468999999998763
No 108
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=21.72 E-value=36 Score=18.21 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.++|..|...
T Consensus 71 ~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 71 EYETYKEAQAAMEG 84 (106)
T ss_dssp EESCHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 79999999998764
No 109
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=21.64 E-value=36 Score=18.35 Aligned_cols=14 Identities=7% Similarity=0.048 Sum_probs=11.7
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.++++|..|...
T Consensus 60 ~f~~~~~A~~Ai~~ 73 (100)
T 3ns6_A 60 ECGSMNDAKKIIKS 73 (100)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 69999999998764
No 110
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.59 E-value=35 Score=18.89 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=13.6
Q ss_pred EEeCCCCcHHHHHHHHHH
Q 038709 46 HWLGTFDAAEEAAIAVYM 63 (67)
Q Consensus 46 ~~LG~f~t~eeAa~Ayd~ 63 (67)
.-.=.|++.|+|..|.+.
T Consensus 53 ~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 53 QAFLELATEEAAITMVNY 70 (101)
T ss_dssp EEEEEESSHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHH
Confidence 333479999999998874
No 111
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=21.41 E-value=33 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=11.0
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.++|..|.+.
T Consensus 68 ~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 68 QYSNERHARAAVLG 81 (110)
T ss_dssp ECSSSHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68888888888754
No 112
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.28 E-value=38 Score=18.68 Aligned_cols=15 Identities=27% Similarity=-0.002 Sum_probs=12.3
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.++|..|.+.
T Consensus 51 V~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 51 VEFLEPLEARKAFRH 65 (111)
T ss_dssp EEESCHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHH
Confidence 368999999998764
No 113
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=21.02 E-value=49 Score=18.18 Aligned_cols=15 Identities=40% Similarity=0.357 Sum_probs=11.9
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.++|..|.+.
T Consensus 70 V~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 70 VEFEEAESAAKAIEE 84 (108)
T ss_dssp EECSSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 368999999988764
No 114
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=20.88 E-value=39 Score=18.69 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.++++|..|...
T Consensus 70 ~f~~~~~a~~A~~~ 83 (126)
T 3ex7_B 70 EYETYKEAQAAMEG 83 (126)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 69999999998764
No 115
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=20.86 E-value=31 Score=18.05 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=11.6
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
.|.++++|..|.+.
T Consensus 63 ~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 63 CFKHPESVSYAIAL 76 (95)
T ss_dssp EESSTHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999988764
No 116
>1vqs_A Hypothetical protein AGR_L_1239; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: MSE SO4; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.4.13 PDB: 2ap6_A
Probab=20.61 E-value=1e+02 Score=17.49 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=25.7
Q ss_pred CeEEEEEecCCCCceEEeCCCCcHHHHHHHHHHh
Q 038709 31 GRYAAEIRNPRTKERHWLGTFDAAEEAAIAVYMM 64 (67)
Q Consensus 31 gkW~A~I~~~~~~k~~~LG~f~t~eeAa~Ayd~a 64 (67)
|-|.+++.. ...-++|=.|+|.++-...++++
T Consensus 51 G~~~~~~G~--ln~v~~Lw~y~sl~~r~~~r~a~ 82 (116)
T 1vqs_A 51 GYFFSEIGP--INEIVHIWAFSSLDDRAERRARL 82 (116)
T ss_dssp EEEEEEESS--SSEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEcccCC--CcEEEEEEecCCHHHHHHHHHHH
Confidence 678899885 46788999999999888777653
No 117
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=20.43 E-value=31 Score=17.67 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=10.8
Q ss_pred CCCCcHHHHHHHH
Q 038709 49 GTFDAAEEAAIAV 61 (67)
Q Consensus 49 G~f~t~eeAa~Ay 61 (67)
=+|.++|+|..|.
T Consensus 58 V~f~~~~~a~~A~ 70 (87)
T 2hzc_A 58 LEFRSVDETTQAM 70 (87)
T ss_dssp EEESSHHHHHHHG
T ss_pred EEcCCHHHHHHHH
Confidence 3689999999886
No 118
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.39 E-value=35 Score=18.69 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=11.8
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.|+|..|.+.
T Consensus 75 ~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 75 TFENSADADRAREK 88 (109)
T ss_dssp ECCCSHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 79999999988764
No 119
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.38 E-value=47 Score=19.14 Aligned_cols=13 Identities=31% Similarity=0.222 Sum_probs=11.5
Q ss_pred CCCcHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVY 62 (67)
Q Consensus 50 ~f~t~eeAa~Ayd 62 (67)
.|.+.|+|..|.+
T Consensus 74 ~F~~~~~A~~Al~ 86 (123)
T 2dha_A 74 LFACEEYAQNALR 86 (123)
T ss_dssp CCSSHHHHHHHHT
T ss_pred EECCHHHHHHHHH
Confidence 7999999999875
No 120
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.36 E-value=41 Score=18.04 Aligned_cols=14 Identities=21% Similarity=0.180 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.++|..|.+.
T Consensus 63 ~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 63 QFMTQEAAQKCLAA 76 (111)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 68999999998765
No 121
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.29 E-value=37 Score=17.97 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=11.7
Q ss_pred CCCCcHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVY 62 (67)
Q Consensus 49 G~f~t~eeAa~Ayd 62 (67)
=+|.+.++|..|.+
T Consensus 57 V~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 57 ITFEDEQSVDQAVN 70 (99)
T ss_dssp EEESSHHHHHHHHH
T ss_pred EEECCHHHHHHHHH
Confidence 36999999999875
No 122
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.22 E-value=40 Score=18.27 Aligned_cols=15 Identities=33% Similarity=0.295 Sum_probs=12.0
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|.+.++|..|...
T Consensus 66 V~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 66 VRFSTHESAAHAIVS 80 (109)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 368999999988754
No 123
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=20.19 E-value=40 Score=18.08 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHHHH
Q 038709 49 GTFDAAEEAAIAVYM 63 (67)
Q Consensus 49 G~f~t~eeAa~Ayd~ 63 (67)
=+|++.++|..|.+.
T Consensus 62 V~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 62 IQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEESSHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHH
Confidence 368999999988764
No 124
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=20.01 E-value=40 Score=19.03 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=12.1
Q ss_pred CCCcHHHHHHHHHH
Q 038709 50 TFDAAEEAAIAVYM 63 (67)
Q Consensus 50 ~f~t~eeAa~Ayd~ 63 (67)
+|.+.|+|..|.+.
T Consensus 90 ~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 90 KFQSGSSAQQAIAG 103 (139)
T ss_dssp EESSHHHHHHHHHH
T ss_pred EECCHHHHHHHHHH
Confidence 79999999998764
Done!