BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038710
         (642 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ETP|B Chain B, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
           Fused To A Synthetic Heterodimeric Coiled Coil
          Length = 333

 Score = 32.0 bits (71), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 242 EFIYGMKGAYPYVVDTSDCIFGRQGQFYKDMDFSAALNCERRPTIIDLPPTRANDTNLGR 301
           E +Y      P++  + DC F ++   Y DM    ALN ++   +I L  T         
Sbjct: 91  EHVYKFNRVIPHLKVSEDCFFTQEYSVYHDM----ALNQKKNFNLISLSTTPHGSLRESL 146

Query: 302 VPFCCRNGTI 311
           + F     TI
Sbjct: 147 IKFLAEKDTI 156


>pdb|4F3V|A Chain A, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
           From Esx-1 Secretion System Of Mycobacterium
           Tuberculosis
 pdb|4F3V|B Chain B, Crystal Structure Of N-Terminal Domain Of Ecca1 Atpase
           From Esx-1 Secretion System Of Mycobacterium
           Tuberculosis
          Length = 282

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 467 KRLSVPNPLPCGDNCGVRINWHLLSDYR--GGWTARITLLNWGET 509
           +RL+  N  P G+ C   I W+L    R  G  +A + LL W +T
Sbjct: 192 RRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236


>pdb|2C45|A Chain A, Native Precursor Of Pyruvoyl Dependent Aspartate
           Decarboxylase
 pdb|2C45|B Chain B, Native Precursor Of Pyruvoyl Dependent Aspartate
           Decarboxylase
 pdb|2C45|C Chain C, Native Precursor Of Pyruvoyl Dependent Aspartate
           Decarboxylase
 pdb|2C45|D Chain D, Native Precursor Of Pyruvoyl Dependent Aspartate
           Decarboxylase
 pdb|2C45|E Chain E, Native Precursor Of Pyruvoyl Dependent Aspartate
           Decarboxylase
 pdb|2C45|F Chain F, Native Precursor Of Pyruvoyl Dependent Aspartate
           Decarboxylase
 pdb|2C45|G Chain G, Native Precursor Of Pyruvoyl Dependent Aspartate
           Decarboxylase
 pdb|2C45|H Chain H, Native Precursor Of Pyruvoyl Dependent Aspartate
           Decarboxylase
          Length = 139

 Score = 29.6 bits (65), Expect = 5.6,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 5/91 (5%)

Query: 198 GDITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYVVDT 257
           G +TI  D+M +++     QV+I + +   RL  + ++GE  R   + G+ GA  ++V  
Sbjct: 24  GSVTIDADLMDAADLLEGEQVTIVDIDNGARLVTYAITGE--RGSGVIGINGAAAHLVHP 81

Query: 258 SDCIFGRQGQFYKDMDFSAALNCERRPTIID 288
            D +       Y  MD + A   + R   +D
Sbjct: 82  GDLVILIA---YATMDDARARTYQPRIVFVD 109


>pdb|3LIC|A Chain A, Crystal Structure Of The Extracellular Domain Of The
           Putative Histidine Kinase Sohk1s-Z6
          Length = 274

 Score = 29.6 bits (65), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 9/50 (18%)

Query: 548 QGISDFNNLAAEKDDA-NPRKHPRV--------PGYQQSVILFTKKTTPN 588
           QG+SDF  L A+KDD  NP K   V        P +  S I F   T PN
Sbjct: 37  QGLSDFIGLLADKDDINNPEKLKTVLTNRIQRNPDFFGSAIAFKPNTFPN 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,968,661
Number of Sequences: 62578
Number of extensions: 805861
Number of successful extensions: 1372
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 4
length of query: 642
length of database: 14,973,337
effective HSP length: 105
effective length of query: 537
effective length of database: 8,402,647
effective search space: 4512221439
effective search space used: 4512221439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)