Query 038710
Match_columns 642
No_of_seqs 125 out of 152
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 02:35:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04833 COBRA: COBRA-like pro 100.0 8.6E-79 1.9E-83 576.7 17.7 167 214-397 1-169 (169)
2 PF00553 CBM_2: Cellulose bind 95.1 0.09 2E-06 46.4 7.5 53 201-254 2-54 (101)
3 PF00553 CBM_2: Cellulose bind 85.9 1.6 3.4E-05 38.7 5.1 40 67-106 13-52 (101)
4 smart00637 CBD_II CBD_II domai 73.6 5.9 0.00013 34.1 4.5 39 68-106 7-45 (92)
5 smart00637 CBD_II CBD_II domai 68.7 10 0.00023 32.6 5.0 43 211-254 5-47 (92)
6 PF04833 COBRA: COBRA-like pro 61.2 27 0.00058 35.1 6.8 42 69-110 1-45 (169)
7 PF10563 CdCA1: Cadmium carbon 38.8 6.1 0.00013 40.8 -1.5 18 479-496 5-22 (218)
8 PF03128 CXCXC: CXCXC repeat; 37.5 16 0.00035 22.9 0.7 8 421-428 7-14 (14)
9 COG5341 Uncharacterized protei 29.7 49 0.0011 32.1 2.9 40 569-609 43-82 (132)
10 PF07131 DUF1382: Protein of u 24.4 30 0.00064 29.7 0.4 22 127-148 5-26 (61)
11 PF08140 Cuticle_1: Crustacean 23.5 67 0.0015 25.6 2.2 21 90-110 13-36 (40)
12 PF03785 Peptidase_C25_C: Pept 22.5 37 0.0008 30.6 0.7 64 163-227 7-76 (81)
13 PF03173 CHB_HEX: Putative car 20.2 1.4E+02 0.003 29.6 4.1 86 65-166 28-115 (164)
No 1
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []. The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
Probab=100.00 E-value=8.6e-79 Score=576.67 Aligned_cols=167 Identities=46% Similarity=0.905 Sum_probs=159.5
Q ss_pred eEEEEEEecccccCCCC--CceeeeeEcCCeeEEEecCceeeeecCCCccccccCcccccCCCCccccccCCCeeeeCCC
Q 038710 214 YWAQVSISNHNTLRRLD--NWKLSGEWMRDEFIYGMKGAYPYVVDTSDCIFGRQGQFYKDMDFSAALNCERRPTIIDLPP 291 (642)
Q Consensus 214 Y~A~VTi~N~q~yr~Id--gW~L~W~W~~~E~IwsM~GA~~t~~dqgdCs~g~~g~~yk~~dfs~ph~C~k~P~IvDLpP 291 (642)
|+|+|||+|||+||||| ||+|||+|+|+||||+|+|||++ |||||+ +|||++ ++||||+|+|+||||||
T Consensus 1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~t--dqgdCs-----~~~~~~--~~ph~C~k~P~IvDLpp 71 (169)
T PF04833_consen 1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTT--DQGDCS-----KFYKDG--DFPHCCKKRPTIVDLPP 71 (169)
T ss_pred CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceec--cCCccc-----ccccCC--CCCcccCCCCEEEeCCC
Confidence 99999999999999999 59999999999999999999999 599995 477775 56789999999999999
Q ss_pred CCCCCccCCCcCccccCCeecCCCCCCCCCcceEEEEEeecCCCCCCCccCCCcCeEEeecCCCCCCCcccCCCeeeCCC
Q 038710 292 TRANDTNLGRVPFCCRNGTILPPNMDPSKSKSIFQMQVYKMPPDLNKSELIPPQKWKIIGGTPNPDNQYQCGPPVRVSPS 371 (642)
Q Consensus 292 ~~~~d~q~g~i~nCCr~Gvl~~~~qDps~S~SaFQm~Vgk~p~~~Nrt~v~pP~Nf~l~~~~pgPg~~YtCG~p~~V~PT 371 (642)
|++||+|+ +||||||||+||+|||+||+|+|||+||++||++|+++++||+||+|+| |||| |+||+|++|+||
T Consensus 72 ~~~~n~qi---~nCCrgG~l~~~~~Dps~s~S~FQm~Vg~~pp~~~~~~~~~P~nf~l~~--~~pg--YtCg~~~~V~pT 144 (169)
T PF04833_consen 72 GTPYNQQI---GNCCRGGVLSSWAQDPSKSVSAFQMSVGKAPPGTNNTTVKPPQNFTLGG--PGPG--YTCGPPKRVSPT 144 (169)
T ss_pred CCCCcccc---ccccCCCEECCcccChhhCceEEEEEEeEeeccCCCceecCCcceEEcC--CCCC--cCCCCcceeCCc
Confidence 99999995 5899999999999999999999999999999999888899999999999 9999 999999999999
Q ss_pred cccCCCCCceeeeEeEEeeeeEeeec
Q 038710 372 TFPDSSGLPTESRSIASWQVVCNITR 397 (642)
Q Consensus 372 ~f~dp~gl~r~tqAl~TWqVtCnySq 397 (642)
+|+|+|| ||.|||||||||||||||
T Consensus 145 ~f~~~~g-~r~t~A~~TWqvtC~ysq 169 (169)
T PF04833_consen 145 VFPDPDG-RRTTQALMTWQVTCNYSQ 169 (169)
T ss_pred eeeCCCC-CEEEEEEEEEeEEEEeeC
Confidence 9999999 799999999999999997
No 2
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=95.11 E-value=0.09 Score=46.42 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=47.7
Q ss_pred EEEEEEEEeeCCCeEEEEEEecccccCCCCCceeeeeEcCCeeEEEecCceeee
Q 038710 201 TIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYV 254 (642)
Q Consensus 201 TI~wDV~q~~~~~Y~A~VTi~N~q~yr~IdgW~L~W~W~~~E~IwsM~GA~~t~ 254 (642)
+++|.|.+--++||.+.|+|.|... ..|++|+|.|+-..++-|-++.+|..+.
T Consensus 2 tv~~~v~~~W~~Gf~~~v~v~N~~~-~~i~~W~v~~~~~~~~~i~~~Wna~~s~ 54 (101)
T PF00553_consen 2 TVTYTVTNSWGGGFQGEVTVTNNGS-SPINGWTVTFTFPSGQTITSSWNATVSQ 54 (101)
T ss_dssp EEEEEEEEESSSEEEEEEEEEESSS-STEESEEEEEEESTTEEEEEEESCEEEE
T ss_pred EEEEEEecccCCCeEEEEEEEECCC-CccCCEEEEEEeCCCCEEeeeeccEEEe
Confidence 6889999888999999999999887 5788999999999889998999998764
No 3
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=85.86 E-value=1.6 Score=38.70 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=34.2
Q ss_pred eeeEeeeEeeccCcccccceEEEeeeeeceEEEeeCceee
Q 038710 67 YRFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVL 106 (642)
Q Consensus 67 y~F~a~~tv~N~g~~~lk~W~~~v~F~h~EiLVsa~gavl 106 (642)
-.|.+.++|.|+|.+.+++|+|-+.|.+.+-|.++=+|-+
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~ 52 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATV 52 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEE
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEE
Confidence 4699999999999999999999999997777777754443
No 4
>smart00637 CBD_II CBD_II domain.
Probab=73.59 E-value=5.9 Score=34.14 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=32.8
Q ss_pred eeEeeeEeeccCcccccceEEEeeeeeceEEEeeCceee
Q 038710 68 RFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVL 106 (642)
Q Consensus 68 ~F~a~~tv~N~g~~~lk~W~~~v~F~h~EiLVsa~gavl 106 (642)
.|.++++|.|+|...+.+|++-+-|.+.+-+.+.-++-+
T Consensus 7 G~~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~ 45 (92)
T smart00637 7 GFTANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATV 45 (92)
T ss_pred CEEEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEE
Confidence 389999999999999999999999988766666655554
No 5
>smart00637 CBD_II CBD_II domain.
Probab=68.72 E-value=10 Score=32.60 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=35.4
Q ss_pred CCCeEEEEEEecccccCCCCCceeeeeEcCCeeEEEecCceeee
Q 038710 211 ETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYV 254 (642)
Q Consensus 211 ~~~Y~A~VTi~N~q~yr~IdgW~L~W~W~~~E~IwsM~GA~~t~ 254 (642)
.+||.+.|+|.|..-. .|++|.+.|+...++-|-++..|....
T Consensus 5 ~~G~~~~v~vtN~~~~-~~~~W~v~~~~~~~~~i~~~Wn~~~~~ 47 (92)
T smart00637 5 GSGFTANVTVTNTGSS-AINGWTVTFDLPGGQTVTNSWNATVSQ 47 (92)
T ss_pred CCCEEEEEEEEeCCCC-cccCeEEEEEcCCCcEEeeeEEEEEEe
Confidence 4699999999997553 488999999998888887888887654
No 6
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []. The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
Probab=61.20 E-value=27 Score=35.07 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=36.4
Q ss_pred eEeeeEeecc-Ccccccc--eEEEeeeeeceEEEeeCceeeecCC
Q 038710 69 FESTVTILNN-GLNELKS--WRVFVGFQHNELLVFATNVVLADVT 110 (642)
Q Consensus 69 F~a~~tv~N~-g~~~lk~--W~~~v~F~h~EiLVsa~gavl~dg~ 110 (642)
|-|.+||.|. -++.|++ |++.-..+.+||+-|--||--.|-.
T Consensus 1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~tdqg 45 (169)
T PF04833_consen 1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTTDQG 45 (169)
T ss_pred CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceeccCC
Confidence 4588999985 4778888 9999999999999999999888755
No 7
>PF10563 CdCA1: Cadmium carbonic anhydrase repeat; InterPro: IPR018883 This entry represents the cadmium-binding carbonic anhydrase domain of marine diatoms []. The prevalence of carbonic anhydrase in diatoms that contain Cd at their active site probably reflects the very low concentration of Zn in the marine environment and the difficulty in acquiring inorganic carbon for photosynthesis. Compared with alpha- and gamma-carbonic anhydrases that use three histidines to coordinate the zinc-atom, this beta-carbonic anhydrase has two cysteines and one histidine, and rapidly binds cadmium []. ; PDB: 3BOH_A 3BOJ_A 3BOC_A 3BOE_A 3BOB_A.
Probab=38.83 E-value=6.1 Score=40.76 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=9.0
Q ss_pred CCCceeEEEEEeecCCCc
Q 038710 479 DNCGVRINWHLLSDYRGG 496 (642)
Q Consensus 479 dmCpVrIhWHVk~nYk~~ 496 (642)
.||||+||||+-.-....
T Consensus 5 ~mc~vnvhwHlgaEh~s~ 22 (218)
T PF10563_consen 5 SMCPVNVHWHLGAEHYSE 22 (218)
T ss_dssp EEEECGGG------CCCC
T ss_pred eeeeeeeecccccchhhh
Confidence 599999999998744433
No 8
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=37.54 E-value=16 Score=22.89 Aligned_cols=8 Identities=50% Similarity=1.481 Sum_probs=6.2
Q ss_pred CCCCCCCC
Q 038710 421 STCACGCN 428 (642)
Q Consensus 421 ptCACGC~ 428 (642)
.||+|+|+
T Consensus 7 ~tC~C~Cp 14 (14)
T PF03128_consen 7 DTCQCECP 14 (14)
T ss_pred CCcCccCC
Confidence 47999994
No 9
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.68 E-value=49 Score=32.05 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=34.7
Q ss_pred CCCCCceeEEEEEeecCCCCceecCCCcCcceeEEeCCccc
Q 038710 569 PRVPGYQQSVILFTKKTTPNINVARGDGFPTKVIFNGDECA 609 (642)
Q Consensus 569 ~~v~G~vQSeilf~K~~t~~ft~~~GwaFP~rVyFNGeEC~ 609 (642)
-+|.|++=-++.++|.. .+|++.+-+||=-+|-|.|+|=+
T Consensus 43 i~v~Gk~~r~i~l~Kg~-~t~~v~~~~g~~n~vev~g~~IR 82 (132)
T COG5341 43 ISVDGKVIRTIPLTKGN-ETFDVKENGGFYNKVEVKGNRIR 82 (132)
T ss_pred EEECCEEEEEEEcccCC-ccEEEEcCCCceEEEEEcCCEEE
Confidence 45678998999999876 89999999999999999998643
No 10
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.40 E-value=30 Score=29.71 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=17.5
Q ss_pred ChhhhhhHHhhccccceeEEEE
Q 038710 127 PETDLKSAVETARDWTQMEVQI 148 (642)
Q Consensus 127 p~~dLktai~TAgd~~qi~~~i 148 (642)
.+.||+.+||+|--|.++-.++
T Consensus 5 sPv~LR~~lE~A~~La~~GIRF 26 (61)
T PF07131_consen 5 SPVDLRKALEMAHSLAHIGIRF 26 (61)
T ss_pred cHHHHHHHHHHHHHHHHcCcee
Confidence 3567999999999999874444
No 11
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=23.51 E-value=67 Score=25.62 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=16.6
Q ss_pred eeeeece---EEEeeCceeeecCC
Q 038710 90 VGFQHNE---LLVFATNVVLADVT 110 (642)
Q Consensus 90 v~F~h~E---iLVsa~gavl~dg~ 110 (642)
+-|.|.| +|+.-+|+||.||+
T Consensus 13 ~q~~~~~a~ivl~GpSG~v~sdG~ 36 (40)
T PF08140_consen 13 VQFPHGVANIVLIGPSGAVLSDGK 36 (40)
T ss_pred EECCcccceEEEECCceEEeeCCc
Confidence 3466666 77888999999997
No 12
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=22.53 E-value=37 Score=30.56 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=35.9
Q ss_pred CCCcceeee---eeEEeecCCCcccccCccc-ccCCC--CCCCEEEEEEEEEeeCCCeEEEEEEecccccC
Q 038710 163 PLPANCNYV---MHICCIKDSSFRSKITAEN-EFLPR--QDGDITIMYDVMRSSETDYWAQVSISNHNTLR 227 (642)
Q Consensus 163 PmP~~i~l~---m~vCC~~~~~~~~~~~~~~-~ydPl--~~GniTI~wDV~q~~~~~Y~A~VTi~N~q~yr 227 (642)
-.|.+|++| +.|=|..+- ..+.++.+. -|--- +.|+.+|..+=.-..++.|...||=+|+.+|-
T Consensus 7 t~Pa~i~~~~tS~~Vs~~~~g-s~ValS~dg~l~G~ai~~sG~ati~l~~~it~~~~~tlTit~~n~~t~i 76 (81)
T PF03785_consen 7 THPASINLGQTSISVSCDVPG-SYVALSQDGDLYGKAIVNSGNATINLTNPITDEGTLTLTITAFNYVTYI 76 (81)
T ss_dssp E--SEEETT-SEEEEEESSTT--EEEEEETTEEEEEEE-BTTEEEEE-SS--TT-SEEEEEEE-TTB--EE
T ss_pred cccccccccccEEEEEecCCC-cEEEEecCCEEEEEEEecCceEEEECCcccCCCceEEEEEEEEccEEEE
Confidence 368899996 889996333 333333222 12111 39999999993334488899999999998873
No 13
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=20.23 E-value=1.4e+02 Score=29.55 Aligned_cols=86 Identities=20% Similarity=0.346 Sum_probs=38.3
Q ss_pred CceeeEeeeEeeccCcccccc--eEEEeeeeeceEEEeeCceeeecCCCCcCeeecCCcEEccCChhhhhhHHhhccccc
Q 038710 65 QAYRFESTVTILNNGLNELKS--WRVFVGFQHNELLVFATNVVLADVTSSLPAFVGNGTVFAGLPETDLKSAVETARDWT 142 (642)
Q Consensus 65 Qpy~F~a~~tv~N~g~~~lk~--W~~~v~F~h~EiLVsa~gavl~dg~~~~P~~v~ngt~~~g~p~~dLktai~TAgd~~ 142 (642)
-...|++.+|+.|.|...+.. |+++..+. |.|+-. . +. .|=..-=||--+.=.|-.+.+- | -||+
T Consensus 28 ~~~c~~~~ltl~n~~~~~~~~~dW~IYf~~i-r~i~~~-----~--s~-~f~i~hinGDl~kl~Pt~~F~g-l-~~Ge-- 94 (164)
T PF03173_consen 28 WASCFRAELTLTNPGDAPLPKSDWAIYFSSI-RPILQV-----D--SD-QFKITHINGDLHKLTPTAGFKG-L-APGE-- 94 (164)
T ss_dssp GG-EEEEEEEEEE-SS-B------EEEEE-S-S-EEEE-----S--ST-TEEEEE-STTEEEEEE-TT----B--TTE--
T ss_pred cccceEEEEEEEcCCCccCCCCCeEEEEecc-eeeecc-----C--CC-CeEEEEEcCeEEEEeECCCCCc-c-CCCC--
Confidence 378899999999999988765 99999987 567621 1 11 2212223554443333332210 0 1233
Q ss_pred eeEEEEEEeeeeeccCCCCCCCCc
Q 038710 143 QMEVQIRLVGTQFGVGAPNVPLPA 166 (642)
Q Consensus 143 qi~~~i~l~GT~Fgv~~p~~PmP~ 166 (642)
+.+|.++|..+-+..-.+ ||.
T Consensus 95 --s~~I~~~~~~w~~~~tD~-mp~ 115 (164)
T PF03173_consen 95 --SLEIPFVGEYWQVSETDA-MPG 115 (164)
T ss_dssp --EEEEEEEEES---SGGGS----
T ss_pred --EEEEEEEccccEEEEccC-CCc
Confidence 456777777766664333 554
Done!