Query 038710
Match_columns 642
No_of_seqs 125 out of 152
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 03:32:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ndz_E Endoglucanase D; cellot 95.3 0.043 1.5E-06 48.6 7.5 54 200-254 3-56 (107)
2 1exg_A EXO-1,4-beta-D-glycanas 93.0 0.2 6.7E-06 44.2 6.7 56 197-254 5-60 (110)
3 3icg_A Endoglucanase D; cellul 93.0 0.19 6.3E-06 53.6 7.8 58 196-254 379-436 (515)
4 1e5b_A Xylanase D; hydrolase, 92.2 0.05 1.7E-06 46.6 1.7 48 201-254 4-51 (87)
5 2cwr_A Chitinase; chitin-bindi 90.9 0.57 2E-05 41.2 7.1 48 202-254 12-59 (103)
6 1heh_C Endo-1,4-beta-xylanase 84.6 0.28 9.7E-06 42.0 1.1 50 198-253 2-51 (88)
7 1exg_A EXO-1,4-beta-D-glycanas 84.4 1 3.4E-05 39.6 4.6 39 68-106 20-58 (110)
8 3ndz_E Endoglucanase D; cellot 84.3 1.1 3.8E-05 39.6 4.8 40 68-107 16-55 (107)
9 3icg_A Endoglucanase D; cellul 71.0 5.4 0.00018 42.5 6.1 40 68-107 396-435 (515)
10 2cwr_A Chitinase; chitin-bindi 30.8 57 0.0019 28.5 4.7 40 68-110 22-62 (103)
11 2lqo_A Putative glutaredoxin R 28.8 37 0.0013 28.5 3.0 36 107-142 50-86 (92)
No 1
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=95.32 E-value=0.043 Score=48.57 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=46.5
Q ss_pred EEEEEEEEEeeCCCeEEEEEEecccccCCCCCceeeeeEcCCeeEEEecCceeee
Q 038710 200 ITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYV 254 (642)
Q Consensus 200 iTI~wDV~q~~~~~Y~A~VTi~N~q~yr~IdgW~L~W~W~~~E~IwsM~GA~~t~ 254 (642)
.++.|.|.+--.+||.|.|||.|.-- ..|++|+|+|++..++-|-++..|..+.
T Consensus 3 c~v~y~v~~~W~~Gf~~~vtVtN~g~-~~i~gWtv~~~~p~g~~it~~Wna~~s~ 56 (107)
T 3ndz_E 3 VEVTYAITNSWGSGASVNVTIKNNGT-TPINGWTLKWTMPINQTITNMWSASFVA 56 (107)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEECSS-SCEESCEEEEECCTTEEEEEEESEEEEE
T ss_pred cEEEEEEcccCCCCEEEEEEEEeCCC-CcccCcEEEEEcCCCCEEecccceEEEe
Confidence 47899998888899999999999743 3478999999999999999999997653
No 2
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A
Probab=93.03 E-value=0.2 Score=44.17 Aligned_cols=56 Identities=13% Similarity=0.244 Sum_probs=47.0
Q ss_pred CCCEEEEEEEEEeeCCCeEEEEEEecccccCCCCCceeeeeEcCCeeEEEecCceeee
Q 038710 197 DGDITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYV 254 (642)
Q Consensus 197 ~GniTI~wDV~q~~~~~Y~A~VTi~N~q~yr~IdgW~L~W~W~~~E~IwsM~GA~~t~ 254 (642)
.|..+++|. .+.-.+||.|.|+|.|.-- ..|++|+|.|++..++-|-++..|..+.
T Consensus 5 ~~~c~v~y~-~~~W~~Gf~~~vtVtN~g~-~~i~gWtv~~~~~~g~~i~~~Wna~~s~ 60 (110)
T 1exg_A 5 PAGCQVLWG-VNQWNTGFTANVTVKNTSS-APVDGWTLTFSFPSGQQVTQAWSSTVTQ 60 (110)
T ss_dssp CCCEEEECC-EEESSSEEEEEEEEEECSS-SCEESEEEEEECSSSCEEEEEESSEEEE
T ss_pred CCcEEEEEE-eCCCCCCEEEEEEEEeCCC-CcccceEEEEEcCCCcEEecccceEEEc
Confidence 467899998 7777899999999999643 3478999999999998898988887654
No 3
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=93.01 E-value=0.19 Score=53.59 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=50.2
Q ss_pred CCCCEEEEEEEEEeeCCCeEEEEEEecccccCCCCCceeeeeEcCCeeEEEecCceeee
Q 038710 196 QDGDITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYV 254 (642)
Q Consensus 196 ~~GniTI~wDV~q~~~~~Y~A~VTi~N~q~yr~IdgW~L~W~W~~~E~IwsM~GA~~t~ 254 (642)
+.|-.+++|.|.+.-.+||.|.|||.|.-- .-|+||+|+|++..++-|-++..|..+.
T Consensus 379 ~~~~~~~~~~~~~~W~~g~~~~v~v~n~~~-~~~~~W~~~~~~~~~~~i~~~wn~~~~~ 436 (515)
T 3icg_A 379 PQSAVEVTYAITNSWGSGASVNVTIKNNGT-TPINGWTLKWTMPINQTITNMWSASFVA 436 (515)
T ss_dssp --CCEEEEEEEEEECSSEEEEEEEEEECSS-SCEESCEEEEECCTTEEEEEEESEEEEE
T ss_pred CCCceEEEEEEecCCCCccEEEEEEEeCCC-CCcCCeEEEEEeCCCCEeeccccceEEe
Confidence 467899999999999999999999999754 3578999999999999999999998764
No 4
>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A 2xbd_A
Probab=92.16 E-value=0.05 Score=46.57 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=40.4
Q ss_pred EEEEEEEEeeCCCeEEEEEEecccccCCCCCceeeeeEcCCeeEEEecCceeee
Q 038710 201 TIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYV 254 (642)
Q Consensus 201 TI~wDV~q~~~~~Y~A~VTi~N~q~yr~IdgW~L~W~W~~~E~IwsM~GA~~t~ 254 (642)
+..|.|.+.-.+||.|.|+|.| +++|+|.|++..++=|-++..|..+.
T Consensus 4 ta~y~v~~~W~~Gf~~~vtVtn------~~gWtv~~~~~~g~~i~~~Wn~~~s~ 51 (87)
T 1e5b_A 4 SVTATRAEEWSDGFNVTYSVSG------SSAWTVNLALNGSQTIQASWNANVTG 51 (87)
T ss_dssp CCBCCBCCCCSSEEEEEEBCCS------CSSCCCEEECCTTCCEEEEESBCCEE
T ss_pred EEEEEECccCCCCEEEEEEEEc------cCceEEEEEcCCCCEEeeeeceeEec
Confidence 4567777667799999999998 69999999999998888888777653
No 5
>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A
Probab=90.90 E-value=0.57 Score=41.20 Aligned_cols=48 Identities=6% Similarity=0.010 Sum_probs=40.1
Q ss_pred EEEEEEEeeCCCeEEEEEEecccccCCCCCceeeeeEcCCeeEEEecCceeee
Q 038710 202 IMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPYV 254 (642)
Q Consensus 202 I~wDV~q~~~~~Y~A~VTi~N~q~yr~IdgW~L~W~W~~~E~IwsM~GA~~t~ 254 (642)
.+|. .+-=.+||.|.|||.|.- +++|+|.|++..++=|-++..|..+.
T Consensus 12 c~y~-~n~W~~Gf~~~vtVtN~g----~~gWtv~~~~~~g~~it~~Wna~~s~ 59 (103)
T 2cwr_A 12 LEVK-VNDWGSGAEYDVTLNLDG----QYDWTVKVKLAPGATVGSFWSANKQE 59 (103)
T ss_dssp EEEE-EEECSSEEEEEEEEEESS----CCCCEEEEEECTTCEEEEEESEEEEE
T ss_pred EEEE-ECCCCCceEEEEEEeCCC----CCcEEEEEECCCCcEEecccceEEec
Confidence 3677 455578999999999983 48999999999999999999888764
No 6
>1heh_C Endo-1,4-beta-xylanase D; hydrolase(xylan degradation), hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1hej_C
Probab=84.58 E-value=0.28 Score=42.02 Aligned_cols=50 Identities=10% Similarity=0.009 Sum_probs=40.4
Q ss_pred CCEEEEEEEEEeeCCCeEEEEEEecccccCCCCCceeeeeEcCCeeEEEecCceee
Q 038710 198 GDITIMYDVMRSSETDYWAQVSISNHNTLRRLDNWKLSGEWMRDEFIYGMKGAYPY 253 (642)
Q Consensus 198 GniTI~wDV~q~~~~~Y~A~VTi~N~q~yr~IdgW~L~W~W~~~E~IwsM~GA~~t 253 (642)
|--+.+|.|.+.-.+||.|.|||. + .++|+|.|++..++=|-++..|..+
T Consensus 2 g~Ctaty~~~n~W~~Gf~a~vtVt-----g-~~gWtv~~~~~~gq~vt~~Wna~~s 51 (88)
T 1heh_C 2 GSCSVSAVRGEEWADRFNVTYSVS-----G-SSSWVVTLGLNGGQSVQSSWNAALT 51 (88)
T ss_dssp CCCCCCCCCCSBCSSEEEEEEECS-----S-CCSCCCEEECCSSCCCCCEESSEEE
T ss_pred CceEEEEEEcccCCCceEEEEEEe-----c-cccEEEEEECCCCCEEEccccccCc
Confidence 344667777666779999999998 3 4899999999999888777777665
No 7
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A
Probab=84.44 E-value=1 Score=39.64 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=32.9
Q ss_pred eeEeeeEeeccCcccccceEEEeeeeeceEEEeeCceee
Q 038710 68 RFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVL 106 (642)
Q Consensus 68 ~F~a~~tv~N~g~~~lk~W~~~v~F~h~EiLVsa~gavl 106 (642)
.|.+.++|+|+|.+.|.+|++-+.|...+-+.++=++.+
T Consensus 20 Gf~~~vtVtN~g~~~i~gWtv~~~~~~g~~i~~~Wna~~ 58 (110)
T 1exg_A 20 GFTANVTVKNTSSAPVDGWTLTFSFPSGQQVTQAWSSTV 58 (110)
T ss_dssp EEEEEEEEEECSSSCEESEEEEEECSSSCEEEEEESSEE
T ss_pred CEEEEEEEEeCCCCcccceEEEEEcCCCcEEecccceEE
Confidence 499999999999999999999999998766666655544
No 8
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=84.29 E-value=1.1 Score=39.57 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=34.8
Q ss_pred eeEeeeEeeccCcccccceEEEeeeeeceEEEeeCceeee
Q 038710 68 RFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLA 107 (642)
Q Consensus 68 ~F~a~~tv~N~g~~~lk~W~~~v~F~h~EiLVsa~gavl~ 107 (642)
.|.++++|+|+|.+.|.+|++-+.|.-.+-+.++=+|.+.
T Consensus 16 Gf~~~vtVtN~g~~~i~gWtv~~~~p~g~~it~~Wna~~s 55 (107)
T 3ndz_E 16 GASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFV 55 (107)
T ss_dssp EEEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEE
T ss_pred CEEEEEEEEeCCCCcccCcEEEEEcCCCCEEecccceEEE
Confidence 4999999999999999999999999877777777776654
No 9
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=71.02 E-value=5.4 Score=42.47 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=35.3
Q ss_pred eeEeeeEeeccCcccccceEEEeeeeeceEEEeeCceeee
Q 038710 68 RFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLA 107 (642)
Q Consensus 68 ~F~a~~tv~N~g~~~lk~W~~~v~F~h~EiLVsa~gavl~ 107 (642)
.|.+++||+|+|...|.+|++-+.|.-.+-+.++=+|.++
T Consensus 396 g~~~~v~v~n~~~~~~~~W~~~~~~~~~~~i~~~wn~~~~ 435 (515)
T 3icg_A 396 GASVNVTIKNNGTTPINGWTLKWTMPINQTITNMWSASFV 435 (515)
T ss_dssp EEEEEEEEEECSSSCEESCEEEEECCTTEEEEEEESEEEE
T ss_pred ccEEEEEEEeCCCCCcCCeEEEEEeCCCCEeeccccceEE
Confidence 4999999999999999999999999877777888777664
No 10
>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A
Probab=30.82 E-value=57 Score=28.51 Aligned_cols=40 Identities=18% Similarity=0.053 Sum_probs=29.5
Q ss_pred eeEeeeEeeccCcccccceEEEeeeeeceEEEeeCceeee-cCC
Q 038710 68 RFESTVTILNNGLNELKSWRVFVGFQHNELLVFATNVVLA-DVT 110 (642)
Q Consensus 68 ~F~a~~tv~N~g~~~lk~W~~~v~F~h~EiLVsa~gavl~-dg~ 110 (642)
.|.+.++|.|.|. .+|++-+.|.-.+-+-++=+|-+. +|.
T Consensus 22 Gf~~~vtVtN~g~---~gWtv~~~~~~g~~it~~Wna~~s~sg~ 62 (103)
T 2cwr_A 22 GAEYDVTLNLDGQ---YDWTVKVKLAPGATVGSFWSANKQEGNG 62 (103)
T ss_dssp EEEEEEEEEESSC---CCCEEEEEECTTCEEEEEESEEEEEETT
T ss_pred ceEEEEEEeCCCC---CcEEEEEECCCCcEEecccceEEecCCC
Confidence 4899999999986 799999999866655555444443 443
No 11
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=28.83 E-value=37 Score=28.54 Aligned_cols=36 Identities=8% Similarity=0.218 Sum_probs=29.5
Q ss_pred ecCCCCcCe-eecCCcEEccCChhhhhhHHhhccccc
Q 038710 107 ADVTSSLPA-FVGNGTVFAGLPETDLKSAVETARDWT 142 (642)
Q Consensus 107 ~dg~~~~P~-~v~ngt~~~g~p~~dLktai~TAgd~~ 142 (642)
..|...+|. .+++|+++.|+...+|+.+++.+|-|.
T Consensus 50 ~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L~el~gL~ 86 (92)
T 2lqo_A 50 NGGNRTVPTVKFADGSTLTNPSADEVKAKLVKIAGLE 86 (92)
T ss_dssp SSSSSCSCEEEETTSCEEESCCHHHHHHHHHHHHCCS
T ss_pred cCCCCEeCEEEEeCCEEEeCCCHHHHHHHHHHhcCCc
Confidence 346558997 578999999999999999999877653
Done!