BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038714
         (319 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8TEP8|CE192_HUMAN Centrosomal protein of 192 kDa OS=Homo sapiens GN=CEP192 PE=1 SV=2
          Length = 1941

 Score = 33.5 bits (75), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 191  AVVQRQHDVLRNEVD-EMWRRMQISSSNSDEKGNHDYQVTVPPDERTIFLTFSKGYP-IS 248
            A  ++QH  L+N  + E++  +++    S    +    +  P +E  + ++F+   P   
Sbjct: 1067 ASSRKQHLPLKNAGNIEVYLDIKVPEQGSHFSVDPKNLLLKPGEEHEVIVSFTPKDPEAC 1126

Query: 249  ENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFM 292
            E  I   F++ FG  +E +   EV SS  +PL     +D  S +
Sbjct: 1127 EERILKIFVQPFGPQYEVVLKGEVISSGSKPLSPGPCLDIPSIL 1170


>sp|B9DRZ0|KHSE_STRU0 Homoserine kinase OS=Streptococcus uberis (strain ATCC BAA-854 /
           0140J) GN=thrB PE=3 SV=1
          Length = 287

 Score = 33.5 bits (75), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 129 AVTKNVIEVCARAFEDLVLHEVQNKAIIRDQNAENSLRGNENMVKQQLSDYGPIVPVMSY 188
           A+ K  +E   RA E+ + HE+  + ++++ ++   +          LS  GP V ++  
Sbjct: 194 ALLKGDMEKAGRAIENDLFHELYRQRLVKEFHSIKQISKKSGAYATYLSGAGPTVMILCP 253

Query: 189 YDAVVQRQHDVLRNEVDEMWRRMQISSSNSDEKG 222
           ++ V     ++    +D +  R+QI     DEKG
Sbjct: 254 HEKVEGIFQELTDLSLDGLLERLQI-----DEKG 282


>sp|P81432|SYD_BUCAP Aspartate--tRNA ligase OS=Buchnera aphidicola subsp. Schizaphis
           graminum (strain Sg) GN=aspS PE=3 SV=1
          Length = 584

 Score = 31.6 bits (70), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 8/82 (9%)

Query: 184 PVMSYYDAVVQRQHDV--LRNEVDEMWRRMQISSSNSDEKGNHDYQVTVPPDERTIFLTF 241
           P +S+YD++ +   D   LRN ++ +     IS    +EK    +Q+ +    R   L F
Sbjct: 266 PKISFYDSMKRYGSDKPDLRNPMEIV----DISDIVIEEKVASFFQINLKKKNRIALLCF 321

Query: 242 SKGYPISENEIRDF--FIRKFG 261
            +G  IS+ +I ++  +++KFG
Sbjct: 322 GQGNKISQKKIDEYSNYVKKFG 343


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,648,864
Number of Sequences: 539616
Number of extensions: 4266601
Number of successful extensions: 10762
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10761
Number of HSP's gapped (non-prelim): 9
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)