Query 038714
Match_columns 319
No_of_seqs 73 out of 75
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 03:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rs2_A Musashi-1, RNA-binding 98.7 9E-08 3.1E-12 76.3 9.5 82 230-319 21-104 (109)
2 1x4h_A RNA-binding protein 28; 98.5 2.3E-07 7.7E-12 72.8 7.5 85 230-319 11-101 (111)
3 1whw_A Hypothetical protein ri 98.5 4.4E-07 1.5E-11 69.9 8.9 82 231-319 5-88 (99)
4 2cqd_A RNA-binding region cont 98.5 9.7E-07 3.3E-11 70.1 10.9 81 230-318 13-95 (116)
5 2dis_A Unnamed protein product 98.5 5.6E-07 1.9E-11 70.5 9.0 85 230-318 4-91 (109)
6 2lxi_A RNA-binding protein 10; 98.5 3.6E-07 1.2E-11 70.6 7.5 80 235-319 2-83 (91)
7 2dh8_A DAZ-associated protein 98.5 2.2E-07 7.6E-12 72.5 6.2 82 230-319 12-95 (105)
8 2xs2_A Deleted in azoospermia- 98.4 3.4E-07 1.2E-11 71.1 6.8 78 231-318 6-85 (102)
9 1s79_A Lupus LA protein; RRM, 98.4 4E-07 1.4E-11 72.5 7.3 75 231-314 8-84 (103)
10 3s7r_A Heterogeneous nuclear r 98.4 9.8E-07 3.4E-11 66.4 9.1 78 230-315 7-86 (87)
11 2cqg_A TDP-43, TAR DNA-binding 98.4 8.7E-07 3E-11 68.8 9.0 81 230-319 11-93 (103)
12 3bs9_A Nucleolysin TIA-1 isofo 98.4 5.4E-07 1.8E-11 67.5 7.1 82 231-319 3-86 (87)
13 1x5s_A Cold-inducible RNA-bind 98.4 1.2E-06 4.1E-11 67.8 9.2 79 230-318 8-91 (102)
14 2dgs_A DAZ-associated protein 98.4 8.4E-07 2.9E-11 68.5 8.1 82 230-319 6-89 (99)
15 1x5u_A Splicing factor 3B subu 98.4 9E-07 3.1E-11 68.9 8.0 83 230-319 11-95 (105)
16 2do4_A Squamous cell carcinoma 98.4 1.1E-06 3.7E-11 67.9 8.4 82 230-319 13-96 (100)
17 3ucg_A Polyadenylate-binding p 98.4 1.1E-06 3.9E-11 66.0 8.3 78 233-318 5-84 (89)
18 2dgo_A Cytotoxic granule-assoc 98.4 1E-06 3.6E-11 69.7 8.4 83 230-319 11-95 (115)
19 1x4b_A Heterogeneous nuclear r 98.4 1.6E-06 5.3E-11 69.0 9.0 81 231-319 24-106 (116)
20 2dnz_A Probable RNA-binding pr 98.4 7.7E-07 2.6E-11 67.9 6.8 79 231-319 2-85 (95)
21 1wi8_A EIF-4B, eukaryotic tran 98.4 1.3E-06 4.6E-11 68.0 8.2 81 230-319 11-94 (104)
22 2cq0_A Eukaryotic translation 98.4 7.4E-07 2.5E-11 69.3 6.7 82 231-319 12-95 (103)
23 3mdf_A Peptidyl-prolyl CIS-tra 98.3 2.1E-06 7E-11 64.0 8.7 75 230-314 3-82 (85)
24 2dng_A Eukaryotic translation 98.3 1.6E-06 5.4E-11 67.5 8.4 81 229-318 10-92 (103)
25 1x5t_A Splicing factor 3B subu 98.3 1.9E-06 6.4E-11 65.8 8.7 81 232-319 3-86 (96)
26 2cpy_A RNA-binding protein 12; 98.3 9.2E-07 3.1E-11 70.6 7.0 82 229-318 10-93 (114)
27 2cph_A RNA binding motif prote 98.3 2.7E-06 9.4E-11 66.1 9.4 82 230-318 11-96 (107)
28 2j76_E EIF-4B, EIF4B, eukaryot 98.3 6.4E-07 2.2E-11 69.9 5.4 80 230-318 15-97 (100)
29 2dnm_A SRP46 splicing factor; 98.3 1E-06 3.6E-11 68.4 6.6 77 231-317 10-91 (103)
30 2cjk_A Nuclear polyadenylated 98.3 1.1E-06 3.6E-11 72.4 6.9 77 233-318 2-80 (167)
31 2dnl_A Cytoplasmic polyadenyla 98.3 9.2E-07 3.1E-11 70.6 6.2 82 231-318 5-100 (114)
32 1wf0_A TDP-43, TAR DNA-binding 98.3 2E-06 6.7E-11 65.1 7.8 74 232-319 3-78 (88)
33 4a8x_A RNA-binding protein wit 98.3 2.3E-06 7.9E-11 64.0 8.0 76 233-318 3-84 (88)
34 1uaw_A Mouse-musashi-1; RNP-ty 98.3 8.8E-07 3E-11 64.9 5.5 73 235-315 1-75 (77)
35 2x1f_A MRNA 3'-END-processing 98.3 4E-06 1.4E-10 64.4 9.4 75 234-318 2-81 (96)
36 1oo0_B CG8781-PA, drosophila Y 98.3 1.7E-06 5.8E-11 68.0 7.3 82 230-318 22-105 (110)
37 1l3k_A Heterogeneous nuclear r 98.3 1.7E-06 5.8E-11 72.9 7.8 81 230-318 9-91 (196)
38 2cq3_A RNA-binding protein 9; 98.3 2.7E-06 9.3E-11 66.0 8.3 81 230-319 11-93 (103)
39 2khc_A Testis-specific RNP-typ 98.3 1.5E-06 5.3E-11 69.0 7.0 78 230-314 36-115 (118)
40 2cpz_A CUG triplet repeat RNA- 98.3 3.2E-06 1.1E-10 67.0 8.7 83 230-319 21-105 (115)
41 2e5h_A Zinc finger CCHC-type a 98.3 3.3E-06 1.1E-10 64.2 8.4 78 230-314 12-91 (94)
42 2cqb_A Peptidyl-prolyl CIS-tra 98.3 1.6E-06 5.5E-11 67.1 6.7 83 230-319 8-92 (102)
43 1iqt_A AUF1, heterogeneous nuc 98.3 2.2E-06 7.5E-11 62.6 7.1 72 236-315 1-74 (75)
44 3s8s_A Histone-lysine N-methyl 98.3 4.1E-06 1.4E-10 67.3 9.2 75 232-316 4-83 (110)
45 2fy1_A RNA-binding motif prote 98.3 2.6E-06 8.9E-11 68.6 8.0 80 231-318 4-85 (116)
46 4fxv_A ELAV-like protein 1; RN 98.3 4.6E-06 1.6E-10 65.5 9.2 79 231-319 16-99 (99)
47 3d2w_A TAR DNA-binding protein 98.3 3.9E-06 1.3E-10 64.6 8.6 76 230-319 7-84 (89)
48 2jrs_A RNA-binding protein 39; 98.2 3.5E-06 1.2E-10 67.0 8.2 80 230-319 22-106 (108)
49 2ywk_A Putative RNA-binding pr 98.2 2.5E-06 8.4E-11 65.0 7.1 77 230-314 12-90 (95)
50 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.2 5.4E-06 1.8E-10 67.2 9.5 78 230-314 59-138 (140)
51 1x4a_A Splicing factor, argini 98.2 3.3E-06 1.1E-10 66.3 7.9 79 230-318 18-98 (109)
52 2cpf_A RNA binding motif prote 98.2 3.8E-06 1.3E-10 64.5 8.1 81 231-318 2-87 (98)
53 2cqi_A Nucleolysin TIAR; RNA r 98.2 5.7E-06 2E-10 64.2 8.9 80 230-318 11-92 (103)
54 2dhg_A TRNA selenocysteine ass 98.2 2.8E-06 9.6E-11 65.9 7.1 79 231-318 6-89 (104)
55 2cqc_A Arginine/serine-rich sp 98.2 3.2E-06 1.1E-10 64.3 7.2 79 230-315 11-91 (95)
56 2e5g_A U6 snRNA-specific termi 98.2 4.3E-06 1.5E-10 64.1 7.8 75 231-318 5-81 (94)
57 3md1_A Nuclear and cytoplasmic 98.2 3.4E-06 1.2E-10 62.6 6.9 74 236-319 3-81 (83)
58 1wel_A RNA-binding protein 12; 98.2 6.7E-07 2.3E-11 72.3 3.3 80 230-317 21-102 (124)
59 1wg5_A Heterogeneous nuclear r 98.2 3.2E-06 1.1E-10 66.4 7.1 79 230-316 11-91 (104)
60 2cq4_A RNA binding motif prote 98.2 1.6E-06 5.6E-11 68.6 5.4 79 232-318 23-103 (114)
61 2lkz_A RNA-binding protein 5; 98.2 3E-06 1E-10 66.8 6.8 79 231-314 6-90 (95)
62 1u6f_A Tcubp1, RNA-binding pro 98.2 4.4E-06 1.5E-10 68.2 8.1 82 230-318 38-121 (139)
63 1p27_B RNA-binding protein 8A; 98.2 2.2E-06 7.6E-11 66.7 5.9 78 231-318 20-102 (106)
64 2dgv_A HnRNP M, heterogeneous 98.2 3.7E-06 1.3E-10 63.7 6.8 77 230-318 4-85 (92)
65 2mss_A Protein (musashi1); RNA 98.2 4.1E-06 1.4E-10 61.2 6.9 68 243-315 5-74 (75)
66 2dnh_A Bruno-like 5, RNA bindi 98.2 8.6E-06 2.9E-10 63.2 9.0 77 231-318 12-96 (105)
67 2d9p_A Polyadenylate-binding p 98.2 2.5E-06 8.6E-11 66.2 5.9 77 230-318 11-92 (103)
68 2kn4_A Immunoglobulin G-bindin 98.2 8.9E-06 3.1E-10 67.6 9.5 82 230-318 66-149 (158)
69 2div_A TRNA selenocysteine ass 98.1 7.9E-06 2.7E-10 62.8 8.3 75 230-310 5-81 (99)
70 2kxn_B Transformer-2 protein h 98.1 1.8E-06 6.1E-11 71.1 5.0 83 230-319 42-126 (129)
71 2do0_A HnRNP M, heterogeneous 98.1 9.9E-06 3.4E-10 63.8 9.1 76 230-316 11-91 (114)
72 3n9u_C Cleavage and polyadenyl 98.1 3.1E-06 1.1E-10 72.2 6.6 81 231-318 52-136 (156)
73 2cjk_A Nuclear polyadenylated 98.1 4.2E-06 1.4E-10 68.7 7.1 79 233-319 86-166 (167)
74 3lqv_A PRE-mRNA branch site pr 98.1 8E-06 2.7E-10 64.5 8.4 76 230-318 4-84 (115)
75 1p1t_A Cleavage stimulation fa 98.1 3.5E-06 1.2E-10 65.2 6.1 81 231-318 5-87 (104)
76 2dgw_A Probable RNA-binding pr 98.1 9.3E-06 3.2E-10 61.6 8.3 79 230-318 6-86 (91)
77 2cqp_A RNA-binding protein 12; 98.1 4.3E-06 1.5E-10 64.2 6.4 80 230-316 11-92 (98)
78 2kt5_A RNA and export factor-b 98.1 7.3E-06 2.5E-10 65.9 8.0 80 230-317 31-112 (124)
79 2err_A Ataxin-2-binding protei 98.1 4.9E-06 1.7E-10 66.0 6.7 81 230-319 25-107 (109)
80 2cpe_A RNA-binding protein EWS 98.1 1E-05 3.4E-10 63.8 8.5 82 231-318 12-102 (113)
81 2ki2_A SS-DNA binding protein 98.1 2.2E-06 7.4E-11 64.9 4.4 75 235-317 2-78 (90)
82 2jwn_A Embryonic polyadenylate 98.1 1.2E-05 4E-10 64.4 8.9 76 232-315 34-111 (124)
83 4f25_A Polyadenylate-binding p 98.1 1.1E-05 3.8E-10 64.5 8.4 75 233-319 4-83 (115)
84 2db1_A Heterogeneous nuclear r 98.1 5E-06 1.7E-10 67.1 6.4 78 230-315 13-94 (118)
85 2dgp_A Bruno-like 4, RNA bindi 98.1 1E-05 3.5E-10 62.9 7.9 82 230-318 9-95 (106)
86 1h2v_Z 20 kDa nuclear CAP bind 98.1 1.2E-05 4.1E-10 67.1 8.7 79 230-315 35-115 (156)
87 2cqh_A IGF-II mRNA-binding pro 98.1 3.8E-06 1.3E-10 64.0 5.0 75 230-319 4-83 (93)
88 1x4e_A RNA binding motif, sing 98.1 8.1E-06 2.8E-10 61.0 6.8 62 231-297 2-65 (85)
89 3ulh_A THO complex subunit 4; 98.1 1.9E-05 6.6E-10 61.4 9.2 77 230-314 25-103 (107)
90 1fj7_A Nucleolin RBD1, protein 98.1 1.4E-06 4.7E-11 67.5 2.5 80 231-319 14-95 (101)
91 1x5p_A Negative elongation fac 98.1 1.5E-05 5E-10 61.5 8.4 76 230-318 11-86 (97)
92 3md3_A Nuclear and cytoplasmic 98.1 1.4E-05 4.9E-10 65.0 8.6 71 235-316 1-76 (166)
93 2dha_A FLJ20171 protein; RRM d 98.1 5.7E-06 1.9E-10 68.4 6.1 77 231-315 20-101 (123)
94 3p5t_L Cleavage and polyadenyl 98.0 2.7E-06 9.2E-11 64.9 3.6 73 236-318 3-82 (90)
95 3ex7_B RNA-binding protein 8A; 98.0 5.5E-06 1.9E-10 66.5 5.6 78 230-317 18-100 (126)
96 2fc9_A NCL protein; structure 98.0 9.3E-06 3.2E-10 62.7 6.7 78 230-318 11-90 (101)
97 1l3k_A Heterogeneous nuclear r 98.0 1.4E-05 4.8E-10 67.3 8.2 80 232-319 102-183 (196)
98 2lea_A Serine/arginine-rich sp 98.0 5.8E-06 2E-10 68.4 5.5 81 231-318 44-126 (135)
99 2lmi_A GRSF-1, G-rich sequence 98.0 3.6E-06 1.2E-10 66.4 4.1 80 230-317 7-90 (107)
100 2hgl_A HNRPF protein, heteroge 98.0 1E-05 3.5E-10 67.9 6.9 79 230-316 40-122 (136)
101 1wez_A HnRNP H', FTP-3, hetero 98.0 8.3E-06 2.8E-10 64.4 5.9 77 230-316 11-89 (102)
102 2m2b_A RNA-binding protein 10; 98.0 2.6E-06 9E-11 69.6 3.0 82 231-318 20-107 (131)
103 2la6_A RNA-binding protein FUS 98.0 1.3E-05 4.5E-10 61.8 6.8 78 229-315 8-97 (99)
104 2dnq_A RNA-binding protein 4B; 98.0 1.4E-05 4.9E-10 60.6 6.8 75 230-319 4-80 (90)
105 2dnp_A RNA-binding protein 14; 98.0 1.6E-05 5.6E-10 60.2 7.1 74 230-318 5-80 (90)
106 2ek1_A RNA-binding protein 12; 98.0 1E-05 3.6E-10 61.5 5.9 78 231-315 12-91 (95)
107 1wex_A Hypothetical protein (r 98.0 7.5E-06 2.6E-10 65.5 5.1 75 232-317 13-89 (104)
108 4f02_A Polyadenylate-binding p 98.0 2.7E-05 9.2E-10 68.0 9.1 75 231-315 12-91 (213)
109 3ns6_A Eukaryotic translation 98.0 9.8E-06 3.3E-10 63.3 5.5 75 234-318 6-92 (100)
110 2voo_A Lupus LA protein; RNA-b 98.0 2.1E-05 7.1E-10 69.0 8.2 73 233-314 108-182 (193)
111 3r27_A HnRNP L, heterogeneous 98.0 2.1E-05 7.1E-10 63.4 7.5 76 231-317 18-95 (100)
112 1nu4_A U1A RNA binding domain; 97.9 9.3E-06 3.2E-10 62.0 5.1 75 231-318 5-88 (97)
113 2dgt_A RNA-binding protein 30; 97.9 2.9E-05 9.8E-10 59.1 7.8 75 230-319 6-82 (92)
114 2krb_A Eukaryotic translation 97.9 2E-05 6.7E-10 58.8 6.7 67 234-309 1-75 (81)
115 1b7f_A Protein (SXL-lethal pro 97.9 1.6E-05 5.6E-10 65.1 6.7 75 234-318 3-82 (168)
116 2la4_A Nuclear and cytoplasmic 97.9 2.8E-05 9.7E-10 60.0 7.7 73 230-318 23-100 (101)
117 2hgm_A HNRPF protein, heteroge 97.9 1.2E-05 4.2E-10 66.9 5.8 78 230-316 38-118 (126)
118 2cpx_A Hypothetical protein FL 97.9 1.1E-05 3.6E-10 63.7 4.7 79 230-318 21-104 (115)
119 2cpj_A Non-POU domain-containi 97.9 1.4E-05 4.7E-10 61.7 5.3 73 230-318 11-88 (99)
120 1fjc_A Nucleolin RBD2, protein 97.9 1.4E-05 4.8E-10 61.1 5.2 78 230-319 12-91 (96)
121 1sjq_A Polypyrimidine tract-bi 97.9 1.9E-05 6.4E-10 64.2 6.1 73 230-316 12-89 (105)
122 1fxl_A Paraneoplastic encephal 97.9 5.6E-05 1.9E-09 61.5 9.1 74 234-317 2-80 (167)
123 2cq1_A PTB-like protein L; RRM 97.9 1.3E-05 4.6E-10 63.8 5.2 77 231-318 12-90 (101)
124 2e5j_A Methenyltetrahydrofolat 97.9 5.2E-05 1.8E-09 58.3 8.3 75 230-319 15-94 (97)
125 1x4g_A Nucleolysin TIAR; struc 97.9 7.2E-05 2.5E-09 58.7 9.3 72 231-318 22-98 (109)
126 2dgu_A Heterogeneous nuclear r 97.9 4.5E-05 1.5E-09 59.3 7.9 74 231-319 8-83 (103)
127 2yh0_A Splicing factor U2AF 65 97.9 3.3E-05 1.1E-09 65.1 7.6 83 230-319 110-194 (198)
128 2jvo_A Nucleolar protein 3; nu 97.8 3.7E-05 1.3E-09 61.1 7.3 71 230-318 27-102 (108)
129 2nlw_A Eukaryotic translation 97.8 5.6E-05 1.9E-09 59.3 8.1 74 233-315 14-96 (105)
130 2dgx_A KIAA0430 protein; RRM d 97.8 6.6E-05 2.3E-09 57.8 8.3 78 231-318 6-89 (96)
131 1x4c_A Splicing factor, argini 97.8 8.2E-05 2.8E-09 58.5 9.0 75 231-319 12-93 (108)
132 1why_A Hypothetical protein ri 97.8 2.7E-05 9.2E-10 59.8 6.0 73 231-319 14-93 (97)
133 2hzc_A Splicing factor U2AF 65 97.8 6.9E-05 2.4E-09 55.8 8.1 71 231-315 3-86 (87)
134 1rk8_A CG8781-PA, CG8781-PA pr 97.8 3.5E-05 1.2E-09 65.2 7.2 80 231-317 69-150 (165)
135 2dnn_A RNA-binding protein 12; 97.8 1.9E-05 6.4E-10 63.8 5.3 77 230-316 12-90 (109)
136 2fc8_A NCL protein; structure 97.8 2.3E-05 7.8E-10 60.5 5.6 80 230-319 11-92 (102)
137 2cpd_A Apobec-1 stimulating pr 97.8 0.0001 3.6E-09 56.7 9.3 74 230-318 11-88 (99)
138 2hgn_A Heterogeneous nuclear r 97.8 1.1E-05 3.8E-10 68.0 3.9 76 230-315 42-119 (139)
139 2ytc_A PRE-mRNA-splicing facto 97.8 8.9E-05 3E-09 55.1 8.5 71 230-313 8-81 (85)
140 1fje_B Nucleolin RBD12, protei 97.8 2.1E-05 7.1E-10 65.4 5.2 81 229-318 8-90 (175)
141 2bz2_A Negative elongation fac 97.8 3.2E-05 1.1E-09 63.0 5.8 73 230-318 35-110 (121)
142 2qfj_A FBP-interacting repress 97.8 4.1E-05 1.4E-09 65.4 6.7 79 231-316 25-105 (216)
143 2cpi_A CCR4-NOT transcription 97.8 3.1E-05 1.1E-09 61.4 5.5 80 233-319 14-101 (111)
144 1x5o_A RNA binding motif, sing 97.8 4.2E-05 1.4E-09 60.3 6.1 62 230-297 21-84 (114)
145 2lcw_A RNA-binding protein FUS 96.9 4.3E-06 1.5E-10 66.5 0.0 82 231-318 4-94 (116)
146 2f3j_A RNA and export factor b 97.7 6.8E-05 2.3E-09 65.0 7.2 78 230-315 84-163 (177)
147 2g4b_A Splicing factor U2AF 65 97.7 0.00014 4.9E-09 59.8 8.9 78 231-315 91-170 (172)
148 3q2s_C Cleavage and polyadenyl 97.7 5.7E-05 2E-09 68.0 6.9 77 233-316 67-147 (229)
149 2e44_A Insulin-like growth fac 97.7 5.1E-05 1.8E-09 57.8 5.6 74 231-319 12-92 (96)
150 2ad9_A Polypyrimidine tract-bi 97.7 3E-05 1E-09 64.1 4.5 77 231-318 28-106 (119)
151 1wf1_A RNA-binding protein RAL 97.7 0.00021 7.1E-09 56.1 9.2 69 231-317 24-98 (110)
152 2xnq_A Nuclear polyadenylated 97.7 0.0003 1E-08 54.6 9.6 75 229-318 17-94 (97)
153 3nmr_A Cugbp ELAV-like family 97.7 8.6E-05 3E-09 61.0 6.9 59 233-296 2-64 (175)
154 2i2y_A Fusion protein consists 97.7 9.2E-05 3.1E-09 61.3 7.0 75 230-319 69-148 (150)
155 3md3_A Nuclear and cytoplasmic 97.6 0.00015 5.1E-09 58.9 7.9 75 230-314 83-162 (166)
156 4f02_A Polyadenylate-binding p 97.6 0.00014 4.9E-09 63.4 7.9 75 233-319 102-181 (213)
157 2qfj_A FBP-interacting repress 97.6 0.00011 3.6E-09 62.8 6.8 77 232-318 123-204 (216)
158 1x4d_A Matrin 3; structural ge 97.6 6.6E-05 2.2E-09 60.2 4.9 73 231-314 12-87 (102)
159 2hvz_A Splicing factor, argini 97.6 9.2E-05 3.1E-09 57.1 5.2 71 236-318 2-74 (101)
160 3pgw_A U1-A; protein-RNA compl 97.6 0.00022 7.4E-09 64.1 8.4 75 231-315 6-86 (282)
161 3egn_A RNA-binding protein 40; 97.5 0.00013 4.3E-09 59.9 6.4 77 231-316 42-127 (143)
162 2a3j_A U1 small nuclear ribonu 97.5 0.00041 1.4E-08 57.3 9.4 70 232-314 27-105 (127)
163 2ghp_A U4/U6 snRNA-associated 97.5 0.0003 1E-08 63.4 9.2 82 230-319 206-291 (292)
164 1fje_B Nucleolin RBD12, protei 97.5 0.00019 6.6E-09 59.4 7.3 78 230-319 95-174 (175)
165 2g4b_A Splicing factor U2AF 65 97.5 0.00019 6.5E-09 59.0 7.1 72 232-316 2-85 (172)
166 2jvr_A Nucleolar protein 3; RN 97.5 0.00035 1.2E-08 56.6 8.4 77 230-316 24-102 (111)
167 3nmr_A Cugbp ELAV-like family 97.5 0.00022 7.6E-09 58.5 6.9 61 231-297 92-154 (175)
168 2yh0_A Splicing factor U2AF 65 97.5 0.00015 5.2E-09 61.0 5.9 71 233-316 3-85 (198)
169 3pgw_S U1-70K; protein-RNA com 97.5 0.00034 1.2E-08 68.9 9.3 79 231-316 99-179 (437)
170 1b7f_A Protein (SXL-lethal pro 97.4 0.00012 4.1E-09 59.9 4.8 73 231-313 86-165 (168)
171 2ghp_A U4/U6 snRNA-associated 97.4 0.00047 1.6E-08 62.1 8.9 76 230-315 37-114 (292)
172 3smz_A Protein raver-1, ribonu 97.4 0.00018 6.2E-09 64.6 6.2 77 232-319 182-264 (284)
173 2kvi_A Nuclear polyadenylated 97.4 0.00039 1.3E-08 53.3 6.5 68 231-316 7-80 (96)
174 3pgw_A U1-A; protein-RNA compl 97.3 0.0006 2E-08 61.1 8.7 70 231-312 204-276 (282)
175 1whx_A Hypothetical protein ri 97.3 0.00025 8.5E-09 56.4 5.5 64 232-311 8-76 (111)
176 3smz_A Protein raver-1, ribonu 97.3 0.00041 1.4E-08 62.3 7.6 79 230-318 91-174 (284)
177 1x4f_A Matrin 3; structural ge 97.3 9.8E-05 3.3E-09 60.4 2.6 74 231-315 22-98 (112)
178 2adc_A Polypyrimidine tract-bi 97.3 0.00048 1.6E-08 60.6 6.9 72 230-316 30-107 (229)
179 2dit_A HIV TAT specific factor 97.2 0.00071 2.4E-08 53.6 7.2 76 230-319 11-102 (112)
180 3sde_A Paraspeckle component 1 97.2 0.00037 1.3E-08 62.7 5.8 80 231-316 93-176 (261)
181 1fxl_A Paraneoplastic encephal 97.2 0.00087 3E-08 54.3 7.5 69 232-310 86-159 (167)
182 1wg1_A KIAA1579 protein, homol 97.1 0.00069 2.4E-08 51.1 5.0 70 232-315 3-74 (88)
183 3sde_A Paraspeckle component 1 97.0 0.0014 4.8E-08 58.9 7.7 71 230-316 18-93 (261)
184 3beg_B Splicing factor, argini 97.0 0.00078 2.7E-08 53.7 4.9 61 233-310 15-80 (115)
185 1qm9_A Polypyrimidine tract-bi 96.9 0.0008 2.7E-08 57.0 4.9 68 233-315 2-75 (198)
186 2d9o_A DNAJ (HSP40) homolog, s 96.9 0.0061 2.1E-07 48.4 9.6 58 234-298 10-73 (100)
187 2j8a_A Histone-lysine N-methyl 96.8 0.0017 6E-08 55.4 5.7 40 247-288 18-57 (136)
188 2cq2_A Hypothetical protein LO 96.8 0.0042 1.4E-07 50.9 7.7 59 233-300 24-87 (114)
189 3tyt_A Heterogeneous nuclear r 96.8 0.0044 1.5E-07 54.4 8.4 67 233-314 3-75 (205)
190 1jmt_A Splicing factor U2AF 35 96.7 0.004 1.4E-07 49.3 7.2 61 247-314 27-101 (104)
191 2pe8_A Splicing factor 45; RRM 96.7 0.0033 1.1E-07 50.1 6.6 63 248-317 26-92 (105)
192 1sjr_A Polypyrimidine tract-bi 96.5 0.0052 1.8E-07 53.6 7.2 64 231-300 41-108 (164)
193 3u1l_A PRE-mRNA-splicing facto 96.5 0.0023 7.9E-08 58.8 4.9 59 231-300 131-203 (240)
194 1qm9_A Polypyrimidine tract-bi 96.5 0.005 1.7E-07 52.1 6.5 73 231-318 117-196 (198)
195 2adc_A Polypyrimidine tract-bi 96.0 0.012 4.1E-07 51.6 6.8 73 231-318 148-227 (229)
196 3zzy_A Polypyrimidine tract-bi 96.0 0.044 1.5E-06 45.8 9.6 63 231-300 23-90 (130)
197 2e5i_A Heterogeneous nuclear r 95.7 0.066 2.3E-06 44.1 9.6 61 232-300 21-86 (124)
198 3v4m_A Splicing factor U2AF 65 95.7 0.022 7.4E-07 45.2 6.3 63 248-317 28-95 (105)
199 3tht_A Alkylated DNA repair pr 95.7 0.037 1.3E-06 53.3 9.1 64 230-301 14-81 (345)
200 3tyt_A Heterogeneous nuclear r 95.6 0.02 6.9E-07 50.1 6.5 62 232-299 121-188 (205)
201 2wbr_A GW182, gawky, LD47780P; 95.3 0.069 2.4E-06 42.3 7.9 63 236-314 9-76 (89)
202 3s6e_A RNA-binding protein 39; 94.3 0.11 3.6E-06 42.1 6.8 58 248-316 30-90 (114)
203 3ue2_A Poly(U)-binding-splicin 94.0 0.11 3.7E-06 42.3 6.3 61 249-316 39-106 (118)
204 3pq1_A Poly(A) RNA polymerase; 91.7 0.16 5.3E-06 50.9 4.9 58 233-299 52-109 (464)
205 2diu_A KIAA0430 protein; struc 91.2 0.75 2.6E-05 36.9 7.6 62 233-314 7-79 (96)
206 1owx_A Lupus LA protein, SS-B, 87.5 0.5 1.7E-05 39.1 4.1 58 245-310 29-87 (121)
207 3dxb_A Thioredoxin N-terminall 87.4 1.3 4.3E-05 38.3 6.8 62 248-316 142-210 (222)
208 3p3d_A Nucleoporin 53; structu 78.9 2.7 9.4E-05 35.5 5.1 69 244-316 14-96 (132)
209 2hl7_A Cytochrome C-type bioge 75.5 1.3 4.3E-05 34.7 2.0 18 247-264 60-77 (84)
210 2kw0_A CCMH protein; oxidoredu 74.8 1.3 4.6E-05 35.1 2.0 18 247-264 57-74 (90)
211 2dnr_A Synaptojanin-1; RRM dom 67.7 16 0.00056 28.7 6.8 54 250-318 30-85 (91)
212 2dhx_A Poly (ADP-ribose) polym 64.9 30 0.001 28.0 8.0 70 235-319 9-84 (104)
213 2l9w_A U4/U6 snRNA-associated- 62.8 26 0.00089 29.0 7.3 67 231-311 18-92 (117)
214 2dzr_A General transcription f 55.5 4.1 0.00014 32.9 1.3 58 243-308 3-82 (99)
215 1ufw_A Synaptojanin 2; RNP dom 45.3 37 0.0013 26.9 5.4 51 250-315 39-91 (95)
216 2dn5_A General transcription f 43.2 13 0.00044 29.4 2.3 62 244-308 4-82 (89)
217 1wwh_A Nucleoporin 35, nucleop 39.4 1.1E+02 0.0039 25.0 7.6 46 244-297 31-77 (119)
218 1i27_A Transcription factor II 28.0 34 0.0012 26.1 2.4 15 244-258 7-21 (73)
219 2jv8_A Uncharacterized protein 22.4 25 0.00084 26.0 0.7 19 300-318 17-45 (73)
220 1nha_A TFIIF-alpha, transcript 22.4 44 0.0015 26.0 2.1 16 243-258 15-30 (82)
No 1
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.68 E-value=9e-08 Score=76.29 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=64.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+++.||+|| +|.| ++++||+++|.+ ||. |+.|.|-..+.+++..+||+|.|.+.+....++.... ..++
T Consensus 21 ~~~~~~~lfV---~nLp~~~te~~L~~~F~~-~G~-i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~---~~l~ 92 (109)
T 2rs2_A 21 MGSSGCKMFI---GGLSWQTTQEGLREYFGQ-FGE-VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELD 92 (109)
T ss_dssp -----CCEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC---EEET
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHc-cCC-eEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC---CcCC
Confidence 4677899999 6877 999999999986 999 6666665543678999999999999999999987643 6899
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 93 g~~l~V~~a~~~ 104 (109)
T 2rs2_A 93 SKTIDPKVAFPR 104 (109)
T ss_dssp TEEEEEEECCCC
T ss_pred CEEEEEEEccCC
Confidence 999988876654
No 2
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.52 E-value=2.3e-07 Score=72.83 Aligned_cols=85 Identities=11% Similarity=0.219 Sum_probs=66.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCee----e
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKA----K 303 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~----k 303 (319)
.+.+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+...+.+++...||+|.|.+.+....++...+.. .
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 11 DVTEGKTVFI---RNLSFDSEEEALGEVLQQ-FGD-LKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred cCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3556789998 7887 999999999986 999 666776654367888999999999999988877643211 3
Q ss_pred EEEcCceeEEEeccCC
Q 038714 304 FSINGKHKIIQILKNN 319 (319)
Q Consensus 304 f~IngkhiWarky~pk 319 (319)
..|+|+.+-++...|+
T Consensus 86 ~~~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTR 101 (111)
T ss_dssp EESSSCEEEEECCCCC
T ss_pred cEEcCEEEEEEECCCC
Confidence 5789999988776654
No 3
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.51 E-value=4.4e-07 Score=69.91 Aligned_cols=82 Identities=10% Similarity=0.140 Sum_probs=64.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
+.+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+...+..++...||.|.|.+.+....++...+. ..|+|
T Consensus 5 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g 77 (99)
T 1whw_A 5 SSGSGRLFV---RNLSYTSSEEDLEKLFSA-YGP-LSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG--QVFQG 77 (99)
T ss_dssp CCSCEEEEE---ECCCTTCCHHHHHHHHHT-TSC-EEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT--EESSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC--CEECC
Confidence 567799999 6888 999999999986 998 67777765535788999999999999998877742221 36789
Q ss_pred ceeEEEeccCC
Q 038714 309 KHKIIQILKNN 319 (319)
Q Consensus 309 khiWarky~pk 319 (319)
+.+-++...|+
T Consensus 78 ~~l~V~~a~~~ 88 (99)
T 1whw_A 78 RMLHVLPSTIK 88 (99)
T ss_dssp CEEEEEECCCC
T ss_pred cEEEEEEcCCC
Confidence 99988776653
No 4
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=9.7e-07 Score=70.14 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=66.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
...+.+|+|| ++.| ++++||+++|.+ ||. |+.|.+-..+.+++...||+|.|.+.+....++...+. .|+
T Consensus 13 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~---~~~ 84 (116)
T 2cqd_A 13 KDTTFTKIFV---GGLPYHTTDASLRKYFEG-FGD-IEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP---IID 84 (116)
T ss_dssp CSCSSSEEEE---ECCCSSCCHHHHHHHHHT-TSC-EEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC---EET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-eeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC---cCC
Confidence 3567799998 6877 999999999985 999 66666655436788899999999999999999987663 599
Q ss_pred CceeEEEeccC
Q 038714 308 GKHKIIQILKN 318 (319)
Q Consensus 308 gkhiWarky~p 318 (319)
|+.+-++...+
T Consensus 85 g~~l~V~~a~~ 95 (116)
T 2cqd_A 85 GRKANVNLAYL 95 (116)
T ss_dssp TEECEEEESTT
T ss_pred CEEEEEEEccc
Confidence 99998776543
No 5
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=5.6e-07 Score=70.48 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=65.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEee-ecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQ-EVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSI 306 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq-~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~I 306 (319)
.+.+.+|+|| +|.| ++++||+++|.+ ||..|+.|.+- ..+.+++...||+|.|.+.+.....+..-+.-.+.+
T Consensus 4 ~s~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~ 79 (109)
T 2dis_A 4 GSSGNCRLFI---GGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL 79 (109)
T ss_dssp CCCCSEEEEE---ECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred cccCCCEEEE---eCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence 3567899998 7888 999999999997 99867777775 443667899999999999999888876432111368
Q ss_pred cCceeEEEeccC
Q 038714 307 NGKHKIIQILKN 318 (319)
Q Consensus 307 ngkhiWarky~p 318 (319)
+|+.+-++...|
T Consensus 80 ~g~~l~V~~a~~ 91 (109)
T 2dis_A 80 WGHQIAVDWAEP 91 (109)
T ss_dssp TTBCCEEEESCS
T ss_pred cCCeEEEEEcCC
Confidence 899887765554
No 6
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.48 E-value=3.6e-07 Score=70.65 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=62.4
Q ss_pred ceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCceeE
Q 038714 235 RTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGKHKI 312 (319)
Q Consensus 235 Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~IngkhiW 312 (319)
+++|| +|.| +||+||+++|.+ ||.-|++|.+-..+.+++..+||+|.|.+.+.....|.... -.+.|+|+.+-
T Consensus 2 ~~i~v---~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~-~~~~~~gr~i~ 76 (91)
T 2lxi_A 2 NIVML---RMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ-HSLNILGQKVS 76 (91)
T ss_dssp CEEEE---ETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT-TEEEETTEEEE
T ss_pred CEEEE---eCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC-CCeEECCEEEE
Confidence 46777 9999 999999999996 99547777654433778999999999999999888875321 13578999998
Q ss_pred EEeccCC
Q 038714 313 IQILKNN 319 (319)
Q Consensus 313 arky~pk 319 (319)
++...||
T Consensus 77 V~~a~~~ 83 (91)
T 2lxi_A 77 MHYSDPK 83 (91)
T ss_dssp EECCCSC
T ss_pred EEEcCCC
Confidence 8766554
No 7
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=2.2e-07 Score=72.48 Aligned_cols=82 Identities=12% Similarity=0.271 Sum_probs=65.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+++.|++|| +|.| ++++||+++|.+ ||. |+.|.+...+..++...||.|.|.+.+....+|.. + ...|+
T Consensus 12 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~--~~~~~ 83 (105)
T 2dh8_A 12 GADEIGKLFV---GGLDWSTTQETLRSYFSQ-YGE-VVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R--PHTLD 83 (105)
T ss_dssp CSSSSSEECC---BSCCTTCCHHHHHHHHHT-TSC-EEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C--SEEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C--CCeEC
Confidence 4667789987 7887 999999999997 999 55555544336788899999999999999888875 2 35789
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 84 g~~l~V~~a~~~ 95 (105)
T 2dh8_A 84 GRNIDPKPCTPR 95 (105)
T ss_dssp TEEEBCCCSCCS
T ss_pred CEEEEEEEccCC
Confidence 999987776654
No 8
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.45 E-value=3.4e-07 Score=71.07 Aligned_cols=78 Identities=17% Similarity=0.297 Sum_probs=63.9
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
..+.+|+|| +|.| ++++||+++|.+ ||+ |+.|.|-.. ..++...||+|.|.+.+.....+. -...++|
T Consensus 6 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g 75 (102)
T 2xs2_A 6 KIMPNTVFV---GGIDVRMDETEIRSFFAR-YGS-VKEVKIITD-RTGVSKGYGFVSFYNDVDVQKIVE----SQINFHG 75 (102)
T ss_dssp EEEEEEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEEEEEC-TTSCEEEEEEEEESSCCCHHHHTT----CCCEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-eEEEEEEEC-CCCCccceEEEEECCHHHHHHHHh----CCCeECC
Confidence 345689988 7877 999999999976 999 677777666 478889999999999999999998 2347999
Q ss_pred ceeEEEeccC
Q 038714 309 KHKIIQILKN 318 (319)
Q Consensus 309 khiWarky~p 318 (319)
+.+-+.+..|
T Consensus 76 ~~l~v~~a~~ 85 (102)
T 2xs2_A 76 KKLKLGPAIR 85 (102)
T ss_dssp EECEEEEEEE
T ss_pred EEEEEEECCc
Confidence 9998776654
No 9
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=4e-07 Score=72.51 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=60.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
..+.||+|| +|.| +|+++|+++|.. ||. |++|.|-..+. ++..+||+|.|.+++....+|. .+ ...++|
T Consensus 8 ~~~~~~lfV---~~Lp~~~te~~L~~~F~~-~G~-v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~--~~~~~g 78 (103)
T 1s79_A 8 DVKNRSVYI---KGFPTDATLDDIKEWLED-KGQ-VLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TP--GQKYKE 78 (103)
T ss_dssp CSGGGCEEE---ECCCTTCCHHHHHHHHHT-SSC-EEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SS--CCCCTT
T ss_pred cCCCCEEEE---ECCCCCCCHHHHHHHHhh-cCC-EEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cC--CCEECC
Confidence 456799998 8988 999999999996 999 66676665424 8999999999999999998887 22 236899
Q ss_pred ceeEEE
Q 038714 309 KHKIIQ 314 (319)
Q Consensus 309 khiWar 314 (319)
+.+-++
T Consensus 79 r~l~V~ 84 (103)
T 1s79_A 79 TDLLIL 84 (103)
T ss_dssp TTCEEE
T ss_pred EEEEEE
Confidence 988554
No 10
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.44 E-value=9.8e-07 Score=66.39 Aligned_cols=78 Identities=19% Similarity=0.371 Sum_probs=62.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+++.+++|| +|.| +++++|+++|.+ ||. |+.|.+-..+.+++...||.|.|.+.+....++.... -.|+
T Consensus 7 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~---~~~~ 78 (87)
T 3s7r_A 7 NEEDAGKMFV---GGLSWDTSKKDLKDYFTK-FGE-VVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE---HRLD 78 (87)
T ss_dssp CCSCTTEEEE---ECCCTTCCHHHHHHHHTT-TSC-EEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC---EEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC---CEEC
Confidence 3567799999 7887 999999999975 998 5556554432678889999999999999999887533 2599
Q ss_pred CceeEEEe
Q 038714 308 GKHKIIQI 315 (319)
Q Consensus 308 gkhiWark 315 (319)
|+.+-+++
T Consensus 79 g~~i~v~~ 86 (87)
T 3s7r_A 79 GRVIDPKK 86 (87)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEe
Confidence 99987764
No 11
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=8.7e-07 Score=68.85 Aligned_cols=81 Identities=14% Similarity=0.292 Sum_probs=65.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
..++.+++|| +|.| ++++||+++|.+ ||. |+.|.|-..+.+++...||+|.|.+.+....+|.. ...|+
T Consensus 11 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~----~~~~~ 81 (103)
T 2cqg_A 11 AVQKTSDLIV---LGLPWKTTEQDLKEYFST-FGE-VLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ----RHMID 81 (103)
T ss_dssp CCCCCCCEEE---ESCCSSCCHHHHHHHHGG-GSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS----CEEET
T ss_pred ccCCCCEEEE---EcCCCcCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc----CCeeC
Confidence 4567789998 6777 999999999986 999 55666654436788899999999999999998883 23899
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 82 g~~l~v~~a~~~ 93 (103)
T 2cqg_A 82 GRWCDCKLPNSK 93 (103)
T ss_dssp TEEEEEECCCTT
T ss_pred CeEEEEEecCCC
Confidence 999988876654
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.42 E-value=5.4e-07 Score=67.54 Aligned_cols=82 Identities=9% Similarity=0.080 Sum_probs=60.6
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
..+.+++|| +|.| ++++||+++|.+ ||. |+.|.+-..+..++...||.|.|.+.+....++..-+. ..|+|
T Consensus 3 ~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g 75 (87)
T 3bs9_A 3 LGSHFHVFV---GDLSPEITTAAIAAAFAP-FGR-ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWLGG 75 (87)
T ss_dssp ---CEEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred CCCceEEEE---eCCCCCCCHHHHHHHHHh-cCC-EeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEECC
Confidence 346789998 7877 999999999996 999 66666655436788899999999999998777652111 25899
Q ss_pred ceeEEEeccCC
Q 038714 309 KHKIIQILKNN 319 (319)
Q Consensus 309 khiWarky~pk 319 (319)
+.+-++...||
T Consensus 76 ~~l~v~~a~~k 86 (87)
T 3bs9_A 76 RQIRTNWATRK 86 (87)
T ss_dssp EECEEEEEC--
T ss_pred eEEEEEecCCC
Confidence 99977766554
No 13
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=1.2e-06 Score=67.77 Aligned_cols=79 Identities=15% Similarity=0.360 Sum_probs=62.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+++.+++|| +|.| ++++||+++|.+ ||. |+.|.+...+..++...||.|.|.+.+....++ +|.
T Consensus 8 ~~~~~~~l~v---~nLp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----- 77 (102)
T 1x5s_A 8 MASDEGKLFV---GGLSFDTNEQSLEQVFSK-YGQ-ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK----- 77 (102)
T ss_dssp CCCCCSEEEE---ESCCTTCCHHHHHHHHHH-HSC-CCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC-----
Confidence 5678899999 6877 999999999986 999 666666554367888899999999999877766 554
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
.|+|+.+-++...|
T Consensus 78 ~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 78 SVDGRQIRVDQAGK 91 (102)
T ss_dssp CTTSCCCEEEEEEC
T ss_pred EECCeEEEEEECCC
Confidence 37898886665544
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=8.4e-07 Score=68.46 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=63.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.|++|| +|.| ++++||+++|.+ ||. |+.|.+-..+..++...||.|.|.+.+....++. .+ ...|+
T Consensus 6 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~--~~~~~ 77 (99)
T 2dgs_A 6 SGSKSNKIFV---GGIPHNCGETELREYFKK-FGV-VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH--FHDIM 77 (99)
T ss_dssp CCSSCCEEEE---ESCCSSCCHHHHHHHHSS-SSC-EEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC--CCBSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC--CCEEC
Confidence 3567799998 7887 999999999997 998 5555554432678899999999999999877775 21 12578
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 78 g~~l~V~~a~~~ 89 (99)
T 2dgs_A 78 GKKVEVKRAEPR 89 (99)
T ss_dssp SCBCEEEECCCC
T ss_pred CeEEEEEECCCC
Confidence 999988776654
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=9e-07 Score=68.86 Aligned_cols=83 Identities=13% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
-+...+++|| +|.| +++++|+++|.+ ||. |+.|.+-.....++...||.|.|.+.+....++..-+. ..|+
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 83 (105)
T 1x5u_A 11 ERNQDATVYV---GGLDEKVSEPLLWELFLQ-AGP-VVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM--IKLY 83 (105)
T ss_dssp CCCTTTEEEE---ECCCTTCCHHHHHHHHHT-TSC-EEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS--CBCS
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC--CeEC
Confidence 3567799999 6877 999999999997 998 66676665435788899999999999998887753221 2489
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 84 g~~l~v~~a~~~ 95 (105)
T 1x5u_A 84 GKPIRVNKASAH 95 (105)
T ss_dssp SCBCEEEETTTT
T ss_pred CeEEEEEECCCC
Confidence 999988876553
No 16
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.1e-06 Score=67.94 Aligned_cols=82 Identities=11% Similarity=0.213 Sum_probs=65.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+... ..++...||.|.|.+.+....++..-+. ..|+
T Consensus 13 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 84 (100)
T 2do4_A 13 TSLEKHKLFI---SGLPFSCTKEELEEICKA-HGT-VKDLRLVTN-RAGKPKGLAYVEYENESQASQAVMKMDG--MTIK 84 (100)
T ss_dssp SCCCCSCEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTT--EESS
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-eEEEEEEEC-CCCCEEeEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4567799999 6888 999999999996 998 677777666 4788889999999999998877742111 3689
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 85 g~~l~v~~a~~~ 96 (100)
T 2do4_A 85 ENIIKVAISNSG 96 (100)
T ss_dssp SCEEEEEECCCC
T ss_pred CEEEEEEECCCC
Confidence 999988776654
No 17
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.39 E-value=1.1e-06 Score=65.99 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=61.1
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCce
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGKH 310 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ingkh 310 (319)
+.||+|| +|.| ++++||+++|.+ ||. |+.|.+......++...||.|.|.+.+....++ ..+. ..++|+.
T Consensus 5 ~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g--~~~~g~~ 76 (89)
T 3ucg_A 5 DARSIYV---GNVDYGATAEELEAHFHG-CGS-VNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDE--SLFRGRQ 76 (89)
T ss_dssp HHTEEEE---ESCCTTCCHHHHHHHHGG-GCC-EEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTT--CEETTEE
T ss_pred cCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCC--CEECCcE
Confidence 4689988 6887 899999999996 998 666666543267889999999999999988887 3222 2489999
Q ss_pred eEEEeccC
Q 038714 311 KIIQILKN 318 (319)
Q Consensus 311 iWarky~p 318 (319)
+-++...|
T Consensus 77 l~V~~a~~ 84 (89)
T 3ucg_A 77 IKVIPKRT 84 (89)
T ss_dssp CEEEETTT
T ss_pred EEEEEccC
Confidence 97776544
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.39 E-value=1e-06 Score=69.70 Aligned_cols=83 Identities=8% Similarity=0.121 Sum_probs=64.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+|||| +|.| ++++||+++|.+ ||. |+.|.+......++...||+|.|.+.+....++...+. ..|+
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 83 (115)
T 2dgo_A 11 DTSNHFHVFV---GDLSPEITTEDIKAAFAP-FGR-ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWLG 83 (115)
T ss_dssp CSTTCEEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--CEET
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4667899999 6887 999999999995 999 66666655425788899999999999998877642221 2589
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 84 g~~l~V~~a~~~ 95 (115)
T 2dgo_A 84 GRQIRTNWATRK 95 (115)
T ss_dssp TEECEEEESSCC
T ss_pred CEEEEEEEccCC
Confidence 999987766553
No 19
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=1.6e-06 Score=68.95 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=65.2
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
+++.+++|| +|.| ++++||+++|.+ ||.+ +.|.+...+.+++...||+|.|.+.+....+|.. + ...|+|
T Consensus 24 ~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~--~~~~~g 95 (116)
T 1x4b_A 24 KEQFRKLFI---GGLSFETTEESLRNYYEQ-WGKL-TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R--PHSIDG 95 (116)
T ss_dssp HHHHTEEEE---ECCTTCCCHHHHHHHHTS-SCCC-SEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C--SEEETT
T ss_pred cCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCCE-EEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C--CcEECC
Confidence 445689998 7887 999999999975 9995 4555544326788899999999999999999987 3 357899
Q ss_pred ceeEEEeccCC
Q 038714 309 KHKIIQILKNN 319 (319)
Q Consensus 309 khiWarky~pk 319 (319)
+.+-++...||
T Consensus 96 ~~l~V~~a~~~ 106 (116)
T 1x4b_A 96 RVVEPKRAVAR 106 (116)
T ss_dssp EEEEEECCSSC
T ss_pred EEEEEEECCCC
Confidence 99988877664
No 20
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=7.7e-07 Score=67.88 Aligned_cols=79 Identities=13% Similarity=0.296 Sum_probs=62.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~ 305 (319)
++..+++|| +|.| ++++||+++|.+ ||. |+.|.+.....+++...||.|.|.+.+....++ +|. .
T Consensus 2 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-----~ 71 (95)
T 2dnz_A 2 SSGSSGLYV---GSLHFNITEDMLRGIFEP-FGK-IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF-----E 71 (95)
T ss_dssp CSCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC-----C
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-EeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC-----e
Confidence 456789999 6877 999999999986 999 555655544367888999999999999877765 453 4
Q ss_pred EcCceeEEEeccCC
Q 038714 306 INGKHKIIQILKNN 319 (319)
Q Consensus 306 IngkhiWarky~pk 319 (319)
|+|+.+-++...|+
T Consensus 72 ~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 72 LAGRPMRVGHVTER 85 (95)
T ss_dssp SSSSCCEEEESSCC
T ss_pred eCCcEEEEEEcccc
Confidence 78999988776654
No 21
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=1.3e-06 Score=68.05 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=63.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCC-CCCCceEEEEecchhhHHHHhCCCCeeeEEE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASS-TEQPLFARLVMDSASFMDVVLGGKSKAKFSI 306 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~-~~qplfariVf~s~~~v~~vL~g~~~~kf~I 306 (319)
..+..+|+|| +|.| ++++||+++|.. || |+.|.|-..... ++...||.|.|.+.+....+| ..+. ..|
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~~ 81 (104)
T 1wi8_A 11 PKSPPYTAFL---GNLPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--ESL 81 (104)
T ss_dssp CSSSCEEEEE---ESCCSSCCHHHHHHHTTT-SC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGT--CEE
T ss_pred CCCCCCEEEE---eCCCCcCCHHHHHHHHHH-CC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCC--CEe
Confidence 3456689988 6877 999999999996 89 888888664344 888999999999999988887 3222 258
Q ss_pred cCceeEEEeccCC
Q 038714 307 NGKHKIIQILKNN 319 (319)
Q Consensus 307 ngkhiWarky~pk 319 (319)
+|+.+.++...|+
T Consensus 82 ~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 82 GNKRIRVDVADQA 94 (104)
T ss_dssp TTEECEEEECCCC
T ss_pred CCcEEEEEEccCC
Confidence 9999988876553
No 22
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=7.4e-07 Score=69.27 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=64.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
.++.+++|| +|.| ++++||+++|.+ ||. |+.|.+...+..++...||.|.|.+.+....++...+. ..|+|
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g 84 (103)
T 2cq0_A 12 ADDNATIRV---TNLSEDTRETDLQELFRP-FGS-ISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG--FGYDH 84 (103)
T ss_dssp CSSSEEEEE---ESCCTTCCHHHHHTTSTT-TCC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT--CEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-eEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC--CeeCC
Confidence 567799998 6888 999999999996 999 66666655436788899999999999998777652221 24899
Q ss_pred ceeEEEeccCC
Q 038714 309 KHKIIQILKNN 319 (319)
Q Consensus 309 khiWarky~pk 319 (319)
+.+-++...|+
T Consensus 85 ~~l~v~~a~~~ 95 (103)
T 2cq0_A 85 LILNVEWAKPS 95 (103)
T ss_dssp EECEEEESSCC
T ss_pred cEEEEEECCCC
Confidence 99988766553
No 23
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.35 E-value=2.1e-06 Score=64.04 Aligned_cols=75 Identities=15% Similarity=0.315 Sum_probs=59.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+.+.|++|| +|.| ++++||+++|.+ ||. |+.|.+-..+..++...||.|.|.+.+....++ +|.
T Consensus 3 ~~~~~~~l~V---~nl~~~~~~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~----- 72 (85)
T 3mdf_A 3 MATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD-ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES----- 72 (85)
T ss_dssp CCCCSSEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHhc-cCC-EEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC-----
Confidence 3567799998 7887 999999999986 998 666666443367888999999999999877766 553
Q ss_pred EEcCceeEEE
Q 038714 305 SINGKHKIIQ 314 (319)
Q Consensus 305 ~IngkhiWar 314 (319)
.|+|+.+-++
T Consensus 73 ~~~g~~l~v~ 82 (85)
T 3mdf_A 73 ELFGRTIRVN 82 (85)
T ss_dssp EETTEECEEE
T ss_pred EECCcEEEEE
Confidence 4789988665
No 24
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.35 E-value=1.6e-06 Score=67.54 Aligned_cols=81 Identities=10% Similarity=0.168 Sum_probs=64.2
Q ss_pred cCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEE
Q 038714 229 TVPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSI 306 (319)
Q Consensus 229 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~I 306 (319)
..++..+++|| +|.| ++++||+++|.+ || |+.|.|-..+.+++...||+|.|.+.+....+| ..+ ...|
T Consensus 10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~--g~~~ 80 (103)
T 2dng_A 10 LPTEPPYTAYV---GNLPFNTVQGDIDAIFKD-LS--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD--GALL 80 (103)
T ss_dssp CCSSSCEEEEE---ESCCTTCCHHHHHHHTTT-SC--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT--TCEE
T ss_pred CCCCCCeEEEE---eCCCCCCCHHHHHHHHHh-CC--ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC--CCeE
Confidence 34667799998 6887 999999999997 77 777877665367888999999999999988888 322 2468
Q ss_pred cCceeEEEeccC
Q 038714 307 NGKHKIIQILKN 318 (319)
Q Consensus 307 ngkhiWarky~p 318 (319)
+|+.+-++...|
T Consensus 81 ~g~~l~V~~a~~ 92 (103)
T 2dng_A 81 GDRSLRVDIAEG 92 (103)
T ss_dssp TTEECEEEECCC
T ss_pred CCeEEEEEEecC
Confidence 999987776554
No 25
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=1.9e-06 Score=65.84 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=61.9
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEE-EeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAI-NMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v-~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
.+.+|+|| +|.| ++++||+++|.+ ||.. +.+ .+-..+..++...||.|.|.+.+....++...+.. .|+|
T Consensus 3 ~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~i-~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g 75 (96)
T 1x5t_A 3 SGSSGIFI---GNLDPEIDEKLLYDTFSA-FGVI-LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ--YLCN 75 (96)
T ss_dssp SCCCEEEE---ECCCTTCCHHHHHHHHHT-TSCB-SSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC--EETT
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-cCCe-eEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECC
Confidence 45689999 6888 999999999997 9984 444 44333267888999999999999988887643322 3799
Q ss_pred ceeEEEeccCC
Q 038714 309 KHKIIQILKNN 319 (319)
Q Consensus 309 khiWarky~pk 319 (319)
+.+-++...|+
T Consensus 76 ~~l~v~~a~~~ 86 (96)
T 1x5t_A 76 RPITVSYAFKK 86 (96)
T ss_dssp EECEEEESCCC
T ss_pred EEEEEEEeccc
Confidence 99987766553
No 26
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=9.2e-07 Score=70.65 Aligned_cols=82 Identities=10% Similarity=0.085 Sum_probs=65.9
Q ss_pred cCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEE
Q 038714 229 TVPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSI 306 (319)
Q Consensus 229 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~I 306 (319)
..+.+.+|+|| +|.| ++++||++||.. ||..-+.|.|-.. ..++...||+|.|.+++.....|.- + ...|
T Consensus 10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d-~~g~~~G~afV~F~~~~~a~~Al~~-~--~~~~ 81 (114)
T 2cpy_A 10 DVNSAKVCAHI---TNIPFSITKMDVLQFLEG-IPVDENAVHVLVD-NNGQGLGQALVQFKNEDDARKSERL-H--RKKL 81 (114)
T ss_dssp SCCSCCCEEEE---ESCCTTSCHHHHHHHTTT-SCCCSTTEEECCC-TTSSCSSCEEEECSSHHHHHHHGGG-C--SEEE
T ss_pred CCCCCccEEEE---eCcCCcCCHHHHHHHHHh-CCCcCCeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-C--CCcc
Confidence 45778899988 8988 999999999987 8873256666555 4788999999999999999999875 2 3578
Q ss_pred cCceeEEEeccC
Q 038714 307 NGKHKIIQILKN 318 (319)
Q Consensus 307 ngkhiWarky~p 318 (319)
+|+.+.++...|
T Consensus 82 ~gr~i~v~~a~~ 93 (114)
T 2cpy_A 82 NGREAFVHVVTL 93 (114)
T ss_dssp TTEEEEEEEECH
T ss_pred CCeEEEEEECCH
Confidence 999998776543
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.33 E-value=2.7e-06 Score=66.14 Aligned_cols=82 Identities=13% Similarity=0.296 Sum_probs=63.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeec-CCCCCCCceEEEEecchhhHHHHhCCC-CeeeEE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEV-ASSTEQPLFARLVMDSASFMDVVLGGK-SKAKFS 305 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~-~~~~~qplfariVf~s~~~v~~vL~g~-~~~kf~ 305 (319)
...+.+++|| +|.| ++++||+++|.+ ||. |+.|.|... +..++...||+|.|.+.+....++... + ...
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~ 83 (107)
T 2cph_A 11 KKQTTSKILV---RNIPFQANQREIRELFST-FGE-LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH--STH 83 (107)
T ss_dssp CSSCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT--CCB
T ss_pred cCCCCCEEEE---eCCCCcCCHHHHHHHHHc-cCC-eEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhcc--CCe
Confidence 3556789998 7877 999999999997 998 677777554 357899999999999999987776421 1 124
Q ss_pred EcCceeEEEeccC
Q 038714 306 INGKHKIIQILKN 318 (319)
Q Consensus 306 IngkhiWarky~p 318 (319)
|+|+.+-++...|
T Consensus 84 ~~g~~l~v~~a~~ 96 (107)
T 2cph_A 84 LYGRRLVLEWADS 96 (107)
T ss_dssp SSSCBCEEEECCC
T ss_pred ECCCEEEEEeCCC
Confidence 7899887766554
No 28
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.31 E-value=6.4e-07 Score=69.86 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=60.5
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecC-CCCCCCceEEEEecchhhHHHHhCCCCeeeEEE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVA-SSTEQPLFARLVMDSASFMDVVLGGKSKAKFSI 306 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~-~~~~qplfariVf~s~~~v~~vL~g~~~~kf~I 306 (319)
.+...||+|| +|.| ++++||+++|.+ || |+.|.|-..+ ..++..+||.|.|.+.+.....+ ..+. ..|
T Consensus 15 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g--~~~ 85 (100)
T 2j76_E 15 PKSPPYTAFL---GNLPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--ESL 85 (100)
T ss_dssp -----CEEEE---SCCSSCCSSSHHHHHSCS-SC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTT--CCB
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCC--CEE
Confidence 4667799998 8988 999999999996 99 8888887653 37888999999999999988777 3222 248
Q ss_pred cCceeEEEeccC
Q 038714 307 NGKHKIIQILKN 318 (319)
Q Consensus 307 ngkhiWarky~p 318 (319)
+|+.+-++...|
T Consensus 86 ~g~~l~V~~a~~ 97 (100)
T 2j76_E 86 GNRRIRVDVADQ 97 (100)
T ss_dssp TTBCCCCEECCC
T ss_pred CCeEEEEEeccC
Confidence 999987766554
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=1e-06 Score=68.39 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=61.2
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf~ 305 (319)
.++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+...+.+++...||.|.|.+.+....++. |. .
T Consensus 10 ~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-----~ 79 (103)
T 2dnm_A 10 VDGMITLKV---DNLTYRTSPDSLRRVFEK-YGR-VGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA-----E 79 (103)
T ss_dssp CSCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC-----C
T ss_pred CCCCeEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC-----E
Confidence 456789998 6887 999999999996 999 6777776543668889999999999988777654 43 3
Q ss_pred EcCceeEEEecc
Q 038714 306 INGKHKIIQILK 317 (319)
Q Consensus 306 IngkhiWarky~ 317 (319)
|+|+.+-++...
T Consensus 80 ~~g~~l~V~~a~ 91 (103)
T 2dnm_A 80 LDGRELRVQVAR 91 (103)
T ss_dssp BTTBCCEEEECS
T ss_pred ECCcEEEEEECC
Confidence 889988776554
No 30
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.31 E-value=1.1e-06 Score=72.39 Aligned_cols=77 Identities=17% Similarity=0.327 Sum_probs=62.5
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCce
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGKH 310 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ingkh 310 (319)
+.|++|| +|.| ++++||+++|.+ ||. |+.|.+-..+.+++..+||.|.|.+++.....+.... .++|+.
T Consensus 2 ~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~----~~~g~~ 72 (167)
T 2cjk_A 2 ESCKMFI---GGLNWDTTEDNLREYFGK-YGT-VTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQH----ILDGKV 72 (167)
T ss_dssp GGGEEEE---CSCCTTCCHHHHHHHHTT-TCC-EEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCC----EETTEE
T ss_pred CCcEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEEECCCCCCccceEEEEEccHHHHHHHHhccc----ccCCeE
Confidence 5689998 8988 999999999986 999 5666654432678999999999999999988888533 789999
Q ss_pred eEEEeccC
Q 038714 311 KIIQILKN 318 (319)
Q Consensus 311 iWarky~p 318 (319)
+.++...|
T Consensus 73 i~v~~~~~ 80 (167)
T 2cjk_A 73 IDPKRAIP 80 (167)
T ss_dssp CCCEECCC
T ss_pred cccccccc
Confidence 87765443
No 31
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=9.2e-07 Score=70.65 Aligned_cols=82 Identities=26% Similarity=0.326 Sum_probs=60.8
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCC---CCCCceEEEEecchhhHHHHh------CCC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASS---TEQPLFARLVMDSASFMDVVL------GGK 299 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~---~~qplfariVf~s~~~v~~vL------~g~ 299 (319)
..+.|++|| +|.| ++++||+++|.+ ||.+. ...+.+. .. ++...||+|.|.+++....++ +|.
T Consensus 5 ~~~~~~lfV---gnLp~~~te~~L~~~F~~-~G~i~-~~~~~~~-~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~ 78 (114)
T 2dnl_A 5 SSGSRKVFV---GGLPPDIDEDEITASFRR-FGPLV-VDWPHKA-ESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGK 78 (114)
T ss_dssp SSCCCCEEE---ECCCTTCCHHHHHHHTTT-TCCCC-EECTTSS-SSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTE
T ss_pred CCCCCEEEE---cCCCCCCCHHHHHHHHHh-cCCEE-EEEeecC-CCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCc
Confidence 466799999 7887 999999999996 99966 4444443 33 688999999999999988777 443
Q ss_pred CeeeE---EEcCceeEEEeccC
Q 038714 300 SKAKF---SINGKHKIIQILKN 318 (319)
Q Consensus 300 ~~~kf---~IngkhiWarky~p 318 (319)
....- .+.+|.+++|.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~v~p~~~ 100 (114)
T 2dnl_A 79 LYLCVSSPTIKDKPVQIRPWNL 100 (114)
T ss_dssp EEEEECCSSSCSEEEEEECCCC
T ss_pred EEEeccCCCcCCCeeeccCCcc
Confidence 21111 46677888887654
No 32
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=2e-06 Score=65.12 Aligned_cols=74 Identities=19% Similarity=0.377 Sum_probs=59.8
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCc
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGK 309 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ingk 309 (319)
...||+|| +|.| ++++||+++|.+ ||. |+.|.+-. ....||.|.|.+.+..+. ++|. .+.++|+
T Consensus 3 ~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~-----~~~g~afV~f~~~~~a~~-~~~~---~~~~~g~ 68 (88)
T 1wf0_A 3 SGSSGVFV---GRCTGDMTEDELREFFSQ-YGD-VMDVFIPK-----PFRAFAFVTFADDQIAQS-LCGE---DLIIKGI 68 (88)
T ss_dssp SCCCEEEE---ESCCSSSCHHHHHHHSTT-TSC-CCEEECCS-----SCCSCCEEECSCHHHHHH-TTTC---EEEETTE
T ss_pred CCCcEEEE---eCCCCCCCHHHHHHHHHH-cCC-eeEEEEec-----CCCCEEEEEECCHHHHHH-HhcC---CceeCCE
Confidence 45689999 7887 999999999986 999 66676633 257899999999999876 4554 6889999
Q ss_pred eeEEEeccCC
Q 038714 310 HKIIQILKNN 319 (319)
Q Consensus 310 hiWarky~pk 319 (319)
.+-+....|+
T Consensus 69 ~l~v~~a~~~ 78 (88)
T 1wf0_A 69 SVHISNAEPK 78 (88)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9988877664
No 33
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.30 E-value=2.3e-06 Score=64.00 Aligned_cols=76 Identities=13% Similarity=0.282 Sum_probs=58.6
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCC-CCceEEEEecchhhHHHHhC---CCCeeeEEE
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTE-QPLFARLVMDSASFMDVVLG---GKSKAKFSI 306 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~-qplfariVf~s~~~v~~vL~---g~~~~kf~I 306 (319)
..+|+|| +|.| ++++||+++|.+ ||+ |+.+.+......+. ...||.|.|.+.+....++. |. .|
T Consensus 3 ~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-----~~ 72 (88)
T 4a8x_A 3 KPTKVHI---GRLTRNVTKDHIMEIFST-YGK-IKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG-----QI 72 (88)
T ss_dssp CCCEEEE---ECCCTTCCHHHHHHHHHT-TSC-EEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC-----EE
T ss_pred CCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC-----eE
Confidence 4578988 7887 999999999986 998 56666654323333 78999999999999777754 43 58
Q ss_pred cCceeEEEeccC
Q 038714 307 NGKHKIIQILKN 318 (319)
Q Consensus 307 ngkhiWarky~p 318 (319)
+|+.+-++.+.|
T Consensus 73 ~g~~l~v~~a~~ 84 (88)
T 4a8x_A 73 DGQEITATAVLA 84 (88)
T ss_dssp TTEECEEEEECC
T ss_pred CCeEEEEEECCC
Confidence 999998877655
No 34
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.29 E-value=8.8e-07 Score=64.88 Aligned_cols=73 Identities=16% Similarity=0.287 Sum_probs=59.4
Q ss_pred ceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCceeE
Q 038714 235 RTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGKHKI 312 (319)
Q Consensus 235 Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~IngkhiW 312 (319)
+|+|| +|.| ++++||+++|.+ ||+ |+.+.+...+.+++...||.|.|.+.+....++...+ ..++|+.+-
T Consensus 1 ~~l~v---~nlp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~---~~~~g~~l~ 72 (77)
T 1uaw_A 1 CKMFI---GGLSWQTTQEGLREYFGQ-FGE-VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTID 72 (77)
T ss_dssp CCEEE---ESCCSSCCSHHHHHHHTT-TSC-CCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT---CCCSSCCCE
T ss_pred CEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC---CccCCEEEE
Confidence 46777 7877 999999999986 999 5666665543678899999999999999999998655 578999886
Q ss_pred EEe
Q 038714 313 IQI 315 (319)
Q Consensus 313 ark 315 (319)
++.
T Consensus 73 v~~ 75 (77)
T 1uaw_A 73 PKV 75 (77)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
No 35
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.29 E-value=4e-06 Score=64.41 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=59.9
Q ss_pred CceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEEEcC
Q 038714 234 ERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFSING 308 (319)
Q Consensus 234 ~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~Ing 308 (319)
.|++|| +|.| ++++||+++|.+ ||. |++|.+-..+.+++...||.|.|.+.+....++ +|. .|+|
T Consensus 2 ~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-----~~~g 71 (96)
T 2x1f_A 2 SRVVYL---GSIPYDQTEEQILDLCSN-VGP-VINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY-----QLGS 71 (96)
T ss_dssp CSEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC-----EETT
T ss_pred CcEEEE---ECCCCCCCHHHHHHHHHh-cCC-EEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-----eECC
Confidence 478988 6877 999999999996 998 666776554367888999999999999877766 452 6899
Q ss_pred ceeEEEeccC
Q 038714 309 KHKIIQILKN 318 (319)
Q Consensus 309 khiWarky~p 318 (319)
+.+-++...|
T Consensus 72 ~~l~V~~a~~ 81 (96)
T 2x1f_A 72 RFLKCGYSSN 81 (96)
T ss_dssp EECEEEECSC
T ss_pred eEEEEEEcCC
Confidence 9887776544
No 36
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.28 E-value=1.7e-06 Score=67.98 Aligned_cols=82 Identities=13% Similarity=0.134 Sum_probs=62.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
...+.+|+|| +|.| ++++||+++|.+ ||. |+.|.|-..+..++...||.|.|.+.+....++..-+. ..|+
T Consensus 22 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~ 94 (110)
T 1oo0_B 22 RSVEGWILFV---TSIHEEAQEDEIQEKFCD-YGE-IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIM 94 (110)
T ss_dssp CBTTBEEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 3556789998 7888 999999999986 998 67777754436788899999999999987776542111 1579
Q ss_pred CceeEEEeccC
Q 038714 308 GKHKIIQILKN 318 (319)
Q Consensus 308 gkhiWarky~p 318 (319)
|+.+-++...|
T Consensus 95 g~~l~V~~a~~ 105 (110)
T 1oo0_B 95 GQTIQVDWCFV 105 (110)
T ss_dssp TEECEEEESEE
T ss_pred CcEEEEEEccc
Confidence 99986665443
No 37
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.28 E-value=1.7e-06 Score=72.95 Aligned_cols=81 Identities=14% Similarity=0.329 Sum_probs=64.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
-+++.|++|| +|.| ++++||+++|.+ ||...+...+.+. .++...+||+|.|.+.+.....|.... ..++
T Consensus 9 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~---~~~~ 80 (196)
T 1l3k_A 9 EPEQLRKLFI---GGLSFETTDESLRSHFEQ-WGTLTDCVVMRDP-NTKRSRGFGFVTYATVEEVDAAMNARP---HKVD 80 (196)
T ss_dssp CCGGGGEEEE---ESCCTTCCHHHHHHHHGG-GSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHTCS---CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCCEEEEEEEEcC-CCCCccceEEEEeCCHHHHHHHHhcCC---CEEC
Confidence 4678899999 7888 999999999996 9994444444444 678889999999999999999987522 4689
Q ss_pred CceeEEEeccC
Q 038714 308 GKHKIIQILKN 318 (319)
Q Consensus 308 gkhiWarky~p 318 (319)
|+.+.++...+
T Consensus 81 g~~l~v~~~~~ 91 (196)
T 1l3k_A 81 GRVVEPKRAVS 91 (196)
T ss_dssp TEECEEEECCC
T ss_pred CEEeeeecccC
Confidence 99988776543
No 38
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=2.7e-06 Score=66.02 Aligned_cols=81 Identities=10% Similarity=0.195 Sum_probs=60.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.|-.. . +....||.|.|.+.+....++..-+. ..|+
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~-~-~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 81 (103)
T 2cq3_A 11 SKSTPKRLHV---SNIPFRFRDPDLRQMFGQ-FGK-ILDVEIIFN-E-RGSKGFGFVTFENSADADRAREKLHG--TVVE 81 (103)
T ss_dssp CSCCCCEEEE---ESCCTTCCHHHHHHHGGG-TSC-EEEEEEECC-T-TTTCCEEEEEESCHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEec-C-CCCcEEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4567799999 6887 999999999986 999 666666553 2 33788999999999998777642111 1489
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 82 g~~l~v~~a~~~ 93 (103)
T 2cq3_A 82 GRKIEVNNATAR 93 (103)
T ss_dssp TEECEEEECCSS
T ss_pred CEEEEEEEcccC
Confidence 999987766553
No 39
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.28 E-value=1.5e-06 Score=69.02 Aligned_cols=78 Identities=15% Similarity=0.313 Sum_probs=60.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
..++.+|+|| +|.| ++++||+++|.+ ||. |+.|.|-..+.+++...||+|.|.+.+.....+..-+. ..|+
T Consensus 36 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 108 (118)
T 2khc_A 36 EGPEGCNLFI---YHLPQEFTDTDLASTFLP-FGN-VISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG--FQVG 108 (118)
T ss_dssp CCCCSEEEEE---ECSCTTCCHHHHHHHTTT-SCE-EEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 3567799998 7887 999999999996 998 66666654436788999999999999998877753221 2588
Q ss_pred CceeEEE
Q 038714 308 GKHKIIQ 314 (319)
Q Consensus 308 gkhiWar 314 (319)
|+.+-++
T Consensus 109 g~~l~V~ 115 (118)
T 2khc_A 109 TKRLKVQ 115 (118)
T ss_dssp TEECCEE
T ss_pred CEEEEEE
Confidence 9888554
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.27 E-value=3.2e-06 Score=67.03 Aligned_cols=83 Identities=14% Similarity=0.293 Sum_probs=63.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
..++.+++|| +|.| ++++||+++|.+ ||. |+.|.|...+..++...||+|.|.+.+....++...+. ..|+
T Consensus 21 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 93 (115)
T 2cpz_A 21 EGPEGANLFI---YHLPQEFGDQDLLQMFMP-FGN-VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG--FQIG 93 (115)
T ss_dssp CCSTTCCEEE---ESCCSSCCHHHHHHHHGG-GSC-CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEET
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 3456789998 7888 999999999996 999 55665554425788899999999999998877742111 2589
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 94 g~~l~V~~a~~~ 105 (115)
T 2cpz_A 94 MKRLKVQLKRSK 105 (115)
T ss_dssp TEECEEECCCCS
T ss_pred CEEEEEEEcCCC
Confidence 999987766543
No 41
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=3.3e-06 Score=64.19 Aligned_cols=78 Identities=10% Similarity=0.255 Sum_probs=60.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+++.+++|| +|.| ++++||+++|.+ ||. |+.|.+...+.+++...||.|.|.+.+....++...+. ..|+
T Consensus 12 ~~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 84 (94)
T 2e5h_A 12 LAPSKSTVYV---SNLPFSLTNNDLYRIFSK-YGK-VVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN--KQLF 84 (94)
T ss_dssp CCCCTTSEEE---ESCCTTSCHHHHHHHTTT-TSC-EEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT--EEET
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC--CeeC
Confidence 4677899999 6888 999999999986 999 66777765436688899999999999998777642221 3578
Q ss_pred CceeEEE
Q 038714 308 GKHKIIQ 314 (319)
Q Consensus 308 gkhiWar 314 (319)
|+.+-++
T Consensus 85 g~~l~v~ 91 (94)
T 2e5h_A 85 GRVIKAS 91 (94)
T ss_dssp TEEEEEE
T ss_pred CcEEEEE
Confidence 9887554
No 42
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=1.6e-06 Score=67.08 Aligned_cols=83 Identities=14% Similarity=0.286 Sum_probs=63.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+-..+..++...||.|.|.+.+....++..-+. ..|+
T Consensus 8 ~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 80 (102)
T 2cqb_A 8 MATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD-ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SELF 80 (102)
T ss_dssp SCCCCSCEEE---ESCCSSCCHHHHHHHHTT-TSC-CCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT--EEET
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHhhc-cCC-EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4677899999 6877 999999999987 999 55566544336788999999999999987777642111 3589
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 81 g~~l~V~~a~~~ 92 (102)
T 2cqb_A 81 GRTIRVNLAKPM 92 (102)
T ss_dssp TEEEEEEECCCC
T ss_pred CcEEEEEeCCCC
Confidence 999987766553
No 43
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.26 E-value=2.2e-06 Score=62.55 Aligned_cols=72 Identities=21% Similarity=0.378 Sum_probs=57.1
Q ss_pred eEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCceeEE
Q 038714 236 TIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGKHKII 313 (319)
Q Consensus 236 t~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~IngkhiWa 313 (319)
|+|| +|.| ++++||+++|.+ ||+ |+.+.+-..+.+++...||.|.|.+.+....++.... ..|+|+.+-+
T Consensus 1 ~l~v---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~---~~~~g~~l~v 72 (75)
T 1iqt_A 1 KIFV---GGLSPDTPEEKIREYFGG-FGE-VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY---HNVGLSKCEI 72 (75)
T ss_dssp CEEE---SCCCSSCCHHHHHHHHHH-HSC-CSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS---CCBTTBCCCE
T ss_pred CEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC---CeECCEEEEE
Confidence 3555 7877 999999999997 999 6677765443678889999999999999999988422 3589998876
Q ss_pred Ee
Q 038714 314 QI 315 (319)
Q Consensus 314 rk 315 (319)
+.
T Consensus 73 ~~ 74 (75)
T 1iqt_A 73 KV 74 (75)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.26 E-value=4.1e-06 Score=67.28 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=58.3
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEEE
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFSI 306 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~I 306 (319)
+..||+|| ++.| +++++++++|.+ ||.+.+...+.+. .+++...||+|.|.+.+.....+ +|. .|
T Consensus 4 ~p~~~lfV---~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~-~tg~~rG~aFV~f~~~~~A~~Ai~~lng~-----~~ 73 (110)
T 3s8s_A 4 IPLKEVTF---ARLNDNVRETFLKDMCRK-YGEVEEVEILLHP-RTRKHLGLARVLFTSTRGAKETVKNLHLT-----SV 73 (110)
T ss_dssp SCCCEEEE---ESCCTTCCHHHHHHHHTT-TSCEEEEEEEECT-TTCCEEEEEEEEESSHHHHHHHHHHHTTC-----EE
T ss_pred CCCcEEEE---ECCCCCCCHHHHHHHHHh-cCCeeEEEEEECC-CCCceeeEEEEEECCHHHHHHHHHHhCCC-----EE
Confidence 44689988 7777 999999999975 9994444444454 77999999999999999877764 564 57
Q ss_pred cCceeEEEec
Q 038714 307 NGKHKIIQIL 316 (319)
Q Consensus 307 ngkhiWarky 316 (319)
+|+.+-+..-
T Consensus 74 ~gr~i~V~~a 83 (110)
T 3s8s_A 74 MGNIIHAQLD 83 (110)
T ss_dssp TTEECEEEEC
T ss_pred CCeEEEEEEC
Confidence 8998877543
No 45
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.25 E-value=2.6e-06 Score=68.57 Aligned_cols=80 Identities=14% Similarity=0.222 Sum_probs=61.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
+++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-.. ..++...||.|.|.+.+..+.++..-+. ..|+|
T Consensus 4 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~-~~g~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~g 75 (116)
T 2fy1_A 4 ADHPGKLFI---GGLNRETNEKMLKAVFGK-HGP-ISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKDMNG--KSLHG 75 (116)
T ss_dssp TCSCCEEEE---ECCTTTCCHHHHHHHHHT-SSC-CSEEEEECS-TTTTCCCEEEEECSSHHHHHHHHHHCSS--CBCSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCC--CEECC
Confidence 456789998 7888 999999999986 999 677777766 4788899999999999988776642111 13788
Q ss_pred ceeEEEeccC
Q 038714 309 KHKIIQILKN 318 (319)
Q Consensus 309 khiWarky~p 318 (319)
+.+-++...|
T Consensus 76 ~~l~V~~a~~ 85 (116)
T 2fy1_A 76 KAIKVEQAKK 85 (116)
T ss_dssp SBCEEEECCC
T ss_pred EEEEEEECCC
Confidence 8887665443
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.25 E-value=4.6e-06 Score=65.53 Aligned_cols=79 Identities=13% Similarity=0.211 Sum_probs=61.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~ 305 (319)
--+..+||| ++.| +|++||+++|.+ ||. |+.|.+-..+.+++..+||+|.|.+.+.....+ +|. .
T Consensus 16 ~~~gt~lfV---~nLp~~~te~~L~~~F~~-~G~-I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-----~ 85 (99)
T 4fxv_A 16 YFQGTNLIV---NYLPQNMTQDELRSLFSS-IGE-VESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL-----R 85 (99)
T ss_dssp CCCCSEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC-----E
T ss_pred cCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC-----E
Confidence 444568888 8888 999999999986 999 556655543367888999999999998876655 553 5
Q ss_pred EcCceeEEEeccCC
Q 038714 306 INGKHKIIQILKNN 319 (319)
Q Consensus 306 IngkhiWarky~pk 319 (319)
|+||.+-++...|.
T Consensus 86 ~~gr~l~V~~AkPS 99 (99)
T 4fxv_A 86 LQSKTIKVSYARPS 99 (99)
T ss_dssp ETTEECEEEECCBC
T ss_pred ECCEEEEEEEeeCC
Confidence 89999987776664
No 47
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.25 E-value=3.9e-06 Score=64.59 Aligned_cols=76 Identities=17% Similarity=0.309 Sum_probs=58.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+....|+|| +|.| ++|++++++|.+ ||. |+.|.|-. ...+||+|.|.+.+..+. |+|. .+.++
T Consensus 7 ~~~~~~~l~V---~~Lp~~~te~~L~~~F~~-~G~-i~~v~i~~-----~srGfaFV~F~~~~~A~~-~~~~---~~~~~ 72 (89)
T 3d2w_A 7 HHHHGSKVFV---GRCTEDMTAEELQQFFCQ-YGE-VVDVFIPK-----PFRAFAFVTFADDKVAQS-LCGE---DLIIK 72 (89)
T ss_dssp ----CCEEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEECCS-----SCCSEEEEEESCHHHHHH-HTTC---EEEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHhc-cCC-EEEEEEee-----CCCCEEEEEECCHHHHHH-HcCC---CcccC
Confidence 3445578988 8888 999999999996 999 66666632 267899999999999885 6665 77899
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+.++...||
T Consensus 73 g~~v~v~~a~~k 84 (89)
T 3d2w_A 73 GISVHISNAEPK 84 (89)
T ss_dssp TEEEEEEECC--
T ss_pred CEEEEEEEcCCC
Confidence 999999887775
No 48
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.24 E-value=3.5e-06 Score=67.02 Aligned_cols=80 Identities=14% Similarity=0.283 Sum_probs=63.5
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+++.+++|| +|.| ++++||+++|.+ ||. |+.|.+-..+.+++...||.|.|.+.+....++ +|.
T Consensus 22 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~----- 91 (108)
T 2jrs_A 22 GSAGPMRLYV---GSLHFNITEDMLRGIFEP-FGR-IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF----- 91 (108)
T ss_dssp SCSSCEEEEE---ECCCSSCCHHHHHHHHTT-TSC-EEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC-----
Confidence 4667799998 6877 999999999975 999 566665543267888999999999999977766 453
Q ss_pred EEcCceeEEEeccCC
Q 038714 305 SINGKHKIIQILKNN 319 (319)
Q Consensus 305 ~IngkhiWarky~pk 319 (319)
.|+|+.+-++...||
T Consensus 92 ~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 92 ELAGRPMKVGHVTER 106 (108)
T ss_dssp CSSSSCCEEECSCSS
T ss_pred EECCEEEEEEEcccC
Confidence 489999988776664
No 49
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.23 E-value=2.5e-06 Score=65.04 Aligned_cols=77 Identities=10% Similarity=0.245 Sum_probs=59.5
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+++.|++|| +|.| ++++||+++|.+ ||. |+.|.|... ..++...||.|.|.+.+....++...+. ..|+
T Consensus 12 ~~~~~~~l~v---~nlp~~~~~~~l~~~F~~-~G~-i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 83 (95)
T 2ywk_A 12 QEEADRTVFV---GNLEARVREEILYELFLQ-AGP-LTKVTICKD-REGKPKSFGFVCFKHPESVSYAIALLNG--IRLY 83 (95)
T ss_dssp CTTGGGEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEEEEEC-TTSCEEEEEEEEESSTHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-EEEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4567799999 6888 999999999986 998 667777665 3478889999999999998777652111 1478
Q ss_pred CceeEEE
Q 038714 308 GKHKIIQ 314 (319)
Q Consensus 308 gkhiWar 314 (319)
|+.+-++
T Consensus 84 g~~l~V~ 90 (95)
T 2ywk_A 84 GRPINVS 90 (95)
T ss_dssp TEECEEE
T ss_pred CCEEEEE
Confidence 9887654
No 50
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.23 E-value=5.4e-06 Score=67.16 Aligned_cols=78 Identities=14% Similarity=0.286 Sum_probs=62.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.|++|| +|.| ++++||+++|.+ ||. |+.|.+-..+..++...||.|.|.+.+....++..-+. ..|+
T Consensus 59 ~~~~~~~l~v---~nlp~~~~~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 131 (140)
T 2ku7_A 59 SATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD-ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SELF 131 (140)
T ss_dssp SCSSCCEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE--EEET
T ss_pred CCCCCcEEEE---EeCCCCCCHHHHHHHHHh-cCC-EEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4567899998 7888 999999999986 999 66677655436788999999999999998888754332 3688
Q ss_pred CceeEEE
Q 038714 308 GKHKIIQ 314 (319)
Q Consensus 308 gkhiWar 314 (319)
|+.+-++
T Consensus 132 g~~l~v~ 138 (140)
T 2ku7_A 132 GRTIRVN 138 (140)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 9988665
No 51
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=3.3e-06 Score=66.35 Aligned_cols=79 Identities=16% Similarity=0.405 Sum_probs=60.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+++|| ++.| ++++||+++|.+ ||. |+.|.+... ++...||+|.|.+.+....++...+. ..|+
T Consensus 18 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 87 (109)
T 1x4a_A 18 AGNNDCRIYV---GNLPPDIRTKDIEDVFYK-YGA-IRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDG--YDYD 87 (109)
T ss_dssp CCCCSSEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 4567799998 6877 999999999997 999 777777443 55788999999999998777642111 2579
Q ss_pred CceeEEEeccC
Q 038714 308 GKHKIIQILKN 318 (319)
Q Consensus 308 gkhiWarky~p 318 (319)
|+.+-++...|
T Consensus 88 g~~l~V~~a~~ 98 (109)
T 1x4a_A 88 GYRLRVEFPRS 98 (109)
T ss_dssp TEECEEECCCC
T ss_pred CeEEEEEEccc
Confidence 99998776544
No 52
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.23 E-value=3.8e-06 Score=64.45 Aligned_cols=81 Identities=11% Similarity=0.216 Sum_probs=60.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCC---CCCCCceEEEEecchhhHHHHhCCCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVAS---STEQPLFARLVMDSASFMDVVLGGKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~---~~~qplfariVf~s~~~v~~vL~g~~~~kf~ 305 (319)
+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.+..... +++...||.|.|.+.+....++..-+. ..
T Consensus 2 s~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g--~~ 74 (98)
T 2cpf_A 2 SSGSSGLFI---KNLNFSTTEETLKGVFSK-VGA-IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG--HT 74 (98)
T ss_dssp CCCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT--CE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC--Ce
Confidence 356789999 6877 999999999985 999 56666654312 347789999999999998877653211 16
Q ss_pred EcCceeEEEeccC
Q 038714 306 INGKHKIIQILKN 318 (319)
Q Consensus 306 IngkhiWarky~p 318 (319)
|+|+.+-++...|
T Consensus 75 ~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 75 VDGHKLEVRISER 87 (98)
T ss_dssp ETTEECEEECSSC
T ss_pred eCCeEEEEEEccC
Confidence 8899988776554
No 53
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=5.7e-06 Score=64.16 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=59.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
...+.+++|| +|.| ++++||+++|.+ ||. |+.|.|... .+....||+|.|.+.+....++..-+. ..|+
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 81 (103)
T 2cqi_A 11 DDGQPRTLYV---GNLSRDVTEVLILQLFSQ-IGP-CKSCKMITE--HTSNDPYCFVEFYEHRDAAAALAAMNG--RKIL 81 (103)
T ss_dssp CSCCCCEEEE---ESCCTTCCHHHHHHHHHH-HSC-EEEEEEECC--CCSSCCEEEEEESSHHHHHHHHHHHTT--EEET
T ss_pred CCCCCCEEEE---eCCCccCCHHHHHHHHHh-cCC-EeEEEEEec--CCCCCCEEEEEECCHHHHHHHHHHhCC--CCcC
Confidence 3556789998 7887 999999999986 998 666666553 223578999999999987777652221 2588
Q ss_pred CceeEEEeccC
Q 038714 308 GKHKIIQILKN 318 (319)
Q Consensus 308 gkhiWarky~p 318 (319)
|+.+-++...|
T Consensus 82 g~~l~V~~a~~ 92 (103)
T 2cqi_A 82 GKEVKVNWATT 92 (103)
T ss_dssp TEEEEEEECCC
T ss_pred CCeEEEEECCC
Confidence 99987766544
No 54
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=2.8e-06 Score=65.91 Aligned_cols=79 Identities=9% Similarity=0.151 Sum_probs=61.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf~ 305 (319)
+...+++|| +|.| ++++||+++|.+.||. |+.|.+-.. ..++...||+|.|.+.+....++. |.. .
T Consensus 6 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~~~G~-v~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~----~ 76 (104)
T 2dhg_A 6 SGPEYSLFV---GDLTPDVDDGMLYEFFVKVYPS-CRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAV----G 76 (104)
T ss_dssp SSCCCCEEE---ECCCTTCCHHHHHHHHHHHCTT-EEEEEEEEC-TTCCEEEEEEEEESCHHHHHHHHHHTTTCC----S
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHHhCCC-eEEEEEEEC-CCCCccceEEEEECCHHHHHHHHHHccCCc----c
Confidence 456689988 7888 9999999999987999 667777665 478889999999999998777765 432 2
Q ss_pred EcCceeEEEeccC
Q 038714 306 INGKHKIIQILKN 318 (319)
Q Consensus 306 IngkhiWarky~p 318 (319)
|+|+.+-++...|
T Consensus 77 ~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 77 LGSKPVRLSVAIP 89 (104)
T ss_dssp SSSSCCCCCBCCC
T ss_pred cCCEeEEEEEccC
Confidence 7888876554433
No 55
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=3.2e-06 Score=64.25 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=61.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.++..+++|| +|.| ++++||+++|.+ ||. |+.|.+...+.+++...||.|.|.+.+....++..-+. ..|+
T Consensus 11 ~~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 83 (95)
T 2cqc_A 11 NPDPNCCLGV---FGLSLYTTERDLREVFSK-YGP-IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--MELD 83 (95)
T ss_dssp SCCGGGCEEE---ESCCSSCCHHHHHHHHHT-TSC-EEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT--EEET
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-eeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4667899999 6877 999999999987 999 66666654436688889999999999997777652111 3678
Q ss_pred CceeEEEe
Q 038714 308 GKHKIIQI 315 (319)
Q Consensus 308 gkhiWark 315 (319)
|+.+-++.
T Consensus 84 g~~l~v~~ 91 (95)
T 2cqc_A 84 GRRIRVSG 91 (95)
T ss_dssp TEEEEEEC
T ss_pred CEEEEEEe
Confidence 99887654
No 56
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=4.3e-06 Score=64.12 Aligned_cols=75 Identities=20% Similarity=0.496 Sum_probs=56.9
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
+...|++|| +|.| ++++||+++|.+ ||. |+.| +.+. ..++ ||+|.|.+.+....++. .+ ...|+|
T Consensus 5 ~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~-v~~v-~~~~-~~g~---~afV~f~~~~~a~~ai~-l~--g~~~~g 71 (94)
T 2e5g_A 5 SSGLRSVFV---SGFPRGVDSAQLSEYFLA-FGP-VASV-VMDK-DKGV---FAIVEMGDVGAREAVLS-QS--QHSLGG 71 (94)
T ss_dssp CTTCCEEEE---ECCCTTCCHHHHHHHGGG-TSC-EEEE-EECS-SSCC---EEEEEESSHHHHHHHHT-CS--CCEETT
T ss_pred cCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-eEEE-EEcC-CCCc---EEEEEECCHHHHHHHHh-cC--CeEECC
Confidence 445689988 7877 999999999996 999 5566 4343 3444 99999999999888887 33 246899
Q ss_pred ceeEEEeccC
Q 038714 309 KHKIIQILKN 318 (319)
Q Consensus 309 khiWarky~p 318 (319)
+.+-++...+
T Consensus 72 ~~l~V~~a~~ 81 (94)
T 2e5g_A 72 HRLRVRPREQ 81 (94)
T ss_dssp EECCCBCSCC
T ss_pred EEEEEEECCc
Confidence 9987765443
No 57
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.20 E-value=3.4e-06 Score=62.57 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=57.2
Q ss_pred eEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeEEEcCce
Q 038714 236 TIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKFSINGKH 310 (319)
Q Consensus 236 t~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf~Ingkh 310 (319)
|+|| +|.| ++++||+++|.+ ||.. +.+.+-..+..++...||.|.|.+.+....++. |. .|+|+.
T Consensus 3 ~l~V---~nlp~~~t~~~l~~~f~~-~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-----~~~g~~ 72 (83)
T 3md1_A 3 NLFV---GDLNVNVDDETLRNAFKD-FPSY-LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ-----DLNGRP 72 (83)
T ss_dssp EEEE---ECCCTTCCHHHHHHHHTT-STTE-EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-----EETTEE
T ss_pred EEEE---eCCCCCCCHHHHHHHHHh-cCCe-eEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC-----eeCCcE
Confidence 5555 7888 999999999986 9984 555544332678889999999999999777754 43 479999
Q ss_pred eEEEeccCC
Q 038714 311 KIIQILKNN 319 (319)
Q Consensus 311 iWarky~pk 319 (319)
+-++...||
T Consensus 73 l~v~~a~~~ 81 (83)
T 3md1_A 73 LRINWAAKL 81 (83)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCcC
Confidence 988776654
No 58
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=6.7e-07 Score=72.33 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=63.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+++|| +|.| ++++||++||.. ||...+.+.|.+. ..++...||+|.|.+.+.....|. .+ ...|+
T Consensus 21 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~--g~~~~ 92 (124)
T 1wel_A 21 PHEAGFCVYL---KGLPFEAENKHVIDFFKK-LDIVEDSIYIAYG-PNGKATGEGFVEFRNEADYKAALC-RH--KQYMG 92 (124)
T ss_dssp CCCCCCEEEE---ECCCTTCCHHHHHHHSCS-SCBCTTTCEEEEC-TTSSEEEEEEEEBSSSHHHHHHHT-SC--SBCST
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCCccceEEEEEC-CCCCCCeEEEEEECCHHHHHHHHH-hC--CCeEC
Confidence 4567789988 8888 999999999986 9986664666665 678899999999999999888887 33 23689
Q ss_pred CceeEEEecc
Q 038714 308 GKHKIIQILK 317 (319)
Q Consensus 308 gkhiWarky~ 317 (319)
|+.+.+....
T Consensus 93 gr~i~V~~a~ 102 (124)
T 1wel_A 93 NRFIQVHPIT 102 (124)
T ss_dssp TSCBEEEEEC
T ss_pred CcEEEEEECC
Confidence 9998776543
No 59
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=3.2e-06 Score=66.39 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=62.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+++|| +|.| ++++||++||.. ||...+.|.|-.. ..++...||+|.|.+++.....|.. + .-.|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~--~~~~~ 82 (104)
T 1wg5_A 11 DTANDGFVRL---RGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-H--KERIG 82 (104)
T ss_dssp SCSCCCEEEE---ESCCTTCCHHHHHHHTTT-CCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-T--TCCSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-C--cchhC
Confidence 3556788887 8988 999999999986 9986665877665 6789999999999999999988875 2 23578
Q ss_pred CceeEEEec
Q 038714 308 GKHKIIQIL 316 (319)
Q Consensus 308 gkhiWarky 316 (319)
|+.+-+.+-
T Consensus 83 gr~i~v~~~ 91 (104)
T 1wg5_A 83 HRYIEIFKS 91 (104)
T ss_dssp SSCCEEEEE
T ss_pred CcEEEEEEC
Confidence 888766543
No 60
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=1.6e-06 Score=68.62 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=60.7
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCc
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGK 309 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ingk 309 (319)
.+.||+|| +|.| ++++||+++|.+ ||. |+.|.+-..+.+++...||+|.|.+.+....+| ..+. ..|+|+
T Consensus 23 ~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g--~~~~g~ 94 (114)
T 2cq4_A 23 RDARTVFC---MQLAARIRPRDLEDFFSA-VGK-VRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTG--QRLLGV 94 (114)
T ss_dssp HHHTEEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTT--EEETTE
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-EeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCC--CEeCCe
Confidence 35689998 7877 999999999976 998 556666543266888999999999999988777 3222 367999
Q ss_pred eeEEEeccC
Q 038714 310 HKIIQILKN 318 (319)
Q Consensus 310 hiWarky~p 318 (319)
.+-++...|
T Consensus 95 ~l~V~~a~~ 103 (114)
T 2cq4_A 95 PIIVQASQA 103 (114)
T ss_dssp EEEEEEHHH
T ss_pred EEEEEecCC
Confidence 998776543
No 61
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.19 E-value=3e-06 Score=66.81 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=61.3
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCc-eeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGEC-FEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKF 304 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc-ie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf 304 (319)
.++-.|+|| ++.| +|+++|+++|.+ ||.. |..|.+-..+.+++..+||+|.|.+.+....++. |. .-.+
T Consensus 6 ~~~m~tlfV---~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~-~~~~ 80 (95)
T 2lkz_A 6 HHHMDTIIL---RNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL-HPPL 80 (95)
T ss_dssp SCCCCEEEE---ESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS-SSCE
T ss_pred CCccCEEEE---eCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC-CCCc
Confidence 344569988 9988 999999999986 9962 5566655433778999999999999988776664 53 2468
Q ss_pred EEcCceeEEE
Q 038714 305 SINGKHKIIQ 314 (319)
Q Consensus 305 ~IngkhiWar 314 (319)
.|+||.+-+.
T Consensus 81 ~i~Gr~i~V~ 90 (95)
T 2lkz_A 81 KIDGKTIGVD 90 (95)
T ss_dssp EETTEEEEEE
T ss_pred eECCEEEEEE
Confidence 9999999554
No 62
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.19 E-value=4.4e-06 Score=68.17 Aligned_cols=82 Identities=18% Similarity=0.332 Sum_probs=62.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+++.|++|| +|.| ++++||+++|.+ ||. |+.|.+-..+.+++...||+|.|.+.+....++..-+. ..|+
T Consensus 38 ~~~~~~~l~V---~nLp~~~~~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 110 (139)
T 1u6f_A 38 EPDVLRNLMV---NYIPTTVDEVQLRQLFER-YGP-IESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG--FNIL 110 (139)
T ss_dssp CTTTTSEEEE---ESCSTTCCHHHHHHHHHH-HSC-EEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT--EECS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4567799999 7877 999999999987 998 66666654336788899999999999998877653221 3578
Q ss_pred CceeEEEeccC
Q 038714 308 GKHKIIQILKN 318 (319)
Q Consensus 308 gkhiWarky~p 318 (319)
|+.+-++...+
T Consensus 111 g~~l~v~~a~~ 121 (139)
T 1u6f_A 111 NKRLKVALAAS 121 (139)
T ss_dssp SCEEEEEESSC
T ss_pred CeEEEEEECCC
Confidence 99887665443
No 63
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=2.2e-06 Score=66.72 Aligned_cols=78 Identities=14% Similarity=0.244 Sum_probs=60.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf~ 305 (319)
..+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-..+.+++...||.|.|.+.+....++. |. .
T Consensus 20 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-----~ 89 (106)
T 1p27_B 20 SVEGWILFV---TGVHEEATEEDIHDKFAE-YGE-IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-----D 89 (106)
T ss_dssp BTTBEEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC-----B
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHhc-cCC-eEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC-----E
Confidence 456789998 6888 999999999986 999 5566665433678889999999999998777664 53 5
Q ss_pred EcCceeEEEeccC
Q 038714 306 INGKHKIIQILKN 318 (319)
Q Consensus 306 IngkhiWarky~p 318 (319)
|+|+.+-++...|
T Consensus 90 ~~g~~l~V~~a~~ 102 (106)
T 1p27_B 90 LMGQPISVDWCFV 102 (106)
T ss_dssp SSSSBCEEEESEE
T ss_pred ECCcEEEEEeecC
Confidence 7899886665444
No 64
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.17 E-value=3.7e-06 Score=63.69 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=59.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+.. ..++...||.|.|.+.+....++ +|.
T Consensus 4 ~~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~-v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~----- 71 (92)
T 2dgv_A 4 GSSGACQIFV---RNLPFDFTWKMLKDKFNE-CGH-VLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGM----- 71 (92)
T ss_dssp SSSSCCEEEE---CSCCTTCCHHHHHHHHHT-TSC-EEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCC-----
Confidence 3567789998 8888 999999999997 998 56666654 35788899999999999877765 453
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
.|+|+.+-++...|
T Consensus 72 ~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 72 KLSGREIDVRIDRN 85 (92)
T ss_dssp CBTTBCCCCEECSC
T ss_pred EECCcEEEEEEcCC
Confidence 37898886665443
No 65
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.17 E-value=4.1e-06 Score=61.23 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCceeEEEe
Q 038714 243 KGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGKHKIIQI 315 (319)
Q Consensus 243 ~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~IngkhiWark 315 (319)
+|.| ++++||+++|.+ ||. |+.+.+...+.+++...||.|.|.+++..+.++. .+ ...|+|+.+-++.
T Consensus 5 ~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~--~~~~~g~~l~v~~ 74 (75)
T 2mss_A 5 GGLSVNTTVEDVKHYFEQ-FGK-VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH--FHEINNKMVECKK 74 (75)
T ss_dssp ECCCSSCCHHHHHHHHHT-TSC-CSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS--CCCSSSCCCEEEC
T ss_pred ecCCCCCCHHHHHHHHHh-cCC-EEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC--CCEECCEEEEEEe
Confidence 7877 999999999996 999 6666665543578899999999999999999887 22 2357898887654
No 66
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.17 E-value=8.6e-06 Score=63.21 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=60.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~ 305 (319)
+++.++||| +|.| ++++||+++|.+ ||. |+.|.|... ..++...||.|.|.+.+....++ +|..
T Consensus 12 ~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~----- 80 (105)
T 2dnh_A 12 GGRDRKLFV---GMLNKQQSEEDVLRLFQP-FGV-IDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHALHGSQ----- 80 (105)
T ss_dssp CCCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEEEEC-SSSCEEEEEEEEESSHHHHHHHHHHHSSCC-----
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEC-CCCCcCcEEEEEeCCHHHHHHHHHHHcCCc-----
Confidence 456799998 6877 999999999996 999 777777765 46788899999999999877765 5543
Q ss_pred EcC---ceeEEEeccC
Q 038714 306 ING---KHKIIQILKN 318 (319)
Q Consensus 306 Ing---khiWarky~p 318 (319)
++| +.+-++...|
T Consensus 81 ~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 81 TMPGASSSLVVKFADT 96 (105)
T ss_dssp CCTTCSSCCEEEESCS
T ss_pred cCCCCCccEEEEECcc
Confidence 555 7776655443
No 67
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.17 E-value=2.5e-06 Score=66.20 Aligned_cols=77 Identities=13% Similarity=0.226 Sum_probs=61.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf 304 (319)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.|... .++...||.|.|.+.+....++. |.
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~----- 78 (103)
T 2d9p_A 11 TRYQVVNLYV---KNLDDGIDDERLRKAFSP-FGT-ITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR----- 78 (103)
T ss_dssp CCSSCCCEEE---ECCCTTCCHHHHHHTTTT-TSC-EEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCC-----
Confidence 4567899999 6877 999999999996 999 677777653 67888999999999998777654 53
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
.|+|+.+-++...|
T Consensus 79 ~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 79 IVATKPLYVALAQR 92 (103)
T ss_dssp BSSSSBCEEEECSS
T ss_pred EeCCcEEEEEEecc
Confidence 36999987776554
No 68
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.16 E-value=8.9e-06 Score=67.59 Aligned_cols=82 Identities=11% Similarity=0.179 Sum_probs=63.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.....+++|| +|.| ++++||+++|.+ ||. |+.|.+...+.+++..+||.|.|.+.+.....|..-+. ..|+
T Consensus 66 ~~~~~~~l~v---~nl~~~~~~~~l~~~F~~-~G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 138 (158)
T 2kn4_A 66 DVEGMTSLKV---DNLTYRTSPDTLRRVFEK-YGR-VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG--AVLD 138 (158)
T ss_dssp CCCBCCEEEE---ESCCTTCCHHHHHHHHHH-HSC-EEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT--EESS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 3456789998 6877 999999999965 998 66666655436789999999999999998887753221 2589
Q ss_pred CceeEEEeccC
Q 038714 308 GKHKIIQILKN 318 (319)
Q Consensus 308 gkhiWarky~p 318 (319)
|+.+-++...|
T Consensus 139 g~~l~v~~a~~ 149 (158)
T 2kn4_A 139 GRELRVQMARY 149 (158)
T ss_dssp SSEEEEEEECC
T ss_pred CeEEEEEECCC
Confidence 99997776544
No 69
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=7.9e-06 Score=62.79 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=58.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+...+|+|| +|.| ++++||+++|.+ ||..+..|.+-..+..++...||.|.|.+.+....++..-+. ..|+
T Consensus 5 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 78 (99)
T 2div_A 5 SSGMAASLWM---GDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING--KPLP 78 (99)
T ss_dssp CCSSSSEEEE---CSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT--SEES
T ss_pred CCCCccEEEE---eCCCCCCCHHHHHHHHHH-hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC--CccC
Confidence 3556799998 8888 999999999997 999652666554436788999999999999998877763221 2578
Q ss_pred Cce
Q 038714 308 GKH 310 (319)
Q Consensus 308 gkh 310 (319)
|+.
T Consensus 79 g~~ 81 (99)
T 2div_A 79 GAT 81 (99)
T ss_dssp SCS
T ss_pred CCC
Confidence 888
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.15 E-value=1.8e-06 Score=71.12 Aligned_cols=83 Identities=12% Similarity=0.225 Sum_probs=62.5
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.++..+++|| +|.| ++++||+++|.+ ||. |+.|.+-..+.+++...||.|.|.+.+....++..-+. ..|+
T Consensus 42 ~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~-I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng--~~i~ 114 (129)
T 2kxn_B 42 NPDPNCCLGV---FGLSLYTTERDLREVFSK-YGP-IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--MELD 114 (129)
T ss_dssp CCCCSSCBCE---ETCTTSCCHHHHHHHHTT-TSC-EEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT--CCSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4667899998 7888 999999999986 999 55566554336788999999999999987777652111 2478
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...||
T Consensus 115 g~~l~V~~a~~~ 126 (129)
T 2kxn_B 115 GRRIRVDFSITK 126 (129)
T ss_dssp SSCCEESCCSSS
T ss_pred CEEEEEEEecCC
Confidence 998877665543
No 71
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=9.9e-06 Score=63.77 Aligned_cols=76 Identities=8% Similarity=0.116 Sum_probs=58.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf 304 (319)
..+..+|+|| +|.| ++++||+++|.+ ||. |+.|.+-.. ..++...||+|.|.+.+....++. |.
T Consensus 11 ~~~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~-i~~~~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~----- 79 (114)
T 2do0_A 11 AGRLGSTVFV---ANLDYKVGWKKLKEVFSM-AGV-VVRADILED-KDGKSRGIGTVTFEQSIEAVQAISMFNGQ----- 79 (114)
T ss_dssp CCCCCSCEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEEEEC-TTCSEEEEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEC-CCCCeeeEEEEEECCHHHHHHHHHHhCCC-----
Confidence 3456789999 6877 999999999996 998 566666554 357888999999999988777654 42
Q ss_pred EEcCceeEEEec
Q 038714 305 SINGKHKIIQIL 316 (319)
Q Consensus 305 ~IngkhiWarky 316 (319)
.|+|+.+-++..
T Consensus 80 ~~~g~~l~v~~a 91 (114)
T 2do0_A 80 LLFDRPMHVKMD 91 (114)
T ss_dssp EETTEECEEEEC
T ss_pred EeCCCEEEEEEc
Confidence 578998866643
No 72
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.15 E-value=3.1e-06 Score=72.18 Aligned_cols=81 Identities=10% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcC--CceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFG--ECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSI 306 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG--dcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~I 306 (319)
..+.+++|| +|.| ++++||+++|.+ || ++++.-.+.+. .+++..+||+|.|.+.+....++..-+. ..|
T Consensus 52 ~~~~~~lfV---gnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~-~tg~skGfaFV~f~~~~~A~~Ai~~lng--~~~ 124 (156)
T 3n9u_C 52 RNRRAAVYV---GSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENR-ANGQSKGYAEVVVASENSVHKLLELLPG--KVL 124 (156)
T ss_dssp ----CEEEE---ECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECT-TTCCEEEEEEEEESCHHHHHHHHHHSTT--CEE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 457789998 7888 999999999975 99 74444444454 7899999999999999998877653211 268
Q ss_pred cCceeEEEeccC
Q 038714 307 NGKHKIIQILKN 318 (319)
Q Consensus 307 ngkhiWarky~p 318 (319)
+|+.+-++...|
T Consensus 125 ~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 125 NGEKVDVRPATR 136 (156)
T ss_dssp TTEECEEEECCH
T ss_pred CCeEeEEEEcCC
Confidence 999998876544
No 73
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.14 E-value=4.2e-06 Score=68.75 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=65.1
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCce
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGKH 310 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ingkh 310 (319)
..+++|| +|.| ++++||+++|.+ ||+ |+.+.+...+..++..+||.|.|.+.+....++.- -...|+|+.
T Consensus 86 ~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~~g~~ 157 (167)
T 2cjk_A 86 KTGKIFV---GGIGPDVRPKEFEEFFSQ-WGT-IIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN---KFIDFKDRK 157 (167)
T ss_dssp HCEEEEE---EEECTTCCHHHHHHHHHT-TSC-CSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHC---SEECSSSSC
T ss_pred CCCeEEE---CCCCCCCCHHHHHHHHHh-Ccc-EEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhC---CCEEeCCeE
Confidence 3568888 7776 999999999996 998 66666655436788999999999999999888872 356789999
Q ss_pred eEEEeccCC
Q 038714 311 KIIQILKNN 319 (319)
Q Consensus 311 iWarky~pk 319 (319)
+.++...||
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999988886
No 74
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.14 E-value=8e-06 Score=64.54 Aligned_cols=76 Identities=17% Similarity=0.338 Sum_probs=58.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.|+..||+|| +|.| ++++||+++|.+ ||. |+.|.+-.. +....||.|.|.+.+.....+ +|.
T Consensus 4 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~----- 70 (115)
T 3lqv_A 4 PPEVNRILYI---RNLPYKITAEEMYDIFGK-YGP-IRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGF----- 70 (115)
T ss_dssp CTTCCSEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCC-----
Confidence 4667789998 7888 899999999996 999 666766543 445899999999998877664 464
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
.|+|+.+-+..+.|
T Consensus 71 ~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 71 NVSNRYLVVLYYNA 84 (115)
T ss_dssp BSSSCBCEEEECCH
T ss_pred EECCeEEEEEEecC
Confidence 36899887766544
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=3.5e-06 Score=65.21 Aligned_cols=81 Identities=10% Similarity=0.160 Sum_probs=60.6
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
.++.||+|| +|.| ++++||+++|.+ ||. |+.|.+-..+..++...||.|.|.+.+....++...+. ..++|
T Consensus 5 ~~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g 77 (104)
T 1p1t_A 5 DRSLRSVFV---GNIPYEATEEQLKDIFSE-VGP-VVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG--REFSG 77 (104)
T ss_dssp HHHHSCEEE---ESCCTTSCHHHHHHHHHT-TSC-CSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS--BSCSS
T ss_pred CCCccEEEE---eCCCCcCCHHHHHHHHHh-cCC-eeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC--CeeCC
Confidence 446689999 7887 999999999996 999 55555544326788899999999999987776642221 13689
Q ss_pred ceeEEEeccC
Q 038714 309 KHKIIQILKN 318 (319)
Q Consensus 309 khiWarky~p 318 (319)
+.+-++...|
T Consensus 78 ~~l~v~~a~~ 87 (104)
T 1p1t_A 78 RALRVDNAAS 87 (104)
T ss_dssp SCBEEEETTC
T ss_pred cEEEEEeCCC
Confidence 9887766544
No 76
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=9.3e-06 Score=61.59 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=63.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+++|| +|.| ++++||+++|.+ | . |+.|.+-.. ..++...||.|.|.+.+.....|. .+. ..|+
T Consensus 6 ~~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~-~-i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g--~~~~ 75 (91)
T 2dgw_A 6 SGTTCHTVKL---RGAPFNVTEKNVMEFLAP-L-K-PVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNR--EYMG 75 (91)
T ss_dssp CCCCCCEEEE---ECCCSSCCHHHHHHHHTT-S-C-CSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCS--EEET
T ss_pred CCCCccEEEE---ECCCCCCCHHHHHHHHhh-C-C-ceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCC--ceeC
Confidence 4567789988 7888 999999999997 6 5 666766655 678889999999999999888876 432 4689
Q ss_pred CceeEEEeccC
Q 038714 308 GKHKIIQILKN 318 (319)
Q Consensus 308 gkhiWarky~p 318 (319)
|+.+-++...|
T Consensus 76 gr~i~v~~a~~ 86 (91)
T 2dgw_A 76 GRYIEVFREKS 86 (91)
T ss_dssp TEEEEEEEESS
T ss_pred CcEEEEEECCc
Confidence 99998776654
No 77
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.12 E-value=4.3e-06 Score=64.17 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=61.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.++..+++|| +|.| ++++||+++|.+ ||.+.+...+.+. ..++...||.|.|.+.+....++...+. ..|+
T Consensus 11 ~~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~ 83 (98)
T 2cqp_A 11 GKPGPTIIKV---QNMPFTVSIDEILDFFYG-YQVIPGSVCLKYN-EKGMPTGEAMVAFESRDEATAAVIDLND--RPIG 83 (98)
T ss_dssp CCCSSEEEEE---ESCCTTCCHHHHHHHTTT-SCCCTTTCEEEEC-SSSCEEEEEEEEESCHHHHHHHHHHTTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCCccceEEEEEC-CCCCeeeEEEEEECCHHHHHHHHHHhCC--CeeC
Confidence 4556688988 7888 999999999986 9986655556555 6788899999999999998877742221 1689
Q ss_pred CceeEEEec
Q 038714 308 GKHKIIQIL 316 (319)
Q Consensus 308 gkhiWarky 316 (319)
|+.+-++.-
T Consensus 84 g~~l~V~~a 92 (98)
T 2cqp_A 84 SRKVKLVLG 92 (98)
T ss_dssp TEECEEEES
T ss_pred CeEEEEEEc
Confidence 998877654
No 78
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.12 E-value=7.3e-06 Score=65.90 Aligned_cols=80 Identities=13% Similarity=0.186 Sum_probs=62.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.++..+++|| +|.| ++++||+++|.+ ||. |+.|.+... ..++...||.|.|.+.+....++..-+. ..|+
T Consensus 31 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~v~i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~ 102 (124)
T 2kt5_A 31 GVETGAKLLV---SNLDFGVSDADIQELFAE-FGT-LKKAAVDYD-RSGRSLGTADVHFERRADALKAMKQYKG--VPLD 102 (124)
T ss_dssp CCSSCEEEEE---ESCCSSCCHHHHHHHHHT-TSC-CSEEEEECC-SSSSCCSEEEEEESSHHHHHHHHHHHTT--EESS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eeEEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 4566788988 7887 999999999987 998 677777766 4788899999999999987777652221 2679
Q ss_pred CceeEEEecc
Q 038714 308 GKHKIIQILK 317 (319)
Q Consensus 308 gkhiWarky~ 317 (319)
|+.+-++.-.
T Consensus 103 g~~l~V~~a~ 112 (124)
T 2kt5_A 103 GRPMDIQLVA 112 (124)
T ss_dssp SCEEEEEEEC
T ss_pred CcEEEEEEeC
Confidence 9998766543
No 79
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=4.9e-06 Score=66.01 Aligned_cols=81 Identities=10% Similarity=0.194 Sum_probs=61.2
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
...+.+++|| +|.| ++++||+++|.+ ||. |+.|.+-.. . +....||.|.|.+.+....++...+. ..|+
T Consensus 25 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~-~-~~~kg~afV~f~~~~~A~~Ai~~l~g--~~~~ 95 (109)
T 2err_A 25 NKSQPKRLHV---SNIPFRFRDPDLRQMFGQ-FGK-ILDVEIIFN-E-RGSKGFGFVTFENSADADRAREKLHG--TVVE 95 (109)
T ss_dssp CTTCCCEEEE---ESCCTTCCHHHHHHHGGG-TCC-CSCEEECCB-T-TBCTTEEEEECCCSHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---ECCCCcCCHHHHHHHHHh-cCC-EEEEEEEEC-C-CCCceEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 4567799998 7887 999999999986 999 556666543 2 34789999999999987777542111 1489
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...||
T Consensus 96 g~~l~V~~a~~~ 107 (109)
T 2err_A 96 GRKIEVNNATAR 107 (109)
T ss_dssp TEECEEEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999988877664
No 80
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=1e-05 Score=63.79 Aligned_cols=82 Identities=12% Similarity=0.200 Sum_probs=61.5
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCcee-------EEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCe
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFE-------AINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSK 301 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie-------~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~ 301 (319)
..+.+|+|| +|.| ++++||+++|.+ ||.... .|.+...+..++...||.|.|.+.+....++..-+.
T Consensus 12 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 12 DSDNSAIYV---QGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCEEEE---ECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEE---cCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 456789998 6887 999999999997 999552 455544336788899999999999987777642111
Q ss_pred eeEEEcCceeEEEeccC
Q 038714 302 AKFSINGKHKIIQILKN 318 (319)
Q Consensus 302 ~kf~IngkhiWarky~p 318 (319)
..|+|+.+-++...|
T Consensus 88 --~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 88 --KDFQGSKLKVSLARK 102 (113)
T ss_dssp --CEETTEECEEECSSC
T ss_pred --CccCCCEEEEEECCC
Confidence 147899987776554
No 81
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.11 E-value=2.2e-06 Score=64.88 Aligned_cols=75 Identities=12% Similarity=0.265 Sum_probs=55.4
Q ss_pred ceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCceeE
Q 038714 235 RTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGKHKI 312 (319)
Q Consensus 235 Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~IngkhiW 312 (319)
||+|| +|.| ++++||+++|.+ ||. |+.|.+...+.+++...||.|.|.+.+ ....+..-+.. .|+|+.+-
T Consensus 2 ~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~--~~~g~~l~ 73 (90)
T 2ki2_A 2 RNIYV---GNLVYSATSEQVKELFSQ-FGK-VFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT--DFMGRTIR 73 (90)
T ss_dssp EEEEE---EEECTTSSHHHHTTTHHH-HTC-CSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS--CCSSSSCS
T ss_pred cEEEE---CCCCCCCCHHHHHHHHHh-cCC-EEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC--EECCeEEE
Confidence 67887 6777 999999999997 999 556666544367889999999999999 66655432211 37898886
Q ss_pred EEecc
Q 038714 313 IQILK 317 (319)
Q Consensus 313 arky~ 317 (319)
++...
T Consensus 74 V~~a~ 78 (90)
T 2ki2_A 74 VTEAN 78 (90)
T ss_dssp EEEC-
T ss_pred EEEcC
Confidence 65543
No 82
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.11 E-value=1.2e-05 Score=64.42 Aligned_cols=76 Identities=12% Similarity=0.196 Sum_probs=58.8
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCc
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGK 309 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ingk 309 (319)
.+.||+|| +|.| ++++||+++|.+ ||+ |+.|.|...+..++...||.|.|.+.+.....+. .+. ..|+|+
T Consensus 34 ~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g--~~~~g~ 105 (124)
T 2jwn_A 34 IDKRSVYV---GNVDYGSTAQDLEAHFSS-CGS-INRITILCDKFSGHPKGYAYIEFAERNSVDAAVA-MDE--TVFRGR 105 (124)
T ss_dssp HHHTEEEE---EEECTTCCHHHHHHHHHT-TSC-EEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT-TTT--CEETTE
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh-cCC--CeECCe
Confidence 45689998 6777 999999999996 998 5555554432678999999999999999888883 222 257999
Q ss_pred eeEEEe
Q 038714 310 HKIIQI 315 (319)
Q Consensus 310 hiWark 315 (319)
.+-++.
T Consensus 106 ~l~V~~ 111 (124)
T 2jwn_A 106 TIKVLP 111 (124)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 986554
No 83
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.09 E-value=1.1e-05 Score=64.50 Aligned_cols=75 Identities=15% Similarity=0.268 Sum_probs=57.2
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeEEEc
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKFSIN 307 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf~In 307 (319)
...+||| +|.| ++++||+++|.+ ||. |++|.+-.. .+....||+|.|.+.+.....+. |. .|+
T Consensus 4 ~~~~lfV---~nLp~~~te~~L~~~F~~-~G~-v~~v~i~~d--~~~~kg~afV~f~~~~~A~~Ai~~l~~~-----~~~ 71 (115)
T 4f25_A 4 GSGNIFI---KNLDKSIDNKALYDTFSA-FGN-ILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGM-----LLN 71 (115)
T ss_dssp -CCEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEEE--TTEEEEEEEEEESCHHHHHHHHHHHTTC-----EET
T ss_pred CCCEEEE---CCCCCCCCHHHHHHHHhc-cCC-EEEEEEeec--CCCCCceEEEEECCHHHHHHHHHHcCCC-----EEC
Confidence 3457888 8988 999999999986 998 556655443 24467899999999999877764 43 689
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
||.+-+..+.|+
T Consensus 72 g~~i~V~~a~~~ 83 (115)
T 4f25_A 72 DRKVFVGRFKSR 83 (115)
T ss_dssp TEECEEEESSCC
T ss_pred CEEEEEEECCCc
Confidence 999988776653
No 84
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.09 E-value=5e-06 Score=67.07 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=61.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCC--ceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGE--CFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFS 305 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGd--cie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~ 305 (319)
.+.+.+|+|| +|.| ++++||++||.. ||. .|+.|.|-.. ..++...||+|.|.+++.....|. .+. ..
T Consensus 13 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~g--~~ 84 (118)
T 2db1_A 13 EGGEGYVVKL---RGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYT-REGRQSGEAFVELESEDDVKLALK-KDR--ES 84 (118)
T ss_dssp CBCCCCEEEE---ESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEEC-SSSCEEEEEEEEBSSHHHHHHHGG-GTT--EE
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHH-cCCccCceeEEEEEC-CCCCCCeEEEEEECCHHHHHHHHh-cCC--Ce
Confidence 3566788988 7988 999999999997 996 2666666554 348889999999999999998887 432 46
Q ss_pred EcCceeEEEe
Q 038714 306 INGKHKIIQI 315 (319)
Q Consensus 306 IngkhiWark 315 (319)
|+|+.+-+..
T Consensus 85 ~~gr~i~V~~ 94 (118)
T 2db1_A 85 MGHRYIEVFK 94 (118)
T ss_dssp ETTEEEEEEE
T ss_pred ECCeEEEEEE
Confidence 8999876654
No 85
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.08 E-value=1e-05 Score=62.86 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=60.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.|-..+.+++...||+|.|.+.+....++ +|... +
T Consensus 9 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~ 81 (106)
T 2dgp_A 9 KDHDAIKLFI---GQIPRNLDEKDLKPLFEE-FGK-IYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT--L 81 (106)
T ss_dssp CCTTCEEEEE---ESCCTTCCHHHHHHHHHH-HSC-CCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC--C
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc--c
Confidence 4667899998 6888 999999999997 998 666666554367889999999999988866664 45431 0
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
..+|+.+-++...|
T Consensus 82 ~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 82 PGMNRPIQVKPADS 95 (106)
T ss_dssp TTCSSCCEEEECCC
T ss_pred CCCCceEEEEECCc
Confidence 11667776665443
No 86
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.08 E-value=1.2e-05 Score=67.11 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=60.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
..++.+|||| +|.| ++++||+++|.+ ||. |+.|.|-..+.+++...||+|.|.+.+....++..-+. ..|+
T Consensus 35 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~ 107 (156)
T 1h2v_Z 35 LLKKSCTLYV---GNLSFYTTEEQIYELFSK-SGD-IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING--TRLD 107 (156)
T ss_dssp TTTTCCEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--SEET
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4567799999 6877 999999999986 999 66777755436788889999999999998777653221 2468
Q ss_pred CceeEEEe
Q 038714 308 GKHKIIQI 315 (319)
Q Consensus 308 gkhiWark 315 (319)
|+.+-++.
T Consensus 108 g~~l~V~~ 115 (156)
T 1h2v_Z 108 DRIIRTDW 115 (156)
T ss_dssp TEECEEEE
T ss_pred CeEEEEEE
Confidence 98885443
No 87
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=3.8e-06 Score=64.00 Aligned_cols=75 Identities=9% Similarity=0.170 Sum_probs=58.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+++.+++|| +|.| ++++||+++|.+ ||+.|+.+.+.. ..||.|.|.+.+..+..+ +|. .
T Consensus 4 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~----~ 68 (93)
T 2cqh_A 4 GSSGMNKLYI---GNLSPAVTADDLRQLFGD-RKLPLAGQVLLK-------SGYAFVDYPDQNWAIRAIETLSGK----V 68 (93)
T ss_dssp CCCCCCCEEE---ECCCTTCCHHHHHHHHHH-TTCCCSSCEEEE-------TTEEEECCSCHHHHHHHHHHHTTT----C
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHH-cCCceEEEEEcC-------CCEEEEEECCHHHHHHHHHHccCC----e
Confidence 3567799998 7877 999999999986 999777777732 469999999988866655 452 3
Q ss_pred EEcCceeEEEeccCC
Q 038714 305 SINGKHKIIQILKNN 319 (319)
Q Consensus 305 ~IngkhiWarky~pk 319 (319)
.|+|+.+-++...|+
T Consensus 69 ~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 69 ELHGKIMEVDYSVSK 83 (93)
T ss_dssp EETTEECEEEECCCC
T ss_pred eECCEEEEEEEccCc
Confidence 689999987766553
No 88
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=8.1e-06 Score=61.03 Aligned_cols=62 Identities=8% Similarity=0.203 Sum_probs=50.6
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG 297 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~ 297 (319)
+...+++|| +|.| ++++||+++|.+ ||. |+.+.|...+.+++...||.|.|.+.+....++.
T Consensus 2 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 2 SSGSSGLYI---RGLQPGTTDQDLVKLCQP-YGK-IVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CCCCCEEEE---ESCCTTCCHHHHHTTSTT-TSC-EEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 456689998 7888 999999999995 999 6666665443678889999999999998777664
No 89
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.07 E-value=1.9e-05 Score=61.41 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=59.2
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
..+..+++|| +|.| ++++||+++|.. ||. |+.|.+-.. ..++...||.|.|.+.+....++..-+. ..|+
T Consensus 25 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 96 (107)
T 3ulh_A 25 GVETGGKLLV---SNLDFGVSDADIQELFAE-FGT-LKKAAVHYD-RSGRSLGTADVHFERKADALKAMKQYNG--VPLD 96 (107)
T ss_dssp CCCCSEEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEC-CCCCcceEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence 4567789988 6877 999999999996 999 567777665 4778889999999999987776542111 1578
Q ss_pred CceeEEE
Q 038714 308 GKHKIIQ 314 (319)
Q Consensus 308 gkhiWar 314 (319)
|+.+-++
T Consensus 97 g~~l~V~ 103 (107)
T 3ulh_A 97 GRPMNIQ 103 (107)
T ss_dssp TEECEEE
T ss_pred CcEEEEE
Confidence 9988665
No 90
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.07 E-value=1.4e-06 Score=67.50 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=61.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
+.+.+++|| +|.| ++++||+++|.+ ||.... ..|.+. ..++...||+|.|.+.+.....|. .+ ...|+|
T Consensus 14 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~~-~~g~~~g~afV~f~~~~~a~~A~~-l~--g~~~~g 84 (101)
T 1fj7_A 14 STTPFNLFI---GNLNPNKSVAELKVAISE-LFAKND-LAVVDV-RTGTNRKFGYVDFESAEDLEKALE-LT--GLKVFG 84 (101)
T ss_dssp CSCSEEEEE---ECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEE-EEETTTTEEEEEESSHHHHHHHHH-GG--GCCBTT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCcce-EEEecC-CCCCcCcEEEEEECCHHHHHHHHh-cC--CcEECC
Confidence 456789988 7887 999999999997 998666 555554 568889999999999988776664 22 234789
Q ss_pred ceeEEEeccCC
Q 038714 309 KHKIIQILKNN 319 (319)
Q Consensus 309 khiWarky~pk 319 (319)
+.+-++...|+
T Consensus 85 ~~l~V~~a~~~ 95 (101)
T 1fj7_A 85 NEIKLEKPKGR 95 (101)
T ss_dssp BCCEEECCSCC
T ss_pred cEEEEEEcCCC
Confidence 99887765543
No 91
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.07 E-value=1.5e-05 Score=61.46 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=58.4
Q ss_pred CCCCCceEEEEccCCCcCCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCc
Q 038714 230 VPPDERTIFLTFSKGYPISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGK 309 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~Pvse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ingk 309 (319)
.+.+.+|+|| +|+.++++||+++|.+ ||. |+.|.|. +...||+|.|.+.+.....+...+. ..|+|+
T Consensus 11 ~~~~~~~l~V---~n~~~t~~~l~~~F~~-~G~-i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~ 77 (97)
T 1x5p_A 11 APRKGNTLYV---YGEDMTPTLLRGAFSP-FGN-IIDLSMD------PPRNCAFVTYEKMESADQAVAELNG--TQVESV 77 (97)
T ss_dssp CCCCCSEEEE---ECSSCCHHHHHHHHTT-TSC-EEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTT--EEETTE
T ss_pred CCCCCCEEEE---cCCCCCHHHHHHHHhh-CCC-EEEEEec------CCCCEEEEEECCHHHHHHHHHHhCC--CeECCe
Confidence 4567789999 4689999999999986 998 7777773 4456999999999998887743221 257999
Q ss_pred eeEEEeccC
Q 038714 310 HKIIQILKN 318 (319)
Q Consensus 310 hiWarky~p 318 (319)
.+-++...|
T Consensus 78 ~l~v~~a~~ 86 (97)
T 1x5p_A 78 QLKVNIARK 86 (97)
T ss_dssp EEEEECCSS
T ss_pred EEEEEECCC
Confidence 987765544
No 92
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.4e-05 Score=64.98 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=55.5
Q ss_pred ceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEEEcCc
Q 038714 235 RTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFSINGK 309 (319)
Q Consensus 235 Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~Ingk 309 (319)
||+|| +|.| ++++||+++|.+ ||+ |+.|.+-.. ..++...||.|.|.+.+.....+ +|. .++|+
T Consensus 1 R~l~V---~nlp~~~t~~~l~~~f~~-~G~-i~~v~i~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~-----~~~g~ 69 (166)
T 3md3_A 1 RVLYV---GNLDKAITEDILKQYFQV-GGP-IANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTLNGK-----QIENN 69 (166)
T ss_dssp CEEEE---EEEETTCCHHHHHHHHGG-GSC-EEEEEEECC-CC-CCEEEEEEEESSHHHHHHHHHHHTTC-----EETTE
T ss_pred CEEEE---CCCCCcCCHHHHHHHHHh-cCC-eEEEEEEEC-CCCCCCCEEEEEeCCHHHHHHHHHHcCCC-----ccCCC
Confidence 78888 7888 999999999996 998 666666554 45778899999999999987777 453 46888
Q ss_pred eeEEEec
Q 038714 310 HKIIQIL 316 (319)
Q Consensus 310 hiWarky 316 (319)
.+-++..
T Consensus 70 ~i~v~~~ 76 (166)
T 3md3_A 70 IVKINWA 76 (166)
T ss_dssp ECEEEEC
T ss_pred eeEEEEc
Confidence 8766544
No 93
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.05 E-value=5.7e-06 Score=68.36 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=61.8
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCc---eeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGEC---FEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc---ie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~ 305 (319)
.++.+++|| +|.| ++++||++||.. ||.. |+.|.|-.. ..++...||+|.|.+++.....|.- +. -.
T Consensus 20 ~~~~~~v~V---~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~--~~ 91 (123)
T 2dha_A 20 KENQVIVRM---RGLPFTATAEEVVAFFGQ-HCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HK--DL 91 (123)
T ss_dssp CCSCCEEEE---CSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TT--EE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-hCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CC--Ce
Confidence 456678888 8988 999999999996 9975 577777665 5788999999999999999988874 22 36
Q ss_pred EcCceeEEEe
Q 038714 306 INGKHKIIQI 315 (319)
Q Consensus 306 IngkhiWark 315 (319)
|+||.|-+.+
T Consensus 92 l~gR~i~V~~ 101 (123)
T 2dha_A 92 LGKRYIELFR 101 (123)
T ss_dssp SSSCEECCEE
T ss_pred eCCeEEEEEE
Confidence 7888765544
No 94
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.03 E-value=2.7e-06 Score=64.90 Aligned_cols=73 Identities=8% Similarity=0.250 Sum_probs=54.1
Q ss_pred eEEEEccCCCc--CCHHHHHHHHHhhcC--CceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEEEcC
Q 038714 236 TIFLTFSKGYP--ISENEIRDFFIRKFG--ECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFSING 308 (319)
Q Consensus 236 t~FvTFS~G~P--vse~ei~~fF~~~yG--dcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~Ing 308 (319)
|+|| +|.| ++++||+++|.+ || ++.+.-.+.+. .+++..+||+|.|.+.+.....+ +|. .++|
T Consensus 3 ~l~V---~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~-~~g~~kG~afV~f~~~~~a~~Ai~~l~g~-----~~~g 72 (90)
T 3p5t_L 3 ALYI---GNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENR-ANGQSKGFALVGVGSEASSKKLMDLLPKR-----ELHG 72 (90)
T ss_dssp -CEE---ESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECT-TTCCEEEEEEECC-CHHHHHHHHHHGGGS-----CSSS
T ss_pred EEEE---eCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecC-CCCccCcEEEEEECCHHHHHHHHHHcCCC-----eeCC
Confidence 5666 6877 999999999986 99 74444445454 68899999999999999877665 454 4899
Q ss_pred ceeEEEeccC
Q 038714 309 KHKIIQILKN 318 (319)
Q Consensus 309 khiWarky~p 318 (319)
|.+-++...|
T Consensus 73 r~i~V~~~~~ 82 (90)
T 3p5t_L 73 QNPVVTPSNK 82 (90)
T ss_dssp CCCEECCC--
T ss_pred EEEEEEECCC
Confidence 9998877665
No 95
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.03 E-value=5.5e-06 Score=66.53 Aligned_cols=78 Identities=14% Similarity=0.250 Sum_probs=60.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
...+.+|+|| +|.| ++++||+++|.. ||. |+.|.|-.....+....||.|.|.+.+....++ +|.
T Consensus 18 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~----- 87 (126)
T 3ex7_B 18 RSVEGWILFV---TGVHEEATEEDIHDKFAE-YGE-IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ----- 87 (126)
T ss_dssp CCSSSEEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-----
Confidence 3456789988 7877 999999999986 998 566666443267888999999999999877765 553
Q ss_pred EEcCceeEEEecc
Q 038714 305 SINGKHKIIQILK 317 (319)
Q Consensus 305 ~IngkhiWarky~ 317 (319)
.|+|+.+-+....
T Consensus 88 ~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 88 DLMGQPISVDWCF 100 (126)
T ss_dssp BSSSSBCEEEESE
T ss_pred eeCCeEEEEEEec
Confidence 3789988766543
No 96
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=9.3e-06 Score=62.73 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=60.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+++|| +|.| ++++||+++|.+ ||++ .+-.. ..++...||.|.|.+.+....++...+. ..|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~v----~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 79 (101)
T 2fc9_A 11 WSGESKTLVL---SNLSYSATEETLQEVFEK-ATFI----KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK--REIE 79 (101)
T ss_dssp CSCCCSEEEE---ESCCTTCCHHHHHHHCSS-CSEE----ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSS--EEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCEE----EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence 4567899999 6887 999999999997 9975 23233 4678889999999999998877653221 4688
Q ss_pred CceeEEEeccC
Q 038714 308 GKHKIIQILKN 318 (319)
Q Consensus 308 gkhiWarky~p 318 (319)
|+.+-++...|
T Consensus 80 g~~l~v~~a~~ 90 (101)
T 2fc9_A 80 GRAIRLELQGP 90 (101)
T ss_dssp TEEEEEEECSS
T ss_pred CeEEEEEEcCC
Confidence 99998776654
No 97
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.03 E-value=1.4e-05 Score=67.29 Aligned_cols=80 Identities=23% Similarity=0.383 Sum_probs=63.2
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCc
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGK 309 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ingk 309 (319)
...+++|| +|.| ++++||+++|.+ ||. |+.|.+...+..++...||.|.|.+.+....+|... ...|+|+
T Consensus 102 ~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~---~~~~~G~ 173 (196)
T 1l3k_A 102 LTVKKIFV---GGIKEDTEEHHLRDYFEQ-YGK-IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK---YHTVNGH 173 (196)
T ss_dssp -CCSEEEE---ECCTTTCCHHHHHHHHTT-TSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCS---CCEETTE
T ss_pred CCcceEEE---eCCCCCCCHHHHHHHHhc-CCC-eEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhC---CcEECCE
Confidence 45589988 7877 999999999985 999 666665544267888999999999999988888642 3489999
Q ss_pred eeEEEeccCC
Q 038714 310 HKIIQILKNN 319 (319)
Q Consensus 310 hiWarky~pk 319 (319)
.+-++...||
T Consensus 174 ~i~v~~a~~k 183 (196)
T 1l3k_A 174 NCEVRKALSK 183 (196)
T ss_dssp ECEEEECC--
T ss_pred EEEEEecCCh
Confidence 9999888775
No 98
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.01 E-value=5.8e-06 Score=68.43 Aligned_cols=81 Identities=12% Similarity=0.212 Sum_probs=62.5
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
+++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-..+.+++...||.|.|.+.+....++..-+.. .|+|
T Consensus 44 ~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~-i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~--~i~g 116 (135)
T 2lea_A 44 VEGMTSLKV---DNLTYRTSPDTLRRVFEK-YGR-VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA--VLDG 116 (135)
T ss_dssp GGGCCCEEE---ECCCSSCHHHHHHHHHGG-GSC-CSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC--CSSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC--EECC
Confidence 456789998 6887 999999999986 998 566666543367889999999999999988888643222 3789
Q ss_pred ceeEEEeccC
Q 038714 309 KHKIIQILKN 318 (319)
Q Consensus 309 khiWarky~p 318 (319)
+.+-++...|
T Consensus 117 ~~l~V~~a~~ 126 (135)
T 2lea_A 117 RELRVQMARY 126 (135)
T ss_dssp SCCEEEECCC
T ss_pred EEEEEEECCC
Confidence 9887665443
No 99
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.01 E-value=3.6e-06 Score=66.41 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=61.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCc--eeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGEC--FEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFS 305 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc--ie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~ 305 (319)
.+.+.+++|| +|.| ++++||++||.. ||.. |+.|.+-.. ..++..+||+|.|.+.+.....|. .+. ..
T Consensus 7 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~-~~g~~~G~afV~F~~~~~a~~Al~-~~~--~~ 78 (107)
T 2lmi_A 7 EVDDVFLIRA---QGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLN-RDGKRRGDALIEMESEQDVQKALE-KHR--MY 78 (107)
T ss_dssp CCSSCCEEEE---ECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCC-TTSTTCSEEEEEBSSHHHHHHHHT-TTT--CC
T ss_pred CCCCccEEEE---eCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHH-hCc--ce
Confidence 3556778888 7988 999999999996 8864 667776654 338999999999999999888887 332 24
Q ss_pred EcCceeEEEecc
Q 038714 306 INGKHKIIQILK 317 (319)
Q Consensus 306 IngkhiWarky~ 317 (319)
|+|+.+-+....
T Consensus 79 ~~gr~i~V~~a~ 90 (107)
T 2lmi_A 79 MGQRYVEVYEIN 90 (107)
T ss_dssp SSSSCCCCEECC
T ss_pred eCCeEEEEEECC
Confidence 788887665543
No 100
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.00 E-value=1e-05 Score=67.89 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=62.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCc--eeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGEC--FEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFS 305 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc--ie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~ 305 (319)
.+.+.+++|| +|.| +|++||++||.. ||.. |+.|.+-.. ..++...||.|.|.+.+..+..|. .+. ..
T Consensus 40 ~~~~~~~lfV---gnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d-~~g~srG~aFV~F~~~e~a~~Al~-~~g--~~ 111 (136)
T 2hgl_A 40 EGGEGFVVKL---RGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYT-REGRQSGEAFVELGSEDDVKMALK-KDR--ES 111 (136)
T ss_dssp SCCTTCEEEE---ESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEEC-SSSCEEEEEEEECSSHHHHHHHHT-TTE--EE
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEEC-CCCCCCeEEEEEECCHHHHHHHHh-cCC--CE
Confidence 3556788888 8988 999999999997 9985 666666654 338999999999999999998887 443 46
Q ss_pred EcCceeEEEec
Q 038714 306 INGKHKIIQIL 316 (319)
Q Consensus 306 IngkhiWarky 316 (319)
|+||.+=+..-
T Consensus 112 l~gr~i~V~~a 122 (136)
T 2hgl_A 112 MGHRYIEVFKS 122 (136)
T ss_dssp SSSSEEEEEEC
T ss_pred ECCEEEEEEEC
Confidence 89998766543
No 101
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=8.3e-06 Score=64.39 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=60.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+++|| +|.| ++++||++||.. ||. + .|.|-.. ..++...||.|.|.+++.....|. .+ ...|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-~-~v~i~~d-~~g~~~G~afV~F~~~~~a~~Al~-~~--~~~~~ 80 (102)
T 1wez_A 11 QSTTGHCVHM---RGLPYRATENDIYNFFSP-LNP-M-RVHIEIG-PDGRVTGEADVEFATHEDAVAAMA-KD--KANMQ 80 (102)
T ss_dssp CCSSSCEEEE---ESCCTTCCHHHHHHSSCS-CCC-S-EEEEEES-SSSCEEEEEEEECSSSHHHHHHHT-TS--SCCSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCc-e-EEEEEEC-CCCCEeeEEEEEECCHHHHHHHHH-hC--CCeEC
Confidence 4667789988 7888 999999999996 993 4 6666555 478899999999999999888885 22 23678
Q ss_pred CceeEEEec
Q 038714 308 GKHKIIQIL 316 (319)
Q Consensus 308 gkhiWarky 316 (319)
||.+-+..-
T Consensus 81 gr~i~V~~~ 89 (102)
T 1wez_A 81 HRYVELFLN 89 (102)
T ss_dssp SSCCEEEEE
T ss_pred CcEEEEEEC
Confidence 888766543
No 102
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.99 E-value=2.6e-06 Score=69.56 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=58.9
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeE-EEeeecCCCCCCCceEEEEecchhhHHHH---hCCCCeeeE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEA-INMQEVASSTEQPLFARLVMDSASFMDVV---LGGKSKAKF 304 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~-v~mq~~~~~~~qplfariVf~s~~~v~~v---L~g~~~~kf 304 (319)
....+++|| +|.| ++|+||+++|.+ ||...+. |.+-..+.+++..+||+|.|.+. ..... |+|. ...+
T Consensus 20 ~~~~~~lfV---~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~-~~~~ 93 (131)
T 2m2b_A 20 ENANDTIIL---RNLNPHSTMDSILGALAP-YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL-HPPL 93 (131)
T ss_dssp SCCCCEEEE---CSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC-CCSC
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC-CCCc
Confidence 456789988 8988 999999999985 9985441 43333326789999999999998 54433 5564 1345
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
.|+||.+-++...|
T Consensus 94 ~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 94 TIDGKTINVEFAKG 107 (131)
T ss_dssp CGGGCCCCCEECCC
T ss_pred cCCCEEEEEEECCC
Confidence 68898886665444
No 103
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.99 E-value=1.3e-05 Score=61.78 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=59.9
Q ss_pred cCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeE-------EEeeecCCCCCCCceEEEEecchhhHHHHh---
Q 038714 229 TVPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEA-------INMQEVASSTEQPLFARLVMDSASFMDVVL--- 296 (319)
Q Consensus 229 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~-------v~mq~~~~~~~qplfariVf~s~~~v~~vL--- 296 (319)
..+...+++|| +|.| ++++||+++|.+ ||...+. +.+-..+.+++..+||.|.|.+.+.....+
T Consensus 8 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 8 HSHSDNNTIFV---QGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CSCCCCSEEEE---ECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 35777899998 7888 999999999996 9985441 555443367888999999999999877665
Q ss_pred CCCCeeeEEEcCceeEEEe
Q 038714 297 GGKSKAKFSINGKHKIIQI 315 (319)
Q Consensus 297 ~g~~~~kf~IngkhiWark 315 (319)
+|. .++|+.+-++.
T Consensus 84 ~g~-----~~~g~~l~V~~ 97 (99)
T 2la6_A 84 DGK-----EFSGNPIKVSF 97 (99)
T ss_dssp TTC-----BSSSSBCEEEE
T ss_pred CCC-----EeCCcEEEEEe
Confidence 454 47888886653
No 104
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=1.4e-05 Score=60.56 Aligned_cols=75 Identities=15% Similarity=0.329 Sum_probs=57.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+++.+|+|| +|.| ++++||+++|.+ ||. |+.|.|. ..||.|.|.+.+....++...+. ..|+
T Consensus 4 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g--~~~~ 68 (90)
T 2dnq_A 4 GSSGMVKLFI---GNLPREATEQEIRSLFEQ-YGK-VLECDII--------KNYGFVHIEDKTAAEDAIRNLHH--YKLH 68 (90)
T ss_dssp CSSCCEEEEE---ESCCSSCCHHHHHHHHHT-SSC-EEEEEEE--------TTEEEEEESSHHHHHHHHHHHTT--CBCS
T ss_pred CCCCCeEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEE--------CCEEEEEECCHHHHHHHHHHhcC--CccC
Confidence 3667899999 6887 999999999996 998 6777774 35999999999987776542111 2478
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 69 g~~l~v~~a~~~ 80 (90)
T 2dnq_A 69 GVNINVEASKNK 80 (90)
T ss_dssp SCBCEEECSSCC
T ss_pred CcEEEEEECCCC
Confidence 999887766543
No 105
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.98 E-value=1.6e-05 Score=60.23 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=56.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
-+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+-+ .||.|.|.+.+....++...+. ..++
T Consensus 5 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g--~~~~ 69 (90)
T 2dnp_A 5 SSGNTWKIFV---GNVSAACTSQELRSLFER-RGR-VIECDVVK--------DYAFVHMEKEADAKAAIAQLNG--KEVK 69 (90)
T ss_dssp SSCCSCCEEE---ESCCTTCCHHHHHHHHHH-HSC-EEEEEECS--------SCEEEEESCHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHc-CCC-EEEEEEEC--------CEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 3567799998 6877 999999999997 999 77777742 1999999999987776542111 2579
Q ss_pred CceeEEEeccC
Q 038714 308 GKHKIIQILKN 318 (319)
Q Consensus 308 gkhiWarky~p 318 (319)
|+.+-++...|
T Consensus 70 g~~l~v~~a~~ 80 (90)
T 2dnp_A 70 GKRINVELSTK 80 (90)
T ss_dssp TEECEEEESCC
T ss_pred CcEEEEEECCC
Confidence 99987776554
No 106
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.98 E-value=1e-05 Score=61.49 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=57.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
++..+++|| +|.| ++++||+++|.+ ||.+.+...+.+. ..++...||.|.|.+++.....+...+. ..|+|
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g 84 (95)
T 2ek1_A 12 KPGPTVIKV---QNMPFTVSIDEILDFFYG-YQVIPGSVCLKYN-EKGMPTGEAMVAFESRDEATAAVIDLND--RPIGS 84 (95)
T ss_dssp ---CEEEEE---ECCCTTCCHHHHHHHTTT-SCBCTTCCEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCCccceEEEEeC-CCCCEeeEEEEEECCHHHHHHHHHHhCC--CeECC
Confidence 344589988 7888 999999999986 9986555555555 6788899999999999987776642111 15789
Q ss_pred ceeEEEe
Q 038714 309 KHKIIQI 315 (319)
Q Consensus 309 khiWark 315 (319)
+.+-+..
T Consensus 85 r~l~v~~ 91 (95)
T 2ek1_A 85 RKVKLSG 91 (95)
T ss_dssp EECEEEC
T ss_pred cEEEEEe
Confidence 8886654
No 107
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.96 E-value=7.5e-06 Score=65.48 Aligned_cols=75 Identities=11% Similarity=0.141 Sum_probs=55.8
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCc
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGK 309 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ingk 309 (319)
+..++||| ++.| ++|+|++++|.+ ||. |+.|.|-. ...||+|.|.+.+.....+...+.-+..|+||
T Consensus 13 ~p~~~l~V---~nLp~~~te~~L~~~F~~-fG~-V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 13 SVSPVVHV---RGLCESVVEADLVEALEK-FGT-ICYVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp CCCSEEEE---ESCCSSCCHHHHHHHHTT-TSC-EEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 44689999 7887 999999999986 998 55666633 25799999999988776665322223568999
Q ss_pred eeEEEecc
Q 038714 310 HKIIQILK 317 (319)
Q Consensus 310 hiWarky~ 317 (319)
.+.+....
T Consensus 82 ~l~V~~a~ 89 (104)
T 1wex_A 82 QAFFNYST 89 (104)
T ss_dssp BCEEEECS
T ss_pred EEEEEEcc
Confidence 98776543
No 108
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.96 E-value=2.7e-05 Score=68.00 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=56.8
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf~ 305 (319)
+...+|||| +|.| ++|+||+++|.+ ||+ |++|.+-....+++..+||+|.|.+.+.....+. |. .
T Consensus 12 ~~p~~tlfV---gnLp~~~te~~L~~~F~~-~G~-I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~-----~ 81 (213)
T 4f02_A 12 SYPMASLYV---GDLHPDVTEAMLYEKFSP-AGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD-----V 81 (213)
T ss_dssp ---CCEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----E
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-hCC-EEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhh-----h
Confidence 445689998 8988 999999999986 999 5555544332789999999999999999887764 42 5
Q ss_pred EcCceeEEEe
Q 038714 306 INGKHKIIQI 315 (319)
Q Consensus 306 IngkhiWark 315 (319)
++||.+.+..
T Consensus 82 ~~g~~i~~~~ 91 (213)
T 4f02_A 82 IKGKPVRIMW 91 (213)
T ss_dssp ETTEECEEEE
T ss_pred cCCccccccc
Confidence 7888776654
No 109
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.95 E-value=9.8e-06 Score=63.29 Aligned_cols=75 Identities=13% Similarity=0.258 Sum_probs=58.3
Q ss_pred CceEEEEccCCCcC--------CHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHH---hCCCCee
Q 038714 234 ERTIFLTFSKGYPI--------SENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVV---LGGKSKA 302 (319)
Q Consensus 234 ~Rt~FvTFS~G~Pv--------se~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~v---L~g~~~~ 302 (319)
++|+|| +|.|. ++++|+++|.+ ||. |++|.|-..+.+++..+||+|.|.+.+..... |+|.
T Consensus 6 ~~~vfV---~nLp~v~~~~~~~~~~~L~~~F~~-~G~-i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~--- 77 (100)
T 3ns6_A 6 DQYIVV---NGAPVIPSAKVPVLKKALTSLFSK-AGK-VVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK--- 77 (100)
T ss_dssp GGEEEE---ESCCCCBGGGHHHHHHHHHHHHHT-TSC-EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC---
T ss_pred CcEEEE---eCCCcCChHHHHHHHHHHHHHHHh-cCC-EeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc---
Confidence 578988 78775 78999999996 998 56666654436789999999999998876655 4664
Q ss_pred eEEEcC-ceeEEEeccC
Q 038714 303 KFSING-KHKIIQILKN 318 (319)
Q Consensus 303 kf~Ing-khiWarky~p 318 (319)
.|+| +.+-++...|
T Consensus 78 --~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 78 --RLDLKHRLFLYTMKD 92 (100)
T ss_dssp --BSSSSCBCEEEESHH
T ss_pred --ccCCCeEEEEEECch
Confidence 4788 8888877655
No 110
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.95 E-value=2.1e-05 Score=69.01 Aligned_cols=73 Identities=16% Similarity=0.298 Sum_probs=60.9
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCce
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGKH 310 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ingkh 310 (319)
+.||+|| +|.| +++++|+++|.+ ||. |..|.|-.. ..++..+||+|.|.+++....++..... .++|+.
T Consensus 108 ~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~-v~~v~i~~~-~~~~~kG~aFVeF~~~e~A~~A~~~~~~---~~~Gr~ 178 (193)
T 2voo_A 108 KNRSVYI---KGFPTDATLDDIKEWLED-KGQ-VLNIQMRRT-LHKAFKGSIFVVFDSIESAKKFVETPGQ---KYKETD 178 (193)
T ss_dssp HHTEEEE---ECCCTTCCHHHHHHHHTT-SCC-EEEEEEEEC-TTCCEEEEEEEEESSHHHHHHHHHCTTC---EETTEE
T ss_pred ccCEEEe---cCCCCcCCHHHHHHHHhc-CCC-EEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHhCCC---eECCEE
Confidence 3589988 8888 999999999996 999 778888776 5688899999999999999999875432 799998
Q ss_pred eEEE
Q 038714 311 KIIQ 314 (319)
Q Consensus 311 iWar 314 (319)
+-++
T Consensus 179 l~V~ 182 (193)
T 2voo_A 179 LLIL 182 (193)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8444
No 111
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.95 E-value=2.1e-05 Score=63.41 Aligned_cols=76 Identities=11% Similarity=0.182 Sum_probs=58.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
.+..|++|| ++.| +|++|+++.|.+ ||. |.+|.|-+ ...||+|.|.+.+.....+..-+...+.|+|
T Consensus 18 ~~ps~~l~V---~NLp~~~te~~L~~lF~~-fG~-V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 18 TPASPVVHI---RGLIDGVVEADLVEALQE-FGP-ISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp CCCCSEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHhc-cCC-EEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 345689988 8877 999999999996 999 66776643 2469999999998877776644444578999
Q ss_pred ceeEEEecc
Q 038714 309 KHKIIQILK 317 (319)
Q Consensus 309 khiWarky~ 317 (319)
|.+.+.--.
T Consensus 87 r~i~V~~S~ 95 (100)
T 3r27_A 87 HPAFVNYST 95 (100)
T ss_dssp EEEEEEECS
T ss_pred cEEEEEecc
Confidence 999876443
No 112
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.94 E-value=9.3e-06 Score=62.02 Aligned_cols=75 Identities=23% Similarity=0.289 Sum_probs=57.5
Q ss_pred CCCCceEEEEccCCCc--CCHHHHH----HHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCe
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIR----DFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSK 301 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~----~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~ 301 (319)
++..+++|| +|.| ++++||+ ++|.+ ||. |+.|.+-+. ++...||.|.|.+.+.....+ +|.
T Consensus 5 ~~~~~~l~V---~nLp~~~~~~~l~~~l~~~f~~-~G~-i~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~-- 74 (97)
T 1nu4_A 5 TRPNHTIYI---NNLNEKIKKDELKKSLHAIFSR-FGQ-ILDILVSRS---LKMRGQAFVIFKEVSSATNALRSMQGF-- 74 (97)
T ss_dssp -CCCSEEEE---ESCCTTSCHHHHHHHHHHHHGG-GSC-EEEEECCHH---HHHTTCEEEEESSHHHHHHHHHHHTTC--
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHHHHHh-CCC-EEEEEEEcC---CCcCcEEEEEeCCHHHHHHHHHHhCCC--
Confidence 445689998 6877 9999999 99986 998 666776543 556689999999999877665 452
Q ss_pred eeEEEcCceeEEEeccC
Q 038714 302 AKFSINGKHKIIQILKN 318 (319)
Q Consensus 302 ~kf~IngkhiWarky~p 318 (319)
.|+|+.+-++...|
T Consensus 75 ---~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 75 ---PFYDKPMRIQYAKT 88 (97)
T ss_dssp ---EETTEECEEEECSS
T ss_pred ---EECCcEEEEEEccC
Confidence 56999987776554
No 113
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.94 E-value=2.9e-05 Score=59.08 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=56.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.+-+ .||.|.|.+.+.....+..-+. ..|+
T Consensus 6 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g--~~~~ 70 (92)
T 2dgt_A 6 SGKASTKLHV---GNISPTCTNQELRAKFEE-YGP-VIECDIVK--------DYAFVHMERAEDAVEAIRGLDN--TEFQ 70 (92)
T ss_dssp CCCSSEEEEE---ESCCSSCCHHHHHHHHHT-TSC-CCEEEECS--------SEEEEEESCHHHHHHHHHHHTT--EEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEC--------CEEEEEECCHHHHHHHHHHhCC--CeeC
Confidence 4667799998 7877 999999999997 998 66777632 1999999998887766642111 2579
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 71 g~~l~V~~a~~~ 82 (92)
T 2dgt_A 71 GKRMHVQLSTSR 82 (92)
T ss_dssp TEEEEEEESSCC
T ss_pred CcEEEEEEccCC
Confidence 999988776553
No 114
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.94 E-value=2e-05 Score=58.76 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=51.2
Q ss_pred CceEEEEccCCCc--C------CHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEE
Q 038714 234 ERTIFLTFSKGYP--I------SENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFS 305 (319)
Q Consensus 234 ~Rt~FvTFS~G~P--v------se~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~ 305 (319)
++|+|| +|.| + ++++++++|.+ ||. |+.|.|-+ .+++..+||.|.|.+.+.....+..-+-. .
T Consensus 1 ~~~l~V---~nLp~~~~~~~~~t~~~l~~~F~~-~G~-i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~--~ 71 (81)
T 2krb_A 1 DSVIVV---DNVPQVGPDRLEKLKNVIHKIFSK-FGK-ITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGY--K 71 (81)
T ss_dssp CCEEEE---ESCCCCCTTTHHHHHHHHHHHHHT-TCC-EEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSC--C
T ss_pred CCEEEE---eCCCCCcHHHHHHHHHHHHHHHhh-cCC-eEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCc--c
Confidence 368887 7877 4 56999999986 999 66677753 56889999999999999988877642211 3
Q ss_pred EcCc
Q 038714 306 INGK 309 (319)
Q Consensus 306 Ingk 309 (319)
++|+
T Consensus 72 ~~g~ 75 (81)
T 2krb_A 72 LDKQ 75 (81)
T ss_dssp CSSS
T ss_pred cCCc
Confidence 6777
No 115
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.93 E-value=1.6e-05 Score=65.09 Aligned_cols=75 Identities=11% Similarity=0.169 Sum_probs=58.7
Q ss_pred CceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeEEEcC
Q 038714 234 ERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKFSING 308 (319)
Q Consensus 234 ~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf~Ing 308 (319)
.||+|| +|.| ++++||+++|.+ ||+ |+.|.+-.....++..+||.|.|.+++.....+. |. .++|
T Consensus 3 ~~~l~v---~nlp~~~~~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-----~~~g 72 (168)
T 1b7f_A 3 NTNLIV---NYLPQDMTDRELYALFRA-IGP-INTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI-----TVRN 72 (168)
T ss_dssp CSEEEE---ECCCTTCCHHHHHHHHHT-TSC-EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-----EETT
T ss_pred ccEEEE---eCCCCCCCHHHHHHHHHh-cCC-eeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCC-----EeCC
Confidence 479988 7988 999999999986 999 5566654432678889999999999999877664 43 5688
Q ss_pred ceeEEEeccC
Q 038714 309 KHKIIQILKN 318 (319)
Q Consensus 309 khiWarky~p 318 (319)
+.+-++...|
T Consensus 73 ~~l~v~~~~~ 82 (168)
T 1b7f_A 73 KRLKVSYARP 82 (168)
T ss_dssp EECEEEECCC
T ss_pred cEEEEEecCC
Confidence 8887665443
No 116
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=2.8e-05 Score=59.96 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=56.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+.+.+|+|| +|.| ++++||+++|.+ ||. |+.+.|- +...||+|.|.+.+.....+ +|.
T Consensus 23 ~~~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~-i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~----- 86 (101)
T 2la4_A 23 APPRVTTAYI---GNIPHFATEADLIPLFQN-FGF-ILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANF----- 86 (101)
T ss_dssp SCSSCCEEEE---ESCCTTCCHHHHHHHHHT-TSC-CSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---cCCCcccCHHHHHHHHHh-CCC-EEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCC-----
Confidence 3556789998 7877 999999999986 998 6677774 34689999999998877665 453
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
.|+|+.+-++...|
T Consensus 87 ~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 87 PFQGRNLRTGWGKE 100 (101)
T ss_dssp EETTEECCCCBCCC
T ss_pred eECCeEEEEEeccC
Confidence 57899886655444
No 117
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.92 E-value=1.2e-05 Score=66.85 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=60.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCcee-EEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFE-AINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSI 306 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie-~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~I 306 (319)
.+++.+++|| +|.| ++|+||++||.. | ..++ .|.|-.. ..++..+||.|.|.+++..+..|.-.. -.|
T Consensus 38 ~~~~~~~lfV---gnLp~~~te~dL~~~F~~-~-~i~~~~v~i~~d-~~GrsrGfaFV~F~~~e~A~~Al~~~~---~~l 108 (126)
T 2hgm_A 38 DSANDGFVRL---RGLPFGCTKEEIVQFFSG-L-EIVPNGITLPVD-PEGKITGEAFVQFASQELAEKALGKHK---ERI 108 (126)
T ss_dssp CSSSCCEEEE---ECCCTTCCHHHHHHHTTT-S-CEEEEEEECCCC-SSSSSCSEEEEEESSTTHHHHHHTTTT---CCB
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHhc-C-CceeeEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHHCC---CEE
Confidence 4567788888 8988 999999999997 7 4442 7777655 348999999999999999998887322 368
Q ss_pred cCceeEEEec
Q 038714 307 NGKHKIIQIL 316 (319)
Q Consensus 307 ngkhiWarky 316 (319)
+||.|-+.+-
T Consensus 109 ~gR~I~V~~a 118 (126)
T 2hgm_A 109 GHRYIEVFKS 118 (126)
T ss_dssp TTBCCCCEEE
T ss_pred CCEEEEEEEC
Confidence 8998766543
No 118
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=1.1e-05 Score=63.72 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=58.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCc---eeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGEC---FEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc---ie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf 304 (319)
.++..+++|| +|.| ++++||+++|.+ ||.+ +..+.+ ..++...||+|.|.+.+....++..-+. .
T Consensus 21 ~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~----~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~ 90 (115)
T 2cpx_A 21 PGEPNKVLYL---KNLSPRVTERDLVSLFAR-FQEKKGPPIQFRM----MTGRMRGQAFITFPNKEIAWQALHLVNG--Y 90 (115)
T ss_dssp CCSCCSEEEE---ECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEE----ECSSSCSEEEEECSSHHHHHHHHHHSTT--C
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCccceEEEEEc----CCCccceEEEEEECCHHHHHHHHHHhCC--C
Confidence 3456789998 7887 999999999997 9963 234444 2578889999999999987776642221 2
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
.|+|+.+-++...|
T Consensus 91 ~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 91 KLYGKILVIEFGKN 104 (115)
T ss_dssp BCSSCBCEEEECCC
T ss_pred EeCCcEEEEEEccC
Confidence 36899998776554
No 119
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.89 E-value=1.4e-05 Score=61.70 Aligned_cols=73 Identities=15% Similarity=0.397 Sum_probs=57.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
...+.+++|| +|.| ++++||+++|.+ ||. |+.|.|.. ...||.|.|.+.+....++ +|..
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~---- 75 (99)
T 2cpj_A 11 TFTQRSRLFV---GNLPPDITEEEMRKLFEK-YGK-AGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMP---- 75 (99)
T ss_dssp CCCCTTEEEE---ESCCTTCCHHHHHHHTST-TCC-CSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCC----
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHhh-cCC-eEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCE----
Confidence 4567799999 7877 999999999986 998 67777743 2579999999998877765 4543
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
|+|+.+-++...|
T Consensus 76 -~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 76 -LRGKQLRVRFACH 88 (99)
T ss_dssp -BTTBCCEEEESSC
T ss_pred -eCCceEEEEEcCC
Confidence 7899887766554
No 120
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.89 E-value=1.4e-05 Score=61.05 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=60.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
..++.+|+|| +|.| ++++||+++|.+ ||++ ..+ . ..+....||.|.|.+.+.....+...+. ..|+
T Consensus 12 ~~~~~~~l~V---~nL~~~~t~~~l~~~F~~-~g~v-~~~----~-~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 79 (96)
T 1fjc_A 12 KVRAARTLLA---KNLSFNITEDELKEVFED-ALEI-RLV----S-QDGKSKGIAYIEFKSEADAEKNLEEKQG--AEID 79 (96)
T ss_dssp TTTGGGEEEE---ESCCSSCCHHHHHHHHCS-EEEE-CCE----E-ETTEEEEEEEEEESSHHHHHHHHHHTTE--EEET
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHhh-CCcE-EEe----C-CCCCcceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 3456789998 7887 999999999997 9974 333 2 4578889999999999998888764332 4689
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 80 g~~l~v~~a~~~ 91 (96)
T 1fjc_A 80 GRSVSLYYTGEK 91 (96)
T ss_dssp TEEEEEEECSSS
T ss_pred CeEEEEEEcCCC
Confidence 999988766553
No 121
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=1.9e-05 Score=64.15 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf 304 (319)
.+++.+++|| +|.| ++|+||+++|.+ ||. |..|.|-. ...||+|.|.+.+.....+. |. ..
T Consensus 12 ~~~~~~~LfV---~nLp~~vte~dL~~lF~~-fG~-V~~v~i~~------~kGfaFVeF~~~~~A~~Ai~~l~~~---~~ 77 (105)
T 1sjq_A 12 SGVPSRVIHI---RKLPIDVTEGEVISLGLP-FGK-VTNLLMLK------GKNQAFIEMNTEEAANTMVNYYTSV---TP 77 (105)
T ss_dssp CCCCCCEEEE---CSCCTTSCHHHHHHHHHH-HCC-EEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTS---CC
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEc------CCCEEEEEECCHHHHHHHHHHhccC---Cc
Confidence 4677899999 8988 999999999997 999 55666533 15899999999887555544 32 23
Q ss_pred EEcCceeEEEec
Q 038714 305 SINGKHKIIQIL 316 (319)
Q Consensus 305 ~IngkhiWarky 316 (319)
.|+||.+.+..-
T Consensus 78 ~l~Gr~l~V~~A 89 (105)
T 1sjq_A 78 VLRGQPIYIQFS 89 (105)
T ss_dssp EETTEECCBCCC
T ss_pred eECCEEEEEEEc
Confidence 689998865443
No 122
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.88 E-value=5.6e-05 Score=61.46 Aligned_cols=74 Identities=12% Similarity=0.220 Sum_probs=58.6
Q ss_pred CceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeEEEcC
Q 038714 234 ERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKFSING 308 (319)
Q Consensus 234 ~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf~Ing 308 (319)
.||+|| +|.| ++++||+++|.+ ||+ |+.+.+-..+..++...||.|.|.+++.....+. |. .++|
T Consensus 2 ~~~l~v---~nlp~~~~~~~l~~~f~~-~G~-i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-----~~~g 71 (167)
T 1fxl_A 2 KTNLIV---NYLPQNMTQEEFRSLFGS-IGE-IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL-----RLQT 71 (167)
T ss_dssp CSEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----EETT
T ss_pred cceEEE---cCCCCCCCHHHHHHHHHh-cCC-eEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCC-----ccCC
Confidence 478988 7888 999999999996 998 6666665542578899999999999999877764 52 5788
Q ss_pred ceeEEEecc
Q 038714 309 KHKIIQILK 317 (319)
Q Consensus 309 khiWarky~ 317 (319)
+.+-++...
T Consensus 72 ~~l~v~~~~ 80 (167)
T 1fxl_A 72 KTIKVSYAR 80 (167)
T ss_dssp EECEEEECC
T ss_pred ceEEEEecC
Confidence 888765543
No 123
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=1.3e-05 Score=63.77 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=57.1
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
.+..+++|| ++.| ++|+|++++|.+ ||. |..|.|-. ...||+|.|.+.+.....+...+.-...|+|
T Consensus 12 ~~p~~~l~V---~nLp~~~te~~L~~~F~~-fG~-v~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 12 GAPSRVLHI---RKLPGEVTETEVIALGLP-FGK-VTNILMLK------GKNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp SSCCSEEEE---ESCCTTCCHHHHHHTTTT-TSC-EEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 345689998 7877 999999999996 999 55566533 1689999999998877766532212357899
Q ss_pred ceeEEEeccC
Q 038714 309 KHKIIQILKN 318 (319)
Q Consensus 309 khiWarky~p 318 (319)
|.+.+....+
T Consensus 81 r~l~V~~a~~ 90 (101)
T 2cq1_A 81 QPIYIQYSNH 90 (101)
T ss_dssp EECEEEECSC
T ss_pred cEEEEEEcCc
Confidence 9997765443
No 124
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=5.2e-05 Score=58.31 Aligned_cols=75 Identities=8% Similarity=0.127 Sum_probs=57.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.++..+++|| +|.| ++++||+++|.+ ||.+...+.. ++...||.|.|.+.+....++ +|.
T Consensus 15 ~~~~~~~l~V---~nL~~~~t~~~l~~~F~~-~G~v~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~----- 79 (97)
T 2e5j_A 15 GAPLAADVYV---GNLPRDARVSDLKRALRE-LGSVPLRLTW------QGPRRRAFLHYPDSAAAQQAVSCLQGL----- 79 (97)
T ss_dssp SSCCCCEEEE---ECCCTTCCHHHHHHHHHH-TTCCCSEEEE------ETTTTEEEEECSSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---eCCCCcCcHHHHHHHHHh-cCCEEEEEEc------CCCCcEEEEEECCHHHHHHHHHHhCCC-----
Confidence 3556789998 7877 999999999996 9985433332 356789999999999877665 564
Q ss_pred EEcCceeEEEeccCC
Q 038714 305 SINGKHKIIQILKNN 319 (319)
Q Consensus 305 ~IngkhiWarky~pk 319 (319)
.|+|+.+-++...|+
T Consensus 80 ~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 80 RLGTDTLRVALARQQ 94 (97)
T ss_dssp CSSSSCCEEEECCCC
T ss_pred EECCcEEEEEEcCCC
Confidence 478999887766553
No 125
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=7.2e-05 Score=58.68 Aligned_cols=72 Identities=17% Similarity=0.278 Sum_probs=56.5
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~ 305 (319)
+...+|+|| +|.| ++++||+++|.+ ||. |+.|.|-.. ..||+|.|.+.+....++ +|. .
T Consensus 22 ~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~-i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~-----~ 85 (109)
T 1x4g_A 22 SPKNCTVYC---GGIASGLTDQLMRQTFSP-FGQ-IMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT-----T 85 (109)
T ss_dssp CSSCCEEEE---ECCSSCCCHHHHHHHHHH-HSC-EEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTC-----E
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCC-----E
Confidence 456789998 8888 999999999996 998 677777432 679999999999877766 452 5
Q ss_pred EcCceeEEEeccC
Q 038714 306 INGKHKIIQILKN 318 (319)
Q Consensus 306 IngkhiWarky~p 318 (319)
|+|+.+-++...|
T Consensus 86 ~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 86 IEGHVVKCYWGKE 98 (109)
T ss_dssp ETTEECEEECCCC
T ss_pred ECCcEEEEEecCC
Confidence 8899886665443
No 126
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.86 E-value=4.5e-05 Score=59.27 Aligned_cols=74 Identities=15% Similarity=0.254 Sum_probs=56.3
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
....|++|| +|.| ++++||+++|.+ ||. |+.|.+-+ .||.|.|.+.+.....+..-+. ..|+|
T Consensus 8 ~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~-i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g--~~~~g 72 (103)
T 2dgu_A 8 MAKVKVLFV---RNLANTVTEEILEKAFSQ-FGK-LERVKKLK--------DYAFIHFDERDGAVKAMEEMNG--KDLEG 72 (103)
T ss_dssp CCCCCCEEE---ECCCTTCCHHHHHHHHHH-HSC-EEEEEECS--------SCEEEEESSHHHHHHHHHHHTT--EEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCC--CccCC
Confidence 456789999 7877 999999999997 999 56666632 3999999999987777652111 25899
Q ss_pred ceeEEEeccCC
Q 038714 309 KHKIIQILKNN 319 (319)
Q Consensus 309 khiWarky~pk 319 (319)
+.+-++...|+
T Consensus 73 ~~l~v~~a~~~ 83 (103)
T 2dgu_A 73 ENIEIVFAKPP 83 (103)
T ss_dssp EEEEEEECCCC
T ss_pred CEEEEEEcCCC
Confidence 99988776553
No 127
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.86 E-value=3.3e-05 Score=65.09 Aligned_cols=83 Identities=17% Similarity=0.388 Sum_probs=63.5
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+...+++|| +|.| ++++||+++|.+ ||+ |+.|.+...+..+....||.|.|.+.+....++..-+. ..|+
T Consensus 110 ~~~~~~~l~v---~nl~~~~~~~~l~~~f~~-~G~-v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 182 (198)
T 2yh0_A 110 VPDSAHKLFI---GGLPNYLNDDQVKELLTS-FGP-LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG--MQLG 182 (198)
T ss_dssp SSCCCCEEEE---ECCCTTCCHHHHHHHHHT-BSC-EEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCC-ccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 3567789998 6877 999999999996 999 56666655435788899999999999887766542111 2579
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...|+
T Consensus 183 g~~l~v~~a~~~ 194 (198)
T 2yh0_A 183 DKKLLVQRASVG 194 (198)
T ss_dssp TEECEEEESCCC
T ss_pred CEEEEEEECCCC
Confidence 999988876664
No 128
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.85 E-value=3.7e-05 Score=61.09 Aligned_cols=71 Identities=20% Similarity=0.341 Sum_probs=55.5
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+- ..||.|.|.+.+....++ +|.
T Consensus 27 ~~~~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~-i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~----- 88 (108)
T 2jvo_A 27 GELSNTRLFV---RPFPLDVQESELNEIFGP-FGP-MKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGK----- 88 (108)
T ss_dssp -CCSCSEEEE---CSSCTTCCHHHHHHHHTT-TSC-CCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-EEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCC-----
Confidence 4567789998 7888 999999999986 998 6677764 579999999999877765 453
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
.|+|+.+-++...|
T Consensus 89 ~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 89 SFANQPLEVVYSKL 102 (108)
T ss_dssp EETTEECEEESCSC
T ss_pred EECCeEEEEEEecC
Confidence 46999887665443
No 129
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.84 E-value=5.6e-05 Score=59.29 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=55.2
Q ss_pred CCceEEEEccCCCc--C------CHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeE
Q 038714 233 DERTIFLTFSKGYP--I------SENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKF 304 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--v------se~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf 304 (319)
..+|+|| +|.| + ++++|+++|.+ ||. |+.|.|-+ .+++..+||+|.|.+.+.....+..-+- .
T Consensus 14 ~~~~l~V---~nLp~~~~~~~~~t~~~l~~~F~~-~G~-v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~ 84 (105)
T 2nlw_A 14 IDSVIVV---DNVPQVGPDRLEKLKNVIHKIFSK-FGK-ITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADG--Y 84 (105)
T ss_dssp CCSEEEE---ESCCCCCTTTTTHHHHHHHHHHGG-GSC-EEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSS--E
T ss_pred CCCEEEE---eCCCcchhhhhHHHHHHHHHHHhc-CCC-EEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCC--c
Confidence 3578988 7888 5 57999999986 999 66677753 5688999999999999987766553221 2
Q ss_pred EEcCc-eeEEEe
Q 038714 305 SINGK-HKIIQI 315 (319)
Q Consensus 305 ~Ingk-hiWark 315 (319)
.++|+ .+-+..
T Consensus 85 ~~~g~~~l~V~~ 96 (105)
T 2nlw_A 85 KLDKQHTFRVNL 96 (105)
T ss_dssp ECSTTCEEEEEC
T ss_pred ccCCCceEEEEE
Confidence 57898 565543
No 130
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.84 E-value=6.6e-05 Score=57.84 Aligned_cols=78 Identities=13% Similarity=0.254 Sum_probs=57.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHH----HHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIR----DFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKF 304 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~----~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf 304 (319)
..+..++|| +|.| ++++|++ ++|.+ ||. |+.|.|-..+.+ ..||+|.|.+.+.....+...+. .
T Consensus 6 ~~~~~~l~V---~nL~~~~~~~~l~~~l~~~F~~-~G~-v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g--~ 75 (96)
T 2dgx_A 6 SGNGADVQV---SNIDYRLSRKELQQLLQEAFAR-HGK-VKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHR--Y 75 (96)
T ss_dssp CSSCEEEEE---ESCCTTSCHHHHHHHHHHHHHH-HSC-EEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTT--E
T ss_pred CCCCCEEEE---ECCCCCCCHHHHHHHHHHhccc-cCc-EEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCC--C
Confidence 456678988 7877 9999999 99996 999 666666543122 66999999999887776542221 2
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
.|+||.+-++...|
T Consensus 76 ~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 76 KIGSKKILVSLATG 89 (96)
T ss_dssp EETTEEEEEEECCC
T ss_pred EECCeEEEEEEcCC
Confidence 58899987766544
No 131
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=8.2e-05 Score=58.51 Aligned_cols=75 Identities=9% Similarity=0.052 Sum_probs=56.1
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
+...+++|| +|.| ++++||+++|.+ ||+ |+.|.+... .||+|.|.+.+.....+...+. ..|+|
T Consensus 12 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g--~~~~g 77 (108)
T 1x4c_A 12 RRSENRVVV---SGLPPSGSWQDLKDHMRE-AGD-VCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN--TKFRS 77 (108)
T ss_dssp CSCCCEEEE---ESCCSSCCHHHHHHHHGG-GSC-EEEEEEETT-------TEEEEEESSHHHHHHHHHHSSS--EEEEC
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EeEEEEecC-------CEEEEEECCHHHHHHHHHHHCc--CCccC
Confidence 456678888 7887 999999999986 998 666666432 7999999999887776653221 25778
Q ss_pred -----ceeEEEeccCC
Q 038714 309 -----KHKIIQILKNN 319 (319)
Q Consensus 309 -----khiWarky~pk 319 (319)
+.+-++...|+
T Consensus 78 ~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 78 HEGETAYIRVKVDGPR 93 (108)
T ss_dssp TTSCEEEEEEEESSCC
T ss_pred CcCcceEEEEEeCCCC
Confidence 88877766553
No 132
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=2.7e-05 Score=59.80 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=56.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf~ 305 (319)
+...+++|| +|.| ++++||+++|.+ ||. |+.|.|.. + ..||.|.|.+.+....++. |. .
T Consensus 14 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~v~~~~----~--~g~afV~f~~~~~A~~A~~~l~g~-----~ 77 (97)
T 1why_A 14 ANPTTRLWV---GGLGPNTSLAALAREFDR-FGS-IRTIDHVK----G--DSFAYIQYESLDAAQAACAKMRGF-----P 77 (97)
T ss_dssp CCCCSCEEE---ECCCSSCCHHHHHHHHHT-TSC-EEEEEECS----S--SCCEEEEESSHHHHHHHHHHHTTC-----B
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eeEEEEeC----C--CCEEEEEECCHHHHHHHHHHHCCC-----E
Confidence 455689999 6777 999999999986 998 77777743 2 5699999999998776654 53 4
Q ss_pred Ec--CceeEEEeccCC
Q 038714 306 IN--GKHKIIQILKNN 319 (319)
Q Consensus 306 In--gkhiWarky~pk 319 (319)
|+ |+.+-++...|+
T Consensus 78 ~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 78 LGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CSSSSCBCEEEECCCC
T ss_pred eCCCCcEEEEEECCCC
Confidence 67 888877766553
No 133
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.83 E-value=6.9e-05 Score=55.85 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=55.1
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhc----C-------CceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKF----G-------ECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG 297 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~y----G-------dcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~ 297 (319)
+.+.||+|| +|.| ++++||+++|.+ | | . |..+.+.. ...||.|.|.+.+.....+
T Consensus 3 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~-v~~~~~~~------~kg~afV~f~~~~~a~~A~- 70 (87)
T 2hzc_A 3 LGSARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNP-VLAVQINQ------DKNFAFLEFRSVDETTQAM- 70 (87)
T ss_dssp SGGGGEEEE---ESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCS-EEEEEECS------SSSEEEEEESSHHHHHHHG-
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-HhhhcccccCCCCc-ceEEEecC------CCcEEEEEcCCHHHHHHHH-
Confidence 456789998 7877 999999999997 7 7 4 67777643 2689999999999988887
Q ss_pred CCCeeeEEEcCceeEEEe
Q 038714 298 GKSKAKFSINGKHKIIQI 315 (319)
Q Consensus 298 g~~~~kf~IngkhiWark 315 (319)
..+. ..++|+.+-+++
T Consensus 71 ~l~g--~~~~g~~l~V~r 86 (87)
T 2hzc_A 71 AFDG--IIFQGQSLKIRR 86 (87)
T ss_dssp GGTT--CEETTEECEEEC
T ss_pred hcCC--CEECCeEEEEeC
Confidence 4332 258999887764
No 134
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.83 E-value=3.5e-05 Score=65.20 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=58.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
..+.+|||| +|.| +++++|+++|.+ ||. |+.|.|...+.++....||+|.|.+.+....++...+. ..|+|
T Consensus 69 ~~~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g 141 (165)
T 1rk8_A 69 SVEGWILFV---TSIHEEAQEDEIQEKFCD-YGE-IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIMG 141 (165)
T ss_dssp CC-CEEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHhhc-CCC-EEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC--CEECC
Confidence 345688988 6887 999999999986 999 55666654336788899999999999887766542111 25799
Q ss_pred ceeEEEecc
Q 038714 309 KHKIIQILK 317 (319)
Q Consensus 309 khiWarky~ 317 (319)
+.+-+....
T Consensus 142 ~~l~V~~a~ 150 (165)
T 1rk8_A 142 QTIQVDWCF 150 (165)
T ss_dssp EECEEEESE
T ss_pred EEEEEEEec
Confidence 988665443
No 135
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=1.9e-05 Score=63.75 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=59.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
...+.+++|| +|.| ++++||++||.. | . |+.|.|-.. ..++..+||.|.|.+++..+..|. .+ .-.|+
T Consensus 12 ~~~~~~~v~V---~nLp~~~te~dl~~~F~~-~-~-v~~v~i~~d-~~g~~~G~afV~F~~~~~a~~Al~-~~--~~~~~ 81 (109)
T 2dnn_A 12 INPDDLYVSV---HGMPFSAMENDVRDFFHG-L-R-VDAVHLLKD-HVGRNNGNGLVKFLSPQDTFEALK-RN--RMLMI 81 (109)
T ss_dssp CCHHHHEEEE---ECCCSSCCHHHHHHHTTT-S-C-CCEEEECCC-TTCCCCSEEEEECSSHHHHHHHHH-TT--TEEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHhcc-C-C-eeEEEEEEC-CCCCCCeEEEEEECCHHHHHHHHh-cC--CCeEC
Confidence 3445678877 9988 999999999997 6 4 667777654 348899999999999999888874 22 23689
Q ss_pred CceeEEEec
Q 038714 308 GKHKIIQIL 316 (319)
Q Consensus 308 gkhiWarky 316 (319)
||.|.+.+-
T Consensus 82 gr~i~V~~a 90 (109)
T 2dnn_A 82 QRYVEVSPA 90 (109)
T ss_dssp TEEEEEEEC
T ss_pred CeEEEEEEC
Confidence 998877543
No 136
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.83 E-value=2.3e-05 Score=60.48 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=59.5
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+++.+|+|| +|.| ++++||+++|.. |++ ...+.+. ..++...||+|.|.+.+....++...+. ..|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~~~---~~~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 80 (102)
T 2fc8_A 11 RSQPSKTLFV---KGLSEDTTEETLKESFDG-SVR---ARIVTDR-ETGSSKGFGFVDFNSEEDAKAAKEAMED--GEID 80 (102)
T ss_dssp SSCCCSSEEE---ECCCTTCCHHHHHHTSTT-CSE---EEEEECS-SSCSEEEEEEEECSSHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCccCHHHHHHHhcC-CeE---EEEEecC-CCCCcCcEEEEEECCHHHHHHHHHHhCC--CeEC
Confidence 4667899998 6888 999999999994 543 3334443 5788889999999999987776542111 2589
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+.++...|+
T Consensus 81 g~~l~V~~a~~~ 92 (102)
T 2fc8_A 81 GNKVTLDWAKPK 92 (102)
T ss_dssp TEECEEEECCCC
T ss_pred CeEEEEEEecCC
Confidence 999988876654
No 137
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=0.0001 Score=56.65 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=55.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhc--CCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKF--GECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFS 305 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~y--Gdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~ 305 (319)
.....+++|| +|.| ++++||+++|.+ | |. |+.|.+- ..||.|.|.+.+....++...+. ..
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~g~-v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g--~~ 75 (99)
T 2cpd_A 11 TMSSVKILYV---RNLMLSTSEEMIEKEFNN-IKPGA-VERVKKI--------RDYAFVHFSNREDAVEAMKALNG--KV 75 (99)
T ss_dssp CSSCCCEEEE---ESCCTTCCHHHHHHHHHT-TSTTC-EEEEEEC--------SSEEEEEESSHHHHHHHHHHHSS--EE
T ss_pred ccCCcCEEEE---eCCCCCCCHHHHHHHHHh-cCCcc-eEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCC--CE
Confidence 4567799999 7877 999999999997 9 55 6666552 34999999999987776552221 25
Q ss_pred EcCceeEEEeccC
Q 038714 306 INGKHKIIQILKN 318 (319)
Q Consensus 306 IngkhiWarky~p 318 (319)
|+|+.+-++...|
T Consensus 76 ~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 76 LDGSPIEVTLAKP 88 (99)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCcEEEEEECCC
Confidence 7899987766554
No 138
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.82 E-value=1.1e-05 Score=68.01 Aligned_cols=76 Identities=12% Similarity=0.187 Sum_probs=56.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+.+.+++|| +|.| ++|+||++||.. || |+.|.+-.. ..++...||+|.|.+++..+..|. .+ ...|+
T Consensus 42 ~~~~~~~lfV---~nLp~~~te~dL~~~F~~-~G--i~~v~i~~d-~~g~srGfaFV~F~~~e~A~~Al~-~~--g~~l~ 111 (139)
T 2hgn_A 42 QSTTGHCVHM---RGLPYKATENDIYNFFSP-LN--PVRVHIEIG-PDGRVTGEADVEFATHEEAVAAMS-KD--RANMQ 111 (139)
T ss_dssp ---CCCCEEC---CSCCTTCCHHHHHHHHCS-CC--CSEEECCCS-SSSCSSCCCEEECSHHHHHHHHTT-CC--SCSSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC--CeEEEEEEC-CCCCCceEEEEEeCCHHHHHHHHh-hC--CCEEC
Confidence 4567788887 8988 999999999997 99 347776654 348899999999999999988883 22 23578
Q ss_pred CceeEEEe
Q 038714 308 GKHKIIQI 315 (319)
Q Consensus 308 gkhiWark 315 (319)
||.|-+..
T Consensus 112 gR~i~V~~ 119 (139)
T 2hgn_A 112 HRYIELFL 119 (139)
T ss_dssp SCCCCCEE
T ss_pred CEEEEEEE
Confidence 88765543
No 139
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=8.9e-05 Score=55.12 Aligned_cols=71 Identities=21% Similarity=0.391 Sum_probs=54.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCC-CeeeEEE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGK-SKAKFSI 306 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~-~~~kf~I 306 (319)
.+...+|+|| +|.| ++++||+++|.+ ||+ |+.+.+-.. ..||.|.|.+.+....++..- + ...+
T Consensus 8 ~~~~~~~l~V---~~l~~~~t~~~l~~~f~~-~G~-i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~--~~~~ 74 (85)
T 2ytc_A 8 EDKTITTLYV---GGLGDTITETDLRNHFYQ-FGE-IRTITVVQR------QQCAFIQFATRQAAEVAAEKSFN--KLIV 74 (85)
T ss_dssp SCSSCCCEEE---ECCTTTSCHHHHHHHHHT-TSC-EEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTT--TCEE
T ss_pred CCCCccEEEE---cCCCCCCCHHHHHHHHHh-CCC-EeEEEEECC------CCEEEEEECCHHHHHHHHHHhcC--CeeE
Confidence 3556789988 6877 999999999986 999 777777542 479999999999988877532 1 1268
Q ss_pred cCceeEE
Q 038714 307 NGKHKII 313 (319)
Q Consensus 307 ngkhiWa 313 (319)
+|+.+-+
T Consensus 75 ~g~~l~v 81 (85)
T 2ytc_A 75 NGRRLNV 81 (85)
T ss_dssp TTEECCE
T ss_pred CCCEEEE
Confidence 8887744
No 140
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.80 E-value=2.1e-05 Score=65.37 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=62.6
Q ss_pred cCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEE
Q 038714 229 TVPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSI 306 (319)
Q Consensus 229 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~I 306 (319)
.-+.+.+++|| +|.| ++++||+++|.+ ||.... +.+.+. ..++...||.|.|.+++.....|. .-...|
T Consensus 8 ~~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~g~~~~-~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~---l~g~~~ 78 (175)
T 1fje_B 8 SESTTPFNLFI---GNLNPNKSVAELKVAISE-LFAKND-LAVVDV-RTGTNRKFGYVDFESAEDLEKALE---LTGLKV 78 (175)
T ss_dssp SSCSSSEEEEE---ECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEE-EEETTTTEEEEEESSHHHHHHHHH---GGGEEE
T ss_pred CCCCCCcEEEE---eCCCCCCCHHHHHHHHHH-hCCcce-EEEEEC-CCCccccEEEEEECCHHHHHHHHh---cCCCEe
Confidence 35778899999 7888 899999999997 886444 444444 567888999999999999888874 223478
Q ss_pred cCceeEEEeccC
Q 038714 307 NGKHKIIQILKN 318 (319)
Q Consensus 307 ngkhiWarky~p 318 (319)
+|+.+-++...+
T Consensus 79 ~g~~l~v~~~~~ 90 (175)
T 1fje_B 79 FGNEIKLEKPKG 90 (175)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEecCCC
Confidence 899998876554
No 141
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.77 E-value=3.2e-05 Score=62.96 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=56.4
Q ss_pred CCCCCceEEEEccCCCcCCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEEE
Q 038714 230 VPPDERTIFLTFSKGYPISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFSI 306 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~Pvse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~I 306 (319)
.+.+.+|+|| +|+.++++||+++|.+ ||. |+.|.|- +...||+|.|.+.+.....+ +|. .|
T Consensus 35 ~~~~~~~lfV---gnl~~te~~L~~~F~~-~G~-I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~-----~~ 98 (121)
T 2bz2_A 35 APRKGNTLYV---YGEDMTPTLLRGAFSP-FGN-IIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT-----QV 98 (121)
T ss_dssp CCCCCCEEEE---ECSSCCHHHHHHHHST-TCC-CSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC-----BC
T ss_pred CCCCCCEEEE---cCCCCCHHHHHHHHHc-cCC-EEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCC-----EE
Confidence 4567899999 4689999999999986 999 5666663 45679999999998877665 554 36
Q ss_pred cCceeEEEeccC
Q 038714 307 NGKHKIIQILKN 318 (319)
Q Consensus 307 ngkhiWarky~p 318 (319)
+|+.+-+....|
T Consensus 99 ~g~~l~V~~a~~ 110 (121)
T 2bz2_A 99 ESVQLKVNIARK 110 (121)
T ss_dssp SSCBCEEEECCS
T ss_pred CCeEEEEEEeCC
Confidence 888886665443
No 142
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.77 E-value=4.1e-05 Score=65.40 Aligned_cols=79 Identities=15% Similarity=0.223 Sum_probs=57.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
.++.||+|| +|.| ++++||+++|.+ ||. |+.|.+-.....++...||.|.|.+++.....|...+. ..|+|
T Consensus 25 ~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g 97 (216)
T 2qfj_A 25 LAIMSRVYV---GSIYYELGEDTIRQAFAP-FGP-IKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS--VMLGG 97 (216)
T ss_dssp HHHHTEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS--CCCC-
T ss_pred cCcCCEEEE---ECCCCCCCHHHHHHHHHh-CCC-EEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC--CeeCC
Confidence 455689999 7888 999999999986 999 55565543326788999999999999998877652111 14788
Q ss_pred ceeEEEec
Q 038714 309 KHKIIQIL 316 (319)
Q Consensus 309 khiWarky 316 (319)
+.+.+...
T Consensus 98 ~~l~v~~~ 105 (216)
T 2qfj_A 98 RNIKVGRP 105 (216)
T ss_dssp CCCEEECC
T ss_pred eeEEEecC
Confidence 88877543
No 143
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.76 E-value=3.1e-05 Score=61.37 Aligned_cols=80 Identities=11% Similarity=0.228 Sum_probs=58.2
Q ss_pred CCceEEEEccCCCc--CCHHHHH---HHHHhhcCCceeEEEeeecCCC---CCCCceEEEEecchhhHHHHhCCCCeeeE
Q 038714 233 DERTIFLTFSKGYP--ISENEIR---DFFIRKFGECFEAINMQEVASS---TEQPLFARLVMDSASFMDVVLGGKSKAKF 304 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~---~fF~~~yGdcie~v~mq~~~~~---~~qplfariVf~s~~~v~~vL~g~~~~kf 304 (319)
..+++|| +|.| ++++||+ ++|.+ ||+ |+.|.|-..+.. ++...||.|.|.+++.....+...+- .
T Consensus 14 ~~~~l~V---~nLp~~~~~~~l~~~~~~F~~-~G~-i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng--~ 86 (111)
T 2cpi_A 14 QKNLVFV---VGLSQRLADPEVLKRPEYFGK-FGK-IHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN--V 86 (111)
T ss_dssp CSSCEEE---EEECTTTCCHHHHHSTTTTTT-TSC-EEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT--E
T ss_pred CCCEEEE---ECCCCCCCHHHHHHHHHHhhc-cCC-EEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC--C
Confidence 4678988 7877 9999999 99986 999 555555433132 35568999999999987777653221 2
Q ss_pred EEcCceeEEEeccCC
Q 038714 305 SINGKHKIIQILKNN 319 (319)
Q Consensus 305 ~IngkhiWarky~pk 319 (319)
.|+|+.+-+....||
T Consensus 87 ~~~gr~l~V~~a~~k 101 (111)
T 2cpi_A 87 VVDGRTLKASLGTTK 101 (111)
T ss_dssp EETTEEEEEESCCCC
T ss_pred EECCEEEEEEecccc
Confidence 589999987766554
No 144
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.75 E-value=4.2e-05 Score=60.25 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=51.2
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG 297 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~ 297 (319)
...+.+++|| +|.| ++++||+++|.+ ||. |+.+.+-.. ..++...||+|.|.+.+....++.
T Consensus 21 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~~~i~~~-~~g~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 21 QEQDPTNLYI---SNLPLSMDEQELENMLKP-FGQ-VISTRILRD-SSGTSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCCCTTEEEE---ESCCTTCCHHHHHHTTTT-TSC-EEEEEEEEC-SSSCEEEEEEEEESCHHHHHHHHH
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEEC-CCCCcceEEEEEECCHHHHHHHHH
Confidence 3456789988 7877 999999999986 999 777777666 478888999999999998776654
No 145
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.92 E-value=4.3e-06 Score=66.48 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=60.2
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeE-------EEeeecCCCCCCCceEEEEecchhhHHHHhCCCCe
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEA-------INMQEVASSTEQPLFARLVMDSASFMDVVLGGKSK 301 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~-------v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~ 301 (319)
..+.+++|| +|.| ++++||+++|.+ ||.+.+. |.+...+.+++...||+|.|.+.+....++...+.
T Consensus 4 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 4 NSDNNTIFV---QGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 346689988 7887 999999999996 9985441 44443325688899999999999998877763222
Q ss_pred eeEEEcCceeEEEeccC
Q 038714 302 AKFSINGKHKIIQILKN 318 (319)
Q Consensus 302 ~kf~IngkhiWarky~p 318 (319)
..|+|+.+-++...|
T Consensus 80 --~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 80 --KEFSGNPIKVSFATR 94 (116)
Confidence 357898886665544
No 146
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.71 E-value=6.8e-05 Score=64.96 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=60.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.++..+|+|| +|.| ++++||+++|.+ ||+ |+.|.+... ..++...||+|.|.+.+....++...+. ..|+
T Consensus 84 ~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~-I~~v~i~~d-~~g~~kG~afV~F~~~~~A~~Ai~~lng--~~l~ 155 (177)
T 2f3j_A 84 GVETGAKLLV---SNLDFGVSDADIQELFAE-FGT-LKKAAVDYD-RSGRSLGTADVHFERRADALKAMKQYKG--VPLD 155 (177)
T ss_dssp SCTTCEEEEE---ECCCSCCCHHHHHHHHHH-TSC-CSEEEECCC-TTSSCSCCEEEEESCHHHHHHHHHHSTT--CBCS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEC-CCCCEeeEEEEEeCCHHHHHHHHHHhCC--CEEC
Confidence 4556789988 6888 999999999997 998 677777665 4788899999999999987777652221 1578
Q ss_pred CceeEEEe
Q 038714 308 GKHKIIQI 315 (319)
Q Consensus 308 gkhiWark 315 (319)
|+.+-++.
T Consensus 156 Gr~l~V~~ 163 (177)
T 2f3j_A 156 GRPMDIQL 163 (177)
T ss_dssp SSBCEEEE
T ss_pred CEEEEEEE
Confidence 88876554
No 147
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.70 E-value=0.00014 Score=59.78 Aligned_cols=78 Identities=17% Similarity=0.402 Sum_probs=59.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
+.+.+++|| +|.| ++++||+++|.+ ||+ |+.+.+...+..++...||.|.|.+.+.....+..-+. ..++|
T Consensus 91 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g 163 (172)
T 2g4b_A 91 LPGAHKLFI---GGLPNYLNDDQVKELLTS-FGP-LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG--MQLGD 163 (172)
T ss_dssp CTTTTCEEE---ECCCTTCCHHHHHHHHHT-TSC-EEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT--CEETT
T ss_pred CCCCCEEEE---EcCCCcCCHHHHHHHHHh-cCC-ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC--CEECC
Confidence 455789988 6877 999999999996 999 67777665435788899999999999987766542110 25789
Q ss_pred ceeEEEe
Q 038714 309 KHKIIQI 315 (319)
Q Consensus 309 khiWark 315 (319)
+.+-++.
T Consensus 164 ~~l~V~~ 170 (172)
T 2g4b_A 164 KKLLVQR 170 (172)
T ss_dssp EECEEEE
T ss_pred eEEEEEe
Confidence 8886653
No 148
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.70 E-value=5.7e-05 Score=67.97 Aligned_cols=77 Identities=9% Similarity=0.214 Sum_probs=57.4
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcC--CceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFG--ECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG--dcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
+.++||| ++.| ++++||+++|.+ || .+++...+.+. .+++...||+|.|.+.+....+|...+. ..|+|
T Consensus 67 ~~~~lfV---gnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~-~tg~skGfaFV~f~~~~~a~~Ai~~lng--~~~~G 139 (229)
T 3q2s_C 67 KRIALYI---GNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENR-ANGQSKGFALVGVGSEASSKKLMDLLPK--RELHG 139 (229)
T ss_dssp --CEEEE---ESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECT-TTCCEEEEEEEEESCTTHHHHHHTTSTT--SCBTT
T ss_pred CccEEEE---eCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecC-CCCccceEEEEEECCHHHHHHHHHHcCC--CeECC
Confidence 5667877 7877 999999999975 99 74444444444 6899999999999999998888763221 14789
Q ss_pred ceeEEEec
Q 038714 309 KHKIIQIL 316 (319)
Q Consensus 309 khiWarky 316 (319)
+.|-++..
T Consensus 140 r~l~V~~a 147 (229)
T 3q2s_C 140 QNPVVTPV 147 (229)
T ss_dssp BCCEEEEC
T ss_pred EEeEEEEC
Confidence 98877654
No 149
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.69 E-value=5.1e-05 Score=57.85 Aligned_cols=74 Identities=9% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEE--EeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeee
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAI--NMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAK 303 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v--~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~k 303 (319)
+...+++|| +|.| ++++||+++|.+ ||. |+.+ .+.+. ..+. |+|.|.+.+.....+ +|.
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~~~~i~~~~-~~~~----afV~f~~~~~a~~Ai~~l~g~---- 77 (96)
T 2e44_A 12 RQRIRKLQI---RNIPPHLQWEVLDSLLVQ-YGV-VESCEQVNTDS-ETAV----VNVTYSSKDQARQALDKLNGF---- 77 (96)
T ss_dssp CCSCCCEEE---EEECSSSCHHHHHHHHHH-HSC-EEEEEEECCSS-SSEE----EEEEESSHHHHHHHHHHHTTC----
T ss_pred CCCCCEEEE---EcCCCCCCHHHHHHHHHh-cCC-eEEEEEeecCC-CCCE----EEEEECCHHHHHHHHHHhCCC----
Confidence 445789988 7877 999999999996 999 5555 34333 3333 999999999876654 453
Q ss_pred EEEcCceeEEEeccCC
Q 038714 304 FSINGKHKIIQILKNN 319 (319)
Q Consensus 304 f~IngkhiWarky~pk 319 (319)
.|+|+.+-++...|+
T Consensus 78 -~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 78 -QLENFTLKVAYIPDE 92 (96)
T ss_dssp -BCSSCBCEEEECCCC
T ss_pred -EECCcEEEEEEcCcc
Confidence 478999988877764
No 150
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.69 E-value=3e-05 Score=64.10 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=56.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
.+..++||| ++.| ++|+||+++|.+ ||. |+.|.|-.. ..||+|.|.+.+.....+.....-...|+|
T Consensus 28 ~~ps~~LfV---gNLp~~vte~dL~~lF~~-fG~-V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 28 GVPSRVIHI---RKLPIDVTEGEVISLGLP-FGK-VTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SSCCSEEEE---ESCCTTCCHHHHHHHHTT-TSC-CCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 445689998 7888 999999999986 999 555555332 589999999988877666522211246889
Q ss_pred ceeEEEeccC
Q 038714 309 KHKIIQILKN 318 (319)
Q Consensus 309 khiWarky~p 318 (319)
|.+-+....+
T Consensus 97 r~l~V~~a~~ 106 (119)
T 2ad9_A 97 QPIYIQFSNH 106 (119)
T ss_dssp BCCEEEECSS
T ss_pred eEEEEEEccC
Confidence 9887765443
No 151
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.68 E-value=0.00021 Score=56.09 Aligned_cols=69 Identities=10% Similarity=0.306 Sum_probs=54.4
Q ss_pred CCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 231 PPDERTIFLTFSKGYP---ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
....+++|| +|.| ++++||+++|.+ ||. |+.|.| ...||+|.|.+.+....++ +|.
T Consensus 24 ~~~~~~l~V---~nl~~~~~t~~~l~~~F~~-~G~-v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~----- 85 (110)
T 1wf1_A 24 KSINSRVFI---GNLNTALVKKSDVETIFSK-YGR-VAGCSV--------HKGYAFVQYSNERHARAAVLGENGR----- 85 (110)
T ss_dssp TTCSSEEEE---CSCCCSSCCHHHHHHHHGG-GSC-CSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTC-----
T ss_pred CCCCcEEEE---eCCCcccCCHHHHHHHHHh-CCC-eEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCC-----
Confidence 445689998 7877 899999999986 998 667777 2479999999999877766 452
Q ss_pred EEcCceeEEEecc
Q 038714 305 SINGKHKIIQILK 317 (319)
Q Consensus 305 ~IngkhiWarky~ 317 (319)
.|+|+.+-++...
T Consensus 86 ~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 86 VLAGQTLDINMAG 98 (110)
T ss_dssp EETTEECCEEESC
T ss_pred EECCeEEEEEECC
Confidence 5789998766544
No 152
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.66 E-value=0.0003 Score=54.57 Aligned_cols=75 Identities=17% Similarity=0.317 Sum_probs=55.7
Q ss_pred cCCCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEE
Q 038714 229 TVPPDERTIFLTFSKGYP---ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFS 305 (319)
Q Consensus 229 ~~~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~ 305 (319)
..+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.|- ..||+|.|.+.+....++...+. ..
T Consensus 17 ~~~~~~~~l~V---~nLp~~~~t~~~L~~~F~~-~G~-v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g--~~ 81 (97)
T 2xnq_A 17 RGSHMKSRLFI---GNLPLKNVSKEDLFRIFSP-YGH-IMQINIK--------NAFGFIQFDNPQSVRDAIEXESQ--EM 81 (97)
T ss_dssp --CCTTCEEEE---ESCCSSCCCHHHHHHHHGG-GSC-EEEEEEC--------SSEEEEEESSHHHHHHHHHHHTT--SE
T ss_pred CCCCCCCEEEE---eCCCcccCCHHHHHHHHHh-cCC-EEEEEEe--------CCEEEEEECCHHHHHHHHHHcCC--CE
Confidence 35667899999 6766 699999999987 999 7777772 57999999999987776652111 25
Q ss_pred EcCceeEEEeccC
Q 038714 306 INGKHKIIQILKN 318 (319)
Q Consensus 306 IngkhiWarky~p 318 (319)
++|+.+-++...+
T Consensus 82 ~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 82 NFGKKLILEVSSS 94 (97)
T ss_dssp ETTEECEEEECCC
T ss_pred ECCEEEEEEecCC
Confidence 7899887765443
No 153
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.66 E-value=8.6e-05 Score=60.97 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=47.3
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCC--CCCceEEEEecchhhHHHHh
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASST--EQPLFARLVMDSASFMDVVL 296 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~--~qplfariVf~s~~~v~~vL 296 (319)
|.||+|| +|.| ++++||+++|.+ ||+ |+.|.+-....++ +...||.|.|.+++.....+
T Consensus 2 ~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 64 (175)
T 3nmr_A 2 DAIKMFV---GQVPRTWSEKDLRELFEQ-YGA-VYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64 (175)
T ss_dssp CCEEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHH
T ss_pred CceEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHH
Confidence 6789998 7888 999999999986 999 5566554432444 78999999999998876664
No 154
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.65 E-value=9.2e-05 Score=61.27 Aligned_cols=75 Identities=12% Similarity=0.232 Sum_probs=57.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+...+++|| +|.| ++++||+++|.+ ||+ |+.|.+-.. ...||+|.|.+.+.....+ +|.
T Consensus 69 ~~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~-i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~----- 133 (150)
T 2i2y_A 69 SCPLDCKVYV---GNLGNNGNKTELERAFGY-YGP-LRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGR----- 133 (150)
T ss_dssp SSTTSCEEEE---ESCCSCCSCHHHHHHHHH-HSC-EEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSS-----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-hCC-EEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCC-----
Confidence 4566799998 7877 999999999997 999 566666432 4679999999999877665 453
Q ss_pred EEcCceeEEEeccCC
Q 038714 305 SINGKHKIIQILKNN 319 (319)
Q Consensus 305 ~IngkhiWarky~pk 319 (319)
.|+|+.+-++...|+
T Consensus 134 ~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 134 TLCGCRVRVELSNGE 148 (150)
T ss_dssp CSSSSCCEEEECCCC
T ss_pred EECCeEEEEEEcCCC
Confidence 368999877765553
No 155
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00015 Score=58.87 Aligned_cols=75 Identities=13% Similarity=0.228 Sum_probs=58.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf 304 (319)
...+.+++|| +|.| ++++||+++|.+ ||. |+.+.+......+.+..||.|.|.+.+....++. |.
T Consensus 83 ~~~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----- 152 (166)
T 3md3_A 83 SSDDTFNLFV---GDLNVNVDDETLRNAFKD-FPS-YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ----- 152 (166)
T ss_dssp CCTTCEEEEE---ESCCTTCCHHHHHHHHTT-STT-EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-----
T ss_pred CCCCCceEEE---CCCCCCCCHHHHHHHHhc-cCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-----
Confidence 3556788888 6877 999999999965 999 5555555432678889999999999999777665 53
Q ss_pred EEcCceeEEE
Q 038714 305 SINGKHKIIQ 314 (319)
Q Consensus 305 ~IngkhiWar 314 (319)
.|+|+.+-+.
T Consensus 153 ~~~g~~i~v~ 162 (166)
T 3md3_A 153 DLNGRPLRIN 162 (166)
T ss_dssp EETTEECEEE
T ss_pred ccCCcEEEEE
Confidence 4799988554
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.61 E-value=0.00014 Score=63.37 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=57.9
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEEEc
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFSIN 307 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~In 307 (319)
..+++|| +|.| ++++||+++|.. ||++++.-.+.+. +....||+|.|.+.+....++ +|. .|+
T Consensus 102 ~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d~---~~~~g~~fV~f~~~~~a~~Ai~~lng~-----~~~ 169 (213)
T 4f02_A 102 GVGNIFI---KNLDKSIDNKALYDTFSA-FGNILSCKVVCDE---NGSKGYGFVHFETQEAAERAIEKMNGM-----LLN 169 (213)
T ss_dssp CTTEEEE---ESCCTTCCHHHHHHHHGG-GSCEEEEEEEEET---TEEEEEEEEEESSHHHHHHHHHHHTTC-----EET
T ss_pred ccccceE---CCcccccHHHHHHHHHhh-cCCeEEEEeeccC---CCCceEEEEEeCCHHHHHHHHHHhCCC-----EEC
Confidence 4468887 7877 999999999986 9995554444443 346799999999999877765 453 589
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-+..+.||
T Consensus 170 g~~i~V~~a~~~ 181 (213)
T 4f02_A 170 DRKVFVGRFKSR 181 (213)
T ss_dssp TEECEEEECCCH
T ss_pred CEEEEEEEcCCC
Confidence 999988887663
No 157
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.60 E-value=0.00011 Score=62.80 Aligned_cols=77 Identities=10% Similarity=0.194 Sum_probs=59.6
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeEEE
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKFSI 306 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf~I 306 (319)
...+++|| +|.| ++++||+++|.+ ||. |+.|.+-.....++...||.|.|.+.+....++. |. .|
T Consensus 123 ~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~-----~~ 192 (216)
T 2qfj_A 123 RAFNRIYV---ASVHQDLSDDDIKSVFEA-FGK-IKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF-----DL 192 (216)
T ss_dssp TTSCEEEE---ECCCTTCCHHHHHHHHTT-SSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----BC
T ss_pred CCCcEEEE---eCCCCcCCHHHHHHHHhc-cCC-eeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC-----Ee
Confidence 45579988 7877 999999999986 998 6666665543678889999999999988766654 53 37
Q ss_pred cCceeEEEeccC
Q 038714 307 NGKHKIIQILKN 318 (319)
Q Consensus 307 ngkhiWarky~p 318 (319)
+|+.+=++...|
T Consensus 193 ~g~~i~V~~a~~ 204 (216)
T 2qfj_A 193 GGQYLRVGKAVT 204 (216)
T ss_dssp SSSBCEEEECSS
T ss_pred CCcEEEEEEecC
Confidence 999987766554
No 158
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=6.6e-05 Score=60.17 Aligned_cols=73 Identities=10% Similarity=0.051 Sum_probs=53.4
Q ss_pred CCCCceEEEEccCCCcC---CHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 231 PPDERTIFLTFSKGYPI---SENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~Pv---se~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
++..++||| ++.|- +|+||+++|.. ||. |..|.|-.. +.||+|.|.+++.....+...+.-...|+
T Consensus 12 ~~p~~~l~V---~nLp~~~~te~dL~~lF~~-fG~-V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 12 VETRRVVHI---MDFQRGKNLRYQLLQLVEP-FGV-ISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCEEEE---ESCCCSSSHHHHHHTTTGG-GSC-EEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCEEEE---eCCCCCcCCHHHHHHHHHh-cCC-EEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 456789998 78775 99999999996 999 556666332 36999999998887666653221234689
Q ss_pred CceeEEE
Q 038714 308 GKHKIIQ 314 (319)
Q Consensus 308 gkhiWar 314 (319)
||.+.+.
T Consensus 81 Gr~l~V~ 87 (102)
T 1x4d_A 81 GKPVRVH 87 (102)
T ss_dssp TEECEEE
T ss_pred CcEEEEE
Confidence 9998554
No 159
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.55 E-value=9.2e-05 Score=57.06 Aligned_cols=71 Identities=13% Similarity=0.256 Sum_probs=52.3
Q ss_pred eEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCceeEE
Q 038714 236 TIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGKHKII 313 (319)
Q Consensus 236 t~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~IngkhiWa 313 (319)
|+|| +|.| ++++||+++|.+ ||. |+.|.+... ...||.|.|.+.+....++..-+.. .++|+.+-+
T Consensus 2 ~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V 69 (101)
T 2hvz_A 2 KVYV---GNLGTGAGKGELERAFSY-YGP-LRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGK--VICGSRVRV 69 (101)
T ss_dssp EEEE---ECCCSSCSHHHHHHHHHH-HCC-CSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHS--CSSSCCCEE
T ss_pred EEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCC--eECCcEEEE
Confidence 6776 6877 999999999986 998 667776442 6779999999999877776521111 378888866
Q ss_pred EeccC
Q 038714 314 QILKN 318 (319)
Q Consensus 314 rky~p 318 (319)
+...|
T Consensus 70 ~~a~~ 74 (101)
T 2hvz_A 70 ELSTG 74 (101)
T ss_dssp EESSS
T ss_pred EEccC
Confidence 65443
No 160
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.55 E-value=0.00022 Score=64.05 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=55.6
Q ss_pred CCCCceEEEEccCCCc--CCHHHHH----HHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIR----DFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKF 304 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~----~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf 304 (319)
.+..||+|| +|.| ++++||+ ++|.+ ||+ |+.|.+-+ .++...||+|.|.+.+.....+..-+. .
T Consensus 6 ~~~~~~l~V---~nlp~~~~~~~l~~~L~~~F~~-~G~-i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g--~ 75 (282)
T 3pgw_A 6 TRPNHTIYI---NNLNEKIKKDELKKSLYAIFSQ-FGQ-ILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG--F 75 (282)
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHHHHhc-cCC-eEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcC--C
Confidence 455789998 8888 9999977 89975 998 45555544 467889999999999998777642111 3
Q ss_pred EEcCceeEEEe
Q 038714 305 SINGKHKIIQI 315 (319)
Q Consensus 305 ~IngkhiWark 315 (319)
.|+|+.+-++.
T Consensus 76 ~~~g~~l~v~~ 86 (282)
T 3pgw_A 76 PFYDKPMRIQY 86 (282)
T ss_pred eeCCcEEEEEE
Confidence 67888876543
No 161
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.55 E-value=0.00013 Score=59.94 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=56.1
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCcee-------EEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCe
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFE-------AINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSK 301 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie-------~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~ 301 (319)
....+++|| +|.| +++++|+++|.. ||.+.. .+.+.+ .++...||+|.|.+.+.....+...+.
T Consensus 42 ~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~~---~g~~~g~afV~f~~~~~A~~Ai~~lng 114 (143)
T 3egn_A 42 GEPNCRIYV---KNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLMK---EGRMKGQAFIGLPNEKAAAKALKEANG 114 (143)
T ss_dssp CSCCSEEEE---EEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEEE---ETTTEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEecc---CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 455689988 7877 999999999986 997544 244433 378899999999999987766542111
Q ss_pred eeEEEcCceeEEEec
Q 038714 302 AKFSINGKHKIIQIL 316 (319)
Q Consensus 302 ~kf~IngkhiWarky 316 (319)
..|+|+.+-+...
T Consensus 115 --~~~~g~~l~V~~a 127 (143)
T 3egn_A 115 --YVLFGKPMVVQFA 127 (143)
T ss_dssp --BEETTEECEEEEC
T ss_pred --CEeCCcEEEEEEC
Confidence 2478998866544
No 162
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.54 E-value=0.00041 Score=57.34 Aligned_cols=70 Identities=11% Similarity=0.211 Sum_probs=51.8
Q ss_pred CCCceEEEEccCCCc--CCHHHHH----HHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCee
Q 038714 232 PDERTIFLTFSKGYP--ISENEIR----DFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKA 302 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~----~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~ 302 (319)
+..+|+|| +|.| +++++++ ++|.+ ||++ +.|.+.. .++..+||+|.|.+.+.....+ +|.
T Consensus 27 ~p~~~LfV---~nL~~~~~e~~L~~~L~~~F~~-~G~I-~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~--- 95 (127)
T 2a3j_A 27 EPSQVVLI---TNINPEVPKEKLQALLYALASS-QGDI-LDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGY--- 95 (127)
T ss_dssp SCCSEEEE---ESCCTTSCHHHHHHHHHHHHHH-HSCE-EEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTC---
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHHHhcc-CCCe-EEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCC---
Confidence 34689998 7777 8999876 68986 9994 5566643 3677899999999988766554 564
Q ss_pred eEEEcCceeEEE
Q 038714 303 KFSINGKHKIIQ 314 (319)
Q Consensus 303 kf~IngkhiWar 314 (319)
.|.|+.+-+.
T Consensus 96 --~l~gr~l~V~ 105 (127)
T 2a3j_A 96 --PFQGNPLVIT 105 (127)
T ss_dssp --CCTTSCCEEE
T ss_pred --EeCCCEEEEE
Confidence 3678877544
No 163
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.53 E-value=0.0003 Score=63.38 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=62.1
Q ss_pred CCCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCceeEEEeeecCC-CCCCCceEEEEecchhhHHHHhCCCCeeeEE
Q 038714 230 VPPDERTIFLTFSKGYP---ISENEIRDFFIRKFGECFEAINMQEVAS-STEQPLFARLVMDSASFMDVVLGGKSKAKFS 305 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcie~v~mq~~~~-~~~qplfariVf~s~~~v~~vL~g~~~~kf~ 305 (319)
.....+++|| +|.| +++++|+++|.+ ||. |+.|.+-.... ++....||.|.|.+.+....++ .-+. ..
T Consensus 206 ~~~~~~~l~v---~nlp~~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g--~~ 277 (292)
T 2ghp_A 206 ATLEGREIMI---RNLSTELLDENLLRESFEG-FGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNR--SL 277 (292)
T ss_dssp -CCTTTEEEE---EEECTTTCCHHHHHHHHGG-GSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTT--EE
T ss_pred cCCCCceEEE---ECCCcccCCHHHHHHHHhc-cCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcC--CE
Confidence 3456689988 6777 899999999996 998 66677765412 3889999999999999987776 3222 25
Q ss_pred EcCceeEEEeccCC
Q 038714 306 INGKHKIIQILKNN 319 (319)
Q Consensus 306 IngkhiWarky~pk 319 (319)
|+|+.+-+....||
T Consensus 278 ~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 278 LGNREISVSLADKK 291 (292)
T ss_dssp ETTEEEEEEECCCC
T ss_pred ECCcEEEEEEecCC
Confidence 89999988877775
No 164
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.53 E-value=0.00019 Score=59.45 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=61.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.....+++|| +|.| ++++||+++|.+ ||+ |..+ . ..++...||.|.|.+.+.....+..-+. ..|+
T Consensus 95 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~g~-v~~~----~-~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 162 (175)
T 1fje_B 95 KVRAARTLLA---KNLSFNITEDELKEVFED-ALE-IRLV----S-QDGKSKGIAYIEFKSEADAEKNLEEKQG--AEID 162 (175)
T ss_dssp TTGGGGEEEE---ESCCSSCCHHHHHHHCTT-CSE-EEEE----C-SSSSCCSEEEEECSSHHHHHHHHHHHTE--EEET
T ss_pred ccccCCEEEE---eCCCCCCCHHHHHHHHHh-cCe-EEEe----c-CCCCCceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 3456789988 6877 999999999997 997 3444 2 5688899999999999998887763221 4789
Q ss_pred CceeEEEeccCC
Q 038714 308 GKHKIIQILKNN 319 (319)
Q Consensus 308 gkhiWarky~pk 319 (319)
|+.+-++...||
T Consensus 163 g~~i~v~~a~~k 174 (175)
T 1fje_B 163 GRSVSLYYTGEK 174 (175)
T ss_dssp TEEEEEEECSSC
T ss_pred CeEEEEEecCCC
Confidence 999988877765
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.52 E-value=0.00019 Score=59.04 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=54.2
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcC---C-------ceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCC
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFG---E-------CFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGK 299 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG---d-------cie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~ 299 (319)
++.|++|| +|.| ++++||+++|.+ || . -|..+.+ ++...||.|.|.+++.....+. .
T Consensus 2 r~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~~-~ 70 (172)
T 2g4b_A 2 GSARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMA-F 70 (172)
T ss_dssp CGGGEEEE---ESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHGG-G
T ss_pred CcccEEEE---cCCCcccCHHHHHHHHHH-HhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHHH-h
Confidence 35689999 7888 999999999997 84 2 3555554 3447899999999999888873 2
Q ss_pred CeeeEEEcCceeEEEec
Q 038714 300 SKAKFSINGKHKIIQIL 316 (319)
Q Consensus 300 ~~~kf~IngkhiWarky 316 (319)
+. ..++|+.+.++.-
T Consensus 71 ~~--~~~~g~~i~v~~~ 85 (172)
T 2g4b_A 71 DG--IIFQGQSLKIRRP 85 (172)
T ss_dssp TT--CEETTEECEEECC
T ss_pred CC--cEecCceeeecCC
Confidence 21 2579999877653
No 166
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.51 E-value=0.00035 Score=56.57 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=55.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.|....++|| +|.| ++++|++++|.+ ||.-|..+.+-. .+..+||+|.|.+.+..+..+..-+. ..|+
T Consensus 24 ~p~~~~~l~V---gnLp~~~te~dL~~~F~~-~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng--~~l~ 93 (111)
T 2jvr_A 24 LPAKRYRITM---KNLPEGCSWQDLKDLARE-NSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNN--IEFR 93 (111)
T ss_dssp -CCCCEEEEE---ECSSCCCCHHHHHHHHHH-HTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTT--EEET
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHH-hCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 3555678877 7888 999999999996 993366666632 34778999999999987766642111 2589
Q ss_pred CceeEEEec
Q 038714 308 GKHKIIQIL 316 (319)
Q Consensus 308 gkhiWarky 316 (319)
|+.+-++.-
T Consensus 94 Gr~i~V~~a 102 (111)
T 2jvr_A 94 GSVITVERD 102 (111)
T ss_dssp TEEEEEEES
T ss_pred CeEEEEEEC
Confidence 998876653
No 167
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.47 E-value=0.00022 Score=58.46 Aligned_cols=61 Identities=18% Similarity=0.306 Sum_probs=50.2
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG 297 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~ 297 (319)
+...+++|| +|.| ++++||+++|.+ ||+ |++|.+... ..++...||.|.|.+.+.....+.
T Consensus 92 ~~~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~-i~~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 92 AVEDRKLFI---GMISKKCTENDIRVMFSS-FGQ-IEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp CGGGSEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHH
T ss_pred cCCCCeEEE---cCCCCcCCHHHHHHHHHh-CCC-EEEEEEEEC-CCCCEEEEEEEEECCHHHHHHHHH
Confidence 346789988 7877 999999999985 999 777777665 568889999999999998776653
No 168
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.46 E-value=0.00015 Score=60.99 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=53.4
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcC---C-------ceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCC
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFG---E-------CFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKS 300 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG---d-------cie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~ 300 (319)
..||+|| +|.| ++++||+++|.+ || . -|..+.+ ++...||+|.|.+++.....|. .+
T Consensus 3 ~~~~l~V---~nLp~~~te~~l~~~F~~-~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~-l~ 71 (198)
T 2yh0_A 3 MARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMA-FD 71 (198)
T ss_dssp -CCEEEE---ESCCTTCCHHHHHHHHHH-HHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGG-GT
T ss_pred ceeEEEE---cCCCCCCCHHHHHHHHHH-HHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHH-hc
Confidence 4589999 7888 999999999997 85 2 2444444 4557899999999999888883 22
Q ss_pred eeeEEEcCceeEEEec
Q 038714 301 KAKFSINGKHKIIQIL 316 (319)
Q Consensus 301 ~~kf~IngkhiWarky 316 (319)
...|+|+.+.++..
T Consensus 72 --g~~~~g~~i~v~~~ 85 (198)
T 2yh0_A 72 --GIIFQGQSLKIRRP 85 (198)
T ss_dssp --TEEETTEEEEEECC
T ss_pred --CCEEcCceEEEeCC
Confidence 23589999877654
No 169
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.46 E-value=0.00034 Score=68.87 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=59.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcC
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSING 308 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ing 308 (319)
....+|||| +|.| +++++|+++|.. ||.++...+|.+. .++....||+|.|.+.+.+..+|...+- ..|+|
T Consensus 99 ~~~~~~lfV---~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d~-~tg~~kG~aFV~F~~~e~A~~Ai~~lng--~~i~g 171 (437)
T 3pgw_S 99 GDAFKTLFV---ARVNYDTTESKLRREFEV-YGPIKRIHMVYSK-RSGKPRGYAFIEYEHERDMHSAYKHADG--KKIDG 171 (437)
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCCeeEEEeeccC-CCCCccceEEEeeccHHHHHHHHHHcCC--CEECC
Confidence 445689988 7877 999999999997 9995444444444 6788999999999999998877743221 25789
Q ss_pred ceeEEEec
Q 038714 309 KHKIIQIL 316 (319)
Q Consensus 309 khiWarky 316 (319)
+.|-+..-
T Consensus 172 r~i~V~~a 179 (437)
T 3pgw_S 172 RRVLVDVE 179 (437)
T ss_pred EEEEEEEe
Confidence 88866543
No 170
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.44 E-value=0.00012 Score=59.88 Aligned_cols=73 Identities=10% Similarity=0.201 Sum_probs=55.5
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKFS 305 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf~ 305 (319)
+...+++|| +|.| ++++||+++|.+ ||+ |+.+.+......++...||.|.|.+.+.....+. |. .
T Consensus 86 ~~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-----~ 155 (168)
T 1b7f_A 86 SIKDTNLYV---TNLPRTITDDQLDTIFGK-YGS-IVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV-----I 155 (168)
T ss_dssp TTTTCEEEE---ESCCTTCCHHHHHHHHTS-SSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----C
T ss_pred cCCCCCEEE---eCCCCCCCHHHHHHhhhc-CCc-EEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC-----E
Confidence 345688988 6877 999999999985 998 6677766543578888999999999988777654 54 3
Q ss_pred EcC--ceeEE
Q 038714 306 ING--KHKII 313 (319)
Q Consensus 306 Ing--khiWa 313 (319)
++| +.+-+
T Consensus 156 ~~g~~~~l~V 165 (168)
T 1b7f_A 156 PEGGSQPLSV 165 (168)
T ss_dssp CTTCSSCCEE
T ss_pred ecCCCeEEEE
Confidence 555 65544
No 171
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.42 E-value=0.00047 Score=62.12 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=54.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
-+.+.||+|| +|.| ++++||+++|.+ ||. |+.|.|-.. . +....||.|.|.+.+.....|. .+ ...++
T Consensus 37 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~-~-~~~~g~afV~f~~~~~A~~A~~-~~--~~~~~ 106 (292)
T 2ghp_A 37 RNRELTTVLV---KNLPKSYNQNKVYKYFKH-CGP-IIHVDVADS-L-KKNFRFARIEFARYDGALAAIT-KT--HKVVG 106 (292)
T ss_dssp -----CEEEE---EEECTTCCHHHHHHHHGG-GSC-EEEEEEEEC-T-TSSSEEEEEEESSHHHHHHHHT-TT--TCEET
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEC-C-CCCcEEEEEEECCHHHHHHHHH-hC--CcEeC
Confidence 4667899999 7888 999999999997 998 556655443 2 2247999999999999888884 21 23678
Q ss_pred CceeEEEe
Q 038714 308 GKHKIIQI 315 (319)
Q Consensus 308 gkhiWark 315 (319)
|+.+.+..
T Consensus 107 g~~i~v~~ 114 (292)
T 2ghp_A 107 QNEIIVSH 114 (292)
T ss_dssp TEECEEEE
T ss_pred CcEEEEEE
Confidence 88887653
No 172
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.42 E-value=0.00018 Score=64.59 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCCceEEEEccCCCc--C-CHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEE
Q 038714 232 PDERTIFLTFSKGYP--I-SENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFS 305 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--v-se~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~ 305 (319)
...+++|| +|.| + ++++|+++|.. ||. |+.|.+... ..++...||.|.|.+.+....++ +|. .
T Consensus 182 ~~~~~l~v---~nlp~~~~~~~~l~~~f~~-~G~-i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~-----~ 250 (284)
T 3smz_A 182 LHSRCLCV---DRLPPGFNDVDALCRALSA-VHS-PTFCQLACG-QDGQLKGFAVLEYETAEMAEEAQQQADGL-----S 250 (284)
T ss_dssp TSCSEEEE---ECCCTTCCCHHHHHHHTCS-SSC-CSEEEEEEC-SSCCEEEEEEEECSSHHHHHHHHHHHTTC-----E
T ss_pred CCccEEEE---ecCCcccCCHHHHHHHhhC-CCC-eEEEEEEEC-CCCCcccEEEEEeCCHHHHHHHHHHhCCC-----c
Confidence 45688887 8888 5 89999999996 998 556655554 56888999999999999877664 453 4
Q ss_pred EcCceeEEEeccCC
Q 038714 306 INGKHKIIQILKNN 319 (319)
Q Consensus 306 IngkhiWarky~pk 319 (319)
|+|+.+-+....|+
T Consensus 251 ~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 251 LGGSHLRVSFCAPG 264 (284)
T ss_dssp ETTEECEEEECCSS
T ss_pred cCCeEEEEEEecCC
Confidence 69999988877664
No 173
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00039 Score=53.34 Aligned_cols=68 Identities=19% Similarity=0.401 Sum_probs=50.8
Q ss_pred CCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC---CCCeeeE
Q 038714 231 PPDERTIFLTFSKGYP---ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG---GKSKAKF 304 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~---g~~~~kf 304 (319)
.++.+++|| +|.| ++++||+++|.+ ||. |+.|.+. ..||.|.|.+.+....++. |.
T Consensus 7 ~~~~~~l~V---~nlp~~~~t~~~l~~~F~~-~G~-v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~----- 68 (96)
T 2kvi_A 7 IPPKSRLFI---GNLPLKNVSKEDLFRIFSP-YGH-IMQINIK--------NAFGFIQFDNPQSVRDAIECESQE----- 68 (96)
T ss_dssp --CCEEEEE---ESSTTSCCCHHHHHHHHTT-TCC-CCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCS-----
T ss_pred CCCCCEEEE---eCCCcccCCHHHHHHHHHh-cCC-EEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC-----
Confidence 456789998 6766 699999999997 999 6677772 4699999999988776654 53
Q ss_pred EEcCceeEEEec
Q 038714 305 SINGKHKIIQIL 316 (319)
Q Consensus 305 ~IngkhiWarky 316 (319)
.++|+.+-++..
T Consensus 69 ~~~g~~l~V~~a 80 (96)
T 2kvi_A 69 MNFGKKLILEVS 80 (96)
T ss_dssp SCBTTTBCEEEE
T ss_pred eeCCcEEEEEEc
Confidence 366887755443
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.35 E-value=0.0006 Score=61.13 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=51.2
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc-
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN- 307 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In- 307 (319)
.+..+|+|| +|.| ++++||+++|.+ ||+ |+.|.+-.. . ..||+|.|.+.+.....+..-+- ..|+
T Consensus 204 ~~~~~~l~v---~nl~~~~~~~~l~~~F~~-~G~-i~~v~~~~~-~----~g~afV~f~~~~~A~~A~~~l~g--~~~~~ 271 (282)
T 3pgw_A 204 NPPNHILFL---TNLPEETNELMLSMLFNQ-FPG-FKEVRLVPG-R----HDIAFVEFDNEVQAGAARDALQG--FKITQ 271 (282)
T ss_pred CCCCCEEEE---eCCCCcCCHHHHHHHHHh-cCC-eEEEEEecC-C----CcEEEEEeCCHHHHHHHHHHcCC--cEeCC
Confidence 445789988 7877 999999999986 999 666666443 1 46999999999987766542221 3566
Q ss_pred CceeE
Q 038714 308 GKHKI 312 (319)
Q Consensus 308 gkhiW 312 (319)
|+.+-
T Consensus 272 g~~l~ 276 (282)
T 3pgw_A 272 NNAMK 276 (282)
T ss_pred CCEEE
Confidence 88773
No 175
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.35 E-value=0.00025 Score=56.43 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=49.8
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHH---hCCCCeeeEEE
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVV---LGGKSKAKFSI 306 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~v---L~g~~~~kf~I 306 (319)
.+.+++|| ++.| ++++||+++|.+ ||. |++|.|-. ...||+|.|.+.+..... |+|.. +
T Consensus 8 ~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~-i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~-----~ 71 (111)
T 1whx_A 8 RSKTVILA---KNLPAGTLAAEIQETFSR-FGS-LGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSK-----F 71 (111)
T ss_dssp EEEEEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCB-----S
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCE-----E
Confidence 35678888 6777 999999999996 999 67777743 456999999998886655 45643 6
Q ss_pred cCcee
Q 038714 307 NGKHK 311 (319)
Q Consensus 307 ngkhi 311 (319)
+|+++
T Consensus 72 ~g~~l 76 (111)
T 1whx_A 72 HHVPL 76 (111)
T ss_dssp SSSBC
T ss_pred CCeEE
Confidence 78887
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.34 E-value=0.00041 Score=62.29 Aligned_cols=79 Identities=9% Similarity=0.166 Sum_probs=61.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
....++++|| +|.| ++++||+++|.. ||. |+.+.+-..+..++..+||.|.|.+.+.....+ +|.
T Consensus 91 ~~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~----- 160 (284)
T 3smz_A 91 LQPTDALLCV---ANLPPSLTQQQFEELVRP-FGS-LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK----- 160 (284)
T ss_dssp ECCCSCEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----
T ss_pred ecCCCCEEEE---cCCCCcCCHHHHHHHHHh-cCC-eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC-----
Confidence 3556688988 7877 999999999987 999 666654433267889999999999999977776 452
Q ss_pred EEcCceeEEEeccC
Q 038714 305 SINGKHKIIQILKN 318 (319)
Q Consensus 305 ~IngkhiWarky~p 318 (319)
.|+|+.+-++...|
T Consensus 161 ~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 161 PLGPRTLYVHWTDA 174 (284)
T ss_dssp EETTEECEEEECCG
T ss_pred EeCCcEEEEEECCC
Confidence 57999987765543
No 177
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.29 E-value=9.8e-05 Score=60.39 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=51.6
Q ss_pred CCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEc
Q 038714 231 PPDERTIFLTFSKGYP---ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSIN 307 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~In 307 (319)
.+..+++|| ++.| ++++||+++|.+ ||. |..|.|-+ ...||+|.|.+.+.....+...+.-...|+
T Consensus 22 ~~p~~~l~V---~NLp~~~~te~~L~~lF~~-fG~-V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 22 QELGRVIHL---SNLPHSGYSDSAVLKLAEP-YGK-IKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp SCCCCEEEE---ESCCCSSCCSHHHHTTTTT-TSC-CSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCEEEE---eCCCCccCCHHHHHHHHHh-cCC-EEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 344789998 6766 689999999986 999 55666632 358999999998876555542111123578
Q ss_pred CceeEEEe
Q 038714 308 GKHKIIQI 315 (319)
Q Consensus 308 gkhiWark 315 (319)
||.+.+..
T Consensus 91 Gr~l~V~~ 98 (112)
T 1x4f_A 91 GRCVKVDL 98 (112)
T ss_dssp SSCCEEEE
T ss_pred CEEEEEEE
Confidence 88885543
No 178
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.26 E-value=0.00048 Score=60.64 Aligned_cols=72 Identities=11% Similarity=0.216 Sum_probs=55.8
Q ss_pred CCCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeee
Q 038714 230 VPPDERTIFLTFSKGYP---ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAK 303 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~k 303 (319)
.+++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-.. . ..||.|.|.+.+.....+ +|.
T Consensus 30 ~~~~~~~l~V---~nLp~~~~te~~L~~~F~~-~G~-i~~v~i~~~-~----~g~afV~F~~~~~A~~Ai~~l~g~---- 95 (229)
T 2adc_A 30 AGAGNSVLLV---SNLNPERVTPQSLFILFGV-YGD-VQRVKILFN-K----KENALVQMADGNQAQLAMSHLNGH---- 95 (229)
T ss_dssp GCCCCSEEEE---ESCCTTTCCHHHHHHHHHH-HTC-EEEEEECCT-T----SCCEEEEESCHHHHHHHHHHHTTC----
T ss_pred CCCCCCEEEE---eCCCcccCCHHHHHHHHHh-CCC-eEEEEEEEC-C----CCEEEEEECCHHHHHHHHHHhCCC----
Confidence 4567899999 6876 699999999986 999 777777553 1 679999999999977765 453
Q ss_pred EEEcCceeEEEec
Q 038714 304 FSINGKHKIIQIL 316 (319)
Q Consensus 304 f~IngkhiWarky 316 (319)
.++|+.+-+...
T Consensus 96 -~~~g~~l~v~~a 107 (229)
T 2adc_A 96 -KLHGKPIRITLS 107 (229)
T ss_dssp -BCSSSBCEEECC
T ss_pred -eECCeEEEEEEe
Confidence 468888876543
No 179
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.00071 Score=53.59 Aligned_cols=76 Identities=14% Similarity=0.265 Sum_probs=54.8
Q ss_pred CCCCCceEEEEccCCC--cC-----------CHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh
Q 038714 230 VPPDERTIFLTFSKGY--PI-----------SENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL 296 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~--Pv-----------se~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL 296 (319)
-|...||++|. +. |- .++||+++|.+ ||. |+.|.|-+. ...+||+|.|.+.+.....+
T Consensus 11 ~~~~s~~l~l~---Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~-v~~v~i~~~----~~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 11 RMRHERVVIIK---NMFHPMDFEDDPLVLNEIREDLRVECSK-FGQ-IRKLLLFDR----HPDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp CCCSCCEEEEE---SSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSC-CSEEEEETT----CTTCEEEEECSCHHHHHHHH
T ss_pred CCCCceEEEEE---cCCCHHHhccCHHHHHHHHHHHHHHHHc-cCC-EeEEEEecC----CCCEEEEEEECCHHHHHHHH
Confidence 45567898883 32 21 26899999985 998 556677332 37899999999988866554
Q ss_pred ---CCCCeeeEEEcCceeEEEeccCC
Q 038714 297 ---GGKSKAKFSINGKHKIIQILKNN 319 (319)
Q Consensus 297 ---~g~~~~kf~IngkhiWarky~pk 319 (319)
+|. .++||.+-+..+.|+
T Consensus 82 ~~lng~-----~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 82 QTLDGR-----WFGGRQITAQAWDGT 102 (112)
T ss_dssp HHSTTC-----EETTEECEEEECCSC
T ss_pred HHcCCC-----EECCcEEEEEEeCCC
Confidence 553 579999988877664
No 180
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.22 E-value=0.00037 Score=62.72 Aligned_cols=80 Identities=10% Similarity=0.080 Sum_probs=57.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCC--CeeeEEE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGK--SKAKFSI 306 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~--~~~kf~I 306 (319)
..+.+++|| +|.| +++++|+++|.. ||+ |+.|.+-.. ..++...||+|.|.+.+....++..- ....+..
T Consensus 93 a~~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~-i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 93 ATHGAALTV---KNLSPVVSNELLEQAFSQ-FGP-VEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp CCCSSEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred cccCCcccc---cCCCCCCCHHHHHHHHHh-cCC-eEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 445678887 6777 999999999975 998 556665554 57888999999999999877776532 2222334
Q ss_pred cCceeEEEec
Q 038714 307 NGKHKIIQIL 316 (319)
Q Consensus 307 ngkhiWarky 316 (319)
.|+.+.+...
T Consensus 167 ~~r~i~v~~~ 176 (261)
T 3sde_A 167 TPRPVIVEPM 176 (261)
T ss_dssp SCCBCEEEEC
T ss_pred CCceEEEeec
Confidence 4777766544
No 181
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.21 E-value=0.00087 Score=54.30 Aligned_cols=69 Identities=12% Similarity=0.284 Sum_probs=53.0
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEEE
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFSI 306 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~I 306 (319)
...+++|| +|.| ++++||+++|.+ ||. |+.+.+...+..++...||.|.|.+.+.....+ +|. .+
T Consensus 86 ~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-----~~ 155 (167)
T 1fxl_A 86 IRDANLYV---SGLPKTMTQKELEQLFSQ-YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-----KP 155 (167)
T ss_dssp GTTCEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----CC
T ss_pred CCCCcEEE---CCCCCcCCHHHHHHHHHh-cCC-EeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-----cc
Confidence 35578888 6877 999999999996 998 556666544257888999999999999877664 564 36
Q ss_pred cCce
Q 038714 307 NGKH 310 (319)
Q Consensus 307 ngkh 310 (319)
+|+.
T Consensus 156 ~g~~ 159 (167)
T 1fxl_A 156 SGAT 159 (167)
T ss_dssp TTCS
T ss_pred CCCc
Confidence 7754
No 182
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.05 E-value=0.00069 Score=51.10 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=52.1
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCCCeeeEEEcCc
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGKSKAKFSINGK 309 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~~~~kf~Ingk 309 (319)
...+++|| +|.| ++++|++++|.+ | + |+.+.+. +...||+|.|.+.+.....+...+. ..++|+
T Consensus 3 ~~~~~l~V---~nLp~~~t~~~l~~~F~~-~-~-v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~ 68 (88)
T 1wg1_A 3 SGSSGILV---KNLPQDSNCQEVHDLLKD-Y-D-LKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQ--YSFRGK 68 (88)
T ss_dssp CCCCCEEE---ESCCSSCCHHHHHHHTCS-S-C-CCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTT--EEETTE
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHhh-C-C-eEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCC--CeECCc
Confidence 35689988 8888 999999999997 6 5 6667662 4567999999999887776552221 257888
Q ss_pred eeEEEe
Q 038714 310 HKIIQI 315 (319)
Q Consensus 310 hiWark 315 (319)
.+-++.
T Consensus 69 ~l~V~~ 74 (88)
T 1wg1_A 69 DLIVQL 74 (88)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 876543
No 183
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.03 E-value=0.0014 Score=58.88 Aligned_cols=71 Identities=17% Similarity=0.389 Sum_probs=54.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 230 VPPDERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 230 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+.+.+|+|| +|.| +|+++|+++|.. ||. |..|.|-. ...||.|.|.+.+.....+ +|.
T Consensus 18 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~----- 81 (261)
T 3sde_A 18 TYTQRCRLFV---GNLPTDITEEDFKRLFER-YGE-PSEVFINR------DRGFGFIRLESRTLAEIAKAELDGT----- 81 (261)
T ss_dssp SSCGGGEEEE---ESCCTTCCHHHHHHHTGG-GCC-CSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-EEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCc-----
Confidence 4567789999 7887 999999999975 999 66676632 3589999999999987765 453
Q ss_pred EEcCceeEEEec
Q 038714 305 SINGKHKIIQIL 316 (319)
Q Consensus 305 ~IngkhiWarky 316 (319)
.|+|+.+-++..
T Consensus 82 ~i~g~~l~v~~a 93 (261)
T 3sde_A 82 ILKSRPLRIRFA 93 (261)
T ss_dssp EETTEECEEEEC
T ss_pred EECCceeEeeec
Confidence 468887766543
No 184
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.98 E-value=0.00078 Score=53.73 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=44.9
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEEEc
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFSIN 307 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~In 307 (319)
...++|| .|.| ++++||+++|.+ ||+ |+.|.|... .||+|.|.+.+.....+ +|. .|+
T Consensus 15 ~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~-----~~~ 77 (115)
T 3beg_B 15 SENRVVV---SGLPPSGSWQDLKDHMRE-AGD-VCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT-----KFR 77 (115)
T ss_dssp --CCEEE---EECCSSCCTTHHHHHHGG-GSC-EEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC-----BCC
T ss_pred CCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC-----EEC
Confidence 4567777 7877 999999999986 998 666666331 89999999988866654 453 366
Q ss_pred Cce
Q 038714 308 GKH 310 (319)
Q Consensus 308 gkh 310 (319)
|+.
T Consensus 78 gr~ 80 (115)
T 3beg_B 78 SHE 80 (115)
T ss_dssp CTT
T ss_pred CcE
Confidence 765
No 185
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.94 E-value=0.0008 Score=57.04 Aligned_cols=68 Identities=12% Similarity=0.245 Sum_probs=52.8
Q ss_pred CCceEEEEccCCCc---CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeEEE
Q 038714 233 DERTIFLTFSKGYP---ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKFSI 306 (319)
Q Consensus 233 d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf~I 306 (319)
+.+|+|| +|.| +++++|+++|.+ ||+ |+.|.+... . ..||.|.|.+++.....+ +|. .+
T Consensus 2 ~~~~l~v---~nlp~~~~~~~~l~~~F~~-~G~-i~~v~i~~~-~----~g~afV~f~~~~~a~~A~~~l~~~-----~~ 66 (198)
T 1qm9_A 2 GNSVLLV---SNLNPERVTPQSLFILFGV-YGD-VQRVKILFN-K----KENALVQMADGNQAQLAMSHLNGH-----KL 66 (198)
T ss_dssp CCCEEEE---ECCCSSSCCHHHHHHHHHT-TCC-CSEEECSTT-C----SSCCEEECTTTHHHHHHHHHHTTC-----CC
T ss_pred CCcEEEE---eCCCcccCCHHHHHHHHHh-cCC-EEEEEEEeC-C----CCEEEEEECCHHHHHHHHHHhCCC-----ee
Confidence 4689988 7876 599999999986 999 777777543 1 679999999999877765 453 36
Q ss_pred cCceeEEEe
Q 038714 307 NGKHKIIQI 315 (319)
Q Consensus 307 ngkhiWark 315 (319)
+|+.+-+..
T Consensus 67 ~g~~l~v~~ 75 (198)
T 1qm9_A 67 HGKPIRITL 75 (198)
T ss_dssp SSCCCEEEE
T ss_pred cCeEEEEEE
Confidence 888886653
No 186
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.0061 Score=48.41 Aligned_cols=58 Identities=10% Similarity=0.198 Sum_probs=44.8
Q ss_pred CceEEEEccCCC------cCCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCC
Q 038714 234 ERTIFLTFSKGY------PISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGG 298 (319)
Q Consensus 234 ~Rt~FvTFS~G~------Pvse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g 298 (319)
.+.+-|.+.... -+++++|+++|.+ ||+ |+.|.|- ++...||+|.|.+.+.....+..
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~-~G~-V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQK-YGE-VLNLVLS-----SKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHT-TSC-EEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHh-cCC-EEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh
Confidence 456668887543 3999999999986 999 5666663 36678999999999887777664
No 187
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0017 Score=55.36 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecc
Q 038714 247 ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDS 288 (319)
Q Consensus 247 vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s 288 (319)
+++++|++||.+ ||+..+.-.+.++ .++++.+||.|.|.+
T Consensus 18 tte~~Lk~~Fs~-fGeV~~~~li~Dp-~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 18 IQDISIKNYFKK-YGEISHFEAFNDP-NSALPLHVYLIKYAS 57 (136)
T ss_dssp CCHHHHHHHHHT-TSCCSEEEEEECT-TTCCEEEEEEEECC-
T ss_pred CCHHHHHHHHHh-cCCeEEEEEEecC-CCCceeeEEEEEECC
Confidence 999999999995 9996666666676 999999999999994
No 188
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.76 E-value=0.0042 Score=50.95 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=43.3
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHH---hCCCC
Q 038714 233 DERTIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVV---LGGKS 300 (319)
Q Consensus 233 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~v---L~g~~ 300 (319)
..+++||. -.|.| ++|++++++|.+ ||. |++|.|.. ...||+|.|.+.+..... |+|..
T Consensus 24 pt~~L~V~-Ng~L~~~~te~~L~~~F~~-fG~-v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 24 ATQSLVVA-NGGLGNGVSRNQLLPVLEK-CGL-VDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp CCSEEEEE-TCTGGGTCCHHHHHHHHHH-HSC-EEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCEEEEE-CCCCCCCCCHHHHHHHHHh-cCC-eEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 45788885 23344 999999999997 997 77888832 257999999998765544 55643
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.76 E-value=0.0044 Score=54.42 Aligned_cols=67 Identities=16% Similarity=0.296 Sum_probs=50.6
Q ss_pred CCceEEEEccCCCc---CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHH---hCCCCeeeEEE
Q 038714 233 DERTIFLTFSKGYP---ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVV---LGGKSKAKFSI 306 (319)
Q Consensus 233 d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~v---L~g~~~~kf~I 306 (319)
+.+|+|| ++.| +++++++++|.. ||+ |.+|.+-.. ...||.|.|.+++..+.. |+|. .+
T Consensus 3 ~~~~l~V---~nL~~~~~~~~~L~~~F~~-~G~-v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~-----~~ 67 (205)
T 3tyt_A 3 DSPVLMV---YGLDQSKMNCDRVFNVFCL-YGN-VEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNN-----FM 67 (205)
T ss_dssp CCSEEEE---ECCCTTTCCHHHHHHHHTT-TSC-EEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTC-----EE
T ss_pred CCCEEEE---eCCCcccCCHHHHHHHHHh-cCC-eEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCC-----EE
Confidence 4578888 7877 899999999986 999 556655332 368999999999886654 5674 47
Q ss_pred cCceeEEE
Q 038714 307 NGKHKIIQ 314 (319)
Q Consensus 307 ngkhiWar 314 (319)
+||.+-+.
T Consensus 68 ~g~~l~v~ 75 (205)
T 3tyt_A 68 FGQKMNVC 75 (205)
T ss_dssp TTEECEEE
T ss_pred CCceEEEE
Confidence 88887554
No 190
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.74 E-value=0.004 Score=49.31 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=43.4
Q ss_pred CCHHHHHHHH-----------HhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHH---hCCCCeeeEEEcCceeE
Q 038714 247 ISENEIRDFF-----------IRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVV---LGGKSKAKFSINGKHKI 312 (319)
Q Consensus 247 vse~ei~~fF-----------~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~v---L~g~~~~kf~IngkhiW 312 (319)
++++|++++| ..+||. |++|.+-+. ..+++.+||.|.|.+++..... |+|. .++||.+-
T Consensus 27 ~~~~~l~~~f~~~~edl~~~f~~~~G~-V~~v~i~~~-~~~~~~G~~fV~f~~~~~A~~A~~~lng~-----~~~Gr~i~ 99 (104)
T 1jmt_A 27 VSDVEMQEHYDEFFEEVFTEMEEKYGE-VEEMNVCDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNR-----WFNGQPIH 99 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEECCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTC-----EETTEECC
T ss_pred cCHHHHHHHHHHHHHHHHHHhhccCCc-eEEEEEEeC-CCCCccEEEEEEECCHHHHHHHHHHHCCC-----EECCEEEE
Confidence 5666666555 356999 666666554 4578899999999998875544 5674 48999886
Q ss_pred EE
Q 038714 313 IQ 314 (319)
Q Consensus 313 ar 314 (319)
+.
T Consensus 100 v~ 101 (104)
T 1jmt_A 100 AE 101 (104)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 191
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.71 E-value=0.0033 Score=50.05 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhhcCCceeEEEeee-cCCCCCCCceEEEEecchhhHHH---HhCCCCeeeEEEcCceeEEEecc
Q 038714 248 SENEIRDFFIRKFGECFEAINMQE-VASSTEQPLFARLVMDSASFMDV---VLGGKSKAKFSINGKHKIIQILK 317 (319)
Q Consensus 248 se~ei~~fF~~~yGdcie~v~mq~-~~~~~~qplfariVf~s~~~v~~---vL~g~~~~kf~IngkhiWarky~ 317 (319)
+++||++.|. +||. |++|.+-. ++.+++..+||+|.|.+++.... -|+|. .++||.+-+..+-
T Consensus 26 ~~~dl~~~f~-~~G~-V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~-----~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 26 LEVETKEECE-KYGK-VGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR-----YFGGRVVKACFYN 92 (105)
T ss_dssp CHHHHHHHGG-GGSC-EEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEECC
T ss_pred HHHHHHHHHH-hcCC-EEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC-----EECCcEEEEEEcC
Confidence 6899999997 5999 55565544 32346889999999999876443 35675 4799998877553
No 192
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.54 E-value=0.0052 Score=53.58 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=44.2
Q ss_pred CCCCceEEEEccC-CCcCCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHH---hCCCC
Q 038714 231 PPDERTIFLTFSK-GYPISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVV---LGGKS 300 (319)
Q Consensus 231 ~~d~Rt~FvTFS~-G~Pvse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~v---L~g~~ 300 (319)
++..+.+.|...+ .|++++++++++|.+ ||+ |++|.|-+. +...||+|.|.+.+..... |+|..
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~-fG~-V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~ 108 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSK-FGT-VLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQN 108 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHH-HSC-EEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBC
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHh-cCC-EEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 4455555443332 366999999999986 999 777777432 2468999999988764443 55654
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.49 E-value=0.0023 Score=58.80 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=45.4
Q ss_pred CCCCceEEEEccCCCc--C---------CHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHH---h
Q 038714 231 PPDERTIFLTFSKGYP--I---------SENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVV---L 296 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--v---------se~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~v---L 296 (319)
..+.||||| +|.| + +|++|+++|.+ ||+ |+.|.|-. ...||+|.|.+.+..... |
T Consensus 131 ~~~~rtLfV---gnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~-I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 131 RKKNKTLYV---GGIDGALNSKHLKPAQIESRIRFVFSR-LGD-IDRIRYVE------SKNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp CCCCCEEEE---ECTTGGGTTCCCCHHHHHHHHHHHHHT-TSC-EEEEEEEG------GGTEEEEEESSHHHHHHHHHHH
T ss_pred ccCCceeec---CCCChhhhcccccccCcHHHHHHHHHc-cCC-EEEEEEEC------CCCEEEEEeCCHHHHHHHHHHh
Confidence 457899999 6776 4 69999999997 999 77777643 258999999998775544 5
Q ss_pred CCCC
Q 038714 297 GGKS 300 (319)
Q Consensus 297 ~g~~ 300 (319)
+|..
T Consensus 200 ~g~~ 203 (240)
T 3u1l_A 200 SNQT 203 (240)
T ss_dssp TTCC
T ss_pred CCCE
Confidence 5644
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.45 E-value=0.005 Score=52.05 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=53.8
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcC-CceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFG-ECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG-dcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+..+|+|| +|.| +++++|+++|.+ || . |+.|.+-.. ...||.|.|.+.+....++ +|..
T Consensus 117 ~~~~~~l~v---~nl~~~~~~~~l~~~f~~-~G~~-v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~---- 182 (198)
T 1qm9_A 117 FPPSATLHL---SNIPPSVSEEDLKVLFSS-NGGV-VKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHD---- 182 (198)
T ss_dssp CCCCCEEEE---CCCCTTCCHHHHHHHHHH-TTSC-CCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSC----
T ss_pred CCCccEEEE---eCCCCCCCHHHHHHHHHH-cCCC-ceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCc----
Confidence 345789988 7877 999999999997 89 6 666666332 2579999999999877664 4543
Q ss_pred EEc-CceeEEEeccC
Q 038714 305 SIN-GKHKIIQILKN 318 (319)
Q Consensus 305 ~In-gkhiWarky~p 318 (319)
|+ |+.+-+.--.|
T Consensus 183 -~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 183 -LGENHHLRVSFSKS 196 (198)
T ss_dssp -CSSCCSCCEEEECC
T ss_pred -cCCCCeEEEEeecc
Confidence 57 88876554433
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.04 E-value=0.012 Score=51.62 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=53.5
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcC-CceeEEEeeecCCCCCCCceEEEEecchhhHHHHh---CCCCeeeE
Q 038714 231 PPDERTIFLTFSKGYP--ISENEIRDFFIRKFG-ECFEAINMQEVASSTEQPLFARLVMDSASFMDVVL---GGKSKAKF 304 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG-dcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL---~g~~~~kf 304 (319)
.+..+|+|| +|.| ++++||+++|.+ || . |+.|.+-.. ...||.|.|.+.+....++ +|.
T Consensus 148 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~~-i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~----- 212 (229)
T 2adc_A 148 FPPSATLHL---SNIPPSVSEEDLKVLFSS-NGGV-VKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNH----- 212 (229)
T ss_dssp CCSCSEEEE---ECCCTTCCHHHHHHHHHT-TSCC-EEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTC-----
T ss_pred CCCCCEEEE---eCCCccCCHHHHHHHHHH-cCCC-eeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCC-----
Confidence 344689988 6877 899999999997 99 6 666766322 2469999999999877664 453
Q ss_pred EEc-CceeEEEeccC
Q 038714 305 SIN-GKHKIIQILKN 318 (319)
Q Consensus 305 ~In-gkhiWarky~p 318 (319)
.|+ |+.+-+.--.|
T Consensus 213 ~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 213 DLGENHHLRVSFSKS 227 (229)
T ss_dssp BSSSSCBCEEEECSS
T ss_pred ccCCCCeEEEEEecC
Confidence 356 88876654443
No 196
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=95.96 E-value=0.044 Score=45.84 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=44.0
Q ss_pred CCCCceEEEEccC-CCcCCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCce-EEEEecchhhHHHH---hCCCC
Q 038714 231 PPDERTIFLTFSK-GYPISENEIRDFFIRKFGECFEAINMQEVASSTEQPLF-ARLVMDSASFMDVV---LGGKS 300 (319)
Q Consensus 231 ~~d~Rt~FvTFS~-G~Pvse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplf-ariVf~s~~~v~~v---L~g~~ 300 (319)
+...+.++|...+ .|++|++++++.|.+ ||. |++|.|-+. ...| |+|.|.+.+..... |+|..
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~-yG~-V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~ 90 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSK-FGT-VLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQN 90 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTT-SSC-EEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhC-cCC-EEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCe
Confidence 3345677665554 278999999999997 999 666666442 1467 99999998764444 67754
No 197
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.72 E-value=0.066 Score=44.13 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=42.9
Q ss_pred CCCceEEEEccC-CCcCCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCce-EEEEecchhhHH---HHhCCCC
Q 038714 232 PDERTIFLTFSK-GYPISENEIRDFFIRKFGECFEAINMQEVASSTEQPLF-ARLVMDSASFMD---VVLGGKS 300 (319)
Q Consensus 232 ~d~Rt~FvTFS~-G~Pvse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplf-ariVf~s~~~v~---~vL~g~~ 300 (319)
+..++++|...+ .++++++++++.|.+ ||. |++|.|-+. .+| |+|.|.+++... .-|+|..
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~-yG~-V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~ 86 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNP-VGK-VQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGAD 86 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTT-TSC-EEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHh-cCC-EEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 446777655442 377999999999996 999 666666331 265 999999876533 3467764
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=95.69 E-value=0.022 Score=45.17 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhhcCCceeEEEeeecCCC--CCCCceEEEEecchhhHHH---HhCCCCeeeEEEcCceeEEEecc
Q 038714 248 SENEIRDFFIRKFGECFEAINMQEVASS--TEQPLFARLVMDSASFMDV---VLGGKSKAKFSINGKHKIIQILK 317 (319)
Q Consensus 248 se~ei~~fF~~~yGdcie~v~mq~~~~~--~~qplfariVf~s~~~v~~---vL~g~~~~kf~IngkhiWarky~ 317 (319)
.++||++.|.+ ||. |++|.+-.++.+ ++..+||.|.|.+++.... -|+|. .++||.+-+.-|-
T Consensus 28 ~~~dl~~~f~k-~G~-V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~-----~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 28 IVEDVRDECSK-YGL-VKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR-----KFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHT-TSC-EEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEEEC
T ss_pred HHHHHHHHHHc-cCC-EEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC-----EeCCCEEEEEEeC
Confidence 46899999995 999 666776554232 4678999999999876443 46775 5799998877653
No 199
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.67 E-value=0.037 Score=53.32 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=47.3
Q ss_pred CCCCCceEEEEcc-CCCcCCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHH---hCCCCe
Q 038714 230 VPPDERTIFLTFS-KGYPISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVV---LGGKSK 301 (319)
Q Consensus 230 ~~~d~Rt~FvTFS-~G~Pvse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~v---L~g~~~ 301 (319)
.++..+++||-=- -.+-+||+++++.|.+ ||. |++|.|-. ...||+|.|.+.+..... |||...
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~-V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEK-CGL-VDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSC-EEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCC-eEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 4666789999421 1355999999999997 999 67888832 357999999988764444 677653
No 200
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=95.61 E-value=0.02 Score=50.13 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=46.5
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCc-eeEEEeeecCCCCCCCceEEEEecchhhHHHH---hCCC
Q 038714 232 PDERTIFLTFSKGYP--ISENEIRDFFIRKFGEC-FEAINMQEVASSTEQPLFARLVMDSASFMDVV---LGGK 299 (319)
Q Consensus 232 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc-ie~v~mq~~~~~~~qplfariVf~s~~~v~~v---L~g~ 299 (319)
+..+|||| ++.| +++++++++|.. ||.+ +.+|.+-.. . ++...||.|-|.+.+..... |+|.
T Consensus 121 ~p~~~l~v---~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~~~~-~-~~~~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 121 HPSNVLHF---FNAPLEVTEENFFEICDE-LGVKRPTSVKVFSG-K-SERSSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp CCCSEEEE---EEECTTCCHHHHHHHHHH-HTCCCCSEEEECSC-C-SSSSEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCcceEEE---eCCCCCCCHHHHHHHHHh-cCCcceEEEEEEcC-C-CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 44689998 6877 999999999997 9996 266666443 2 45569999999998775554 4553
No 201
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.31 E-value=0.069 Score=42.28 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=47.6
Q ss_pred eEEEEccCCCc--CCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHH---HHhCCCCeeeEEEcCce
Q 038714 236 TIFLTFSKGYP--ISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMD---VVLGGKSKAKFSINGKH 310 (319)
Q Consensus 236 t~FvTFS~G~P--vse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~---~vL~g~~~~kf~Ingkh 310 (319)
.+|| ++.+ ++|++++++|.+ ||+ |..+.+.. +.+||+|-|.+++..+ ..||| ..+.||.
T Consensus 9 wL~V---gNL~~~~te~~L~~lF~q-~G~-V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~-----~~l~gr~ 72 (89)
T 2wbr_A 9 WLLL---KNLTAQIDGPTLRTLCMQ-HGP-LVSFHPYL------NQGIALCKYTTREEANKAQMALNN-----CVLANTT 72 (89)
T ss_dssp EEEE---ECCCTTCCCHHHHHHHHH-HSC-EEEEEEET------TTTEEEEEESSHHHHHHHHHHHTT-----EEETTEE
T ss_pred eEEE---eCCCccCCHHHHHHHHHh-hCC-EEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcC-----CEECCcE
Confidence 5555 6755 999999999997 999 66677633 5899999999986644 45666 3578887
Q ss_pred eEEE
Q 038714 311 KIIQ 314 (319)
Q Consensus 311 iWar 314 (319)
|=++
T Consensus 73 I~V~ 76 (89)
T 2wbr_A 73 IFAE 76 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 202
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=94.28 E-value=0.11 Score=42.09 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHH---HHhCCCCeeeEEEcCceeEEEec
Q 038714 248 SENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMD---VVLGGKSKAKFSINGKHKIIQIL 316 (319)
Q Consensus 248 se~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~---~vL~g~~~~kf~IngkhiWarky 316 (319)
-++||++.|. +||. |++|.+-+. ...+||.|.|.+.+... .-|+|. .++||.+-+.-|
T Consensus 30 l~edl~~~f~-kfG~-V~~v~i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~-----~f~GR~i~v~~~ 90 (114)
T 3s6e_A 30 IKDDVIEECN-KHGG-VIHIYVDKN----SAQGNVYVKCPSIAAAIAAVNALHGR-----WFAGKMITAAYV 90 (114)
T ss_dssp HHHHHHHHHT-TTTC-CSEEEECTT----CTTCCEEEECSSHHHHHHHHHHHTTC-----EETTEECEEEEE
T ss_pred HHHHHHHHHh-ccCC-EEEEEEecC----CCcEEEEEEECCHHHHHHHHHHhCCC-----EECCEEEEEEEE
Confidence 3679999997 5999 567777443 24799999999987644 346775 579999877655
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=94.01 E-value=0.11 Score=42.27 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhcCCceeEEEeeecCC----CCCCCceEEEEecchhhHH---HHhCCCCeeeEEEcCceeEEEec
Q 038714 249 ENEIRDFFIRKFGECFEAINMQEVAS----STEQPLFARLVMDSASFMD---VVLGGKSKAKFSINGKHKIIQIL 316 (319)
Q Consensus 249 e~ei~~fF~~~yGdcie~v~mq~~~~----~~~qplfariVf~s~~~v~---~vL~g~~~~kf~IngkhiWarky 316 (319)
++||++.|. +||. |++|.+-.++. .++..+||.|.|.+++... .-|+|. .++||.+-+.-|
T Consensus 39 eedl~eef~-k~G~-V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-----~f~GR~i~v~~~ 106 (118)
T 3ue2_A 39 EGEVTEECG-KFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-----WFAGRKVVAEVY 106 (118)
T ss_dssp HHHHHHHHT-TTSC-EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEEE
T ss_pred HHHHHHHHh-ccCC-EeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC-----EECCcEEEEEEc
Confidence 689999998 5999 55555544312 2345689999999987643 346785 579999988765
No 204
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.66 E-value=0.16 Score=50.95 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=43.6
Q ss_pred CCceEEEEccCCCcCCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCCC
Q 038714 233 DERTIFLTFSKGYPISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGGK 299 (319)
Q Consensus 233 d~Rt~FvTFS~G~Pvse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g~ 299 (319)
..||+||-+++. +++.|+.+||.+ ||+ |.++.|.+. . | .||-|=|.+.+.++.++...
T Consensus 52 a~rsv~v~~~~~--~~~~~l~~y~~~-~g~-i~~~~~~~~-~-g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIHCPEK--ISENKFLKYLSQ-FGP-INNHFFYES-F-G---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEEECCC-----CHHHHHHGG-GSC-CCCEEEECS-S-S---EEEEEECC---CCHHHHSSC
T ss_pred hcceEEEEcCCC--CCHHHHHHHHHh-cCC-cceEEEEcc-C-C---eEEEEEeCCHHHHHHHHhcc
Confidence 459999987544 999999999965 999 899999885 2 2 99999999999999998763
No 205
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.25 E-value=0.75 Score=36.86 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=44.4
Q ss_pred CCce-EEEEccCCCc--CCHHHHH----HHHHhhcC-CceeEEEeeecCCCCCCCceEEEEecchhhHHHH---hCCCCe
Q 038714 233 DERT-IFLTFSKGYP--ISENEIR----DFFIRKFG-ECFEAINMQEVASSTEQPLFARLVMDSASFMDVV---LGGKSK 301 (319)
Q Consensus 233 d~Rt-~FvTFS~G~P--vse~ei~----~fF~~~yG-dcie~v~mq~~~~~~~qplfariVf~s~~~v~~v---L~g~~~ 301 (319)
.+.| +|| ++.| +++++++ ++|.+ || . |..| + + +||.|+|.+++...+. |+|..
T Consensus 7 p~~T~lYV---~NL~~~~~~~~lk~~L~~lF~~-yGG~-Vl~V----t---g---G~AfV~F~~~esA~~A~~~l~G~~- 70 (96)
T 2diu_A 7 GCHTLLYV---YNLPANKDGKSVSNRLRRLSDN-CGGK-VLSI----T---G---CSAILRFINQDSAERAQKRMENED- 70 (96)
T ss_dssp CSSEEEEE---ESCCTTSCHHHHHHHHHHHHHT-TTCC-EEEC----C---T---TCEEEEESSHHHHHHHHHHHTTCC-
T ss_pred CcceEEEE---eCCCCcCCHHHHHHHHHHHHHH-cCCe-eEEE----e---c---CEEEEEECCHHHHHHHHHHhcCCc-
Confidence 3556 666 8888 8988854 89997 95 7 4444 2 2 9999999999987655 45754
Q ss_pred eeEEEcCceeEEE
Q 038714 302 AKFSINGKHKIIQ 314 (319)
Q Consensus 302 ~kf~IngkhiWar 314 (319)
+.||.+=+.
T Consensus 71 ----l~gr~i~v~ 79 (96)
T 2diu_A 71 ----VFGNRIIVS 79 (96)
T ss_dssp ----SSSSCCEEE
T ss_pred ----cCCceEEEE
Confidence 677777554
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.54 E-value=0.5 Score=39.06 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=38.8
Q ss_pred CcCCHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecc-hhhHHHHhCCCCeeeEEEcCce
Q 038714 245 YPISENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDS-ASFMDVVLGGKSKAKFSINGKH 310 (319)
Q Consensus 245 ~Pvse~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s-~~~v~~vL~g~~~~kf~Ingkh 310 (319)
.++|+++|+++|.. ||+ |..|.+... +..|.|-|.. +......+..-+.-++.|+|+.
T Consensus 29 ~~~sredLke~F~~-~G~-V~~Vd~~~g------~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 29 DQTCREDLHILFSN-HGE-IKWIDFVRG------AKEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SSCCHHHHHHHTCS-SCC-EEEEECCTT------CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred CcCCHHHHHHHHHh-cCC-EEEEEEecC------CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 34899999999997 999 888888654 1259999999 5443333332222344666643
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=87.37 E-value=1.3 Score=38.34 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhhcCCceeEEEeeecC----CCCCCCceEEEEecchhhHH---HHhCCCCeeeEEEcCceeEEEec
Q 038714 248 SENEIRDFFIRKFGECFEAINMQEVA----SSTEQPLFARLVMDSASFMD---VVLGGKSKAKFSINGKHKIIQIL 316 (319)
Q Consensus 248 se~ei~~fF~~~yGdcie~v~mq~~~----~~~~qplfariVf~s~~~v~---~vL~g~~~~kf~IngkhiWarky 316 (319)
.++|+++.|. +||+ |++|.+-++. .+++..+||.|.|.+++... .-|+|. +++||.|-+.-|
T Consensus 142 ~~~dl~~e~~-~~G~-v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr-----~~~gr~i~~~~~ 210 (222)
T 3dxb_A 142 LEGEVTEECG-KFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-----WFAGRKVVAEVY 210 (222)
T ss_dssp HHHHHHHHHT-TTSC-EEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----BSSSSBCEEEEC
T ss_pred HHHHHHHHHH-ccCC-eEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc-----eECCeEEEEEEc
Confidence 4678999998 5999 5555554321 23478899999999987644 557785 479999887655
No 208
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=78.95 E-value=2.7 Score=35.47 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=47.4
Q ss_pred CCc-CCHHHHHHHHHhhcCCceeEEEeeecC--------CCCC-----CCceEEEEecchhhHHHHhCCCCeeeEEEcCc
Q 038714 244 GYP-ISENEIRDFFIRKFGECFEAINMQEVA--------SSTE-----QPLFARLVMDSASFMDVVLGGKSKAKFSINGK 309 (319)
Q Consensus 244 G~P-vse~ei~~fF~~~yGdcie~v~mq~~~--------~~~~-----qplfariVf~s~~~v~~vL~g~~~~kf~Ingk 309 (319)
||| =..+.|.++|++ ||+.+|.+.+.++. ...+ ..-+-+|.|+|....++.|.-..+ .|+|-
T Consensus 14 GFp~~~~~~VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~---ii~G~ 89 (132)
T 3p3d_A 14 GYPETMANQVIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA---VFNGV 89 (132)
T ss_dssp CCCGGGHHHHHHHHGG-GSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC---EETTE
T ss_pred ecCHHHHHHHHHHHHh-hceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe---EeCcE
Confidence 898 567788999997 89999987664320 1123 345569999999999999984433 36775
Q ss_pred eeEEEec
Q 038714 310 HKIIQIL 316 (319)
Q Consensus 310 hiWarky 316 (319)
-|=+.-|
T Consensus 90 mIGV~Py 96 (132)
T 3p3d_A 90 LLGVIPY 96 (132)
T ss_dssp ECEEEEC
T ss_pred EEEEEEC
Confidence 4444433
No 209
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=75.53 E-value=1.3 Score=34.74 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHhhcCCce
Q 038714 247 ISENEIRDFFIRKFGECF 264 (319)
Q Consensus 247 vse~ei~~fF~~~yGdci 264 (319)
-|.+||++||..+||+-|
T Consensus 60 ~sd~eI~~~~v~RYG~fV 77 (84)
T 2hl7_A 60 KSDGEIVDYMVARYGDFV 77 (84)
T ss_dssp CCHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHhcCCee
Confidence 479999999999999844
No 210
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=74.77 E-value=1.3 Score=35.08 Aligned_cols=18 Identities=28% Similarity=0.671 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHhhcCCce
Q 038714 247 ISENEIRDFFIRKFGECF 264 (319)
Q Consensus 247 vse~ei~~fF~~~yGdci 264 (319)
-|.+||++||..+||+-|
T Consensus 57 ~Sd~eI~~~mv~RYGdfV 74 (90)
T 2kw0_A 57 KSKKEIVDYMVARYGNFV 74 (90)
T ss_dssp CCHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHhcCCeE
Confidence 479999999999999843
No 211
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.68 E-value=16 Score=28.70 Aligned_cols=54 Identities=24% Similarity=0.262 Sum_probs=38.2
Q ss_pred HHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC--CCCeeeEEEcCceeEEEeccC
Q 038714 250 NEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG--GKSKAKFSINGKHKIIQILKN 318 (319)
Q Consensus 250 ~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~--g~~~~kf~IngkhiWarky~p 318 (319)
.++.+.|.. ||+ |..|.+... + |.|.|++.+....+++ |. .|+||.+=++.--|
T Consensus 30 ~~L~~~F~~-~G~-Vi~vr~~~d----~----~fVtF~d~~sAlaAi~mnG~-----~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFAS-FGE-VILIRFVED----K----MWVTFLEGSSALNVLSLNGK-----ELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHT-TCC-EEEEEECSS----S----EEEEESSHHHHHHGGGGTTC-----EETTEEEEEEECCC
T ss_pred HHHHHHHHh-CCC-eEEEEEecC----C----EEEEECChHHHHHHHhcCCe-----EeCCeEEEEEeCCC
Confidence 678999997 998 445555433 1 8999999888666655 53 58898886654433
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.89 E-value=30 Score=28.02 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=53.1
Q ss_pred ceEEEEccCCCc--CCHHHHHHHHHhh---cCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhCC-CCeeeEEEcC
Q 038714 235 RTIFLTFSKGYP--ISENEIRDFFIRK---FGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLGG-KSKAKFSING 308 (319)
Q Consensus 235 Rt~FvTFS~G~P--vse~ei~~fF~~~---yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~g-~~~~kf~Ing 308 (319)
+++-| .|.| ++++-+.-||+++ -|.=|+.|.-.. .=|.|+|...+.+++||.. ++ .++|
T Consensus 9 ~~I~V---~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H----~L~~ 73 (104)
T 2dhx_A 9 VAVEV---RGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADH----ELHG 73 (104)
T ss_dssp CEEEE---ESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCC----BSSS
T ss_pred cEEEE---ECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcc----eecC
Confidence 56655 6777 8888999999984 555566665421 3489999999999999997 66 7888
Q ss_pred ceeEEEeccCC
Q 038714 309 KHKIIQILKNN 319 (319)
Q Consensus 309 khiWarky~pk 319 (319)
-.+=++-|.|+
T Consensus 74 ~~LsV~P~~~~ 84 (104)
T 2dhx_A 74 AQLSLRPAPPR 84 (104)
T ss_dssp SBCEEEECCCC
T ss_pred eEEEEEcCCCC
Confidence 88777777664
No 213
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=62.77 E-value=26 Score=28.96 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=46.8
Q ss_pred CCCCceEEEEccCCCcCCHHHHHHHHHhhc-----CCceeEEEeeecCCCCCCCceEEEEecchhh---HHHHhCCCCee
Q 038714 231 PPDERTIFLTFSKGYPISENEIRDFFIRKF-----GECFEAINMQEVASSTEQPLFARLVMDSASF---MDVVLGGKSKA 302 (319)
Q Consensus 231 ~~d~Rt~FvTFS~G~Pvse~ei~~fF~~~y-----Gdcie~v~mq~~~~~~~qplfariVf~s~~~---v~~vL~g~~~~ 302 (319)
-+++||+ -.|.=-.-|+.+.|+.|.+. | |+ +..|+..- ..+. |.|.|.++++ ....|+|..
T Consensus 18 ~~~~rti-aL~~ipDtvndarIr~lve~-~~~i~~g~-i~KI~L~p----DH~G--Aivef~d~~~AgKasLaL~G~e-- 86 (117)
T 2l9w_A 18 KELETLI-CLFPLSDKVSPSLICQFLQE-EIHINEKD-IRKILLVS----DFNG--AIIIFRDSKFAAKMLMILNGSQ-- 86 (117)
T ss_dssp TTTTSCE-EEECCCTTCCHHHHHHHHHH-HTCCCTTT-CSEEEEET----TTTE--EEEECSCHHHHHHHHHHHSSEE--
T ss_pred ccCCcEE-EEecCCCCCCHHHHHHHHhh-hhccCccc-eeEEEEec----CCCc--eEEEEccchhhHHHHhhcCCee--
Confidence 5678888 33433333999999999997 8 98 55666532 2222 8999999988 556788864
Q ss_pred eEEEcCcee
Q 038714 303 KFSINGKHK 311 (319)
Q Consensus 303 kf~Ingkhi 311 (319)
|+||.+
T Consensus 87 ---f~gr~L 92 (117)
T 2l9w_A 87 ---FQGKVI 92 (117)
T ss_dssp ---ETTEEE
T ss_pred ---ecCeEE
Confidence 556655
No 214
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.52 E-value=4.1 Score=32.85 Aligned_cols=58 Identities=19% Similarity=0.450 Sum_probs=40.4
Q ss_pred CCCcCCHHHHHHHHHhhcCCce-----------------eEEEeeecCCCCCCCceEEEEecchhh-----HHHHhCCCC
Q 038714 243 KGYPISENEIRDFFIRKFGECF-----------------EAINMQEVASSTEQPLFARLVMDSASF-----MDVVLGGKS 300 (319)
Q Consensus 243 ~G~Pvse~ei~~fF~~~yGdci-----------------e~v~mq~~~~~~~qplfariVf~s~~~-----v~~vL~g~~ 300 (319)
.|.-.=++.|.++|.++||.-+ ++|.++-- ++ -|.||.+.+ +.+||....
T Consensus 3 ~~~~~LReqVe~lFn~kygeALG~~~pV~VPY~~i~~np~av~V~GL-----Pe---gIpFr~P~~ygi~~Le~IL~~~~ 74 (99)
T 2dzr_A 3 SGSSGLREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGL-----PP---GIPFRKPCTFGSQNLERILAVAD 74 (99)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHTCSSCCCCCHHHHHHCSSSEEEESC-----CT---TCCSSCGGGSCHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCceeCCHHHHhcCCCeEEEecC-----CC---CCcccCCCcccHHHHHHHHHhcc
Confidence 4555568899999999999311 34444432 11 155776655 899999999
Q ss_pred eeeEEEcC
Q 038714 301 KAKFSING 308 (319)
Q Consensus 301 ~~kf~Ing 308 (319)
..+|.|+-
T Consensus 75 ~I~F~Ikr 82 (99)
T 2dzr_A 75 KIKFTVTR 82 (99)
T ss_dssp TCEEEECS
T ss_pred CcEEEEec
Confidence 99999974
No 215
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.31 E-value=37 Score=26.94 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHH--hCCCCeeeEEEcCceeEEEe
Q 038714 250 NEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVV--LGGKSKAKFSINGKHKIIQI 315 (319)
Q Consensus 250 ~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~v--L~g~~~~kf~IngkhiWark 315 (319)
.++.+.|.. ||. |..|.+... . |.|.|++.+....+ |+|. .|+||.+=++.
T Consensus 39 ~~L~~~F~~-~G~-Vilvr~v~d-~-------~fVtF~d~~sAl~AI~ldG~-----~v~Gr~L~V~~ 91 (95)
T 1ufw_A 39 TELMQTLGS-YGT-IVLVRINQG-Q-------MLVTFADSHSALSVLDVDGM-----KVKGRAVKISG 91 (95)
T ss_dssp HHHHHHHHH-HSC-CSEEEEETT-E-------EEEECSCSHHHHHHHHGGGS-----EETTEEEEEEC
T ss_pred HHHHHHHHH-CCC-EEEEEEecC-c-------EEEEEcChHHHHHHHhcCCe-----eeCCeEEEEec
Confidence 568999998 997 446666543 1 99999888775444 5564 58888876654
No 216
>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.18 E-value=13 Score=29.44 Aligned_cols=62 Identities=13% Similarity=0.347 Sum_probs=36.6
Q ss_pred CCcCCHHHHHHHHHhhcCCceeEEEeeec---C----CCCCCCceE-----EEEecchhh-----HHHHhCCCCeeeEEE
Q 038714 244 GYPISENEIRDFFIRKFGECFEAINMQEV---A----SSTEQPLFA-----RLVMDSASF-----MDVVLGGKSKAKFSI 306 (319)
Q Consensus 244 G~Pvse~ei~~fF~~~yGdcie~v~mq~~---~----~~~~qplfa-----riVf~s~~~-----v~~vL~g~~~~kf~I 306 (319)
|--.=++.|.++|+.+||. ++.+.++ + ..+....++ -|.||.+.+ +.+||.+....+|.|
T Consensus 4 ~~~~Lr~qV~~Lfn~kyge---ALG~~~pv~VPY~~~~~~p~~v~V~GlP~gi~FR~P~~y~I~~Le~IL~~~~~I~f~i 80 (89)
T 2dn5_A 4 GSSGLREQVKELFNEKYGE---ALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYDIHRLEKILKAREHVRMVI 80 (89)
T ss_dssp SCCCHHHHHHHHHHHHHHH---HTTCSSCCCCCHHHHHHCTTSEEEESCCTTCCCCCSSSCCHHHHHHHHTTTTTCEEEE
T ss_pred cchhHHHHHHHHhhhhHHH---HcCCCCceeccHHHHhcCCCeEEEEeCCCCccccCCccccHHHHHHHHhhccCceEEE
Confidence 3334478899999999993 2222110 0 001111111 145666554 899999999999987
Q ss_pred cC
Q 038714 307 NG 308 (319)
Q Consensus 307 ng 308 (319)
-.
T Consensus 81 i~ 82 (89)
T 2dn5_A 81 IN 82 (89)
T ss_dssp SS
T ss_pred Ee
Confidence 54
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=39.43 E-value=1.1e+02 Score=24.99 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=37.3
Q ss_pred CCcC-CHHHHHHHHHhhcCCceeEEEeeecCCCCCCCceEEEEecchhhHHHHhC
Q 038714 244 GYPI-SENEIRDFFIRKFGECFEAINMQEVASSTEQPLFARLVMDSASFMDVVLG 297 (319)
Q Consensus 244 G~Pv-se~ei~~fF~~~yGdcie~v~mq~~~~~~~qplfariVf~s~~~v~~vL~ 297 (319)
|||- ....|.++|.+ ||+.++..+ .+..-+=+|-|++.....+.|.
T Consensus 31 GFp~~~~~~VL~~F~~-~G~Iv~~~~-------~~~~NWihI~Y~s~~~A~rAL~ 77 (119)
T 1wwh_A 31 GFPQASASYILLQFAQ-YGNILKHVM-------SNTGNWMHIRYQSKLQARKALS 77 (119)
T ss_dssp CCCGGGHHHHHHHHHT-TSCEEEEEE-------CSSSSEEEEEESSHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh-hCcEEEecc-------CCCCCeEEEEeCCHHHHHHHHH
Confidence 7884 45677999997 999777765 2346789999999999999998
No 218
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=28.04 E-value=34 Score=26.11 Aligned_cols=15 Identities=20% Similarity=0.620 Sum_probs=13.4
Q ss_pred CCcCCHHHHHHHHHh
Q 038714 244 GYPISENEIRDFFIR 258 (319)
Q Consensus 244 G~Pvse~ei~~fF~~ 258 (319)
-+||+||+|+.|+.+
T Consensus 7 ~~~iTEe~VrryL~r 21 (73)
T 1i27_A 7 DVQVTEDAVRRYLTR 21 (73)
T ss_dssp CSSCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHc
Confidence 378999999999996
No 219
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=22.40 E-value=25 Score=26.00 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.0
Q ss_pred CeeeEEEcCcee----------EEEeccC
Q 038714 300 SKAKFSINGKHK----------IIQILKN 318 (319)
Q Consensus 300 ~~~kf~Ingkhi----------Warky~p 318 (319)
..-.++||||.+ |-.+|.|
T Consensus 17 ddtsltingkeisyvhdavknkwssrylp 45 (73)
T 2jv8_A 17 DDTSLTINGKEISYVHDAVKNKWSSRYLP 45 (73)
T ss_dssp TTEEEEETTEECCCCCCSSSCCCCCTTST
T ss_pred cCceeEECCEEeehHHHHHhcccccccCC
Confidence 345689999876 8888887
No 220
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=22.36 E-value=44 Score=26.01 Aligned_cols=16 Identities=19% Similarity=0.559 Sum_probs=13.6
Q ss_pred CCCcCCHHHHHHHHHh
Q 038714 243 KGYPISENEIRDFFIR 258 (319)
Q Consensus 243 ~G~Pvse~ei~~fF~~ 258 (319)
.-+||+||+|+.|+.+
T Consensus 15 ~~~~iTEe~VRryL~r 30 (82)
T 1nha_A 15 GDVQVTEDAVRRYLTR 30 (82)
T ss_dssp -CCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh
Confidence 4578999999999996
Done!