Query 038717
Match_columns 100
No_of_seqs 123 out of 1009
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:37:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0316 sufA Fe-S cluster asse 100.0 1.2E-34 2.6E-39 190.1 10.8 87 2-88 24-110 (110)
2 PRK09502 iscA iron-sulfur clus 100.0 2.1E-33 4.5E-38 183.2 10.5 85 4-88 23-107 (107)
3 TIGR02011 IscA iron-sulfur clu 100.0 3.6E-33 7.8E-38 181.5 10.5 86 3-88 20-105 (105)
4 PLN03082 Iron-sulfur cluster a 100.0 4.7E-33 1E-37 193.5 9.7 86 4-89 77-163 (163)
5 PRK13623 iron-sulfur cluster i 100.0 1.4E-32 3E-37 181.2 10.5 85 4-88 31-115 (115)
6 PRK09504 sufA iron-sulfur clus 100.0 1.4E-32 3.1E-37 183.2 10.4 85 4-88 38-122 (122)
7 TIGR01997 sufA_proteo FeS asse 100.0 1.9E-32 4.2E-37 178.6 10.6 84 4-87 23-106 (107)
8 TIGR00049 Iron-sulfur cluster 100.0 1.3E-30 2.7E-35 168.6 10.2 85 4-88 21-105 (105)
9 KOG1119 Mitochondrial Fe-S clu 99.9 6.1E-28 1.3E-32 168.9 6.7 85 5-89 113-198 (199)
10 KOG1120 Fe-S cluster biosynthe 99.9 1.3E-27 2.7E-32 158.9 7.3 88 1-88 47-134 (134)
11 PRK11190 Fe/S biogenesis prote 99.9 1.3E-23 2.7E-28 149.5 10.3 75 4-78 22-98 (192)
12 TIGR03341 YhgI_GntY IscR-regul 99.9 4.7E-23 1E-27 146.4 10.2 75 4-78 21-97 (190)
13 TIGR01911 HesB_rel_seleno HesB 99.9 1.1E-22 2.4E-27 129.7 7.9 67 5-72 26-92 (92)
14 PF01521 Fe-S_biosyn: Iron-sul 99.8 2.6E-19 5.7E-24 116.5 6.3 78 7-84 24-112 (112)
15 COG4841 Uncharacterized protei 98.9 6.4E-09 1.4E-13 65.7 6.0 69 2-71 20-94 (95)
16 PF05610 DUF779: Protein of un 93.7 0.5 1.1E-05 30.3 6.6 67 10-77 15-87 (95)
17 COG4918 Uncharacterized protei 92.7 0.19 4E-06 32.8 3.5 58 5-64 25-86 (114)
18 cd01234 PH_CADPS CADPS (Ca2+-d 77.0 2.3 5.1E-05 28.0 2.2 38 46-90 45-82 (117)
19 COG3564 Uncharacterized protei 71.1 23 0.0005 23.0 5.7 67 9-76 28-100 (116)
20 KOG4777 Aspartate-semialdehyde 65.4 6.8 0.00015 30.0 2.8 39 38-76 114-152 (361)
21 COG4647 AcxC Acetone carboxyla 58.4 5.4 0.00012 27.3 1.1 20 68-87 60-80 (165)
22 PF10571 UPF0547: Uncharacteri 49.5 9.7 0.00021 18.5 0.9 14 74-87 11-25 (26)
23 PF03852 Vsr: DNA mismatch end 39.9 22 0.00048 21.8 1.6 33 17-49 34-66 (75)
24 COG4888 Uncharacterized Zn rib 37.0 16 0.00034 23.8 0.6 18 78-95 47-65 (104)
25 PF13719 zinc_ribbon_5: zinc-r 36.7 12 0.00026 19.5 0.0 19 79-97 4-23 (37)
26 KOG0712 Molecular chaperone (D 35.1 77 0.0017 24.8 4.3 67 3-72 200-274 (337)
27 PF14685 Tricorn_PDZ: Tricorn 34.3 21 0.00045 22.4 0.9 27 30-56 41-67 (88)
28 PRK01194 V-type ATP synthase s 34.2 51 0.0011 23.1 2.9 39 39-77 119-157 (185)
29 COG3369 Zinc finger domain con 32.9 28 0.0006 21.5 1.3 19 78-96 32-50 (78)
30 TIGR02588 conserved hypothetic 32.2 42 0.0009 22.5 2.1 54 20-76 50-109 (122)
31 COG5134 Uncharacterized conser 30.7 79 0.0017 23.5 3.5 37 7-46 76-112 (272)
32 PF10008 DUF2251: Uncharacteri 30.2 1.5E+02 0.0033 19.0 6.1 80 4-86 9-94 (97)
33 PF11146 DUF2905: Protein of u 28.5 64 0.0014 19.1 2.3 21 30-50 30-50 (64)
34 PF07610 DUF1573: Protein of u 28.2 45 0.00098 17.8 1.5 8 77-84 18-25 (45)
35 cd00991 PDZ_archaeal_metallopr 25.7 81 0.0017 18.4 2.5 16 29-44 28-43 (79)
36 COG3269 Predicted RNA-binding 25.4 1.6E+02 0.0034 18.0 3.6 33 18-50 16-48 (73)
37 PHA02768 hypothetical protein; 23.5 22 0.00048 20.5 -0.3 11 79-89 7-18 (55)
38 TIGR00105 L31 ribosomal protei 22.7 31 0.00066 20.5 0.1 16 79-94 15-30 (68)
39 smart00704 ZnF_CDGSH CDGSH-typ 22.3 78 0.0017 16.6 1.7 29 68-96 5-33 (38)
40 PF13465 zf-H2C2_2: Zinc-finge 21.6 27 0.00058 16.5 -0.2 10 78-87 15-25 (26)
41 PF09360 zf-CDGSH: Iron-bindin 21.4 48 0.001 17.4 0.7 12 78-89 20-31 (38)
42 PF06905 FAIM1: Fas apoptotic 21.0 2.9E+02 0.0062 19.5 4.8 65 8-72 65-146 (177)
43 KOG4352 Fas-mediated apoptosis 20.9 3.1E+02 0.0067 19.3 5.2 33 40-72 106-143 (187)
44 PRK10234 DNA-binding transcrip 20.6 74 0.0016 21.1 1.7 33 31-63 61-96 (118)
45 KOG0064 Peroxisomal long-chain 20.6 1.3E+02 0.0029 25.6 3.4 40 38-86 484-523 (728)
46 PF13717 zinc_ribbon_4: zinc-r 20.5 31 0.00067 17.8 -0.1 18 79-96 4-22 (36)
No 1
>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=190.13 Aligned_cols=87 Identities=46% Similarity=0.869 Sum_probs=83.9
Q ss_pred CCCCeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCCCCCC
Q 038717 2 RQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCG 81 (100)
Q Consensus 2 ~~~~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~~C~ 81 (100)
+++.+|||+|+.+||+|++|.|.|+++++++|.+++.+|++|+||+.+++||.|++|||+++.++++|+|+|||++.+|+
T Consensus 24 ~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~IDyv~~~~g~~F~~~NPNA~~~Cg 103 (110)
T COG0316 24 EENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEIDYVEDLLGSGFTFKNPNAKSSCG 103 (110)
T ss_pred CCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEEEEEEcCcCCceEEECCCCCcccc
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccc
Q 038717 82 CGESFMT 88 (100)
Q Consensus 82 CG~Sf~~ 88 (100)
||+||+.
T Consensus 104 Cg~Sf~v 110 (110)
T COG0316 104 CGESFSV 110 (110)
T ss_pred CCCCCCC
Confidence 9999974
No 2
>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=183.23 Aligned_cols=85 Identities=47% Similarity=0.877 Sum_probs=81.7
Q ss_pred CCeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCCCCCCCC
Q 038717 4 RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCG 83 (100)
Q Consensus 4 ~~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~~C~CG 83 (100)
..+|||+|+.+||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||++++++++|+|+|||+..+||||
T Consensus 23 ~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~IDy~~~~~~~~F~f~NPna~~~CgCG 102 (107)
T PRK09502 23 GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCG 102 (107)
T ss_pred CceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEEEeeCCCCceEEEECCCCCCccCCC
Confidence 45799999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred CCccc
Q 038717 84 ESFMT 88 (100)
Q Consensus 84 ~Sf~~ 88 (100)
+||+.
T Consensus 103 ~Sf~~ 107 (107)
T PRK09502 103 ESFHV 107 (107)
T ss_pred CCeeC
Confidence 99973
No 3
>TIGR02011 IscA iron-sulfur cluster assembly protein IscA. This clade is limited to the proteobacteria.
Probab=100.00 E-value=3.6e-33 Score=181.47 Aligned_cols=86 Identities=50% Similarity=0.871 Sum_probs=82.2
Q ss_pred CCCeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCCCCCCC
Q 038717 3 QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGC 82 (100)
Q Consensus 3 ~~~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~~C~C 82 (100)
+..+|||+|..+||+|++|.|.|+++++++|++++.+|++|+||+.++.||+|++|||++++++++|+|+|||++.+|||
T Consensus 20 ~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~~~~~~~F~~~nPna~~~CgC 99 (105)
T TIGR02011 20 KGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFVKEGLNEGFKFTNPNVKDECGC 99 (105)
T ss_pred CCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEecCCCcceEEEECCCCCccCCC
Confidence 34689999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccc
Q 038717 83 GESFMT 88 (100)
Q Consensus 83 G~Sf~~ 88 (100)
|+||+.
T Consensus 100 g~Sf~~ 105 (105)
T TIGR02011 100 GESFHV 105 (105)
T ss_pred CCCccC
Confidence 999973
No 4
>PLN03082 Iron-sulfur cluster assembly; Provisional
Probab=100.00 E-value=4.7e-33 Score=193.52 Aligned_cols=86 Identities=35% Similarity=0.718 Sum_probs=82.7
Q ss_pred CCeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEE-ECCCCCCCCCC
Q 038717 4 RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVF-INPNSKGQCGC 82 (100)
Q Consensus 4 ~~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i-~nP~~~~~C~C 82 (100)
+.+|||.|+.+||+||+|.|.|+++++++|.+++.+|++|+||+.+++||+|++|||++++++++|+| +|||++.+|||
T Consensus 77 ~~~LRl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~IDYve~l~~~gF~f~~NPna~~~CgC 156 (163)
T PLN03082 77 DKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSC 156 (163)
T ss_pred CceEEEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCEEEeecCCCCCeeEEecCCCCCCCcCC
Confidence 46899999999999999999999888899999999999999999999999999999999999999999 99999999999
Q ss_pred CCCcccC
Q 038717 83 GESFMTT 89 (100)
Q Consensus 83 G~Sf~~~ 89 (100)
|+||++|
T Consensus 157 G~SF~vk 163 (163)
T PLN03082 157 KSSFMVK 163 (163)
T ss_pred CCCEeCC
Confidence 9999874
No 5
>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional
Probab=100.00 E-value=1.4e-32 Score=181.17 Aligned_cols=85 Identities=32% Similarity=0.711 Sum_probs=81.6
Q ss_pred CCeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCCCCCCCC
Q 038717 4 RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCG 83 (100)
Q Consensus 4 ~~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~~C~CG 83 (100)
..+|||+|+.+||+|++|.|.++++++++|++++.+|++|+||+.+++||+|++|||+++..+++|+|+|||++.+||||
T Consensus 31 ~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~IDy~~~~~~~~F~f~NPn~~~~CgCg 110 (115)
T PRK13623 31 DLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAEVDYTEGLEGSRFVIKNPNAKTTCGCG 110 (115)
T ss_pred ceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCEEEeecCCCcceEEEECCCCCcCCCCC
Confidence 45699999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred CCccc
Q 038717 84 ESFMT 88 (100)
Q Consensus 84 ~Sf~~ 88 (100)
+||++
T Consensus 111 ~SF~~ 115 (115)
T PRK13623 111 SSFSI 115 (115)
T ss_pred cCccC
Confidence 99974
No 6
>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=183.20 Aligned_cols=85 Identities=38% Similarity=0.717 Sum_probs=81.9
Q ss_pred CCeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCCCCCCCC
Q 038717 4 RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCG 83 (100)
Q Consensus 4 ~~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~~C~CG 83 (100)
..+|||.|.++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||+++.++++|+|+|||+..+|+||
T Consensus 38 ~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~~IDy~~~~~~~gF~f~NPna~~~CgCG 117 (122)
T PRK09504 38 MKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGTEVDYVREGLNQIFKFHNPKAQNECGCG 117 (122)
T ss_pred CceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCcEEEeecCCCcceEEEECCCCCCCcCCC
Confidence 45899999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccc
Q 038717 84 ESFMT 88 (100)
Q Consensus 84 ~Sf~~ 88 (100)
+||++
T Consensus 118 ~SF~v 122 (122)
T PRK09504 118 ESFGV 122 (122)
T ss_pred CCeeC
Confidence 99973
No 7
>TIGR01997 sufA_proteo FeS assembly scaffold SufA. This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.
Probab=100.00 E-value=1.9e-32 Score=178.57 Aligned_cols=84 Identities=44% Similarity=0.894 Sum_probs=81.4
Q ss_pred CCeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCCCCCCCC
Q 038717 4 RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCG 83 (100)
Q Consensus 4 ~~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~~C~CG 83 (100)
..+|||.|+.+||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||+++.++++|+|+|||++..||||
T Consensus 23 ~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~~~~~~~F~~~NPn~~~~CgCG 102 (107)
T TIGR01997 23 AVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDFVRTTLRQGFKFNNPNATSACGCG 102 (107)
T ss_pred CcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEEEEcCCcceEEEECCCCCCccCCC
Confidence 46899999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 038717 84 ESFM 87 (100)
Q Consensus 84 ~Sf~ 87 (100)
+||+
T Consensus 103 ~Sf~ 106 (107)
T TIGR01997 103 ESFE 106 (107)
T ss_pred CCcc
Confidence 9996
No 8
>TIGR00049 Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.
Probab=99.97 E-value=1.3e-30 Score=168.63 Aligned_cols=85 Identities=47% Similarity=0.913 Sum_probs=81.7
Q ss_pred CCeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCCCCCCCC
Q 038717 4 RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCG 83 (100)
Q Consensus 4 ~~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~~C~CG 83 (100)
+.+|||+++.+||+|++|.|.++++++++|++++.+|++|+|++.+++||+|++|||+++..+++|+|.|||+..+|+||
T Consensus 21 ~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~~~~~~~f~i~nPn~~~~c~cg 100 (105)
T TIGR00049 21 NLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVEELLGSGFTFTNPNAKGTCGCG 100 (105)
T ss_pred ceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEeecCCcceEEEECCCCCccCCCC
Confidence 46899999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred CCccc
Q 038717 84 ESFMT 88 (100)
Q Consensus 84 ~Sf~~ 88 (100)
+||++
T Consensus 101 ~sf~~ 105 (105)
T TIGR00049 101 KSFSV 105 (105)
T ss_pred cCccC
Confidence 99973
No 9
>KOG1119 consensus Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain) [Energy production and conversion; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.1e-28 Score=168.92 Aligned_cols=85 Identities=28% Similarity=0.655 Sum_probs=82.1
Q ss_pred CeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEE-ECCCCCCCCCCC
Q 038717 5 PYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVF-INPNSKGQCGCG 83 (100)
Q Consensus 5 ~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i-~nP~~~~~C~CG 83 (100)
..|||.|.+|||+||+|.|.+|....++|.+++.+|.+|+||..++.+++|+||||.++++++.|+| .||.++.+|+||
T Consensus 113 e~LRl~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~~ELIrSsF~ivnNP~A~~gCsCg 192 (199)
T KOG1119|consen 113 EFLRLTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYTNELIRSSFRIVNNPSAKQGCSCG 192 (199)
T ss_pred ceEEEEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehHHHHhhhhheeecCcccccCCCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999997 689999999999
Q ss_pred CCcccC
Q 038717 84 ESFMTT 89 (100)
Q Consensus 84 ~Sf~~~ 89 (100)
+||.++
T Consensus 193 SSF~ik 198 (199)
T KOG1119|consen 193 SSFDIK 198 (199)
T ss_pred cccccC
Confidence 999875
No 10
>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.3e-27 Score=158.86 Aligned_cols=88 Identities=64% Similarity=1.164 Sum_probs=84.6
Q ss_pred CCCCCeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCCCCC
Q 038717 1 QRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQC 80 (100)
Q Consensus 1 ~~~~~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~~C 80 (100)
|++...|||.|+..||+|++|.|.+.+++...|.+++.+|++|+|+++++..|-|+++||+++..+++|+|.|||++..|
T Consensus 47 ~~e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l~liGteMDyvddkL~Sefvf~npna~gtc 126 (134)
T KOG1120|consen 47 KPEDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALLTLIGTEMDYVDDKLSSEFVFSNPNAKGTC 126 (134)
T ss_pred CCcCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEcccceeeeccceehhhhhhhcCceEeeCCCccccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccc
Q 038717 81 GCGESFMT 88 (100)
Q Consensus 81 ~CG~Sf~~ 88 (100)
|||+||+.
T Consensus 127 GcgeSf~~ 134 (134)
T KOG1120|consen 127 GCGESFSV 134 (134)
T ss_pred cccccccC
Confidence 99999974
No 11
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=99.90 E-value=1.3e-23 Score=149.54 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=71.6
Q ss_pred CCeEEEEEecCCCCCcEEEEEe--eccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCCC
Q 038717 4 RPYLKLGVKARGCNGLSYTLNY--ADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKG 78 (100)
Q Consensus 4 ~~~lRl~v~~~GC~G~~y~l~l--~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~ 78 (100)
+.+|||+|+++||+|++|.|.| ++++.++|.+++.+|++|+||+.+++||+|++|||+++.++++|+|+|||++.
T Consensus 22 ~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~IDyve~~~g~gF~f~NPNa~~ 98 (192)
T PRK11190 22 GTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEIDFVTDQLGSQLTLKAPNAKM 98 (192)
T ss_pred CceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEEEEeecCCCCceEEECCCCCC
Confidence 4579999999999999999999 77888999999999999999999999999999999999999999999999975
No 12
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=99.89 E-value=4.7e-23 Score=146.40 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=71.2
Q ss_pred CCeEEEEEecCCCCCcEEEEEe--eccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCCC
Q 038717 4 RPYLKLGVKARGCNGLSYTLNY--ADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKG 78 (100)
Q Consensus 4 ~~~lRl~v~~~GC~G~~y~l~l--~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~ 78 (100)
+.+|||+|+++||+|++|.|.| +++++++|.+++.+|++|+||+.+++||+|++|||++++++++|+|+|||++.
T Consensus 21 ~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDyve~~~g~gF~f~NPna~~ 97 (190)
T TIGR03341 21 GTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDFVTDRMGGQLTLKAPNAKM 97 (190)
T ss_pred CceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEEeecCCCceeEEeCCccCC
Confidence 4579999999999999999999 67788999999999999999999999999999999999999999999999974
No 13
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=99.88 E-value=1.1e-22 Score=129.72 Aligned_cols=67 Identities=16% Similarity=0.323 Sum_probs=63.7
Q ss_pred CeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEE
Q 038717 5 PYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFI 72 (100)
Q Consensus 5 ~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~ 72 (100)
.+|||+|+++||+|++|.|.+++ ++++|.+++.+|++|+||+.+++||.|++|||++++.+++|+|+
T Consensus 26 ~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy~~~~~g~gF~~~ 92 (92)
T TIGR01911 26 DVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSIECAEENFGAGFSLD 92 (92)
T ss_pred ceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEEEEecCCCCCcEEeC
Confidence 56999999999999999999976 58999999999999999999999999999999999999999984
No 14
>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein. They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.
Probab=99.79 E-value=2.6e-19 Score=116.50 Aligned_cols=78 Identities=36% Similarity=0.686 Sum_probs=74.8
Q ss_pred EEEEEecCC--------CC-CcEEEEEeeccc-cccCceeEeCCEEEEECccchhhc-CCcEEEEEeCCCCceEEEECCC
Q 038717 7 LKLGVKARG--------CN-GLSYTLNYADER-AKFDELVEDKGVKILIDPKALMHV-IGTKMDFVDDKLRSEFVFINPN 75 (100)
Q Consensus 7 lRl~v~~~G--------C~-G~~y~l~l~~~~-~~~D~v~~~~gi~v~id~~~~~~L-~g~~IDy~~~~~~~gF~i~nP~ 75 (100)
|||++..+| |+ |++|.|.+++++ .+.|++++.++++|+|++.+++|| ++++|||.++..+.+|++.||+
T Consensus 24 irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~~~~l~~~~~iD~~~~~~~~~f~~~~~~ 103 (112)
T PF01521_consen 24 IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYSLWYLDEGLTIDYVEDLGGFGFKSDNPN 103 (112)
T ss_dssp EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGGHHHH-TTEEEEEEEETTEEEEEEETTT
T ss_pred EEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccHhhhhhCCCEEEEEEccCccEEEECCCC
Confidence 999999998 99 999999998877 899999999999999999999999 9999999999999999999999
Q ss_pred CCCCCCCCC
Q 038717 76 SKGQCGCGE 84 (100)
Q Consensus 76 ~~~~C~CG~ 84 (100)
..+.|+||+
T Consensus 104 ~~~~~~~~~ 112 (112)
T PF01521_consen 104 LDSNCGCGD 112 (112)
T ss_dssp EEEEECECE
T ss_pred cCceeccCC
Confidence 999999984
No 15
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.88 E-value=6.4e-09 Score=65.68 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=57.0
Q ss_pred CCCCeEEEEEecCCCC----CcEEEEEeeccccccCceeEeCCEEEEECccchhhcCC--cEEEEEeCCCCceEEE
Q 038717 2 RQRPYLKLGVKARGCN----GLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIG--TKMDFVDDKLRSEFVF 71 (100)
Q Consensus 2 ~~~~~lRl~v~~~GC~----G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g--~~IDy~~~~~~~gF~i 71 (100)
+++..||++|+-|||+ ||+.+++.+ .|++--...+.+|++++|..+.++|+++ ++|||+.+.....|+.
T Consensus 20 ~~g~~vrffvRyGG~~~~~~GFS~gv~~e-~PkE~g~~q~~Dgltffiee~DlWYF~d~d~~v~y~~~~Dei~fs~ 94 (95)
T COG4841 20 EEGNKVRFFVRYGGCSSLQQGFSLGVAKE-VPKEIGYKQEYDGLTFFIEEKDLWYFDDHDLKVDYSPDTDEISFSY 94 (95)
T ss_pred CCCCEEEEEEEEcCcccccCCcceeeecc-CchhhchheeecCeEEEEecCceEEEcCCcEEEeccCCCCcceeec
Confidence 4678899999999998 666766663 4667556667999999999999999999 9999999877666653
No 16
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=93.69 E-value=0.5 Score=30.30 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=47.0
Q ss_pred EEecCCCCCcEEEEEeecc---ccccCcee-EeCCEEEEECccchhhcCCc--EEEEEeCCCCceEEEECCCCC
Q 038717 10 GVKARGCNGLSYTLNYADE---RAKFDELV-EDKGVKILIDPKALMHVIGT--KMDFVDDKLRSEFVFINPNSK 77 (100)
Q Consensus 10 ~v~~~GC~G~~y~l~l~~~---~~~~D~v~-~~~gi~v~id~~~~~~L~g~--~IDy~~~~~~~gF~i~nP~~~ 77 (100)
+-.++||..-+-=|-+... ..+.|+.+ +..|++|+|.++..+|.+.+ +||-++ ..+++|.+.+|...
T Consensus 15 FhQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~-GrG~~FSLE~~~G~ 87 (95)
T PF05610_consen 15 FHQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVP-GRGGGFSLEAPEGK 87 (95)
T ss_pred EEeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEe-cCCCeeeccCCCCc
Confidence 4467888744434444311 23567655 68999999999999998875 678765 45789999998754
No 17
>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.75 E-value=0.19 Score=32.84 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=40.3
Q ss_pred CeEEEEEecCCCCC---cEEEEEeeccccccCceeEeCCEEEEECccch-hhcCCcEEEEEeCC
Q 038717 5 PYLKLGVKARGCNG---LSYTLNYADERAKFDELVEDKGVKILIDPKAL-MHVIGTKMDFVDDK 64 (100)
Q Consensus 5 ~~lRl~v~~~GC~G---~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~-~~L~g~~IDy~~~~ 64 (100)
..||....+-+|.+ +.|+|.- +.+..|..++.++.+|+|-.-.. -+=+.++|||.+..
T Consensus 25 ~hl~ydtEgc~Ca~SGi~t~rlva--e~tg~d~~idsn~gPiyik~~~~~Ff~D~mtidyN~~~ 86 (114)
T COG4918 25 DHLLYDTEGCACAGSGISTYRLVA--EETGFDASIDSNFGPIYIKDYGSYFFQDEMTIDYNPSY 86 (114)
T ss_pred ceEEEeccccccccCCcceEEEEE--eccCcccccccCCCcEEEEecceeEecceeeeecCCcc
Confidence 44565555666665 4666655 44568888999999999965544 55567899998753
No 18
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=76.99 E-value=2.3 Score=28.00 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=24.9
Q ss_pred CccchhhcCCcEEEEEeCCCCceEEEECCCCCCCCCCCCCcccCC
Q 038717 46 DPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTS 90 (100)
Q Consensus 46 d~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~~C~CG~Sf~~~~ 90 (100)
+|..+..|+|-||||.+...+ ||+..-.|. |..|-++.
T Consensus 45 ~P~e~~qldGyTvDy~~~~~~------~~~~~~~~~-gg~~ff~a 82 (117)
T cd01234 45 EPTEFIQLDGYTVDYMPESDP------DPNSELSLQ-GGRHFFNA 82 (117)
T ss_pred CchhheeecceEEeccCCCCC------Ccccccccc-cchhhhhe
Confidence 566678899999999965432 566666666 43444443
No 19
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.14 E-value=23 Score=23.04 Aligned_cols=67 Identities=21% Similarity=0.186 Sum_probs=42.3
Q ss_pred EEEecCCCCCcEEEEEeecc---ccccCcee-EeCCEEEEECccchhhcC--CcEEEEEeCCCCceEEEECCCC
Q 038717 9 LGVKARGCNGLSYTLNYADE---RAKFDELV-EDKGVKILIDPKALMHVI--GTKMDFVDDKLRSEFVFINPNS 76 (100)
Q Consensus 9 l~v~~~GC~G~~y~l~l~~~---~~~~D~v~-~~~gi~v~id~~~~~~L~--g~~IDy~~~~~~~gF~i~nP~~ 76 (100)
++-.++||..=+--|-+... ..+.|+.+ +.+|++|+|.....++-+ .+.||-+. .-++.|.+.|-..
T Consensus 28 mFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKHTqLIIDVVp-GRGGmFSLdng~E 100 (116)
T COG3564 28 MFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKHTQLIIDVVP-GRGGMFSLDNGRE 100 (116)
T ss_pred EEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhccEEEEEEec-CCCceeEccCCcc
Confidence 34467888633333333211 13566655 689999999888775554 56788775 3477899987443
No 20
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=65.41 E-value=6.8 Score=30.02 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=35.0
Q ss_pred eCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCC
Q 038717 38 DKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNS 76 (100)
Q Consensus 38 ~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~ 76 (100)
.++++++|+.---+.|++...-..+..++.||+|.|||-
T Consensus 114 e~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNC 152 (361)
T KOG4777|consen 114 EDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNC 152 (361)
T ss_pred CCCCceEecccCHHHhhhheeccccCCCCCceEEecCCC
Confidence 468999999888899999999999999999999999884
No 21
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.43 E-value=5.4 Score=27.29 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=14.6
Q ss_pred eEEEECCCCC-CCCCCCCCcc
Q 038717 68 EFVFINPNSK-GQCGCGESFM 87 (100)
Q Consensus 68 gF~i~nP~~~-~~C~CG~Sf~ 87 (100)
-|+...|..+ -.|.||.||.
T Consensus 60 lfi~qs~~~rv~rcecghsf~ 80 (165)
T COG4647 60 LFICQSAQKRVIRCECGHSFG 80 (165)
T ss_pred EEEEecccccEEEEecccccc
Confidence 4666665554 5899999995
No 22
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=49.46 E-value=9.7 Score=18.52 Aligned_cols=14 Identities=43% Similarity=0.890 Sum_probs=10.2
Q ss_pred CCCCCCCC-CCCCcc
Q 038717 74 PNSKGQCG-CGESFM 87 (100)
Q Consensus 74 P~~~~~C~-CG~Sf~ 87 (100)
|..-..|. ||.+|.
T Consensus 11 ~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 11 PESAKFCPHCGYDFE 25 (26)
T ss_pred hhhcCcCCCCCCCCc
Confidence 44456886 999885
No 23
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=39.90 E-value=22 Score=21.81 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCcEEEEEeeccccccCceeEeCCEEEEECccc
Q 038717 17 NGLSYTLNYADERAKFDELVEDKGVKILIDPKA 49 (100)
Q Consensus 17 ~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~ 49 (100)
.|+.|.+....-+..=|+++....+-|+||---
T Consensus 34 ~G~RyR~~~~~lpG~PDiv~~~~k~aIFVdGCF 66 (75)
T PF03852_consen 34 LGLRYRLNRKDLPGKPDIVFPKYKIAIFVDGCF 66 (75)
T ss_dssp TT--EEES-TTSTT--SEEEGGGTEEEEEE-TT
T ss_pred cCCEEEEccCcCCCCCCEEECCCCEEEEEecce
Confidence 378898888767777899999999999987543
No 24
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=37.01 E-value=16 Score=23.82 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=13.9
Q ss_pred CCCC-CCCCcccCCCCCCc
Q 038717 78 GQCG-CGESFMTTSSSGAS 95 (100)
Q Consensus 78 ~~C~-CG~Sf~~~~~~~~~ 95 (100)
-.|+ ||-||...-+++..
T Consensus 47 ~~Cg~CGls~e~ev~~l~~ 65 (104)
T COG4888 47 AVCGNCGLSFECEVPELSE 65 (104)
T ss_pred EEcccCcceEEEecccccc
Confidence 4786 99999988777653
No 25
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=36.66 E-value=12 Score=19.48 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=14.2
Q ss_pred CC-CCCCCcccCCCCCCccC
Q 038717 79 QC-GCGESFMTTSSSGASKQ 97 (100)
Q Consensus 79 ~C-~CG~Sf~~~~~~~~~~~ 97 (100)
.| .|+..|..++++.+.+.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~ 23 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGG 23 (37)
T ss_pred ECCCCCceEEcCHHHcccCC
Confidence 46 69999999888766443
No 26
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=35.11 E-value=77 Score=24.76 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=35.9
Q ss_pred CCCeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccc--------hhhcCCcEEEEEeCCCCceEEEE
Q 038717 3 QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKA--------LMHVIGTKMDFVDDKLRSEFVFI 72 (100)
Q Consensus 3 ~~~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~--------~~~L~g~~IDy~~~~~~~gF~i~ 72 (100)
....|++.|..+-..+. .+.+..+.++.+-+. ..++.|++++.. ..+....+|++.+.+.+.++++.
T Consensus 200 ~kkil~v~V~~g~~~~~--ki~f~geadea~g~~-pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~ 274 (337)
T KOG0712|consen 200 EKKILEVHVEPGMPHGQ--KITFKGEADEAPGTK-PGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWE 274 (337)
T ss_pred hhheeeccccCCCcccc--eeeeeeeeeecCCCc-CccEEEEecccccccceecccccceeeecchhhccccceEEEE
Confidence 45667888876665543 344433332222111 445555555544 44555557777777666666555
No 27
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=34.27 E-value=21 Score=22.35 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=20.3
Q ss_pred cccCceeEeCCEEEEECccchhhcCCc
Q 038717 30 AKFDELVEDKGVKILIDPKALMHVIGT 56 (100)
Q Consensus 30 ~~~D~v~~~~gi~v~id~~~~~~L~g~ 56 (100)
+++|.+...||.+|--+.....+|.+.
T Consensus 41 ~~GD~I~aInG~~v~~~~~~~~lL~~~ 67 (88)
T PF14685_consen 41 REGDYILAINGQPVTADANPYRLLEGK 67 (88)
T ss_dssp -TT-EEEEETTEE-BTTB-HHHHHHTT
T ss_pred CCCCEEEEECCEECCCCCCHHHHhccc
Confidence 578999999999999998888888763
No 28
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=34.22 E-value=51 Score=23.12 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=32.2
Q ss_pred CCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCC
Q 038717 39 KGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSK 77 (100)
Q Consensus 39 ~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~ 77 (100)
.++.|++.+.....+..+.|-|.+...-+||++.+++.+
T Consensus 119 ~~~~v~~~~~D~~~i~~~~l~~~~~~~~GGvil~s~dG~ 157 (185)
T PRK01194 119 EDCIIKVSESDKKKINNAKIKFADIDPYGGILAYSRDGK 157 (185)
T ss_pred CCeEEEEcHHhHHHHHhCceeeCCccccccEEEEeCCCc
Confidence 578899999999899888888886667899999877654
No 29
>COG3369 Zinc finger domain containing protein (CDGSH-type) [Function unknown]
Probab=32.92 E-value=28 Score=21.52 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=14.0
Q ss_pred CCCCCCCCcccCCCCCCcc
Q 038717 78 GQCGCGESFMTTSSSGASK 96 (100)
Q Consensus 78 ~~C~CG~Sf~~~~~~~~~~ 96 (100)
.-|.||.|-+-+-=+|+-|
T Consensus 32 ~LCrCG~S~NKPfCDGtH~ 50 (78)
T COG3369 32 ALCRCGHSENKPFCDGTHK 50 (78)
T ss_pred EEEeccCcCCCCccCCccc
Confidence 4799999987766666544
No 30
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=32.23 E-value=42 Score=22.48 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=30.9
Q ss_pred EEEEEeeccccccCceeEeCCEEEE---ECccchhhcCCcEEEEEeCCC--CceEEEE-CCCC
Q 038717 20 SYTLNYADERAKFDELVEDKGVKIL---IDPKALMHVIGTKMDFVDDKL--RSEFVFI-NPNS 76 (100)
Q Consensus 20 ~y~l~l~~~~~~~D~v~~~~gi~v~---id~~~~~~L~g~~IDy~~~~~--~~gF~i~-nP~~ 76 (100)
+|-+-|. -.+.++..+. .+.|. -+.....--...+|||..... ...|+|. +|..
T Consensus 50 qyyVpF~-V~N~gg~TAa--sV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~ 109 (122)
T TIGR02588 50 QYYVPFA-IHNLGGTTAA--AVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRN 109 (122)
T ss_pred EEEEEEE-EEeCCCcEEE--EEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCccc
Confidence 5666663 2334554433 22222 223334556788999998765 5789995 5654
No 31
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=30.67 E-value=79 Score=23.51 Aligned_cols=37 Identities=14% Similarity=0.336 Sum_probs=27.9
Q ss_pred EEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEEC
Q 038717 7 LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILID 46 (100)
Q Consensus 7 lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id 46 (100)
-|+.+.-.+|+- .+.+...|+.+|.|++..|++=+.+
T Consensus 76 YRf~I~C~~C~n---~i~~RTDPkN~~YV~EsGg~R~i~p 112 (272)
T COG5134 76 YRFSIKCHLCSN---PIDVRTDPKNTEYVVESGGRRKIEP 112 (272)
T ss_pred EEEEEEccCCCC---ceeeecCCCCceEEEecCceeecCc
Confidence 588888888873 4455556888999999999985543
No 32
>PF10008 DUF2251: Uncharacterized protein conserved in bacteria (DUF2251); InterPro: IPR014449 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.18 E-value=1.5e+02 Score=19.00 Aligned_cols=80 Identities=13% Similarity=0.206 Sum_probs=47.5
Q ss_pred CCeEEEEEecCCCCCcEEEEEeeccccccCceeEeCCEEEEECccchhhcCCcEEEEEeCCCCceEEEEC-CCC----CC
Q 038717 4 RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFIN-PNS----KG 78 (100)
Q Consensus 4 ~~~lRl~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~n-P~~----~~ 78 (100)
...+.+....-|-.|+=|.|... ++..-|+..=-|--+=+-....-=.-+.|=|.++...-.+.|++ |.+ ..
T Consensus 9 ~~~~~vVFEDdGeTGYFYa~d~~---qe~~~I~DAL~IYNv~~v~~~~~~~~~~I~Wsedg~~a~L~Ingy~hA~FDF~~ 85 (97)
T PF10008_consen 9 HGPYAVVFEDDGETGYFYACDTS---QEEQPIVDALHIYNVEDVSDKDEPRIVSICWSEDGQKAALLINGYPHAVFDFAN 85 (97)
T ss_pred CCCEEEEEEeCCCcEEEEEEecc---ccCCceeeEEEEEeeccccCCCCCceEEEEEcccccEEEEEECCcEEEEEEecc
Confidence 44566777778888999988764 23443333211111111223344567889999988888888865 665 25
Q ss_pred CCC-CCCCc
Q 038717 79 QCG-CGESF 86 (100)
Q Consensus 79 ~C~-CG~Sf 86 (100)
.+| |-+.|
T Consensus 86 ~~Gycr~~f 94 (97)
T PF10008_consen 86 HVGYCRTNF 94 (97)
T ss_pred cccccCCCC
Confidence 666 55555
No 33
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=28.50 E-value=64 Score=19.08 Aligned_cols=21 Identities=5% Similarity=-0.103 Sum_probs=17.2
Q ss_pred cccCceeEeCCEEEEECccch
Q 038717 30 AKFDELVEDKGVKILIDPKAL 50 (100)
Q Consensus 30 ~~~D~v~~~~gi~v~id~~~~ 50 (100)
-++|+.++.+|.+++++=.+.
T Consensus 30 LPGDi~i~~~~~~fyfPi~s~ 50 (64)
T PF11146_consen 30 LPGDIRIRRGNFTFYFPITSS 50 (64)
T ss_pred CCccEEEEECCEEEEEehHHH
Confidence 479999999999999875443
No 34
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=28.21 E-value=45 Score=17.80 Aligned_cols=8 Identities=38% Similarity=1.207 Sum_probs=5.8
Q ss_pred CCCCCCCC
Q 038717 77 KGQCGCGE 84 (100)
Q Consensus 77 ~~~C~CG~ 84 (100)
..+|+|=.
T Consensus 18 ~tsCgCt~ 25 (45)
T PF07610_consen 18 QTSCGCTT 25 (45)
T ss_pred eEccCCEE
Confidence 46899964
No 35
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=25.75 E-value=81 Score=18.39 Aligned_cols=16 Identities=19% Similarity=0.050 Sum_probs=13.7
Q ss_pred ccccCceeEeCCEEEE
Q 038717 29 RAKFDELVEDKGVKIL 44 (100)
Q Consensus 29 ~~~~D~v~~~~gi~v~ 44 (100)
.+.+|+++..+|.++.
T Consensus 28 L~~GDiI~~Ing~~v~ 43 (79)
T cd00991 28 LHTGDVIYSINGTPIT 43 (79)
T ss_pred CCCCCEEEEECCEEcC
Confidence 3579999999999886
No 36
>COG3269 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=25.35 E-value=1.6e+02 Score=17.97 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=25.9
Q ss_pred CcEEEEEeeccccccCceeEeCCEEEEECccch
Q 038717 18 GLSYTLNYADERAKFDELVEDKGVKILIDPKAL 50 (100)
Q Consensus 18 G~~y~l~l~~~~~~~D~v~~~~gi~v~id~~~~ 50 (100)
|=.|.+.+.+--..+|-+...+|+.|+++....
T Consensus 16 Ge~y~V~I~d~g~~GDGiarveGfvVFVp~a~~ 48 (73)
T COG3269 16 GETYEVEIEDVGDQGDGIARVEGFVVFVPGAEV 48 (73)
T ss_pred CCEEEEEEEEeccCCCceEEEEEEEEEeCCCCC
Confidence 347888887666778888888899999987654
No 37
>PHA02768 hypothetical protein; Provisional
Probab=23.52 E-value=22 Score=20.47 Aligned_cols=11 Identities=36% Similarity=1.180 Sum_probs=7.2
Q ss_pred CCC-CCCCcccC
Q 038717 79 QCG-CGESFMTT 89 (100)
Q Consensus 79 ~C~-CG~Sf~~~ 89 (100)
.|. ||+.|+..
T Consensus 7 ~C~~CGK~Fs~~ 18 (55)
T PHA02768 7 ECPICGEIYIKR 18 (55)
T ss_pred CcchhCCeeccH
Confidence 564 88777654
No 38
>TIGR00105 L31 ribosomal protein L31. This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc.
Probab=22.71 E-value=31 Score=20.54 Aligned_cols=16 Identities=44% Similarity=0.910 Sum_probs=12.3
Q ss_pred CCCCCCCcccCCCCCC
Q 038717 79 QCGCGESFMTTSSSGA 94 (100)
Q Consensus 79 ~C~CG~Sf~~~~~~~~ 94 (100)
.|.||+.|....+..+
T Consensus 15 ~~s~g~~f~~~ST~~~ 30 (68)
T TIGR00105 15 TCTCGNVFTTRSTWGK 30 (68)
T ss_pred EECCCCEEEEeeecCC
Confidence 4899999987776644
No 39
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=22.32 E-value=78 Score=16.63 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=18.1
Q ss_pred eEEEECCCCCCCCCCCCCcccCCCCCCcc
Q 038717 68 EFVFINPNSKGQCGCGESFMTTSSSGASK 96 (100)
Q Consensus 68 gF~i~nP~~~~~C~CG~Sf~~~~~~~~~~ 96 (100)
.|.+.......-|.||.|=+.+-=+|.-+
T Consensus 5 ~~~~e~~~~~~lC~C~~S~~~PfCDGsH~ 33 (38)
T smart00704 5 EVEVEKREKYALCRCGRSKNFPYCDGSHK 33 (38)
T ss_pred EEEecCCCEEEEeeCCCCCCCCccCCccc
Confidence 45554433446899999977665555443
No 40
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=21.56 E-value=27 Score=16.46 Aligned_cols=10 Identities=50% Similarity=1.149 Sum_probs=7.1
Q ss_pred CCCC-CCCCcc
Q 038717 78 GQCG-CGESFM 87 (100)
Q Consensus 78 ~~C~-CG~Sf~ 87 (100)
-.|. |+++|.
T Consensus 15 ~~C~~C~k~F~ 25 (26)
T PF13465_consen 15 YKCPYCGKSFS 25 (26)
T ss_dssp EEESSSSEEES
T ss_pred CCCCCCcCeeC
Confidence 4674 888885
No 41
>PF09360 zf-CDGSH: Iron-binding zinc finger CDGSH type; InterPro: IPR018967 This entry represents iron-sulphur domain containing proteins that have a CDGSH sequence motif (although the Ser residue can also be an Ala or Thr), and is found in proteins from a wide range of organisms with the exception of fungi. The CDGSH-type domain binds a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family []. CDGSH-type domains are found in mitoNEET, an iron-containing integral protein of the outer mitochondrian membrane (OMM). MitoNEET forms a dimeric structure with a NEET fold, and contains two domains: a beta-cap region and a cluster-binding domain that coordinated two acid-labile 2Fe-2S clusters (one bound to each protomer) []. The CDGSH iron-sulphur domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by a more N-terminal domain found in higher vertebrates, (IPR019610 from INTERPRO) [, ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM. ; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 3TBO_A 3FNV_B 3TBM_B 3TBN_A 3S2R_A 3S2Q_A 3LPQ_A 2QH7_A 3EW0_A 2R13_A ....
Probab=21.36 E-value=48 Score=17.38 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=6.4
Q ss_pred CCCCCCCCcccC
Q 038717 78 GQCGCGESFMTT 89 (100)
Q Consensus 78 ~~C~CG~Sf~~~ 89 (100)
.-|.||.|=+.+
T Consensus 20 ~lC~Cg~S~~~P 31 (38)
T PF09360_consen 20 ALCRCGKSKNKP 31 (38)
T ss_dssp EE-SSS--TTTT
T ss_pred EEecCCCCCCCC
Confidence 589999986554
No 42
>PF06905 FAIM1: Fas apoptotic inhibitory molecule (FAIM1); InterPro: IPR010695 This family consists of several fas apoptotic inhibitory molecule (FAIM) proteins. FAIM expression is upregulated in B cells by anti-Ig treatment that induces Fas-resistance, and overexpression of FAIM diminishes sensitivity to Fas-mediated apoptosis of B and non-B cell lines. FAIM is highly evolutionarily conserved and is widely expressed in murine tissues, suggesting that FAIM plays an important role in cellular physiology [].; GO: 0043066 negative regulation of apoptosis; PDB: 3MX7_A 2KW1_A 2KD2_A.
Probab=21.00 E-value=2.9e+02 Score=19.53 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=37.4
Q ss_pred EEEEecCCCCCcEEEEEeeccccc----c------CceeEeCC--EEEEECccch-hhcCCcEEEEEe----CCCCceEE
Q 038717 8 KLGVKARGCNGLSYTLNYADERAK----F------DELVEDKG--VKILIDPKAL-MHVIGTKMDFVD----DKLRSEFV 70 (100)
Q Consensus 8 Rl~v~~~GC~G~~y~l~l~~~~~~----~------D~v~~~~g--i~v~id~~~~-~~L~g~~IDy~~----~~~~~gF~ 70 (100)
+|.+...+.-.|+|.|.++..+-+ . -.++..+| .+|++|++.+ .+.+|-.|+-.. +.....|.
T Consensus 65 ~I~I~~~~g~~YeYsL~VdGksl~ky~e~~~k~~~tW~~~i~G~~~RIvLdk~t~~vwvnG~~iet~~eFvd~Gtet~F~ 144 (177)
T PF06905_consen 65 EINIEAVSGFAYEYSLEVDGKSLKKYKEEQSKKFNTWELNIDGQEYRIVLDKDTMDVWVNGEKIETEGEFVDDGTETHFE 144 (177)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEE--SSTTTTEEEEEEEETTEEEEEEEETTTTEEEETTCEE--EEEEETTCEEEEEE
T ss_pred EEEEEecCCceEEEEEEECCEEHHHHHHHHhhhheeEEEecCCCEEEEEEEcceEEEEECCEEccccceecCCCcEEEEE
Confidence 344443333567788877654311 1 12445566 6899999966 678888886443 33345566
Q ss_pred EE
Q 038717 71 FI 72 (100)
Q Consensus 71 i~ 72 (100)
+.
T Consensus 145 l~ 146 (177)
T PF06905_consen 145 LG 146 (177)
T ss_dssp ET
T ss_pred EC
Confidence 63
No 43
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=20.91 E-value=3.1e+02 Score=19.30 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=21.9
Q ss_pred CEEEEECccch-hhcCCcEEE----EEeCCCCceEEEE
Q 038717 40 GVKILIDPKAL-MHVIGTKMD----FVDDKLRSEFVFI 72 (100)
Q Consensus 40 gi~v~id~~~~-~~L~g~~ID----y~~~~~~~gF~i~ 72 (100)
.++|+++++++ .|.+|-.|+ |+.+.....|.+-
T Consensus 106 ~~RivL~kdtm~~w~NG~~l~TageFVd~GT~ThF~lg 143 (187)
T KOG4352|consen 106 EYRIVLKKDTMSLWVNGDELRTAGEFVDGGTDTHFLLG 143 (187)
T ss_pred eEEEEEeccceeeEEcCccccccceeecCCeeEEEEec
Confidence 37888888888 456666665 5555555667764
No 44
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=20.62 E-value=74 Score=21.07 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=27.7
Q ss_pred ccCceeE---eCCEEEEECccchhhcCCcEEEEEeC
Q 038717 31 KFDELVE---DKGVKILIDPKALMHVIGTKMDFVDD 63 (100)
Q Consensus 31 ~~D~v~~---~~gi~v~id~~~~~~L~g~~IDy~~~ 63 (100)
+++.|.+ ..|++|+.-.+.++-|.|..|++...
T Consensus 61 ~~~~I~d~~~M~G~TVFARfk~~~~~~G~~i~~l~~ 96 (118)
T PRK10234 61 EQQRVVDTLFMKGLTVFARPQKIPALTGLHLGDLQP 96 (118)
T ss_pred CCCcEEeeEEEccEEEEecccchhhhcCCcHHHcCH
Confidence 4666654 68999999999999999999997754
No 45
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=20.58 E-value=1.3e+02 Score=25.57 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=27.6
Q ss_pred eCCEEEEECccchhhcCCcEEEEEeCCCCceEEEECCCCCCCCCCCCCc
Q 038717 38 DKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 86 (100)
Q Consensus 38 ~~gi~v~id~~~~~~L~g~~IDy~~~~~~~gF~i~nP~~~~~C~CG~Sf 86 (100)
.+.|+|+.+.. ...+..++++-. .|....|..||. ||+|.
T Consensus 484 lenIpvItP~~-~vvv~~Ltf~i~---~G~hLLItGPNG-----CGKSS 523 (728)
T KOG0064|consen 484 LENIPVITPAG-DVLVPKLTFQIE---PGMHLLITGPNG-----CGKSS 523 (728)
T ss_pred EecCceeccCc-ceeecceeEEec---CCceEEEECCCC-----ccHHH
Confidence 34455555444 447777887763 578889999996 99874
No 46
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.50 E-value=31 Score=17.81 Aligned_cols=18 Identities=17% Similarity=0.468 Sum_probs=13.0
Q ss_pred CC-CCCCCcccCCCCCCcc
Q 038717 79 QC-GCGESFMTTSSSGASK 96 (100)
Q Consensus 79 ~C-~CG~Sf~~~~~~~~~~ 96 (100)
.| .|+..|.+++.+.+.+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~ 22 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPK 22 (36)
T ss_pred ECCCCCCEEeCCHHHCCCC
Confidence 35 4888888888776643
Done!