BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038722
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 101 NSCEDAYDLLQTPVLKKILLAGILLDTHNLDSYSSLSTSRDAEAVQLLSIGSSP 154
+ C AYD Q P LKK LL G D+ S L ++ + + G SP
Sbjct: 510 SQCXVAYDETQKPSLKKALLLG--------DAISDLPKVQNHQPNDVXEYGGSP 555
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 101 NSCEDAYDLLQTPVLKKILLAGILLDTHNLDSYSSLSTSRDAEAVQLLSIGSSPN 155
+ C AYD Q P LKK LL G D+ S L ++ + ++ G SP
Sbjct: 510 SQCMVAYDETQKPSLKKALLLG--------DAISDLPKVQNHQPNDVMEYGGSPK 556
>pdb|4AKV|A Chain A, Crystal Structure Of Human Sorting Nexin 33 (Snx33)
pdb|4AKV|B Chain B, Crystal Structure Of Human Sorting Nexin 33 (Snx33)
Length = 386
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 129 NLDSYSSLSTSRDAEAVQLLSIGSS------PNYRNNLFDQYGSVLEAMRHSYGMPP 179
+D++ + S D +QL ++ S +R F + GS +A+ HS+ M P
Sbjct: 189 RVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKE-FQKLGSAFQAISHSFQMDP 244
>pdb|4H40|A Chain A, Crystal Structure Of A Putative Cell Adhesion Protein
(Bf2867) From Bacteroides Fragilis Nctc 9343 At 2.57 A
Resolution
pdb|4H40|B Chain B, Crystal Structure Of A Putative Cell Adhesion Protein
(Bf2867) From Bacteroides Fragilis Nctc 9343 At 2.57 A
Resolution
Length = 327
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 23 DGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLFADEVD 65
DG + V+ N+ + Y A+L + G +SLL+ EVD
Sbjct: 53 DGSTIRLVVYDDAKNLLEEYSKAYLVRNAGTSGSSLLYPCEVD 95
>pdb|2KX9|A Chain A, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2KX9|B Chain B, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2XDF|A Chain A, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2XDF|B Chain B, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 52 GLDANSLLFADEVDLEILLMTGQLSIVVVGQDVLRTNAEVGSQCTILTDNSCEDAYDLLQ 111
G +++ + A ++L ++ TG ++ V D L +A V +Q + N D +Q
Sbjct: 185 GRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDA-VNNQVYVNPTNEVIDKMRAVQ 243
Query: 112 TPV------LKKIL-LAGILLDTHNLDSYSSLSTSRDAEAVQ 146
V L K+ L I LD H ++ +++ T RD E +
Sbjct: 244 EQVASEKAELAKLKDLPAITLDGHQVEVCANIGTVRDVEGAE 285
>pdb|4B8Y|A Chain A, Ferrichrome-bound Fhud2
Length = 277
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 29 PVMNIKRSNMWKHYQAAWLFHHVGLDANSLLFADEVDLEIL 69
P + +NMWK+ +A H V +DA + + D L+ +
Sbjct: 224 PTPGYESTNMWKNLKATKEGHIVKVDAGTYWYNDPYTLDFM 264
>pdb|2L5H|A Chain A, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2L5H|B Chain B, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 26.9 bits (58), Expect = 5.8, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 52 GLDANSLLFADEVDLEILLMTGQLSIVVVGQDVLRTNAEVGSQCTILTDNSCEDAYDLLQ 111
G + + + A ++L ++ TG ++ V D L +A V +Q + N D +Q
Sbjct: 185 GRTSQTSIMARSLELPAIVGTGSVTSQVKNDDYLILDA-VNNQVYVNPTNEVIDKMRAVQ 243
Query: 112 TPV------LKKIL-LAGILLDTHNLDSYSSLSTSRDAEAVQ 146
V L K+ L I LD H ++ +++ T RD E +
Sbjct: 244 EQVASEKAELAKLKDLPAITLDGHQVEVCANIGTVRDVEGAE 285
>pdb|2PA6|A Chain A, Crystal Structure Of Mj0232 From Methanococcus Jannaschii
pdb|2PA6|B Chain B, Crystal Structure Of Mj0232 From Methanococcus Jannaschii
Length = 427
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 23 DGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLFADEVDLE-ILLMTGQLSIVVVG 81
DGY V + R + +Y+A L + + F +E D E ++T +L I +VG
Sbjct: 257 DGYYYVEGKKLTREELLDYYKA--LVDEYPIVSIEDPFHEE-DFEGFAMITKELDIQIVG 313
Query: 82 QDVLRTNAE 90
D+ TN E
Sbjct: 314 DDLFVTNVE 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,461,614
Number of Sequences: 62578
Number of extensions: 203128
Number of successful extensions: 354
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 10
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)