BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038722
(181 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86TP1|PRUNE_HUMAN Protein prune homolog OS=Homo sapiens GN=PRUNE PE=1 SV=2
Length = 453
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 35/169 (20%)
Query: 26 VVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLFADEVDLEILLMTGQLSIVVVGQDVL 85
V VPV+NIKRS + + V + + L+F DE+DL L GQL++++V +L
Sbjct: 51 VFVPVLNIKRSELPLRGDIVFFLQKVHIPESILIFRDEIDLHALYQAGQLTLILVDHHIL 110
Query: 86 RTN--------AE---------------------VGSQCTILTDNSCEDAYDLL--QTPV 114
+ AE VGS T++T+ + A ++L QT
Sbjct: 111 SKSDTALEEAVAEVLDHRPIEPKHCPPCHVSVELVGSCATLVTERILQGAPEILDRQTAA 170
Query: 115 LKKILLAGILLDTHNLDSYSSLSTSRDAEAVQLL-SIGSSPNYRNNLFD 162
L L I+LD N+D +T +D++ V+ L ++ RN++FD
Sbjct: 171 L---LHGTIILDCVNMDLKIGKATPKDSKYVEKLEALFPDLPKRNDIFD 216
>sp|Q5E9Y6|PRUNE_BOVIN Protein prune homolog OS=Bos taurus GN=PRUNE PE=2 SV=1
Length = 453
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 41/194 (21%)
Query: 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLF 60
MV+A+ A+ L + V VPV+NIKRS + + + + + L+F
Sbjct: 32 MVSALALAFYLAKTTEAEE------VFVPVLNIKRSELPLRGDNVFFLQKIHIPESVLIF 85
Query: 61 ADEVDLEILLMTGQLSIVVVGQDVL-RTNAE----------------------------V 91
DE+DL L GQL++++V VL +++A V
Sbjct: 86 RDEIDLHALHQAGQLTLILVDHHVLPKSDAALEEAVAEVLDHRPIDQRHCPPCHVSVELV 145
Query: 92 GSQCTILTDNSCEDAYDLL--QTPVLKKILLAGILLDTHNLDSYSSLSTSRDAEAVQLL- 148
GS T++ + + A ++L QT L L ILLD N+D +T +D+ V+ L
Sbjct: 146 GSCATLVAERILQGAPEILDRQTAAL---LHGTILLDCVNMDLKIGKATLKDSHYVEKLE 202
Query: 149 SIGSSPNYRNNLFD 162
++ RN++FD
Sbjct: 203 ALFPDLPSRNDIFD 216
>sp|Q8BIW1|PRUNE_MOUSE Protein prune homolog OS=Mus musculus GN=Prune PE=2 SV=1
Length = 454
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 41/194 (21%)
Query: 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLF 60
MV+A+ A+ L K + +PV+NIKRS + + V + +L+F
Sbjct: 32 MVSALALAFYL------TKTSEAEDIFIPVLNIKRSELPLRGDNVFFLQEVKIPEPALIF 85
Query: 61 ADEVDLEILLMTGQLSIVVVGQDVL-RTNAE----------------------------V 91
DE+DL L GQL++++V +L +++A V
Sbjct: 86 RDEIDLLALHQAGQLTLILVDHHILPKSDAALEEAVAEVLDHRPIEQKYCPPCHVSVELV 145
Query: 92 GSQCTILTDNSCEDAYDLL--QTPVLKKILLAGILLDTHNLDSYSSLSTSRDAEAV-QLL 148
GS T++T+ + A + L QT L L I+LD N+D+ +T +D++ V +L
Sbjct: 146 GSCATLVTERILQGAPETLDRQTAAL---LHGTIILDCVNMDTNIGKATPKDSKYVEELE 202
Query: 149 SIGSSPNYRNNLFD 162
++ R ++FD
Sbjct: 203 ALFPDLPKRKDIFD 216
>sp|Q6AYG3|PRUNE_RAT Protein prune homolog OS=Rattus norvegicus GN=Prune PE=2 SV=1
Length = 454
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 41/194 (21%)
Query: 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLF 60
MV+A+ A+ L K + +PV+NIKRS + + V + ++L+F
Sbjct: 32 MVSALALAFYL------TKTSEAEDIFIPVLNIKRSELPLRGDNVFFLQEVKIAESALIF 85
Query: 61 ADEVDLEILLMTGQLSIVVVGQDVL-RTNAE----------------------------V 91
DE+DL L GQL++++V +L +++A V
Sbjct: 86 RDEIDLLALHQAGQLTLILVDHHMLPKSDAALEEAVAEVLDHRPIEQKYCPPCHVSVELV 145
Query: 92 GSQCTILTDNSCEDAYDLL--QTPVLKKILLAGILLDTHNLDSYSSLSTSRDAEAVQLL- 148
GS T++ + + A + L QT L L I+LD N+D+ +T +D E V+ L
Sbjct: 146 GSCATLVAERILQGAPETLDRQTAAL---LHGTIILDCVNMDAKIGKATLKDNEYVEKLE 202
Query: 149 SIGSSPNYRNNLFD 162
++ R ++FD
Sbjct: 203 ALFPDLPKRKDIFD 216
>sp|Q52KR3|PRUN2_MOUSE Protein prune homolog 2 OS=Mus musculus GN=Prune2 PE=2 SV=2
Length = 3084
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLF 60
+++A YA+ L+ K G + +PV+NI R+ + ++ + + + +F
Sbjct: 35 LISAFTYAYFLD------KVSPPGVLCLPVLNIPRTEFNYFTETRFILEELNIPESFHIF 88
Query: 61 ADEVDLEILLMTGQLSIVVVGQDVLRTNAEVGSQCTILTDNSCEDAYDLLQTP------V 114
DE++L L G+LSI +VG VL + + N E + L P V
Sbjct: 89 RDEINLHQLNDEGKLSITLVGSHVLGSEDRTLESAVVRVINPGEQSDGELGFPETSSSLV 148
Query: 115 LKKILLAGILLDTHNL 130
LK++L L T L
Sbjct: 149 LKELLREAPELITQQL 164
>sp|Q8WUY3|PRUN2_HUMAN Protein prune homolog 2 OS=Homo sapiens GN=PRUNE2 PE=1 SV=3
Length = 3088
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLF 60
+++ YA+ L+ K G + +PV+NI R+ + ++ + + + +F
Sbjct: 35 LISTFTYAYFLD------KVSPPGVLCLPVLNIPRTEFNYFTETRFILEELNISESFHIF 88
Query: 61 ADEVDLEILLMTGQLSIVVVGQDVLRTNAEVGSQCTILTDNSCEDA 106
DE++L L G+LSI +VG VL + + + N E +
Sbjct: 89 RDEINLHQLNDEGKLSITLVGSSVLASEDKTLESAVVKVINPVEQS 134
>sp|Q7Q6D9|MED24_ANOGA Mediator of RNA polymerase II transcription subunit 24 OS=Anopheles
gambiae GN=MED24 PE=3 SV=4
Length = 1036
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 95 CTILTDNSCEDAYDLLQTPVLKKILLAGILLDTHNLDSYSSLSTSRDAEAVQLLSIGSSP 154
C +LT NS + + K ++G+L + Y+ +T+ + IG +P
Sbjct: 463 CQVLTGNSLDLVLSVASVEGKFKAFISGLL----KCNDYAKQATTAE--------IGKAP 510
Query: 155 NYRNNLFDQYGSVLEAMRHSYG 176
R+ LFD +L ++ SYG
Sbjct: 511 TTRSALFDVSFMILASIAQSYG 532
>sp|B9E909|SYS_MACCJ Serine--tRNA ligase OS=Macrococcus caseolyticus (strain JCSC5402)
GN=serS PE=3 SV=1
Length = 423
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 120 LAGILLDTHNLDSYSSLSTSRDAEAVQLLSIGSSPNYRNNLF 161
L +LDTH + Y + T + A + G P + +LF
Sbjct: 177 LMNFMLDTHRANGYEEMVTPQLVNAASMFGTGQLPKFEEDLF 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,053,079
Number of Sequences: 539616
Number of extensions: 2586978
Number of successful extensions: 5847
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5838
Number of HSP's gapped (non-prelim): 14
length of query: 181
length of database: 191,569,459
effective HSP length: 110
effective length of query: 71
effective length of database: 132,211,699
effective search space: 9387030629
effective search space used: 9387030629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)