Query 038722
Match_columns 181
No_of_seqs 109 out of 696
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:39:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4129 Exopolyphosphatases an 100.0 4E-42 8.6E-47 293.6 11.1 170 1-179 36-248 (377)
2 COG1227 PPX1 Inorganic pyropho 100.0 6.1E-29 1.3E-33 211.5 11.5 162 1-179 17-209 (311)
3 PRK05427 putative manganese-de 99.9 1.8E-24 3.8E-29 185.9 13.2 160 1-179 17-207 (308)
4 PRK14869 putative manganese-de 99.6 2.9E-15 6.2E-20 137.2 10.0 98 77-179 328-444 (546)
5 PF01368 DHH: DHH family; Int 98.9 7.4E-09 1.6E-13 78.3 8.7 110 1-124 21-145 (145)
6 COG0618 Exopolyphosphatase-rel 98.8 8.9E-08 1.9E-12 83.3 12.0 82 75-162 108-198 (332)
7 PRK14538 putative bifunctional 98.6 3.6E-07 7.8E-12 88.0 9.8 72 76-151 471-553 (838)
8 COG3887 Predicted signaling pr 98.3 1E-06 2.2E-11 81.2 6.9 74 76-153 438-523 (655)
9 cd04597 CBS_pair_DRTGG_assoc2 96.6 0.0028 6.1E-08 46.0 3.7 48 1-61 8-55 (113)
10 PRK14869 putative manganese-de 74.3 3.9 8.5E-05 37.7 3.9 46 1-59 18-63 (546)
11 TIGR00644 recJ single-stranded 56.4 1.4E+02 0.0031 27.7 10.4 19 113-131 196-214 (539)
12 PRK11070 ssDNA exonuclease Rec 38.0 1.5E+02 0.0031 28.2 7.5 50 35-86 110-163 (575)
13 PTZ00445 p36-lilke protein; Pr 30.6 11 0.00023 31.3 -1.1 21 45-65 168-188 (219)
14 PF10606 GluR_Homer-bdg: Homer 21.6 31 0.00067 22.0 0.0 14 167-180 36-49 (51)
No 1
>KOG4129 consensus Exopolyphosphatases and related proteins [Energy production and conversion]
Probab=100.00 E-value=4e-42 Score=293.61 Aligned_cols=170 Identities=24% Similarity=0.383 Sum_probs=153.7
Q ss_pred CchHHHHHHHhcccccccCCCCCCceEEEeeeccccCCCCchHHHHHHHHcCCCCCCeeeccccchHhhhcCCCeEEEEe
Q 038722 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLFADEVDLEILLMTGQLSIVVV 80 (181)
Q Consensus 1 ivSai~~Ay~~~~~~~~~~~~~~~~~~vPvini~r~d~~lr~E~~~ll~~~~I~~~~Lif~dd~~~~~l~~~~~~~~~LV 80 (181)
++|||+|||++.+.+ ..+..+||++||||.|+++|+|+.|+|++++|+++.|+|+||++...+...++++++||
T Consensus 36 ~iSaltyAy~l~~~~------~~e~~~vPilnIpR~el~lr~ei~~vl~kl~Ise~~l~FrdDI~~~~~~~~g~l~~~LV 109 (377)
T KOG4129|consen 36 FISALTYAYCLDKVH------RKEVFMVPILNIPRFELNLRTEIFYVLEKLHISESALIFRDDIELLELNISGKLKLYLV 109 (377)
T ss_pred HHHHHHHHHHHHHhc------cCCceEEEEeccccccCCcchhHHHHHHHcCCChHHeeehhhhhcccccccCCceEEEe
Confidence 379999999999743 25688999999999999999999999999999999999999999998888888999999
Q ss_pred cCCCCCC------------------------------CccCcchHHHHHHHHhhhccCCCCcHH--HHHHHHhhHHhhhc
Q 038722 81 GQDVLRT------------------------------NAEVGSQCTILTDNSCEDAYDLLQTPV--LKKILLAGILLDTH 128 (181)
Q Consensus 81 DHn~l~~------------------------------~~~vGSc~TLV~~~~~~~~~~~l~~~~--~a~LLl~aIL~DT~ 128 (181)
|||+++. ++.+|||||||++||.++.++..+ .+ +|.||+|+||+||+
T Consensus 110 Dhn~l~~~d~~~e~~~i~~IiDhhp~e~~~~~a~~~~Ie~~gScsTLV~~y~l~~~~~~~~-~~~n~A~LL~g~ILiDt~ 188 (377)
T KOG4129|consen 110 DHNVLPSKDLVNEIAVIEGIIDHHPDEDKHLPACPRIIELSGSCSTLVSRYILEELQELNT-RQANLARLLLGPILIDTG 188 (377)
T ss_pred cCCCCccccccccccceeeeeccCcccccCCCccceeEEeecchHHHHHHHHHhhcchhhh-HHHHHHHHhhcceEEecc
Confidence 9999872 167899999999999999887543 45 99999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCC--CCchHHHHHHHh---------cCHHHHHHhhcCCCC
Q 038722 129 NLDSYSSLSTSRDAEAVQLLSIGS--SPNYRNNLFDQY---------GSVLEAMRHSYGMPP 179 (181)
Q Consensus 129 nl~~~~~k~t~~D~~~~~~L~~~~--~~~~r~~lf~~L---------ls~~dlLrrDyK~~~ 179 (181)
||.+ +|++++|.++++.|++.. +.+.|+++|++| +|+.|+|||||||+.
T Consensus 189 nm~~--ek~s~kd~~~v~kLe~~~p~~l~~r~~~fd~Lk~ak~d~sgls~~~iLrKD~K~~~ 248 (377)
T KOG4129|consen 189 NMRK--EKTSPKDVEIVKKLEELFPVKLPERSEFFDELKSAKFDISGLSTDDILRKDLKQFH 248 (377)
T ss_pred cccc--ccCChhHHHHHHHHHHHcCCCchhHHHHHHHHHHhhcccccCcHHHHHHHHHHHhc
Confidence 9995 799999999999998874 467999999999 999999999999974
No 2
>COG1227 PPX1 Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion]
Probab=99.96 E-value=6.1e-29 Score=211.46 Aligned_cols=162 Identities=22% Similarity=0.278 Sum_probs=132.9
Q ss_pred CchHHHHHHHhcccccccCCCCCCceEEEeeeccccCCCCchHHHHHHHHcCCCCCCeeeccccc-hHhhhcCC------
Q 038722 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLFADEVD-LEILLMTG------ 73 (181)
Q Consensus 1 ivSai~~Ay~~~~~~~~~~~~~~~~~~vPvini~r~d~~lr~E~~~ll~~~~I~~~~Lif~dd~~-~~~l~~~~------ 73 (181)
|+|||+|||+++.. +...+|...+++.+. |+.|+|+.+|.+.+.|+....-+ ...+.+|+
T Consensus 17 i~Sai~~ay~~~~~---------~~~~~~~~~l~~~~~----et~fvl~~f~~~~p~l~~~~~~~~~viLVDhNe~~qs~ 83 (311)
T COG1227 17 IASAIVYAYLLNAY---------GEFEAKAVRLGEPNL----ETAFVLDYFGVEAPKLVESVKGEKKVILVDHNEFQQSV 83 (311)
T ss_pred HHHHHHHHHHHHHh---------hhccCCceecCCCCh----hHHHHHHHhccCCchhhhcccCCCcEEEEeccccccCc
Confidence 58999999999852 124667776666643 99999999999998777543322 22233332
Q ss_pred ----CeE-EEEecCCCCCC----------CccCcchHHHHHHHHhhhccCCCCcHHHHHHHHhhHHhhhcCCCCCCCCCC
Q 038722 74 ----QLS-IVVVGQDVLRT----------NAEVGSQCTILTDNSCEDAYDLLQTPVLKKILLAGILLDTHNLDSYSSLST 138 (181)
Q Consensus 74 ----~~~-~~LVDHn~l~~----------~~~vGSc~TLV~~~~~~~~~~~l~~~~~a~LLl~aIL~DT~nl~~~~~k~t 138 (181)
+.+ +.+||||++.+ .+|||||+|++.++|.+...++ ++++|.|||+|||+||.+|+ +++||
T Consensus 84 ~~~~d~~I~~IIDHHr~~~~~t~~p~~~~~epVGctsTIv~~~~~e~~~~~--~~~iA~LlLsaIlsDTl~fk--spTtt 159 (311)
T COG1227 84 DDIEDAEILGIIDHHRLADFETAAPLYIRNEPVGCTSTIVYRLFKEDGIEI--EKEIAGLLLSAILSDTLLFK--SPTTT 159 (311)
T ss_pred cccccceEEEEeeeeeecCcccCCCcEEEecCCchHHHHHHHHHHHhcCcc--chhHHHHHHHHHhhhhhccc--CCCcc
Confidence 343 58889999874 4999999999999999888775 58999999999999999999 69999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHh---------cCHHHHHHhhcCCCC
Q 038722 139 SRDAEAVQLLSIGSSPNYRNNLFDQY---------GSVLEAMRHSYGMPP 179 (181)
Q Consensus 139 ~~D~~~~~~L~~~~~~~~r~~lf~~L---------ls~~dlLrrDyK~~~ 179 (181)
++|.++++.|...++..++++|+.+| +|+.+||+||||+|+
T Consensus 160 ~~D~~~a~~La~lAgv~dlekf~~~ml~a~~~~~~~s~~eLl~~D~K~F~ 209 (311)
T COG1227 160 DTDVDIAKELADLAGVKDLEKFGKELLKAGTDLSGKSVEELLKKDLKAFN 209 (311)
T ss_pred hhHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCCCCHHHHHHHHhhhcC
Confidence 99999999999988866999999999 789999999999997
No 3
>PRK05427 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.92 E-value=1.8e-24 Score=185.87 Aligned_cols=160 Identities=20% Similarity=0.175 Sum_probs=121.2
Q ss_pred CchHHHHHHHhcccccccCCCCCCceEEEeeeccccCCCCchHHHHHHHHcCCCCCC----------eeeccccchHhhh
Q 038722 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANS----------LLFADEVDLEILL 70 (181)
Q Consensus 1 ivSai~~Ay~~~~~~~~~~~~~~~~~~vPvini~r~d~~lr~E~~~ll~~~~I~~~~----------Lif~dd~~~~~l~ 70 (181)
++||+++||++.+ .+..++|+.. ..+++|+.++++.+|+..+. ++.+|--+.....
T Consensus 17 igSalala~~l~~---------~g~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~ 82 (308)
T PRK05427 17 ICSAIAYAYLKKA---------LGLDAEAVRL-----GEPNPETAFVLDYFGVEAPELITSVAGEVQVILVDHNEFQQSP 82 (308)
T ss_pred HHHHHHHHHHHHH---------hCCceEEEEC-----CCCCHHHHHHHHHcCCCChhHHhhcccCCeEEEEeCCCcccCc
Confidence 5799999999874 1233667632 26889999999999875432 3333432222211
Q ss_pred c-CCCe-EEEEecCCCCCC----------CccCcchHHHHHHHHhhhccCCCCcHHHHHHHHhhHHhhhcCCCCCCCCCC
Q 038722 71 M-TGQL-SIVVVGQDVLRT----------NAEVGSQCTILTDNSCEDAYDLLQTPVLKKILLAGILLDTHNLDSYSSLST 138 (181)
Q Consensus 71 ~-~~~~-~~~LVDHn~l~~----------~~~vGSc~TLV~~~~~~~~~~~l~~~~~a~LLl~aIL~DT~nl~~~~~k~t 138 (181)
. ..+. .+.++|||..+. ++|+|||||+|++++.+...++ ++.+|++|++||+.||+||+. +++|
T Consensus 83 ~~~~~~~~~~iIDHH~~~~~~~~~p~~~~~~~~gSt~tiv~~~~~~~~~~i--~~~iA~~L~~gIltDT~~F~~--~~tt 158 (308)
T PRK05427 83 DDIDEATVVGVVDHHRLGNFETSNPLYYRIEPVGCTATILYKMFKENGVEI--PKEIAGLMLSAILSDTLLFKS--PTTT 158 (308)
T ss_pred chhcccCEEEEECCCcCCCCCCCCceEEEEeeeccHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHhcccCC--CCCC
Confidence 1 0111 368899999742 3789999999999998776653 579999999999999999994 7899
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHh---------cCHHHHHHhhcCCCC
Q 038722 139 SRDAEAVQLLSIGSSPNYRNNLFDQY---------GSVLEAMRHSYGMPP 179 (181)
Q Consensus 139 ~~D~~~~~~L~~~~~~~~r~~lf~~L---------ls~~dlLrrDyK~~~ 179 (181)
++|++++++|.+..| .++++++++| ++..+||+||||++.
T Consensus 159 ~~d~~~a~~L~~~~g-~d~~~~~~~l~~~~s~~~~~s~~~ll~~dlk~f~ 207 (308)
T PRK05427 159 EQDKAAAEELAEIAG-VDIEAYGLEMLKAKSDVSGKSAEELIDMDAKEFE 207 (308)
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHhcCCccCCCHHHHHHhcCeeee
Confidence 999999999997665 3888888888 589999999999873
No 4
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.60 E-value=2.9e-15 Score=137.24 Aligned_cols=98 Identities=23% Similarity=0.265 Sum_probs=84.0
Q ss_pred EEEecCCCCCC----------CccCcchHHHHHHHHhhhccCCCCcHHHHHHHHhhHHhhhcCCCCCCCCCCHHHHHHHH
Q 038722 77 IVVVGQDVLRT----------NAEVGSQCTILTDNSCEDAYDLLQTPVLKKILLAGILLDTHNLDSYSSLSTSRDAEAVQ 146 (181)
Q Consensus 77 ~~LVDHn~l~~----------~~~vGSc~TLV~~~~~~~~~~~l~~~~~a~LLl~aIL~DT~nl~~~~~k~t~~D~~~~~ 146 (181)
+.++|||.+.. .+++|||||+|+++|.+...++ ++.+|.+|++||+.||++|++ ++||++|+++++
T Consensus 328 ~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~--~~~ia~~ll~gIlsDT~~f~~--~~tt~~d~~~a~ 403 (546)
T PRK14869 328 LEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEP--SPEIAGLLLAAILSDTLLFKS--PTTTELDREAAE 403 (546)
T ss_pred EEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHhcCccC--CCCCHHHHHHHH
Confidence 56779998643 2688999999999998876654 579999999999999999994 789999999999
Q ss_pred HHhcCCCCchHHHHHHHh---------cCHHHHHHhhcCCCC
Q 038722 147 LLSIGSSPNYRNNLFDQY---------GSVLEAMRHSYGMPP 179 (181)
Q Consensus 147 ~L~~~~~~~~r~~lf~~L---------ls~~dlLrrDyK~~~ 179 (181)
+|.+..+ .+.+++++++ +++.++|++|||++.
T Consensus 404 ~L~~~~g-~~~~~~~~~l~~~~~~~~~~~~~~~l~~d~K~~~ 444 (546)
T PRK14869 404 WLAEIAG-IDPEEFAKEMFKAGSSLEGKTPEEIFNRDFKEFT 444 (546)
T ss_pred HHHHHhC-CCHHHHHHHHHHcCCCcCCCCHHHHHHhcCeeee
Confidence 9998655 4777888777 789999999999875
No 5
>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []. The RecJ protein of Escherichia coli plays an important role in a number of DNA repair and recombination pathways. RecJ catalyzes processive degradation of single-stranded DNA in a 5'-to-3' direction. Sequences highly related to those encoding RecJ can be found in many of the eubacterial genomes sequenced to date [].; GO: 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 3DEV_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2EB0_A 1I74_A 2ZXR_A 2ZXO_A ....
Probab=98.91 E-value=7.4e-09 Score=78.27 Aligned_cols=110 Identities=16% Similarity=0.254 Sum_probs=73.8
Q ss_pred CchHHHHHHHhcccccccCCCCCCceEEEeeeccccCCCCchHHHHHHHHcCCCCCCeeeccccchHh----hhcCCCeE
Q 038722 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLFADEVDLEI----LLMTGQLS 76 (181)
Q Consensus 1 ivSai~~Ay~~~~~~~~~~~~~~~~~~vPvini~r~d~~lr~E~~~ll~~~~I~~~~Lif~dd~~~~~----l~~~~~~~ 76 (181)
++||+++++++.... .....++. .....+.+..+.+...++..+.+++.|--.... .......+
T Consensus 21 l~Sa~~l~~~l~~~~-------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ii~vD~~~~~~~~~~~~~~~~~~ 88 (145)
T PF01368_consen 21 LGSAIALAKILKRLG-------KEVTVIPI-----PEGPPHEYFLFVLKYFEMNEDLIILVDCGSPDRDGEKLEELKGIK 88 (145)
T ss_dssp HHHHHHHHHHHHHTT-------CTEEEEEE-----CSSTCGHHHHHHHHHTTHHHSEEEEES-SSGGGSGTTGGGTSCSE
T ss_pred HHHHHHHHHHHHHcC-------CCceEEec-----CCCCcchhhhhhhhhhcccceEEEEecCCccccchHHHHhcCCCC
Confidence 479999999887521 22334554 223455566566677666667777777533322 11222368
Q ss_pred EEEecCCCCCC-----------CccCcchHHHHHHHHhhhccCCCCcHHHHHHHHhhHH
Q 038722 77 IVVVGQDVLRT-----------NAEVGSQCTILTDNSCEDAYDLLQTPVLKKILLAGIL 124 (181)
Q Consensus 77 ~~LVDHn~l~~-----------~~~vGSc~TLV~~~~~~~~~~~l~~~~~a~LLl~aIL 124 (181)
++++|||..+. .+.+||||++|++++.+...++ ++++|.+|+.||+
T Consensus 89 viiiDHH~~~~~~~~~~~~~~~~~~~~s~~~lv~~~~~~~~~~~--~~~~a~ll~~Giv 145 (145)
T PF01368_consen 89 VIIIDHHQPGEEDINPNDVNYIDESAGSTSTLVAEMLKELGIKI--DKEIATLLLAGIV 145 (145)
T ss_dssp EEEEESSSSBSS---SSCEEEEETSSSHHHHHHHHHHHHTTCCH--HHHHHHHHHHHHH
T ss_pred EEEeCCCCCCcccCCCCCCCCEeCcHHHHHHHHHHHHHHcCCCC--cHHHHHHHHhhhC
Confidence 89999996543 2678999999999998776553 5899999999985
No 6
>COG0618 Exopolyphosphatase-related proteins [General function prediction only]
Probab=98.78 E-value=8.9e-08 Score=83.27 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=64.8
Q ss_pred eEEEEecCCCC-CC--------CccCcchHHHHHHHHhhhccCCCCcHHHHHHHHhhHHhhhcCCCCCCCCCCHHHHHHH
Q 038722 75 LSIVVVGQDVL-RT--------NAEVGSQCTILTDNSCEDAYDLLQTPVLKKILLAGILLDTHNLDSYSSLSTSRDAEAV 145 (181)
Q Consensus 75 ~~~~LVDHn~l-~~--------~~~vGSc~TLV~~~~~~~~~~~l~~~~~a~LLl~aIL~DT~nl~~~~~k~t~~D~~~~ 145 (181)
-.++.+|||.. .. ...+|||+|+|++++++....+ .+.+|+.|+.+|..||++|.. .++|++..+++
T Consensus 108 ~~~ivIDHH~~~~~~~~~~~~i~~~~~ataeii~~~~~~~~~~~--~~~~At~L~~GI~tDTg~F~~--~~t~~~~~~~a 183 (332)
T COG0618 108 KKVIVIDHHPGNNDIYGDFVWIDPSAGATAEIIAELLKEAGIDL--DPLVATALLLGIRTDTGRFRY--ANTTADTLAAA 183 (332)
T ss_pred CceEEEeCCCCCCCCCCceEEeCCCCchHHHHHHHHHHHcCCCc--cHHHHHHHHhhhhhccccccc--CCCChhHHHHH
Confidence 37899999985 22 2568999999999998887664 467999999999999999995 57779999999
Q ss_pred HHHhcCCCCchHHHHHH
Q 038722 146 QLLSIGSSPNYRNNLFD 162 (181)
Q Consensus 146 ~~L~~~~~~~~r~~lf~ 162 (181)
.+|..... +..+.++
T Consensus 184 ~~L~~~g~--~~~~v~~ 198 (332)
T COG0618 184 ALLVEAGA--DLLEVLE 198 (332)
T ss_pred HHHHhCCC--CHHHHHh
Confidence 99976432 3444444
No 7
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=98.55 E-value=3.6e-07 Score=88.05 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=57.8
Q ss_pred EEEEecCCCCCC---------CccCc-chHHHHHHHHhhhccC-CCCcHHHHHHHHhhHHhhhcCCCCCCCCCCHHHHHH
Q 038722 76 SIVVVGQDVLRT---------NAEVG-SQCTILTDNSCEDAYD-LLQTPVLKKILLAGILLDTHNLDSYSSLSTSRDAEA 144 (181)
Q Consensus 76 ~~~LVDHn~l~~---------~~~vG-Sc~TLV~~~~~~~~~~-~l~~~~~a~LLl~aIL~DT~nl~~~~~k~t~~D~~~ 144 (181)
+++++|||.... ++|.+ |||+||++++.....+ .+ ++..|+.|++||+.||.||+. +||+++.+|
T Consensus 471 ~iIVIDHHr~~~~~i~~~l~yIep~ASST~ELV~Ell~~~~~~i~l-~~~eAt~LyaGI~tDTg~F~~---~Tt~rTFea 546 (838)
T PRK14538 471 NIIVIDHHRATEEIIPSIFSYVDSSASSTVELLVELMGFLEKEIHI-TAFEASIMYAGILIDTNAFIY---RTSSRTFEV 546 (838)
T ss_pred CEEEEeCCCCCCCCCCccEEEEEcCcCcHHHHHHHHHHHcCCCCCC-CHHHHHHHHhHHHHHcCCccc---CCCHHHHHH
Confidence 589999998643 26665 6889999988543322 13 579999999999999999994 699999999
Q ss_pred HHHHhcC
Q 038722 145 VQLLSIG 151 (181)
Q Consensus 145 ~~~L~~~ 151 (181)
+.+|.+.
T Consensus 547 AA~L~~~ 553 (838)
T PRK14538 547 ASKLKDL 553 (838)
T ss_pred HHHHHHc
Confidence 9999874
No 8
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=98.34 E-value=1e-06 Score=81.20 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=58.6
Q ss_pred EEEEecCCCCCC----------CccC-cchHHHHHHHHhhhc-cCCCCcHHHHHHHHhhHHhhhcCCCCCCCCCCHHHHH
Q 038722 76 SIVVVGQDVLRT----------NAEV-GSQCTILTDNSCEDA-YDLLQTPVLKKILLAGILLDTHNLDSYSSLSTSRDAE 143 (181)
Q Consensus 76 ~~~LVDHn~l~~----------~~~v-GSc~TLV~~~~~~~~-~~~l~~~~~a~LLl~aIL~DT~nl~~~~~k~t~~D~~ 143 (181)
+++++|||+-.. +||- .|++-||+|.+.-.. ..-+ .+-.|+.||++|++||-||+ .||+.|-++
T Consensus 438 kvVViDHHRR~e~f~~n~~l~YiEsyASStsELVTEliqyq~~~~kl-~~ieAt~LlAGI~vDTKnFt---~rTgsRTFd 513 (655)
T COG3887 438 KVVVIDHHRRDEDFISNPLLVYIESYASSTSELVTELIQYQPKKQKL-SPIEATALLAGIIVDTKNFT---LRTGSRTFD 513 (655)
T ss_pred eEEEEeccccccccccchHHhhhccCcccHHHHHHHHHHhCchhccc-cHHHHHHHHhceEEecccce---eecccceeh
Confidence 489999999653 3664 588889999884322 1123 47999999999999999998 699999999
Q ss_pred HHHHHhcCCC
Q 038722 144 AVQLLSIGSS 153 (181)
Q Consensus 144 ~~~~L~~~~~ 153 (181)
||.+|..+..
T Consensus 514 AAsyLRs~Ga 523 (655)
T COG3887 514 AASYLRSRGA 523 (655)
T ss_pred HHHHHHhcCC
Confidence 9999987643
No 9
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.56 E-value=0.0028 Score=45.97 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=36.1
Q ss_pred CchHHHHHHHhcccccccCCCCCCceEEEeeeccccCCCCchHHHHHHHHcCCCCCCeeec
Q 038722 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLFA 61 (181)
Q Consensus 1 ivSai~~Ay~~~~~~~~~~~~~~~~~~vPvini~r~d~~lr~E~~~ll~~~~I~~~~Lif~ 61 (181)
|||||+||+++++. ....++|. ..+ ...+|+.|+|+.+|+..+.++-.
T Consensus 8 i~sai~~~~~~~~~--------~~~~~~~~---~~g--~~n~e~~~vl~~~~~~~p~ll~~ 55 (113)
T cd04597 8 VASAIAYAHLKRRQ--------GMDNVTAA---RLG--EPNPQTRYVLEYLGIEPPILLAD 55 (113)
T ss_pred HHHHHHHHHHHhhc--------CCCceeeh---hcC--CCCHHHHHHHHHcCCCCchhhcc
Confidence 68999999999752 11235675 233 69999999999999988876533
No 10
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=74.29 E-value=3.9 Score=37.74 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=34.7
Q ss_pred CchHHHHHHHhcccccccCCCCCCceEEEeeeccccCCCCchHHHHHHHHcCCCCCCee
Q 038722 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLL 59 (181)
Q Consensus 1 ivSai~~Ay~~~~~~~~~~~~~~~~~~vPvini~r~d~~lr~E~~~ll~~~~I~~~~Li 59 (181)
|+|||+||.+.+.. ....++|.. .+ ....++.|+++.+|++++.++
T Consensus 18 i~sai~ya~l~~~~--------~~~~~v~~r---~~--~~~~~~e~vl~~~~~~~p~ll 63 (546)
T PRK14869 18 ICSAIAYAELKNKL--------GEGNYIPAR---LG--ELNPETKFVLDYFGVEAPELI 63 (546)
T ss_pred HHHHHHHHHHHHHc--------CCCcEEEee---CC--CCCHHHHHHHHHhCCCchhhh
Confidence 58999999999852 122377772 33 688999999999999876655
No 11
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=56.36 E-value=1.4e+02 Score=27.73 Aligned_cols=19 Identities=21% Similarity=0.245 Sum_probs=14.9
Q ss_pred HHHHHHHHhhHHhhhcCCC
Q 038722 113 PVLKKILLAGILLDTHNLD 131 (181)
Q Consensus 113 ~~~a~LLl~aIL~DT~nl~ 131 (181)
.+...|..-+.+-|-+.|.
T Consensus 196 ~~~ldl~aigtiaD~~~l~ 214 (539)
T TIGR00644 196 LDLLDLVAIGTIADVMPLT 214 (539)
T ss_pred HHHHHHHHHHHHHhhCccc
Confidence 4677777788888988886
No 12
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=37.95 E-value=1.5e+02 Score=28.15 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=29.6
Q ss_pred ccCCCCchHHHHHHHHcCCCCCCeeeccc----cchHhhhcCCCeEEEEecCCCCC
Q 038722 35 RSNMWKHYQAAWLFHHVGLDANSLLFADE----VDLEILLMTGQLSIVVVGQDVLR 86 (181)
Q Consensus 35 r~d~~lr~E~~~ll~~~~I~~~~Lif~dd----~~~~~l~~~~~~~~~LVDHn~l~ 86 (181)
.+.+-+..+..--+...| .+-+|+.|- ++.-.....-.+.++++|||..+
T Consensus 110 ~eGYGl~~~~i~~~~~~~--~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH~~~ 163 (575)
T PRK11070 110 EDGYGLSPEVVDQAHARG--AQLIVTVDNGISSHAGVAHAHALGIPVLVTDHHLPG 163 (575)
T ss_pred cCCCCCCHHHHHHHHhcC--CCEEEEEcCCcCCHHHHHHHHHCCCCEEEECCCCCC
Confidence 456778877654443322 356777774 22222223346789999999754
No 13
>PTZ00445 p36-lilke protein; Provisional
Probab=30.59 E-value=11 Score=31.35 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=18.8
Q ss_pred HHHHHHcCCCCCCeeeccccc
Q 038722 45 AWLFHHVGLDANSLLFADEVD 65 (181)
Q Consensus 45 ~~ll~~~~I~~~~Lif~dd~~ 65 (181)
..++++.|+.+++.+|.||-.
T Consensus 168 e~ll~~~gl~peE~LFIDD~~ 188 (219)
T PTZ00445 168 KQVCSDFNVNPDEILFIDDDM 188 (219)
T ss_pred HHHHHHcCCCHHHeEeecCCH
Confidence 679999999999999999854
No 14
>PF10606 GluR_Homer-bdg: Homer-binding domain of metabotropic glutamate receptor ; InterPro: IPR019588 This entry represents the proline-rich region of metabotropic glutamate receptor proteins that bind Homer-related synaptic proteins. Metabotropic glutamate receptors function as receptors for glutamate. The activity of this receptor is mediated by a G-protein that activates a phosphatidylinositol-calcium second messenger system. The Homer proteins form a physical tether linking mGluRs with the inositol trisphosphate receptors (IP3R) that appears to be due to the proline-rich Homer ligand (PPXXFr). Activation of PI turnover triggers intracellular calcium release []. Metabotropic glutamate receptor (MGluR) function is altered in the mouse model of human Fragile X syndrome mental retardation, a disorder caused by loss of function mutations in the Fragile X mental retardation gene Fmr1. Homer 3 (and to a lesser extent Homer 1b/c) has been shown to form a multimeric complex with mGlu1a and the IP3 receptor, indicating that Homers may play a role in the localisation of receptors to their signalling partners []. ; PDB: 1DDV_B.
Probab=21.57 E-value=31 Score=22.04 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCC
Q 038722 167 VLEAMRHSYGMPPN 180 (181)
Q Consensus 167 ~~dlLrrDyK~~~~ 180 (181)
..+++-|||||.++
T Consensus 36 Y~~~ilrdy~qSSS 49 (51)
T PF10606_consen 36 YTSLILRDYSQSSS 49 (51)
T ss_dssp --------------
T ss_pred hhHHHHhhcccccc
Confidence 46678889999875
Done!