Query 038722
Match_columns 181
No_of_seqs 109 out of 696
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qb7_A Exopolyphosphatase; A/B 99.9 5.9E-27 2E-31 205.7 6.9 174 1-179 43-271 (397)
2 2eb0_A Manganese-dependent ino 99.9 1.8E-22 6.3E-27 171.4 11.7 155 1-178 15-206 (307)
3 2haw_A Manganese-dependent ino 99.9 3.3E-22 1.1E-26 170.0 12.2 159 1-178 17-207 (309)
4 1k20_A Manganese-dependent ino 99.9 8.5E-22 2.9E-26 167.7 11.5 159 1-178 16-208 (310)
5 1wpn_A Manganese-dependent ino 99.8 8E-18 2.8E-22 133.1 14.9 145 1-164 17-184 (188)
6 3dma_A Exopolyphosphatase-rela 99.4 1.6E-12 5.5E-17 112.1 13.5 103 56-164 93-211 (343)
7 3dev_A SH1221; alpha-beta prot 99.4 1.9E-12 6.5E-17 110.7 12.9 102 57-164 78-192 (320)
8 2zxr_A Single-stranded DNA spe 96.3 0.0097 3.3E-07 55.3 7.8 74 56-131 130-226 (666)
9 4eyt_A Telomerase associated p 21.2 94 0.0032 21.6 3.4 28 25-54 12-39 (129)
10 1xrx_A SEQA protein; protein f 20.5 74 0.0025 19.2 2.4 13 165-177 23-35 (50)
No 1
>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase, hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A 2qb8_A*
Probab=99.93 E-value=5.9e-27 Score=205.68 Aligned_cols=174 Identities=14% Similarity=0.245 Sum_probs=134.2
Q ss_pred CchHHHHHHHhcccccccCC--CCCCceEEEeeeccccCCCCchHHHHHHHHcCCCCCCeeeccccc--------h----
Q 038722 1 MVAAICYAWLLENRKRKNKG--QGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLLFADEVD--------L---- 66 (181)
Q Consensus 1 ivSai~~Ay~~~~~~~~~~~--~~~~~~~vPvini~r~d~~lr~E~~~ll~~~~I~~~~Lif~dd~~--------~---- 66 (181)
|+|||+|||++.+...+..+ ..+...++|++|+||.+.++|+|+.++|+.+|++.+.++|.+++. .
T Consensus 43 igSalala~~l~~~gk~~~~~~~~~~~~~v~v~~~~r~~~~~~~e~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 122 (397)
T 2qb7_A 43 IASAITYSYCQYIYNEGTYSEEKKKGSFIVPIIDIPREDLSLRRDVMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELN 122 (397)
T ss_dssp HHHHHHHHHHHHHHHHSGGGSSSCCCCCCEEECSSCGGGGGGCHHHHHHHHHTTCCGGGSCCHHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHHHHHHhcCCccccccccCCccEEEEEcccccccccCHHHHHHHHHcCCChhhcccHHHHHHHHHhhcccCCCe
Confidence 57999999999753200000 002345899999999999999999999999999988888776653 1
Q ss_pred HhhhcCC----------CeEEEEecCCCCCC---------CccCcchHHHHHHHHhhh---ccCCCCcHHHHHHHHhhHH
Q 038722 67 EILLMTG----------QLSIVVVGQDVLRT---------NAEVGSQCTILTDNSCED---AYDLLQTPVLKKILLAGIL 124 (181)
Q Consensus 67 ~~l~~~~----------~~~~~LVDHn~l~~---------~~~vGSc~TLV~~~~~~~---~~~~l~~~~~a~LLl~aIL 124 (181)
..+++++ ...+.++|||...+ ++|+|||||||+++|.+. ..++ ++++|++|++||+
T Consensus 123 vilVD~~~~~r~~~~~~~~~~~iIDHH~~~~~~~~~~~~~i~p~gSt~tlv~~~~~~~~~~~~~i--~~~~A~~L~~gI~ 200 (397)
T 2qb7_A 123 SYLVDNNDTPKNLKNYIDNVVGIIDHHFDLQKHLDAEPRIVKVSGSCSSLVFNYWYEKLQGDREV--VMNIAPLLMGAIL 200 (397)
T ss_dssp EEEESCSSCCGGGTTTCCEEEEEEECSCCCCCCTTCSSEEECCCSCHHHHHHHHHHHHTTTCHHH--HHHHHHHHHHHHH
T ss_pred EEEecCCCcccCcccccccEEEEEcCCCCCCCCCCCCccEEeecccHHHHHHHHHHHhhhccCCc--CHHHHHHHHHHHH
Confidence 1123332 12356788888732 268999999999999765 4443 6899999999999
Q ss_pred hhhcCCCCCCCCCCHHHHHHHHHHhcCC----------CCchHHHHHHHh---------cCHHHHHHhhcCCCC
Q 038722 125 LDTHNLDSYSSLSTSRDAEAVQLLSIGS----------SPNYRNNLFDQY---------GSVLEAMRHSYGMPP 179 (181)
Q Consensus 125 ~DT~nl~~~~~k~t~~D~~~~~~L~~~~----------~~~~r~~lf~~L---------ls~~dlLrrDyK~~~ 179 (181)
.||+||+ .+||++|++|+.+|.+.. +..+++++|+.| +++.++|++|||++.
T Consensus 201 ~DT~~F~---~~tt~~d~~aa~~L~~~~~~~~~~~~~~~g~d~~~~~~~l~~a~~~~~~l~l~~~l~~d~K~~~ 271 (397)
T 2qb7_A 201 IDTSNMR---RKVEESDKLAIERCQAVLSGAVNEVSAQGLEDSSEFYKEIKSRKNDIKGFSVSDILKKDYKQFN 271 (397)
T ss_dssp HHTTTTT---SSCCHHHHHHHHHHHHHHHCSCSSCCSHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHTTEEEEE
T ss_pred HhhcccC---CCCCHHHHHHHHHHHHHhccccccccccCcccHHHHHHHHHHHhhccccCCHHHHHHHhhhhcc
Confidence 9999998 389999999999998763 135788888877 789999999999873
No 2
>2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain, DHHA2 domain, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii}
Probab=99.88 E-value=1.8e-22 Score=171.37 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=116.5
Q ss_pred CchHHHHHHHhcccccccCCCCCCceEEEeeeccccCCCCchHHHHHHHHcCCCCCCee---------eccccchHhhhc
Q 038722 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLL---------FADEVDLEILLM 71 (181)
Q Consensus 1 ivSai~~Ay~~~~~~~~~~~~~~~~~~vPvini~r~d~~lr~E~~~ll~~~~I~~~~Li---------f~dd~~~~~l~~ 71 (181)
++||+++||++. ..|++ ..++++|+.|+|+.++++.+.++ .+|--+......
T Consensus 15 igSalal~~~l~--------------~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~~ 75 (307)
T 2eb0_A 15 IASAIVLAYFLD--------------CYPAR-----LGDINPETEFVLRKFGVMEPELIESAKGKEIILVDHSEKSQSFD 75 (307)
T ss_dssp HHHHHHHHHHHT--------------SEEEE-----SSCCCHHHHHHHHHHTCCCCEECCCCTTCEEEEESCCCGGGSCT
T ss_pred HHHHHHHHHHhC--------------CeEEE-----cCCCCHHHHHHHHHcCCCchhhhhhccCCeEEEEeCCCcccchh
Confidence 479999999972 24554 23578999999999998755443 333222221110
Q ss_pred --CCCeEEEEecCCCCC-C--------CccCcchHHHHHHHHhhhc--------cCCCCcHHHHHHHHhhHHhhhcCCCC
Q 038722 72 --TGQLSIVVVGQDVLR-T--------NAEVGSQCTILTDNSCEDA--------YDLLQTPVLKKILLAGILLDTHNLDS 132 (181)
Q Consensus 72 --~~~~~~~LVDHn~l~-~--------~~~vGSc~TLV~~~~~~~~--------~~~l~~~~~a~LLl~aIL~DT~nl~~ 132 (181)
...-.+.++|||..+ . .+++|||||||++++.+.. .+ + ++++|++|++||+.||+||+.
T Consensus 76 ~~~~~~~~~iIDHH~~~~~~~~~~~~~~~~~gSt~tlv~~~~~~~~~~~~~~~~~~-i-~~~~A~~L~~gI~~DT~~f~~ 153 (307)
T 2eb0_A 76 DLEEGKLIAIIDHHKVGLTTTEPILYYAKPVGSTATVIAELYFKDAIDLIGGKKKE-L-KPDLAGLLLSAIISDTVLFKS 153 (307)
T ss_dssp TGGGSEEEEEEESSCCCCCCSSCCEEEECSSSCHHHHHHHHHHTTCGGGGTCCCCC-C-CHHHHHHHHHHHHHHHTTTTS
T ss_pred hcccCCEEEEEcCCCCccCCCCCcEEEEeecchHHHHHHHHHHhcCcccccccccc-C-CHHHHHHHHHHHHHHhcCCCC
Confidence 011246789999875 1 2789999999999998765 44 3 589999999999999999994
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCchHHHHHHHh---------cCHHHHHHhhcCCC
Q 038722 133 YSSLSTSRDAEAVQLLSIGSSPNYRNNLFDQY---------GSVLEAMRHSYGMP 178 (181)
Q Consensus 133 ~~~k~t~~D~~~~~~L~~~~~~~~r~~lf~~L---------ls~~dlLrrDyK~~ 178 (181)
+++|++|++++.+|.+..+..+++++++.+ +++.+++++|||.+
T Consensus 154 --~~tt~~d~~aa~~L~~~~g~~d~~~i~~~l~~~~~~~~~~~~~~~l~~d~k~~ 206 (307)
T 2eb0_A 154 --PTTTDLDKEMAKKLAEIAGISNIEEFGMEILKAKSVVGKLKPEEIINMDFKNF 206 (307)
T ss_dssp --TTCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHGGGGSCHHHHHTTSEEEE
T ss_pred --CCCCHHHHHHHHHHHhhCCCccHHHHHHHHHHhhcCcccCCHHHHHHHhhhhe
Confidence 689999999999998655544777777666 78899999999976
No 3
>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*
Probab=99.87 E-value=3.3e-22 Score=169.96 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=117.6
Q ss_pred CchHHHHHHHhcccccccCCCCCCceEEEeeeccccCCCCchHHHHHHHHcCCCCCC-----------eeeccccchHhh
Q 038722 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANS-----------LLFADEVDLEIL 69 (181)
Q Consensus 1 ivSai~~Ay~~~~~~~~~~~~~~~~~~vPvini~r~d~~lr~E~~~ll~~~~I~~~~-----------Lif~dd~~~~~l 69 (181)
++||+++||++.+. +..+.|++ .+ ++++|+.|+|+.++++.+. ++.+|--+....
T Consensus 17 igSalal~~~l~~~---------g~~~~~~~---~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~vilVD~~~~~r~ 82 (309)
T 2haw_A 17 ICSAIAYADLKNKL---------GFNAEPVR---LG--QVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQS 82 (309)
T ss_dssp HHHHHHHHHHHHHT---------TCCEEEEE---SS--CCCHHHHHHHHHTTCCCCEECSCSTTTCSEEEEESCCCGGGS
T ss_pred HHHHHHHHHHHHHc---------CCCeEEEE---CC--CCCHHHHHHHHHcCCCcHHhhhhccCCCCEEEEEeCCCcccc
Confidence 47999999999852 12267774 22 5789999999999986443 333333222221
Q ss_pred hc--CCCeEEEEecCCCCCC----------CccCcchHHHHHHHHhhhccCCCCcHHHHHHHHhhHHhhhcCCCCCCCCC
Q 038722 70 LM--TGQLSIVVVGQDVLRT----------NAEVGSQCTILTDNSCEDAYDLLQTPVLKKILLAGILLDTHNLDSYSSLS 137 (181)
Q Consensus 70 ~~--~~~~~~~LVDHn~l~~----------~~~vGSc~TLV~~~~~~~~~~~l~~~~~a~LLl~aIL~DT~nl~~~~~k~ 137 (181)
.. ...-.+.++|||..+. .+++|||||||++++.+...++ ++++|++|++||+.||+||+. +++
T Consensus 83 ~~~~~~~~~~~iIDHH~~~~~~~~~~~~~~~~~~gSt~~lv~~~~~~~~~~i--~~~~A~~L~~gI~~DT~~F~~--~~t 158 (309)
T 2haw_A 83 IKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTATILNKMYKENNVKI--EKEIAGLMLSAIISDSLLFKS--PTC 158 (309)
T ss_dssp CTTGGGSEEEEEEECSCCCSCCCSSCCEEEECCSSCHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHTTTTS--TTC
T ss_pred hhhhhhcCEEEEECCCcCCCcCCCCCcEEEEccccHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHhcCCCC--CCC
Confidence 10 0112467899998753 2689999999999998776553 589999999999999999994 689
Q ss_pred CHHHHHHHHHHhcCCCCchHHHHHHHh---------cCHHHHHHhhcCCC
Q 038722 138 TSRDAEAVQLLSIGSSPNYRNNLFDQY---------GSVLEAMRHSYGMP 178 (181)
Q Consensus 138 t~~D~~~~~~L~~~~~~~~r~~lf~~L---------ls~~dlLrrDyK~~ 178 (181)
|++|.+++.+|.+..| .+.+.+++++ +++.+++++|||.+
T Consensus 159 t~~d~~aa~~L~~~~G-~d~~~i~~~l~~~~~~~~~~~~~~~l~~d~k~~ 207 (309)
T 2haw_A 159 TDQDVAAAKELAEIAG-VDAEEYGLNMLKAGADLSKKTVEELISLDAKEF 207 (309)
T ss_dssp CHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHTCCTTCCHHHHTTTTEEEE
T ss_pred CHHHHHHHHHHHHHcC-CCHHHHHHHHHHhccCcccCCHHHHHHHHHHHH
Confidence 9999999999985344 2566666555 68899999999976
No 4
>1k20_A Manganese-dependent inorganic pyrophosphatase; family II ppase, binuclear metal centre, hydrolas; 1.50A {Streptococcus gordonii} SCOP: c.107.1.1 PDB: 1wpp_A 2enx_A* 1i74_A
Probab=99.86 E-value=8.5e-22 Score=167.68 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=116.8
Q ss_pred CchHHHHHHHh-cccccccCCCCCCceEEEeeeccccCCCCchHHHHHHHHcCCCCCCee------------eccccchH
Q 038722 1 MVAAICYAWLL-ENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDANSLL------------FADEVDLE 67 (181)
Q Consensus 1 ivSai~~Ay~~-~~~~~~~~~~~~~~~~vPvini~r~d~~lr~E~~~ll~~~~I~~~~Li------------f~dd~~~~ 67 (181)
++||+++||++ .+. + . .+.|+. .+ ++++|+.|+|+.++++.+.++ .+|--+..
T Consensus 16 igSalal~~~l~~~~-----g--~--~~~~~~---~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~vilVD~~~~~ 81 (310)
T 1k20_A 16 IGSSYAFAYLAREAY-----G--L--DTEAVA---LG--EPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQ 81 (310)
T ss_dssp HHHHHHHHHHHHHHH-----C--C--CEEECB---SS--CCCHHHHHHHHHHTCCCCCBCSCTGGGTCSEEEEESCCCGG
T ss_pred HHHHHHHHHHHHhcc-----C--C--ceEEEE---CC--CCCHHHHHHHHHcCCCchhhhhhhccccCceEEEEcCCCcc
Confidence 47999999999 641 1 2 266664 23 477999999999998654433 22322222
Q ss_pred hhhc--CCCeEEEEecCCCCCC----------CccCcchHHHHHHHHhhhccCCCCcHHHHHHHHhhHHhhhcCCCCCCC
Q 038722 68 ILLM--TGQLSIVVVGQDVLRT----------NAEVGSQCTILTDNSCEDAYDLLQTPVLKKILLAGILLDTHNLDSYSS 135 (181)
Q Consensus 68 ~l~~--~~~~~~~LVDHn~l~~----------~~~vGSc~TLV~~~~~~~~~~~l~~~~~a~LLl~aIL~DT~nl~~~~~ 135 (181)
.... ...-.++++|||..+. ++|+|||||||++++.+...++ ++++|++|++||+.||+||+. +
T Consensus 82 r~~~~~~~~~~~~iIDHH~~~~~~~~~~~~~~i~p~gSt~tiv~~~~~~~~~~i--~~~~A~~L~~gI~~DT~~F~~--~ 157 (310)
T 1k20_A 82 QSVADIAEVEVYGVVDHHRVANFETANPLYMRLEPVGSASSIVYRMFKEHSVAV--SKEIAGLMLSGLISDTLLLKS--P 157 (310)
T ss_dssp GSCTTGGGSEEEEEEECSCCCSCCCSSCCEEEECSSSCHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHTTTTS--T
T ss_pred cccccccccCEEEEECCCcCCCcCCCCCcEEEEEEccHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHhcCCCC--C
Confidence 1110 0112478899999753 3689999999999998766553 589999999999999999995 7
Q ss_pred CCCHHHHHHHHHHhcCCCCchHHHHHHHh---------cCHHHHHHhhcCCC
Q 038722 136 LSTSRDAEAVQLLSIGSSPNYRNNLFDQY---------GSVLEAMRHSYGMP 178 (181)
Q Consensus 136 k~t~~D~~~~~~L~~~~~~~~r~~lf~~L---------ls~~dlLrrDyK~~ 178 (181)
++|++|++++.+|.+..| .+.+.+++++ +|..++|++|||++
T Consensus 158 ~tt~~d~~aa~~L~~~~G-~d~~~i~~~l~~~~sd~~~ls~~~ll~~~lk~~ 208 (310)
T 1k20_A 158 TTHPTDKAIAPELAELAG-VNLEEYGLAMLKAGTNLASKSAEELIDIDAKTF 208 (310)
T ss_dssp TCCHHHHHHHHHHHHHHT-SCHHHHHHHHHHTTCCCTTSCHHHHTTSSEEEE
T ss_pred CCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHhccCcccCCHHHHHHHHHHhc
Confidence 899999999999985444 3667777666 67799999999975
No 5
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=99.77 E-value=8e-18 Score=133.06 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=103.6
Q ss_pred CchHHHHHHHhcccccccCCCCCCceEEEeeeccccCCCCchHHHHHHHHcCCCCC-----------CeeeccccchHhh
Q 038722 1 MVAAICYAWLLENRKRKNKGQGDGYVVVPVMNIKRSNMWKHYQAAWLFHHVGLDAN-----------SLLFADEVDLEIL 69 (181)
Q Consensus 1 ivSai~~Ay~~~~~~~~~~~~~~~~~~vPvini~r~d~~lr~E~~~ll~~~~I~~~-----------~Lif~dd~~~~~l 69 (181)
+.||+++++++.+. + . .+.+++ + + ++++++.|+++.+|++.+ .++.+|--+....
T Consensus 17 igSa~al~~~l~~~-----g--~--~~~~~~--~-~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vi~VD~~~~~r~ 82 (188)
T 1wpn_A 17 ICSAIAYADLKNKL-----G--F--NAEPVR--L-G--QVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQS 82 (188)
T ss_dssp HHHHHHHHHHHHHT-----T--C--CEEEEE--S-S--CCCHHHHHHHHHTTCCCCEECSCSTTTCSEEEEESCCCGGGS
T ss_pred HHHHHHHHHHHHHh-----C--C--ceEEEE--C-C--CCCHHHHHHHHHcCCCchhhhhhhccCCCeEEEEeCCCcccc
Confidence 47999999998752 1 2 244554 2 2 477999999999888522 2344443333221
Q ss_pred hc--CCCeEEEEecCCCCCC----------CccCcchHHHHHHHHhhhccCCCCcHHHHHHHHhhHHhhhcCCCCCCCCC
Q 038722 70 LM--TGQLSIVVVGQDVLRT----------NAEVGSQCTILTDNSCEDAYDLLQTPVLKKILLAGILLDTHNLDSYSSLS 137 (181)
Q Consensus 70 ~~--~~~~~~~LVDHn~l~~----------~~~vGSc~TLV~~~~~~~~~~~l~~~~~a~LLl~aIL~DT~nl~~~~~k~ 137 (181)
.. ...-.++++|||..+. .+++|||||||++++.+...++ ++++|++|++||+.||+||+. +++
T Consensus 83 ~~~~~~~~~vivIDHH~~~~~~~~~~~~~~~~~~~St~~lv~~~~~~~~~~i--~~~~A~~l~~gI~~DTg~f~~--~~t 158 (188)
T 1wpn_A 83 IKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTATILNKMYKENNVKI--EKEIAGLMLSAIISDSLLFKS--PTC 158 (188)
T ss_dssp CTTGGGSEEEEEEECSCCCSCCCSSCCEEEECSSSCHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHTTTTS--TTC
T ss_pred hhhhccCCeEEEECCCCCCCCCCCCCeEEEeccccHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHhccCC--CCC
Confidence 10 1123578899998643 2689999999999998765553 589999999999999999995 689
Q ss_pred CHHHHHHHHHHhcCCCCchHHHHHHHh
Q 038722 138 TSRDAEAVQLLSIGSSPNYRNNLFDQY 164 (181)
Q Consensus 138 t~~D~~~~~~L~~~~~~~~r~~lf~~L 164 (181)
|++|++++.+|.+..| .+..++++.+
T Consensus 159 t~~~~~~aa~L~~~~g-~d~~~i~~~l 184 (188)
T 1wpn_A 159 TDQDVAAAKELAEIAG-VDAEEYGLNM 184 (188)
T ss_dssp CHHHHHHHHHHHHHHT-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCHHHHHHHH
Confidence 9999999999985444 3666666655
No 6
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Probab=99.43 E-value=1.6e-12 Score=112.08 Aligned_cols=103 Identities=9% Similarity=0.117 Sum_probs=75.0
Q ss_pred CCeeeccccchHhhh------cCCCeEEEEecCCCCCC-------Ccc-CcchHHHHHHHHhhhc--cCCCCcHHHHHHH
Q 038722 56 NSLLFADEVDLEILL------MTGQLSIVVVGQDVLRT-------NAE-VGSQCTILTDNSCEDA--YDLLQTPVLKKIL 119 (181)
Q Consensus 56 ~~Lif~dd~~~~~l~------~~~~~~~~LVDHn~l~~-------~~~-vGSc~TLV~~~~~~~~--~~~l~~~~~a~LL 119 (181)
+.++.+|--+...+. ......++++|||..+. ++| +||||++|++++.+.. .+ + ++.+|++|
T Consensus 93 ~lvi~VD~~~~~r~~~~~~~l~~~~~~~ivIDHH~~~~~~~~~~~i~~~~~ST~eiv~~l~~~~~~~~~-i-~~~~At~L 170 (343)
T 3dma_A 93 DVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFRLICRMGYFSD-I-SKEGAECI 170 (343)
T ss_dssp SEEEEESCSSGGGGTTCHHHHHHCCSEEEEEECCSSCCSCSSEEEECTTSSCHHHHHHHHHHHTTCGGG-C-CHHHHHHH
T ss_pred CEEEEEeCCChHHhchhHHHHHhCCCCEEEEcCCCCCCCCCceEEEecCcCcHHHHHHHHHHHcCCCCC-C-CHHHHHHH
Confidence 345666654443321 11224678999999764 245 8999999999997654 33 3 58999999
Q ss_pred HhhHHhhhcCCCCCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHh
Q 038722 120 LAGILLDTHNLDSYSSLSTSRDAEAVQLLSIGSSPNYRNNLFDQY 164 (181)
Q Consensus 120 l~aIL~DT~nl~~~~~k~t~~D~~~~~~L~~~~~~~~r~~lf~~L 164 (181)
++||+.||++|+. +.||++|++++.+|.+. | .+...+++.+
T Consensus 171 ~~GI~tDTg~F~~--~~Tt~~t~~aaa~L~~~-G-ad~~~i~~~l 211 (343)
T 3dma_A 171 YTGMMTDTGGFTY--NSNNREIYFIISELLSK-G-IDKDDIYRKV 211 (343)
T ss_dssp HHHHHHHTTTTTS--SCCCHHHHHHHHHHHTT-T-CCHHHHHHHH
T ss_pred HHHHHHHccCCCC--CCCCHHHHHHHHHHHHc-C-CCHHHHHHHH
Confidence 9999999999995 67999999999999883 3 2455555544
No 7
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus}
Probab=99.41 E-value=1.9e-12 Score=110.71 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=73.3
Q ss_pred CeeeccccchHhhhc---CCCeEEEEecCCCCCC-------Ccc-CcchHHHHHHHHhhh--ccCCCCcHHHHHHHHhhH
Q 038722 57 SLLFADEVDLEILLM---TGQLSIVVVGQDVLRT-------NAE-VGSQCTILTDNSCED--AYDLLQTPVLKKILLAGI 123 (181)
Q Consensus 57 ~Lif~dd~~~~~l~~---~~~~~~~LVDHn~l~~-------~~~-vGSc~TLV~~~~~~~--~~~~l~~~~~a~LLl~aI 123 (181)
.++.+|--+...+.. .....++++|||..+. .+| +||||++|++++... ..+ + ++++|++|++||
T Consensus 78 lvi~VD~~~~~r~~~~~~~~~~~vivIDHH~~~~~~~~~~~i~p~~~St~eiv~~~~~~~~~~~~-i-~~~~A~~L~~GI 155 (320)
T 3dev_A 78 LVIVCDTANAPRIDDQRYLNGQSLIKIDHHPATDQYGDVNFVNTEASSTSEIIFDFISHFNDLSI-I-DEHVARVLYLGI 155 (320)
T ss_dssp EEEEESCSSGGGBSSGGGGSSSCEEEEECSCSSCCCSSEEEECTTSSCHHHHHHHHHHTTTCTTT-C-CHHHHHHHHHHH
T ss_pred EEEEECCCCchhcchhhhhccCCEEEEcCCCCCCCCCCeEEEecCCCcHHHHHHHHHHHhccCCC-C-CHHHHHHHHHHH
Confidence 355666544433211 1123578899998764 255 999999999999643 233 3 589999999999
Q ss_pred HhhhcCCCCCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHh
Q 038722 124 LLDTHNLDSYSSLSTSRDAEAVQLLSIGSSPNYRNNLFDQY 164 (181)
Q Consensus 124 L~DT~nl~~~~~k~t~~D~~~~~~L~~~~~~~~r~~lf~~L 164 (181)
+.||++|+. ++||++|.+++.+|.+. | .+...+++.+
T Consensus 156 ~tDTg~F~~--~~tt~~t~~aaa~L~~~-G-ad~~~i~~~l 192 (320)
T 3dev_A 156 VGDTGRFLF--SNTSPHTMEVASQLLAY-P-FNHNAELNKM 192 (320)
T ss_dssp HHHTTTTTS--TTCCHHHHHHHHHHHHS-S-SCHHHHHHHH
T ss_pred HHHccCcCC--CCCCHHHHHHHHHHHHc-C-CCHHHHHHHH
Confidence 999999995 68999999999999873 3 2455555444
No 8
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=96.29 E-value=0.0097 Score=55.26 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=40.7
Q ss_pred CCeeeccccchHh--h--hcCCCeEEEEecCCCCCCC-------ccC-cc------hH-----HHHHHHHhhhccCCCCc
Q 038722 56 NSLLFADEVDLEI--L--LMTGQLSIVVVGQDVLRTN-------AEV-GS------QC-----TILTDNSCEDAYDLLQT 112 (181)
Q Consensus 56 ~~Lif~dd~~~~~--l--~~~~~~~~~LVDHn~l~~~-------~~v-GS------c~-----TLV~~~~~~~~~~~l~~ 112 (181)
+.+|++|--.... . ......+++++|||..+.. +|- .| |+ .||.+.+.+...++ +
T Consensus 130 ~LIItVD~G~~s~~~i~~a~~~g~~VIViDHH~~~~~~p~a~iVnP~~~s~~~k~L~gaGVaf~Lv~aL~~~l~~~~--~ 207 (666)
T 2zxr_A 130 DLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALHERLGLPP--P 207 (666)
T ss_dssp CEEEESCCC--------------CEEEEECCCC--------CEECGGGSTTCCCCCCHHHHHHHHHHHHHHHTTCCC--C
T ss_pred CEEEEEcCCchhhhhHHHHHhCCCCEEEECCcCCCCcCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHcCCCC--C
Confidence 4566776532211 1 1123468999999986531 332 23 44 34445444333232 4
Q ss_pred HHHHHHHHhhHHhhhcCCC
Q 038722 113 PVLKKILLAGILLDTHNLD 131 (181)
Q Consensus 113 ~~~a~LLl~aIL~DT~nl~ 131 (181)
.+++.+++.+|+.||++|+
T Consensus 208 ~~~adlvalGivaDt~~L~ 226 (666)
T 2zxr_A 208 LEYADLAAVGTIADVAPLW 226 (666)
T ss_dssp GGGHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 6899999999999999996
No 9
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=21.16 E-value=94 Score=21.56 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=24.5
Q ss_pred ceEEEeeeccccCCCCchHHHHHHHHcCCC
Q 038722 25 YVVVPVMNIKRSNMWKHYQAAWLFHHVGLD 54 (181)
Q Consensus 25 ~~~vPvini~r~d~~lr~E~~~ll~~~~I~ 54 (181)
...+-++|||.+ .|+.|+....+..|-+
T Consensus 12 nclikiinipqg--tlkaevvlavrhlgye 39 (129)
T 4eyt_A 12 NCLIKIINIPQG--TLKAEVVLAVRHLGYE 39 (129)
T ss_dssp SCEEEEECCCTT--CCHHHHHHHHHTTCCC
T ss_pred CcEEEEEecCCC--ceeeeeEEeehhcCee
Confidence 458999999998 5999999999999864
No 10
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=20.46 E-value=74 Score=19.24 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=9.5
Q ss_pred cCHHHHHHhhcCC
Q 038722 165 GSVLEAMRHSYGM 177 (181)
Q Consensus 165 ls~~dlLrrDyK~ 177 (181)
-|+.|||||=++-
T Consensus 23 EsaSdiLRRll~l 35 (50)
T 1xrx_A 23 ESASDILRRMLKF 35 (50)
T ss_dssp CCHHHHHHHHHTC
T ss_pred cCHHHHHHHHHcC
Confidence 5788888886653
Done!