BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038724
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Query: 292 ALKWL-GLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLN 348
ALK L L + L NQ+++L N +L L L +N LQ + +G F + L LN
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 349 LSYNRFLTKLPSGI-SKLVSLQHLDISF 375
L++N+ L LP G+ KL +L LD+S+
Sbjct: 140 LAHNQ-LQSLPKGVFDKLTNLTELDLSY 166
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 294 KWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSY 351
K L+ + L+ NQ+++L + +L L L N LQ + G F + L L+LSY
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 352 NRFLTKLPSGI-SKLVSLQHL 371
N+ L LP G+ KL L+ L
Sbjct: 167 NQ-LQSLPEGVFDKLTQLKDL 186
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 294 KWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSY 351
K L ++L +NQ+++L +L L L+ N LQ + G F + LK L L Y
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL-Y 189
Query: 352 NRFLTKLPSGI-SKLVSLQHL 371
L +P G+ +L SLQ++
Sbjct: 190 QNQLKSVPDGVFDRLTSLQYI 210
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 298 LRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFL 355
L ++SL NQI++L + L L+L++N LQ + NG F + LK L L N+ L
Sbjct: 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-L 112
Query: 356 TKLPSGI-SKLVSLQHL 371
+P GI +L SLQ +
Sbjct: 113 KSVPDGIFDRLTSLQKI 129
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 297 GLRRMSLMNNQI----KTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYN 352
++ +SL NNQ+ ++ + +L L L+ N L D+ NG F ++P L+ L+L YN
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 353 RFLTKLPSGISKLVSLQHLDI 373
P L +L++L +
Sbjct: 283 NIQRLSPRSFYGLSNLRYLSL 303
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 292 ALKWLGLRRM-----SLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346
+LK+L L + +L N +L ++P LLTL L N++ I NG F ++ L++
Sbjct: 354 SLKYLSLSKTFTSLQTLTNETFVSLAHSP----LLTLNLTKNHISKIANGTFSWLGQLRI 409
Query: 347 LNLSYNRFLTKL 358
L+L N KL
Sbjct: 410 LDLGLNEIEQKL 421
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 299 RRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLT 356
R + L N+IKTL S PHL L LN+N + ++ G F + L+ L L NR L
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LK 93
Query: 357 KLPSGI-SKLVSLQHLDIS 374
+P G+ + L +L LDIS
Sbjct: 94 LIPLGVFTGLSNLTKLDIS 112
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 301 MSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKL 358
+ L N +K+L N L L+L N LQ + NG F + L LNLS N+ L L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSL 91
Query: 359 PSGI-SKLVSLQHLDIS 374
P+G+ KL L+ L ++
Sbjct: 92 PNGVFDKLTQLKELALN 108
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 294 KWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSY 351
K L ++L NQ+++L N L L LN N LQ + +G F + LK L L Y
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-Y 132
Query: 352 NRFLTKLPSGI-SKLVSLQHL 371
L +P G+ +L SLQ++
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYI 153
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 320 LLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQ 369
L L L N ++ I+NG F+P L+ L+L N+ L+++P+G+ L LQ
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQ 267
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 287 VVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346
++P L L L R L Q+ L P L TL L+ N LQ + Q +P L V
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTL-----PVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 347 LNLSYNRFLTKLPSG-ISKLVSLQHL 371
L++S+NR LT LP G + L LQ L
Sbjct: 105 LDVSFNR-LTSLPLGALRGLGELQEL 129
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 287 VVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346
++P L L L R L Q+ L P L TL L+ N LQ + Q +P L V
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTL-----PVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 347 LNLSYNRFLTKLPSG-ISKLVSLQHL 371
L++S+NR LT LP G + L LQ L
Sbjct: 105 LDVSFNR-LTSLPLGALRGLGELQEL 129
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 287 VVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346
++P L L L R L Q+ L P L TL L+ N LQ + Q +P L V
Sbjct: 51 LMPYTRLTQLNLDRAELTKLQVDGTL-----PVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 347 LNLSYNRFLTKLPSG-ISKLVSLQHL 371
L++S+NR LT LP G + L LQ L
Sbjct: 105 LDVSFNR-LTSLPLGALRGLGELQEL 129
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 319 HLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGI-SKLVSLQHL 371
+L ++ N L+ + G F MP LK LNL+ N+ L +P GI +L SLQ +
Sbjct: 171 NLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ-LKSVPDGIFDRLTSLQKI 223
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 287 VVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346
++P L L L R L Q+ L P L TL L+ N LQ + Q +P L V
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTL-----PVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 347 LNLSYNRFLTKLPSG-ISKLVSLQHL 371
L++S+NR LT LP G + L LQ L
Sbjct: 105 LDVSFNR-LTSLPLGALRGLGELQEL 129
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 287 VVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346
++P L L L R L Q+ L P L TL L+ N LQ + Q +P L V
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTL-----PVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 347 LNLSYNRFLTKLPSG-ISKLVSLQHL 371
L++S+NR LT LP G + L LQ L
Sbjct: 105 LDVSFNR-LTSLPLGALRGLGELQEL 129
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 287 VVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346
++P L L L R L Q+ L P L TL L+ N LQ + Q +P L V
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTL-----PVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 347 LNLSYNRFLTKLPSG-ISKLVSLQHL 371
L++S+NR LT LP G + L LQ L
Sbjct: 105 LDVSFNR-LTSLPLGALRGLGELQEL 129
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 298 LRRMSLMNNQIKTLLNTP-----SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYN 352
L + L NNQ+ +L P L L+L N L+ + +G F + LK L L+ N
Sbjct: 85 LGTLGLANNQLASL---PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 353 RFLTKLPSG-ISKLVSLQHLDIS 374
+ L +P+G KL +LQ L +S
Sbjct: 142 Q-LQSIPAGAFDKLTNLQTLSLS 163
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 298 LRRMSLMNNQIKTLLNTP-----SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYN 352
L + L NNQ+ +L P L L+L N L+ + +G F + LK L L+ N
Sbjct: 85 LGTLGLANNQLASL---PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 353 RFLTKLPSG-ISKLVSLQHLDIS 374
+ L +P+G KL +LQ L +S
Sbjct: 142 Q-LQSIPAGAFDKLTNLQTLSLS 163
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 298 LRRMSLMNNQIKTLLNTP--SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNR 353
L +++L N+I + + HLL L L+ N+L I + F+ + L+VL+LSYN
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 287 VVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCL 344
+VP + + L + L NN+I TL N + LLTL L+ N L+ I F + L
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 345 KVLNLSYNRFLTKLPSGISKLVSLQHLDIS 374
++L+L N + L +L HL I
Sbjct: 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIG 134
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 292 ALKWL-GLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLN 348
ALK L L + L NQ+++L N +L L L +N LQ + +G F + L L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 349 LSYNRFLTKLPSGI-SKLVSLQHLDI 373
L +N+ L LP G+ KL +L LD+
Sbjct: 140 LYHNQ-LQSLPKGVFDKLTNLTRLDL 164
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 294 KWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSY 351
K L+ + L+ NQ+++L + +L L+L N LQ + G F + L L+L
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 352 NRFLTKLPSGI-SKLVSLQHLDIS 374
N+ L LP G+ KL L+ L ++
Sbjct: 167 NQ-LQSLPEGVFDKLTQLKQLSLN 189
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 294 KWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSY 351
K L + L +NQ+++L +L L L++N LQ + G F + LK L+L+
Sbjct: 131 KLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 352 NRFLTKLPSGI-SKLVSLQHL 371
N+ L +P G+ +L SL H+
Sbjct: 191 NQ-LKSVPDGVFDRLTSLTHI 210
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 287 VVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346
++P L L L R L Q+ L P L TL L+ N LQ + Q +P L V
Sbjct: 52 LMPYTRLTQLNLDRCELTKLQVDGTL-----PVLGTLDLSHNQLQSLPL-LGQTLPALTV 105
Query: 347 LNLSYNRFLTKLPSG-ISKLVSLQHL 371
L++S+NR LT LP G + L LQ L
Sbjct: 106 LDVSFNR-LTSLPLGALRGLGELQEL 130
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 319 HLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNR 353
HL L+LN NYL + G F + L+ L+L+ NR
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 287 VVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346
++P L L L R L Q+ L P L TL L+ N LQ + Q +P L V
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTL-----PVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 347 LNLSYNRFLTKLPSG-ISKLVSLQHL 371
L++S+NR LT LP G + L LQ L
Sbjct: 105 LDVSFNR-LTSLPLGALRGLGELQEL 129
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 287 VVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346
++P L L L R L Q+ L P L TL L+ N LQ + Q +P L V
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTL-----PVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 347 LNLSYNRFLTKLPSG-ISKLVSLQHL 371
L++S+NR LT LP G + L LQ L
Sbjct: 105 LDVSFNR-LTSLPLGALRGLGELQEL 129
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 287 VVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346
++P L L L R L Q+ L P L TL L+ N LQ + Q +P L V
Sbjct: 51 LMPYTRLTQLNLDRCELTKLQVDGTL-----PVLGTLDLSHNQLQSLPL-LGQTLPALTV 104
Query: 347 LNLSYNRFLTKLPSG-ISKLVSLQHL 371
L++S+NR LT LP G + L LQ L
Sbjct: 105 LDVSFNR-LTSLPLGALRGLGELQEL 129
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
PROTEIN COMPLEX With Adpnp And One Sodium
Length = 333
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 82 LDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEVCVDCFTPQESWQVF 130
LDDL I L G LPS VS++ T+ + E QE+WQ +
Sbjct: 85 LDDLEAIISLGFRGEALPSISSVSRLTLTSRTAE-------QQEAWQAY 126
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 292 ALKWLGLRR-MSLMNNQIKTLLNTPSC------------PHLLTLFLNDN--YLQDIKNG 336
AL GLR L+ I +LN SC P LL+L L++N Y D +
Sbjct: 131 ALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS 190
Query: 337 FFQFMPCLKVLNLSYNRF 354
Q P LK+LNLS N
Sbjct: 191 IVQKAPNLKILNLSGNEL 208
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 323 LFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGI-SKLVSLQHLDIS 374
L+LN+N + ++ G F + L+ L + N+ LT +P+G+ KL L LD++
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 296 LGLRRMSLMNNQIKTLLNTP-----SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLS 350
+ L+ + L +NQ+ L P S L L L N L + + F + LK L +
Sbjct: 64 INLKELYLGSNQLGAL---PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120
Query: 351 YNRFLTKLPSGISKLVSLQHLDI 373
N+ LT+LP GI +L L HL +
Sbjct: 121 CNK-LTELPRGIERLTHLTHLAL 142
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 293 LKWLGLRRMSLMNNQIKTLLNTP--SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLS 350
L + GL + L N+++ ++ P L L++++N L + N + Q +P LKVL+LS
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLS 309
Query: 351 YNRFL 355
+N L
Sbjct: 310 HNHLL 314
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 315 PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGI-SKLVSLQHLDI 373
P+ +L L++N + ++ G F + L LNL+ N+ LT LP G+ KL L HL +
Sbjct: 39 PTTTQVLHLYINQ--ITKLEPGVFDSLTQLTYLNLAVNQ-LTALPVGVFDKLTKLTHLAL 95
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 286 DVVPSDALKWL-GLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIK 334
D+ +++L L ++L NNQI + P++ LFLN N L DIK
Sbjct: 55 DIKSVQGIQYLPNLTSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDIK 104
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 15/73 (20%)
Query: 297 GLRR-MSLMNNQIKTLLNTPSC------------PHLLTLFLNDN--YLQDIKNGFFQFM 341
GLR L+ I +LN SC P LL+L L++N Y D + Q
Sbjct: 130 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 189
Query: 342 PCLKVLNLSYNRF 354
P LK+LNLS N
Sbjct: 190 PNLKILNLSGNEL 202
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 15/73 (20%)
Query: 297 GLRR-MSLMNNQIKTLLNTPSC------------PHLLTLFLNDN--YLQDIKNGFFQFM 341
GLR L+ I +LN SC P LL+L L++N Y D + Q
Sbjct: 130 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 189
Query: 342 PCLKVLNLSYNRF 354
P LK+LNLS N
Sbjct: 190 PNLKILNLSGNEL 202
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 288 VPSDALKWL-GLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCL 344
+PS A L LR + L +N+++TL +L TL++ DN LQ + G F + L
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111
Query: 345 KVLNLSYNRFLTKLPSGISKLVSLQHLDISFT 376
L L N+ + P L L +L + +
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 341 MPCLKVLNLSYNRFLTKLPSGISKL-VSLQHLDIS 374
M LKVL+LS+N F +LP ++ L SL LD+S
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 341 MPCLKVLNLSYNRFLTKLPSGISKL-VSLQHLDIS 374
M LKVL+LS+N F +LP ++ L SL LD+S
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 330 LQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISF 375
L+ I G F + L++LN+S+N L S ++L SL LD SF
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 316 SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISF 375
S L L ++ N +Q + F+F L+ L+LS+N+ L K+ V+L+HLD+SF
Sbjct: 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKI--SCHPTVNLKHLDLSF 99
Query: 376 TS 377
+
Sbjct: 100 NA 101
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 330 LQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISF 375
L+ I G F + L++LN+S+N L S ++L SL LD SF
Sbjct: 480 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 525
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,790,904
Number of Sequences: 62578
Number of extensions: 471236
Number of successful extensions: 1075
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 199
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)