Query 038724
Match_columns 483
No_of_seqs 304 out of 2747
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 02:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-67 4.6E-72 547.4 24.2 401 1-404 161-633 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.3E-47 4.9E-52 418.2 28.4 375 1-404 187-696 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2E-42 4.4E-47 326.7 11.9 246 3-251 1-286 (287)
4 KOG0617 Ras suppressor protein 99.6 4.2E-17 9E-22 132.4 -4.3 143 295-439 32-188 (264)
5 PLN00113 leucine-rich repeat r 99.5 1.5E-14 3.3E-19 159.3 10.3 163 294-456 116-297 (968)
6 KOG0617 Ras suppressor protein 99.5 8.5E-16 1.8E-20 124.8 -2.6 115 291-406 51-167 (264)
7 KOG0444 Cytoskeletal regulator 99.5 2.2E-15 4.7E-20 145.3 -1.1 176 288-464 95-289 (1255)
8 KOG4194 Membrane glycoprotein 99.5 1.5E-14 3.1E-19 138.7 3.6 195 288-482 117-335 (873)
9 KOG4194 Membrane glycoprotein 99.5 6.6E-15 1.4E-19 141.0 1.1 155 294-456 267-429 (873)
10 PLN00113 leucine-rich repeat r 99.5 8E-14 1.7E-18 153.6 9.3 174 284-457 176-370 (968)
11 KOG0444 Cytoskeletal regulator 99.4 3.2E-14 7E-19 137.4 -0.1 165 291-457 73-259 (1255)
12 PF14580 LRR_9: Leucine-rich r 99.3 5.8E-13 1.3E-17 113.1 2.2 134 304-451 5-148 (175)
13 PF01637 Arch_ATPase: Archaeal 99.2 9.4E-12 2E-16 113.6 5.5 160 1-165 2-233 (234)
14 PF14580 LRR_9: Leucine-rich r 99.2 2.1E-11 4.5E-16 103.6 5.4 129 295-434 18-150 (175)
15 KOG0472 Leucine-rich repeat pr 99.2 4.6E-13 1E-17 123.1 -4.9 178 294-475 112-306 (565)
16 PRK04841 transcriptional regul 99.2 1.7E-10 3.7E-15 126.6 14.0 202 2-227 18-279 (903)
17 KOG0472 Leucine-rich repeat pr 99.1 5.4E-13 1.2E-17 122.6 -8.2 125 298-436 93-218 (565)
18 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.4E-16 109.9 -0.0 132 294-439 282-414 (490)
19 PRK15387 E3 ubiquitin-protein 99.1 3.3E-10 7.2E-15 117.5 10.2 148 296-456 222-375 (788)
20 COG2256 MGS1 ATPase related to 99.1 2.5E-09 5.3E-14 99.5 14.5 196 9-212 38-265 (436)
21 TIGR03015 pepcterm_ATPase puta 99.1 9.1E-09 2E-13 96.1 18.4 149 18-170 42-242 (269)
22 PRK00080 ruvB Holliday junctio 99.1 1.8E-09 4E-14 103.3 13.6 209 1-228 28-275 (328)
23 PRK15370 E3 ubiquitin-protein 99.0 5.4E-10 1.2E-14 116.5 8.7 153 296-459 199-362 (754)
24 KOG4237 Extracellular matrix p 99.0 1.6E-11 3.4E-16 112.9 -2.7 103 297-400 68-175 (498)
25 TIGR00635 ruvB Holliday juncti 99.0 3.7E-09 7.9E-14 100.6 12.6 159 1-168 7-203 (305)
26 PRK15387 E3 ubiquitin-protein 99.0 1.1E-09 2.5E-14 113.6 9.7 76 319-405 283-358 (788)
27 PLN03210 Resistant to P. syrin 99.0 2.1E-09 4.6E-14 119.5 12.4 107 295-404 610-719 (1153)
28 KOG0618 Serine/threonine phosp 99.0 2.4E-11 5.2E-16 122.9 -2.7 126 297-435 360-487 (1081)
29 KOG0618 Serine/threonine phosp 99.0 3.8E-11 8.2E-16 121.6 -1.5 154 288-455 302-488 (1081)
30 PF05729 NACHT: NACHT domain 99.0 1.5E-09 3.2E-14 93.3 8.7 114 20-134 1-163 (166)
31 KOG0532 Leucine-rich repeat (L 99.0 9.7E-12 2.1E-16 119.4 -5.5 135 288-437 113-247 (722)
32 PRK15370 E3 ubiquitin-protein 99.0 7.3E-10 1.6E-14 115.6 7.5 152 296-458 220-382 (754)
33 PRK00411 cdc6 cell division co 98.9 1.5E-08 3.1E-13 100.2 12.9 165 1-168 33-257 (394)
34 PRK07003 DNA polymerase III su 98.9 2.4E-08 5.1E-13 101.5 13.9 163 1-166 19-221 (830)
35 COG3899 Predicted ATPase [Gene 98.9 5.2E-09 1.1E-13 111.3 9.7 221 1-230 3-325 (849)
36 PRK13342 recombination factor 98.9 1.1E-08 2.4E-13 100.9 11.2 158 1-167 15-197 (413)
37 PRK04195 replication factor C 98.9 8.8E-08 1.9E-12 96.5 16.8 154 1-165 17-201 (482)
38 PLN03025 replication factor C 98.9 3.1E-08 6.7E-13 94.5 12.6 158 1-163 16-197 (319)
39 KOG0532 Leucine-rich repeat (L 98.8 1.2E-10 2.5E-15 112.1 -4.0 169 292-476 94-270 (722)
40 PRK06893 DNA replication initi 98.8 1.3E-08 2.9E-13 91.9 8.7 142 17-167 37-204 (229)
41 PRK12323 DNA polymerase III su 98.8 8.6E-08 1.9E-12 96.2 14.9 163 1-166 19-225 (700)
42 PRK14960 DNA polymerase III su 98.8 8.1E-08 1.8E-12 96.6 14.6 161 1-164 18-217 (702)
43 PLN03150 hypothetical protein; 98.8 1.1E-08 2.5E-13 106.0 8.7 107 319-436 419-527 (623)
44 TIGR03420 DnaA_homol_Hda DnaA 98.8 2.8E-08 6E-13 90.2 10.2 155 4-167 23-202 (226)
45 PF05496 RuvB_N: Holliday junc 98.8 1.6E-07 3.5E-12 81.8 14.0 162 1-171 27-226 (233)
46 PRK12402 replication factor C 98.8 7.4E-08 1.6E-12 93.1 13.4 159 1-164 18-224 (337)
47 cd00009 AAA The AAA+ (ATPases 98.8 2.1E-08 4.5E-13 84.2 8.3 111 1-114 1-130 (151)
48 PRK14961 DNA polymerase III su 98.8 1.2E-07 2.6E-12 91.9 14.6 160 1-163 19-217 (363)
49 PF13855 LRR_8: Leucine rich r 98.8 5.6E-09 1.2E-13 72.9 3.9 59 319-377 2-60 (61)
50 PRK05564 DNA polymerase III su 98.8 1.3E-07 2.9E-12 89.9 14.3 157 1-164 7-188 (313)
51 PRK00440 rfc replication facto 98.8 1.8E-07 3.8E-12 89.8 15.0 158 1-163 20-200 (319)
52 PRK14949 DNA polymerase III su 98.8 1.4E-07 3.1E-12 97.9 14.4 163 1-166 19-220 (944)
53 cd00116 LRR_RI Leucine-rich re 98.8 1.6E-09 3.6E-14 103.8 0.3 152 297-459 109-294 (319)
54 KOG1259 Nischarin, modulator o 98.8 2.1E-09 4.5E-14 95.7 0.9 124 317-456 283-412 (490)
55 PRK08691 DNA polymerase III su 98.7 2.2E-07 4.8E-12 94.4 15.0 162 1-165 19-219 (709)
56 TIGR02928 orc1/cdc6 family rep 98.7 1.6E-07 3.4E-12 91.9 13.4 163 1-163 18-243 (365)
57 cd00116 LRR_RI Leucine-rich re 98.7 6.8E-09 1.5E-13 99.6 3.5 160 291-457 76-264 (319)
58 PRK14963 DNA polymerase III su 98.7 2.6E-07 5.6E-12 92.6 14.5 160 1-164 17-215 (504)
59 PF13173 AAA_14: AAA domain 98.7 1.8E-08 3.8E-13 82.3 5.0 94 20-117 3-102 (128)
60 PRK14964 DNA polymerase III su 98.7 3.3E-07 7.2E-12 90.7 14.7 161 1-164 16-215 (491)
61 PF13855 LRR_8: Leucine rich r 98.7 1.4E-08 3.1E-13 70.8 3.5 59 342-400 1-60 (61)
62 PRK06645 DNA polymerase III su 98.7 4.5E-07 9.7E-12 90.5 15.2 160 1-163 24-226 (507)
63 COG2909 MalT ATP-dependent tra 98.7 2.4E-07 5.3E-12 94.2 13.1 198 9-227 26-285 (894)
64 PRK14956 DNA polymerase III su 98.7 3.7E-07 8E-12 89.3 14.1 161 1-164 21-220 (484)
65 KOG2028 ATPase related to the 98.7 1.6E-07 3.5E-12 86.1 10.7 145 9-161 152-331 (554)
66 PLN03150 hypothetical protein; 98.7 6.4E-08 1.4E-12 100.5 9.2 107 297-403 419-529 (623)
67 KOG4237 Extracellular matrix p 98.7 3.5E-09 7.5E-14 97.8 -0.4 140 301-452 51-197 (498)
68 PRK14957 DNA polymerase III su 98.7 5E-07 1.1E-11 90.8 14.7 163 1-166 19-221 (546)
69 PRK14958 DNA polymerase III su 98.7 4.9E-07 1.1E-11 90.8 14.5 162 1-165 19-219 (509)
70 KOG3207 Beta-tubulin folding c 98.6 6.9E-09 1.5E-13 97.1 1.0 156 291-453 167-336 (505)
71 TIGR02397 dnaX_nterm DNA polym 98.6 7.8E-07 1.7E-11 86.6 15.3 163 1-167 17-219 (355)
72 COG4886 Leucine-rich repeat (L 98.6 1.5E-08 3.3E-13 100.2 3.3 159 296-456 116-290 (394)
73 TIGR00678 holB DNA polymerase 98.6 5.3E-07 1.2E-11 79.1 12.7 143 9-161 3-186 (188)
74 PRK14955 DNA polymerase III su 98.6 7.5E-07 1.6E-11 87.4 14.8 161 1-165 19-227 (397)
75 PRK05896 DNA polymerase III su 98.6 6.5E-07 1.4E-11 90.1 13.9 163 1-167 19-222 (605)
76 PRK14969 DNA polymerase III su 98.6 9.3E-07 2E-11 89.5 15.3 160 1-163 19-217 (527)
77 KOG0989 Replication factor C, 98.6 2.4E-07 5.3E-12 83.3 9.7 156 1-160 39-224 (346)
78 PRK08727 hypothetical protein; 98.6 3.2E-07 6.9E-12 83.1 10.6 150 6-163 28-201 (233)
79 PRK07994 DNA polymerase III su 98.6 6.8E-07 1.5E-11 91.2 13.4 163 1-166 19-220 (647)
80 PRK07940 DNA polymerase III su 98.6 1.1E-06 2.4E-11 85.2 14.0 155 1-164 8-211 (394)
81 PRK14951 DNA polymerase III su 98.6 9.5E-07 2.1E-11 90.0 14.0 163 1-166 19-225 (618)
82 KOG1859 Leucine-rich repeat pr 98.6 1.5E-09 3.3E-14 107.3 -5.8 131 294-438 162-293 (1096)
83 PRK14962 DNA polymerase III su 98.6 1.3E-06 2.7E-11 87.0 14.3 167 1-170 17-223 (472)
84 KOG0991 Replication factor C, 98.6 5.3E-07 1.2E-11 77.7 9.8 89 1-90 30-127 (333)
85 PRK09111 DNA polymerase III su 98.5 1.4E-06 3E-11 89.0 14.3 164 1-167 27-234 (598)
86 PRK13341 recombination factor 98.5 7E-07 1.5E-11 93.0 12.4 154 1-163 31-214 (725)
87 PRK07471 DNA polymerase III su 98.5 1.2E-06 2.6E-11 84.3 12.9 159 1-166 22-238 (365)
88 COG4886 Leucine-rich repeat (L 98.5 3.4E-08 7.4E-13 97.7 2.1 130 294-438 161-291 (394)
89 PRK08084 DNA replication initi 98.5 6.7E-07 1.5E-11 81.1 10.3 154 5-167 31-210 (235)
90 PRK07764 DNA polymerase III su 98.5 1.7E-06 3.7E-11 91.3 14.5 159 1-163 18-218 (824)
91 PRK14970 DNA polymerase III su 98.5 2.4E-06 5.2E-11 83.4 14.4 160 1-163 20-206 (367)
92 PRK08903 DnaA regulatory inact 98.5 1.6E-06 3.4E-11 78.7 12.0 153 6-170 28-203 (227)
93 PRK14959 DNA polymerase III su 98.5 3.1E-06 6.7E-11 85.8 14.7 166 1-170 19-225 (624)
94 cd01128 rho_factor Transcripti 98.5 3.9E-07 8.5E-12 82.6 7.5 68 19-88 16-115 (249)
95 PRK14952 DNA polymerase III su 98.5 4.5E-06 9.7E-11 84.8 15.5 162 1-166 16-220 (584)
96 KOG0531 Protein phosphatase 1, 98.5 5.1E-08 1.1E-12 96.6 1.5 162 292-457 91-269 (414)
97 PRK14971 DNA polymerase III su 98.5 3.6E-06 7.9E-11 86.5 14.9 159 1-163 20-219 (614)
98 PRK06305 DNA polymerase III su 98.5 4.5E-06 9.7E-11 83.0 15.0 159 1-163 20-219 (451)
99 PRK08451 DNA polymerase III su 98.4 4.5E-06 9.8E-11 83.5 14.7 162 1-166 17-218 (535)
100 PRK14954 DNA polymerase III su 98.4 4.6E-06 9.9E-11 85.4 14.9 157 1-161 19-223 (620)
101 KOG3207 Beta-tubulin folding c 98.4 3.8E-08 8.3E-13 92.2 -0.2 157 290-456 140-314 (505)
102 PRK09112 DNA polymerase III su 98.4 5.2E-06 1.1E-10 79.5 14.2 161 1-166 26-240 (351)
103 PRK07133 DNA polymerase III su 98.4 5.5E-06 1.2E-10 85.3 14.8 159 1-163 21-216 (725)
104 PRK09376 rho transcription ter 98.4 4.1E-07 9E-12 86.1 6.1 67 20-88 170-268 (416)
105 COG3903 Predicted ATPase [Gene 98.4 1.2E-07 2.6E-12 89.0 2.1 207 19-230 14-256 (414)
106 PRK05642 DNA replication initi 98.4 3E-06 6.5E-11 76.8 10.5 139 20-167 46-209 (234)
107 PRK14953 DNA polymerase III su 98.4 1E-05 2.2E-10 80.9 15.0 164 1-167 19-221 (486)
108 TIGR03345 VI_ClpV1 type VI sec 98.4 2.6E-06 5.6E-11 91.0 11.4 158 1-160 190-390 (852)
109 PRK14948 DNA polymerase III su 98.4 8.9E-06 1.9E-10 83.7 14.9 162 1-166 19-222 (620)
110 PRK14950 DNA polymerase III su 98.4 9.3E-06 2E-10 83.7 15.1 162 1-166 19-221 (585)
111 PRK06647 DNA polymerase III su 98.3 1.4E-05 3.1E-10 81.3 15.8 161 1-165 19-219 (563)
112 PRK09087 hypothetical protein; 98.3 3.3E-06 7.1E-11 75.9 9.4 132 19-167 44-196 (226)
113 TIGR01242 26Sp45 26S proteasom 98.3 1.6E-06 3.4E-11 84.4 7.6 153 1-160 125-328 (364)
114 PF12799 LRR_4: Leucine Rich r 98.3 8.6E-07 1.9E-11 56.6 3.4 39 366-404 1-39 (44)
115 PRK05563 DNA polymerase III su 98.3 2.4E-05 5.2E-10 80.0 15.5 160 1-164 19-218 (559)
116 KOG4658 Apoptotic ATPase [Sign 98.3 5.8E-07 1.3E-11 95.7 3.6 104 295-400 544-653 (889)
117 PF14516 AAA_35: AAA-like doma 98.3 2.4E-05 5.2E-10 74.9 14.3 161 1-172 14-245 (331)
118 PTZ00112 origin recognition co 98.2 9.3E-06 2E-10 83.8 11.7 43 1-43 758-805 (1164)
119 PHA02544 44 clamp loader, smal 98.2 5.9E-06 1.3E-10 79.0 10.0 107 1-114 24-141 (316)
120 PRK14965 DNA polymerase III su 98.2 2.3E-05 4.9E-10 80.5 14.7 162 1-166 19-221 (576)
121 TIGR02903 spore_lon_C ATP-depe 98.2 2E-05 4.3E-10 81.5 14.0 43 1-43 157-199 (615)
122 PRK11331 5-methylcytosine-spec 98.2 3.9E-06 8.4E-11 81.4 8.2 84 2-88 179-284 (459)
123 KOG0531 Protein phosphatase 1, 98.2 3.4E-07 7.4E-12 90.8 0.8 106 295-404 71-177 (414)
124 KOG4579 Leucine-rich repeat (L 98.2 1.2E-07 2.7E-12 74.8 -1.8 103 301-404 32-138 (177)
125 PRK10865 protein disaggregatio 98.2 1.2E-05 2.6E-10 86.3 12.0 88 1-88 181-283 (857)
126 TIGR03346 chaperone_ClpB ATP-d 98.2 1E-05 2.2E-10 87.1 11.2 133 1-134 176-349 (852)
127 TIGR02881 spore_V_K stage V sp 98.2 8.2E-06 1.8E-10 75.5 8.8 26 18-43 41-66 (261)
128 PRK03992 proteasome-activating 98.2 1.3E-05 2.8E-10 78.4 10.6 150 1-160 134-337 (389)
129 TIGR02639 ClpA ATP-dependent C 98.2 6.1E-06 1.3E-10 87.5 8.8 43 1-43 185-227 (731)
130 PF05673 DUF815: Protein of un 98.1 5.5E-05 1.2E-09 67.1 12.8 81 1-86 30-116 (249)
131 TIGR00767 rho transcription te 98.1 8.6E-06 1.9E-10 77.7 7.4 67 20-88 169-267 (415)
132 PRK06620 hypothetical protein; 98.1 2.6E-05 5.7E-10 69.5 10.1 124 20-163 45-186 (214)
133 CHL00095 clpC Clp protease ATP 98.1 1.1E-05 2.4E-10 86.6 9.0 43 1-43 182-224 (821)
134 KOG1644 U2-associated snRNP A' 98.1 6.6E-06 1.4E-10 69.7 5.6 105 295-400 41-151 (233)
135 CHL00181 cbbX CbbX; Provisiona 98.1 2.2E-05 4.8E-10 73.2 9.6 114 20-135 60-210 (287)
136 COG1474 CDC6 Cdc6-related prot 98.1 0.0001 2.2E-09 71.0 14.3 87 1-88 20-135 (366)
137 KOG1644 U2-associated snRNP A' 98.1 4.4E-06 9.5E-11 70.8 4.1 126 299-434 22-150 (233)
138 PRK08058 DNA polymerase III su 98.0 5.1E-05 1.1E-09 72.5 12.0 130 3-132 11-180 (329)
139 PRK05707 DNA polymerase III su 98.0 6.2E-05 1.3E-09 71.5 12.4 140 19-166 22-203 (328)
140 TIGR02880 cbbX_cfxQ probable R 98.0 2.3E-05 5E-10 73.2 9.1 114 21-136 60-210 (284)
141 TIGR00362 DnaA chromosomal rep 98.0 0.00013 2.9E-09 72.1 14.7 139 20-165 137-309 (405)
142 PF12799 LRR_4: Leucine Rich r 98.0 5.7E-06 1.2E-10 52.8 3.2 39 343-382 2-40 (44)
143 PF00308 Bac_DnaA: Bacterial d 98.0 1.2E-05 2.7E-10 71.9 6.5 141 19-166 34-208 (219)
144 PF13191 AAA_16: AAA ATPase do 98.0 5.4E-06 1.2E-10 72.5 3.9 43 1-43 3-48 (185)
145 PRK07399 DNA polymerase III su 98.0 0.00017 3.6E-09 68.2 14.0 158 1-165 7-220 (314)
146 PRK14087 dnaA chromosomal repl 98.0 5.8E-05 1.2E-09 75.1 11.3 147 20-170 142-323 (450)
147 PTZ00361 26 proteosome regulat 98.0 2.8E-05 6.1E-10 76.4 8.8 149 2-160 187-389 (438)
148 TIGR03689 pup_AAA proteasome A 98.0 3.7E-05 8.1E-10 76.7 9.6 86 2-87 186-300 (512)
149 COG1373 Predicted ATPase (AAA+ 98.0 5.9E-05 1.3E-09 73.8 10.9 116 5-129 24-162 (398)
150 PF13401 AAA_22: AAA domain; P 98.0 4.5E-06 9.8E-11 68.4 2.5 93 19-113 4-125 (131)
151 PRK08769 DNA polymerase III su 97.9 5.4E-05 1.2E-09 71.3 9.9 151 5-165 11-207 (319)
152 COG1222 RPT1 ATP-dependent 26S 97.9 6.8E-05 1.5E-09 69.4 10.2 158 2-171 155-372 (406)
153 COG2255 RuvB Holliday junction 97.9 0.00021 4.6E-09 64.1 12.6 161 1-170 29-227 (332)
154 PRK11034 clpA ATP-dependent Cl 97.9 4.9E-05 1.1E-09 79.9 10.0 132 1-134 189-362 (758)
155 CHL00176 ftsH cell division pr 97.9 6.8E-05 1.5E-09 77.4 10.7 130 19-158 216-386 (638)
156 PRK15386 type III secretion pr 97.9 3.6E-05 7.7E-10 74.0 7.1 80 295-385 51-134 (426)
157 KOG1859 Leucine-rich repeat pr 97.9 5.4E-07 1.2E-11 89.8 -5.3 121 318-455 164-291 (1096)
158 PRK00149 dnaA chromosomal repl 97.8 0.00019 4.2E-09 71.9 12.4 140 20-166 149-322 (450)
159 PTZ00454 26S protease regulato 97.8 6.6E-05 1.4E-09 73.2 8.5 149 2-160 149-351 (398)
160 TIGR01241 FtsH_fam ATP-depende 97.8 8.1E-05 1.8E-09 75.6 9.4 132 19-160 88-260 (495)
161 KOG3665 ZYG-1-like serine/thre 97.8 8E-06 1.7E-10 84.9 2.1 135 295-436 121-262 (699)
162 KOG1909 Ran GTPase-activating 97.8 1E-05 2.2E-10 74.3 2.1 132 318-456 157-311 (382)
163 PRK14088 dnaA chromosomal repl 97.8 0.00011 2.3E-09 73.1 9.5 142 19-166 130-305 (440)
164 PRK15386 type III secretion pr 97.8 5.8E-05 1.3E-09 72.5 7.1 59 295-361 71-133 (426)
165 PRK10536 hypothetical protein; 97.8 6.3E-05 1.4E-09 67.6 6.9 40 2-43 59-98 (262)
166 PRK06871 DNA polymerase III su 97.8 0.00068 1.5E-08 64.0 13.9 148 7-163 11-200 (325)
167 PTZ00202 tuzin; Provisional 97.7 0.00012 2.7E-09 70.1 8.7 43 1-43 265-310 (550)
168 KOG3665 ZYG-1-like serine/thre 97.7 1.6E-05 3.4E-10 82.7 2.9 111 289-401 141-262 (699)
169 KOG1909 Ran GTPase-activating 97.7 1.8E-05 3.8E-10 72.7 2.6 157 294-458 90-285 (382)
170 PF05621 TniB: Bacterial TniB 97.7 0.0006 1.3E-08 62.7 12.3 160 5-164 44-259 (302)
171 PF00004 AAA: ATPase family as 97.7 9.8E-06 2.1E-10 66.5 0.7 61 22-88 1-70 (132)
172 PF13177 DNA_pol3_delta2: DNA 97.7 0.00011 2.4E-09 62.4 6.9 114 2-116 1-144 (162)
173 PRK14086 dnaA chromosomal repl 97.7 0.00017 3.6E-09 73.1 8.9 140 20-166 315-488 (617)
174 smart00382 AAA ATPases associa 97.7 8.7E-05 1.9E-09 61.4 5.8 68 20-90 3-92 (148)
175 PRK07993 DNA polymerase III su 97.7 0.0013 2.7E-08 62.9 14.1 149 6-163 10-201 (334)
176 PRK08118 topology modulation p 97.6 3.6E-05 7.8E-10 65.8 3.2 36 21-56 3-38 (167)
177 KOG0743 AAA+-type ATPase [Post 97.6 0.0015 3.2E-08 62.8 13.9 153 5-170 212-413 (457)
178 PRK06090 DNA polymerase III su 97.6 0.0016 3.5E-08 61.3 13.9 149 6-166 11-201 (319)
179 KOG4579 Leucine-rich repeat (L 97.6 9.8E-06 2.1E-10 64.3 -0.8 90 294-385 51-142 (177)
180 KOG0733 Nuclear AAA ATPase (VC 97.6 0.00035 7.5E-09 69.1 9.3 83 2-88 194-294 (802)
181 KOG1969 DNA replication checkp 97.6 0.00011 2.4E-09 74.0 6.0 65 18-88 325-399 (877)
182 PF10443 RNA12: RNA12 protein; 97.6 0.0027 5.9E-08 61.1 14.9 166 3-176 1-288 (431)
183 PRK12422 chromosomal replicati 97.6 0.00019 4.2E-09 71.1 7.6 133 20-160 142-307 (445)
184 PRK07261 topology modulation p 97.6 0.00012 2.6E-09 62.9 5.3 65 21-87 2-68 (171)
185 KOG2982 Uncharacterized conser 97.6 5.2E-05 1.1E-09 68.2 3.0 84 316-400 69-157 (418)
186 KOG2227 Pre-initiation complex 97.6 0.0021 4.5E-08 61.9 13.7 164 1-168 153-374 (529)
187 KOG0741 AAA+-type ATPase [Post 97.6 0.0014 2.9E-08 63.9 12.6 72 18-94 537-616 (744)
188 PF02562 PhoH: PhoH-like prote 97.5 0.00017 3.6E-09 63.1 5.9 106 3-114 5-156 (205)
189 TIGR00602 rad24 checkpoint pro 97.5 0.00015 3.3E-09 74.3 6.5 43 1-43 87-134 (637)
190 KOG2543 Origin recognition com 97.5 0.00024 5.1E-09 66.4 7.0 86 2-93 10-132 (438)
191 PRK08181 transposase; Validate 97.5 7.8E-05 1.7E-09 68.5 3.9 66 12-88 101-179 (269)
192 PRK08116 hypothetical protein; 97.5 7.1E-05 1.5E-09 69.2 3.6 89 20-114 115-221 (268)
193 TIGR02640 gas_vesic_GvpN gas v 97.5 0.0011 2.3E-08 61.4 11.2 37 5-43 9-45 (262)
194 COG2812 DnaX DNA polymerase II 97.5 0.00087 1.9E-08 66.7 10.5 160 1-163 19-217 (515)
195 KOG2123 Uncharacterized conser 97.5 8.3E-06 1.8E-10 72.5 -3.2 103 317-430 18-123 (388)
196 PLN00020 ribulose bisphosphate 97.5 0.001 2.3E-08 62.7 10.3 133 18-161 147-333 (413)
197 PF07728 AAA_5: AAA domain (dy 97.5 0.00016 3.4E-09 59.9 4.5 61 22-88 2-77 (139)
198 PRK06964 DNA polymerase III su 97.4 0.0039 8.6E-08 59.4 14.2 81 73-164 129-223 (342)
199 COG2607 Predicted ATPase (AAA+ 97.4 0.0012 2.7E-08 57.8 9.7 79 18-99 84-165 (287)
200 CHL00195 ycf46 Ycf46; Provisio 97.4 0.00034 7.4E-09 69.9 7.3 133 19-160 259-429 (489)
201 PF04665 Pox_A32: Poxvirus A32 97.4 0.0004 8.6E-09 62.2 6.9 35 21-58 15-49 (241)
202 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00038 8.2E-09 75.3 7.8 43 1-43 568-619 (852)
203 KOG2739 Leucine-rich acidic nu 97.4 0.0001 2.2E-09 65.4 2.6 59 295-353 42-102 (260)
204 COG0470 HolB ATPase involved i 97.4 0.00055 1.2E-08 65.7 8.0 114 1-114 4-149 (325)
205 PF13207 AAA_17: AAA domain; P 97.4 0.00014 3.1E-09 58.6 3.2 23 21-43 1-23 (121)
206 PRK06696 uridine kinase; Valid 97.4 0.00025 5.5E-09 63.9 5.1 42 2-43 2-46 (223)
207 KOG2120 SCF ubiquitin ligase, 97.4 1.4E-05 2.9E-10 71.9 -3.1 146 295-450 209-370 (419)
208 COG0466 Lon ATP-dependent Lon 97.4 0.00043 9.3E-09 70.0 6.9 81 2-88 327-429 (782)
209 COG3267 ExeA Type II secretory 97.3 0.0081 1.8E-07 53.5 13.8 158 6-168 39-247 (269)
210 PF14532 Sigma54_activ_2: Sigm 97.3 6.9E-05 1.5E-09 61.9 0.9 105 1-114 1-110 (138)
211 KOG2035 Replication factor C, 97.3 0.0016 3.4E-08 58.3 9.2 206 2-210 17-282 (351)
212 KOG0734 AAA+-type ATPase conta 97.3 0.00037 8.1E-09 67.7 5.8 77 5-88 314-408 (752)
213 COG0593 DnaA ATPase involved i 97.3 0.0007 1.5E-08 65.3 7.6 115 19-138 113-261 (408)
214 PRK04132 replication factor C 97.3 0.0025 5.3E-08 67.6 12.3 136 25-164 570-729 (846)
215 TIGR02902 spore_lonB ATP-depen 97.3 0.0023 5E-08 65.3 11.9 42 1-42 68-109 (531)
216 PRK06921 hypothetical protein; 97.3 0.00038 8.2E-09 64.2 5.5 67 18-86 116-187 (266)
217 PRK09183 transposase/IS protei 97.3 0.00019 4.1E-09 66.0 3.5 65 20-87 103-175 (259)
218 PRK08699 DNA polymerase III su 97.3 0.0042 9.1E-08 59.1 12.6 113 19-132 21-183 (325)
219 COG1223 Predicted ATPase (AAA+ 97.3 0.00091 2E-08 59.2 7.3 141 10-160 136-319 (368)
220 PRK06526 transposase; Provisio 97.3 6.6E-05 1.4E-09 68.6 0.1 25 19-43 98-122 (254)
221 TIGR01243 CDC48 AAA family ATP 97.3 0.0014 3E-08 70.0 10.1 81 1-87 181-282 (733)
222 TIGR01243 CDC48 AAA family ATP 97.3 0.0015 3.3E-08 69.7 10.3 132 19-160 487-657 (733)
223 PRK07952 DNA replication prote 97.3 0.0008 1.7E-08 60.9 7.0 77 6-88 84-174 (244)
224 CHL00095 clpC Clp protease ATP 97.2 0.00071 1.5E-08 72.9 7.7 43 1-43 512-563 (821)
225 KOG0730 AAA+-type ATPase [Post 97.2 0.0033 7.2E-08 63.1 11.5 118 18-140 467-621 (693)
226 KOG2004 Mitochondrial ATP-depe 97.2 0.00055 1.2E-08 69.0 5.7 81 2-88 415-517 (906)
227 COG0542 clpA ATP-binding subun 97.2 0.00053 1.2E-08 71.0 5.6 85 1-88 494-605 (786)
228 TIGR03345 VI_ClpV1 type VI sec 97.2 0.00079 1.7E-08 72.4 7.2 43 1-43 569-620 (852)
229 PRK12377 putative replication 97.2 0.00055 1.2E-08 62.1 5.0 66 19-87 101-174 (248)
230 KOG2982 Uncharacterized conser 97.2 0.0006 1.3E-08 61.6 5.0 133 294-436 95-261 (418)
231 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00048 1E-08 65.2 4.7 43 1-43 54-102 (361)
232 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0023 5.1E-08 63.5 9.2 109 19-135 545-693 (802)
233 KOG2739 Leucine-rich acidic nu 97.1 0.00025 5.4E-09 63.0 2.3 108 316-433 41-152 (260)
234 cd01133 F1-ATPase_beta F1 ATP 97.1 0.00083 1.8E-08 61.4 5.7 49 20-71 70-120 (274)
235 PRK06547 hypothetical protein; 97.1 0.00079 1.7E-08 57.7 5.0 37 7-43 3-39 (172)
236 TIGR02639 ClpA ATP-dependent C 97.1 0.0018 4E-08 69.0 8.8 43 1-43 457-508 (731)
237 PF12775 AAA_7: P-loop contain 97.1 0.0017 3.7E-08 60.1 7.3 75 10-88 25-112 (272)
238 KOG2123 Uncharacterized conser 97.1 3.7E-05 7.9E-10 68.5 -3.6 98 340-450 17-124 (388)
239 KOG0727 26S proteasome regulat 97.1 0.0022 4.8E-08 56.5 7.3 69 17-88 187-260 (408)
240 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0021 4.6E-08 58.5 7.8 60 9-69 7-72 (235)
241 KOG0731 AAA+-type ATPase conta 97.0 0.0029 6.4E-08 65.3 9.3 148 5-163 321-521 (774)
242 KOG2120 SCF ubiquitin ligase, 97.0 2.8E-05 6.2E-10 69.9 -4.4 149 296-453 185-348 (419)
243 COG0542 clpA ATP-binding subun 97.0 0.0061 1.3E-07 63.5 11.4 132 1-134 173-346 (786)
244 PF13604 AAA_30: AAA domain; P 97.0 0.00072 1.6E-08 59.5 4.2 97 7-110 7-127 (196)
245 PRK13531 regulatory ATPase Rav 97.0 0.0011 2.4E-08 65.3 5.7 41 1-43 23-63 (498)
246 KOG0739 AAA+-type ATPase [Post 97.0 0.0051 1.1E-07 55.7 9.4 148 2-160 137-335 (439)
247 PRK12608 transcription termina 97.0 0.0019 4E-08 61.6 7.0 66 20-87 134-231 (380)
248 KOG0735 AAA+-type ATPase [Post 97.0 0.00084 1.8E-08 67.6 4.8 67 19-87 431-505 (952)
249 PRK10865 protein disaggregatio 97.0 0.0014 3E-08 70.7 6.8 43 1-43 571-622 (857)
250 PF01695 IstB_IS21: IstB-like 97.0 0.0015 3.2E-08 56.4 5.7 39 18-59 46-84 (178)
251 KOG0729 26S proteasome regulat 97.0 0.00093 2E-08 59.3 4.3 77 3-87 182-281 (435)
252 COG1618 Predicted nucleotide k 97.0 0.00088 1.9E-08 55.0 3.8 24 20-43 6-29 (179)
253 PRK06835 DNA replication prote 96.9 0.00049 1.1E-08 65.3 2.5 38 20-60 184-221 (329)
254 cd01393 recA_like RecA is a b 96.9 0.0035 7.6E-08 56.7 8.0 59 9-68 7-71 (226)
255 COG1484 DnaC DNA replication p 96.9 0.0019 4.1E-08 59.2 6.1 67 18-87 104-178 (254)
256 PRK11034 clpA ATP-dependent Cl 96.9 0.0021 4.6E-08 67.9 7.2 43 1-43 461-512 (758)
257 cd01120 RecA-like_NTPases RecA 96.9 0.0018 3.8E-08 55.0 5.6 38 21-61 1-38 (165)
258 PHA00729 NTP-binding motif con 96.9 0.0014 3.1E-08 58.0 5.0 35 9-43 7-41 (226)
259 TIGR00763 lon ATP-dependent pr 96.9 0.0036 7.7E-08 67.2 9.0 43 1-43 323-371 (775)
260 KOG0728 26S proteasome regulat 96.9 0.0056 1.2E-07 53.9 8.3 64 17-88 179-252 (404)
261 KOG1970 Checkpoint RAD17-RFC c 96.9 0.007 1.5E-07 59.5 9.8 48 4-56 88-142 (634)
262 KOG0736 Peroxisome assembly fa 96.9 0.0098 2.1E-07 60.8 10.9 60 20-88 706-776 (953)
263 KOG1514 Origin recognition com 96.8 0.014 3E-07 59.2 11.8 86 2-88 400-520 (767)
264 PRK09361 radB DNA repair and r 96.8 0.0037 8.1E-08 56.4 7.3 53 8-64 10-64 (225)
265 PRK08939 primosomal protein Dn 96.8 0.0019 4.1E-08 60.8 5.3 92 19-113 156-260 (306)
266 PRK10787 DNA-binding ATP-depen 96.8 0.0045 9.8E-08 65.9 8.4 42 2-43 326-373 (784)
267 PRK10733 hflB ATP-dependent me 96.8 0.0028 6.1E-08 66.3 6.8 63 20-88 186-256 (644)
268 COG1875 NYN ribonuclease and A 96.8 0.0025 5.4E-08 59.5 5.5 39 3-41 229-267 (436)
269 PF13238 AAA_18: AAA domain; P 96.8 0.0011 2.4E-08 53.8 3.1 21 22-42 1-21 (129)
270 PRK07132 DNA polymerase III su 96.7 0.041 8.8E-07 51.6 13.5 151 6-165 4-184 (299)
271 cd01135 V_A-ATPase_B V/A-type 96.7 0.0042 9.2E-08 56.7 6.7 52 20-71 70-123 (276)
272 PF07724 AAA_2: AAA domain (Cd 96.7 0.0042 9E-08 53.2 6.1 69 19-90 3-82 (171)
273 TIGR02858 spore_III_AA stage I 96.7 0.0078 1.7E-07 55.5 8.1 94 16-116 108-231 (270)
274 PF00485 PRK: Phosphoribulokin 96.6 0.0015 3.2E-08 57.5 3.2 23 21-43 1-23 (194)
275 PRK15455 PrkA family serine pr 96.6 0.0024 5.3E-08 63.9 4.9 43 1-43 79-127 (644)
276 PRK08233 hypothetical protein; 96.6 0.0019 4.1E-08 56.2 3.6 25 19-43 3-27 (182)
277 PF13671 AAA_33: AAA domain; P 96.6 0.0019 4.1E-08 53.6 3.3 23 21-43 1-23 (143)
278 cd02019 NK Nucleoside/nucleoti 96.6 0.0018 4E-08 46.0 2.8 23 21-43 1-23 (69)
279 PF00006 ATP-synt_ab: ATP synt 96.6 0.0058 1.3E-07 54.2 6.4 47 20-71 16-63 (215)
280 PRK09270 nucleoside triphospha 96.6 0.0035 7.7E-08 56.7 5.2 27 17-43 31-57 (229)
281 PTZ00301 uridine kinase; Provi 96.6 0.002 4.4E-08 57.0 3.4 25 19-43 3-27 (210)
282 PRK07667 uridine kinase; Provi 96.5 0.0038 8.2E-08 54.8 5.0 36 8-43 4-41 (193)
283 PRK05541 adenylylsulfate kinas 96.5 0.0028 6.1E-08 54.8 4.1 35 19-56 7-41 (176)
284 PRK06762 hypothetical protein; 96.5 0.0023 4.9E-08 54.8 3.4 25 19-43 2-26 (166)
285 PF03308 ArgK: ArgK protein; 96.5 0.0058 1.3E-07 54.8 5.9 45 17-62 27-71 (266)
286 PRK05342 clpX ATP-dependent pr 96.5 0.0049 1.1E-07 60.4 6.1 43 1-43 74-132 (412)
287 PRK05480 uridine/cytidine kina 96.5 0.0027 5.7E-08 56.7 3.8 27 17-43 4-30 (209)
288 TIGR02974 phageshock_pspF psp 96.5 0.005 1.1E-07 58.8 5.9 43 1-43 2-46 (329)
289 PF03215 Rad17: Rad17 cell cyc 96.5 0.0041 8.9E-08 62.8 5.3 48 4-56 25-77 (519)
290 TIGR02012 tigrfam_recA protein 96.4 0.0066 1.4E-07 57.2 6.1 52 9-63 42-96 (321)
291 COG1703 ArgK Putative periplas 96.4 0.0066 1.4E-07 55.3 5.8 46 17-63 49-94 (323)
292 PF01583 APS_kinase: Adenylyls 96.4 0.0038 8.3E-08 52.0 4.0 24 20-43 3-26 (156)
293 PRK03839 putative kinase; Prov 96.4 0.0028 6.1E-08 55.0 3.2 23 21-43 2-24 (180)
294 KOG0737 AAA+-type ATPase [Post 96.3 0.02 4.4E-07 53.7 8.6 65 18-88 126-198 (386)
295 PF00910 RNA_helicase: RNA hel 96.3 0.0024 5.3E-08 50.0 2.4 22 22-43 1-22 (107)
296 PF08423 Rad51: Rad51; InterP 96.3 0.013 2.8E-07 53.9 7.4 60 9-69 26-91 (256)
297 COG0572 Udk Uridine kinase [Nu 96.3 0.0039 8.4E-08 54.6 3.7 26 18-43 7-32 (218)
298 KOG0652 26S proteasome regulat 96.3 0.012 2.6E-07 52.3 6.6 82 2-86 175-274 (424)
299 TIGR02237 recomb_radB DNA repa 96.3 0.0055 1.2E-07 54.6 4.8 46 19-68 12-57 (209)
300 cd01121 Sms Sms (bacterial rad 96.3 0.0094 2E-07 57.7 6.7 51 8-61 69-121 (372)
301 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0064 1.4E-07 49.2 4.7 40 4-43 5-46 (133)
302 cd00983 recA RecA is a bacter 96.3 0.0084 1.8E-07 56.5 6.1 53 9-64 42-97 (325)
303 PRK09354 recA recombinase A; P 96.3 0.009 2E-07 56.8 6.3 53 9-64 47-102 (349)
304 PF13245 AAA_19: Part of AAA d 96.3 0.0054 1.2E-07 44.5 3.7 32 10-43 3-34 (76)
305 PRK08972 fliI flagellum-specif 96.3 0.01 2.2E-07 58.0 6.7 36 20-60 163-198 (444)
306 PRK10463 hydrogenase nickel in 96.3 0.011 2.5E-07 54.5 6.6 36 8-43 93-128 (290)
307 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0036 7.8E-08 54.7 3.3 26 18-43 2-27 (188)
308 TIGR01817 nifA Nif-specific re 96.3 0.015 3.3E-07 59.8 8.3 43 1-43 199-243 (534)
309 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.017 3.7E-07 48.4 7.0 24 20-43 3-26 (159)
310 TIGR00554 panK_bact pantothena 96.2 0.0051 1.1E-07 57.2 4.3 27 17-43 60-86 (290)
311 cd01131 PilT Pilus retraction 96.2 0.0091 2E-07 52.6 5.7 24 20-43 2-25 (198)
312 TIGR00235 udk uridine kinase. 96.2 0.0046 1E-07 55.0 3.8 26 18-43 5-30 (207)
313 cd02117 NifH_like This family 96.2 0.0053 1.1E-07 54.9 4.2 24 20-43 1-24 (212)
314 PF07693 KAP_NTPase: KAP famil 96.2 0.16 3.4E-06 48.7 14.7 41 3-43 1-44 (325)
315 KOG0738 AAA+-type ATPase [Post 96.2 0.012 2.6E-07 55.5 6.4 66 20-87 246-315 (491)
316 cd01394 radB RadB. The archaea 96.2 0.012 2.5E-07 52.9 6.4 53 8-63 6-60 (218)
317 PRK04040 adenylate kinase; Pro 96.2 0.0044 9.5E-08 54.0 3.4 24 20-43 3-26 (188)
318 PRK12597 F0F1 ATP synthase sub 96.2 0.0083 1.8E-07 59.3 5.6 50 20-71 144-194 (461)
319 PRK00625 shikimate kinase; Pro 96.2 0.0039 8.5E-08 53.4 3.0 23 21-43 2-24 (173)
320 PF03193 DUF258: Protein of un 96.2 0.0067 1.5E-07 50.8 4.3 36 5-43 24-59 (161)
321 TIGR01650 PD_CobS cobaltochela 96.2 0.018 3.9E-07 54.2 7.5 38 4-43 51-88 (327)
322 COG1066 Sms Predicted ATP-depe 96.2 0.013 2.7E-07 55.9 6.4 52 7-62 79-132 (456)
323 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.0038 8.2E-08 54.3 2.7 23 21-43 1-23 (183)
324 TIGR01287 nifH nitrogenase iro 96.1 0.0057 1.2E-07 57.2 4.1 24 20-43 1-24 (275)
325 cd01132 F1_ATPase_alpha F1 ATP 96.1 0.0098 2.1E-07 54.4 5.4 47 20-71 70-119 (274)
326 KOG0726 26S proteasome regulat 96.1 0.0061 1.3E-07 55.0 3.8 82 2-86 189-288 (440)
327 COG0465 HflB ATP-dependent Zn 96.1 0.027 5.8E-07 57.1 8.8 85 2-88 154-254 (596)
328 PF00158 Sigma54_activat: Sigm 96.1 0.0085 1.8E-07 51.1 4.5 43 1-43 2-46 (168)
329 PRK06217 hypothetical protein; 96.1 0.0051 1.1E-07 53.5 3.3 23 21-43 3-25 (183)
330 COG0194 Gmk Guanylate kinase [ 96.1 0.0081 1.8E-07 50.9 4.3 24 20-43 5-28 (191)
331 PRK04296 thymidine kinase; Pro 96.1 0.006 1.3E-07 53.4 3.7 24 20-43 3-26 (190)
332 COG1428 Deoxynucleoside kinase 96.1 0.0052 1.1E-07 53.2 3.1 25 19-43 4-28 (216)
333 TIGR00382 clpX endopeptidase C 96.1 0.015 3.3E-07 56.8 6.8 24 20-43 117-140 (413)
334 PRK06002 fliI flagellum-specif 96.1 0.012 2.7E-07 57.7 6.2 24 20-43 166-189 (450)
335 TIGR02322 phosphon_PhnN phosph 96.1 0.0054 1.2E-07 53.2 3.3 24 20-43 2-25 (179)
336 TIGR02238 recomb_DMC1 meiotic 96.0 0.024 5.3E-07 53.6 7.9 62 9-71 84-151 (313)
337 COG2884 FtsE Predicted ATPase 96.0 0.011 2.4E-07 50.2 4.8 24 20-43 29-52 (223)
338 cd03216 ABC_Carb_Monos_I This 96.0 0.012 2.6E-07 50.1 5.3 92 20-115 27-143 (163)
339 PF08433 KTI12: Chromatin asso 96.0 0.0057 1.2E-07 56.4 3.5 24 20-43 2-25 (270)
340 PRK00131 aroK shikimate kinase 96.0 0.0053 1.2E-07 52.9 3.1 24 20-43 5-28 (175)
341 cd03247 ABCC_cytochrome_bd The 96.0 0.016 3.4E-07 50.2 6.1 24 20-43 29-52 (178)
342 PRK13236 nitrogenase reductase 96.0 0.009 1.9E-07 56.3 4.8 28 16-43 3-30 (296)
343 COG0003 ArsA Predicted ATPase 96.0 0.0088 1.9E-07 56.4 4.7 48 19-69 2-49 (322)
344 COG1936 Predicted nucleotide k 96.0 0.0051 1.1E-07 51.3 2.7 20 21-40 2-21 (180)
345 TIGR03305 alt_F1F0_F1_bet alte 96.0 0.013 2.8E-07 57.6 6.0 66 20-87 139-243 (449)
346 TIGR00390 hslU ATP-dependent p 96.0 0.0091 2E-07 57.8 4.8 43 1-43 15-71 (441)
347 cd02024 NRK1 Nicotinamide ribo 96.0 0.0049 1.1E-07 53.4 2.7 23 21-43 1-23 (187)
348 COG0529 CysC Adenylylsulfate k 96.0 0.011 2.3E-07 49.6 4.5 33 11-43 15-47 (197)
349 PF00625 Guanylate_kin: Guanyl 96.0 0.0092 2E-07 51.9 4.5 36 19-57 2-37 (183)
350 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.022 4.9E-07 51.5 7.2 52 8-62 7-60 (229)
351 cd00227 CPT Chloramphenicol (C 96.0 0.0057 1.2E-07 52.8 3.1 24 20-43 3-26 (175)
352 COG0467 RAD55 RecA-superfamily 96.0 0.008 1.7E-07 55.6 4.3 42 18-62 22-63 (260)
353 PRK07276 DNA polymerase III su 96.0 0.16 3.4E-06 47.3 12.7 109 4-115 8-145 (290)
354 KOG0735 AAA+-type ATPase [Post 96.0 0.03 6.5E-07 56.9 8.4 129 21-162 703-872 (952)
355 cd01134 V_A-ATPase_A V/A-type 96.0 0.02 4.4E-07 54.0 6.9 47 20-71 158-205 (369)
356 PF07726 AAA_3: ATPase family 96.0 0.0044 9.4E-08 49.4 2.1 27 22-51 2-28 (131)
357 PF10236 DAP3: Mitochondrial r 96.0 0.099 2.1E-06 49.5 11.7 46 118-163 261-306 (309)
358 PRK08149 ATP synthase SpaL; Va 96.0 0.018 3.8E-07 56.4 6.7 24 20-43 152-175 (428)
359 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.0096 2.1E-07 49.5 4.3 90 20-115 27-128 (144)
360 PF00448 SRP54: SRP54-type pro 96.0 0.008 1.7E-07 52.7 4.0 25 19-43 1-25 (196)
361 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.0072 1.6E-07 53.9 3.7 99 19-117 29-157 (213)
362 COG1102 Cmk Cytidylate kinase 96.0 0.0057 1.2E-07 50.3 2.7 23 21-43 2-24 (179)
363 COG0563 Adk Adenylate kinase a 96.0 0.0058 1.3E-07 52.6 3.0 23 21-43 2-24 (178)
364 PRK09280 F0F1 ATP synthase sub 95.9 0.016 3.5E-07 57.1 6.3 65 20-86 145-248 (463)
365 cd02023 UMPK Uridine monophosp 95.9 0.0053 1.1E-07 54.2 2.7 23 21-43 1-23 (198)
366 PRK04328 hypothetical protein; 95.9 0.018 3.9E-07 52.8 6.3 52 9-63 11-64 (249)
367 PF00560 LRR_1: Leucine Rich R 95.9 0.0023 4.9E-08 33.9 0.2 16 368-383 2-17 (22)
368 PRK05439 pantothenate kinase; 95.9 0.012 2.6E-07 55.2 5.1 27 17-43 84-110 (311)
369 PRK08927 fliI flagellum-specif 95.9 0.022 4.7E-07 56.0 7.0 25 19-43 158-182 (442)
370 cd02021 GntK Gluconate kinase 95.9 0.0057 1.2E-07 51.3 2.7 23 21-43 1-23 (150)
371 PRK06936 type III secretion sy 95.9 0.02 4.4E-07 56.1 6.7 36 20-60 163-198 (439)
372 COG5238 RNA1 Ran GTPase-activa 95.9 0.011 2.4E-07 52.9 4.5 156 293-456 89-285 (388)
373 PRK12339 2-phosphoglycerate ki 95.9 0.008 1.7E-07 52.7 3.6 25 19-43 3-27 (197)
374 PRK13407 bchI magnesium chelat 95.9 0.011 2.3E-07 56.3 4.6 43 1-43 11-53 (334)
375 PRK13235 nifH nitrogenase redu 95.9 0.01 2.2E-07 55.4 4.4 24 20-43 2-25 (274)
376 PRK07594 type III secretion sy 95.8 0.019 4.1E-07 56.3 6.3 24 20-43 156-179 (433)
377 cd02025 PanK Pantothenate kina 95.8 0.0057 1.2E-07 54.8 2.6 23 21-43 1-23 (220)
378 cd02028 UMPK_like Uridine mono 95.8 0.0075 1.6E-07 52.2 3.2 23 21-43 1-23 (179)
379 PRK14722 flhF flagellar biosyn 95.8 0.02 4.4E-07 55.1 6.4 25 19-43 137-161 (374)
380 cd01124 KaiC KaiC is a circadi 95.8 0.0096 2.1E-07 51.9 3.8 38 21-61 1-38 (187)
381 KOG0744 AAA+-type ATPase [Post 95.8 0.0075 1.6E-07 55.4 3.1 25 19-43 177-201 (423)
382 cd00071 GMPK Guanosine monopho 95.8 0.0082 1.8E-07 49.4 3.2 23 21-43 1-23 (137)
383 PLN03187 meiotic recombination 95.8 0.031 6.6E-07 53.4 7.4 53 19-71 126-181 (344)
384 PF03205 MobB: Molybdopterin g 95.8 0.014 3E-07 48.1 4.4 39 20-60 1-39 (140)
385 PRK13947 shikimate kinase; Pro 95.8 0.008 1.7E-07 51.6 3.2 23 21-43 3-25 (171)
386 TIGR00073 hypB hydrogenase acc 95.8 0.016 3.5E-07 51.5 5.3 33 11-43 14-46 (207)
387 PRK05201 hslU ATP-dependent pr 95.8 0.013 2.8E-07 56.8 4.8 43 1-43 18-74 (443)
388 PLN03186 DNA repair protein RA 95.8 0.027 5.9E-07 53.8 7.0 51 19-70 123-177 (342)
389 PRK13232 nifH nitrogenase redu 95.8 0.011 2.3E-07 55.2 4.2 24 20-43 2-25 (273)
390 KOG3347 Predicted nucleotide k 95.8 0.0074 1.6E-07 48.9 2.6 44 19-70 7-50 (176)
391 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.018 3.9E-07 52.4 5.5 52 8-62 8-61 (237)
392 CHL00206 ycf2 Ycf2; Provisiona 95.8 0.036 7.8E-07 62.9 8.6 26 18-43 1629-1654(2281)
393 cd01129 PulE-GspE PulE/GspE Th 95.7 0.026 5.6E-07 52.1 6.5 36 7-43 69-104 (264)
394 PF03266 NTPase_1: NTPase; In 95.7 0.0076 1.6E-07 51.4 2.8 22 22-43 2-23 (168)
395 COG3640 CooC CO dehydrogenase 95.7 0.015 3.2E-07 51.1 4.6 23 21-43 2-24 (255)
396 PHA02774 E1; Provisional 95.7 0.026 5.7E-07 56.8 6.9 67 7-85 421-488 (613)
397 PRK14737 gmk guanylate kinase; 95.7 0.011 2.3E-07 51.5 3.8 26 18-43 3-28 (186)
398 cd02020 CMPK Cytidine monophos 95.7 0.0074 1.6E-07 50.2 2.7 23 21-43 1-23 (147)
399 COG5238 RNA1 Ran GTPase-activa 95.7 0.024 5.2E-07 50.9 5.8 138 291-435 115-283 (388)
400 cd01136 ATPase_flagellum-secre 95.7 0.033 7.1E-07 52.7 7.1 24 20-43 70-93 (326)
401 TIGR00416 sms DNA repair prote 95.7 0.026 5.6E-07 56.4 6.8 51 8-61 81-133 (454)
402 TIGR01041 ATP_syn_B_arch ATP s 95.7 0.024 5.1E-07 56.2 6.4 51 20-71 142-195 (458)
403 TIGR02239 recomb_RAD51 DNA rep 95.7 0.036 7.9E-07 52.5 7.4 58 9-67 84-147 (316)
404 PRK15429 formate hydrogenlyase 95.7 0.023 5E-07 60.3 6.8 43 1-43 379-423 (686)
405 PRK05917 DNA polymerase III su 95.7 0.064 1.4E-06 49.7 8.7 108 7-114 6-135 (290)
406 TIGR01039 atpD ATP synthase, F 95.7 0.022 4.7E-07 56.1 5.9 67 20-88 144-249 (461)
407 PRK00889 adenylylsulfate kinas 95.7 0.011 2.5E-07 50.9 3.7 25 19-43 4-28 (175)
408 TIGR03263 guanyl_kin guanylate 95.7 0.0092 2E-07 51.7 3.1 24 20-43 2-25 (180)
409 PRK13230 nitrogenase reductase 95.6 0.014 3E-07 54.7 4.5 24 20-43 2-25 (279)
410 COG0464 SpoVK ATPases of the A 95.6 0.016 3.4E-07 59.1 5.2 68 18-88 275-347 (494)
411 PRK13185 chlL protochlorophyll 95.6 0.015 3.3E-07 54.1 4.7 24 20-43 3-26 (270)
412 PRK13949 shikimate kinase; Pro 95.6 0.0096 2.1E-07 50.9 3.0 23 21-43 3-25 (169)
413 PRK14530 adenylate kinase; Pro 95.6 0.0093 2E-07 53.4 3.1 24 20-43 4-27 (215)
414 TIGR03496 FliI_clade1 flagella 95.6 0.028 6.2E-07 55.0 6.5 24 20-43 138-161 (411)
415 PRK05022 anaerobic nitric oxid 95.6 0.03 6.6E-07 57.1 7.1 43 1-43 190-234 (509)
416 COG0714 MoxR-like ATPases [Gen 95.6 0.021 4.6E-07 54.8 5.7 41 1-43 27-67 (329)
417 PF13086 AAA_11: AAA domain; P 95.6 0.019 4.1E-07 52.0 5.1 64 6-71 6-73 (236)
418 TIGR03498 FliI_clade3 flagella 95.6 0.024 5.2E-07 55.5 6.0 24 20-43 141-164 (418)
419 PRK05922 type III secretion sy 95.6 0.032 6.9E-07 54.7 6.7 24 20-43 158-181 (434)
420 cd04159 Arl10_like Arl10-like 95.6 0.024 5.1E-07 47.6 5.3 21 22-42 2-22 (159)
421 TIGR02030 BchI-ChlI magnesium 95.6 0.018 3.8E-07 55.0 4.8 43 1-43 7-49 (337)
422 PRK09099 type III secretion sy 95.5 0.029 6.4E-07 55.2 6.4 25 19-43 163-187 (441)
423 cd00464 SK Shikimate kinase (S 95.5 0.01 2.3E-07 49.8 3.0 22 22-43 2-23 (154)
424 PRK10751 molybdopterin-guanine 95.5 0.013 2.8E-07 49.9 3.4 26 18-43 5-30 (173)
425 TIGR01313 therm_gnt_kin carboh 95.5 0.0089 1.9E-07 50.9 2.5 22 22-43 1-22 (163)
426 COG1124 DppF ABC-type dipeptid 95.5 0.019 4.1E-07 50.9 4.5 24 20-43 34-57 (252)
427 PLN02200 adenylate kinase fami 95.5 0.013 2.9E-07 53.0 3.6 26 18-43 42-67 (234)
428 PRK14527 adenylate kinase; Pro 95.5 0.012 2.7E-07 51.5 3.3 26 18-43 5-30 (191)
429 KOG2228 Origin recognition com 95.5 0.12 2.6E-06 48.1 9.5 42 2-43 28-73 (408)
430 PRK03846 adenylylsulfate kinas 95.5 0.019 4E-07 50.7 4.4 27 17-43 22-48 (198)
431 PRK12678 transcription termina 95.5 0.032 7E-07 55.9 6.3 24 20-43 417-440 (672)
432 PF02374 ArsA_ATPase: Anion-tr 95.4 0.011 2.3E-07 55.9 2.9 24 20-43 2-25 (305)
433 cd02040 NifH NifH gene encodes 95.4 0.017 3.8E-07 53.7 4.4 24 20-43 2-25 (270)
434 PRK13233 nifH nitrogenase redu 95.4 0.018 3.9E-07 53.8 4.4 24 20-43 3-26 (275)
435 PRK06067 flagellar accessory p 95.4 0.027 5.9E-07 51.2 5.4 59 8-71 12-72 (234)
436 PRK05973 replicative DNA helic 95.4 0.021 4.5E-07 51.4 4.5 39 20-61 65-103 (237)
437 PRK10078 ribose 1,5-bisphospho 95.4 0.013 2.8E-07 51.2 3.1 24 20-43 3-26 (186)
438 COG4088 Predicted nucleotide k 95.4 0.012 2.5E-07 50.6 2.7 24 20-43 2-25 (261)
439 PRK06820 type III secretion sy 95.4 0.035 7.5E-07 54.7 6.4 24 20-43 164-187 (440)
440 COG3854 SpoIIIAA ncharacterize 95.4 0.066 1.4E-06 47.0 7.2 105 10-117 128-256 (308)
441 PRK13948 shikimate kinase; Pro 95.4 0.015 3.2E-07 50.3 3.4 26 18-43 9-34 (182)
442 CHL00059 atpA ATP synthase CF1 95.4 0.032 7E-07 55.2 6.1 64 20-88 142-245 (485)
443 PF13521 AAA_28: AAA domain; P 95.4 0.012 2.6E-07 50.1 2.8 21 22-42 2-22 (163)
444 TIGR00064 ftsY signal recognit 95.4 0.023 5E-07 52.6 4.9 26 18-43 71-96 (272)
445 PRK00300 gmk guanylate kinase; 95.4 0.013 2.8E-07 52.0 3.1 25 19-43 5-29 (205)
446 PRK05688 fliI flagellum-specif 95.4 0.046 9.9E-07 53.9 7.0 24 20-43 169-192 (451)
447 PRK04301 radA DNA repair and r 95.4 0.042 9.1E-07 52.4 6.7 52 19-71 102-157 (317)
448 TIGR02236 recomb_radA DNA repa 95.4 0.049 1.1E-06 51.8 7.2 52 19-71 95-150 (310)
449 PF06309 Torsin: Torsin; Inte 95.4 0.035 7.6E-07 44.1 5.0 38 6-43 37-77 (127)
450 PRK14738 gmk guanylate kinase; 95.3 0.015 3.3E-07 51.5 3.4 25 18-42 12-36 (206)
451 PRK13975 thymidylate kinase; P 95.3 0.015 3.3E-07 51.2 3.4 24 20-43 3-26 (196)
452 KOG1051 Chaperone HSP104 and r 95.3 0.048 1E-06 57.9 7.5 86 1-89 565-673 (898)
453 PRK13946 shikimate kinase; Pro 95.3 0.014 3E-07 50.9 3.0 25 19-43 10-34 (184)
454 PTZ00035 Rad51 protein; Provis 95.3 0.077 1.7E-06 50.8 8.3 58 9-67 106-169 (337)
455 PRK04196 V-type ATP synthase s 95.3 0.031 6.8E-07 55.5 5.8 51 20-71 144-197 (460)
456 KOG0736 Peroxisome assembly fa 95.3 0.19 4.1E-06 51.9 11.2 154 3-160 406-598 (953)
457 cd00820 PEPCK_HprK Phosphoenol 95.3 0.018 3.8E-07 44.6 3.2 21 20-40 16-36 (107)
458 cd03243 ABC_MutS_homologs The 95.3 0.033 7.1E-07 49.3 5.4 95 20-117 30-154 (202)
459 COG4608 AppF ABC-type oligopep 95.3 0.017 3.7E-07 52.1 3.6 24 20-43 40-63 (268)
460 PRK06851 hypothetical protein; 95.3 0.026 5.7E-07 54.1 5.0 47 17-65 212-258 (367)
461 PRK05057 aroK shikimate kinase 95.3 0.015 3.2E-07 49.9 3.1 24 20-43 5-28 (172)
462 TIGR01040 V-ATPase_V1_B V-type 95.3 0.035 7.5E-07 54.5 5.8 24 20-43 142-165 (466)
463 PRK15453 phosphoribulokinase; 95.3 0.017 3.7E-07 52.9 3.5 27 17-43 3-29 (290)
464 PRK13765 ATP-dependent proteas 95.3 0.03 6.4E-07 58.1 5.7 55 1-59 34-88 (637)
465 PTZ00185 ATPase alpha subunit; 95.3 0.049 1.1E-06 54.0 6.8 68 20-87 190-300 (574)
466 TIGR03878 thermo_KaiC_2 KaiC d 95.2 0.026 5.6E-07 52.0 4.7 39 19-60 36-74 (259)
467 PF08477 Miro: Miro-like prote 95.2 0.017 3.6E-07 46.1 3.1 22 22-43 2-23 (119)
468 PRK12338 hypothetical protein; 95.2 0.018 3.8E-07 54.0 3.6 25 19-43 4-28 (319)
469 TIGR00764 lon_rel lon-related 95.2 0.033 7.2E-07 57.8 5.9 53 1-57 21-73 (608)
470 smart00072 GuKc Guanylate kina 95.2 0.022 4.7E-07 49.6 3.9 25 19-43 2-26 (184)
471 TIGR03324 alt_F1F0_F1_al alter 95.2 0.042 9.2E-07 54.6 6.3 64 20-88 163-266 (497)
472 cd02027 APSK Adenosine 5'-phos 95.2 0.014 3.1E-07 48.8 2.6 23 21-43 1-23 (149)
473 PRK07721 fliI flagellum-specif 95.2 0.059 1.3E-06 53.3 7.2 26 18-43 157-182 (438)
474 PLN02165 adenylate isopentenyl 95.2 0.011 2.4E-07 55.6 2.1 29 15-43 39-67 (334)
475 cd02032 Bchl_like This family 95.2 0.025 5.4E-07 52.6 4.5 23 21-43 2-24 (267)
476 TIGR01026 fliI_yscN ATPase Fli 95.2 0.05 1.1E-06 53.8 6.7 24 20-43 164-187 (440)
477 TIGR03574 selen_PSTK L-seryl-t 95.2 0.013 2.9E-07 53.7 2.6 23 21-43 1-23 (249)
478 PRK14532 adenylate kinase; Pro 95.2 0.016 3.5E-07 50.6 3.0 22 22-43 3-24 (188)
479 PRK04182 cytidylate kinase; Pr 95.1 0.019 4E-07 49.7 3.3 23 21-43 2-24 (180)
480 cd01428 ADK Adenylate kinase ( 95.1 0.017 3.6E-07 50.7 3.0 22 22-43 2-23 (194)
481 PF13306 LRR_5: Leucine rich r 95.1 0.075 1.6E-06 42.9 6.7 79 317-398 11-90 (129)
482 cd01858 NGP_1 NGP-1. Autoanti 95.1 0.037 8.1E-07 46.7 5.0 41 3-43 83-126 (157)
483 TIGR02016 BchX chlorophyllide 95.1 0.025 5.5E-07 53.2 4.3 24 20-43 1-24 (296)
484 PLN02348 phosphoribulokinase 95.1 0.025 5.3E-07 54.4 4.2 27 17-43 47-73 (395)
485 cd03282 ABC_MSH4_euk MutS4 hom 95.1 0.054 1.2E-06 47.9 6.1 96 19-117 29-154 (204)
486 TIGR02173 cyt_kin_arch cytidyl 95.1 0.02 4.3E-07 49.1 3.3 23 21-43 2-24 (171)
487 COG2019 AdkA Archaeal adenylat 95.1 0.022 4.8E-07 47.2 3.2 25 19-43 4-28 (189)
488 PTZ00088 adenylate kinase 1; P 95.1 0.017 3.8E-07 51.9 3.0 23 21-43 8-30 (229)
489 cd04160 Arfrp1 Arfrp1 subfamil 95.1 0.074 1.6E-06 45.2 6.8 22 22-43 2-23 (167)
490 PRK13768 GTPase; Provisional 95.1 0.031 6.6E-07 51.4 4.6 24 20-43 3-26 (253)
491 CHL00081 chlI Mg-protoporyphyr 95.1 0.031 6.8E-07 53.4 4.8 43 1-43 20-62 (350)
492 COG0703 AroK Shikimate kinase 95.1 0.021 4.6E-07 48.1 3.2 24 20-43 3-26 (172)
493 PRK13234 nifH nitrogenase redu 95.1 0.03 6.4E-07 52.8 4.6 25 19-43 4-28 (295)
494 PRK10416 signal recognition pa 95.1 0.05 1.1E-06 51.6 6.1 26 18-43 113-138 (318)
495 PRK06761 hypothetical protein; 95.1 0.042 9.1E-07 50.8 5.5 24 20-43 4-27 (282)
496 PRK06851 hypothetical protein; 95.0 0.033 7.1E-07 53.5 4.9 49 16-66 27-75 (367)
497 TIGR01281 DPOR_bchL light-inde 95.0 0.028 6.1E-07 52.2 4.4 23 21-43 2-24 (268)
498 COG1116 TauB ABC-type nitrate/ 95.0 0.02 4.3E-07 51.1 3.1 24 20-43 30-53 (248)
499 PRK09435 membrane ATPase/prote 95.0 0.065 1.4E-06 50.9 6.8 35 9-43 44-80 (332)
500 TIGR02546 III_secr_ATP type II 95.0 0.069 1.5E-06 52.7 7.2 25 19-43 145-169 (422)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-67 Score=547.43 Aligned_cols=401 Identities=47% Similarity=0.797 Sum_probs=365.6
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh---------
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM--------- 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i--------- 71 (483)
||.+..++++++.|.+++..+++|+||||+||||||++++++...++.+|+.++||.+|++++...+..+|
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 79999999999999998889999999999999999999999994489999999999999999999888888
Q ss_pred ----------------hhcCCcEEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhhh-----------hccCChH
Q 038724 72 ----------------ILSTKKFLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEVC-----------VDCFTPQ 124 (483)
Q Consensus 72 ----------------~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~-----------l~~L~~~ 124 (483)
.++++|++||+||||+..+|+.+..++|...+||+|++|||++.|+ +++|+++
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~ 320 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPE 320 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCcc
Confidence 6889999999999999999999999999988999999999999998 8899999
Q ss_pred HHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-ccCCCC-hHHHHHh
Q 038724 125 ESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMAYKKTPEEWKDAIEILMRS-ALQFPG-INKVYYR 202 (483)
Q Consensus 125 ~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~~~-~~~~~~~ 202 (483)
+||++|.+.++.......+..++.+++++++|+|+|||+.++|+.++.+.+..+|+++.+.+.+. ....++ .+.+..+
T Consensus 321 eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~i 400 (889)
T KOG4658|consen 321 EAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPI 400 (889)
T ss_pred ccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHh
Confidence 99999999998876555566899999999999999999999999999999999999999988877 344433 3489999
Q ss_pred hhcccCCCCchhhhHHHhhhcCCCCCCccccccceehhhhhcCCccCCccchHHHHHHHHHHhhHHHHhhhhhhhh----
Q 038724 203 LKFSFDRLPSDQIRSCFLFCSPFPGDYRIHKRDLVVNYWIDEGIILDDEFDRNKAINRRYSINGDLIRASLLEEEE---- 278 (483)
Q Consensus 203 l~~s~~~L~~~~~~~~~~~~a~fp~~~~i~~~~l~i~~w~~eg~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~---- 278 (483)
+.+||+.||+ ++|.||+|||.||+++.|+++.+ +.+|+||||+.... ....++++++.++++|++++++..+.
T Consensus 401 LklSyd~L~~-~lK~CFLycalFPED~~I~~e~L-i~yWiaEGfi~~~~-~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 401 LKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKL-IEYWIAEGFIDPLD-GGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred hhccHhhhhH-HHHHHHHhhccCCcccccchHHH-HHHHHhccCcCccc-cccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 9999999997 99999999999999999999999 99999999998844 56788999999999999999999864
Q ss_pred hhhhhhcccCccccc----------------------------cccceEEEEccccccccccCCCCCCcccEEEecCCc-
Q 038724 279 DILEKLRDVVPSDAL----------------------------KWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNY- 329 (483)
Q Consensus 279 ~~~~~l~~~~~~~~~----------------------------~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~- 329 (483)
...|+|||++++++. .+...+++++.+|.+..++....+++|++|-+.+|.
T Consensus 478 ~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD 557 (889)
T ss_pred eeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch
Confidence 378899998887655 345677888888888888877888899999999996
Q ss_pred -cccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCC
Q 038724 330 -LQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 330 -~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
+..++..+|..++.|++|||++|.-.+.+|..++.|-+|+||+++++.+..+|.++++|++|.+|++..+.....
T Consensus 558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 558 WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccc
Confidence 788888889999999999999998899999999999999999999999999999999999999999999876544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.3e-47 Score=418.23 Aligned_cols=375 Identities=19% Similarity=0.285 Sum_probs=277.3
Q ss_pred CCChhHHHHHHHHHh--cCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe---CCCc-----------Cc
Q 038724 1 IENPKQFYQVWRFLV--KKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVV---SKEL-----------KL 64 (483)
Q Consensus 1 vgr~~~~~~l~~~l~--~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~---~~~~-----------~~ 64 (483)
|||++.++++.+++. .+++++|+|+||||+||||||+++|++. ..+|++.+|+.. +... ..
T Consensus 187 vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~ 263 (1153)
T PLN03210 187 VGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDDYNM 263 (1153)
T ss_pred cchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccccch
Confidence 799999999999885 3578999999999999999999999977 678999888742 1110 00
Q ss_pred -c----chhHHh----------------hhcCCcEEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhhh------
Q 038724 65 -E----TSQDDM----------------ILSTKKFLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEVC------ 117 (483)
Q Consensus 65 -~----~~~~~i----------------~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~------ 117 (483)
. +++.++ .++++|+||||||||+..+++.+.....+.++||+||||||++.++
T Consensus 264 ~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~ 343 (1153)
T PLN03210 264 KLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID 343 (1153)
T ss_pred hHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC
Confidence 0 011111 5678999999999999999998877666778899999999999876
Q ss_pred ----hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccCC
Q 038724 118 ----VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMAYKKTPEEWKDAIEILMRSALQF 193 (483)
Q Consensus 118 ----l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~ 193 (483)
++.+++++|+++|..+++... .+..+..+.+++|+++|+|+|||++++|+.|+. ++.++|+.+++++.....
T Consensus 344 ~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~~~-- 419 (1153)
T PLN03210 344 HIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNGLD-- 419 (1153)
T ss_pred eEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhCcc--
Confidence 788999999999999998765 334567788999999999999999999999998 578999999998876432
Q ss_pred CChHHHHHhhhcccCCCCchhhhHHHhhhcCCCCCCccccccceehhhhhcCCccCCccchHHHHHHHHHHhhHHHHhhh
Q 038724 194 PGINKVYYRLKFSFDRLPSDQIRSCFLFCSPFPGDYRIHKRDLVVNYWIDEGIILDDEFDRNKAINRRYSINGDLIRASL 273 (483)
Q Consensus 194 ~~~~~~~~~l~~s~~~L~~~~~~~~~~~~a~fp~~~~i~~~~l~i~~w~~eg~~~~~~~~~~~~~~~~~~~l~~L~~~sl 273 (483)
..+..++++||+.|+++..|.||+++|+|+.+..+. . +..|++.+...... .++.|+++++
T Consensus 420 ---~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~-v~~~l~~~~~~~~~------------~l~~L~~ksL 480 (1153)
T PLN03210 420 ---GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---D-IKLLLANSDLDVNI------------GLKNLVDKSL 480 (1153)
T ss_pred ---HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---H-HHHHHHhcCCCchh------------ChHHHHhcCC
Confidence 279999999999998735899999999998876542 3 45555543321110 1333344433
Q ss_pred hhhhhhhhhhhcccCccccc--------------------------------------------------------cc--
Q 038724 274 LEEEEDILEKLRDVVPSDAL--------------------------------------------------------KW-- 295 (483)
Q Consensus 274 l~~~~~~~~~l~~~~~~~~~--------------------------------------------------------~~-- 295 (483)
+.... ..+.||++++++.+ .+
T Consensus 481 i~~~~-~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~ 559 (1153)
T PLN03210 481 IHVRE-DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRN 559 (1153)
T ss_pred EEEcC-CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcc
Confidence 33211 11222222221111 11
Q ss_pred -----------------------------cceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccE
Q 038724 296 -----------------------------LGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346 (483)
Q Consensus 296 -----------------------------~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 346 (483)
.+++.|.+.++.++.+|....+.+|+.|++++|.+..++.+ +..+++|++
T Consensus 560 L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~ 638 (1153)
T PLN03210 560 LLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRN 638 (1153)
T ss_pred ccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCE
Confidence 23555555555566665555567888888888888777665 577888888
Q ss_pred EEccCCccCccCCcccccCcCCCEEeccCCC-CCccCccccCCcCCCEEecCCCCCcCC
Q 038724 347 LNLSYNRFLTKLPSGISKLVSLQHLDISFTS-TLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 347 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
|+|++|..+..+| .++.+++|++|++++|. +..+|..++++++|+.|++++|.....
T Consensus 639 L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 639 IDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred EECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc
Confidence 8888877677777 47888888899888876 888888888888899999988765443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2e-42 Score=326.65 Aligned_cols=246 Identities=33% Similarity=0.627 Sum_probs=198.3
Q ss_pred ChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh---------
Q 038724 3 NPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM--------- 71 (483)
Q Consensus 3 r~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i--------- 71 (483)
||.++++|.++|.+ .+.++|+|+||||+||||||.+++++. ..+.+|++++|+.+++..+...+...+
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 89999999999998 788999999999999999999999985 358899999999999887766666655
Q ss_pred -----------------hhcCCcEEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhhh-----------hccCCh
Q 038724 72 -----------------ILSTKKFLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEVC-----------VDCFTP 123 (483)
Q Consensus 72 -----------------~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~-----------l~~L~~ 123 (483)
.++++++|+||||||+...|+.+...++....|++||||||+..++ +++|++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5678899999999999999988888887777799999999998775 889999
Q ss_pred HHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCC-ChHHHHHh
Q 038724 124 QESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMAYKKTPEEWKDAIEILMRSALQFP-GINKVYYR 202 (483)
Q Consensus 124 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~-~~~~~~~~ 202 (483)
++|+++|.+.++...........+.+++|+++|+|+|||++++|++++.+.+..+|+.+++.+........ ....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998765433446667889999999999999999999999665567899999988887764433 34589999
Q ss_pred hhcccCCCCchhhhHHHhhhcCCCCCCccccccceehhhhhcCCccCCc
Q 038724 203 LKFSFDRLPSDQIRSCFLFCSPFPGDYRIHKRDLVVNYWIDEGIILDDE 251 (483)
Q Consensus 203 l~~s~~~L~~~~~~~~~~~~a~fp~~~~i~~~~l~i~~w~~eg~~~~~~ 251 (483)
+..||+.||+ +.|.||.+||+||+++.|+.+.+ +.+|+++|++..+.
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~l-i~lW~~e~~i~~~~ 286 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERL-IRLWVAEGFISSKH 286 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHH-HHHHTT-HHTC---
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHH-HHHHHHCCCCcccC
Confidence 9999999999 89999999999999999999999 99999999987653
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=4.2e-17 Score=132.36 Aligned_cols=143 Identities=24% Similarity=0.370 Sum_probs=85.7
Q ss_pred ccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 295 WLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
++.+++|.+++|+++.+++. ..+++|+.|++++|+++++|.+ ++.++.|+.|+++-|+ +..+|.+|+.++.|+.||+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnr-l~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhh-hhcCccccCCCchhhhhhc
Confidence 34556666666666666554 5566666666666666666655 5666666666666664 5566666666666666666
Q ss_pred cCCCC--CccCccccCCcCCCEEecCCCCCcCCC-CCCCCc----------cchhhHhhhccccccccceeeccCcccc
Q 038724 374 SFTST--LELPEELKALEKLKYLDMDDHQQVMEE-GNCQSD----------DAESLLKEMLCLEQLNIIRLTSCSLCSL 439 (483)
Q Consensus 374 ~~~~i--~~lp~~~~~l~~L~~L~l~~n~~~~~p-~~~~l~----------~~~~~~~~l~~l~~L~~L~l~~~~l~~l 439 (483)
+.|++ ..+|..|..++.|+.|+++.|.+..+| +++.++ .....|++++.|++|+.|++.+|.+..+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence 66653 335555555556666666665544332 222221 1345666777777777777777776544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.54 E-value=1.5e-14 Score=159.26 Aligned_cols=163 Identities=24% Similarity=0.261 Sum_probs=95.1
Q ss_pred cccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 294 KWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
.+.+|++|++++|.+++..+...+++|++|+|++|.+....+..++.+++|++|++++|.+.+.+|..++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 56667777777776665544455666677777766666544444666666777777666655666666666666666666
Q ss_pred cCCCC-CccCccccCCcCCCEEecCCCCCcCC-CC-CCCCc-----------cchhhHhhhccccccccceeeccCcc--
Q 038724 374 SFTST-LELPEELKALEKLKYLDMDDHQQVME-EG-NCQSD-----------DAESLLKEMLCLEQLNIIRLTSCSLC-- 437 (483)
Q Consensus 374 ~~~~i-~~lp~~~~~l~~L~~L~l~~n~~~~~-p~-~~~l~-----------~~~~~~~~l~~l~~L~~L~l~~~~l~-- 437 (483)
++|.+ ..+|..++++++|++|++++|.+... |. ++.+. .....|..+..+++|+.|++++|.+.
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 66663 34566666666666666666665543 43 22221 11234445555556666666555542
Q ss_pred ---ccCCCCCcccccceeeeee
Q 038724 438 ---SLCGLPTVQCLTSRRLNLE 456 (483)
Q Consensus 438 ---~l~~l~~l~~l~l~~~~~~ 456 (483)
.+..+++|+.|++++|++.
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CchhHhhccCcCEEECcCCeec
Confidence 2344555555555555443
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=8.5e-16 Score=124.80 Aligned_cols=115 Identities=28% Similarity=0.395 Sum_probs=64.0
Q ss_pred ccccccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCc-cCCcccccCcCC
Q 038724 291 DALKWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLT-KLPSGISKLVSL 368 (483)
Q Consensus 291 ~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L 368 (483)
.+..+.+++.|++.+|+++.+|.. +.++.|+.|+++.|.+..+|.+ |+.++.|++|||++|++.. .+|..|..++.|
T Consensus 51 nia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 51 NIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred cHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccccccccCCcchhHHHHH
Confidence 334555666666666666666554 4566666666666666555555 5666666666666654332 345555555555
Q ss_pred CEEeccCCCCCccCccccCCcCCCEEecCCCCCcCCCC
Q 038724 369 QHLDISFTSTLELPEELKALEKLKYLDMDDHQQVMEEG 406 (483)
Q Consensus 369 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~ 406 (483)
+.|.+++|...-+|+.++++++|+.|.++.|.+...|.
T Consensus 130 ralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 130 RALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred HHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence 55555555555555555555555555555555444443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.49 E-value=2.2e-15 Score=145.33 Aligned_cols=176 Identities=23% Similarity=0.319 Sum_probs=126.9
Q ss_pred CccccccccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCc
Q 038724 288 VPSDALKWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLV 366 (483)
Q Consensus 288 ~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 366 (483)
+|+.+-.+..|+.+++++|+++..|.. ...+++-+|+||+|++..+|.+.|-++..|-+||||+|+ +..+|+.+..|.
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLS 173 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHh
Confidence 344444678899999999999998865 567899999999999999999989999999999999996 888999999999
Q ss_pred CCCEEeccCCCCCccC-ccccCCcCCCEEecCCCCCcCC--CC-CCCCc----------cchhhHhhhccccccccceee
Q 038724 367 SLQHLDISFTSTLELP-EELKALEKLKYLDMDDHQQVME--EG-NCQSD----------DAESLLKEMLCLEQLNIIRLT 432 (483)
Q Consensus 367 ~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~n~~~~~--p~-~~~l~----------~~~~~~~~l~~l~~L~~L~l~ 432 (483)
+|++|+|++|++...- ..+..+++|+.|.+++.+.+-. |. +..+. .....|+.+-.+++|+.|++|
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccC
Confidence 9999999988743211 1123456666777776553322 33 32221 344566677778888888888
Q ss_pred ccCcccc----CCCCCcccccceeeeeeeeeccccc
Q 038724 433 SCSLCSL----CGLPTVQCLTSRRLNLEVEDWHKCT 464 (483)
Q Consensus 433 ~~~l~~l----~~l~~l~~l~l~~~~~~~~~~~~~~ 464 (483)
+|.++.+ ....++.+|++++|++...+-.-|.
T Consensus 254 ~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcK 289 (1255)
T KOG0444|consen 254 GNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCK 289 (1255)
T ss_pred cCceeeeeccHHHHhhhhhhccccchhccchHHHhh
Confidence 8877544 3345677777777777665544444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.48 E-value=1.5e-14 Score=138.70 Aligned_cols=195 Identities=23% Similarity=0.255 Sum_probs=141.1
Q ss_pred CccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccC
Q 038724 288 VPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKL 365 (483)
Q Consensus 288 ~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 365 (483)
+|.......++..|+|.+|.|+.+... ..++.|++||||.|.++.++...|..-.++++|+|++|++...--..|..+
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l 196 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL 196 (873)
T ss_pred cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccccc
Confidence 334444455677788888877766543 467788888888888888877777776778888888887665555677788
Q ss_pred cCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCC--CCCC---c--------cchhhHhhhcccccccccee
Q 038724 366 VSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEG--NCQS---D--------DAESLLKEMLCLEQLNIIRL 431 (483)
Q Consensus 366 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~--~~~l---~--------~~~~~~~~l~~l~~L~~L~l 431 (483)
.+|.+|.|+.|.++.+|.. |.+|++|+.|+|..|++...-. +..+ + +..-.-..|-.|.++++|++
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 8888888888888888875 5668888888888887654311 2222 1 11111224567889999999
Q ss_pred eccCccc-----cCCCCCcccccceeeeee---eeecccccCccceeecCCcccccccC
Q 038724 432 TSCSLCS-----LCGLPTVQCLTSRRLNLE---VEDWHKCTGEVHKVLQSGGSEIFTPL 482 (483)
Q Consensus 432 ~~~~l~~-----l~~l~~l~~l~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (483)
..|++.. +.+|..|+.|++++|.|+ ...|++|+.+....|+.....-+++.
T Consensus 277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence 9998754 577899999999988765 67999999999988887776666654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.48 E-value=6.6e-15 Score=141.00 Aligned_cols=155 Identities=25% Similarity=0.250 Sum_probs=80.5
Q ss_pred cccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 294 KWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
.+.++..|+|..|++..+... ..+..|+.|+||+|.++.+..+.++..+.|++|+|++|++..--|+++..|..|++|
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 344445555555555444332 244555555555555555555445555555555555554333333445555555555
Q ss_pred eccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCCCCCc
Q 038724 372 DISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLPTV 445 (483)
Q Consensus 372 ~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~~l 445 (483)
+|++|.+..+-++ |..+++|+.|||++|.+.-. .......+..|++|++|++.||++.+ +++++.|
T Consensus 347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~--------IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC--------IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE--------EecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 5555555555443 45555555555555553321 11122335556677777777776633 4566666
Q ss_pred ccccceeeeee
Q 038724 446 QCLTSRRLNLE 456 (483)
Q Consensus 446 ~~l~l~~~~~~ 456 (483)
+.|++.+|-|-
T Consensus 419 E~LdL~~Naia 429 (873)
T KOG4194|consen 419 EHLDLGDNAIA 429 (873)
T ss_pred ceecCCCCcce
Confidence 66666665443
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.47 E-value=8e-14 Score=153.64 Aligned_cols=174 Identities=22% Similarity=0.219 Sum_probs=99.9
Q ss_pred hcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcc
Q 038724 284 LRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSG 361 (483)
Q Consensus 284 l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 361 (483)
+....+..+..+++|+.|++++|.+....+. ..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.+|..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 3334444455556666666666665543322 45566666666666665544444666666666666666655666666
Q ss_pred cccCcCCCEEeccCCCC-CccCccccCCcCCCEEecCCCCCcCC-CC-CCCCc-----------cchhhHhhhccccccc
Q 038724 362 ISKLVSLQHLDISFTST-LELPEELKALEKLKYLDMDDHQQVME-EG-NCQSD-----------DAESLLKEMLCLEQLN 427 (483)
Q Consensus 362 ~~~l~~L~~L~l~~~~i-~~lp~~~~~l~~L~~L~l~~n~~~~~-p~-~~~l~-----------~~~~~~~~l~~l~~L~ 427 (483)
++.+++|++|++++|.+ ..+|..+.++++|++|++++|.+... |. +..++ .....+..+..+++|+
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence 66666666666666663 34566666666666666666665544 33 22221 1223344556666666
Q ss_pred cceeeccCcc-----ccCCCCCcccccceeeeeee
Q 038724 428 IIRLTSCSLC-----SLCGLPTVQCLTSRRLNLEV 457 (483)
Q Consensus 428 ~L~l~~~~l~-----~l~~l~~l~~l~l~~~~~~~ 457 (483)
.|++++|.+. .+..+++|+.|+++.|++..
T Consensus 336 ~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred EEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 6666666553 24455666666666666553
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.40 E-value=3.2e-14 Score=137.39 Aligned_cols=165 Identities=21% Similarity=0.271 Sum_probs=135.4
Q ss_pred ccccccceEEEEcccccccc--ccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcc-cccCc
Q 038724 291 DALKWLGLRRMSLMNNQIKT--LLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSG-ISKLV 366 (483)
Q Consensus 291 ~~~~~~~l~~l~l~~~~~~~--~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~ 366 (483)
....++.|+.+.+..|+++. +|+. ..++.|..||||.|++.+.|.. +...+++-+|+||+|+ +..+|.. +-+|+
T Consensus 73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N~-IetIPn~lfinLt 150 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYNN-IETIPNSLFINLT 150 (1255)
T ss_pred hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccCc-cccCCchHHHhhH
Confidence 34467889999999998864 4433 5789999999999999999887 8888999999999996 7777755 55899
Q ss_pred CCCEEeccCCCCCccCccccCCcCCCEEecCCCCCc-----CCCCCCCCc---------cchhhHhhhccccccccceee
Q 038724 367 SLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQV-----MEEGNCQSD---------DAESLLKEMLCLEQLNIIRLT 432 (483)
Q Consensus 367 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~-----~~p~~~~l~---------~~~~~~~~l~~l~~L~~L~l~ 432 (483)
.|-+|||++|.+..+|+.+..|..|++|.|++|.+. ..|+...+. ....+|..+..|.+|+.+++|
T Consensus 151 DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 999999999999999999999999999999999753 226543332 345567778888899999999
Q ss_pred ccCc----cccCCCCCcccccceeeeeee
Q 038724 433 SCSL----CSLCGLPTVQCLTSRRLNLEV 457 (483)
Q Consensus 433 ~~~l----~~l~~l~~l~~l~l~~~~~~~ 457 (483)
.|++ .++..+++|+.|+++.|.++.
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCceee
Confidence 9987 457888999999999888764
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=5.8e-13 Score=113.08 Aligned_cols=134 Identities=28% Similarity=0.406 Sum_probs=44.0
Q ss_pred cccccccccCCCCCCcccEEEecCCccccccchhhh-cCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccC
Q 038724 304 MNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQ-FMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELP 382 (483)
Q Consensus 304 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp 382 (483)
..+.|+..+....+.+++.|+|++|.++.+.. +. .+.+|+.|++++|. +..++ .+..+++|++|++++|.|++++
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-C
T ss_pred cccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCCccc
Confidence 34445555544455567777788777776643 33 46677788888875 45554 5777777888888888877776
Q ss_pred ccc-cCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc--------cCCCCCcccccce
Q 038724 383 EEL-KALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS--------LCGLPTVQCLTSR 451 (483)
Q Consensus 383 ~~~-~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~--------l~~l~~l~~l~l~ 451 (483)
..+ ..+++|+.|++++|++... .....+..+++|+.|++.+|+++. +..+|+|+.|+-.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l----------~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDL----------NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SC----------CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cchHHhCCcCCEEECcCCcCCCh----------HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 554 3577888888888776532 233556677788888888887643 3456777777754
No 13
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.23 E-value=9.4e-12 Score=113.65 Aligned_cols=160 Identities=21% Similarity=0.256 Sum_probs=91.4
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc------------------
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL------------------ 62 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~------------------ 62 (483)
+||++++++|.+++..+..+.+.|+|+.|+|||+|++++.+.. ... .+ .++|+...+..
T Consensus 2 ~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~~~-~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 2 FGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-KEK-GY-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp -S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-hhc-CC-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 6999999999999998767899999999999999999999876 211 11 12222211111
Q ss_pred --------------------------CccchhHHhhhcCCcEEEEEcCCCCcc-ccc---c----c---cCCCCCCCCCC
Q 038724 63 --------------------------KLETSQDDMILSTKKFLLLLDDLWETI-DLS---K----I---GVPLPSQKIVS 105 (483)
Q Consensus 63 --------------------------~~~~~~~~i~l~~~~~LlvlDdv~~~~-~~~---~----l---~~~~~~~~~gs 105 (483)
....+...+...+++++||+||+.... ... . + ........+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 011122222444566999999997665 111 1 1 11222233344
Q ss_pred EEEEecCChhhh-----------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHH
Q 038724 106 KVVFTTHSEEVC-----------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTI 165 (483)
Q Consensus 106 ~ilvTtR~~~~~-----------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 165 (483)
.|+++|...... +++|+.+++++++........ .. +...+..++|...+||+|..|..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~-~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELI-KL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhh-cc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 454444422111 899999999999998764331 11 23456689999999999988764
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=2.1e-11 Score=103.64 Aligned_cols=129 Identities=28% Similarity=0.376 Sum_probs=56.5
Q ss_pred ccceEEEEccccccccccCCC-CCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCccc-ccCcCCCEEe
Q 038724 295 WLGLRRMSLMNNQIKTLLNTP-SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGI-SKLVSLQHLD 372 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~ 372 (483)
..+++.|++.+|.|+.+.... .+.+|+.|++++|.++.+.. +..++.|++|++++|+ +..+++.+ ..+++|+.|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCC-CCccccchHHhCCcCCEEE
Confidence 446789999999999887765 58899999999999998875 7889999999999997 55665555 3689999999
Q ss_pred ccCCCCCccCc--cccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeecc
Q 038724 373 ISFTSTLELPE--ELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSC 434 (483)
Q Consensus 373 l~~~~i~~lp~--~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~ 434 (483)
+++|.|.++.. .+..+++|+.|++.+|.+...+. ....-+..+|+|+.|+-...
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~--------YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN--------YRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT--------HHHHHHHH-TT-SEETTEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh--------HHHHHHHHcChhheeCCEEc
Confidence 99999877643 37789999999999999664322 23334677889998885543
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.19 E-value=4.6e-13 Score=123.05 Aligned_cols=178 Identities=23% Similarity=0.291 Sum_probs=108.8
Q ss_pred cccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 294 KWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
...++..++.+.|.+..+++. ..+..+..++..+|+++..|++ +..+.+|..+++.+|+ ...+|+..-.++.|+.||
T Consensus 112 s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLD 189 (565)
T ss_pred hhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcc
Confidence 344555566666666655543 4555666666666666666655 3445556666666664 444444444466666666
Q ss_pred ccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCc----------cchhhHhhh-ccccccccceeeccCccc---
Q 038724 373 ISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSD----------DAESLLKEM-LCLEQLNIIRLTSCSLCS--- 438 (483)
Q Consensus 373 l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~----------~~~~~~~~l-~~l~~L~~L~l~~~~l~~--- 438 (483)
...|-++.+|+.++.+.+|..|++..|++...|.+..-. .....|.+. ++|++|-.|++..|++.+
T Consensus 190 ~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred cchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch
Confidence 666666666666666666666666666665555532211 123344444 488999999999998855
Q ss_pred -cCCCCCcccccceeeeeeeeecccccCccc-eeecCCc
Q 038724 439 -LCGLPTVQCLTSRRLNLEVEDWHKCTGEVH-KVLQSGG 475 (483)
Q Consensus 439 -l~~l~~l~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~ 475 (483)
++.+.+|..|++++|.++..+. -.|.+| +++.+.+
T Consensus 270 e~clLrsL~rLDlSNN~is~Lp~--sLgnlhL~~L~leG 306 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDISSLPY--SLGNLHLKFLALEG 306 (565)
T ss_pred HHHHhhhhhhhcccCCccccCCc--ccccceeeehhhcC
Confidence 5667888899999888875544 345555 5555544
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=1.7e-10 Score=126.58 Aligned_cols=202 Identities=16% Similarity=0.192 Sum_probs=124.9
Q ss_pred CChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-CccchhHHh---------
Q 038724 2 ENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL-KLETSQDDM--------- 71 (483)
Q Consensus 2 gr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i--------- 71 (483)
-|++.++.+.+. ...+++.|+|++|.||||++.+..++. . .+.|+++.... +...+...+
T Consensus 18 ~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~-----~--~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~ 87 (903)
T PRK04841 18 VRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK-----N--NLGWYSLDESDNQPERFASYLIAALQQATN 87 (903)
T ss_pred cchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC-----C--CeEEEecCcccCCHHHHHHHHHHHHHHhcC
Confidence 355555544321 356899999999999999999987643 2 48899875332 211111111
Q ss_pred ---------------------------hh--cCCcEEEEEcCCCCccc--cc-cccCCCCCCCCCCEEEEecCChhhh--
Q 038724 72 ---------------------------IL--STKKFLLLLDDLWETID--LS-KIGVPLPSQKIVSKVVFTTHSEEVC-- 117 (483)
Q Consensus 72 ---------------------------~l--~~~~~LlvlDdv~~~~~--~~-~l~~~~~~~~~gs~ilvTtR~~~~~-- 117 (483)
.+ .+++++|||||+...+. .. .+...+.....+.+++||||.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~ 167 (903)
T PRK04841 88 GHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGI 167 (903)
T ss_pred cccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCch
Confidence 11 27899999999976532 12 2222222233457888999984211
Q ss_pred -----------hc----cCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhcCCCCHHHHHHH
Q 038724 118 -----------VD----CFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMAYKKTPEEWKDA 182 (483)
Q Consensus 118 -----------l~----~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~~w~~~ 182 (483)
++ +|+.+|+.++|....+.. -..+.++.+.+.|+|+|+++..++..++..... ....
T Consensus 168 ~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~--~~~~ 239 (903)
T PRK04841 168 ANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSARQNNSS--LHDS 239 (903)
T ss_pred HhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc--hhhh
Confidence 33 899999999998765432 134568899999999999999998777542110 0011
Q ss_pred HHHHHhcccCCCChHHHHHhhhc-ccCCCCchhhhHHHhhhcCCCC
Q 038724 183 IEILMRSALQFPGINKVYYRLKF-SFDRLPSDQIRSCFLFCSPFPG 227 (483)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~l~~-s~~~L~~~~~~~~~~~~a~fp~ 227 (483)
...+. ..+ ...+...+.- -++.||+ ..+..+...|+++.
T Consensus 240 ~~~~~----~~~-~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~~ 279 (903)
T PRK04841 240 ARRLA----GIN-ASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLRS 279 (903)
T ss_pred hHhhc----CCC-chhHHHHHHHHHHhcCCH-HHHHHHHHhccccc
Confidence 11110 000 1134443333 3679999 89999999999873
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.12 E-value=5.4e-13 Score=122.63 Aligned_cols=125 Identities=24% Similarity=0.329 Sum_probs=60.1
Q ss_pred eEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCC
Q 038724 298 LRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFT 376 (483)
Q Consensus 298 l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 376 (483)
+..++.++|+++.+|+. ..+.+++.++.++|.+..++++ ++.+..|..++..+|+ +..+|+.++.+..|..|++.+|
T Consensus 93 l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n 170 (565)
T KOG0472|consen 93 LKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN 170 (565)
T ss_pred HHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhcccc
Confidence 33344444444444332 3344445555555555554444 3444445555555543 4444555555555555555555
Q ss_pred CCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCc
Q 038724 377 STLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSL 436 (483)
Q Consensus 377 ~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l 436 (483)
.++.+|+..-+++.|++||...|.+..+ |.+++.|.+|..|++..|++
T Consensus 171 ~l~~l~~~~i~m~~L~~ld~~~N~L~tl------------P~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 171 KLKALPENHIAMKRLKHLDCNSNLLETL------------PPELGGLESLELLYLRRNKI 218 (565)
T ss_pred chhhCCHHHHHHHHHHhcccchhhhhcC------------ChhhcchhhhHHHHhhhccc
Confidence 5555555544455555555555554444 44444444444444444443
No 18
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=1.1e-11 Score=109.90 Aligned_cols=132 Identities=26% Similarity=0.331 Sum_probs=112.8
Q ss_pred cccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 294 KWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
.|..++.+++++|.|+.+... .-.+.++.|++|+|.+..+.. +..+++|..||||+|. +..+-..-.++-|.++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccch-hHhhhhhHhhhcCEeeee
Confidence 678899999999999988776 457899999999999988876 7889999999999995 666666667889999999
Q ss_pred ccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc
Q 038724 373 ISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL 439 (483)
Q Consensus 373 l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 439 (483)
|++|.|.++. ++++|.+|..||+++|++.. ......+++||.|+++.+.+|++..+
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~----------ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSNQIEE----------LDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheeccccccchhh----------HHHhcccccccHHHHHhhcCCCcccc
Confidence 9999999984 68999999999999999652 34556789999999999999997443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.10 E-value=3.3e-10 Score=117.49 Aligned_cols=148 Identities=24% Similarity=0.203 Sum_probs=89.6
Q ss_pred cceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccC
Q 038724 296 LGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISF 375 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 375 (483)
.+++.|++.+|+++.+|. ..++|++|++++|.++.+|.. .++|+.|++++|. +..+|... .+|+.|++++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~ 291 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNP-LTHLPALP---SGLCKLWIFG 291 (788)
T ss_pred cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc----ccccceeeccCCc-hhhhhhch---hhcCEEECcC
Confidence 367888888888888775 357888899988888877642 3567788888875 45555422 4566777777
Q ss_pred CCCCccCccccCCcCCCEEecCCCCCcCCCC----CCCCccchhhHhhhcccc-ccccceeeccCccccCCCC-Cccccc
Q 038724 376 TSTLELPEELKALEKLKYLDMDDHQQVMEEG----NCQSDDAESLLKEMLCLE-QLNIIRLTSCSLCSLCGLP-TVQCLT 449 (483)
Q Consensus 376 ~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~----~~~l~~~~~~~~~l~~l~-~L~~L~l~~~~l~~l~~l~-~l~~l~ 449 (483)
|.+..+|.. +++|+.|++++|.+..+|. +..+.........+..++ +|+.|++++|++..+..++ +|+.|+
T Consensus 292 N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~ 368 (788)
T PRK15387 292 NQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLW 368 (788)
T ss_pred Ccccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCCCcccceeh
Confidence 777777652 3567777777777666543 112211111122222232 5677777777665544332 444444
Q ss_pred ceeeeee
Q 038724 450 SRRLNLE 456 (483)
Q Consensus 450 l~~~~~~ 456 (483)
+++|.+.
T Consensus 369 Ls~N~L~ 375 (788)
T PRK15387 369 AYNNRLT 375 (788)
T ss_pred hhccccc
Confidence 4444443
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.09 E-value=2.5e-09 Score=99.49 Aligned_cols=196 Identities=16% Similarity=0.170 Sum_probs=118.7
Q ss_pred HHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh---hhcCCcEEEEEcCC
Q 038724 9 QVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM---ILSTKKFLLLLDDL 85 (483)
Q Consensus 9 ~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i---~l~~~~~LlvlDdv 85 (483)
-|.+.+..+.+..+.+||++|+||||||+.++... ...|...- ...+.-.+++.+.++- ...|++.+|++|.|
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~s-Av~~gvkdlr~i~e~a~~~~~~gr~tiLflDEI 113 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALS-AVTSGVKDLREIIEEARKNRLLGRRTILFLDEI 113 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEec-cccccHHHHHHHHHHHHHHHhcCCceEEEEehh
Confidence 45677777888999999999999999999999876 44553221 1223333444444433 55589999999999
Q ss_pred CC--ccccccccCCCCCCCCCCEEEE--ecCChhhh-------------hccCChHHHHHHHHHHhcCCc-ccC--CC-C
Q 038724 86 WE--TIDLSKIGVPLPSQKIVSKVVF--TTHSEEVC-------------VDCFTPQESWQVFQMKVGNET-LVS--HP-A 144 (483)
Q Consensus 86 ~~--~~~~~~l~~~~~~~~~gs~ilv--TtR~~~~~-------------l~~L~~~~a~~l~~~~~~~~~-~~~--~~-~ 144 (483)
+. ..+.+.+ +|.-.+|.-|+| ||.++... +++|+.++..+++.+...... ... .. -
T Consensus 114 HRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i 190 (436)
T COG2256 114 HRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVL 190 (436)
T ss_pred hhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccC
Confidence 63 3444444 344456777777 67666554 999999999999988442221 011 11 2
Q ss_pred chhHHHHHHhHcCCchHHH----HHHHHHhcCCCCHHHHHHHHHHHHhcccCCC--Ch--HHHHHhhhcccCCCCc
Q 038724 145 IHKPAKMVAKDCGGLPLAL----TIVGRAMAYKKTPEEWKDAIEILMRSALQFP--GI--NKVYYRLKFSFDRLPS 212 (483)
Q Consensus 145 ~~~~~~~i~~~c~g~Plal----~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~--~~--~~~~~~l~~s~~~L~~ 212 (483)
.++..+.+++.++|--.+. ++++..-+. ......+.+-+.++.....++ +. -.+.+++..|...=++
T Consensus 191 ~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~-~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 191 DEEALDYLVRLSNGDARRALNLLELAALSAEP-DEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred CHHHHHHHHHhcCchHHHHHHHHHHHHHhcCC-CcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCc
Confidence 2346677888888866443 222222222 111112222223333222221 11 1788888888887776
No 21
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.08 E-value=9.1e-09 Score=96.05 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=90.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhH--------------------Hh------
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQD--------------------DM------ 71 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~--------------------~i------ 71 (483)
+.++++|+|++|+||||+++.+++.. .. ... ..+|+... ..+..++.. .+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~~~~-~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKLVNT-RVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeeeeCC-CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 34689999999999999999999876 21 111 12233211 111111111 11
Q ss_pred -hhcCCcEEEEEcCCCCcc--ccccccC---CCCCCCCCCEEEEecCChhh-------------------hhccCChHHH
Q 038724 72 -ILSTKKFLLLLDDLWETI--DLSKIGV---PLPSQKIVSKVVFTTHSEEV-------------------CVDCFTPQES 126 (483)
Q Consensus 72 -~l~~~~~LlvlDdv~~~~--~~~~l~~---~~~~~~~gs~ilvTtR~~~~-------------------~l~~L~~~~a 126 (483)
...++++++|+||++... .++.+.. .-.+......|++|...... .+++++.++.
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 236788999999998763 2333321 11111222344555442211 0889999999
Q ss_pred HHHHHHHhcCCccc-CCCCchhHHHHHHhHcCCchHHHHHHHHHh
Q 038724 127 WQVFQMKVGNETLV-SHPAIHKPAKMVAKDCGGLPLALTIVGRAM 170 (483)
Q Consensus 127 ~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~c~g~Plal~~~~~~l 170 (483)
.+++...+...... ...-..+..+.|++.++|.|..+..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99988776432211 112335788999999999999999888765
No 22
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.07 E-value=1.8e-09 Score=103.34 Aligned_cols=209 Identities=14% Similarity=0.082 Sum_probs=118.0
Q ss_pred CCChhHHHHHHHHHhc-----CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcC
Q 038724 1 IENPKQFYQVWRFLVK-----KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILST 75 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-----~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~ 75 (483)
|||++.++.+..++.. ...+.+.|+|++|+|||++|+++++.. ...+ .++..+.......+..-+..-+
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~~~~~~~l~~~l~~l~ 101 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPALEKPGDLAAILTNLE 101 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecccccChHHHHHHHHhcc
Confidence 6999999999888763 345688999999999999999999987 2222 1222111111112222222224
Q ss_pred CcEEEEEcCCCCccc--cccccCC---------CC----------CCCCCCEEEEecCChhhh------------hccCC
Q 038724 76 KKFLLLLDDLWETID--LSKIGVP---------LP----------SQKIVSKVVFTTHSEEVC------------VDCFT 122 (483)
Q Consensus 76 ~~~LlvlDdv~~~~~--~~~l~~~---------~~----------~~~~gs~ilvTtR~~~~~------------l~~L~ 122 (483)
...+++||+++.... .+.+... +. ...+.+-|.+|++...+. +++++
T Consensus 102 ~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~ 181 (328)
T PRK00080 102 EGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYT 181 (328)
T ss_pred cCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCC
Confidence 566888999864421 1111000 00 001234455666633221 78999
Q ss_pred hHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCCChHHHHHh
Q 038724 123 PQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMAYKKTPEEWKDAIEILMRSALQFPGINKVYYR 202 (483)
Q Consensus 123 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 202 (483)
.++..+++...+..... .-.++.++.|++.|+|.|..+..+...+. .|.... ................
T Consensus 182 ~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 182 VEELEKIVKRSARILGV---EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCCHHHHHHHHHH
Confidence 99999999988765442 23356789999999999976554443321 111100 0000000111133444
Q ss_pred hhcccCCCCchhhhHHHh-hhcCCCCC
Q 038724 203 LKFSFDRLPSDQIRSCFL-FCSPFPGD 228 (483)
Q Consensus 203 l~~s~~~L~~~~~~~~~~-~~a~fp~~ 228 (483)
+...+..|++ ..+..+. ....|+.+
T Consensus 250 ~~~~~~~l~~-~~~~~l~~~~~~~~~~ 275 (328)
T PRK00080 250 LGVDELGLDE-MDRKYLRTIIEKFGGG 275 (328)
T ss_pred hCCCcCCCCH-HHHHHHHHHHHHcCCC
Confidence 5677788887 5556554 44556544
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.03 E-value=5.4e-10 Score=116.51 Aligned_cols=153 Identities=26% Similarity=0.321 Sum_probs=112.0
Q ss_pred cceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccC
Q 038724 296 LGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISF 375 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 375 (483)
..++.|++++|.++.+|.. .+++|+.|++++|.++.+|... .++|+.|+|++|. +..+|..+. .+|++|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSINR-ITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh---hccccEEECcCCc-cCcCChhHh--CCCCEEECcC
Confidence 4688899999999988754 3468999999999998887653 3479999999996 557887764 5899999999
Q ss_pred CCCCccCccccCCcCCCEEecCCCCCcCCCC-CC-CCc---c----chhhHhhhccccccccceeeccCccccCC--CCC
Q 038724 376 TSTLELPEELKALEKLKYLDMDDHQQVMEEG-NC-QSD---D----AESLLKEMLCLEQLNIIRLTSCSLCSLCG--LPT 444 (483)
Q Consensus 376 ~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~-~~-~l~---~----~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--l~~ 444 (483)
|++..+|..+. ++|+.|++++|++..+|. +. .+. . ....|..+ .++|+.|++++|++..+.. .++
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~~s 347 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPASLPPE 347 (754)
T ss_pred CccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccCCccccCChhhcCc
Confidence 99999998764 589999999998887654 21 111 0 01111111 2578888999988766542 257
Q ss_pred cccccceeeeeeeee
Q 038724 445 VQCLTSRRLNLEVED 459 (483)
Q Consensus 445 l~~l~l~~~~~~~~~ 459 (483)
|+.|++++|++...+
T Consensus 348 L~~L~Ls~N~L~~LP 362 (754)
T PRK15370 348 LQVLDVSKNQITVLP 362 (754)
T ss_pred ccEEECCCCCCCcCC
Confidence 888888888877443
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.02 E-value=1.6e-11 Score=112.94 Aligned_cols=103 Identities=26% Similarity=0.293 Sum_probs=52.9
Q ss_pred ceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccC-CccCccCC-cccccCcCCCEEe
Q 038724 297 GLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSY-NRFLTKLP-SGISKLVSLQHLD 372 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p-~~~~~l~~L~~L~ 372 (483)
....+.|..|.|+.+|+. ..+++|+.||||+|.|+.+.|..|++++.|..|-+-+ |+ +..+| ..|+.|..|+-|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk-I~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK-ITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc-hhhhhhhHhhhHHHHHHHh
Confidence 344566666666666654 3566666666666666666666666666654444433 43 34444 2344444444444
Q ss_pred ccCCCCCccCcc-ccCCcCCCEEecCCCC
Q 038724 373 ISFTSTLELPEE-LKALEKLKYLDMDDHQ 400 (483)
Q Consensus 373 l~~~~i~~lp~~-~~~l~~L~~L~l~~n~ 400 (483)
+.-|++.-++.. +..|++|..|.+..|.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchh
Confidence 444444333332 4444444444444443
No 25
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.01 E-value=3.7e-09 Score=100.58 Aligned_cols=159 Identities=17% Similarity=0.117 Sum_probs=99.6
Q ss_pred CCChhHHHHHHHHHhc-----CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcC
Q 038724 1 IENPKQFYQVWRFLVK-----KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILST 75 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-----~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~ 75 (483)
||+++.+++|..++.. ...+.+.++|++|+|||+||+++++.. ...+ ..+..+.......+...+..-+
T Consensus 7 iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l~~~l~~~~ 80 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDLAAILTNLE 80 (305)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhHHHHHHhcc
Confidence 7999999999998872 345678999999999999999999977 2222 1222221122223333333334
Q ss_pred CcEEEEEcCCCCccc--cccccCCC-------------------CCCCCCCEEEEecCChhhh------------hccCC
Q 038724 76 KKFLLLLDDLWETID--LSKIGVPL-------------------PSQKIVSKVVFTTHSEEVC------------VDCFT 122 (483)
Q Consensus 76 ~~~LlvlDdv~~~~~--~~~l~~~~-------------------~~~~~gs~ilvTtR~~~~~------------l~~L~ 122 (483)
...++++|+++.... .+.+...+ ....+.+-|.+||+...+. +++++
T Consensus 81 ~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~ 160 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYT 160 (305)
T ss_pred cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCC
Confidence 567889999864311 11111000 0011234555566643221 88999
Q ss_pred hHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHH
Q 038724 123 PQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGR 168 (483)
Q Consensus 123 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~ 168 (483)
.++..+++.+.+.... ..-.++..+.|++.|+|.|..+..++.
T Consensus 161 ~~e~~~il~~~~~~~~---~~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 161 VEELAEIVSRSAGLLN---VEIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HHHHHHHHHHHHHHhC---CCcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 9999999998876433 123356678999999999977655554
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.01 E-value=1.1e-09 Score=113.58 Aligned_cols=76 Identities=25% Similarity=0.238 Sum_probs=35.3
Q ss_pred cccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCccccCCcCCCEEecCC
Q 038724 319 HLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEELKALEKLKYLDMDD 398 (483)
Q Consensus 319 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 398 (483)
+|..|++++|.++.+|. .+++|+.|++++|++ ..+|... .+|+.|++++|.+..+|.. ..+|+.|+|++
T Consensus 283 ~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L-~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~ 351 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQL-ASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSD 351 (788)
T ss_pred hcCEEECcCCccccccc----cccccceeECCCCcc-ccCCCCc---ccccccccccCcccccccc---ccccceEecCC
Confidence 34444444444444433 135577777777653 3344321 2233344444444444321 13455666666
Q ss_pred CCCcCCC
Q 038724 399 HQQVMEE 405 (483)
Q Consensus 399 n~~~~~p 405 (483)
|++..+|
T Consensus 352 N~Ls~LP 358 (788)
T PRK15387 352 NQLASLP 358 (788)
T ss_pred CccCCCC
Confidence 6555543
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.00 E-value=2.1e-09 Score=119.47 Aligned_cols=107 Identities=24% Similarity=0.316 Sum_probs=86.0
Q ss_pred ccceEEEEccccccccccCC-CCCCcccEEEecCCc-cccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 295 WLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNY-LQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
..+|+.|++.+|.+..++.. ..+++|+.|+|+++. +..+|. ++.+++|+.|++++|..+..+|..++.+++|++|+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 46788999999998887654 568899999998764 555553 77888999999999887888999999999999999
Q ss_pred ccCCC-CCccCccccCCcCCCEEecCCCCCcCC
Q 038724 373 ISFTS-TLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 373 l~~~~-i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
+++|. +..+|..+ ++++|+.|++++|.....
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKS 719 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccc
Confidence 99876 88888766 678888888887764443
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.00 E-value=2.4e-11 Score=122.95 Aligned_cols=126 Identities=28% Similarity=0.357 Sum_probs=86.8
Q ss_pred ceEEEEcccccccc--ccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEecc
Q 038724 297 GLRRMSLMNNQIKT--LLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDIS 374 (483)
Q Consensus 297 ~l~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 374 (483)
.|+.|.+.+|.++. +|....+++|+.|+|++|.+..+|...+.++..|+.|+||||+ +..+|..+..+..|++|...
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhc
Confidence 34455556665543 2333566777778888777777777777777777777888875 67777777777777777777
Q ss_pred CCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccC
Q 038724 375 FTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCS 435 (483)
Q Consensus 375 ~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~ 435 (483)
+|.+..+| .+..++.|+.+|++.|.+.. ...++.+.. ++|++|+++||.
T Consensus 439 sN~l~~fP-e~~~l~qL~~lDlS~N~L~~----------~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 439 SNQLLSFP-ELAQLPQLKVLDLSCNNLSE----------VTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred CCceeech-hhhhcCcceEEecccchhhh----------hhhhhhCCC-cccceeeccCCc
Confidence 77777777 67777777888887777542 222233332 678888888876
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.00 E-value=3.8e-11 Score=121.57 Aligned_cols=154 Identities=29% Similarity=0.402 Sum_probs=117.1
Q ss_pred CccccccccceEEEEccccccccccCC---------------------------CCCCcccEEEecCCccccccchhhhc
Q 038724 288 VPSDALKWLGLRRMSLMNNQIKTLLNT---------------------------PSCPHLLTLFLNDNYLQDIKNGFFQF 340 (483)
Q Consensus 288 ~~~~~~~~~~l~~l~l~~~~~~~~~~~---------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~ 340 (483)
+++.....+.++.|++..|++..+|.. ..++.|+.|.+.+|.+.+-.-..+..
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 344555678899999999988877642 12345677777788776543333778
Q ss_pred CCCccEEEccCCccCccCC-cccccCcCCCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhh
Q 038724 341 MPCLKVLNLSYNRFLTKLP-SGISKLVSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKE 419 (483)
Q Consensus 341 l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~ 419 (483)
+++|++|+|++|+ ++.+| ..+.++..|+.|+|+||.++.+|.++..++.|++|...+|++. ..| +
T Consensus 382 ~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~------------~fP-e 447 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL------------SFP-E 447 (1081)
T ss_pred ccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee------------ech-h
Confidence 8999999999996 66666 4577888999999999999999988999999999999999854 344 6
Q ss_pred hccccccccceeeccCcccc---CCC--CCcccccceeeee
Q 038724 420 MLCLEQLNIIRLTSCSLCSL---CGL--PTVQCLTSRRLNL 455 (483)
Q Consensus 420 l~~l~~L~~L~l~~~~l~~l---~~l--~~l~~l~l~~~~~ 455 (483)
+..+++|+.++++.|.++.+ ..+ ++|+.|+++.|..
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 88899999999999998543 222 5778887776653
No 30
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=1.5e-09 Score=93.32 Aligned_cols=114 Identities=19% Similarity=0.286 Sum_probs=77.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCC----CCEEEEEEeCCCcCcc---chhHHh------------------hhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPG----FDVVIWVVVSKELKLE---TSQDDM------------------ILS 74 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~----f~~~~~v~~~~~~~~~---~~~~~i------------------~l~ 74 (483)
|++.|+|.+|+||||++++++.+.. .... +...+|+......... .+...+ ..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEK 79 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHc
Confidence 5899999999999999999998772 2222 3456666554433222 222222 346
Q ss_pred CCcEEEEEcCCCCccccc---------ccc-CCCCC-CCCCCEEEEecCChhhh-------------hccCChHHHHHHH
Q 038724 75 TKKFLLLLDDLWETIDLS---------KIG-VPLPS-QKIVSKVVFTTHSEEVC-------------VDCFTPQESWQVF 130 (483)
Q Consensus 75 ~~~~LlvlDdv~~~~~~~---------~l~-~~~~~-~~~gs~ilvTtR~~~~~-------------l~~L~~~~a~~l~ 130 (483)
.+++++|+|++++...-. .+. ..++. ..++++++||+|..... +++|++++..+++
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYL 159 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHH
Confidence 899999999997664311 111 12222 24579999999988772 8899999999888
Q ss_pred HHHh
Q 038724 131 QMKV 134 (483)
Q Consensus 131 ~~~~ 134 (483)
.++.
T Consensus 160 ~~~f 163 (166)
T PF05729_consen 160 RKYF 163 (166)
T ss_pred HHHh
Confidence 7765
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=9.7e-12 Score=119.39 Aligned_cols=135 Identities=26% Similarity=0.365 Sum_probs=94.8
Q ss_pred CccccccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcC
Q 038724 288 VPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVS 367 (483)
Q Consensus 288 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 367 (483)
+++....+..++.++++.|+++.+|.....--|+.|.+++|+++.+|+. ++....|..||.+.|. +..+|..++.+..
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~ne-i~slpsql~~l~s 190 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNE-IQSLPSQLGYLTS 190 (722)
T ss_pred cchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhhh-hhhchHHhhhHHH
Confidence 4455556667777777777777776654455577777777777777766 4566777777777774 6667777777777
Q ss_pred CCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcc
Q 038724 368 LQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLC 437 (483)
Q Consensus 368 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~ 437 (483)
|+.|+++.|++..+|+.+..| .|..||++.|++. .+|-.|.+|..|+.|-|.+|++.
T Consensus 191 lr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis------------~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS------------YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred HHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee------------ecchhhhhhhhheeeeeccCCCC
Confidence 777777777777777776644 5777777777754 34456777777777777777764
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.99 E-value=7.3e-10 Score=115.56 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=103.0
Q ss_pred cceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccC
Q 038724 296 LGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISF 375 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 375 (483)
.+|+.|++++|.++.+|.. ...+|+.|+|++|.+..+|... .++|+.|++++|+ +..+|..+. .+|++|++++
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~LP~~l---~s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITELPERL---PSALQSLDLFHNK-ISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred cCCCEEECCCCccccCChh-hhccccEEECcCCccCcCChhH---hCCCCEEECcCCc-cCccccccC--CCCcEEECCC
Confidence 4678888888888877642 2357888888888888776653 2468888888886 456776654 4788888888
Q ss_pred CCCCccCccccCCcCCCEEecCCCCCcCCCC-C-CCCc-------cchhhHhhhccccccccceeeccCccccCC--CCC
Q 038724 376 TSTLELPEELKALEKLKYLDMDDHQQVMEEG-N-CQSD-------DAESLLKEMLCLEQLNIIRLTSCSLCSLCG--LPT 444 (483)
Q Consensus 376 ~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~-~-~~l~-------~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--l~~ 444 (483)
|++..+|..+. ++|+.|++++|.+..+|. + ..+. ....+|..+ .++|+.|++++|++..+.. .+.
T Consensus 293 N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp~~ 368 (754)
T PRK15370 293 NSIRTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLPPT 368 (754)
T ss_pred CccccCcccch--hhHHHHHhcCCccccCCccccccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhcCC
Confidence 88888876543 467777777777665543 1 1121 011122222 2589999999999875532 357
Q ss_pred cccccceeeeeeee
Q 038724 445 VQCLTSRRLNLEVE 458 (483)
Q Consensus 445 l~~l~l~~~~~~~~ 458 (483)
|+.|++++|++...
T Consensus 369 L~~LdLs~N~Lt~L 382 (754)
T PRK15370 369 ITTLDVSRNALTNL 382 (754)
T ss_pred cCEEECCCCcCCCC
Confidence 88999998887643
No 33
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.90 E-value=1.5e-08 Score=100.23 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=95.1
Q ss_pred CCChhHHHHHHHHHhc----CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccc----------
Q 038724 1 IENPKQFYQVWRFLVK----KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLET---------- 66 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~----~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~---------- 66 (483)
+||++++++|...+.+ ...+.+.|+|++|+|||++++.++++. ......-..+++......+...
T Consensus 33 ~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 111 (394)
T PRK00411 33 PHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIARQLF 111 (394)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHHHHhc
Confidence 6899999999999843 244678999999999999999999987 2222122345565433222111
Q ss_pred -------------hhHHh----hhcCCcEEEEEcCCCCcc------ccccccCCCCCCCCCCE--EEEecCChhhh----
Q 038724 67 -------------SQDDM----ILSTKKFLLLLDDLWETI------DLSKIGVPLPSQKIVSK--VVFTTHSEEVC---- 117 (483)
Q Consensus 67 -------------~~~~i----~l~~~~~LlvlDdv~~~~------~~~~l~~~~~~~~~gs~--ilvTtR~~~~~---- 117 (483)
+...+ .-.+++.+||||+++... .+..+...+.. ..+++ +|.++......
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~ 190 (394)
T PRK00411 112 GHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILD 190 (394)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcC
Confidence 11111 224567899999997642 12222222211 12222 44444433211
Q ss_pred -------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHc----CCchHHHHHHHH
Q 038724 118 -------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDC----GGLPLALTIVGR 168 (483)
Q Consensus 118 -------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c----~g~Plal~~~~~ 168 (483)
+.+++.++..+++...+.... ....-..+..+.+++.+ |..+.|+.++-.
T Consensus 191 ~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 191 PRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred HHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 778999999999887663211 01111233445555444 556777766643
No 34
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=2.4e-08 Score=101.53 Aligned_cols=163 Identities=13% Similarity=0.144 Sum_probs=109.1
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER------------------PGFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~~v~~~~~ 61 (483)
||.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++...... +.|.-.++++.+..
T Consensus 19 IGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~ 98 (830)
T PRK07003 19 VGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASN 98 (830)
T ss_pred cCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEeccccc
Confidence 6889999999999998764 4568999999999999999988662110 11222455554444
Q ss_pred cCccch---hHHh---hhcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCChhhh------------hccC
Q 038724 62 LKLETS---QDDM---ILSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCF 121 (483)
Q Consensus 62 ~~~~~~---~~~i---~l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L 121 (483)
....++ ++.. ...++.-++|||+++.... +..++..+.......++|++|++.... ++++
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~L 178 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCc
Confidence 433333 3322 2345667899999987643 555555554444467777766655433 8899
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH-HHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL-ALTIV 166 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-al~~~ 166 (483)
+.++..+.+.+....+.. .-..+..+.|++.++|... ++..+
T Consensus 179 s~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 179 PAGHIVSHLERILGEERI---AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred CHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999888765542 2235667889999988654 55443
No 35
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.89 E-value=5.2e-09 Score=111.29 Aligned_cols=221 Identities=12% Similarity=0.137 Sum_probs=140.1
Q ss_pred CCChhHHHHHHHHHhc---CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh------
Q 038724 1 IENPKQFYQVWRFLVK---KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM------ 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~---~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i------ 71 (483)
+||+.+++.|...+.+ +...++.+.|.+|||||+++++|.+...+.++.|-...+-....+.....+.+.+
T Consensus 3 ~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~~ 82 (849)
T COG3899 3 YGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMGQ 82 (849)
T ss_pred CchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHHH
Confidence 6999999999999985 4567999999999999999999999874332332111111222222221111111
Q ss_pred -------------------------------------------------------------------hhcCCcEEEEEcC
Q 038724 72 -------------------------------------------------------------------ILSTKKFLLLLDD 84 (483)
Q Consensus 72 -------------------------------------------------------------------~l~~~~~LlvlDd 84 (483)
..+.++.++|+||
T Consensus 83 ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~leD 162 (849)
T COG3899 83 LLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLED 162 (849)
T ss_pred HhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEec
Confidence 4557799999999
Q ss_pred CCCcc-ccccccCCCCCCCC-----CCEEE--EecCChhhh------------hccCChHHHHHHHHHHhcCCcccCCCC
Q 038724 85 LWETI-DLSKIGVPLPSQKI-----VSKVV--FTTHSEEVC------------VDCFTPQESWQVFQMKVGNETLVSHPA 144 (483)
Q Consensus 85 v~~~~-~~~~l~~~~~~~~~-----gs~il--vTtR~~~~~------------l~~L~~~~a~~l~~~~~~~~~~~~~~~ 144 (483)
+.-.+ ....+...+..... -..+. .|.+...-. +.||+..+...+.....+... ..
T Consensus 163 lhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~~ 238 (849)
T COG3899 163 LHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----LL 238 (849)
T ss_pred ccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----cc
Confidence 94332 21111111110000 01122 222222111 999999999999998886633 34
Q ss_pred chhHHHHHHhHcCCchHHHHHHHHHhcCC------CCHHHHHHHHHHHHhcccCCCChHHHHHhhhcccCCCCchhhhHH
Q 038724 145 IHKPAKMVAKDCGGLPLALTIVGRAMAYK------KTPEEWKDAIEILMRSALQFPGINKVYYRLKFSFDRLPSDQIRSC 218 (483)
Q Consensus 145 ~~~~~~~i~~~c~g~Plal~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~ 218 (483)
..+..+.|+++..|+|+-+..+-..+... .+...|..-... .......+.+...+..-.+.||. ..|+.
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~----i~~~~~~~~vv~~l~~rl~kL~~-~t~~V 313 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS----LGILATTDAVVEFLAARLQKLPG-TTREV 313 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh----cCCchhhHHHHHHHHHHHhcCCH-HHHHH
Confidence 45678999999999999999888887653 344555542211 12222333566678889999999 79999
Q ss_pred HhhhcCCCCCCc
Q 038724 219 FLFCSPFPGDYR 230 (483)
Q Consensus 219 ~~~~a~fp~~~~ 230 (483)
+...|++...+.
T Consensus 314 l~~AA~iG~~F~ 325 (849)
T COG3899 314 LKAAACIGNRFD 325 (849)
T ss_pred HHHHHHhCccCC
Confidence 999998876554
No 36
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.88 E-value=1.1e-08 Score=100.94 Aligned_cols=158 Identities=11% Similarity=0.107 Sum_probs=100.4
Q ss_pred CCChhHHHH---HHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC--CcCccchhHHh---h
Q 038724 1 IENPKQFYQ---VWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK--ELKLETSQDDM---I 72 (483)
Q Consensus 1 vgr~~~~~~---l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~~~~i---~ 72 (483)
||++..+.+ +.+++.....+.+.|+|++|+||||+|+.+++.. ...|. .+..+. ..+++.+.... .
T Consensus 15 vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~---~l~a~~~~~~~ir~ii~~~~~~~ 88 (413)
T PRK13342 15 VGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPFE---ALSAVTSGVKDLREVIEEARQRR 88 (413)
T ss_pred cCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEecccccHHHHHHHHHHHHHhh
Confidence 678888776 8888888877889999999999999999999876 33331 122111 11222333332 2
Q ss_pred hcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEE--ecCChhhh-------------hccCChHHHHHHHHHHhc
Q 038724 73 LSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVF--TTHSEEVC-------------VDCFTPQESWQVFQMKVG 135 (483)
Q Consensus 73 l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilv--TtR~~~~~-------------l~~L~~~~a~~l~~~~~~ 135 (483)
..+++.+|+||+++... +.+.+...+. .+..+++ ||.+.... +.+++.++..+++.....
T Consensus 89 ~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 89 SAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred hcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHH
Confidence 34578899999998652 3344433332 2444444 44443322 789999999999988664
Q ss_pred CCcccCCCCchhHHHHHHhHcCCchHHHHHHH
Q 038724 136 NETLVSHPAIHKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 167 (483)
........-..+..+.+++.|+|.+..+.-+.
T Consensus 166 ~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 166 DKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 32100012335667889999999997765443
No 37
>PRK04195 replication factor C large subunit; Provisional
Probab=98.86 E-value=8.8e-08 Score=96.54 Aligned_cols=154 Identities=18% Similarity=0.216 Sum_probs=98.6
Q ss_pred CCChhHHHHHHHHHhcC----CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh-----
Q 038724 1 IENPKQFYQVWRFLVKK----DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM----- 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~----~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i----- 71 (483)
||+++.++++.+|+..- ..+.+.|+|++|+||||+|+++++.. .++ .+-++.++......+...+
T Consensus 17 vg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~i~~~i~~~~~ 90 (482)
T PRK04195 17 VGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADVIERVAGEAAT 90 (482)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHHHHHHHHHhhc
Confidence 68899999999998742 26789999999999999999999977 233 2334444433322222222
Q ss_pred --hhcC-CcEEEEEcCCCCccc------cccccCCCCCCCCCCEEEEecCChh------hh-------hccCChHHHHHH
Q 038724 72 --ILST-KKFLLLLDDLWETID------LSKIGVPLPSQKIVSKVVFTTHSEE------VC-------VDCFTPQESWQV 129 (483)
Q Consensus 72 --~l~~-~~~LlvlDdv~~~~~------~~~l~~~~~~~~~gs~ilvTtR~~~------~~-------l~~L~~~~a~~l 129 (483)
.+.+ ++.+||||+++.... +..+...+.. ....+|+++.+.. +. +.+++.++....
T Consensus 91 ~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~ 168 (482)
T PRK04195 91 SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPV 168 (482)
T ss_pred cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHH
Confidence 2233 678999999976532 3333333321 2244555553221 11 778888888888
Q ss_pred HHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHH
Q 038724 130 FQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTI 165 (483)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 165 (483)
+......... .-..+..+.|++.++|....+..
T Consensus 169 L~~i~~~egi---~i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 169 LKRICRKEGI---ECDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred HHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 8877754442 22356788999999987765543
No 38
>PLN03025 replication factor C subunit; Provisional
Probab=98.85 E-value=3.1e-08 Score=94.46 Aligned_cols=158 Identities=12% Similarity=0.161 Sum_probs=100.1
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEeCCCcCccchhHHh---h----
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFD-VVIWVVVSKELKLETSQDDM---I---- 72 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~~v~~~~~~~~~~~~~~i---~---- 72 (483)
||.++.++.|.+++..+..+.+.++|++|+||||+|.++++... ...|. .++-+..++......+...+ .
T Consensus 16 ~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~ 93 (319)
T PLN03025 16 VGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKV 93 (319)
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHHHHHHHHHHhccc
Confidence 57788889999888887777788999999999999999998761 11222 22223334333333333222 1
Q ss_pred --hcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHHHHHHHHhcC
Q 038724 73 --LSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESWQVFQMKVGN 136 (483)
Q Consensus 73 --l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~~l~~~~~~~ 136 (483)
..++.-++|||+++.... ...+...+......+++++++...... ++++++++....+...+..
T Consensus 94 ~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 94 TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH
Confidence 124577999999986632 233333332233456666665332111 8889999988888887755
Q ss_pred CcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 137 ETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
++. .-.++..+.|++.++|....+
T Consensus 174 egi---~i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 174 EKV---PYVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 442 223456788999998876443
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.2e-10 Score=112.09 Aligned_cols=169 Identities=30% Similarity=0.411 Sum_probs=128.1
Q ss_pred cccccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCE
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQH 370 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 370 (483)
+..+..|..+.+..|.+..++.. ..+..|.+|+|+.|+++.+|.. ++.++ |++|-+++|+ ++.+|..++.+..|..
T Consensus 94 ~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ 170 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAH 170 (722)
T ss_pred HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcCc-ceeEEEecCc-cccCCcccccchhHHH
Confidence 33455566677777777766654 5677788888888888877776 56666 7888888885 7778888887788888
Q ss_pred EeccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcc----ccCCCCCcc
Q 038724 371 LDISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLC----SLCGLPTVQ 446 (483)
Q Consensus 371 L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~----~l~~l~~l~ 446 (483)
||.+.|.+..+|..++++.+|+.|+++.|++ ...|+++..| .|..|+++.|++. ++.+|..|+
T Consensus 171 ld~s~nei~slpsql~~l~slr~l~vrRn~l------------~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 171 LDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL------------EDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQ 237 (722)
T ss_pred hhhhhhhhhhchHHhhhHHHHHHHHHhhhhh------------hhCCHHHhCC-ceeeeecccCceeecchhhhhhhhhe
Confidence 8888888888888888888888888888874 4566677755 6899999999984 578999999
Q ss_pred cccceeeeeeeeecccc-cCccc--eeecCCcc
Q 038724 447 CLTSRRLNLEVEDWHKC-TGEVH--KVLQSGGS 476 (483)
Q Consensus 447 ~l~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~ 476 (483)
.|.+.+|-+...+..-| .|.+| ++|+..-+
T Consensus 238 ~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 238 VLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 99999999988776655 45677 66665433
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.82 E-value=1.3e-08 Score=91.90 Aligned_cols=142 Identities=15% Similarity=0.147 Sum_probs=86.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-ccchhHHhhhcCCcEEEEEcCCCCc---cccc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK-LETSQDDMILSTKKFLLLLDDLWET---IDLS 92 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~l~~~~~LlvlDdv~~~---~~~~ 92 (483)
...+.+.|+|++|+|||.|+.++++... .....+.|+++..... ..++... + .+.-+|||||+|.. ..|.
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~~~~~~~~~~--~-~~~dlLilDDi~~~~~~~~~~ 110 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQYFSPAVLEN--L-EQQDLVCLDDLQAVIGNEEWE 110 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhhhhhHHHHhh--c-ccCCEEEEeChhhhcCChHHH
Confidence 3446789999999999999999999862 2233467777642111 1111111 1 23458999999864 2232
Q ss_pred -cccCCCCCC-CCCCEEEE-ecCCh---------hhh----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHH
Q 038724 93 -KIGVPLPSQ-KIVSKVVF-TTHSE---------EVC----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAK 150 (483)
Q Consensus 93 -~l~~~~~~~-~~gs~ilv-TtR~~---------~~~----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 150 (483)
.+...+... ..|+.+++ |++.. .+. ++++++++.++++.+.+.... ..-.++..+
T Consensus 111 ~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~---l~l~~~v~~ 187 (229)
T PRK06893 111 LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG---IELSDEVAN 187 (229)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHH
Confidence 122222211 23555554 44431 111 889999999999998876443 233456678
Q ss_pred HHHhHcCCchHHHHHHH
Q 038724 151 MVAKDCGGLPLALTIVG 167 (483)
Q Consensus 151 ~i~~~c~g~Plal~~~~ 167 (483)
-|++.+.|....+..+-
T Consensus 188 ~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 188 FLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHhccCCHHHHHHHH
Confidence 88888887776665443
No 41
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=8.6e-08 Score=96.24 Aligned_cols=163 Identities=13% Similarity=0.144 Sum_probs=107.2
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccC-----C------------------CCCCEEEEE
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSE-----R------------------PGFDVVIWV 56 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~-----~------------------~~f~~~~~v 56 (483)
||-+..++.|.+++..++.. .+.++|+.|+||||+|+.+++..... . +.|.-.+.+
T Consensus 19 IGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEI 98 (700)
T PRK12323 19 VGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEM 98 (700)
T ss_pred cCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEe
Confidence 68888999999999987654 56899999999999999998876210 0 011123444
Q ss_pred EeCCCcCccch---hHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEE-ecCChhhh----------
Q 038724 57 VVSKELKLETS---QDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVF-TTHSEEVC---------- 117 (483)
Q Consensus 57 ~~~~~~~~~~~---~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilv-TtR~~~~~---------- 117 (483)
..+....+.++ .+.+ ...++.-++|||+++... ....++..+.....++++|+ ||....+.
T Consensus 99 dAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f 178 (700)
T PRK12323 99 DAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQF 178 (700)
T ss_pred cccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhc
Confidence 44433333333 3332 245677899999998663 45566666654444555555 44444333
Q ss_pred -hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 118 -VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 118 -l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
+..++.++..+.+.+....+.. ....+..+.|++.++|.|.....+
T Consensus 179 ~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 179 NLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred ccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 8899999999988877654431 222455688999999999655433
No 42
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=8.1e-08 Score=96.63 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=106.7
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccC------------------CCCCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSE------------------RPGFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~------------------~~~f~~~~~v~~~~~ 61 (483)
||.+..+..|..++..++. ..+.++|+.|+||||+|+.+++..... .+.+.-++.+..+..
T Consensus 18 IGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~ 97 (702)
T PRK14960 18 VGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR 97 (702)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc
Confidence 6899999999999998764 577999999999999999998876210 011212344444433
Q ss_pred cCccch---hHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccC
Q 038724 62 LKLETS---QDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCF 121 (483)
Q Consensus 62 ~~~~~~---~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L 121 (483)
....++ ...+ ...++.-++|||+|+... ....+...+.....+.++|++|.+.... +.++
T Consensus 98 ~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpL 177 (702)
T PRK14960 98 TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPL 177 (702)
T ss_pred CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCC
Confidence 333333 2222 334677899999998653 3445555554444456777766553222 8899
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALT 164 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~ 164 (483)
+.++..+.+...+..+. ..-..+....|++.++|.+..+.
T Consensus 178 s~eEI~k~L~~Il~kEg---I~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 178 AVDEITKHLGAILEKEQ---IAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHH
Confidence 99999988888775543 12334567889999999775543
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.81 E-value=1.1e-08 Score=105.99 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=88.0
Q ss_pred cccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCC-CccCccccCCcCCCEEecC
Q 038724 319 HLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTST-LELPEELKALEKLKYLDMD 397 (483)
Q Consensus 319 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i-~~lp~~~~~l~~L~~L~l~ 397 (483)
.+..|+|++|.+.+..+..++.+++|+.|+|++|.+.+.+|..++.+++|++|++++|++ +.+|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 478899999999877777789999999999999988889999999999999999999995 4788889999999999999
Q ss_pred CCCCcCCCCCCCCccchhhHhhhccc-cccccceeeccCc
Q 038724 398 DHQQVMEEGNCQSDDAESLLKEMLCL-EQLNIIRLTSCSL 436 (483)
Q Consensus 398 ~n~~~~~p~~~~l~~~~~~~~~l~~l-~~L~~L~l~~~~l 436 (483)
+|.+... .|..++.+ .++..+++.+|+.
T Consensus 499 ~N~l~g~-----------iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGR-----------VPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCccccc-----------CChHHhhccccCceEEecCCcc
Confidence 9987643 33344432 4667788888863
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.81 E-value=2.8e-08 Score=90.19 Aligned_cols=155 Identities=11% Similarity=0.078 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc-cchhHHhhhcCCcEEEEE
Q 038724 4 PKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL-ETSQDDMILSTKKFLLLL 82 (483)
Q Consensus 4 ~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~-~~~~~~i~l~~~~~Llvl 82 (483)
+..++++.+++.....+.+.|+|++|+|||++|+++++... ......+|++++.-... .++.. .+ .+.-+|||
T Consensus 23 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~--~~-~~~~lLvI 96 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQADPEVLE--GL-EQADLVCL 96 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHHhHHHHHh--hc-ccCCEEEE
Confidence 45677888887666677999999999999999999998762 22334566665433211 11111 12 23348999
Q ss_pred cCCCCccc----cccccCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCc
Q 038724 83 DDLWETID----LSKIGVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNET 138 (483)
Q Consensus 83 Ddv~~~~~----~~~l~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~ 138 (483)
||++.... ...+...+.. ...+.++|+|++..... +.++++++...++........
T Consensus 97 Ddi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~ 176 (226)
T TIGR03420 97 DDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG 176 (226)
T ss_pred eChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC
Confidence 99975432 2222222211 12235788887743210 677788777777766543222
Q ss_pred ccCCCCchhHHHHHHhHcCCchHHHHHHH
Q 038724 139 LVSHPAIHKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 139 ~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 167 (483)
..-..+..+.+++.+.|+|..+.-+.
T Consensus 177 ---~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 177 ---LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred ---CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 12234556777777888877665554
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.80 E-value=1.6e-07 Score=81.77 Aligned_cols=162 Identities=14% Similarity=0.107 Sum_probs=87.8
Q ss_pred CCChhHHHHHHHHHh-----cCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcC
Q 038724 1 IENPKQFYQVWRFLV-----KKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILST 75 (483)
Q Consensus 1 vgr~~~~~~l~~~l~-----~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~ 75 (483)
||-+..++.+.-.+. .+....+.+||++|+||||||..+++.. ...|. +.+...-....++..-+..-+
T Consensus 27 iGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl~~il~~l~ 100 (233)
T PF05496_consen 27 IGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDLAAILTNLK 100 (233)
T ss_dssp -S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHHHHHHHT--
T ss_pred cCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHHHHHHHhcC
Confidence 566777776655443 2356789999999999999999999988 44442 232221112233333332234
Q ss_pred CcEEEEEcCCCCcc--ccccc------------cCCCCC-------CCCCCEEEEecCChhhh------------hccCC
Q 038724 76 KKFLLLLDDLWETI--DLSKI------------GVPLPS-------QKIVSKVVFTTHSEEVC------------VDCFT 122 (483)
Q Consensus 76 ~~~LlvlDdv~~~~--~~~~l------------~~~~~~-------~~~gs~ilvTtR~~~~~------------l~~L~ 122 (483)
++-+|++|+++.-. +-+.+ ...-+. -.+-+-|=.|||.-.+. ++..+
T Consensus 101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~ 180 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYS 180 (233)
T ss_dssp TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----T
T ss_pred CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCC
Confidence 56688899997541 11111 111110 01234566788876554 77788
Q ss_pred hHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhc
Q 038724 123 PQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMA 171 (483)
Q Consensus 123 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~ 171 (483)
.+|-.+++.+.+..-. ..-..+.+.+|+.+|.|-|.-..-+-+.++
T Consensus 181 ~~el~~Iv~r~a~~l~---i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 181 EEELAKIVKRSARILN---IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp HHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC---CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 8888888876664333 233457789999999999976655444443
No 46
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.79 E-value=7.4e-08 Score=93.13 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=99.6
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEeCCCc-----------C-----
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFD-VVIWVVVSKEL-----------K----- 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~~v~~~~~~-----------~----- 63 (483)
+|+++.++.+.+++..+..+.+.++|++|+||||+|+++++... . ..+. ..+++++++-. .
T Consensus 18 ~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~-~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 95 (337)
T PRK12402 18 LGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY-G-DPWENNFTEFNVADFFDQGKKYLVEDPRFAHFL 95 (337)
T ss_pred cCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc-C-cccccceEEechhhhhhcchhhhhcCcchhhhh
Confidence 68999999999999888767889999999999999999988762 1 1111 23444443210 0
Q ss_pred ---------ccchhHHh--------hhcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCChhhh-------
Q 038724 64 ---------LETSQDDM--------ILSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSEEVC------- 117 (483)
Q Consensus 64 ---------~~~~~~~i--------~l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~~~~------- 117 (483)
..+..+.+ ...+.+-+||+||++.... ...+...+......+++|+|+......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr 175 (337)
T PRK12402 96 GTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSR 175 (337)
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCC
Confidence 01111111 1224456899999975532 223333332233346777776443211
Q ss_pred -----hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHH
Q 038724 118 -----VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALT 164 (483)
Q Consensus 118 -----l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~ 164 (483)
+.+++.++..+.+...+..... .-..+..+.+++.++|.+..+.
T Consensus 176 ~~~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 176 CLPLFFRAPTDDELVDVLESIAEAEGV---DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 7788998988888877654431 2335668889999988765553
No 47
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.79 E-value=2.1e-08 Score=84.21 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=73.7
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchh-----------H
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQ-----------D 69 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~-----------~ 69 (483)
+||++.+.++...+.....+.+.|+|++|+|||++++++++... ..-..++++............ .
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLF 77 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHH
Confidence 58999999999999886667899999999999999999999872 222345666655433322111 1
Q ss_pred HhhhcCCcEEEEEcCCCCc-----cccccccCCCCCC---CCCCEEEEecCCh
Q 038724 70 DMILSTKKFLLLLDDLWET-----IDLSKIGVPLPSQ---KIVSKVVFTTHSE 114 (483)
Q Consensus 70 ~i~l~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~---~~gs~ilvTtR~~ 114 (483)
......++.++|+||++.. ..+.......... ..+..+++||...
T Consensus 78 ~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 1244567889999999853 1122222222211 3567888887765
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=1.2e-07 Score=91.91 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=101.7
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER------------------PGFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~~v~~~~~ 61 (483)
||-+..++.+...+..++. ..+.++|+.|+||||+|+.+++...... +.+....++..+..
T Consensus 19 iGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~ 98 (363)
T PRK14961 19 IGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASR 98 (363)
T ss_pred cChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEeccccc
Confidence 6888889999999987654 4578999999999999999998762100 00111233333222
Q ss_pred cCccc---hhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccC
Q 038724 62 LKLET---SQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCF 121 (483)
Q Consensus 62 ~~~~~---~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L 121 (483)
....+ +...+ ...+++-++|+|+++... .+..+...+.......++|++|.+..-. +.++
T Consensus 99 ~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l 178 (363)
T PRK14961 99 TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKII 178 (363)
T ss_pred CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCC
Confidence 22222 22222 223566799999998664 2445555554444456677666543222 8899
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
+.++..+.+...+...+ ..-.++.++.|++.++|.|..+
T Consensus 179 ~~~el~~~L~~~~~~~g---~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 179 SEEKIFNFLKYILIKES---IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred CHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHH
Confidence 99999888887664433 1223456788999999988644
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=5.6e-09 Score=72.90 Aligned_cols=59 Identities=34% Similarity=0.456 Sum_probs=31.1
Q ss_pred cccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCC
Q 038724 319 HLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTS 377 (483)
Q Consensus 319 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 377 (483)
+|++|++++|.++.+++..|..+++|++|++++|.+....|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555555555555555555555554433334445555555555555543
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=1.3e-07 Score=89.91 Aligned_cols=157 Identities=11% Similarity=0.139 Sum_probs=107.9
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCCCEEEEEE-eCCCcCccchhHHh----
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFC---SERPGFDVVIWVV-VSKELKLETSQDDM---- 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~---~~~~~f~~~~~v~-~~~~~~~~~~~~~i---- 71 (483)
||-+..++.+.+++..+.. +.+.++|+.|+||||+|+.+++..- ....|+|...|.. -+......++.+-+
T Consensus 7 ~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~ 86 (313)
T PRK05564 7 IGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVN 86 (313)
T ss_pred cCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHh
Confidence 5788889999999987755 4668999999999999999998641 1235667666655 33444444433322
Q ss_pred --hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHHHHHHHHhc
Q 038724 72 --ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESWQVFQMKVG 135 (483)
Q Consensus 72 --~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~~l~~~~~~ 135 (483)
...+++-++|+|+++.. ..+..+...+.+...++.+|++|.+.... +.++++++....+.....
T Consensus 87 ~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~ 166 (313)
T PRK05564 87 KKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN 166 (313)
T ss_pred cCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc
Confidence 34456677778887544 44667777777667788888887665433 778888988877765432
Q ss_pred CCcccCCCCchhHHHHHHhHcCCchHHHH
Q 038724 136 NETLVSHPAIHKPAKMVAKDCGGLPLALT 164 (483)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~c~g~Plal~ 164 (483)
. ...+.++.++..++|.|.-+.
T Consensus 167 ~-------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 167 D-------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred C-------CCHHHHHHHHHHcCCCHHHHH
Confidence 1 113447788999999886554
No 51
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.77 E-value=1.8e-07 Score=89.75 Aligned_cols=158 Identities=9% Similarity=0.105 Sum_probs=99.1
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE-EEEEEeCCCcCccchhHHh---h----
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDV-VIWVVVSKELKLETSQDDM---I---- 72 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~~~v~~~~~~~~~~~~~~i---~---- 72 (483)
+|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++... ... +.. .+-+..+.......+...+ .
T Consensus 20 ~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~-~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (319)
T PRK00440 20 VGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY-GED-WRENFLELNASDERGIDVIRNKIKEFARTAP 97 (319)
T ss_pred cCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc-CCc-cccceEEeccccccchHHHHHHHHHHHhcCC
Confidence 58999999999999887777789999999999999999998762 111 211 1222222222222222222 1
Q ss_pred hc-CCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHHHHHHHHhcCC
Q 038724 73 LS-TKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESWQVFQMKVGNE 137 (483)
Q Consensus 73 l~-~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~~l~~~~~~~~ 137 (483)
.. ..+-++++|+++.... ...+...+......+++|+++....-. +.++++++....+...+...
T Consensus 98 ~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~ 177 (319)
T PRK00440 98 VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENE 177 (319)
T ss_pred CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHc
Confidence 11 3466899999865422 233333333333446677665332111 77899999888888777544
Q ss_pred cccCCCCchhHHHHHHhHcCCchHHH
Q 038724 138 TLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 138 ~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
.. .-..+..+.+++.++|.+.-+
T Consensus 178 ~~---~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 178 GI---EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CC---CCCHHHHHHHHHHcCCCHHHH
Confidence 31 223556888999999987654
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=1.4e-07 Score=97.86 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=106.8
Q ss_pred CCChhHHHHHHHHHhcCCeEE-EEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDVGI-IGLFGTGGVGKTTILKQINNRFCSERP------------------GFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~-v~i~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~~v~~~~~ 61 (483)
||-+..+..|.+++..++... +.++|+.|+||||+|+.+++....... .|.-++++.....
T Consensus 19 IGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~ 98 (944)
T PRK14949 19 VGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASR 98 (944)
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccc
Confidence 688889999999998876655 589999999999999999987722110 1111233433222
Q ss_pred cC---ccchhHHh---hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCCh-hhh-----------hccC
Q 038724 62 LK---LETSQDDM---ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHSE-EVC-----------VDCF 121 (483)
Q Consensus 62 ~~---~~~~~~~i---~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~-----------l~~L 121 (483)
.. ++++...+ ...+++-++|||+++.. .....++..+-......++|++|.+. .+. +.++
T Consensus 99 ~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpL 178 (944)
T PRK14949 99 TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSL 178 (944)
T ss_pred cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCC
Confidence 22 33333333 34577889999999765 34555555554444456666555443 222 8899
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
+.++..+.+.+....+. ..-..+..+.|++.++|.|.-+..+
T Consensus 179 s~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 179 TQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999998888764433 1233456888999999988654433
No 53
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=1.6e-09 Score=103.82 Aligned_cols=152 Identities=22% Similarity=0.213 Sum_probs=88.7
Q ss_pred ceEEEEccccccccccC------CCCC-CcccEEEecCCccccc----cchhhhcCCCccEEEccCCccCc----cCCcc
Q 038724 297 GLRRMSLMNNQIKTLLN------TPSC-PHLLTLFLNDNYLQDI----KNGFFQFMPCLKVLNLSYNRFLT----KLPSG 361 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~------~~~~-~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~----~~p~~ 361 (483)
.++.|++++|.++.... ...+ ++|+.|++++|.++.. ....+..+++|++|++++|.+.+ .++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 37777777776652110 1234 6777777777776621 12234555677777777776442 23334
Q ss_pred cccCcCCCEEeccCCCCCc-----cCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhc-----ccccccccee
Q 038724 362 ISKLVSLQHLDISFTSTLE-----LPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEML-----CLEQLNIIRL 431 (483)
Q Consensus 362 ~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~-----~l~~L~~L~l 431 (483)
+..+++|++|++++|.+.. ++..+..+++|++|++++|.+.. ..+..+. ..++|+.|++
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-----------~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD-----------AGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch-----------HHHHHHHHHHhccCCCceEEEc
Confidence 4455677777777776542 33345566777777777776432 1111111 2367788888
Q ss_pred eccCcc---------ccCCCCCcccccceeeeeeeee
Q 038724 432 TSCSLC---------SLCGLPTVQCLTSRRLNLEVED 459 (483)
Q Consensus 432 ~~~~l~---------~l~~l~~l~~l~l~~~~~~~~~ 459 (483)
++|.+. .+..++.|+.+++++|+++..+
T Consensus 258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 877763 3455567777777777766543
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=2.1e-09 Score=95.74 Aligned_cols=124 Identities=26% Similarity=0.268 Sum_probs=93.2
Q ss_pred CCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCccccCCcCCCEEec
Q 038724 317 CPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEELKALEKLKYLDM 396 (483)
Q Consensus 317 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 396 (483)
...|..+|||+|.++.+..+ ..-.|.+|+|++|+|++.. + +++..+.+|+.|||++|.+.++...-.+|-+.+.|.|
T Consensus 283 Wq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchhhhhhh-hhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 46788888888888887766 6677888888888886433 3 3478888888888888887777544456677888888
Q ss_pred CCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCc------cccCCCCCcccccceeeeee
Q 038724 397 DDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSL------CSLCGLPTVQCLTSRRLNLE 456 (483)
Q Consensus 397 ~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l------~~l~~l~~l~~l~l~~~~~~ 456 (483)
++|. ......++.|-+|..|++++|++ ..+.++|-|..+.+.+|-+.
T Consensus 360 a~N~-------------iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNK-------------IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhh-------------HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 8887 34556788888999999999986 34667777777777666544
No 55
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=2.2e-07 Score=94.43 Aligned_cols=162 Identities=13% Similarity=0.129 Sum_probs=103.7
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER------------------PGFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~~v~~~~~ 61 (483)
||.+..+..|..++..++. +.+.++|+.|+||||+|+.+++...... +.|.-++.+..+..
T Consensus 19 IGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~ 98 (709)
T PRK08691 19 VGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASN 98 (709)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEecccc
Confidence 6899999999999998764 4689999999999999999988641100 01111233443333
Q ss_pred cCcc---chhHHh---hhcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCChhhh------------hccC
Q 038724 62 LKLE---TSQDDM---ILSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCF 121 (483)
Q Consensus 62 ~~~~---~~~~~i---~l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L 121 (483)
.... ++.... ...+++-++|||+++.... ...+...+......+++|++|.+..-. +.++
T Consensus 99 ~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~L 178 (709)
T PRK08691 99 TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNM 178 (709)
T ss_pred CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCC
Confidence 3333 333222 2346778999999976532 334444443333345666655443221 7789
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTI 165 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 165 (483)
+.++....+.+.+..+.. .-..+..+.|++.++|.+.-+..
T Consensus 179 s~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhCCCHHHHHH
Confidence 999999888887755441 22345678999999998855543
No 56
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.73 E-value=1.6e-07 Score=91.91 Aligned_cols=163 Identities=12% Similarity=0.111 Sum_probs=92.3
Q ss_pred CCChhHHHHHHHHHhc----CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCC---CEEEEEEeCCCcCccchh-----
Q 038724 1 IENPKQFYQVWRFLVK----KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGF---DVVIWVVVSKELKLETSQ----- 68 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~----~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f---~~~~~v~~~~~~~~~~~~----- 68 (483)
+||++++++|..++.+ ...+.+.|+|++|+|||+++++++++........ -..+|+......+...++
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 97 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELAN 97 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999874 3446899999999999999999998752111111 134566544322211111
Q ss_pred --------------------HHh----hhcCCcEEEEEcCCCCcc-c----cccccCC--CCCCC-CCCEEEEecCChhh
Q 038724 69 --------------------DDM----ILSTKKFLLLLDDLWETI-D----LSKIGVP--LPSQK-IVSKVVFTTHSEEV 116 (483)
Q Consensus 69 --------------------~~i----~l~~~~~LlvlDdv~~~~-~----~~~l~~~--~~~~~-~gs~ilvTtR~~~~ 116 (483)
..+ .-.+++++||||+++... . +..+... ..... ....+|+++.....
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~ 177 (365)
T TIGR02928 98 QLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKF 177 (365)
T ss_pred HHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcch
Confidence 111 224668899999997662 1 1222211 11111 12233444432221
Q ss_pred -----------------hhccCChHHHHHHHHHHhcCC--cccCCCCchhHHHHHHhHcCCchHHH
Q 038724 117 -----------------CVDCFTPQESWQVFQMKVGNE--TLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 117 -----------------~l~~L~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
.+.+.+.++..+++...+... .....++..+.+..++..+.|.|..+
T Consensus 178 ~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 178 RENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred HhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 177889999999998776311 10111222234445666667887544
No 57
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.72 E-value=6.8e-09 Score=99.55 Aligned_cols=160 Identities=24% Similarity=0.244 Sum_probs=114.0
Q ss_pred ccccccceEEEEccccccccccCC--CCC---CcccEEEecCCcccccc----chhhhcC-CCccEEEccCCccCc----
Q 038724 291 DALKWLGLRRMSLMNNQIKTLLNT--PSC---PHLLTLFLNDNYLQDIK----NGFFQFM-PCLKVLNLSYNRFLT---- 356 (483)
Q Consensus 291 ~~~~~~~l~~l~l~~~~~~~~~~~--~~~---~~L~~L~l~~n~~~~~~----~~~~~~l-~~L~~L~l~~n~~~~---- 356 (483)
.+...++++.|++++|.+...... ..+ ++|++|++++|.+.... ...+..+ ++|+.|++++|.+.+
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 334577999999999988643221 112 56999999999876321 2224556 889999999997653
Q ss_pred cCCcccccCcCCCEEeccCCCCC-----ccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhcccccccccee
Q 038724 357 KLPSGISKLVSLQHLDISFTSTL-----ELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRL 431 (483)
Q Consensus 357 ~~p~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l 431 (483)
.++..+..+.+|++|++++|.+. .++..+..+++|++|++++|.+.... .......+..+++|+.|++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-------~~~l~~~~~~~~~L~~L~l 228 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG-------ASALAETLASLKSLEVLNL 228 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH-------HHHHHHHhcccCCCCEEec
Confidence 34445677789999999999876 34555666789999999999854220 1233455677899999999
Q ss_pred eccCccc-----c-C----CCCCcccccceeeeeee
Q 038724 432 TSCSLCS-----L-C----GLPTVQCLTSRRLNLEV 457 (483)
Q Consensus 432 ~~~~l~~-----l-~----~l~~l~~l~l~~~~~~~ 457 (483)
++|++.. + . ..+.|+.|+++++.++.
T Consensus 229 s~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~ 264 (319)
T cd00116 229 GDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264 (319)
T ss_pred CCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence 9998752 1 1 23789999999888863
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=2.6e-07 Score=92.60 Aligned_cols=160 Identities=15% Similarity=0.091 Sum_probs=103.0
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCCCCC------------------CEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSERPGF------------------DVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f------------------~~~~~v~~~~~ 61 (483)
||-+..++.|..++..+... .+.++|++|+||||+|+.+++.... .+.+ ..+.++..+..
T Consensus 17 vGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c-~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~ 95 (504)
T PRK14963 17 VGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPCGECESCLAVRRGAHPDVLEIDAASN 95 (504)
T ss_pred cChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc-cCCCCCCCCcChhhHHHhcCCCCceEEeccccc
Confidence 57788888898998887654 5699999999999999999887721 1111 11334443333
Q ss_pred cCc---cchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecC-Chhhh-----------hccC
Q 038724 62 LKL---ETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTH-SEEVC-----------VDCF 121 (483)
Q Consensus 62 ~~~---~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR-~~~~~-----------l~~L 121 (483)
... +++...+ ...+++-++|||+++... .+..+...+........+|++|. ...+. +.++
T Consensus 96 ~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~l 175 (504)
T PRK14963 96 NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRL 175 (504)
T ss_pred CCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCC
Confidence 222 2222222 234677799999997553 35555555544434455555443 33221 8899
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALT 164 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~ 164 (483)
+.++....+...+...+. .-..+..+.|++.++|.+.-+.
T Consensus 176 s~~el~~~L~~i~~~egi---~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGR---EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred CHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 999999999887754441 2235668899999999886553
No 59
>PF13173 AAA_14: AAA domain
Probab=98.70 E-value=1.8e-08 Score=82.33 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=67.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccc----hhHHh--hhcCCcEEEEEcCCCCcccccc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLET----SQDDM--ILSTKKFLLLLDDLWETIDLSK 93 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~----~~~~i--~l~~~~~LlvlDdv~~~~~~~~ 93 (483)
+++.|.|+.|+||||++++++++. . ....++|++..+...... +.+.+ ....+..+++||++.....|..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~ 78 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWED 78 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHH
Confidence 589999999999999999999877 2 335577887765544221 11222 1234788999999998888877
Q ss_pred ccCCCCCCCCCCEEEEecCChhhh
Q 038724 94 IGVPLPSQKIVSKVVFTTHSEEVC 117 (483)
Q Consensus 94 l~~~~~~~~~gs~ilvTtR~~~~~ 117 (483)
....+-+..+..+|++|+.+....
T Consensus 79 ~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 79 ALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred HHHHHHHhccCceEEEEccchHHH
Confidence 666665555568999998876553
No 60
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=3.3e-07 Score=90.67 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=106.2
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccC------------------CCCCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSE------------------RPGFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~------------------~~~f~~~~~v~~~~~ 61 (483)
||-+..++.+..++..++.. .+.++|+.|+||||+|+.+++..-.. .+.+.-++.++.+..
T Consensus 16 iGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~ 95 (491)
T PRK14964 16 VGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN 95 (491)
T ss_pred cCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC
Confidence 68888888898888877665 79999999999999999998743000 011122455565544
Q ss_pred cCccchhHHh------hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCC-hhhh-----------hccC
Q 038724 62 LKLETSQDDM------ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHS-EEVC-----------VDCF 121 (483)
Q Consensus 62 ~~~~~~~~~i------~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~-~~~~-----------l~~L 121 (483)
....++..-+ ...++.-++|+|+++... ....+...+.+..+.+++|++|.+ ..+. +.++
T Consensus 96 ~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l 175 (491)
T PRK14964 96 TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKI 175 (491)
T ss_pred CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccc
Confidence 4444433322 344677799999997553 355565555544455666665533 3332 7889
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALT 164 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~ 164 (483)
+.++..+.+...+..+.. .-.++..+.|++.++|.+..+.
T Consensus 176 ~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 176 PTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred cHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 999988888887765441 2234567889999999886443
No 61
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=1.4e-08 Score=70.83 Aligned_cols=59 Identities=32% Similarity=0.586 Sum_probs=45.9
Q ss_pred CCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCC
Q 038724 342 PCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQ 400 (483)
Q Consensus 342 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~ 400 (483)
++|++|++++|++....+..+..+++|++|++++|.+..+|+. +..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4688888888865444446778888888888888888888764 7888888888888886
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=4.5e-07 Score=90.50 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=103.8
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCCC---------CC-------------CEEEEEE
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSERP---------GF-------------DVVIWVV 57 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---------~f-------------~~~~~v~ 57 (483)
||-+..+..|..++..+.. +.+.++|+.|+||||+|+.+++....... .+ .-+..+.
T Consensus 24 iGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eid 103 (507)
T PRK06645 24 QGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEID 103 (507)
T ss_pred cCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEee
Confidence 5778888888887877654 57899999999999999999987621100 00 1122333
Q ss_pred eCCCcCccchhHHh------hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEE-ecCChhhh-----------
Q 038724 58 VSKELKLETSQDDM------ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVF-TTHSEEVC----------- 117 (483)
Q Consensus 58 ~~~~~~~~~~~~~i------~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-TtR~~~~~----------- 117 (483)
........++..-+ ...+++-++|+|+++.. ..+..+...+......+.+|+ ||+...+.
T Consensus 104 aas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~e 183 (507)
T PRK06645 104 AASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYD 183 (507)
T ss_pred ccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEE
Confidence 33333333333322 34567889999999865 335666655554444555554 54444332
Q ss_pred hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 118 VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 118 l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
+.+++.++....+...+..+.. .-..+..+.|++.++|.+..+
T Consensus 184 f~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 184 LRRLSFEEIFKLLEYITKQENL---KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred ccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 7889999999999888765441 223456788999999987554
No 63
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.68 E-value=2.4e-07 Score=94.18 Aligned_cols=198 Identities=19% Similarity=0.202 Sum_probs=126.8
Q ss_pred HHHHHHhcC-CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-ccchhHHh---------------
Q 038724 9 QVWRFLVKK-DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK-LETSQDDM--------------- 71 (483)
Q Consensus 9 ~l~~~l~~~-~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i--------------- 71 (483)
++...|.+. +.|++.|..|+|.||||++.+.+... ..-..+.|.+.+++.+ ...+.+-+
T Consensus 26 rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a 101 (894)
T COG2909 26 RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEA 101 (894)
T ss_pred HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHH
Confidence 344445444 67899999999999999999998743 2334589998775543 22222211
Q ss_pred -----------------------hhcCCcEEEEEcCCCCccc---cccccCCCCCCCCCCEEEEecCChhhh--------
Q 038724 72 -----------------------ILSTKKFLLLLDDLWETID---LSKIGVPLPSQKIVSKVVFTTHSEEVC-------- 117 (483)
Q Consensus 72 -----------------------~l~~~~~LlvlDdv~~~~~---~~~l~~~~~~~~~gs~ilvTtR~~~~~-------- 117 (483)
.--.+++.+||||..-..+ -..+...+.....+-.++||||+..-.
T Consensus 102 ~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr 181 (894)
T COG2909 102 QTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLR 181 (894)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeeh
Confidence 3346789999999864422 122222222333468899999998655
Q ss_pred ---------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 038724 118 ---------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMAYKKTPEEWKDAIEILMR 188 (483)
Q Consensus 118 ---------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~~w~~~~~~l~~ 188 (483)
.=.++.+|+.++|....+.. -....++.+.+...|.+-|+..++=.++...+.+.--..+.
T Consensus 182 ~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls---- 251 (894)
T COG2909 182 DELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS---- 251 (894)
T ss_pred hhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc----
Confidence 22478999999998766432 23455889999999999999999877773333322111110
Q ss_pred cccCCCChH-HHH-HhhhcccCCCCchhhhHHHhhhcCCCC
Q 038724 189 SALQFPGIN-KVY-YRLKFSFDRLPSDQIRSCFLFCSPFPG 227 (483)
Q Consensus 189 ~~~~~~~~~-~~~-~~l~~s~~~L~~~~~~~~~~~~a~fp~ 227 (483)
+.+ -+. -...--++.||+ +.|..++.+|+++.
T Consensus 252 ------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~ 285 (894)
T COG2909 252 ------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSR 285 (894)
T ss_pred ------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHH
Confidence 000 011 112234678999 79999999999865
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=3.7e-07 Score=89.35 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=102.4
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCCC-CC-----------------CEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSERP-GF-----------------DVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~f-----------------~~~~~v~~~~~ 61 (483)
||-+..+..|..++..+..+ .+.++|+.|+||||+|+.+++....... .+ ..++.+.....
T Consensus 21 VGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~ 100 (484)
T PRK14956 21 IHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASN 100 (484)
T ss_pred hChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhc
Confidence 57788888999999888754 5899999999999999999987621110 00 01122222222
Q ss_pred cC---ccchhHHh---hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEE-ecCChhhh-----------hccC
Q 038724 62 LK---LETSQDDM---ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVF-TTHSEEVC-----------VDCF 121 (483)
Q Consensus 62 ~~---~~~~~~~i---~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-TtR~~~~~-----------l~~L 121 (483)
.. ++++...+ ...++.-++|||+++.. ..+..++..+........+|. ||....+. +.++
T Consensus 101 ~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~l 180 (484)
T PRK14956 101 RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKV 180 (484)
T ss_pred ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCC
Confidence 22 23333333 34567779999999855 346666555544333455444 44433332 8889
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALT 164 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~ 164 (483)
+.++..+.+.+....++. .-..+..+.|++.++|.+.-..
T Consensus 181 s~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 181 PLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred CHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHHHHH
Confidence 999888888877654431 2235668889999999885443
No 65
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.68 E-value=1.6e-07 Score=86.09 Aligned_cols=145 Identities=14% Similarity=0.179 Sum_probs=95.3
Q ss_pred HHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC----CcCccchhHHh----hhcCCcEEE
Q 038724 9 QVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK----ELKLETSQDDM----ILSTKKFLL 80 (483)
Q Consensus 9 ~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~----~~~~~~~~~~i----~l~~~~~Ll 80 (483)
-|+.+++.+.++.+.+||++|+||||||+.++... +.+ ...||+.|- ..+.+.+.++- .+.++|..|
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~--SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTil 226 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKH--SYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTIL 226 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCC--ceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEE
Confidence 35667777889999999999999999999999876 222 144565543 33444444433 778999999
Q ss_pred EEcCCCC--ccccccccCCCCCCCCCCEEEE--ecCChhhh-------------hccCChHHHHHHHHHHhc---CCcc-
Q 038724 81 LLDDLWE--TIDLSKIGVPLPSQKIVSKVVF--TTHSEEVC-------------VDCFTPQESWQVFQMKVG---NETL- 139 (483)
Q Consensus 81 vlDdv~~--~~~~~~l~~~~~~~~~gs~ilv--TtR~~~~~-------------l~~L~~~~a~~l~~~~~~---~~~~- 139 (483)
++|.|.. ..+.+. .+|...+|..++| ||.++... ++.|..++...++.+... +...
T Consensus 227 FiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~ 303 (554)
T KOG2028|consen 227 FIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERP 303 (554)
T ss_pred EeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhcccccc
Confidence 9999963 334443 3455566787776 77766543 899999998888877432 1110
Q ss_pred -cCCCC-----chhHHHHHHhHcCCchH
Q 038724 140 -VSHPA-----IHKPAKMVAKDCGGLPL 161 (483)
Q Consensus 140 -~~~~~-----~~~~~~~i~~~c~g~Pl 161 (483)
...+. ...+.+-++..|+|-..
T Consensus 304 ~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 304 TDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred CCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 01111 12345667777877653
No 66
>PLN03150 hypothetical protein; Provisional
Probab=98.67 E-value=6.4e-08 Score=100.45 Aligned_cols=107 Identities=21% Similarity=0.323 Sum_probs=92.2
Q ss_pred ceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEecc
Q 038724 297 GLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDIS 374 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 374 (483)
.++.|+|++|.+++..+. ..+++|+.|+|++|.+.+..|..+..+++|++|+|++|++.+.+|..++.+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 378899999999865543 678999999999999987766669999999999999999999999999999999999999
Q ss_pred CCC-CCccCccccCC-cCCCEEecCCCCCcC
Q 038724 375 FTS-TLELPEELKAL-EKLKYLDMDDHQQVM 403 (483)
Q Consensus 375 ~~~-i~~lp~~~~~l-~~L~~L~l~~n~~~~ 403 (483)
+|. ...+|..++.+ .++..+++.+|....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 999 45899887654 577889999987543
No 67
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.66 E-value=3.5e-09 Score=97.80 Aligned_cols=140 Identities=20% Similarity=0.257 Sum_probs=109.5
Q ss_pred EEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccC-CCCC
Q 038724 301 MSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISF-TSTL 379 (483)
Q Consensus 301 l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~-~~i~ 379 (483)
++-++-.++.+|.. --++...+.|..|+|+.+|+..|+.+++||.||||+|.+...-|+.|..+.+|..|-+-+ |.|+
T Consensus 51 VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 34444455555542 124678899999999999999999999999999999998888899999999998887777 6799
Q ss_pred ccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc-----CCCCCccccccee
Q 038724 380 ELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL-----CGLPTVQCLTSRR 452 (483)
Q Consensus 380 ~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-----~~l~~l~~l~l~~ 452 (483)
++|.. |++|.+|+-|.+.-|++. -...+.|..|++|+.|.+..|.+..+ ..+..++.+.+..
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~-----------Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHIN-----------CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhc-----------chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc
Confidence 99987 899999999999988854 33445678888888888888876443 4455556655543
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=5e-07 Score=90.77 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=103.0
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER------------------PGFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~~v~~~~~ 61 (483)
||-+..+..+..++..++. +.+.++|+.|+||||+|+.+++...... +.|...+++.....
T Consensus 19 iGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~ 98 (546)
T PRK14957 19 AGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR 98 (546)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc
Confidence 6888889999999987655 4578999999999999999988652100 11222344443333
Q ss_pred cCc---cchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEE-ecCChhhh-----------hccC
Q 038724 62 LKL---ETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVF-TTHSEEVC-----------VDCF 121 (483)
Q Consensus 62 ~~~---~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilv-TtR~~~~~-----------l~~L 121 (483)
... +++...+ ...+++-++|+|+++... ..+.+...+......+.+|+ ||....+. +.++
T Consensus 99 ~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~L 178 (546)
T PRK14957 99 TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHI 178 (546)
T ss_pred cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCC
Confidence 332 2333333 345677899999997553 35555555544444555554 44332222 8889
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH-HHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL-ALTIV 166 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-al~~~ 166 (483)
+.++....+...+..++ ..-.....+.|++.++|.+. |+..+
T Consensus 179 s~~eI~~~L~~il~~eg---i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 179 SQADIKDQLKIILAKEN---INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99998888877664433 12334567889999999664 44444
No 69
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=4.9e-07 Score=90.85 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=104.5
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSER------------------PGFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~~v~~~~~ 61 (483)
||-+..++.|..++..+..+ .+.++|+.|+||||+|+.+++..-... +.+.-++.+..+..
T Consensus 19 vGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~ 98 (509)
T PRK14958 19 IGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASR 98 (509)
T ss_pred cCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccccc
Confidence 68888999999999887665 478999999999999999988762110 11222444554444
Q ss_pred cCccch---hHHh---hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCCh-hhh-----------hccC
Q 038724 62 LKLETS---QDDM---ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHSE-EVC-----------VDCF 121 (483)
Q Consensus 62 ~~~~~~---~~~i---~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~-----------l~~L 121 (483)
..+.++ ...+ ...++.-++|+|+|+.. .....+...+......+++|++|.+. .+. +.++
T Consensus 99 ~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l 178 (509)
T PRK14958 99 TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQL 178 (509)
T ss_pred CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCC
Confidence 444333 3322 34467789999999865 33555555554444456666554443 222 7888
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTI 165 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 165 (483)
+.++..+.+......++. .-..+..+.|++.++|.+..+..
T Consensus 179 ~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 179 PPLQIAAHCQHLLKEENV---EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred CHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 988888777766644431 22345577899999998865543
No 70
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=6.9e-09 Score=97.12 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=110.5
Q ss_pred ccccccceEEEEccccccccccCC---CCCCcccEEEecCCccccc-cchhhhcCCCccEEEccCCccCccCCcccccCc
Q 038724 291 DALKWLGLRRMSLMNNQIKTLLNT---PSCPHLLTLFLNDNYLQDI-KNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLV 366 (483)
Q Consensus 291 ~~~~~~~l~~l~l~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 366 (483)
.+..+++|+.|+++.|.+...... ..+++|..|.|+.|+++.- .......+|+|.+|+|.+|.....--....-+.
T Consensus 167 i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~ 246 (505)
T KOG3207|consen 167 IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ 246 (505)
T ss_pred HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh
Confidence 344677888899999887654432 3678899999999988743 233456789999999999854443333445577
Q ss_pred CCCEEeccCCCCCccCc--cccCCcCCCEEecCCCCCcCC--CCCCCCccchhhHhhhccccccccceeeccCccc----
Q 038724 367 SLQHLDISFTSTLELPE--ELKALEKLKYLDMDDHQQVME--EGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS---- 438 (483)
Q Consensus 367 ~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~n~~~~~--p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~---- 438 (483)
.|+.|||++|++...+. ..+.++.|..|+++.|.+..+ |+ ....+....+++|+.|+++.|++..
T Consensus 247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d-------~~s~~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPD-------VESLDKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCC-------ccchhhhcccccceeeecccCcccccccc
Confidence 89999999999888874 478899999999999987766 44 2222335678899999999998733
Q ss_pred --cCCCCCcccccceee
Q 038724 439 --LCGLPTVQCLTSRRL 453 (483)
Q Consensus 439 --l~~l~~l~~l~l~~~ 453 (483)
+..+++|++|.+..+
T Consensus 320 ~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLN 336 (505)
T ss_pred chhhccchhhhhhcccc
Confidence 333455555554333
No 71
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.64 E-value=7.8e-07 Score=86.64 Aligned_cols=163 Identities=12% Similarity=0.108 Sum_probs=103.8
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEeCC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER-------------------PGFDVVIWVVVSK 60 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~~v~~~~ 60 (483)
||.++.++.+.+++..+.. +.+.++|++|+|||++|+.+++...... .+++ ..++..+.
T Consensus 17 ig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~~~~ 95 (355)
T TIGR02397 17 IGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEIDAAS 95 (355)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEeeccc
Confidence 6899999999999987754 4678999999999999999987752110 1233 23443332
Q ss_pred CcC---ccchhHHh---hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCChhh-h-----------hcc
Q 038724 61 ELK---LETSQDDM---ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHSEEV-C-----------VDC 120 (483)
Q Consensus 61 ~~~---~~~~~~~i---~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~~-~-----------l~~ 120 (483)
... .+++...+ ...+++-++|+|+++.. .....+...+......+.+|++|.+..- . +.+
T Consensus 96 ~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 175 (355)
T TIGR02397 96 NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKR 175 (355)
T ss_pred cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCC
Confidence 222 23344433 33456668999998655 3344454455443445666666654432 1 677
Q ss_pred CChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHH
Q 038724 121 FTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 121 L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 167 (483)
+++++..+.+...+..... .-..+.+..+++.++|.|..+....
T Consensus 176 ~~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 176 IPLEDIVERLKKILDKEGI---KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 8888888888776644331 1224667888999999886654443
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=1.5e-08 Score=100.16 Aligned_cols=159 Identities=26% Similarity=0.353 Sum_probs=111.9
Q ss_pred cceEEEEccccccccccCCCCCC--cccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 296 LGLRRMSLMNNQIKTLLNTPSCP--HLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
+.+..+++.+|.++.+++..... +|+.|++++|.+..++.. +..+++|+.|++++|+ +..+|...+.+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCch-hhhhhhhhhhhhhhhheec
Confidence 56788888888888888765443 899999999988887533 6788889999999986 6777766668888899999
Q ss_pred cCCCCCccCccccCCcCCCEEecCCCCCcCCCC-CCCCc----------cchhhHhhhccccccccceeeccCcccc---
Q 038724 374 SFTSTLELPEELKALEKLKYLDMDDHQQVMEEG-NCQSD----------DAESLLKEMLCLEQLNIIRLTSCSLCSL--- 439 (483)
Q Consensus 374 ~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~-~~~l~----------~~~~~~~~l~~l~~L~~L~l~~~~l~~l--- 439 (483)
++|.+..+|..+..+..|+.|.+++|.....+. +..+. .....+..++.+++|+.|++++|.+..+
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~ 273 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSL 273 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccccc
Confidence 999998888877666778889888886444422 22111 0111135566677777777777776544
Q ss_pred CCCCCcccccceeeeee
Q 038724 440 CGLPTVQCLTSRRLNLE 456 (483)
Q Consensus 440 ~~l~~l~~l~l~~~~~~ 456 (483)
..+.+++.|+++.+.+.
T Consensus 274 ~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 274 GSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccCccCEEeccCcccc
Confidence 34555666666555443
No 73
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.64 E-value=5.3e-07 Score=79.07 Aligned_cols=143 Identities=16% Similarity=0.156 Sum_probs=90.0
Q ss_pred HHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEeC-CCcCccch
Q 038724 9 QVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER-------------------PGFDVVIWVVVS-KELKLETS 67 (483)
Q Consensus 9 ~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~~v~~~-~~~~~~~~ 67 (483)
.+.+.+..+.. ..+.++|+.|+|||++|+.+++...... .+.+. .++... .......+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 46667766655 5789999999999999999988762110 22232 233222 22333333
Q ss_pred ---hHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHH
Q 038724 68 ---QDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESW 127 (483)
Q Consensus 68 ---~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~ 127 (483)
...+ ...+.+-++|+||++... ..+.+...+....+.+.+|++|++..-. +.+++.++..
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~ 161 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALL 161 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHH
Confidence 2222 234677789999997653 3445555554444456666666544221 8889999988
Q ss_pred HHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH
Q 038724 128 QVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL 161 (483)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 161 (483)
+.+.+. + -..+.++.+++.++|.|.
T Consensus 162 ~~l~~~-g--------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 162 QWLIRQ-G--------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHHc-C--------CCHHHHHHHHHHcCCCcc
Confidence 888776 1 114568899999999885
No 74
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=7.5e-07 Score=87.44 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=101.7
Q ss_pred CCChhHHHHHHHHHhcCCeEE-EEEEcCCCCcHHHHHHHHHhhcccCC---------------------------CCCCE
Q 038724 1 IENPKQFYQVWRFLVKKDVGI-IGLFGTGGVGKTTILKQINNRFCSER---------------------------PGFDV 52 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~-v~i~G~~GiGKTtLa~~~~~~~~~~~---------------------------~~f~~ 52 (483)
||.+..++.|.+++.++..+. +.++|+.|+||||+|..+++...... .+++.
T Consensus 19 iGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~ 98 (397)
T PRK14955 19 TAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNI 98 (397)
T ss_pred cChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCe
Confidence 588888999999999877654 88999999999999999988762110 01221
Q ss_pred EEEEEeCCCcC---ccchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEec-CChhhh------
Q 038724 53 VIWVVVSKELK---LETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTT-HSEEVC------ 117 (483)
Q Consensus 53 ~~~v~~~~~~~---~~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-R~~~~~------ 117 (483)
..+..+.... ++++.+.+ ...+.+-++|+|+++... .+..+...+.+....+.+|++| +...+.
T Consensus 99 -~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR 177 (397)
T PRK14955 99 -SEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR 177 (397)
T ss_pred -EeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHH
Confidence 1222222222 22333333 334566788999997653 3555555555444456665554 333222
Q ss_pred -----hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHH
Q 038724 118 -----VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTI 165 (483)
Q Consensus 118 -----l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 165 (483)
+.++++++..+.+...+.... ..-..+.++.+++.++|.+.-+..
T Consensus 178 ~~~v~f~~l~~~ei~~~l~~~~~~~g---~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 178 CQRFNFKRIPLEEIQQQLQGICEAEG---ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 778999888888877664332 123356688999999998754433
No 75
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=6.5e-07 Score=90.10 Aligned_cols=163 Identities=13% Similarity=0.120 Sum_probs=100.7
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEeCC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER-------------------PGFDVVIWVVVSK 60 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~~v~~~~ 60 (483)
||++..++.+.+++..+.. +.+.++|+.|+||||+|+.+++...... .+.+ ..++..+.
T Consensus 19 IGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D-iieIdaas 97 (605)
T PRK05896 19 IGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD-IVELDAAS 97 (605)
T ss_pred cCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc-eEEecccc
Confidence 6999999999999987654 4688999999999999999988762100 0112 23444332
Q ss_pred CcCcc---chhHHh---hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCCh-hhh-----------hcc
Q 038724 61 ELKLE---TSQDDM---ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHSE-EVC-----------VDC 120 (483)
Q Consensus 61 ~~~~~---~~~~~i---~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~-----------l~~ 120 (483)
..... ++...+ ...+++-++|+|+++.. .....+...+........+|++|... .+. +.+
T Consensus 98 ~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~ 177 (605)
T PRK05896 98 NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKK 177 (605)
T ss_pred ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCC
Confidence 23322 333222 23345557999999764 33445555444333345555444332 221 788
Q ss_pred CChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH-HHHHHH
Q 038724 121 FTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL-ALTIVG 167 (483)
Q Consensus 121 L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-al~~~~ 167 (483)
+++++....+...+...+. .-..+.++.+++.++|.+. |+..+-
T Consensus 178 Ls~~eL~~~L~~il~kegi---~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 178 LNNSELQELLKSIAKKEKI---KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999988888877644331 2224567889999999765 444333
No 76
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=9.3e-07 Score=89.47 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=101.6
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSER------------------PGFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~~v~~~~~ 61 (483)
||-+..+..+..++..+..+ .+.++|+.|+||||+|+.+++...... +.|.-.+++..+..
T Consensus 19 vGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~ 98 (527)
T PRK14969 19 VGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASN 98 (527)
T ss_pred cCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeecccc
Confidence 68888899999999887654 568999999999999999987762110 11222344443333
Q ss_pred cCccc---hhHHh---hhcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCCh-hhh-----------hccC
Q 038724 62 LKLET---SQDDM---ILSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSE-EVC-----------VDCF 121 (483)
Q Consensus 62 ~~~~~---~~~~i---~l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~-~~~-----------l~~L 121 (483)
....+ +.... ...+++-++|+|+++.... ...+...+......+.+|++|.+. .+. +.++
T Consensus 99 ~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l 178 (527)
T PRK14969 99 TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (527)
T ss_pred CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCC
Confidence 33332 22222 3356778999999986643 444555554433445555544333 221 8889
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
+.++..+.+.+....++. .-..+..+.|++.++|.+.-+
T Consensus 179 ~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 179 PPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred CHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 999988888776644331 223455788999999987533
No 77
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.61 E-value=2.4e-07 Score=83.27 Aligned_cols=156 Identities=11% Similarity=0.098 Sum_probs=105.1
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEE-EEEEeCCCcCccchhHHh----hh--
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVV-IWVVVSKELKLETSQDDM----IL-- 73 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~-~~v~~~~~~~~~~~~~~i----~l-- 73 (483)
+|-+..+..|...+.....++..++||+|.|||+.|.++++.. .-..-|.++ +-.++|......-+...+ .+
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~ 117 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKIKNFAKLTV 117 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhhcCHHHHhh
Confidence 3567778888888888778899999999999999999999887 334456553 334566555444333333 11
Q ss_pred ---------cCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCCh------------hhhhccCChHHHHHHH
Q 038724 74 ---------STKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHSE------------EVCVDCFTPQESWQVF 130 (483)
Q Consensus 74 ---------~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~------------~~~l~~L~~~~a~~l~ 130 (483)
...--.+|||+++.. +.|.++..........++.++-+... ....++|.+++...-+
T Consensus 118 ~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL 197 (346)
T KOG0989|consen 118 LLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRL 197 (346)
T ss_pred ccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHH
Confidence 112258899999876 34776665555444445444333222 2228899999999999
Q ss_pred HHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 131 QMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
...+..+.. .-..+..+.|++.++|-=
T Consensus 198 ~~Ia~~E~v---~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 198 EKIASKEGV---DIDDDALKLIAKISDGDL 224 (346)
T ss_pred HHHHHHhCC---CCCHHHHHHHHHHcCCcH
Confidence 888876652 333566888999998743
No 78
>PRK08727 hypothetical protein; Validated
Probab=98.60 E-value=3.2e-07 Score=83.14 Aligned_cols=150 Identities=10% Similarity=0.003 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcCCcEEEEEcCC
Q 038724 6 QFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILSTKKFLLLLDDL 85 (483)
Q Consensus 6 ~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~~~~LlvlDdv 85 (483)
.++.+...........+.|+|++|+|||.|+.++++... .....+.|+++.+... .+...+..-.+.-+|||||+
T Consensus 28 ~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~~~~--~~~~~~~~l~~~dlLiIDDi 102 (233)
T PRK08727 28 LLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQAAAG--RLRDALEALEGRSLVALDGL 102 (233)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHHhhh--hHHHHHHHHhcCCEEEEeCc
Confidence 344444444333445799999999999999999988762 2233466776544221 11112211234458999999
Q ss_pred CCccc---cc-cccCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCcccC
Q 038724 86 WETID---LS-KIGVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNETLVS 141 (483)
Q Consensus 86 ~~~~~---~~-~l~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~~~~ 141 (483)
..... +. .+...+.. ..+|..+|+|++...-. +++++.++-.+++.+.+....
T Consensus 103 ~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~--- 179 (233)
T PRK08727 103 ESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG--- 179 (233)
T ss_pred ccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC---
Confidence 74421 11 12221111 12356799998854332 677788888888877554332
Q ss_pred CCCchhHHHHHHhHcCCchHHH
Q 038724 142 HPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 142 ~~~~~~~~~~i~~~c~g~Plal 163 (483)
..-..+....|++.+.|-...+
T Consensus 180 l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 180 LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCCCHHHHHHHHHhCCCCHHHH
Confidence 1233455677777776554433
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=6.8e-07 Score=91.23 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=104.0
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSER------------------PGFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~~v~~~~~ 61 (483)
||-+..+..|...+..+... .+.++|+.|+||||+|+.+++...... +.|.-.+.+.....
T Consensus 19 vGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~ 98 (647)
T PRK07994 19 VGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASR 98 (647)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeeccccc
Confidence 68888899999999887654 468999999999999999988762111 01111233433322
Q ss_pred cC---ccchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCC-hhhh-----------hccC
Q 038724 62 LK---LETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHS-EEVC-----------VDCF 121 (483)
Q Consensus 62 ~~---~~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~-~~~~-----------l~~L 121 (483)
.. ++++...+ ...+++-++|||+++... ....++..+-......++|++|.+ ..+. +.++
T Consensus 99 ~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~L 178 (647)
T PRK07994 99 TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 (647)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCC
Confidence 22 33333333 345788899999998653 355555555443334555544433 3332 8899
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
+.++..+.+......+. ........+.|++.++|.+..+..+
T Consensus 179 s~~ei~~~L~~il~~e~---i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 179 DVEQIRQQLEHILQAEQ---IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999988887764333 1223456778999999988644433
No 80
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=1.1e-06 Score=85.24 Aligned_cols=155 Identities=9% Similarity=-0.004 Sum_probs=97.1
Q ss_pred CCChhHHHHHHHHHhcCC----------eEEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCE
Q 038724 1 IENPKQFYQVWRFLVKKD----------VGIIGLFGTGGVGKTTILKQINNRFCSER------------------PGFDV 52 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~----------~~~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~ 52 (483)
||-+..++.|.+++..+. .+-+.++|++|+|||++|..+++..-... .|.|
T Consensus 8 iGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD- 86 (394)
T PRK07940 8 VGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPD- 86 (394)
T ss_pred cChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 577888999999998753 45688999999999999999987541110 1222
Q ss_pred EEEEEeC-CCcCc---cchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhh-h-----
Q 038724 53 VIWVVVS-KELKL---ETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEV-C----- 117 (483)
Q Consensus 53 ~~~v~~~-~~~~~---~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~-~----- 117 (483)
+.++... ..... +++.+.+ ...+++-++|+|+++... ....+...+.....+..+|++|.+..- .
T Consensus 87 ~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrS 166 (394)
T PRK07940 87 VRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRS 166 (394)
T ss_pred EEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHh
Confidence 2233222 22222 2333333 234666788999998653 234454444444445656665555422 2
Q ss_pred ------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHH
Q 038724 118 ------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALT 164 (483)
Q Consensus 118 ------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~ 164 (483)
+.+++.++..+.+....+ -..+.++.++..++|.|....
T Consensus 167 Rc~~i~f~~~~~~~i~~~L~~~~~--------~~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 167 RCRHVALRTPSVEAVAEVLVRRDG--------VDPETARRAARASQGHIGRAR 211 (394)
T ss_pred hCeEEECCCCCHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHH
Confidence 888999998888864321 113557789999999996543
No 81
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=9.5e-07 Score=90.00 Aligned_cols=163 Identities=13% Similarity=0.167 Sum_probs=104.5
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC-----------------------CCCCEEEEE
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER-----------------------PGFDVVIWV 56 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~-----------------------~~f~~~~~v 56 (483)
||-+..+..|.+++..++. ..+.++|+.|+||||+|+.+++..-... +.+.-.+++
T Consensus 19 iGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~el 98 (618)
T PRK14951 19 VGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTEL 98 (618)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeec
Confidence 6888889999999988765 4568999999999999999977651100 011113344
Q ss_pred EeCCCcCccch---hHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCC-hhhh----------
Q 038724 57 VVSKELKLETS---QDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHS-EEVC---------- 117 (483)
Q Consensus 57 ~~~~~~~~~~~---~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~-~~~~---------- 117 (483)
..+....+.++ .... ...++.-++|||+|+... .+..+...+.+.....++|++|.+ ..+.
T Consensus 99 daas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~ 178 (618)
T PRK14951 99 DAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQF 178 (618)
T ss_pred CcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceee
Confidence 43333333333 3222 234667799999998653 355566555544445556655433 2222
Q ss_pred -hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 118 -VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 118 -l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
+++++.++..+.+...+..++. .-..+..+.|++.++|.+..+..+
T Consensus 179 ~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 179 NLRPMAPETVLEHLTQVLAAENV---PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 8899999999888887755441 223456788999999977555433
No 82
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=1.5e-09 Score=107.32 Aligned_cols=131 Identities=26% Similarity=0.337 Sum_probs=105.9
Q ss_pred cccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 294 KWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
.|..|...+.+.|.+..+... .-++.|++|+|+.|+++... .+..++.|+.|||++|. +..+|.--..-..|+.|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeee
Confidence 466777888888888766543 45688999999999998887 38899999999999996 777774322223499999
Q ss_pred ccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc
Q 038724 373 ISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS 438 (483)
Q Consensus 373 l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 438 (483)
+++|.++++ .++.+|++|+.||++.|-+. .......+..|.+|+.|+|.||++.+
T Consensus 239 lrnN~l~tL-~gie~LksL~~LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALTTL-RGIENLKSLYGLDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHHhh-hhHHhhhhhhccchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999999998 46999999999999999865 34455667889999999999999854
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.3e-06 Score=86.98 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=102.0
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSERP------------------GFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~~v~~~~~ 61 (483)
||.+..+..|...+..+.. +.+.++|++|+||||+|+.+++....... .+.....+..+..
T Consensus 17 vGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~ 96 (472)
T PRK14962 17 VGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASN 96 (472)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc
Confidence 6888888888888888766 45899999999999999999887621110 0112333444333
Q ss_pred cCccchh---HHh---hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCC-hhhh-----------hccC
Q 038724 62 LKLETSQ---DDM---ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHS-EEVC-----------VDCF 121 (483)
Q Consensus 62 ~~~~~~~---~~i---~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~-~~~~-----------l~~L 121 (483)
....++. ... ...+++-++|+|+++.. ...+.+...+........++++|.+ ..+. +.++
T Consensus 97 ~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l 176 (472)
T PRK14962 97 RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNI 176 (472)
T ss_pred CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCc
Confidence 3333222 222 23456779999999754 2344455555433333444444433 2221 7889
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCC-chHHHHHHHHHh
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGG-LPLALTIVGRAM 170 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plal~~~~~~l 170 (483)
+.++....+...+..... .-.++..+.|++.++| .+.++..+....
T Consensus 177 ~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 177 SDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred cHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999988888877644331 2234567788887764 566666665433
No 84
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.55 E-value=5.3e-07 Score=77.69 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=74.1
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh---------
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM--------- 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i--------- 71 (483)
||-++.++++.-...+++.+-+.|.||+|+||||-+..+++.. -...+-++++=..+|++...+-+.+.|
T Consensus 30 VGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~ 108 (333)
T KOG0991|consen 30 VGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVT 108 (333)
T ss_pred hCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccccHHHHHHHHHHHHhhcc
Confidence 7899999999999999999999999999999999999999887 333355777788899998888888887
Q ss_pred hhcCCcEEEEEcCCCCccc
Q 038724 72 ILSTKKFLLLLDDLWETID 90 (483)
Q Consensus 72 ~l~~~~~LlvlDdv~~~~~ 90 (483)
.-.++--.+|||.+++...
T Consensus 109 lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 109 LPPGRHKIIILDEADSMTA 127 (333)
T ss_pred CCCCceeEEEeeccchhhh
Confidence 2346777899999988743
No 85
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1.4e-06 Score=88.97 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=105.2
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCC--C--C-------------------CCEEEEE
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSER--P--G-------------------FDVVIWV 56 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~--~--~-------------------f~~~~~v 56 (483)
||.+..++.|..++..++.. .+.++|+.|+||||+|+.+++..-... . . ..-++++
T Consensus 27 iGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~ 106 (598)
T PRK09111 27 IGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEM 106 (598)
T ss_pred cCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEe
Confidence 68899999999999887654 689999999999999999988662110 0 0 0012344
Q ss_pred EeCCCcCccc---hhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEec-CChhhh----------
Q 038724 57 VVSKELKLET---SQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTT-HSEEVC---------- 117 (483)
Q Consensus 57 ~~~~~~~~~~---~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-R~~~~~---------- 117 (483)
.......+.+ +...+ ...+++-++|+|+++... ....+...+.+....+++|++| ....+.
T Consensus 107 ~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~ 186 (598)
T PRK09111 107 DAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRF 186 (598)
T ss_pred cccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEE
Confidence 3333333333 33222 344567789999997653 3555555554444456665544 333322
Q ss_pred -hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHH
Q 038724 118 -VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 118 -l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 167 (483)
+..++.++....+...+..+.. .-..+..+.|++.++|.+..+...-
T Consensus 187 ~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 187 DLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred EecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7789999988888887754431 2234667889999999886654433
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.54 E-value=7e-07 Score=93.01 Aligned_cols=154 Identities=17% Similarity=0.182 Sum_probs=93.7
Q ss_pred CCChhHHH---HHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC--CCcCccchhHHh----
Q 038724 1 IENPKQFY---QVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVS--KELKLETSQDDM---- 71 (483)
Q Consensus 1 vgr~~~~~---~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~--~~~~~~~~~~~i---- 71 (483)
||.+..+. .+.+.+..+..+.+.|+|++|+||||+|+.+++.. ...|.. +... ...+.++.....
T Consensus 31 vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~---lna~~~~i~dir~~i~~a~~~l 104 (725)
T PRK13341 31 VGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFSS---LNAVLAGVKDLRAEVDRAKERL 104 (725)
T ss_pred cCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCccee---ehhhhhhhHHHHHHHHHHHHHh
Confidence 57777664 57777777777788999999999999999999876 344421 1111 111122222222
Q ss_pred hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEE--ecCChhh-------------hhccCChHHHHHHHHHHh
Q 038724 72 ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVF--TTHSEEV-------------CVDCFTPQESWQVFQMKV 134 (483)
Q Consensus 72 ~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilv--TtR~~~~-------------~l~~L~~~~a~~l~~~~~ 134 (483)
...+++.++||||++.- .+.+.+...+. .|+.+++ ||.+... .+++++.++...++....
T Consensus 105 ~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 105 ERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred hhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHH
Confidence 23356789999999744 33444443332 3455555 3444321 188999999999998766
Q ss_pred cCCc----ccCCCCchhHHHHHHhHcCCchHHH
Q 038724 135 GNET----LVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 135 ~~~~----~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
.... .....-.++..+.|++.+.|.-..+
T Consensus 182 ~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 182 QDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred HHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 4110 0111223456788888888865443
No 87
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.2e-06 Score=84.26 Aligned_cols=159 Identities=11% Similarity=0.065 Sum_probs=98.6
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCC-CC---------------------------CC
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSER-PG---------------------------FD 51 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~---------------------------f~ 51 (483)
||.++..+.+.+.+..++.+ .+.++|+.|+||+++|.++++..-... .. ..
T Consensus 22 iGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HP 101 (365)
T PRK07471 22 FGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHG 101 (365)
T ss_pred cChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCC
Confidence 58888889999999988655 588999999999999999887652110 00 01
Q ss_pred EEEEEEeC--CC-------cCccch---hHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCCh
Q 038724 52 VVIWVVVS--KE-------LKLETS---QDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSE 114 (483)
Q Consensus 52 ~~~~v~~~--~~-------~~~~~~---~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~ 114 (483)
-..|+.-. +. ..+.++ ...+ ...+++.++|||+++... ....+...+.....++.+|++|.+.
T Consensus 102 Dl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 102 GLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 12333221 11 111221 1111 334677899999997553 3444444444433456566666554
Q ss_pred hhh------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 115 EVC------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 115 ~~~------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
... +.+++.++..+.+....... .....+.++..++|.|+....+
T Consensus 182 ~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-------~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 182 ARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-------PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred hhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 322 88999999999998754221 1222367899999999865444
No 88
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=3.4e-08 Score=97.66 Aligned_cols=130 Identities=26% Similarity=0.374 Sum_probs=73.5
Q ss_pred cccceEEEEccccccccccCCC-CCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 294 KWLGLRRMSLMNNQIKTLLNTP-SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
.++.++.|+++.|.++.++... ..++|+.|++++|.+..+++. .....+|.+|.+++|+ ....+..+..+.++..+.
T Consensus 161 ~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 161 NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred ccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence 3444555555555555554443 455555555555555555443 1233335555555553 333344455555555555
Q ss_pred ccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc
Q 038724 373 ISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS 438 (483)
Q Consensus 373 l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 438 (483)
+.+|++..+|..++.+++++.|++++|.+.. ...+..+.+|+.|+++++.+..
T Consensus 239 l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~-------------i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 239 LSNNKLEDLPESIGNLSNLETLDLSNNQISS-------------ISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cCCceeeeccchhccccccceeccccccccc-------------cccccccCccCEEeccCccccc
Confidence 5555555555556666666666666666432 2237889999999999998643
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.52 E-value=6.7e-07 Score=81.15 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=90.8
Q ss_pred hHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-ccchhHHhhhcCCcEEEEEc
Q 038724 5 KQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK-LETSQDDMILSTKKFLLLLD 83 (483)
Q Consensus 5 ~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~l~~~~~LlvlD 83 (483)
..+..+.++......+.+.|+|++|+|||+|+.++++... .....+.|+++..... ..++.+.+. +.-+++||
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~~~~~~~~~~~---~~dlliiD 104 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAWFVPEVLEGME---QLSLVCID 104 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhhhhHHHHHHhh---hCCEEEEe
Confidence 3455666665555557899999999999999999998762 2234466776654221 112222221 12478999
Q ss_pred CCCCc---ccccc-ccCCCCC-CCCC-CEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCc
Q 038724 84 DLWET---IDLSK-IGVPLPS-QKIV-SKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNET 138 (483)
Q Consensus 84 dv~~~---~~~~~-l~~~~~~-~~~g-s~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~ 138 (483)
|+... ..|+. +...+.. ...| .++|+||+..... ++++++++-.+++.+.+....
T Consensus 105 di~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~ 184 (235)
T PRK08084 105 NIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG 184 (235)
T ss_pred ChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC
Confidence 99653 22221 1111111 1123 4788888755332 777888888888776554332
Q ss_pred ccCCCCchhHHHHHHhHcCCchHHHHHHH
Q 038724 139 LVSHPAIHKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 139 ~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 167 (483)
..-.++..+.|++.+.|....+..+-
T Consensus 185 ---~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 185 ---FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred ---CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 23335667778888877665554333
No 90
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=1.7e-06 Score=91.29 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=102.3
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCC---------------------CCCCEEEEEEe
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSER---------------------PGFDVVIWVVV 58 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~---------------------~~f~~~~~v~~ 58 (483)
||.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++.+.... .+++ ++++..
T Consensus 18 iGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~eida 96 (824)
T PRK07764 18 IGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTEIDA 96 (824)
T ss_pred cCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEEecc
Confidence 68888999999999987665 478999999999999999988772111 1222 234433
Q ss_pred CCCcCc---cchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEec-CChhhh-----------h
Q 038724 59 SKELKL---ETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTT-HSEEVC-----------V 118 (483)
Q Consensus 59 ~~~~~~---~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-R~~~~~-----------l 118 (483)
.....+ +++...+ ...++.-++|||+++... ....|+..+.+....+.+|++| ....+. +
T Consensus 97 as~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F 176 (824)
T PRK07764 97 ASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPF 176 (824)
T ss_pred cccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEe
Confidence 222222 3333333 345677789999998663 3555655665544455555544 333332 7
Q ss_pred ccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 119 DCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 119 ~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
..++.++..+.+.+....+.. .-..+....|++.++|.+..+
T Consensus 177 ~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 177 RLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred eCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 788888888888776644331 223445678999999988544
No 91
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.4e-06 Score=83.43 Aligned_cols=160 Identities=11% Similarity=0.134 Sum_probs=96.4
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhccc-----CCCCCCE-EEEEEeCCCcC---ccchhHH
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCS-----ERPGFDV-VIWVVVSKELK---LETSQDD 70 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~-----~~~~f~~-~~~v~~~~~~~---~~~~~~~ 70 (483)
||.+..++.+.+++..+.. +.+.++|++|+|||++|+.+++.... ....|.. ++-+......+ +.++..+
T Consensus 20 ig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~ 99 (367)
T PRK14970 20 VGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQ 99 (367)
T ss_pred CCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHH
Confidence 6889999999999988754 47889999999999999999887621 0112222 12222222222 2222332
Q ss_pred h---hhcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCCh-hhh-----------hccCChHHHHHHHHHH
Q 038724 71 M---ILSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSE-EVC-----------VDCFTPQESWQVFQMK 133 (483)
Q Consensus 71 i---~l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~-~~~-----------l~~L~~~~a~~l~~~~ 133 (483)
. ...+++-++|+|+++.... +..+...+......+.+|++|... ... ++++++++....+...
T Consensus 100 ~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~ 179 (367)
T PRK14970 100 VRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGI 179 (367)
T ss_pred HhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHH
Confidence 2 2335566899999975432 444443333323345555544322 111 6778888888888776
Q ss_pred hcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 134 VGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
+...+. .-..+.++.+++.++|.+..+
T Consensus 180 ~~~~g~---~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 180 AVKEGI---KFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHcCC---CCCHHHHHHHHHhCCCCHHHH
Confidence 654431 123466788888898866533
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.49 E-value=1.6e-06 Score=78.66 Aligned_cols=153 Identities=8% Similarity=0.052 Sum_probs=85.3
Q ss_pred HHHHHHHHHhc-CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcCCcEEEEEcC
Q 038724 6 QFYQVWRFLVK-KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILSTKKFLLLLDD 84 (483)
Q Consensus 6 ~~~~l~~~l~~-~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~~~~LlvlDd 84 (483)
.+..+.++... ...+.+.|+|++|+|||+||.++++... ..-....+++...... .+......-++|+||
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~---~~~~~~~~i~~~~~~~------~~~~~~~~~~liiDd 98 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS---YGGRNARYLDAASPLL------AFDFDPEAELYAVDD 98 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEehHHhHH------HHhhcccCCEEEEeC
Confidence 34455555442 3446899999999999999999998762 1122345665543221 112223345788999
Q ss_pred CCCccc--cccccCCCCC-CCCCC-EEEEecCChhhh------------------hccCChHHHHHHHHHHhcCCcccCC
Q 038724 85 LWETID--LSKIGVPLPS-QKIVS-KVVFTTHSEEVC------------------VDCFTPQESWQVFQMKVGNETLVSH 142 (483)
Q Consensus 85 v~~~~~--~~~l~~~~~~-~~~gs-~ilvTtR~~~~~------------------l~~L~~~~a~~l~~~~~~~~~~~~~ 142 (483)
++.... ...+...+.. ...+. .+++|++..... +.++++++-.+++.+...... .
T Consensus 99 i~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~---v 175 (227)
T PRK08903 99 VERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG---L 175 (227)
T ss_pred hhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC---C
Confidence 975422 2222222221 11233 466666532211 777777776666665443222 1
Q ss_pred CCchhHHHHHHhHcCCchHHHHHHHHHh
Q 038724 143 PAIHKPAKMVAKDCGGLPLALTIVGRAM 170 (483)
Q Consensus 143 ~~~~~~~~~i~~~c~g~Plal~~~~~~l 170 (483)
.-.++..+.+++.+.|++..+..+-..+
T Consensus 176 ~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 176 QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2234566777777888887776555443
No 93
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3.1e-06 Score=85.77 Aligned_cols=166 Identities=13% Similarity=0.145 Sum_probs=104.6
Q ss_pred CCChhHHHHHHHHHhcCC-eEEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEeCC
Q 038724 1 IENPKQFYQVWRFLVKKD-VGIIGLFGTGGVGKTTILKQINNRFCSER-------------------PGFDVVIWVVVSK 60 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~-~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~~v~~~~ 60 (483)
||-+..++.|.+++..+. ...+.++|+.|+||||+|+.+++...... .|.+ ++++....
T Consensus 19 iGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpD-v~eId~a~ 97 (624)
T PRK14959 19 AGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVD-VVEIDGAS 97 (624)
T ss_pred cCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCc-eEEEeccc
Confidence 577788888888888765 46788999999999999999998772110 0111 33443332
Q ss_pred CcCcc---chhHHh---hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCC-hhhh-----------hcc
Q 038724 61 ELKLE---TSQDDM---ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHS-EEVC-----------VDC 120 (483)
Q Consensus 61 ~~~~~---~~~~~i---~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~-~~~~-----------l~~ 120 (483)
...+. .+.+.+ ...+++.++|||+++.. .....+...+........+|++|.+ ..+. +.+
T Consensus 98 ~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~p 177 (624)
T PRK14959 98 NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTR 177 (624)
T ss_pred ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCC
Confidence 22222 222222 34567789999999765 3345555555433334555555544 3222 788
Q ss_pred CChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch-HHHHHHHHHh
Q 038724 121 FTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP-LALTIVGRAM 170 (483)
Q Consensus 121 L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lal~~~~~~l 170 (483)
++.++..+.+...+..... .-..+.++.|++.++|.. .|+..+...+
T Consensus 178 Ls~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 178 LSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999998888876654431 223456888999999865 5666665443
No 94
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.47 E-value=3.9e-07 Score=82.62 Aligned_cols=68 Identities=22% Similarity=0.257 Sum_probs=54.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC--cCccchhHHh-------------------------
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE--LKLETSQDDM------------------------- 71 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i------------------------- 71 (483)
-..++|+|++|+|||||+++++++. . ..+|+.++|+.+.++ .+..++++.+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999987 3 238999999987766 5666666665
Q ss_pred -----hhcCCcEEEEEcCCCCc
Q 038724 72 -----ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 72 -----~l~~~~~LlvlDdv~~~ 88 (483)
.-+++++++++|++..-
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 34589999999998543
No 95
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.5e-06 Score=84.83 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=102.3
Q ss_pred CCChhHHHHHHHHHhcCCeEE-EEEEcCCCCcHHHHHHHHHhhcccCC---------------------CCCCEEEEEEe
Q 038724 1 IENPKQFYQVWRFLVKKDVGI-IGLFGTGGVGKTTILKQINNRFCSER---------------------PGFDVVIWVVV 58 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~-v~i~G~~GiGKTtLa~~~~~~~~~~~---------------------~~f~~~~~v~~ 58 (483)
||.+..++.|..++..+.... +.++|+.|+||||+|+.+++..-... .+.+ ++.+..
T Consensus 16 vGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d-vieida 94 (584)
T PRK14952 16 VGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID-VVELDA 94 (584)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce-EEEecc
Confidence 688889999999999877654 68999999999999999998652110 1112 333433
Q ss_pred CCCcCccc---hhHHh---hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEE-ecCChhhh-----------h
Q 038724 59 SKELKLET---SQDDM---ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVF-TTHSEEVC-----------V 118 (483)
Q Consensus 59 ~~~~~~~~---~~~~i---~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-TtR~~~~~-----------l 118 (483)
+....+.+ +...+ ...+++-++|+|+++.. .....+...+........+|+ ||....+. +
T Consensus 95 as~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F 174 (584)
T PRK14952 95 ASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPF 174 (584)
T ss_pred ccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEe
Confidence 33222332 22222 23466778999999755 335555555554444555554 44433322 7
Q ss_pred ccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH-HHHHH
Q 038724 119 DCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL-ALTIV 166 (483)
Q Consensus 119 ~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-al~~~ 166 (483)
.+++.++..+.+......+.. .-..+....|++.++|.+. ++..+
T Consensus 175 ~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 175 RLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred eCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 889999988888776654431 1224556788999999775 44443
No 96
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.46 E-value=5.1e-08 Score=96.65 Aligned_cols=162 Identities=24% Similarity=0.276 Sum_probs=119.3
Q ss_pred cccccceEEEEccccccccccC-CCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCE
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLN-TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQH 370 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 370 (483)
...+.++..+++.+|.++.+.. ...+++|++|++++|.++.+.+ +..++.|+.|++++|. +..++ .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNL-ISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCc-chhcc-CCccchhhhc
Confidence 4567789999999999999988 7889999999999999998877 6778889999999996 45444 5777999999
Q ss_pred EeccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCc---------cchhhHhhhccccc--cccceeeccCccc
Q 038724 371 LDISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSD---------DAESLLKEMLCLEQ--LNIIRLTSCSLCS 438 (483)
Q Consensus 371 L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~---------~~~~~~~~l~~l~~--L~~L~l~~~~l~~ 438 (483)
+++++|.+..++.. ...+.+|+.+++.+|.+..+.....++ ......+.+..+.. |+.+.+++|++..
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc
Confidence 99999999888764 578889999999999877652211110 11122222333333 7788888887654
Q ss_pred c----CCCCCcccccceeeeeee
Q 038724 439 L----CGLPTVQCLTSRRLNLEV 457 (483)
Q Consensus 439 l----~~l~~l~~l~l~~~~~~~ 457 (483)
+ ..+..+..|++..+.+..
T Consensus 247 ~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 247 SPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred ccccccccccccccchhhccccc
Confidence 3 455566667766666554
No 97
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=3.6e-06 Score=86.53 Aligned_cols=159 Identities=11% Similarity=0.123 Sum_probs=103.2
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhccc--------------------CCCCCCEEEEEEeC
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCS--------------------ERPGFDVVIWVVVS 59 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~--------------------~~~~f~~~~~v~~~ 59 (483)
||.+..++.|..++..+... .+.++|+.|+||||+|+.+++.... ...+|+. ..+..+
T Consensus 20 iGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ld~~ 98 (614)
T PRK14971 20 VGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HELDAA 98 (614)
T ss_pred cCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEeccc
Confidence 68889999999999887664 5789999999999999998886520 1123442 334444
Q ss_pred CCcCccchhHHh------hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEec-CChhhh-----------hc
Q 038724 60 KELKLETSQDDM------ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTT-HSEEVC-----------VD 119 (483)
Q Consensus 60 ~~~~~~~~~~~i------~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-R~~~~~-----------l~ 119 (483)
......++...+ ...+.+-++|+|+++... ....+...+......+.+|++| +...+. +.
T Consensus 99 ~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~ 178 (614)
T PRK14971 99 SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFN 178 (614)
T ss_pred ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecC
Confidence 333333333332 344566788999997653 3555555555444456655544 333222 77
Q ss_pred cCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 120 CFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 120 ~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
++++++....+...+...+. .-..+.++.|++.++|...-+
T Consensus 179 ~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 179 RIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 89999998888877654441 223456788999999976544
No 98
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=4.5e-06 Score=82.95 Aligned_cols=159 Identities=10% Similarity=0.082 Sum_probs=99.4
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccC--------------------CCCCCEEEEEEeC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSE--------------------RPGFDVVIWVVVS 59 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~--------------------~~~f~~~~~v~~~ 59 (483)
||.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++..... ..+++ ..++...
T Consensus 20 iGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i~g~ 98 (451)
T PRK06305 20 LGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEIDGA 98 (451)
T ss_pred cCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEeecc
Confidence 6889999999999988765 568899999999999999998866211 01122 2222222
Q ss_pred CCcC---ccchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCCh-hhh-----------hc
Q 038724 60 KELK---LETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSE-EVC-----------VD 119 (483)
Q Consensus 60 ~~~~---~~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~-~~~-----------l~ 119 (483)
.... ++++.+.+ ...+.+-++|+|+++... ..+.+...+.+......+|++|.+. .+. +.
T Consensus 99 ~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~ 178 (451)
T PRK06305 99 SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLK 178 (451)
T ss_pred ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCC
Confidence 2222 22222222 234677889999997542 3444555554433456666555332 221 77
Q ss_pred cCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 120 CFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 120 ~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
++++++....+...+...+ ..-..+.++.+++.++|.+.-+
T Consensus 179 ~l~~~el~~~L~~~~~~eg---~~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 179 RIPEETIIDKLALIAKQEG---IETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred CCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHH
Confidence 8999998888877664332 1223456888999999976433
No 99
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=4.5e-06 Score=83.53 Aligned_cols=162 Identities=10% Similarity=0.087 Sum_probs=103.7
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEeCC
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSER-------------------PGFDVVIWVVVSK 60 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~~v~~~~ 60 (483)
||-+..++.+..++..+..+ .+.++|+.|+||||+|+.+++...... .+++ ++.+..+.
T Consensus 17 iGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eldaas 95 (535)
T PRK08451 17 IGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMDAAS 95 (535)
T ss_pred cCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEecccc
Confidence 67788889999999887665 568999999999999999887652111 1111 23333332
Q ss_pred CcCccchhHHh------hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hcc
Q 038724 61 ELKLETSQDDM------ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDC 120 (483)
Q Consensus 61 ~~~~~~~~~~i------~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~ 120 (483)
.....++...+ ...+++-++|+|+++... ....+...+....+.+++|++|.+..-. +.+
T Consensus 96 ~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~ 175 (535)
T PRK08451 96 NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQ 175 (535)
T ss_pred ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCC
Confidence 22333333333 122567789999997653 2445555554444456666666553221 888
Q ss_pred CChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 121 FTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 121 L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
++.++..+.+...+..++. .-..+.++.|++.++|.+.-+...
T Consensus 176 Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 176 IPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 9999988888877655441 223567889999999988555443
No 100
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.6e-06 Score=85.36 Aligned_cols=157 Identities=14% Similarity=0.119 Sum_probs=98.1
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCC---------------------------CCCCE
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSER---------------------------PGFDV 52 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~---------------------------~~f~~ 52 (483)
||-+..+..|.+++..+... .+.++|+.|+||||+|+.+++...... .+++.
T Consensus 19 vGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~ 98 (620)
T PRK14954 19 TAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNI 98 (620)
T ss_pred cCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCe
Confidence 68888899999999887664 488999999999999999987762110 12222
Q ss_pred EEEEEeCCCcC---ccchhHHh---hhcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEE-ecCChhhh------
Q 038724 53 VIWVVVSKELK---LETSQDDM---ILSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVF-TTHSEEVC------ 117 (483)
Q Consensus 53 ~~~v~~~~~~~---~~~~~~~i---~l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilv-TtR~~~~~------ 117 (483)
. .+....... ++++.+.+ ...+.+-++|+||++.... .+.+...+......+.+|+ |++...+.
T Consensus 99 ~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SR 177 (620)
T PRK14954 99 S-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR 177 (620)
T ss_pred E-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh
Confidence 1 122222222 33333333 3345666889999976533 4555555544444455554 44333322
Q ss_pred -----hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH
Q 038724 118 -----VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL 161 (483)
Q Consensus 118 -----l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 161 (483)
+.+++.++....+...+.... ..-..+.++.+++.++|...
T Consensus 178 c~~vef~~l~~~ei~~~L~~i~~~eg---i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 178 CQRFNFKRIPLDEIQSQLQMICRAEG---IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred ceEEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhCCCHH
Confidence 778999888877777654332 11235568889999999664
No 101
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.8e-08 Score=92.25 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=112.6
Q ss_pred cccccccceEEEEccccccccccCC----CCCCcccEEEecCCccccccchh-hhcCCCccEEEccCCccCcc-CCcccc
Q 038724 290 SDALKWLGLRRMSLMNNQIKTLLNT----PSCPHLLTLFLNDNYLQDIKNGF-FQFMPCLKVLNLSYNRFLTK-LPSGIS 363 (483)
Q Consensus 290 ~~~~~~~~l~~l~l~~~~~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~-~p~~~~ 363 (483)
++...+++++.|+++.|-+....+. ..+++|+.|+|+.|.+.....+. -..+++|+.|.|+.|.+... +-....
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 5666788999999999977765443 46899999999999876543321 23567899999999975432 112344
Q ss_pred cCcCCCEEeccCCC-CCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc---
Q 038724 364 KLVSLQHLDISFTS-TLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL--- 439 (483)
Q Consensus 364 ~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l--- 439 (483)
.+++|..|+|..|. +..--.....++.|+.|||++|++...+ .....+.|+.|+.|+++.|.+.++
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~----------~~~~~~~l~~L~~Lnls~tgi~si~~~ 289 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD----------QGYKVGTLPGLNQLNLSSTGIASIAEP 289 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc----------cccccccccchhhhhccccCcchhcCC
Confidence 67889999999995 2222222455678999999999976432 234567889999999999987554
Q ss_pred --------CCCCCcccccceeeeee
Q 038724 440 --------CGLPTVQCLTSRRLNLE 456 (483)
Q Consensus 440 --------~~l~~l~~l~l~~~~~~ 456 (483)
..+++|+.|++..|++.
T Consensus 290 d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 290 DVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred CccchhhhcccccceeeecccCccc
Confidence 44678888888888773
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=5.2e-06 Score=79.48 Aligned_cols=161 Identities=8% Similarity=0.062 Sum_probs=96.9
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccC-----C-CCC-----CE-------------EEE
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSE-----R-PGF-----DV-------------VIW 55 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~-----~-~~f-----~~-------------~~~ 55 (483)
||-++..+.+...+..+.. ..+.|+|+.|+||||+|..+++..-.. . ..+ .+ ..+
T Consensus 26 ~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~ 105 (351)
T PRK09112 26 FGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLH 105 (351)
T ss_pred cCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEE
Confidence 5788888999999988764 458999999999999999998876220 0 000 00 122
Q ss_pred EEeC--C-------CcCccchh---HHh---hhcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCE-EEEecCChhhh
Q 038724 56 VVVS--K-------ELKLETSQ---DDM---ILSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSK-VVFTTHSEEVC 117 (483)
Q Consensus 56 v~~~--~-------~~~~~~~~---~~i---~l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~-ilvTtR~~~~~ 117 (483)
+... . ...+.++. +.+ ...+++-++|||+++.... ...+...+........ |++|++...+.
T Consensus 106 l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~ll 185 (351)
T PRK09112 106 ITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLL 185 (351)
T ss_pred eecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhcc
Confidence 2211 0 01112211 111 3356778999999986532 3344444433223344 44444332222
Q ss_pred -----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 118 -----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 118 -----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
+.+++.++..+.+.+..... .-..+....+++.++|.|.....+
T Consensus 186 ptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-----~~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 186 PTIRSRCQPISLKPLDDDELKKALSHLGSSQ-----GSDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred HHHHhhccEEEecCCCHHHHHHHHHHhhccc-----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999998743211 122445778999999999865433
No 103
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=5.5e-06 Score=85.30 Aligned_cols=159 Identities=13% Similarity=0.142 Sum_probs=99.5
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCCC----------------CCCEEEEEEeCCCcC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSERP----------------GFDVVIWVVVSKELK 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----------------~f~~~~~v~~~~~~~ 63 (483)
||-+..++.|.+++..++. +.+.++|+.|+||||+|+.+++..-.... +++ ++++.......
T Consensus 21 iGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieidaasn~~ 99 (725)
T PRK07133 21 VGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDAASNNG 99 (725)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEeccccCC
Confidence 6888899999999988754 45689999999999999999876521111 111 12232221122
Q ss_pred ---ccchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEE-EecCChhhh-----------hccCCh
Q 038724 64 ---LETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVV-FTTHSEEVC-----------VDCFTP 123 (483)
Q Consensus 64 ---~~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~il-vTtR~~~~~-----------l~~L~~ 123 (483)
++++...+ ...+++-++|+|+++... .+..+...+........+| +|++...+. +.+++.
T Consensus 100 vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~ 179 (725)
T PRK07133 100 VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISE 179 (725)
T ss_pred HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCH
Confidence 33444444 345777799999997552 3555555554333344444 454433332 778999
Q ss_pred HHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 124 QESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 124 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
++..+.+...+...+. ....+.++.+++.++|.+.-+
T Consensus 180 eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 180 DEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 9988888776544331 222455788999999876543
No 104
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.41 E-value=4.1e-07 Score=86.07 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=54.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc--CccchhHHh--------------------------
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL--KLETSQDDM-------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i-------------------------- 71 (483)
...+|+|++|+||||||+++|+.. . .++|+.++||.+.+.. .+.++++.+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999987 3 3389999999988887 555666655
Q ss_pred ----hhcCCcEEEEEcCCCCc
Q 038724 72 ----ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 72 ----~l~~~~~LlvlDdv~~~ 88 (483)
...|+.++|++|++..-
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHH
Confidence 34689999999998543
No 105
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.39 E-value=1.2e-07 Score=89.05 Aligned_cols=207 Identities=17% Similarity=0.197 Sum_probs=130.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-CEEEEEEeCCCcCccchhHH------------------h--hhcCCc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGF-DVVIWVVVSKELKLETSQDD------------------M--ILSTKK 77 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f-~~~~~v~~~~~~~~~~~~~~------------------i--~l~~~~ 77 (483)
.|.+.++|+|||||||++-++.+ . ...| +++.++...+-.+...+.-- + ...++|
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhh
Confidence 47999999999999999999988 3 3344 44555544433322222111 1 567899
Q ss_pred EEEEEcCCCCccc-cccccCCCCCCCCCCEEEEecCChhhh-------hccCChH-HHHHHHHHHhcCC--cccCCCCch
Q 038724 78 FLLLLDDLWETID-LSKIGVPLPSQKIVSKVVFTTHSEEVC-------VDCFTPQ-ESWQVFQMKVGNE--TLVSHPAIH 146 (483)
Q Consensus 78 ~LlvlDdv~~~~~-~~~l~~~~~~~~~gs~ilvTtR~~~~~-------l~~L~~~-~a~~l~~~~~~~~--~~~~~~~~~ 146 (483)
.++|+||-....+ -..+...+......-.|+.|+|+.... +.+|+.. ++.++|..-+... .+.-.....
T Consensus 90 ~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~ 169 (414)
T COG3903 90 ALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNA 169 (414)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCCch
Confidence 9999999743311 111122222233345688888887655 6667655 6888887655322 222334556
Q ss_pred hHHHHHHhHcCCchHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc--cCC--CChHHHHHhhhcccCCCCchhhhHHHhhh
Q 038724 147 KPAKMVAKDCGGLPLALTIVGRAMAYKKTPEEWKDAIEILMRSA--LQF--PGINKVYYRLKFSFDRLPSDQIRSCFLFC 222 (483)
Q Consensus 147 ~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~~w~~~~~~l~~~~--~~~--~~~~~~~~~l~~s~~~L~~~~~~~~~~~~ 222 (483)
..+..|.++.+|.|++|..+++..+.-.+.+.-..+-++..... ... .........+..||.-|.. ..+..|..+
T Consensus 170 a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-we~~~~~rL 248 (414)
T COG3903 170 AAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-WERALFGRL 248 (414)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-HHHHHhcch
Confidence 77889999999999999999998887332222222222221111 111 1111566778999999998 788899999
Q ss_pred cCCCCCCc
Q 038724 223 SPFPGDYR 230 (483)
Q Consensus 223 a~fp~~~~ 230 (483)
+.|...+.
T Consensus 249 a~~~g~f~ 256 (414)
T COG3903 249 AVFVGGFD 256 (414)
T ss_pred hhhhhhhc
Confidence 99987654
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=98.36 E-value=3e-06 Score=76.83 Aligned_cols=139 Identities=15% Similarity=0.181 Sum_probs=81.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-ccchhHHhhhcCCcEEEEEcCCCCc---ccccc-c
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK-LETSQDDMILSTKKFLLLLDDLWET---IDLSK-I 94 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i~l~~~~~LlvlDdv~~~---~~~~~-l 94 (483)
+.+.|+|.+|+|||.|++++++.. . ..-..++|++..+-.. ...+.+ .+.+-. ++|+||+... ..|.. +
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~--~~~~~v~y~~~~~~~~~~~~~~~--~~~~~d-~LiiDDi~~~~~~~~~~~~L 119 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-E--QRGEPAVYLPLAELLDRGPELLD--NLEQYE-LVCLDDLDVIAGKADWEEAL 119 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-H--hCCCcEEEeeHHHHHhhhHHHHH--hhhhCC-EEEEechhhhcCChHHHHHH
Confidence 578999999999999999999876 2 1224467887543211 111111 122222 6789999633 22222 2
Q ss_pred cCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHh
Q 038724 95 GVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAK 154 (483)
Q Consensus 95 ~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 154 (483)
...+.. ..+|..+|+|++..... +++++.++-.+++...+.... ..-.++..+.|++
T Consensus 120 f~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~---~~l~~ev~~~L~~ 196 (234)
T PRK05642 120 FHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG---LHLTDEVGHFILT 196 (234)
T ss_pred HHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHH
Confidence 222221 22467788888754332 677888888888875543322 1222466777777
Q ss_pred HcCCchHHHHHHH
Q 038724 155 DCGGLPLALTIVG 167 (483)
Q Consensus 155 ~c~g~Plal~~~~ 167 (483)
.+.|....+..+-
T Consensus 197 ~~~~d~r~l~~~l 209 (234)
T PRK05642 197 RGTRSMSALFDLL 209 (234)
T ss_pred hcCCCHHHHHHHH
Confidence 7777665554433
No 107
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1e-05 Score=80.94 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=100.7
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhccc--CC----------------CCCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCS--ER----------------PGFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~--~~----------------~~f~~~~~v~~~~~ 61 (483)
||-+..+..+..++..+... .+.++|+.|+||||+|+.++..... .. +.+.....+..+..
T Consensus 19 iGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~ 98 (486)
T PRK14953 19 IGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASN 98 (486)
T ss_pred cChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccC
Confidence 57888899999999887554 5678999999999999999886521 00 01122334443332
Q ss_pred cCc---cchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEE-ecCChhhh-----------hccC
Q 038724 62 LKL---ETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVF-TTHSEEVC-----------VDCF 121 (483)
Q Consensus 62 ~~~---~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilv-TtR~~~~~-----------l~~L 121 (483)
... +.+...+ ...+++-++|+|+++... ....+...+........+|+ |++...+. +.++
T Consensus 99 ~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~l 178 (486)
T PRK14953 99 RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKP 178 (486)
T ss_pred CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCC
Confidence 222 2333333 345677899999997552 34445444544333444544 44332221 7788
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 167 (483)
+.++....+...+...+. .-..+.++.+++.++|.+..+....
T Consensus 179 s~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 179 TKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 888888888776644331 2234567888999999776554333
No 108
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.36 E-value=2.6e-06 Score=91.04 Aligned_cols=158 Identities=14% Similarity=0.150 Sum_probs=93.2
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccC--CCC-CCEEEE-EEeCC----Cc-------Ccc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSE--RPG-FDVVIW-VVVSK----EL-------KLE 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~~~-f~~~~~-v~~~~----~~-------~~~ 65 (483)
|||++++.++.+.|......-+.++|++|+|||++|+.++++.... ... ....+| +.++. .. .+.
T Consensus 190 iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk 269 (852)
T TIGR03345 190 LGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLK 269 (852)
T ss_pred cCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHH
Confidence 7999999999999988776778899999999999999999876211 111 122333 33332 11 122
Q ss_pred chhHHhhhcCCcEEEEEcCCCCcc-------ccc---cccCCCCCCCCCCEEEEecCChhh----h-------------h
Q 038724 66 TSQDDMILSTKKFLLLLDDLWETI-------DLS---KIGVPLPSQKIVSKVVFTTHSEEV----C-------------V 118 (483)
Q Consensus 66 ~~~~~i~l~~~~~LlvlDdv~~~~-------~~~---~l~~~~~~~~~gs~ilvTtR~~~~----~-------------l 118 (483)
.+..++.-.+++++|++|+++... +.+ -+.+.+. .+ .-++|-||....+ . +
T Consensus 270 ~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G-~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v 347 (852)
T TIGR03345 270 SVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RG-ELRTIAATTWAEYKKYFEKDPALTRRFQVVKV 347 (852)
T ss_pred HHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-CC-CeEEEEecCHHHHhhhhhccHHHHHhCeEEEe
Confidence 233333334678999999986542 111 1222222 22 2445555544222 1 8
Q ss_pred ccCChHHHHHHHHHHhcCCcc-cCCCCchhHHHHHHhHcCCch
Q 038724 119 DCFTPQESWQVFQMKVGNETL-VSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 119 ~~L~~~~a~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~c~g~P 160 (483)
++++.++..+++......-.. ..-.-..+..+.+++.+.+..
T Consensus 348 ~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 348 EEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 899999999997654422110 111223455667777765443
No 109
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=8.9e-06 Score=83.70 Aligned_cols=162 Identities=12% Similarity=0.097 Sum_probs=99.0
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCCC---------------------CCCEEEEEEe
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSERP---------------------GFDVVIWVVV 58 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---------------------~f~~~~~v~~ 58 (483)
||.++.++.|.+++..+.. +.+.++|+.|+||||+|+.+++....... |.+ ++.+..
T Consensus 19 iGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D-~~ei~~ 97 (620)
T PRK14948 19 VGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALD-VIEIDA 97 (620)
T ss_pred cChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCcc-EEEEec
Confidence 6888899999999987753 57889999999999999999987621100 001 222332
Q ss_pred CCCcCccchhH---Hh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCCh-hhh-----------h
Q 038724 59 SKELKLETSQD---DM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSE-EVC-----------V 118 (483)
Q Consensus 59 ~~~~~~~~~~~---~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~-~~~-----------l 118 (483)
........+.+ .. ...+++-++|+|+++... ....+...+........+|++|.+. .+. +
T Consensus 98 ~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f 177 (620)
T PRK14948 98 ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDF 177 (620)
T ss_pred cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEe
Confidence 22222322222 22 234667789999998653 3555555554433345444444333 222 6
Q ss_pred ccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 119 DCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 119 ~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
..++.++....+...+..... .-..+.++.|++.++|.+..+...
T Consensus 178 ~~l~~~ei~~~L~~ia~kegi---~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 178 RRIPLEAMVQHLSEIAEKESI---EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred cCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 678888877777766544331 122356788999999987655433
No 110
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=9.3e-06 Score=83.72 Aligned_cols=162 Identities=11% Similarity=0.105 Sum_probs=100.5
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC--C------------------CCCEEEEEEeC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER--P------------------GFDVVIWVVVS 59 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~------------------~f~~~~~v~~~ 59 (483)
||-+..++.|..++..+.. ..+.++|+.|+||||+|+.+++...... . +.+ ++.+..+
T Consensus 19 iGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d-~~~i~~~ 97 (585)
T PRK14950 19 VGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD-VIEMDAA 97 (585)
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe-EEEEecc
Confidence 6888899999999987655 4578999999999999999987762110 0 111 2233332
Q ss_pred CCcCccc---hhHHh---hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCCh-hhh-----------hc
Q 038724 60 KELKLET---SQDDM---ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHSE-EVC-----------VD 119 (483)
Q Consensus 60 ~~~~~~~---~~~~i---~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~-~~~-----------l~ 119 (483)
......+ +...+ ...+++-++|||+++.. ...+.+...+......+.+|+++.+. .+. +.
T Consensus 98 ~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~ 177 (585)
T PRK14950 98 SHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFH 177 (585)
T ss_pred ccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCC
Confidence 2232222 22222 23356778999999755 33555555554433455666555432 221 66
Q ss_pred cCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 120 CFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 120 ~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
.++.++....+...+...+. .-..+.++.+++.++|.+..+...
T Consensus 178 ~l~~~el~~~L~~~a~~egl---~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 178 RHSVADMAAHLRKIAAAEGI---NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 77888888777776654331 123456889999999988655443
No 111
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=1.4e-05 Score=81.28 Aligned_cols=161 Identities=10% Similarity=0.090 Sum_probs=102.5
Q ss_pred CCChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccC-------------------CCCCCEEEEEEeCC
Q 038724 1 IENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSE-------------------RPGFDVVIWVVVSK 60 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~-------------------~~~f~~~~~v~~~~ 60 (483)
||-+..++.+..++.++..+ .+.++|+.|+||||+|+.+++..... ..+++ ..++....
T Consensus 19 iGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d-v~~idgas 97 (563)
T PRK06647 19 EGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD-VIEIDGAS 97 (563)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-eEEecCcc
Confidence 68888899999999887654 58899999999999999999876211 01233 23333222
Q ss_pred CcCcc---chhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCCh-hhh-----------hcc
Q 038724 61 ELKLE---TSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSE-EVC-----------VDC 120 (483)
Q Consensus 61 ~~~~~---~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~-~~~-----------l~~ 120 (483)
..... ++...+ ...+++-++|+|+++... .+..+...+........+|++|.+. .+. +.+
T Consensus 98 ~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~ 177 (563)
T PRK06647 98 NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRL 177 (563)
T ss_pred cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecC
Confidence 23333 333222 334677789999997653 3555655665444456665555432 221 777
Q ss_pred CChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHH
Q 038724 121 FTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTI 165 (483)
Q Consensus 121 L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 165 (483)
++.++..+.+...+.... ..-..+.++.|++.++|.+..+..
T Consensus 178 l~~~el~~~L~~i~~~eg---i~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 178 LSLEKIYNMLKKVCLEDQ---IKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred CCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 888888888877664433 122356678899999998754433
No 112
>PRK09087 hypothetical protein; Validated
Probab=98.31 E-value=3.3e-06 Score=75.91 Aligned_cols=132 Identities=11% Similarity=0.026 Sum_probs=81.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcCCcEEEEEcCCCCcc-ccccccCC
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILSTKKFLLLLDDLWETI-DLSKIGVP 97 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~~~~LlvlDdv~~~~-~~~~l~~~ 97 (483)
.+.+.|+|++|+|||+|++..++.. . ..|++.. .+.. ++... +. .-++++||++... .-..+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~---~-----~~~i~~~-~~~~-~~~~~--~~--~~~l~iDDi~~~~~~~~~lf~l 109 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS---D-----ALLIHPN-EIGS-DAANA--AA--EGPVLIEDIDAGGFDETGLFHL 109 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc---C-----CEEecHH-Hcch-HHHHh--hh--cCeEEEECCCCCCCCHHHHHHH
Confidence 4579999999999999999998754 1 1255442 1111 11111 11 1378889996432 11222222
Q ss_pred CCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcC
Q 038724 98 LPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCG 157 (483)
Q Consensus 98 ~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~ 157 (483)
+.. ...|..+|+|++..... ++++++++-.+++.+.+.... ..-.++..+.|++.+.
T Consensus 110 ~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~---~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 110 INSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ---LYVDPHVVYYLVSRME 186 (226)
T ss_pred HHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhh
Confidence 221 12367788888743221 889999999999998885543 2333567888888888
Q ss_pred CchHHHHHHH
Q 038724 158 GLPLALTIVG 167 (483)
Q Consensus 158 g~Plal~~~~ 167 (483)
|...++..+-
T Consensus 187 r~~~~l~~~l 196 (226)
T PRK09087 187 RSLFAAQTIV 196 (226)
T ss_pred hhHHHHHHHH
Confidence 8776665433
No 113
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.30 E-value=1.6e-06 Score=84.41 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=87.1
Q ss_pred CCChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC-c-Ccc
Q 038724 1 IENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE-L-KLE 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~-~-~~~ 65 (483)
.|+++.++++.+.+.. ...+-+.++|++|+|||++|+++++.. ...|-.+........ . ...
T Consensus 125 ~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l~~~~~g~~~ 201 (364)
T TIGR01242 125 GGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVRKYIGEGA 201 (364)
T ss_pred CChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHHHHHhhhHHH
Confidence 4788889999887742 124568999999999999999999977 333321110000000 0 000
Q ss_pred chhHHh---hhcCCcEEEEEcCCCCccc----------------cccccCCCCC--CCCCCEEEEecCChhhh-------
Q 038724 66 TSQDDM---ILSTKKFLLLLDDLWETID----------------LSKIGVPLPS--QKIVSKVVFTTHSEEVC------- 117 (483)
Q Consensus 66 ~~~~~i---~l~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~--~~~gs~ilvTtR~~~~~------- 117 (483)
.....+ .....+.+|++||++.... +..+...+.. ...+.+||+||......
T Consensus 202 ~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~ 281 (364)
T TIGR01242 202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRP 281 (364)
T ss_pred HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCc
Confidence 111111 3345678999999975310 1111111111 12356777777643221
Q ss_pred --------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 --------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 --------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
+...+.++..++|..+......... .....+++.+.|..
T Consensus 282 grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~----~~~~~la~~t~g~s 328 (364)
T TIGR01242 282 GRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED----VDLEAIAKMTEGAS 328 (364)
T ss_pred ccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc----CCHHHHHHHcCCCC
Confidence 6677889999999887754331111 12567777777654
No 114
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=8.6e-07 Score=56.63 Aligned_cols=39 Identities=28% Similarity=0.408 Sum_probs=26.1
Q ss_pred cCCCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCC
Q 038724 366 VSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 366 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
++|++|++++|+|.++|+.+.+|++|+.|++++|++..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 357777777777777776677777777777777775533
No 115
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=2.4e-05 Score=79.95 Aligned_cols=160 Identities=11% Similarity=0.107 Sum_probs=99.9
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEeCC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER-------------------PGFDVVIWVVVSK 60 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~~v~~~~ 60 (483)
||.+..+..+..++..+.. +.+.++|+.|+|||++|+.+++...... .+++ ++.+..+.
T Consensus 19 iGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~eidaas 97 (559)
T PRK05563 19 VGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIEIDAAS 97 (559)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEEeeccc
Confidence 6899999999999987754 4577899999999999999987652111 1222 23343332
Q ss_pred CcC---ccchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEE-ecCChhhh-----------hcc
Q 038724 61 ELK---LETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVF-TTHSEEVC-----------VDC 120 (483)
Q Consensus 61 ~~~---~~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilv-TtR~~~~~-----------l~~ 120 (483)
... ++++...+ ...++.-++|+|+++... .+..+...+........+|+ ||....+. +.+
T Consensus 98 ~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~ 177 (559)
T PRK05563 98 NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKR 177 (559)
T ss_pred cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCC
Confidence 222 23333333 345677789999997553 35555555544333444444 44333222 677
Q ss_pred CChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHH
Q 038724 121 FTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALT 164 (483)
Q Consensus 121 L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~ 164 (483)
++.++....+...+...+. .-..+.++.|++.++|.+..+.
T Consensus 178 ~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 178 ISVEDIVERLKYILDKEGI---EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 8888888888776644331 1224567788889988775443
No 116
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.25 E-value=5.8e-07 Score=95.71 Aligned_cols=104 Identities=27% Similarity=0.343 Sum_probs=83.5
Q ss_pred ccceEEEEccccc--cccccC--CCCCCcccEEEecCCc-cccccchhhhcCCCccEEEccCCccCccCCcccccCcCCC
Q 038724 295 WLGLRRMSLMNNQ--IKTLLN--TPSCPHLLTLFLNDNY-LQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQ 369 (483)
Q Consensus 295 ~~~l~~l~l~~~~--~~~~~~--~~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 369 (483)
.+++++|-+..|. +..++. ...++.|++|||++|. +..+|.. ++.+-+||+|+++++. +..+|.++++|..|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTG-ISHLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCC-ccccchHHHHHHhhh
Confidence 3468888888875 454444 2568999999999874 4555554 8999999999999996 779999999999999
Q ss_pred EEeccCCC-CCccCccccCCcCCCEEecCCCC
Q 038724 370 HLDISFTS-TLELPEELKALEKLKYLDMDDHQ 400 (483)
Q Consensus 370 ~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~n~ 400 (483)
+|++..+. +..+|.....|++|++|.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 99999998 55565556679999999988765
No 117
>PF14516 AAA_35: AAA-like domain
Probab=98.25 E-value=2.4e-05 Score=74.86 Aligned_cols=161 Identities=16% Similarity=0.219 Sum_probs=101.9
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC-----cCccchhHHh----
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE-----LKLETSQDDM---- 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~-----~~~~~~~~~i---- 71 (483)
|+|+...+++.+.+.+.+ ..+.|.|+..+|||+|..++.+.. .. ..+. ++++++..- .+...+...+
T Consensus 14 i~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l-~~-~~~~-~v~id~~~~~~~~~~~~~~f~~~~~~~i 89 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERL-QQ-QGYR-CVYIDLQQLGSAIFSDLEQFLRWFCEEI 89 (331)
T ss_pred cCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHH-HH-CCCE-EEEEEeecCCCcccCCHHHHHHHHHHHH
Confidence 678877777778887643 489999999999999999998877 22 2333 456655431 1222222222
Q ss_pred ---------------------------------hhcCCcEEEEEcCCCCcccc----ccccCCC----------CCCCCC
Q 038724 72 ---------------------------------ILSTKKFLLLLDDLWETIDL----SKIGVPL----------PSQKIV 104 (483)
Q Consensus 72 ---------------------------------~l~~~~~LlvlDdv~~~~~~----~~l~~~~----------~~~~~g 104 (483)
...+++.+|+||+|+..-.. .++...+ +...+-
T Consensus 90 ~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L 169 (331)
T PF14516_consen 90 SRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKL 169 (331)
T ss_pred HHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceE
Confidence 22378999999999755221 1111111 111111
Q ss_pred CEEEEecCChhh-h--------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHH
Q 038724 105 SKVVFTTHSEEV-C--------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRA 169 (483)
Q Consensus 105 s~ilvTtR~~~~-~--------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~ 169 (483)
+-|++.+..... . +++++.+|...|...+..... ....+.|...+||+|..+..++..
T Consensus 170 ~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~~~~~ 242 (331)
T PF14516_consen 170 RLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQKACYL 242 (331)
T ss_pred EEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 122222211111 1 899999999999887653321 233899999999999999999999
Q ss_pred hcC
Q 038724 170 MAY 172 (483)
Q Consensus 170 l~~ 172 (483)
+..
T Consensus 243 l~~ 245 (331)
T PF14516_consen 243 LVE 245 (331)
T ss_pred HHH
Confidence 865
No 118
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.24 E-value=9.3e-06 Score=83.79 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=36.2
Q ss_pred CCChhHHHHHHHHHhc----CC-eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK----KD-VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~----~~-~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+||++++++|...|.. .+ ..++.|+|++|.|||+.++.+.++.
T Consensus 758 PhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 758 PCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999998864 22 2467899999999999999998766
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.24 E-value=5.9e-06 Score=79.02 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=67.5
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh-------h
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM-------I 72 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i-------~ 72 (483)
||.++..+.+..++..+.. .++.++|++|+|||++|+++++.. ... ...++.+. .....+...+ .
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~~~~~~~ 96 (316)
T PHA02544 24 ILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTRFASTVS 96 (316)
T ss_pred cCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHHHHHhhc
Confidence 5888899999999987754 566669999999999999999865 222 23444443 2222222222 2
Q ss_pred hcCCcEEEEEcCCCCcc---ccccccCCCCCCCCCCEEEEecCCh
Q 038724 73 LSTKKFLLLLDDLWETI---DLSKIGVPLPSQKIVSKVVFTTHSE 114 (483)
Q Consensus 73 l~~~~~LlvlDdv~~~~---~~~~l~~~~~~~~~gs~ilvTtR~~ 114 (483)
..+.+-++|+||++... ....+...+.....++++|+||...
T Consensus 97 ~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 97 LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 23456789999997551 1222322233334567888888654
No 120
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.3e-05 Score=80.51 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=100.0
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCCC-------------------CCCEEEEEEeCC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSERP-------------------GFDVVIWVVVSK 60 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-------------------~f~~~~~v~~~~ 60 (483)
||.+..+..|..++..+.. +.+.++|+.|+||||+|+.+++..-.... +++ .+.+....
T Consensus 19 iGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~~eid~~s 97 (576)
T PRK14965 19 TGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-VFEIDGAS 97 (576)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-eeeeeccC
Confidence 6888889999999988765 45689999999999999999887521110 112 12222222
Q ss_pred CcC---ccchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEE-ecCChhhh-----------hcc
Q 038724 61 ELK---LETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVF-TTHSEEVC-----------VDC 120 (483)
Q Consensus 61 ~~~---~~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilv-TtR~~~~~-----------l~~ 120 (483)
... ++++...+ ...+++-++|+|+++... ....+...+.+......+|+ ||....+. +.+
T Consensus 98 ~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~ 177 (576)
T PRK14965 98 NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRR 177 (576)
T ss_pred ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCC
Confidence 222 33333333 234566789999997653 34455555544334455554 44433332 678
Q ss_pred CChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch-HHHHHH
Q 038724 121 FTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP-LALTIV 166 (483)
Q Consensus 121 L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lal~~~ 166 (483)
++.++....+......++. .-..+..+.|++.++|.. .++..+
T Consensus 178 l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 178 IPLQKIVDRLRYIADQEGI---SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8888888777776644431 223456778899998866 444444
No 121
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.23 E-value=2e-05 Score=81.50 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=36.9
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||++..+..+.+.+.......+.|+|++|+||||+|+.+++..
T Consensus 157 iGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 157 VGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred eeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 5788888888888876666789999999999999999998755
No 122
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.22 E-value=3.9e-06 Score=81.35 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=61.5
Q ss_pred CChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh----------
Q 038724 2 ENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM---------- 71 (483)
Q Consensus 2 gr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i---------- 71 (483)
+.++.++.+...+... +.+.++|++|+|||++|+++++.. .....|+.+.||++++..+..++....
T Consensus 179 i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~ 255 (459)
T PRK11331 179 IPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRK 255 (459)
T ss_pred CCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCCCCCeEec
Confidence 4567788888888765 478889999999999999999987 344567778888887655444333211
Q ss_pred ------------hhcCCcEEEEEcCCCCc
Q 038724 72 ------------ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 72 ------------~l~~~~~LlvlDdv~~~ 88 (483)
.-.++++++|+|++...
T Consensus 256 ~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 256 DGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 12247899999999755
No 123
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=3.4e-07 Score=90.82 Aligned_cols=106 Identities=33% Similarity=0.447 Sum_probs=86.1
Q ss_pred ccceEEEEccccccccccC-CCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 295 WLGLRRMSLMNNQIKTLLN-TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
+..+..+++..|.+..+.. ...+++|..|++.+|.+..+... +..+++|++|++++|. +..+. .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccc-ccccc-chhhccchhhhee
Confidence 3445556677777776333 57889999999999999888764 6779999999999996 55554 5888889999999
Q ss_pred cCCCCCccCccccCCcCCCEEecCCCCCcCC
Q 038724 374 SFTSTLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 374 ~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
++|.|..++. +..+++|+.+++++|.+..+
T Consensus 148 ~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 148 SGNLISDISG-LESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred ccCcchhccC-CccchhhhcccCCcchhhhh
Confidence 9999999864 66799999999999997765
No 124
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=1.2e-07 Score=74.81 Aligned_cols=103 Identities=21% Similarity=0.343 Sum_probs=78.6
Q ss_pred EEccccccccccCC----CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCC
Q 038724 301 MSLMNNQIKTLLNT----PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFT 376 (483)
Q Consensus 301 l~l~~~~~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 376 (483)
+++++|.+-.++.. ....+|...+|++|.++.+|+.+-..++.+..|++++|. +..+|..+..++.|+.|+++.|
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC
Confidence 45555554433221 345677788888888888888876777788888888885 7788888888888888888888
Q ss_pred CCCccCccccCCcCCCEEecCCCCCcCC
Q 038724 377 STLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 377 ~i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
.+...|.-+..|.+|-.|+..+|.+..+
T Consensus 111 ~l~~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 111 PLNAEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred ccccchHHHHHHHhHHHhcCCCCccccC
Confidence 8888888877788888888888876654
No 125
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.19 E-value=1.2e-05 Score=86.27 Aligned_cols=88 Identities=20% Similarity=0.321 Sum_probs=60.5
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCC--CC--CCEEEEEEeCCCc-----------Ccc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSER--PG--FDVVIWVVVSKEL-----------KLE 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~~--f~~~~~v~~~~~~-----------~~~ 65 (483)
|||+.++.++.+.|.......+.++|++|+|||++|+.++.+..... .. -..++++.++.-. .+.
T Consensus 181 igr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk 260 (857)
T PRK10865 181 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLK 260 (857)
T ss_pred CCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHH
Confidence 79999999999999887767788999999999999999999872110 00 1223344433211 122
Q ss_pred chhHHhhhcCCcEEEEEcCCCCc
Q 038724 66 TSQDDMILSTKKFLLLLDDLWET 88 (483)
Q Consensus 66 ~~~~~i~l~~~~~LlvlDdv~~~ 88 (483)
.++.++.-.+++++|++|+++..
T Consensus 261 ~~~~~~~~~~~~~ILfIDEih~l 283 (857)
T PRK10865 261 GVLNDLAKQEGNVILFIDELHTM 283 (857)
T ss_pred HHHHHHHHcCCCeEEEEecHHHh
Confidence 33333344568899999999744
No 126
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.18 E-value=1e-05 Score=87.13 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=79.8
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCC--CC-CCE-EEEEEeCCC----c-------Ccc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSER--PG-FDV-VIWVVVSKE----L-------KLE 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~~-f~~-~~~v~~~~~----~-------~~~ 65 (483)
|||++++.++.+.|.......+.++|++|+|||++|..++.+..... .. ... ++.+.++.- . .+.
T Consensus 176 igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~ 255 (852)
T TIGR03346 176 IGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLK 255 (852)
T ss_pred CCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHH
Confidence 79999999999999887667778999999999999999998762110 00 122 333333211 1 122
Q ss_pred chhHHhhhcCCcEEEEEcCCCCccc---------cccccCCCCCCCCCCEEEE-ecCChh---hh-------------hc
Q 038724 66 TSQDDMILSTKKFLLLLDDLWETID---------LSKIGVPLPSQKIVSKVVF-TTHSEE---VC-------------VD 119 (483)
Q Consensus 66 ~~~~~i~l~~~~~LlvlDdv~~~~~---------~~~l~~~~~~~~~gs~ilv-TtR~~~---~~-------------l~ 119 (483)
.+...+.-.+++.+|++|+++.... ...+..+....+. -++|. ||.++. .. ++
T Consensus 256 ~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~-i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~ 334 (852)
T TIGR03346 256 AVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGE-LHCIGATTLDEYRKYIEKDAALERRFQPVFVD 334 (852)
T ss_pred HHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCc-eEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeC
Confidence 2222223345789999999974321 1122222222222 34444 554432 11 77
Q ss_pred cCChHHHHHHHHHHh
Q 038724 120 CFTPQESWQVFQMKV 134 (483)
Q Consensus 120 ~L~~~~a~~l~~~~~ 134 (483)
..+.++..+++....
T Consensus 335 ~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 335 EPTVEDTISILRGLK 349 (852)
T ss_pred CCCHHHHHHHHHHHH
Confidence 778899988887654
No 127
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.16 E-value=8.2e-06 Score=75.52 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....+.++|++|+||||+|+.+++..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999998765
No 128
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.16 E-value=1.3e-05 Score=78.39 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=86.0
Q ss_pred CCChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-----
Q 038724 1 IENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL----- 62 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~----- 62 (483)
+|+++.++++.+.+.. ..++-|.++|++|+|||++|+++++.. ...| +.+..+.-.
T Consensus 134 ~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~---i~v~~~~l~~~~~g 207 (389)
T PRK03992 134 GGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF---IRVVGSELVQKFIG 207 (389)
T ss_pred CCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCE---EEeehHHHhHhhcc
Confidence 4889999999887742 234568999999999999999999976 2222 112111100
Q ss_pred CccchhHHh---hhcCCcEEEEEcCCCCcc------------c----cccccCCCCC--CCCCCEEEEecCChhhh----
Q 038724 63 KLETSQDDM---ILSTKKFLLLLDDLWETI------------D----LSKIGVPLPS--QKIVSKVVFTTHSEEVC---- 117 (483)
Q Consensus 63 ~~~~~~~~i---~l~~~~~LlvlDdv~~~~------------~----~~~l~~~~~~--~~~gs~ilvTtR~~~~~---- 117 (483)
........+ .....+.+|+|||++... . +..+...+.. ...+..||.||......
T Consensus 208 ~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~al 287 (389)
T PRK03992 208 EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAI 287 (389)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHH
Confidence 011112222 334567899999997531 0 1111111111 12345677777543222
Q ss_pred -----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 -----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 -----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
+++.+.++-.++|..+......... .....+++.+.|.-
T Consensus 288 lRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~----~~~~~la~~t~g~s 337 (389)
T PRK03992 288 LRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD----VDLEELAELTEGAS 337 (389)
T ss_pred cCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc----CCHHHHHHHcCCCC
Confidence 6678888888888877654331111 12456666666643
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.15 E-value=6.1e-06 Score=87.53 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|||+++++++.+.|......-+.++|++|+|||++|+.++++.
T Consensus 185 igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 185 IGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred cCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999988766778899999999999999999876
No 130
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.13 E-value=5.5e-05 Score=67.12 Aligned_cols=81 Identities=23% Similarity=0.254 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHH----hcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC--CCcCccchhHHhhhc
Q 038724 1 IENPKQFYQVWRFL----VKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVS--KELKLETSQDDMILS 74 (483)
Q Consensus 1 vgr~~~~~~l~~~l----~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~--~~~~~~~~~~~i~l~ 74 (483)
+|-++..+.|.+-. ......-|.++|..|.|||++++++.+.+ ..++ .--|.+. +-.++.++...+...
T Consensus 30 ~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y-~~~G----LRlIev~k~~L~~l~~l~~~l~~~ 104 (249)
T PF05673_consen 30 IGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY-ADQG----LRLIEVSKEDLGDLPELLDLLRDR 104 (249)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH-hhcC----ceEEEECHHHhccHHHHHHHHhcC
Confidence 35555555554433 23456689999999999999999999877 2222 2234444 345677888888888
Q ss_pred CCcEEEEEcCCC
Q 038724 75 TKKFLLLLDDLW 86 (483)
Q Consensus 75 ~~~~LlvlDdv~ 86 (483)
..+++|++||+.
T Consensus 105 ~~kFIlf~DDLs 116 (249)
T PF05673_consen 105 PYKFILFCDDLS 116 (249)
T ss_pred CCCEEEEecCCC
Confidence 899999999984
No 131
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.09 E-value=8.6e-06 Score=77.69 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=53.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC--cCccchhHHh--------------------------
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE--LKLETSQDDM-------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~--~~~~~~~~~i-------------------------- 71 (483)
..++|+|++|+|||||++.+++.. . .++|+..+|+.+.++ ..+.++++.+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 468999999999999999999987 2 347999999988866 4555555555
Q ss_pred ----hhcCCcEEEEEcCCCCc
Q 038724 72 ----ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 72 ----~l~~~~~LlvlDdv~~~ 88 (483)
..+|++++|++|++..-
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 45689999999998543
No 132
>PRK06620 hypothetical protein; Validated
Probab=98.09 E-value=2.6e-05 Score=69.47 Aligned_cols=124 Identities=9% Similarity=-0.002 Sum_probs=67.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcCCcEEEEEcCCCCccccccccCCCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILSTKKFLLLLDDLWETIDLSKIGVPLP 99 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~~~~LlvlDdv~~~~~~~~l~~~~~ 99 (483)
+.+.|+|++|+|||+|++++++.. .. .++. ..+... +. . ...-++++||++..++ ..+...+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~~~----~~-~-~~~d~lliDdi~~~~~-~~lf~l~N 107 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFFNE----EI-L-EKYNAFIIEDIENWQE-PALLHIFN 107 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhhch----hH-H-hcCCEEEEeccccchH-HHHHHHHH
Confidence 679999999999999999988765 11 1222 111111 11 1 2234788999974321 11221111
Q ss_pred C-CCCCCEEEEecCChhhh-----------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH
Q 038724 100 S-QKIVSKVVFTTHSEEVC-----------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL 161 (483)
Q Consensus 100 ~-~~~gs~ilvTtR~~~~~-----------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 161 (483)
. ..+|..+++|++..... ++++++++-.+++.+.+.... ..-.++..+-|++.+.|.-.
T Consensus 108 ~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~---l~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 108 IINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS---VTISRQIIDFLLVNLPREYS 184 (214)
T ss_pred HHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHccCCHH
Confidence 0 13467889888754332 666666666666655543222 12224455666666655443
Q ss_pred HH
Q 038724 162 AL 163 (483)
Q Consensus 162 al 163 (483)
.+
T Consensus 185 ~l 186 (214)
T PRK06620 185 KI 186 (214)
T ss_pred HH
Confidence 33
No 133
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.08 E-value=1.1e-05 Score=86.57 Aligned_cols=43 Identities=30% Similarity=0.400 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|||+++++++.+.|......-+.++|++|+|||++|..++.+.
T Consensus 182 igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 182 IGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999988766678899999999999999999876
No 134
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.07 E-value=6.6e-06 Score=69.72 Aligned_cols=105 Identities=27% Similarity=0.356 Sum_probs=77.9
Q ss_pred ccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCC--cccccCcCCCEEe
Q 038724 295 WLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLP--SGISKLVSLQHLD 372 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~L~ 372 (483)
..+...+++++|.+..+...+.++.|.+|.|++|.+..+.+..-..+++|..|.|.+|+ +..+- ..+..++.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 34455678888888888777888888888888888888888766777888888888886 33332 2355667888888
Q ss_pred ccCCCCCccCcc----ccCCcCCCEEecCCCC
Q 038724 373 ISFTSTLELPEE----LKALEKLKYLDMDDHQ 400 (483)
Q Consensus 373 l~~~~i~~lp~~----~~~l~~L~~L~l~~n~ 400 (483)
+-+|++.+.+.. +..+++|+.||..+-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 888887766554 6778888888877543
No 135
>CHL00181 cbbX CbbX; Provisional
Probab=98.06 E-value=2.2e-05 Score=73.23 Aligned_cols=114 Identities=14% Similarity=0.184 Sum_probs=60.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc--------CccchhHHhhhcCCcEEEEEcCCCCc---
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL--------KLETSQDDMILSTKKFLLLLDDLWET--- 88 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~--------~~~~~~~~i~l~~~~~LlvlDdv~~~--- 88 (483)
..+.++|++|+|||++|+.+++.. ...+.-...-|+.++... ..... ..+.-+...-+|+||+++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~-~~~l~~a~ggVLfIDE~~~l~~~ 137 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTRDDLVGQYIGHTAPKT-KEVLKKAMGGVLFIDEAYYLYKP 137 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecHHHHHHHHhccchHHH-HHHHHHccCCEEEEEccchhccC
Confidence 358899999999999999998765 111111111133333110 00111 11211123358999999642
Q ss_pred --------cccccccCCCCCCCCCCEEEEecCChhhh------------------hccCChHHHHHHHHHHhc
Q 038724 89 --------IDLSKIGVPLPSQKIVSKVVFTTHSEEVC------------------VDCFTPQESWQVFQMKVG 135 (483)
Q Consensus 89 --------~~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------------l~~L~~~~a~~l~~~~~~ 135 (483)
+....+...+.......+||+++...... +++++.++..+++...+.
T Consensus 138 ~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 138 DNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred CCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 11222333333333446676666533221 566777777777766653
No 136
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0001 Score=70.97 Aligned_cols=87 Identities=16% Similarity=0.237 Sum_probs=63.0
Q ss_pred CCChhHHHHHHHHHhc----CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh-----
Q 038724 1 IENPKQFYQVWRFLVK----KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM----- 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~----~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i----- 71 (483)
.+|+++++++...|.. ..+.-+.|+|.+|.|||+.++.++++........+ .++|.+-...+..++..++
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHcC
Confidence 3799999999888764 33445999999999999999999998833322333 6777665555544444444
Q ss_pred --------------------hhcCCcEEEEEcCCCCc
Q 038724 72 --------------------ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 72 --------------------~l~~~~~LlvlDdv~~~ 88 (483)
.-.++.+++|||+++..
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 44678999999999754
No 137
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.05 E-value=4.4e-06 Score=70.75 Aligned_cols=126 Identities=24% Similarity=0.273 Sum_probs=78.2
Q ss_pred EEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCC
Q 038724 299 RRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTS 377 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 377 (483)
+.+++.+.++..+... ....+...+||++|.+..++. |..++.|.+|.++.|++...-|.--.-+++|.+|.+.+|+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 3456666665544433 245567778888887777655 6777888888888887655555444445668888888887
Q ss_pred CCccCc--cccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeecc
Q 038724 378 TLELPE--ELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSC 434 (483)
Q Consensus 378 i~~lp~--~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~ 434 (483)
|.++.. .+..+++|++|.+-+|.....+. -..--+..+++|+.|+.+..
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~--------YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKN--------YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccC--------ceeEEEEecCcceEeehhhh
Confidence 666543 25667778888777776432111 01112445666666666554
No 138
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=5.1e-05 Score=72.54 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=82.1
Q ss_pred ChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEeCCCc
Q 038724 3 NPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSER-------------------PGFDVVIWVVVSKEL 62 (483)
Q Consensus 3 r~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~~v~~~~~~ 62 (483)
-+..++.+.+.+..++.+ .+.++|+.|+|||++|..+++..-... .|.|.......+...
T Consensus 11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i 90 (329)
T PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSI 90 (329)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccC
Confidence 566788888888877654 568999999999999999987652111 133332222222223
Q ss_pred Cccch---hHHhh---hcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCChhhh------------hccCC
Q 038724 63 KLETS---QDDMI---LSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFT 122 (483)
Q Consensus 63 ~~~~~---~~~i~---l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~ 122 (483)
...++ .+.+. ..+.+-++|+|+++.... ...+...+.+...++.+|++|.+..-. +.+++
T Consensus 91 ~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~ 170 (329)
T PRK08058 91 KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLP 170 (329)
T ss_pred CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCC
Confidence 33333 22232 456777899999976533 445666665555567777776654322 78899
Q ss_pred hHHHHHHHHH
Q 038724 123 PQESWQVFQM 132 (483)
Q Consensus 123 ~~~a~~l~~~ 132 (483)
.++..+.+..
T Consensus 171 ~~~~~~~L~~ 180 (329)
T PRK08058 171 PESLIQRLQE 180 (329)
T ss_pred HHHHHHHHHH
Confidence 9988777764
No 139
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=6.2e-05 Score=71.51 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=85.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEeC---CCcCccc---hhHHh--
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSER-------------------PGFDVVIWVVVS---KELKLET---SQDDM-- 71 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~~v~~~---~~~~~~~---~~~~i-- 71 (483)
...+.++|+.|+|||++|..+++..--.. .|-| ..|+... +...+.+ +...+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 34688999999999999999887762110 1222 3444322 2233333 33333
Q ss_pred -hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHHHHHHHHhcC
Q 038724 72 -ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESWQVFQMKVGN 136 (483)
Q Consensus 72 -~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~~l~~~~~~~ 136 (483)
...+++-++|||+++... ....+...+.+...++.+|++|.+.... +.+++.+++.+.+......
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~ 180 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE 180 (328)
T ss_pred ccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc
Confidence 233555566789998653 3455555554444456677776665433 8889999998888765311
Q ss_pred CcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 137 ETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
...+.+..++..++|.|.....+
T Consensus 181 -------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -------CChHHHHHHHHHcCCCHHHHHHH
Confidence 12344667888999999755433
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.03 E-value=2.3e-05 Score=73.15 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=60.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc--------CccchhHHhhhcCCcEEEEEcCCCCc----
Q 038724 21 IIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL--------KLETSQDDMILSTKKFLLLLDDLWET---- 88 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~--------~~~~~~~~i~l~~~~~LlvlDdv~~~---- 88 (483)
.+.++|++|+|||++|+.+++.. ...+.....-++.++... ....+ .++.-+-..-+|+||+++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l-~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~-~~~~~~a~~gvL~iDEi~~L~~~~ 137 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL-HRLGYVRKGHLVSVTRDDLVGQYIGHTAPKT-KEILKRAMGGVLFIDEAYYLYRPD 137 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH-HHcCCcccceEEEecHHHHhHhhcccchHHH-HHHHHHccCcEEEEechhhhccCC
Confidence 68899999999999998887765 111211111233322110 00111 11111223468899999632
Q ss_pred -------cccccccCCCCCCCCCCEEEEecCChhh------------------hhccCChHHHHHHHHHHhcC
Q 038724 89 -------IDLSKIGVPLPSQKIVSKVVFTTHSEEV------------------CVDCFTPQESWQVFQMKVGN 136 (483)
Q Consensus 89 -------~~~~~l~~~~~~~~~gs~ilvTtR~~~~------------------~l~~L~~~~a~~l~~~~~~~ 136 (483)
+....+...+.....+.+||+++..... .+++++.+|..+++...+..
T Consensus 138 ~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 138 NERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred CccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 1122333333333345566666543211 07778888888887776643
No 141
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.01 E-value=0.00013 Score=72.12 Aligned_cols=139 Identities=18% Similarity=0.159 Sum_probs=80.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh----------hhcCCcEEEEEcCCCCcc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM----------ILSTKKFLLLLDDLWETI 89 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i----------~l~~~~~LlvlDdv~~~~ 89 (483)
..+.|+|++|+|||.|++++++... ....-..++|++..+-. .++...+ .++ ..-+|||||++...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~ 212 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSSEKFT--NDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLA 212 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEHHHHH--HHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhc
Confidence 4689999999999999999999872 22112345677643211 1111111 122 23488899997532
Q ss_pred cc----ccccCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCcccCCCCc
Q 038724 90 DL----SKIGVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNETLVSHPAI 145 (483)
Q Consensus 90 ~~----~~l~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~ 145 (483)
.. +.+...+.. ..++..+++|+....-. +++.+.++-.+++...+.... ..-.
T Consensus 213 ~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~---~~l~ 289 (405)
T TIGR00362 213 GKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG---LELP 289 (405)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC---CCCC
Confidence 11 112111111 12345677777542211 567788888888887775433 1223
Q ss_pred hhHHHHHHhHcCCchHHHHH
Q 038724 146 HKPAKMVAKDCGGLPLALTI 165 (483)
Q Consensus 146 ~~~~~~i~~~c~g~Plal~~ 165 (483)
++..+.|++.+.|....+.-
T Consensus 290 ~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 290 DEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHHHhcCCCHHHHHH
Confidence 56678888888887765543
No 142
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=5.7e-06 Score=52.85 Aligned_cols=39 Identities=33% Similarity=0.525 Sum_probs=19.7
Q ss_pred CccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccC
Q 038724 343 CLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELP 382 (483)
Q Consensus 343 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp 382 (483)
+|++|++++|+ +..+|..+++|++|++|++++|++.++|
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 45555555554 3344444555555555555555555443
No 143
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.00 E-value=1.2e-05 Score=71.93 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=76.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc----------CccchhHHhhhcCCcEEEEEcCCCCc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL----------KLETSQDDMILSTKKFLLLLDDLWET 88 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~----------~~~~~~~~i~l~~~~~LlvlDdv~~~ 88 (483)
...+.|+|+.|+|||.|.+++++...+... -..++|++..+=. ...++.. .++ .-=+++|||++..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~--~~~-~~DlL~iDDi~~l 109 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLSAEEFIREFADALRDGEIEEFKD--RLR-SADLLIIDDIQFL 109 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEEHHHHHHHHHHHHHTTSHHHHHH--HHC-TSSEEEEETGGGG
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeecHHHHHHHHHHHHHcccchhhhh--hhh-cCCEEEEecchhh
Confidence 346899999999999999999998722112 2236677543210 1111111 233 3447789999754
Q ss_pred cc---cc-cccCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCcccCCCC
Q 038724 89 ID---LS-KIGVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNETLVSHPA 144 (483)
Q Consensus 89 ~~---~~-~l~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~~~~~~~ 144 (483)
.. |. .+...+.. ...|.++|+|++..... ++++++++-.+++.+.+..... .-
T Consensus 110 ~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~---~l 186 (219)
T PF00308_consen 110 AGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI---EL 186 (219)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-----S
T ss_pred cCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC---CC
Confidence 22 11 11111111 12467899998655333 7778888888888777654431 23
Q ss_pred chhHHHHHHhHcCCchHHHHHH
Q 038724 145 IHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 145 ~~~~~~~i~~~c~g~Plal~~~ 166 (483)
.+++++-|++.+.+..-.+..+
T Consensus 187 ~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 187 PEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp -HHHHHHHHHHTTSSHHHHHHH
T ss_pred cHHHHHHHHHhhcCCHHHHHHH
Confidence 3456667777766655555433
No 144
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.99 E-value=5.4e-06 Score=72.47 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHh---cCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLV---KKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|||+++++++...+. ....+.+.|+|++|+|||+|.++++.+.
T Consensus 3 vgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 3 VGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999993 3456899999999999999999999888
No 145
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00017 Score=68.21 Aligned_cols=158 Identities=13% Similarity=0.121 Sum_probs=98.4
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccC-------------CCCCCEEEEEEeC-----CC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSE-------------RPGFDVVIWVVVS-----KE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~-------------~~~f~~~~~v~~~-----~~ 61 (483)
||-++..+.+.+.+..++. +...++|+.|+||+++|.++++..-.. ..|-| ..|+.-. +.
T Consensus 7 iGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~g~~ 85 (314)
T PRK07399 7 IGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQGKL 85 (314)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEeccccccccc
Confidence 6888999999999998864 689999999999999999988765211 11222 3444321 10
Q ss_pred ------------------c---CccchhHHh---hhcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCChh
Q 038724 62 ------------------L---KLETSQDDM---ILSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSEE 115 (483)
Q Consensus 62 ------------------~---~~~~~~~~i---~l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~~ 115 (483)
. .++++.+.+ ...+.+-++|+|+++.... ...+...+-+..+..-|++|+....
T Consensus 86 ~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~ 165 (314)
T PRK07399 86 ITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPES 165 (314)
T ss_pred cchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHh
Confidence 0 111222222 3557788999999976633 4445445533333334444443332
Q ss_pred hh-----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHH
Q 038724 116 VC-----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTI 165 (483)
Q Consensus 116 ~~-----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 165 (483)
+. +.++++++..+.+......+. .......++..++|.|.....
T Consensus 166 Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 166 LLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred CcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 22 889999999999887643211 111246788999999976543
No 146
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=5.8e-05 Score=75.10 Aligned_cols=147 Identities=10% Similarity=0.091 Sum_probs=88.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchh----------HHh-hhcCCcEEEEEcCCCCc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQ----------DDM-ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~----------~~i-~l~~~~~LlvlDdv~~~ 88 (483)
..+.|+|..|+|||.|+.++++.... ...-..++|++..+- ...+. .++ ..-...-+|||||+...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~~~~f--~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l 218 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMSGDEF--ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFL 218 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEHHHH--HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccc
Confidence 46899999999999999999986521 122233566654321 11111 111 11123448889999644
Q ss_pred cc----cccccCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCcccCCCC
Q 038724 89 ID----LSKIGVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNETLVSHPA 144 (483)
Q Consensus 89 ~~----~~~l~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~~~~~~~ 144 (483)
.. .+.+...+.. ...|..||+|+...... +++++.++-.+++.+.+..... ...-
T Consensus 219 ~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl-~~~l 297 (450)
T PRK14087 219 SYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI-KQEV 297 (450)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCC-CCCC
Confidence 21 1222222221 12345688886543221 7899999999999988754331 1133
Q ss_pred chhHHHHHHhHcCCchHHHHHHHHHh
Q 038724 145 IHKPAKMVAKDCGGLPLALTIVGRAM 170 (483)
Q Consensus 145 ~~~~~~~i~~~c~g~Plal~~~~~~l 170 (483)
.++..+.|++.++|.|..+..+...+
T Consensus 298 ~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 298 TEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 46778899999999998887665443
No 147
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.97 E-value=2.8e-05 Score=76.36 Aligned_cols=149 Identities=16% Similarity=0.133 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-----C
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL-----K 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~-----~ 63 (483)
|.++.++++.+++.- ...+-|.++|++|+|||++|+++++.. ...|- .+..+.-. .
T Consensus 187 Gl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi---~V~~seL~~k~~Ge 260 (438)
T PTZ00361 187 GLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATFL---RVVGSELIQKYLGD 260 (438)
T ss_pred CHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCEE---EEecchhhhhhcch
Confidence 667778888777741 134568899999999999999999976 33331 12111100 0
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc----------------cccccCCCCC--CCCCCEEEEecCChhhh-----
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID----------------LSKIGVPLPS--QKIVSKVVFTTHSEEVC----- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~--~~~gs~ilvTtR~~~~~----- 117 (483)
.......+ +..+.+++|+||+++.... +..+...+.. ...+.+||+||......
T Consensus 261 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLl 340 (438)
T PTZ00361 261 GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALI 340 (438)
T ss_pred HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhc
Confidence 11112222 4456789999999853210 0111111111 12346777777654333
Q ss_pred ----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 ----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 ----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
+...+.++..++|..+.......... ....++..+.|+-
T Consensus 341 RpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv----dl~~la~~t~g~s 389 (438)
T PTZ00361 341 RPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV----DLEEFIMAKDELS 389 (438)
T ss_pred cCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc----CHHHHHHhcCCCC
Confidence 66777888888888776544321111 2455565655543
No 148
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.97 E-value=3.7e-05 Score=76.65 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=52.7
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCC--CCCCEEEEEEeCCCc----
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSER--PGFDVVIWVVVSKEL---- 62 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~~f~~~~~v~~~~~~---- 62 (483)
|.++.++++.+.+.- ...+-+.++|++|+|||++|+++++...... ..+....|+.+....
T Consensus 186 Gl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~k 265 (512)
T TIGR03689 186 GLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNK 265 (512)
T ss_pred ChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhccc
Confidence 577888888777642 1345689999999999999999999872110 011223344433211
Q ss_pred -------CccchhHHh---hhcCCcEEEEEcCCCC
Q 038724 63 -------KLETSQDDM---ILSTKKFLLLLDDLWE 87 (483)
Q Consensus 63 -------~~~~~~~~i---~l~~~~~LlvlDdv~~ 87 (483)
.++.+.... ...+++++|+||+++.
T Consensus 266 yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~ 300 (512)
T TIGR03689 266 YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDS 300 (512)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhh
Confidence 111121111 2346899999999974
No 149
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.96 E-value=5.9e-05 Score=73.83 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC----ccchhHHh---hhcCCc
Q 038724 5 KQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK----LETSQDDM---ILSTKK 77 (483)
Q Consensus 5 ~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~----~~~~~~~i---~l~~~~ 77 (483)
.-+.++.+.+..... ++.|.|+-++||||+++.+.... .+. .+++...+... +.+..... ... ++
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~-~~ 95 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIELLDLLRAYIELKER-EK 95 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhHHHHHHHHHHhhcc-CC
Confidence 344555555555544 99999999999999997777655 222 55554433222 22222222 222 77
Q ss_pred EEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhhh----------------hccCChHHHHHH
Q 038724 78 FLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEVC----------------VDCFTPQESWQV 129 (483)
Q Consensus 78 ~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~----------------l~~L~~~~a~~l 129 (483)
..++||.|.....|......+.+.++. ++++|+.+.... +-||+-.|-..+
T Consensus 96 ~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 96 SYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred ceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 899999999999999887777766655 888888776654 778887776544
No 150
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.95 E-value=4.5e-06 Score=68.42 Aligned_cols=93 Identities=23% Similarity=0.267 Sum_probs=55.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCC--CCCCEEEEEEeCCCcCccchhHHh-----------------------hh
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSER--PGFDVVIWVVVSKELKLETSQDDM-----------------------IL 73 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~~f~~~~~v~~~~~~~~~~~~~~i-----------------------~l 73 (483)
.+.+.|+|++|+|||+++++++++..... ..-..++|+.+....+...+...+ .+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46899999999999999999998762100 003446788877666655555555 22
Q ss_pred c-CCcEEEEEcCCCCc-c--ccccccCCCCCCCCCCEEEEecCC
Q 038724 74 S-TKKFLLLLDDLWET-I--DLSKIGVPLPSQKIVSKVVFTTHS 113 (483)
Q Consensus 74 ~-~~~~LlvlDdv~~~-~--~~~~l~~~~~~~~~gs~ilvTtR~ 113 (483)
. .+..+||+|+++.. . .++.+..... ..+.++++..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 2 33469999999654 2 2333322222 445666665544
No 151
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=5.4e-05 Score=71.27 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=91.3
Q ss_pred hHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccC----------------CCCCCEEEEEEeCCC------
Q 038724 5 KQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSE----------------RPGFDVVIWVVVSKE------ 61 (483)
Q Consensus 5 ~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~----------------~~~f~~~~~v~~~~~------ 61 (483)
...+.+.+.+..++.+ .+.++|+.|+||+++|.++++..--. ..|-| ..|+....+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcccccc
Confidence 3456777777777654 58899999999999999988655211 11222 334421110
Q ss_pred ---cCcc---chhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------h
Q 038724 62 ---LKLE---TSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------V 118 (483)
Q Consensus 62 ---~~~~---~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l 118 (483)
..++ ++.+.+ ...+++-++|||+++... ....+...+-+...++.+|++|.+.... +
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~ 169 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF 169 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeC
Confidence 1111 122222 344677899999998663 3444555554444567666666554333 7
Q ss_pred ccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHH
Q 038724 119 DCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTI 165 (483)
Q Consensus 119 ~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 165 (483)
.+++.+++.+.+.... .....++.++..++|.|+....
T Consensus 170 ~~~~~~~~~~~L~~~~---------~~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 170 KLPPAHEALAWLLAQG---------VSERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred CCcCHHHHHHHHHHcC---------CChHHHHHHHHHcCCCHHHHHH
Confidence 7888888887776431 1123366789999999986543
No 152
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=6.8e-05 Score=69.36 Aligned_cols=158 Identities=13% Similarity=0.160 Sum_probs=92.7
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC--------
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK-------- 60 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~-------- 60 (483)
|-++.+++|++..+- +.++=|.+||++|.|||-||++|+++. ... |+.+..
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~At-----FIrvvgSElVqKYi 226 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DAT-----FIRVVGSELVQKYI 226 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cce-----EEEeccHHHHHHHh
Confidence 567888888888753 245678999999999999999999977 333 333322
Q ss_pred --CcCccchhHHhhhcCCcEEEEEcCCCCccc----------------cccccCCCCCC--CCCCEEEEecCChhhh---
Q 038724 61 --ELKLETSQDDMILSTKKFLLLLDDLWETID----------------LSKIGVPLPSQ--KIVSKVVFTTHSEEVC--- 117 (483)
Q Consensus 61 --~~~~~~~~~~i~l~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~--~~gs~ilvTtR~~~~~--- 117 (483)
...+.+-+-.++-...++.|++|.++.... .-++...+..+ ...-|||..|-.....
T Consensus 227 GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPA 306 (406)
T COG1222 227 GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPA 306 (406)
T ss_pred ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChh
Confidence 222222222337778999999999964311 11122222222 2235777665544443
Q ss_pred ------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH----HHHHHHHHhc
Q 038724 118 ------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL----ALTIVGRAMA 171 (483)
Q Consensus 118 ------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl----al~~~~~~l~ 171 (483)
+..-+.+.-.++|.-+.........-+ .+.+++.|.|.-- |+..-|++++
T Consensus 307 LLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 307 LLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred hcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHHHHHhHHH
Confidence 333445555667777776555333233 4667777776653 3444455443
No 153
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.00021 Score=64.07 Aligned_cols=161 Identities=19% Similarity=0.187 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHHh-----cCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcC
Q 038724 1 IENPKQFYQVWRFLV-----KKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILST 75 (483)
Q Consensus 1 vgr~~~~~~l~~~l~-----~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~ 75 (483)
||-++..+.+.-.+. ++..-.|.++|++|.||||||.-+++.. ...+....==.+.+..++..++.. ++.
T Consensus 29 iGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK~gDlaaiLt~--Le~ 103 (332)
T COG2255 29 IGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEKPGDLAAILTN--LEE 103 (332)
T ss_pred cChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccChhhHHHHHhc--CCc
Confidence 344555554444443 2345689999999999999999999988 222211000011122233333222 333
Q ss_pred CcEEEEEcCCCCccc--------------cccccCCCCC-------CCCCCEEEEecCChhhh------------hccCC
Q 038724 76 KKFLLLLDDLWETID--------------LSKIGVPLPS-------QKIVSKVVFTTHSEEVC------------VDCFT 122 (483)
Q Consensus 76 ~~~LlvlDdv~~~~~--------------~~~l~~~~~~-------~~~gs~ilvTtR~~~~~------------l~~L~ 122 (483)
.. .+++|.++.... ++-+...-|. -.+-.-|=.|||.=.+. ++--+
T Consensus 104 ~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~ 182 (332)
T COG2255 104 GD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYT 182 (332)
T ss_pred CC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCC
Confidence 33 455788753311 1111111000 01124455688865444 77788
Q ss_pred hHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHh
Q 038724 123 PQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAM 170 (483)
Q Consensus 123 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l 170 (483)
.+|-.++..+.+..-. ..-.++.+.+|+++..|-|.-..-+-+.+
T Consensus 183 ~~eL~~Iv~r~a~~l~---i~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 183 VEELEEIVKRSAKILG---IEIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred HHHHHHHHHHHHHHhC---CCCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 8898888887774333 23345678899999999996554443333
No 154
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.92 E-value=4.9e-05 Score=79.93 Aligned_cols=132 Identities=18% Similarity=0.226 Sum_probs=77.4
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCC---CCEEEEEE-eCC----Cc---C----cc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPG---FDVVIWVV-VSK----EL---K----LE 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~~v~-~~~----~~---~----~~ 65 (483)
|||++++.++.+.|......-+.++|++|+|||++|+.+++........ .++.+|.. .+. .. . +.
T Consensus 189 iGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~ 268 (758)
T PRK11034 189 IGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFK 268 (758)
T ss_pred cCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHH
Confidence 7999999999999988655667899999999999999999865211111 13344431 111 00 1 11
Q ss_pred chhHHhhhcCCcEEEEEcCCCCc--------cc--cccccCCCCCCCCCCEEEEecCChhhh-----------------h
Q 038724 66 TSQDDMILSTKKFLLLLDDLWET--------ID--LSKIGVPLPSQKIVSKVVFTTHSEEVC-----------------V 118 (483)
Q Consensus 66 ~~~~~i~l~~~~~LlvlDdv~~~--------~~--~~~l~~~~~~~~~gs~ilvTtR~~~~~-----------------l 118 (483)
.+...+. +..+.+|+||+++.. .+ ...+..++...+ .-++|.+|....+. +
T Consensus 269 ~l~~~l~-~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v 346 (758)
T PRK11034 269 ALLKQLE-QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRALARRFQKIDI 346 (758)
T ss_pred HHHHHHH-hcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHHHhhCcEEEe
Confidence 2222222 345779999999632 11 111122222222 23444444333321 7
Q ss_pred ccCChHHHHHHHHHHh
Q 038724 119 DCFTPQESWQVFQMKV 134 (483)
Q Consensus 119 ~~L~~~~a~~l~~~~~ 134 (483)
++++.++..+++....
T Consensus 347 ~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 347 TEPSIEETVQIINGLK 362 (758)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8888899888887654
No 155
>CHL00176 ftsH cell division protein; Validated
Probab=97.91 E-value=6.8e-05 Score=77.39 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=72.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC------CcCccchhHHh--hhcCCcEEEEEcCCCCcc-
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK------ELKLETSQDDM--ILSTKKFLLLLDDLWETI- 89 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~------~~~~~~~~~~i--~l~~~~~LlvlDdv~~~~- 89 (483)
.+-|.++|++|+|||++|++++... ...| +.++.++ ......+..-+ .....+++|+|||++...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~---~~p~---i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~ 289 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA---EVPF---FSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGR 289 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCe---eeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhh
Confidence 3468999999999999999999876 2222 1121111 00111111111 456788999999996431
Q ss_pred ---------------ccccccCCCCC--CCCCCEEEEecCChhhh---------------hccCChHHHHHHHHHHhcCC
Q 038724 90 ---------------DLSKIGVPLPS--QKIVSKVVFTTHSEEVC---------------VDCFTPQESWQVFQMKVGNE 137 (483)
Q Consensus 90 ---------------~~~~l~~~~~~--~~~gs~ilvTtR~~~~~---------------l~~L~~~~a~~l~~~~~~~~ 137 (483)
.+..+...+.. ...+..+|.||...... ++..+.++-.+++..+....
T Consensus 290 ~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~ 369 (638)
T CHL00176 290 QRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK 369 (638)
T ss_pred cccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc
Confidence 01222222211 22345566666554322 55677778888887776543
Q ss_pred cccCCCCchhHHHHHHhHcCC
Q 038724 138 TLVSHPAIHKPAKMVAKDCGG 158 (483)
Q Consensus 138 ~~~~~~~~~~~~~~i~~~c~g 158 (483)
. .........+++.+.|
T Consensus 370 ~----~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 370 K----LSPDVSLELIARRTPG 386 (638)
T ss_pred c----cchhHHHHHHHhcCCC
Confidence 2 1112345677777776
No 156
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=3.6e-05 Score=73.96 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=55.6
Q ss_pred ccceEEEEccccccccccCCCCCCcccEEEecCC-ccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 295 WLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDN-YLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
+.+++.|++++|.++.+|.. ..+|++|.++++ .++.+|.. + .++|+.|++++|..+..+|.. |++|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEEe
Confidence 46678899999988888732 347999999874 45555433 3 357999999998656677754 566666
Q ss_pred cCCC---CCccCccc
Q 038724 374 SFTS---TLELPEEL 385 (483)
Q Consensus 374 ~~~~---i~~lp~~~ 385 (483)
.++. +..+|.++
T Consensus 120 ~~n~~~~L~~LPssL 134 (426)
T PRK15386 120 KGSATDSIKNVPNGL 134 (426)
T ss_pred CCCCCcccccCcchH
Confidence 6654 56677654
No 157
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.86 E-value=5.4e-07 Score=89.78 Aligned_cols=121 Identities=26% Similarity=0.352 Sum_probs=83.3
Q ss_pred CcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEec
Q 038724 318 PHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDM 396 (483)
Q Consensus 318 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l 396 (483)
..|.+.+.++|.+.....+ +.-++.|+.|+|++|++... +.+..++.|.+|||+.|.+..+|.- ...+ +|+.|.+
T Consensus 164 n~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDES-LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeee
Confidence 4456666677776665554 67778888888888875443 2677888888888888888888763 3333 4888888
Q ss_pred CCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccccCCC------CCcccccceeeee
Q 038724 397 DDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSLCGL------PTVQCLTSRRLNL 455 (483)
Q Consensus 397 ~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~l------~~l~~l~l~~~~~ 455 (483)
++|.+. ....+.+|.+|+.|+++.|-+...+.| ..|+.|.+..|-+
T Consensus 240 rnN~l~-------------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALT-------------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHH-------------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 888743 445677888999999999876544443 3444554444433
No 158
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.84 E-value=0.00019 Score=71.93 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=82.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh----------hhcCCcEEEEEcCCCCcc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM----------ILSTKKFLLLLDDLWETI 89 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i----------~l~~~~~LlvlDdv~~~~ 89 (483)
..+.|+|++|+|||.|++++++... ....-..+.|++...- ..++...+ .++ +.-+|||||++...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~ 224 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSEKF--TNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLA 224 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHHHH--HHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhc
Confidence 5689999999999999999999872 2111233566654321 11111111 122 34488999996432
Q ss_pred c----cccccCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCcccCCCCc
Q 038724 90 D----LSKIGVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNETLVSHPAI 145 (483)
Q Consensus 90 ~----~~~l~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~ 145 (483)
. .+.+...+.. ..+|..+++|+....-. +++.+.++-.+++...+.... ..-.
T Consensus 225 ~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~---~~l~ 301 (450)
T PRK00149 225 GKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG---IDLP 301 (450)
T ss_pred CCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC---CCCC
Confidence 1 1122211111 12345577777543211 678888999899888775432 2234
Q ss_pred hhHHHHHHhHcCCchHHHHHH
Q 038724 146 HKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 146 ~~~~~~i~~~c~g~Plal~~~ 166 (483)
++..+.|++.+.|....+.-+
T Consensus 302 ~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 302 DEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHHcCcCCCHHHHHHH
Confidence 567888999988887755433
No 159
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.83 E-value=6.6e-05 Score=73.22 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=82.1
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC----c-C
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE----L-K 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~----~-~ 63 (483)
|.+...++|.+.+.- ...+-|.++|++|+|||++|+++++.. ...|- .+..+.- . .
T Consensus 149 Gl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi---~i~~s~l~~k~~ge 222 (398)
T PTZ00454 149 GLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATFI---RVVGSEFVQKYLGE 222 (398)
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCEE---EEehHHHHHHhcch
Confidence 566667777766531 135679999999999999999999976 33331 1111100 0 0
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc----------------cccccCCCCC--CCCCCEEEEecCChhhh-----
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID----------------LSKIGVPLPS--QKIVSKVVFTTHSEEVC----- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~--~~~gs~ilvTtR~~~~~----- 117 (483)
......++ .....+.+|++|+++.... +..+...+.. ...+..+|+||......
T Consensus 223 ~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAll 302 (398)
T PTZ00454 223 GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALL 302 (398)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHc
Confidence 01111222 4557889999999864210 1111111211 12345677777644332
Q ss_pred ----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 ----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 ----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
++..+.++..++|..+......... .....+++.+.|.-
T Consensus 303 R~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d----vd~~~la~~t~g~s 351 (398)
T PTZ00454 303 RPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE----VDLEDFVSRPEKIS 351 (398)
T ss_pred CCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc----cCHHHHHHHcCCCC
Confidence 5566777777788766644332111 12456666665543
No 160
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.82 E-value=8.1e-05 Score=75.57 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=70.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC------CcCccchhHHh--hhcCCcEEEEEcCCCCccc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK------ELKLETSQDDM--ILSTKKFLLLLDDLWETID 90 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~------~~~~~~~~~~i--~l~~~~~LlvlDdv~~~~~ 90 (483)
.+-+.++|++|+|||++|+++++.. ...| +.++.+. ......+..-+ .....+++|+|||++....
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~---~~~~---~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEA---GVPF---FSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc---CCCe---eeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh
Confidence 3458999999999999999999876 2222 1111111 00111111111 3456778999999964311
Q ss_pred ----------------cccccCCCCC--CCCCCEEEEecCChhhh---------------hccCChHHHHHHHHHHhcCC
Q 038724 91 ----------------LSKIGVPLPS--QKIVSKVVFTTHSEEVC---------------VDCFTPQESWQVFQMKVGNE 137 (483)
Q Consensus 91 ----------------~~~l~~~~~~--~~~gs~ilvTtR~~~~~---------------l~~L~~~~a~~l~~~~~~~~ 137 (483)
+..+...+.. ...+..||.||...... ++..+.++-.+++..+....
T Consensus 162 ~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~ 241 (495)
T TIGR01241 162 QRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK 241 (495)
T ss_pred ccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC
Confidence 1111111111 12234555566544321 55667777788887776443
Q ss_pred cccCCCCchhHHHHHHhHcCCch
Q 038724 138 TLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 138 ~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
... .......+++.+.|.-
T Consensus 242 ~~~----~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 242 KLA----PDVDLKAVARRTPGFS 260 (495)
T ss_pred CCC----cchhHHHHHHhCCCCC
Confidence 211 1223557777777643
No 161
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=8e-06 Score=84.93 Aligned_cols=135 Identities=20% Similarity=0.290 Sum_probs=94.2
Q ss_pred ccceEEEEcccccccc-ccC---CCCCCcccEEEecCCccccc-cchhhhcCCCccEEEccCCccCccCCcccccCcCCC
Q 038724 295 WLGLRRMSLMNNQIKT-LLN---TPSCPHLLTLFLNDNYLQDI-KNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQ 369 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~-~~~---~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 369 (483)
..+|+.|++++...-. -++ ...+|+|++|.+++-.+... ....+.++|+|+.||+|+++ +..+ .+++.|+||+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 4568888888753221 111 14689999999998766433 23446789999999999996 4444 6899999999
Q ss_pred EEeccCCCCCccCc--cccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCc
Q 038724 370 HLDISFTSTLELPE--ELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSL 436 (483)
Q Consensus 370 ~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l 436 (483)
.|.+.+-.+..-+. .+.+|++|++||+|.......+.+ ..--.+--..||+|+.|+.|+..+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~i-----i~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKI-----IEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHH-----HHHHHHhcccCccccEEecCCcch
Confidence 99998777665432 478999999999998765433210 111122234588999999998875
No 162
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.79 E-value=1e-05 Score=74.29 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=69.6
Q ss_pred CcccEEEecCCcccccc----chhhhcCCCccEEEccCCccCc----cCCcccccCcCCCEEeccCCCCCc-----cCcc
Q 038724 318 PHLLTLFLNDNYLQDIK----NGFFQFMPCLKVLNLSYNRFLT----KLPSGISKLVSLQHLDISFTSTLE-----LPEE 384 (483)
Q Consensus 318 ~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~----~~p~~~~~l~~L~~L~l~~~~i~~-----lp~~ 384 (483)
+.|++++.++|.+..-+ ...|+..+.|+.+.+..|.+.. .+...+..+++|+.||+++|-++. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 44555555555444322 1223444555555555553211 112234556666666666665332 2223
Q ss_pred ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhc-cccccccceeeccCc---------cccCCCCCcccccceeee
Q 038724 385 LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEML-CLEQLNIIRLTSCSL---------CSLCGLPTVQCLTSRRLN 454 (483)
Q Consensus 385 ~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~-~l~~L~~L~l~~~~l---------~~l~~l~~l~~l~l~~~~ 454 (483)
+..+++|+.|++++|.+..- ....+.+.+. ..++|+.|.|.+|.+ .++...|.|..|+++.|.
T Consensus 237 L~s~~~L~El~l~dcll~~~-------Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENE-------GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hcccchheeecccccccccc-------cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 45555666666666654321 1233344443 356788888888765 235557778888777777
Q ss_pred ee
Q 038724 455 LE 456 (483)
Q Consensus 455 ~~ 456 (483)
++
T Consensus 310 l~ 311 (382)
T KOG1909|consen 310 LG 311 (382)
T ss_pred cc
Confidence 75
No 163
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.79 E-value=0.00011 Score=73.08 Aligned_cols=142 Identities=17% Similarity=0.156 Sum_probs=81.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh----------hhcCCcEEEEEcCCCCc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM----------ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i----------~l~~~~~LlvlDdv~~~ 88 (483)
...+.|+|++|+|||.|+.++++.. .....-..++|++..+- ..++...+ ......-+|++||++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l-~~~~~~~~v~yi~~~~f--~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l 206 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITSEKF--LNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFL 206 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEHHHH--HHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhh
Confidence 3469999999999999999999986 21111124667764321 11111111 12224558999999743
Q ss_pred cc---c-ccccCCCCC-CCCCCEEEEecC-Chhhh------------------hccCChHHHHHHHHHHhcCCcccCCCC
Q 038724 89 ID---L-SKIGVPLPS-QKIVSKVVFTTH-SEEVC------------------VDCFTPQESWQVFQMKVGNETLVSHPA 144 (483)
Q Consensus 89 ~~---~-~~l~~~~~~-~~~gs~ilvTtR-~~~~~------------------l~~L~~~~a~~l~~~~~~~~~~~~~~~ 144 (483)
.. . ..+...+.. ...|..|++||. ...-. +++.+.++-.+++.+.+.... ..-
T Consensus 207 ~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~---~~l 283 (440)
T PRK14088 207 IGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH---GEL 283 (440)
T ss_pred cCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC---CCC
Confidence 11 1 122222211 122456888875 32211 667788888888887765433 122
Q ss_pred chhHHHHHHhHcCCchHHHHHH
Q 038724 145 IHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 145 ~~~~~~~i~~~c~g~Plal~~~ 166 (483)
.++..+.|++.+.|.-..+.-+
T Consensus 284 ~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 284 PEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred CHHHHHHHHhccccCHHHHHHH
Confidence 3566888888888766555433
No 164
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=5.8e-05 Score=72.51 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=33.4
Q ss_pred ccceEEEEcccc-ccccccCCCCCCcccEEEecCC-ccccccchhhhcCCCccEEEccCCcc--CccCCcc
Q 038724 295 WLGLRRMSLMNN-QIKTLLNTPSCPHLLTLFLNDN-YLQDIKNGFFQFMPCLKVLNLSYNRF--LTKLPSG 361 (483)
Q Consensus 295 ~~~l~~l~l~~~-~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~--~~~~p~~ 361 (483)
..+|+.|.+.++ .++.+|. .-.++|+.|.+++| .+..+|+ +|+.|+++++.. +..+|.+
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP~-------sLe~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLPE-------SVRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred CCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccccc-------ccceEEeCCCCCcccccCcch
Confidence 345777888763 4444432 22357888888877 5544443 366677765532 3445544
No 165
>PRK10536 hypothetical protein; Provisional
Probab=97.78 E-value=6.3e-05 Score=67.59 Aligned_cols=40 Identities=20% Similarity=0.135 Sum_probs=33.5
Q ss_pred CChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 2 ENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 2 gr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.+....+..++.+. ..|.++|+.|.|||+||.+++.+.
T Consensus 59 p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 59 ARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred CCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 4667777888888765 499999999999999999998864
No 166
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00068 Score=64.05 Aligned_cols=148 Identities=8% Similarity=0.073 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEe--CCCcCc
Q 038724 7 FYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER-------------------PGFDVVIWVVV--SKELKL 64 (483)
Q Consensus 7 ~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~~v~~--~~~~~~ 64 (483)
-+.+.+.+..+.. .-+.++|+.|+||+++|.+++...--.. .|-| ..++.. +....+
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~I~i 89 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD-FHILEPIDNKDIGV 89 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEccccCCCCCH
Confidence 4567777777654 5677999999999999999887652110 1222 223321 222233
Q ss_pred cchh---HHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccCChH
Q 038724 65 ETSQ---DDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQ 124 (483)
Q Consensus 65 ~~~~---~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~ 124 (483)
.++. +.+ ...+++-++|+|+++... ....+...+-+...+..+|++|.+..-. +.+++++
T Consensus 90 d~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~ 169 (325)
T PRK06871 90 DQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQ 169 (325)
T ss_pred HHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHH
Confidence 3332 333 445777888999998664 3455555555545566666666554332 8889999
Q ss_pred HHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 125 ESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 125 ~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
++.+.+....... ...+...+..++|.|...
T Consensus 170 ~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 170 QALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 9988887654211 123566788899999633
No 167
>PTZ00202 tuzin; Provisional
Probab=97.75 E-value=0.00012 Score=70.13 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=37.8
Q ss_pred CCChhHHHHHHHHHhcC---CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKK---DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~---~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|||++++.++.+.|.+. ..+++.|+|++|+|||||++.+....
T Consensus 265 VGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 265 VSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 79999999999999642 34689999999999999999998765
No 168
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.6e-05 Score=82.75 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=73.9
Q ss_pred ccccccccceEEEEcccccccccc--CC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCc-cCCccccc
Q 038724 289 PSDALKWLGLRRMSLMNNQIKTLL--NT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLT-KLPSGISK 364 (483)
Q Consensus 289 ~~~~~~~~~l~~l~l~~~~~~~~~--~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~ 364 (483)
......++.|++|.+.+-.+..-. .. ..+++|.+||+|+.+++.+.. ++.+++|++|.+.+-.+.. ..-..+..
T Consensus 141 ~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G--IS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 141 KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG--ISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH--HhccccHHHHhccCCCCCchhhHHHHhc
Confidence 334446788888888875543221 11 467888888888888887733 7888888888887654332 11135778
Q ss_pred CcCCCEEeccCCCCCccCcc-------ccCCcCCCEEecCCCCC
Q 038724 365 LVSLQHLDISFTSTLELPEE-------LKALEKLKYLDMDDHQQ 401 (483)
Q Consensus 365 l~~L~~L~l~~~~i~~lp~~-------~~~l~~L~~L~l~~n~~ 401 (483)
|++|+.||+|...-..-+.- -..|++|+.||.|++.+
T Consensus 219 L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 88888888887764333311 23578888888887764
No 169
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.73 E-value=1.8e-05 Score=72.72 Aligned_cols=157 Identities=23% Similarity=0.284 Sum_probs=112.4
Q ss_pred cccceEEEEccccccccccCC------CCCCcccEEEecCCccccccchh-------------hhcCCCccEEEccCCcc
Q 038724 294 KWLGLRRMSLMNNQIKTLLNT------PSCPHLLTLFLNDNYLQDIKNGF-------------FQFMPCLKVLNLSYNRF 354 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~------~~~~~L~~L~l~~n~~~~~~~~~-------------~~~l~~L~~L~l~~n~~ 354 (483)
..++|+.++|++|.+..-... ..+..|+.|.|.+|++...-... ...-+.||++..+.|+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr- 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR- 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence 445899999999987532211 46889999999999875432222 2345789999999996
Q ss_pred CccCC-----cccccCcCCCEEeccCCCCCc-----cCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhcccc
Q 038724 355 LTKLP-----SGISKLVSLQHLDISFTSTLE-----LPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLE 424 (483)
Q Consensus 355 ~~~~p-----~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~ 424 (483)
++.-+ ..+...+.|+.+.+..|.|.. +-..+..+++|+.|||+.|.+... .+...-+.+..++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e-------gs~~LakaL~s~~ 241 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE-------GSVALAKALSSWP 241 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH-------HHHHHHHHhcccc
Confidence 44333 346667889999999887643 223478899999999999986533 2344556788899
Q ss_pred ccccceeeccCccc---------c-CCCCCcccccceeeeeeee
Q 038724 425 QLNIIRLTSCSLCS---------L-CGLPTVQCLTSRRLNLEVE 458 (483)
Q Consensus 425 ~L~~L~l~~~~l~~---------l-~~l~~l~~l~l~~~~~~~~ 458 (483)
+|+.|+++.|.+.. + ...|+|+.|.+.+|.+...
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 99999999998632 2 4478899999988888643
No 170
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.71 E-value=0.0006 Score=62.66 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=94.7
Q ss_pred hHHHHHHHHHhcC---CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCC---CCEEEEEEeCCCcCccchhHHh-------
Q 038724 5 KQFYQVWRFLVKK---DVGIIGLFGTGGVGKTTILKQINNRFCSERPG---FDVVIWVVVSKELKLETSQDDM------- 71 (483)
Q Consensus 5 ~~~~~l~~~l~~~---~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~---f~~~~~v~~~~~~~~~~~~~~i------- 71 (483)
+.++.+.+.+... +.+.+.|+|.+|.|||++++++.+.+....+. --.++.|.....++...+...|
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3455666666542 45679999999999999999999877322111 1257888888888888888877
Q ss_pred -----------------hhcCCcEEEEEcCCCCc-----c---ccccccCCCCCCCCCCEEEEecCChhhh---------
Q 038724 72 -----------------ILSTKKFLLLLDDLWET-----I---DLSKIGVPLPSQKIVSKVVFTTHSEEVC--------- 117 (483)
Q Consensus 72 -----------------~l~~~~~LlvlDdv~~~-----~---~~~~l~~~~~~~~~gs~ilvTtR~~~~~--------- 117 (483)
.-.-+--+||+|++.+. . ..-.....+.+.-+-+-|.+-|++...+
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 11123447889999764 1 1111222232222335566666554443
Q ss_pred ------hccCCh-HHHHHHHHHHhcCCcc--cCCCCchhHHHHHHhHcCCchHHHH
Q 038724 118 ------VDCFTP-QESWQVFQMKVGNETL--VSHPAIHKPAKMVAKDCGGLPLALT 164 (483)
Q Consensus 118 ------l~~L~~-~~a~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~c~g~Plal~ 164 (483)
+..... ++...|+......-.. ...-...+.++.|...++|+.--+.
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 333332 3445555443321111 1123446778999999999875543
No 171
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.71 E-value=9.8e-06 Score=66.45 Aligned_cols=61 Identities=26% Similarity=0.343 Sum_probs=38.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc--CccchhHHh-------hhcCCcEEEEEcCCCCc
Q 038724 22 IGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL--KLETSQDDM-------ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~--~~~~~~~~i-------~l~~~~~LlvlDdv~~~ 88 (483)
|.|+|++|+|||++|+.+++.. . ++ .+.++.+.-. ...+....+ ....++.++++||++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~--~~-~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---G--FP-FIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---T--SE-EEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhc---c--cc-cccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 5799999999999999999987 2 22 3445443322 111111222 22235899999999644
No 172
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.70 E-value=0.00011 Score=62.44 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=72.2
Q ss_pred CChhHHHHHHHHHhcCCeE-EEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCEEEEEEeCCC-
Q 038724 2 ENPKQFYQVWRFLVKKDVG-IIGLFGTGGVGKTTILKQINNRFCSER------------------PGFDVVIWVVVSKE- 61 (483)
Q Consensus 2 gr~~~~~~l~~~l~~~~~~-~v~i~G~~GiGKTtLa~~~~~~~~~~~------------------~~f~~~~~v~~~~~- 61 (483)
|-++..+.+.+.+..+..+ .+.++|+.|+||+++|.++++..-... .|.| ..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEeccccc
Confidence 5677888999999888765 579999999999999999887662111 1223 455544432
Q ss_pred --cCccchhHHh------hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCChhh
Q 038724 62 --LKLETSQDDM------ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHSEEV 116 (483)
Q Consensus 62 --~~~~~~~~~i------~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 116 (483)
....++..-+ ...+..-++|+||++.. +....++..+-+....+.+|++|++...
T Consensus 80 ~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 80 KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 3343333222 44467889999999865 3345555555444556888888877643
No 173
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.68 E-value=0.00017 Score=73.11 Aligned_cols=140 Identities=16% Similarity=0.107 Sum_probs=82.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh----------hhcCCcEEEEEcCCCCcc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM----------ILSTKKFLLLLDDLWETI 89 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i----------~l~~~~~LlvlDdv~~~~ 89 (483)
..+.|+|..|+|||.|+.++++.... ...-..++|++...-. .++...+ ..+ +.=+|||||+....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yitaeef~--~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~ 390 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSSEEFT--NEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLE 390 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHHHHH--HHHHHHHHhccHHHHHHHhh-cCCEEEEehhcccc
Confidence 35899999999999999999997721 1112335677643211 1111111 111 22478899996442
Q ss_pred c---c-ccccCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCcccCCCCc
Q 038724 90 D---L-SKIGVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNETLVSHPAI 145 (483)
Q Consensus 90 ~---~-~~l~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~ 145 (483)
. + +.+...+.. ..++..||+||....-. +++.+.+.-.+++.+.+..... .-.
T Consensus 391 gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l---~l~ 467 (617)
T PRK14086 391 DKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL---NAP 467 (617)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC---CCC
Confidence 1 1 112222211 12356688888753211 7778888888899888755442 233
Q ss_pred hhHHHHHHhHcCCchHHHHHH
Q 038724 146 HKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 146 ~~~~~~i~~~c~g~Plal~~~ 166 (483)
.++.+-|++.+.+..-.+..+
T Consensus 468 ~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 468 PEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHHHHHhccCCHHHHHHH
Confidence 566788888877765555433
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.67 E-value=8.7e-05 Score=61.39 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=42.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccch-------------------hHHh---hhcCCc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETS-------------------QDDM---ILSTKK 77 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~-------------------~~~i---~l~~~~ 77 (483)
+.+.|+|++|+||||+|+.++... ......++++..+........ ...+ ....+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999987 222233555544432221111 1111 222335
Q ss_pred EEEEEcCCCCccc
Q 038724 78 FLLLLDDLWETID 90 (483)
Q Consensus 78 ~LlvlDdv~~~~~ 90 (483)
.++++|+++....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 9999999987644
No 175
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0013 Score=62.86 Aligned_cols=149 Identities=9% Similarity=0.010 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccC-------------------CCCCCEEEEEEeCC---Cc
Q 038724 6 QFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSE-------------------RPGFDVVIWVVVSK---EL 62 (483)
Q Consensus 6 ~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~-------------------~~~f~~~~~v~~~~---~~ 62 (483)
.-+++.+.+..++. .-+.++|+.|+||+++|.+++...--. ..|-| ..++.-.. ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I 88 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLTPEKGKSSL 88 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecccccccC
Confidence 34567777776654 567899999999999999987765210 11223 23343221 12
Q ss_pred Ccc---chhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccCC
Q 038724 63 KLE---TSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFT 122 (483)
Q Consensus 63 ~~~---~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~ 122 (483)
.+. ++.+.+ ...+++-++|+|+++... ....+...+-+...++.+|++|.+.... +.+++
T Consensus 89 ~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~ 168 (334)
T PRK07993 89 GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPP 168 (334)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCC
Confidence 222 223333 445778899999998663 3455555555545566666666554332 77888
Q ss_pred hHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 123 PQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 123 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
++++.+.+....+ ...+.+..++..++|.|...
T Consensus 169 ~~~~~~~L~~~~~--------~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 169 EQYALTWLSREVT--------MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred HHHHHHHHHHccC--------CCHHHHHHHHHHcCCCHHHH
Confidence 8888877754321 11234677889999999643
No 176
>PRK08118 topology modulation protein; Reviewed
Probab=97.64 E-value=3.6e-05 Score=65.78 Aligned_cols=36 Identities=31% Similarity=0.610 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 21 IIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.|.|+|++|+||||||+.+++......-+|+..+|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 589999999999999999999873333567777753
No 177
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0015 Score=62.83 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhcC------C---eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcC
Q 038724 5 KQFYQVWRFLVKK------D---VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILST 75 (483)
Q Consensus 5 ~~~~~l~~~l~~~------~---~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~ 75 (483)
+.++.+.+.+... + -|=..++||+|.|||++..++|+.. .|+ ++-+.++.-.+-.++-+-+.-..
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-----~yd-IydLeLt~v~~n~dLr~LL~~t~ 285 (457)
T KOG0743|consen 212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-----NYD-IYDLELTEVKLDSDLRHLLLATP 285 (457)
T ss_pred HHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-----CCc-eEEeeeccccCcHHHHHHHHhCC
Confidence 4456666666542 1 2346899999999999999999977 555 34455555555555444445567
Q ss_pred CcEEEEEcCCCCccccc------------------------cccCCCCCCCCCCEEEE-ecCChhhh-------------
Q 038724 76 KKFLLLLDDLWETIDLS------------------------KIGVPLPSQKIVSKVVF-TTHSEEVC------------- 117 (483)
Q Consensus 76 ~~~LlvlDdv~~~~~~~------------------------~l~~~~~~~~~gs~ilv-TtR~~~~~------------- 117 (483)
.+.+|||.|++..-++. .+...+...+ +=||+| ||-.....
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg-~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG-DERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC-CceEEEEecCChhhcCHhhcCCCcceeE
Confidence 78888899997441111 0111111222 235554 77655443
Q ss_pred --hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHh
Q 038724 118 --VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAM 170 (483)
Q Consensus 118 --l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l 170 (483)
++--+.+....|+.++.+.+. .+..+.+|.+...+.-+.=..+++.+
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 666778888888888875432 24456666665566555545555444
No 178
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0016 Score=61.33 Aligned_cols=149 Identities=12% Similarity=0.045 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccC------------------CCCCCEEEEEEeC---CCcC
Q 038724 6 QFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSE------------------RPGFDVVIWVVVS---KELK 63 (483)
Q Consensus 6 ~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~------------------~~~f~~~~~v~~~---~~~~ 63 (483)
.-+.+.+.+..++. ..+.++|+.|+||+++|.++++..--. ..|.| ..|+... +...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I~ 89 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcCC
Confidence 34566777766654 468899999999999999987655211 11223 3344322 2233
Q ss_pred ccchhH---Hh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhh-h-----------hccCCh
Q 038724 64 LETSQD---DM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEV-C-----------VDCFTP 123 (483)
Q Consensus 64 ~~~~~~---~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~-~-----------l~~L~~ 123 (483)
++++.. .+ ...++.-++|+|+++... ....+...+-+...++.+|++|.+... . +.++++
T Consensus 90 vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~ 169 (319)
T PRK06090 90 VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPST 169 (319)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCH
Confidence 333322 11 344667788999998663 345555555554555666666555433 2 888899
Q ss_pred HHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 124 QESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 124 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
+++.+.+.... . . ..+.++..++|.|+....+
T Consensus 170 ~~~~~~L~~~~---~----~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 170 AQAMQWLKGQG---I----T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHHHHHHcC---C----c----hHHHHHHHcCCCHHHHHHH
Confidence 98888876431 1 1 2456788999999876433
No 179
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=9.8e-06 Score=64.30 Aligned_cols=90 Identities=31% Similarity=0.432 Sum_probs=79.4
Q ss_pred cccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 294 KWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
....+...++++|.++..|+. ..++.+..|++++|.+..+|.. +..++.|+.|+++.|+ +...|.-+..|.+|-+|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCc-cccchHHHHHHHhHHHh
Confidence 345688899999999998876 4567899999999999999988 8999999999999997 67788888899999999
Q ss_pred eccCCCCCccCccc
Q 038724 372 DISFTSTLELPEEL 385 (483)
Q Consensus 372 ~l~~~~i~~lp~~~ 385 (483)
+..+|.+..+|-.+
T Consensus 129 ds~~na~~eid~dl 142 (177)
T KOG4579|consen 129 DSPENARAEIDVDL 142 (177)
T ss_pred cCCCCccccCcHHH
Confidence 99999999998763
No 180
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00035 Score=69.06 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=53.8
Q ss_pred CChhHHHHHHHHHhc------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEE------EEeCCCcC
Q 038724 2 ENPKQFYQVWRFLVK------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIW------VVVSKELK 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~------v~~~~~~~ 63 (483)
|.++.+.+|.+.+.. ...|=|.++|++|+|||.||++++.+. .-.|-.+.- ++-.....
T Consensus 194 G~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf~~isApeivSGvSGESEkk 270 (802)
T KOG0733|consen 194 GLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPFLSISAPEIVSGVSGESEKK 270 (802)
T ss_pred ChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCceEeecchhhhcccCcccHHH
Confidence 567778888777753 245668999999999999999999987 223311110 00011112
Q ss_pred ccchhHHhhhcCCcEEEEEcCCCCc
Q 038724 64 LETSQDDMILSTKKFLLLLDDLWET 88 (483)
Q Consensus 64 ~~~~~~~i~l~~~~~LlvlDdv~~~ 88 (483)
++++..+ +....+|++++|+++-.
T Consensus 271 iRelF~~-A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 271 IRELFDQ-AKSNAPCIVFIDEIDAI 294 (802)
T ss_pred HHHHHHH-HhccCCeEEEeeccccc
Confidence 3333322 67789999999999744
No 181
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.58 E-value=0.00011 Score=73.95 Aligned_cols=65 Identities=25% Similarity=0.419 Sum_probs=53.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh--------hh--cCCcEEEEEcCCCC
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM--------IL--STKKFLLLLDDLWE 87 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i--------~l--~~~~~LlvlDdv~~ 87 (483)
.-++..++|++|+||||||..++++. .|. ++=|.+|+..+...+-..| .+ .+++..+|+|.++-
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GYs-VvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GYS-VVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cce-EEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 45789999999999999999999976 443 6678899999888888888 23 27888999999975
Q ss_pred c
Q 038724 88 T 88 (483)
Q Consensus 88 ~ 88 (483)
.
T Consensus 399 a 399 (877)
T KOG1969|consen 399 A 399 (877)
T ss_pred C
Confidence 4
No 182
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.57 E-value=0.0027 Score=61.10 Aligned_cols=166 Identities=16% Similarity=0.243 Sum_probs=104.2
Q ss_pred ChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCEEEEEEeCCCcC-------ccchh------
Q 038724 3 NPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTIL-KQINNRFCSERPGFDVVIWVVVSKELK-------LETSQ------ 68 (483)
Q Consensus 3 r~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa-~~~~~~~~~~~~~f~~~~~v~~~~~~~-------~~~~~------ 68 (483)
|.+.+++|..||.+..-..|.|.||.|.||+.|+ .++.++. ++ ++.+++.+-.. +..+.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r---~~----vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR---KN----VLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC---CC----EEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 7788999999999987789999999999999999 6665543 11 34443321111 01111
Q ss_pred -----------------------------------HHh-----------hhc---------------------CCcEEEE
Q 038724 69 -----------------------------------DDM-----------ILS---------------------TKKFLLL 81 (483)
Q Consensus 69 -----------------------------------~~i-----------~l~---------------------~~~~Llv 81 (483)
..| .+. .++=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 111 111 1245899
Q ss_pred EcCCCCccc-----cccc---cCCCCCCCCCCEEEEecCChhhh----------------hccCChHHHHHHHHHHhcCC
Q 038724 82 LDDLWETID-----LSKI---GVPLPSQKIVSKVVFTTHSEEVC----------------VDCFTPQESWQVFQMKVGNE 137 (483)
Q Consensus 82 lDdv~~~~~-----~~~l---~~~~~~~~~gs~ilvTtR~~~~~----------------l~~L~~~~a~~l~~~~~~~~ 137 (483)
|||...... |+.+ ...+- ..+--.||+.|-+.... +.-.+++.|..+........
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 999853321 1111 11111 12335788888776554 77788999999998887543
Q ss_pred ccc------------C-----CCCchhHHHHHHhHcCCchHHHHHHHHHhcCCCCH
Q 038724 138 TLV------------S-----HPAIHKPAKMVAKDCGGLPLALTIVGRAMAYKKTP 176 (483)
Q Consensus 138 ~~~------------~-----~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~ 176 (483)
... . ...........++..||==.-+..+++.++...++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 233 TEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 100 0 01344556778889999999999999999865444
No 183
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.00019 Score=71.13 Aligned_cols=133 Identities=12% Similarity=0.080 Sum_probs=74.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh---------hhcCCcEEEEEcCCCCccc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM---------ILSTKKFLLLLDDLWETID 90 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i---------~l~~~~~LlvlDdv~~~~~ 90 (483)
..+.|+|++|+|||+|++++++... .....++|++...-. ..+...+ ..-...-++++||+.....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~~~f~--~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRSELFT--EHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeHHHHH--HHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC
Confidence 5689999999999999999999872 122335666543110 1111111 1112344888999865421
Q ss_pred ----cccccCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCcccCCCCch
Q 038724 91 ----LSKIGVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNETLVSHPAIH 146 (483)
Q Consensus 91 ----~~~l~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~ 146 (483)
.+.+...+.. ...|..||+||....-. +.+++.++-.+++...+..... .-..
T Consensus 217 k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~---~l~~ 293 (445)
T PRK12422 217 KGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSI---RIEE 293 (445)
T ss_pred ChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCC---CCCH
Confidence 1122211111 11345688877542111 6778888888888877754331 2234
Q ss_pred hHHHHHHhHcCCch
Q 038724 147 KPAKMVAKDCGGLP 160 (483)
Q Consensus 147 ~~~~~i~~~c~g~P 160 (483)
+....|++.+.+.-
T Consensus 294 evl~~la~~~~~di 307 (445)
T PRK12422 294 TALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHhcCCCH
Confidence 55666777766544
No 184
>PRK07261 topology modulation protein; Provisional
Probab=97.56 E-value=0.00012 Score=62.88 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=39.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh--hhcCCcEEEEEcCCCC
Q 038724 21 IIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM--ILSTKKFLLLLDDLWE 87 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i--~l~~~~~LlvlDdv~~ 87 (483)
.|.|+|++|+||||||++++.......-+.|...|-......+..++...+ .+.+.+ .|+|....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--wIidg~~~ 68 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD--WIIDGNYS 68 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC--EEEcCcch
Confidence 489999999999999999987752222244555564322223333333333 344444 67777644
No 185
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=5.2e-05 Score=68.20 Aligned_cols=84 Identities=26% Similarity=0.342 Sum_probs=46.4
Q ss_pred CCCcccEEEecCCcccccc--chhhhcCCCccEEEccCCccCccCCccc-ccCcCCCEEeccCCC--CCccCccccCCcC
Q 038724 316 SCPHLLTLFLNDNYLQDIK--NGFFQFMPCLKVLNLSYNRFLTKLPSGI-SKLVSLQHLDISFTS--TLELPEELKALEK 390 (483)
Q Consensus 316 ~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~~~--i~~lp~~~~~l~~ 390 (483)
.+.+++.+||.+|.++... ..++.++|.|++|+++.|++...+- .. ..+.+|++|-|.++. .+.....+..++.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 4556666677777665432 2335566777777777765332221 12 345666777666665 2333333555556
Q ss_pred CCEEecCCCC
Q 038724 391 LKYLDMDDHQ 400 (483)
Q Consensus 391 L~~L~l~~n~ 400 (483)
++.|.++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6666666553
No 186
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.0021 Score=61.88 Aligned_cols=164 Identities=16% Similarity=0.216 Sum_probs=93.6
Q ss_pred CCChhHHHHHHHHHhc----CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh-----
Q 038724 1 IENPKQFYQVWRFLVK----KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM----- 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~----~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i----- 71 (483)
+||+.+++.+.+++.. ...+.+.|.|.+|.|||.+...++.+....... ..++++....-....++...|
T Consensus 153 ~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~~~~ 231 (529)
T KOG2227|consen 153 KGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFSSLL 231 (529)
T ss_pred cchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHHHHH
Confidence 5999999999999874 356789999999999999999999887322222 234566433212222222222
Q ss_pred --------------------hhcCCcEEEEEcCCCCc----cccccccCCCCCCCCCCEEEEec---------CChhhh-
Q 038724 72 --------------------ILSTKKFLLLLDDLWET----IDLSKIGVPLPSQKIVSKVVFTT---------HSEEVC- 117 (483)
Q Consensus 72 --------------------~l~~~~~LlvlDdv~~~----~~~~~l~~~~~~~~~gs~ilvTt---------R~~~~~- 117 (483)
.-....+++|+|..+.- ...-.....+++.. ++++++-- |.-...
T Consensus 232 q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp-~sr~iLiGiANslDlTdR~LprL~ 310 (529)
T KOG2227|consen 232 QDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLP-NSRIILIGIANSLDLTDRFLPRLN 310 (529)
T ss_pred HHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCC-cceeeeeeehhhhhHHHHHhhhhh
Confidence 22235799999998632 11111222334332 34444321 111111
Q ss_pred -----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHc----CCchHHHHHHHH
Q 038724 118 -----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDC----GGLPLALTIVGR 168 (483)
Q Consensus 118 -----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c----~g~Plal~~~~~ 168 (483)
..|.+.++..+++.......... ......++.++++| |.+--|+.+.-+
T Consensus 311 ~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~--~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 311 LDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS--IFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred hccCCCCceeeecCCCHHHHHHHHHHHHhccccc--ccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 67889999999999887554421 12223344444444 444444444443
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0014 Score=63.92 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=48.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccc------hhHHh--hhcCCcEEEEEcCCCCcc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLET------SQDDM--ILSTKKFLLLLDDLWETI 89 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~------~~~~i--~l~~~~~LlvlDdv~~~~ 89 (483)
+...+.+.|++|.|||+||..++.. ..|..+--++..+-....+ +.... +.+..-..||+||+...-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLi 611 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLL 611 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhh
Confidence 4567889999999999999999874 4777655554333222222 22222 667788899999997665
Q ss_pred ccccc
Q 038724 90 DLSKI 94 (483)
Q Consensus 90 ~~~~l 94 (483)
+|-.+
T Consensus 612 D~vpI 616 (744)
T KOG0741|consen 612 DYVPI 616 (744)
T ss_pred ccccc
Confidence 55443
No 188
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.54 E-value=0.00017 Score=63.09 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=57.5
Q ss_pred ChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC----CCcC--ccchhHHh-----
Q 038724 3 NPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVS----KELK--LETSQDDM----- 71 (483)
Q Consensus 3 r~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~----~~~~--~~~~~~~i----- 71 (483)
+........+++. ...+|.+.|++|.|||.||.+.+-+. -..+.|+.++++... ++.. .-++.+++
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 4455666666777 34599999999999999999998776 345788888777321 1100 00000111
Q ss_pred ------------------------------hhcCC---cEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCCh
Q 038724 72 ------------------------------ILSTK---KFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHSE 114 (483)
Q Consensus 72 ------------------------------~l~~~---~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 114 (483)
.++|+ ..+||+|++.+. .++..+... .+.+||++++--..
T Consensus 82 p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 82 PIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 45554 459999999655 345555444 35689999985443
No 189
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=0.00015 Score=74.33 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHHHhcC-----CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKK-----DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~-----~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|-++.++++..++... ..++++|+|++|+||||+++.++...
T Consensus 87 ~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 87 AVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred cCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46678888999998753 23579999999999999999999866
No 190
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.53 E-value=0.00024 Score=66.39 Aligned_cols=86 Identities=17% Similarity=0.337 Sum_probs=64.3
Q ss_pred CChhHHHHHHHHHhcCCe---EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh-------
Q 038724 2 ENPKQFYQVWRFLVKKDV---GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM------- 71 (483)
Q Consensus 2 gr~~~~~~l~~~l~~~~~---~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i------- 71 (483)
+|+.++..+...+.+... ..|.|+|-+|.|||.+.+++.+.. ..+ .+|+++-+.+..+.+.+.|
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~~---~vw~n~~ecft~~~lle~IL~~~~~~ 83 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NLE---NVWLNCVECFTYAILLEKILNKSQLA 83 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CCc---ceeeehHHhccHHHHHHHHHHHhccC
Confidence 689999999999987643 456899999999999999999876 222 4688766666555555544
Q ss_pred ---------------------------hhcCCcEEEEEcCCCCcccccc
Q 038724 72 ---------------------------ILSTKKFLLLLDDLWETIDLSK 93 (483)
Q Consensus 72 ---------------------------~l~~~~~LlvlDdv~~~~~~~~ 93 (483)
..+++.++|||||++...+.+.
T Consensus 84 d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a 132 (438)
T KOG2543|consen 84 DKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDA 132 (438)
T ss_pred CCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccch
Confidence 2335789999999987655443
No 191
>PRK08181 transposase; Validated
Probab=97.52 E-value=7.8e-05 Score=68.50 Aligned_cols=66 Identities=26% Similarity=0.247 Sum_probs=42.1
Q ss_pred HHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh-------------hhcCCcE
Q 038724 12 RFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM-------------ILSTKKF 78 (483)
Q Consensus 12 ~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i-------------~l~~~~~ 78 (483)
+|+... .-+.++|++|+|||.||.++++... .....+.|+++. ++...+ ..-.+.=
T Consensus 101 ~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~~------~L~~~l~~a~~~~~~~~~l~~l~~~d 169 (269)
T PRK08181 101 SWLAKG--ANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRTT------DLVQKLQVARRELQLESAIAKLDKFD 169 (269)
T ss_pred HHHhcC--ceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeHH------HHHHHHHHHHhCCcHHHHHHHHhcCC
Confidence 455533 4699999999999999999998772 222345666542 222222 1112445
Q ss_pred EEEEcCCCCc
Q 038724 79 LLLLDDLWET 88 (483)
Q Consensus 79 LlvlDdv~~~ 88 (483)
||||||+...
T Consensus 170 LLIIDDlg~~ 179 (269)
T PRK08181 170 LLILDDLAYV 179 (269)
T ss_pred EEEEeccccc
Confidence 9999999533
No 192
>PRK08116 hypothetical protein; Validated
Probab=97.52 E-value=7.1e-05 Score=69.18 Aligned_cols=89 Identities=26% Similarity=0.215 Sum_probs=51.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-------------ccchhHHhhhcCCcEEEEEcCCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK-------------LETSQDDMILSTKKFLLLLDDLW 86 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~-------------~~~~~~~i~l~~~~~LlvlDdv~ 86 (483)
..+.++|.+|+|||.||.++++... .....++|++++.-.. ..++.. .+.+-. ||||||+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~--~l~~~d-lLviDDlg 188 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIR--SLVNAD-LLILDDLG 188 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHH--HhcCCC-EEEEeccc
Confidence 4589999999999999999999872 2234467776533110 001111 233333 89999994
Q ss_pred Cc--cccc--cccCCCCC-CCCCCEEEEecCCh
Q 038724 87 ET--IDLS--KIGVPLPS-QKIVSKVVFTTHSE 114 (483)
Q Consensus 87 ~~--~~~~--~l~~~~~~-~~~gs~ilvTtR~~ 114 (483)
.. .+|. .+...+.. ..++..+|+||...
T Consensus 189 ~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 189 AERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 32 2222 12211211 12456788887654
No 193
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.50 E-value=0.0011 Score=61.37 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 5 KQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 5 ~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.++++..++..+ +.|.+.|++|+|||++|+++++..
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555555544 367799999999999999998754
No 194
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.00087 Score=66.66 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=100.3
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCC--EEEEE---------------EeCCC
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER-PGFD--VVIWV---------------VVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~f~--~~~~v---------------~~~~~ 61 (483)
||-+..+..|..++..+.. .-..+.|+.|+||||+|+.+++..--.. ...+ +.+.. +....
T Consensus 19 vGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn 98 (515)
T COG2812 19 VGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASN 98 (515)
T ss_pred cccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhc
Confidence 5777888888888887754 3567899999999999999887651110 1111 11111 11111
Q ss_pred c---CccchhHHh---hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEE-ecCChhhh-----------hccC
Q 038724 62 L---KLETSQDDM---ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVF-TTHSEEVC-----------VDCF 121 (483)
Q Consensus 62 ~---~~~~~~~~i---~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-TtR~~~~~-----------l~~L 121 (483)
. +.+++.+++ -..++.-+.|+|.|+-. ..+..+...+-........|+ ||-...+. ++.+
T Consensus 99 ~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri 178 (515)
T COG2812 99 TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRL 178 (515)
T ss_pred cChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCC
Confidence 1 223333333 46678889999999744 557777777754444454444 44444333 8889
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
+.++....+...+..+.. .-.++....|++...|...-.
T Consensus 179 ~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~Gs~RDa 217 (515)
T COG2812 179 DLEEIAKHLAAILDKEGI---NIEEDALSLIARAAEGSLRDA 217 (515)
T ss_pred CHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcCCChhhH
Confidence 999988888888876653 233455677777777755433
No 195
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=8.3e-06 Score=72.47 Aligned_cols=103 Identities=25% Similarity=0.221 Sum_probs=67.5
Q ss_pred CCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCc--cccCCcCCCEE
Q 038724 317 CPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPE--ELKALEKLKYL 394 (483)
Q Consensus 317 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L 394 (483)
+.+.+.|+..++.+.++.- ...|+.|++|.|+-|++..-- .+..+++|+.|.|+.|.|..+.. .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4566677777777666543 567788888888888643332 36777778888888887777653 26778888888
Q ss_pred ecCCCCCcCC-CCCCCCccchhhHhhhccccccccce
Q 038724 395 DMDDHQQVME-EGNCQSDDAESLLKEMLCLEQLNIIR 430 (483)
Q Consensus 395 ~l~~n~~~~~-p~~~~l~~~~~~~~~l~~l~~L~~L~ 430 (483)
.|..|.-... +. .-...-+..|++|++|+
T Consensus 94 WL~ENPCc~~ag~-------nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQ-------NYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccch-------hHHHHHHHHcccchhcc
Confidence 8888764433 11 22233456677777776
No 196
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.46 E-value=0.001 Score=62.69 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=75.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC---------cCccchhHHh----hhcCCcEEEEEcC
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE---------LKLETSQDDM----ILSTKKFLLLLDD 84 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~---------~~~~~~~~~i----~l~~~~~LlvlDd 84 (483)
.++.++|+|++|+|||.+|+++++.. .-.| +-++.++- ..++++.... ..++++++|+||+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el---g~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM---GIEP---IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc---CCCe---EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 56789999999999999999999987 2222 22322211 1122333222 2468999999999
Q ss_pred CCCcc------c--c------ccccCC--------CC------CCCCCCEEEEecCChhhh-------------hccCCh
Q 038724 85 LWETI------D--L------SKIGVP--------LP------SQKIVSKVVFTTHSEEVC-------------VDCFTP 123 (483)
Q Consensus 85 v~~~~------~--~------~~l~~~--------~~------~~~~gs~ilvTtR~~~~~-------------l~~L~~ 123 (483)
++... + . ..+... ++ ....+..||+||-..... +..-+.
T Consensus 221 IDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~ 300 (413)
T PLN00020 221 LDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 300 (413)
T ss_pred hhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCH
Confidence 96331 0 0 111110 11 123456778888666543 323455
Q ss_pred HHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH
Q 038724 124 QESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL 161 (483)
Q Consensus 124 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 161 (483)
++-.+++..+...... ......++++...|-|+
T Consensus 301 e~R~eIL~~~~r~~~l-----~~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 301 EDRIGVVHGIFRDDGV-----SREDVVKLVDTFPGQPL 333 (413)
T ss_pred HHHHHHHHHHhccCCC-----CHHHHHHHHHcCCCCCc
Confidence 6666666665544331 12445566666666654
No 197
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.45 E-value=0.00016 Score=59.93 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=42.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh---------------hhcCCcEEEEEcCCC
Q 038724 22 IGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM---------------ILSTKKFLLLLDDLW 86 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i---------------~l~~~~~LlvlDdv~ 86 (483)
|.++|++|+|||+||+.+++.. . ....-+.++...+..++.... .--.+..++|||+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 7899999999999999999877 1 123445666666655555444 111378899999997
Q ss_pred Cc
Q 038724 87 ET 88 (483)
Q Consensus 87 ~~ 88 (483)
..
T Consensus 76 ~a 77 (139)
T PF07728_consen 76 RA 77 (139)
T ss_dssp G-
T ss_pred cC
Confidence 43
No 198
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0039 Score=59.38 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=51.9
Q ss_pred hcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhh-h-----------hccCChHHHHHHHHHHhcCCc
Q 038724 73 LSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEV-C-----------VDCFTPQESWQVFQMKVGNET 138 (483)
Q Consensus 73 l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~-~-----------l~~L~~~~a~~l~~~~~~~~~ 138 (483)
..+++-++|+|+++... ....+...+-+..+++.+|++|.+... . +.+++.++..+.+.... .
T Consensus 129 ~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~ 205 (342)
T PRK06964 129 HRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V 205 (342)
T ss_pred ccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C
Confidence 44667788899998663 355565566555556666655554433 2 88899999988886641 1
Q ss_pred ccCCCCchhHHHHHHhHcCCchHHHH
Q 038724 139 LVSHPAIHKPAKMVAKDCGGLPLALT 164 (483)
Q Consensus 139 ~~~~~~~~~~~~~i~~~c~g~Plal~ 164 (483)
.. .+.++..++|.|....
T Consensus 206 ----~~----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 206 ----AD----ADALLAEAGGAPLAAL 223 (342)
T ss_pred ----Ch----HHHHHHHcCCCHHHHH
Confidence 11 2345778899997543
No 199
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.0012 Score=57.81 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=56.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcCCcEEEEEcCCCC---ccccccc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILSTKKFLLLLDDLWE---TIDLSKI 94 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~~~~LlvlDdv~~---~~~~~~l 94 (483)
...-|.++|..|.|||.|++++.+.+ ....--.+=|+-.+-.++..+...+.....++.|+.||..= .+.+..+
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e~---~~~glrLVEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~L 160 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLNEY---ADEGLRLVEVDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKAL 160 (287)
T ss_pred cccceEEecCCCCChHHHHHHHHHHH---HhcCCeEEEEcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHH
Confidence 45679999999999999999999987 22222233333334467888888889999999999999952 2335555
Q ss_pred cCCCC
Q 038724 95 GVPLP 99 (483)
Q Consensus 95 ~~~~~ 99 (483)
+..+.
T Consensus 161 Ks~Le 165 (287)
T COG2607 161 KSALE 165 (287)
T ss_pred HHHhc
Confidence 55443
No 200
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.43 E-value=0.00034 Score=69.93 Aligned_cols=133 Identities=18% Similarity=0.174 Sum_probs=71.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC--------C-cCccchhHHhhhcCCcEEEEEcCCCCcc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK--------E-LKLETSQDDMILSTKKFLLLLDDLWETI 89 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~--------~-~~~~~~~~~i~l~~~~~LlvlDdv~~~~ 89 (483)
.+-|.++|++|+|||.+|+++++.. ...| +-+..+. . ..++++.. ..-...+++|++|+++...
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~~l~~~~vGese~~l~~~f~-~A~~~~P~IL~IDEID~~~ 331 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVGKLFGGIVGESESRMRQMIR-IAEALSPCILWIDEIDKAF 331 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhHHhcccccChHHHHHHHHHH-HHHhcCCcEEEehhhhhhh
Confidence 4568999999999999999999976 2222 1122111 0 11112211 1345689999999997431
Q ss_pred c--------------cccccCCCCCCCCCCEEEEecCChhhh---------------hccCChHHHHHHHHHHhcCCccc
Q 038724 90 D--------------LSKIGVPLPSQKIVSKVVFTTHSEEVC---------------VDCFTPQESWQVFQMKVGNETLV 140 (483)
Q Consensus 90 ~--------------~~~l~~~~~~~~~gs~ilvTtR~~~~~---------------l~~L~~~~a~~l~~~~~~~~~~~ 140 (483)
. +..+...+.....+.-||.||...... ++..+.++-.++|..+.......
T Consensus 332 ~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~ 411 (489)
T CHL00195 332 SNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK 411 (489)
T ss_pred ccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC
Confidence 1 001111111222334455566544321 55567777788887776443211
Q ss_pred CCCCchhHHHHHHhHcCCch
Q 038724 141 SHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 141 ~~~~~~~~~~~i~~~c~g~P 160 (483)
. ......+.+++.+.|.-
T Consensus 412 ~--~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 412 S--WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred c--ccccCHHHHHhhcCCCC
Confidence 0 11223556666666544
No 201
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.42 E-value=0.0004 Score=62.19 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe
Q 038724 21 IIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVV 58 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~ 58 (483)
.++|.|.+|.||||++..+.... ...|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 67899999999999999999877 667887777743
No 202
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.40 E-value=0.00038 Score=75.26 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHhcC---------CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKK---------DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.+..++.+.+.+... ...++.++|++|+|||++|+.+++..
T Consensus 568 ~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 568 VGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred CCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 58888899888888642 13578899999999999999999876
No 203
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.39 E-value=0.0001 Score=65.37 Aligned_cols=59 Identities=39% Similarity=0.495 Sum_probs=27.6
Q ss_pred ccceEEEEccccccccccCCCCCCcccEEEecCCc--cccccchhhhcCCCccEEEccCCc
Q 038724 295 WLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNY--LQDIKNGFFQFMPCLKVLNLSYNR 353 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~ 353 (483)
+..++.+++.+..++.+...+.+++|+.|.+|.|. +..-.+.....+++|++|++++|+
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 33444555555555555444555555555555552 221111112333555555555554
No 204
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00055 Score=65.74 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=73.1
Q ss_pred CCChhHHHHHHHHHhc-CCeEE-EEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEeCC
Q 038724 1 IENPKQFYQVWRFLVK-KDVGI-IGLFGTGGVGKTTILKQINNRFCSERP------------------GFDVVIWVVVSK 60 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-~~~~~-v~i~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~~v~~~~ 60 (483)
+|-+..+.++..+... ++.+. +.++|++|+||||+|.++++....... ..+.+..+..++
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~ 83 (325)
T COG0470 4 VPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSD 83 (325)
T ss_pred ccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccc
Confidence 3556777788888874 44455 999999999999999999988731110 113355566665
Q ss_pred CcCc---cchhHHh-------hhcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCCh
Q 038724 61 ELKL---ETSQDDM-------ILSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSE 114 (483)
Q Consensus 61 ~~~~---~~~~~~i-------~l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~ 114 (483)
.... .+..+++ ...++.-++++|+++.... ...+...+......+.++++|...
T Consensus 84 ~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 84 LRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred cCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 5553 2333333 2337888999999986633 344444444445567777777644
No 205
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.37 E-value=0.00014 Score=58.55 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|.|++|+||||+|+.++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 206
>PRK06696 uridine kinase; Validated
Probab=97.37 E-value=0.00025 Score=63.90 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=36.5
Q ss_pred CChhHHHHHHHHHhc---CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 2 ENPKQFYQVWRFLVK---KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 2 gr~~~~~~l~~~l~~---~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
-|++.+++|.+.+.. +...+|+|.|.+|.||||+|+++++..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 478888999888863 467799999999999999999999876
No 207
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=1.4e-05 Score=71.87 Aligned_cols=146 Identities=19% Similarity=0.235 Sum_probs=71.3
Q ss_pred ccceEEEEccccccccccC--CCCCCcccEEEecCC-ccccc-cchhhhcCCCccEEEccCCccCccCCc-cccc-CcCC
Q 038724 295 WLGLRRMSLMNNQIKTLLN--TPSCPHLLTLFLNDN-YLQDI-KNGFFQFMPCLKVLNLSYNRFLTKLPS-GISK-LVSL 368 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~-l~~L 368 (483)
.++|+.+++.++++.+-.. .+.-.+|+.|+++.+ +++.. ..-.+.+++.|..|+++.|......-. .+.. -.+|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 4445555555555443211 123345666666654 23321 122345556666666666632211100 0000 1335
Q ss_pred CEEeccCCC----CCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccC------ccc
Q 038724 369 QHLDISFTS----TLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCS------LCS 438 (483)
Q Consensus 369 ~~L~l~~~~----i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~------l~~ 438 (483)
..|+++|+. ...+..-...+++|.+|||++|..+ ......++..++.|++|.++.|. +-.
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l----------~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~ 358 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML----------KNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE 358 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc----------CchHHHHHHhcchheeeehhhhcCCChHHeee
Confidence 555555543 1222111356677777777776543 23455566667777777777764 234
Q ss_pred cCCCCCcccccc
Q 038724 439 LCGLPTVQCLTS 450 (483)
Q Consensus 439 l~~l~~l~~l~l 450 (483)
+...|.|..|+.
T Consensus 359 l~s~psl~yLdv 370 (419)
T KOG2120|consen 359 LNSKPSLVYLDV 370 (419)
T ss_pred eccCcceEEEEe
Confidence 555566655554
No 208
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00043 Score=69.95 Aligned_cols=81 Identities=22% Similarity=0.252 Sum_probs=54.8
Q ss_pred CChhHHHHHHHHHhc------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccch--------
Q 038724 2 ENPKQFYQVWRFLVK------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETS-------- 67 (483)
Q Consensus 2 gr~~~~~~l~~~l~~------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~-------- 67 (483)
|.++.-++|.+.|.- -.-++++++||+|+|||.|++.+++.. ...| +-+++++-.|..++
T Consensus 327 GLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHRRTYI 400 (782)
T COG0466 327 GLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHRRTYI 400 (782)
T ss_pred CchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhcccccccc
Confidence 567777888887742 234699999999999999999999977 3343 22445544444332
Q ss_pred -------hHHh-hhcCCcEEEEEcCCCCc
Q 038724 68 -------QDDM-ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 68 -------~~~i-~l~~~~~LlvlDdv~~~ 88 (483)
.+.| ....+.=+++||.++..
T Consensus 401 GamPGrIiQ~mkka~~~NPv~LLDEIDKm 429 (782)
T COG0466 401 GAMPGKIIQGMKKAGVKNPVFLLDEIDKM 429 (782)
T ss_pred ccCChHHHHHHHHhCCcCCeEEeechhhc
Confidence 2233 34445568889999755
No 209
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.0081 Score=53.46 Aligned_cols=158 Identities=14% Similarity=0.202 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh--------------
Q 038724 6 QFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM-------------- 71 (483)
Q Consensus 6 ~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i-------------- 71 (483)
.+..+...+.+ +.+++.++|.-|.|||+++++..... . +.--+++.+. .+......+...+
T Consensus 39 ~l~~l~~~i~d-~qg~~~vtGevGsGKTv~~Ral~~s~-~--~d~~~~v~i~-~~~~s~~~~~~ai~~~l~~~p~~~~~~ 113 (269)
T COG3267 39 ALLMLHAAIAD-GQGILAVTGEVGSGKTVLRRALLASL-N--EDQVAVVVID-KPTLSDATLLEAIVADLESQPKVNVNA 113 (269)
T ss_pred HHHHHHHHHhc-CCceEEEEecCCCchhHHHHHHHHhc-C--CCceEEEEec-CcchhHHHHHHHHHHHhccCccchhHH
Confidence 34444444443 34699999999999999999766655 1 1111222221 1111122222211
Q ss_pred ------------hhcCCc-EEEEEcCCCCcc--ccccc--cCCCC-CCC-CCCEEEEec---CC----hhh---------
Q 038724 72 ------------ILSTKK-FLLLLDDLWETI--DLSKI--GVPLP-SQK-IVSKVVFTT---HS----EEV--------- 116 (483)
Q Consensus 72 ------------~l~~~~-~LlvlDdv~~~~--~~~~l--~~~~~-~~~-~gs~ilvTt---R~----~~~--------- 116 (483)
..+++| ..+++|++.... ..+.+ ...+- +.. .-+++++-- +. ...
T Consensus 114 ~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~i 193 (269)
T COG3267 114 VLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDI 193 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEE
Confidence 455666 999999986542 22222 11111 111 112333311 11 111
Q ss_pred --hhccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHH
Q 038724 117 --CVDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGR 168 (483)
Q Consensus 117 --~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~ 168 (483)
.+.|++.++...++............--..+....|.....|.|.++..++.
T Consensus 194 r~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 194 RIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 0889999988888887775443222223356677899999999999987763
No 210
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.33 E-value=6.9e-05 Score=61.95 Aligned_cols=105 Identities=12% Similarity=0.162 Sum_probs=61.4
Q ss_pred CCChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcCCcE
Q 038724 1 IENPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILSTKKF 78 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~~~~ 78 (483)
||+-..++++.+.+.. .....|.|+|..|+||+++|+.+++........|..+ ..... . .++.-+.+.-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~~a~~g 71 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLEQAKGG 71 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHHHCTTS
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHHHcCCC
Confidence 6888888988888875 3446789999999999999999988662222223211 11111 1 2222223666
Q ss_pred EEEEcCCCCccc--cccccCCCC-CCCCCCEEEEecCCh
Q 038724 79 LLLLDDLWETID--LSKIGVPLP-SQKIVSKVVFTTHSE 114 (483)
Q Consensus 79 LlvlDdv~~~~~--~~~l~~~~~-~~~~gs~ilvTtR~~ 114 (483)
-++|+|++.... ...+...+. ......|+|+||+..
T Consensus 72 tL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 72 TLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp EEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred EEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 678999976532 222322222 114568999998865
No 211
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.32 E-value=0.0016 Score=58.33 Aligned_cols=206 Identities=12% Similarity=0.095 Sum_probs=116.4
Q ss_pred CChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccC---CCCCCEEEEEEeCCC-----------------
Q 038724 2 ENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSE---RPGFDVVIWVVVSKE----------------- 61 (483)
Q Consensus 2 gr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~~f~~~~~v~~~~~----------------- 61 (483)
++++.-.++......++.+...++|++|.||-|.+..+.++...+ +-.-+..-|.+.+..
T Consensus 17 ~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitP 96 (351)
T KOG2035|consen 17 YHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITP 96 (351)
T ss_pred cHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeCh
Confidence 455666666666666778899999999999999998887776210 111233334432221
Q ss_pred ----cCcc----chhHHh------hhc-CCcE-EEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCC--hhhh----
Q 038724 62 ----LKLE----TSQDDM------ILS-TKKF-LLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHS--EEVC---- 117 (483)
Q Consensus 62 ----~~~~----~~~~~i------~l~-~~~~-LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~--~~~~---- 117 (483)
...+ +++.++ ..+ .+.| ++|+-.+++. +...++........+.+|+|+..-+ +.+.
T Consensus 97 SDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrS 176 (351)
T KOG2035|consen 97 SDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRS 176 (351)
T ss_pred hhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhh
Confidence 0112 222222 222 3344 5566666533 2223333333333445777764322 2222
Q ss_pred ------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhcCC----------CCHHHHHH
Q 038724 118 ------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMAYK----------KTPEEWKD 181 (483)
Q Consensus 118 ------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~----------~~~~~w~~ 181 (483)
+...+++|....+....-.++. .-..+.+++|+++++|+-.-.-.+-..++-+ -+.-+|+-
T Consensus 177 RCl~iRvpaps~eeI~~vl~~v~~kE~l---~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~ 253 (351)
T KOG2035|consen 177 RCLFIRVPAPSDEEITSVLSKVLKKEGL---QLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEI 253 (351)
T ss_pred heeEEeCCCCCHHHHHHHHHHHHHHhcc---cCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHH
Confidence 7889999999999998877663 2236789999999988653333333222211 24568998
Q ss_pred HHHHHHhcccCCCChHHHHHhhhcccCCC
Q 038724 182 AIEILMRSALQFPGINKVYYRLKFSFDRL 210 (483)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~l~~s~~~L 210 (483)
+................+..+-..=|+-|
T Consensus 254 ~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 254 YIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 88877666544444444444443334333
No 212
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00037 Score=67.74 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcC--------C-eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-------ccchh
Q 038724 5 KQFYQVWRFLVKK--------D-VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK-------LETSQ 68 (483)
Q Consensus 5 ~~~~~l~~~l~~~--------~-~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~-------~~~~~ 68 (483)
.++++|++.|.+. . ++=|.++|++|.|||-||++++-.. . -.| |...+..|+ .+++.
T Consensus 314 ~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-~--VPF----F~~sGSEFdEm~VGvGArRVR 386 (752)
T KOG0734|consen 314 QELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-G--VPF----FYASGSEFDEMFVGVGARRVR 386 (752)
T ss_pred HHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-C--CCe----EeccccchhhhhhcccHHHHH
Confidence 4678888888763 2 3458999999999999999998876 2 222 223333333 22222
Q ss_pred HHh--hhcCCcEEEEEcCCCCc
Q 038724 69 DDM--ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 69 ~~i--~l~~~~~LlvlDdv~~~ 88 (483)
.-+ +-+..+|.|+||.++..
T Consensus 387 dLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 387 DLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred HHHHHHHhcCCeEEEEechhhh
Confidence 222 66788999999999744
No 213
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.0007 Score=65.26 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=67.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC--EEEEEEeCCCcCccchhHHh--------hhcCCcEEEEEcCCCCc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFD--VVIWVVVSKELKLETSQDDM--------ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~~v~~~~~~~~~~~~~~i--------~l~~~~~LlvlDdv~~~ 88 (483)
...+.|+|..|.|||-|++++.+.. ..... .+++++... -..++...+ +-.-.-=++++||++-.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~se~--f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l 187 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLTSED--FTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFL 187 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEeccHHH--HHHHHHHHHHhhhHHHHHHhhccCeeeechHhHh
Confidence 5689999999999999999999987 33333 344443221 111111111 11113348889999643
Q ss_pred cc----cccccCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHHHHhcCCc
Q 038724 89 ID----LSKIGVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQMKVGNET 138 (483)
Q Consensus 89 ~~----~~~l~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~~~~~~~~ 138 (483)
.. -+.+...+.. ...|..|++|++...-. +.+.+.+...+++.+.+....
T Consensus 188 ~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 188 AGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred cCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 22 1122222221 12344788888655333 778888888888888665443
No 214
>PRK04132 replication factor C small subunit; Provisional
Probab=97.31 E-value=0.0025 Score=67.57 Aligned_cols=136 Identities=8% Similarity=0.005 Sum_probs=87.0
Q ss_pred Ec--CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh---h----hcC-CcEEEEEcCCCCcc--ccc
Q 038724 25 FG--TGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM---I----LST-KKFLLLLDDLWETI--DLS 92 (483)
Q Consensus 25 ~G--~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i---~----l~~-~~~LlvlDdv~~~~--~~~ 92 (483)
.| |.++||||+|.+++++.. ..+.-...+-+++++......+.+.+ . ..+ +..++|+|+++... ...
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQn 648 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELF-GENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQ 648 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHH
Confidence 36 779999999999999862 11111235667777765555444443 1 112 45799999998764 455
Q ss_pred cccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 93 KIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 93 ~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
.+...+......+++|++|.+..-. +.+++.++....+...+..+.. .-..+..+.|++.++|.+
T Consensus 649 ALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi---~i~~e~L~~Ia~~s~GDl 725 (846)
T PRK04132 649 ALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL---ELTEEGLQAILYIAEGDM 725 (846)
T ss_pred HHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCH
Confidence 5555554444456666665544332 8889988888887776644331 122557889999999988
Q ss_pred HHHH
Q 038724 161 LALT 164 (483)
Q Consensus 161 lal~ 164 (483)
....
T Consensus 726 R~AI 729 (846)
T PRK04132 726 RRAI 729 (846)
T ss_pred HHHH
Confidence 5443
No 215
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.31 E-value=0.0023 Score=65.27 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhh
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
||.+..++.+...+.......|.|+|++|+|||++|+.+++.
T Consensus 68 iGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 68 IGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred eCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 578888888888877666667899999999999999999764
No 216
>PRK06921 hypothetical protein; Provisional
Probab=97.30 E-value=0.00038 Score=64.25 Aligned_cols=67 Identities=24% Similarity=0.305 Sum_probs=41.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc-----cchhHHhhhcCCcEEEEEcCCC
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL-----ETSQDDMILSTKKFLLLLDDLW 86 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~-----~~~~~~i~l~~~~~LlvlDdv~ 86 (483)
....+.++|.+|+|||.||.++++.. . +.+...++|++...-... ......+..-.+.=||||||+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~-~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~ 187 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-M-RKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLF 187 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-h-hhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 34679999999999999999999987 2 221345677775432111 0001111112345689999993
No 217
>PRK09183 transposase/IS protein; Provisional
Probab=97.29 E-value=0.00019 Score=66.01 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=38.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-------ccchhHHh-hhcCCcEEEEEcCCCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK-------LETSQDDM-ILSTKKFLLLLDDLWE 87 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~-------~~~~~~~i-~l~~~~~LlvlDdv~~ 87 (483)
..+.|+|++|+|||+||.+++.... ... ..+.|++...-.. ...+...+ ......-++|+||+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~--~~G-~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~ 175 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV--RAG-IKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGY 175 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH--HcC-CeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEccccc
Confidence 4688999999999999999987752 122 2344554321110 00011111 1123456999999964
No 218
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0042 Score=59.05 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=62.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccC--------------------CCCCCEEEEEEeCC----------CcCc---c
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSE--------------------RPGFDVVIWVVVSK----------ELKL---E 65 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~--------------------~~~f~~~~~v~~~~----------~~~~---~ 65 (483)
..-+.++|+.|+|||++|..+++..--. ..|.| ..++.... ...+ +
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEecccccccccccCCCcCHHHHH
Confidence 4568899999999999999998775210 01223 23333211 1122 2
Q ss_pred chhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHHH
Q 038724 66 TSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESWQ 128 (483)
Q Consensus 66 ~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~~ 128 (483)
++...+ ...+++-++|+|+++..+ ....+...+.....+..+|++|.+.... +.+++.+++.+
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~ 179 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALA 179 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHH
Confidence 322233 223455556678887553 2233333332222346566676665432 78888888887
Q ss_pred HHHH
Q 038724 129 VFQM 132 (483)
Q Consensus 129 l~~~ 132 (483)
.+..
T Consensus 180 ~L~~ 183 (325)
T PRK08699 180 YLRE 183 (325)
T ss_pred HHHh
Confidence 7754
No 219
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.29 E-value=0.00091 Score=59.22 Aligned_cols=141 Identities=13% Similarity=0.179 Sum_probs=79.7
Q ss_pred HHHHHhcC------CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC-----cCccchhHHh---hhcC
Q 038724 10 VWRFLVKK------DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE-----LKLETSQDDM---ILST 75 (483)
Q Consensus 10 l~~~l~~~------~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~-----~~~~~~~~~i---~l~~ 75 (483)
|.+.|.+. .++-|.++|++|.|||-+|+++++.. +..| +.|...+- .+-.+-.+++ +-+.
T Consensus 136 i~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~---l~vkat~liGehVGdgar~Ihely~rA~~~ 209 (368)
T COG1223 136 IMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL---LLVKATELIGEHVGDGARRIHELYERARKA 209 (368)
T ss_pred HHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce---EEechHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 44555542 47889999999999999999999977 3333 22211100 0111111112 6677
Q ss_pred CcEEEEEcCCCCc--------------cccccccCCCCC--CCCCCEEEEecCChhhh-------------hccCChHHH
Q 038724 76 KKFLLLLDDLWET--------------IDLSKIGVPLPS--QKIVSKVVFTTHSEEVC-------------VDCFTPQES 126 (483)
Q Consensus 76 ~~~LlvlDdv~~~--------------~~~~~l~~~~~~--~~~gs~ilvTtR~~~~~-------------l~~L~~~~a 126 (483)
.+|.+++|.++.. +.+.+++..+.. .+.|..-|..|-..... ..--++++-
T Consensus 210 aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr 289 (368)
T COG1223 210 APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEER 289 (368)
T ss_pred CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHH
Confidence 8999999998633 112333333322 23455555555555443 334567777
Q ss_pred HHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 127 WQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
.+++..++..-.. ......+.++++.+|+-
T Consensus 290 ~~ile~y~k~~Pl----pv~~~~~~~~~~t~g~S 319 (368)
T COG1223 290 LEILEYYAKKFPL----PVDADLRYLAAKTKGMS 319 (368)
T ss_pred HHHHHHHHHhCCC----ccccCHHHHHHHhCCCC
Confidence 7777777643331 12222566666666643
No 220
>PRK06526 transposase; Provisional
Probab=97.27 E-value=6.6e-05 Score=68.63 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+.|+|++|+|||+||.+++...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 3578999999999999999998876
No 221
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.27 E-value=0.0014 Score=69.99 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=50.5
Q ss_pred CCChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC----Cc-
Q 038724 1 IENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK----EL- 62 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~----~~- 62 (483)
+|.++.++++.+.+.- ...+-+.++|++|+|||++|+++++.. ...| +.+..+. ..
T Consensus 181 ~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~~i~~~~~g 254 (733)
T TIGR01243 181 GGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGPEIMSKYYG 254 (733)
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecHHHhccccc
Confidence 3778888888777642 234578999999999999999999876 2222 2222111 00
Q ss_pred CccchhHHh---hhcCCcEEEEEcCCCC
Q 038724 63 KLETSQDDM---ILSTKKFLLLLDDLWE 87 (483)
Q Consensus 63 ~~~~~~~~i---~l~~~~~LlvlDdv~~ 87 (483)
....-...+ .....+.+|+||+++.
T Consensus 255 ~~~~~l~~lf~~a~~~~p~il~iDEid~ 282 (733)
T TIGR01243 255 ESEERLREIFKEAEENAPSIIFIDEIDA 282 (733)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 001111111 4456778999999864
No 222
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.26 E-value=0.0015 Score=69.75 Aligned_cols=132 Identities=15% Similarity=0.183 Sum_probs=70.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC----CcC-ccchhHHh---hhcCCcEEEEEcCCCCccc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK----ELK-LETSQDDM---ILSTKKFLLLLDDLWETID 90 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~----~~~-~~~~~~~i---~l~~~~~LlvlDdv~~~~~ 90 (483)
.+-+.++|++|+|||++|+++++.. ...| +.+..+. ... ......++ +-+..+++|++|+++....
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~---~~~f---i~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~ 560 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES---GANF---IAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAP 560 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhc
Confidence 4458899999999999999999976 2232 2222111 010 11112222 4456789999999964310
Q ss_pred --------------cccccCCCCC--CCCCCEEEEecCChhhh---------------hccCChHHHHHHHHHHhcCCcc
Q 038724 91 --------------LSKIGVPLPS--QKIVSKVVFTTHSEEVC---------------VDCFTPQESWQVFQMKVGNETL 139 (483)
Q Consensus 91 --------------~~~l~~~~~~--~~~gs~ilvTtR~~~~~---------------l~~L~~~~a~~l~~~~~~~~~~ 139 (483)
...+...+.. ...+..||.||...... +...+.++-.++|..+......
T Consensus 561 ~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~ 640 (733)
T TIGR01243 561 ARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL 640 (733)
T ss_pred cCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC
Confidence 1112222221 12234455566444332 4556677777777665543321
Q ss_pred cCCCCchhHHHHHHhHcCCch
Q 038724 140 VSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 140 ~~~~~~~~~~~~i~~~c~g~P 160 (483)
.. ....+.+++.+.|.-
T Consensus 641 ~~----~~~l~~la~~t~g~s 657 (733)
T TIGR01243 641 AE----DVDLEELAEMTEGYT 657 (733)
T ss_pred Cc----cCCHHHHHHHcCCCC
Confidence 11 112566777777654
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.26 E-value=0.0008 Score=60.93 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=46.5
Q ss_pred HHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc------------CccchhHHh
Q 038724 6 QFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL------------KLETSQDDM 71 (483)
Q Consensus 6 ~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~------------~~~~~~~~i 71 (483)
.+..+.+...+ .+...+.++|.+|+|||+||.++++... .....++++++++-. ...++.+.
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~- 159 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIITVADIMSAMKDTFSNSETSEEQLLND- 159 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHH-
Confidence 34444444443 2235789999999999999999999872 223456677653311 11122222
Q ss_pred hhcCCcEEEEEcCCCCc
Q 038724 72 ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 72 ~l~~~~~LlvlDdv~~~ 88 (483)
+. +.=+|||||+...
T Consensus 160 -l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 160 -LS-NVDLLVIDEIGVQ 174 (244)
T ss_pred -hc-cCCEEEEeCCCCC
Confidence 22 3448888999654
No 224
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.25 E-value=0.00071 Score=72.95 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=33.9
Q ss_pred CCChhHHHHHHHHHhcC---------CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKK---------DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|-++.++.|.+++... ....+.++|+.|+|||+||+.+++..
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 57778888888877531 13467789999999999999999876
No 225
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0033 Score=63.06 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=66.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEE-------EEEEeCCCcCccchhHHhhhcCCcEEEEEcCCCCccc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVV-------IWVVVSKELKLETSQDDMILSTKKFLLLLDDLWETID 90 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~-------~~v~~~~~~~~~~~~~~i~l~~~~~LlvlDdv~~~~~ 90 (483)
..+=|.++|++|+|||++|+++++.. .-.|=.+ -||--|+ ..++++..+ +-+-.+++|+||.++....
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~sk~vGeSE-r~ir~iF~k-AR~~aP~IiFfDEiDsi~~ 541 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFSKYVGESE-RAIREVFRK-ARQVAPCIIFFDEIDALAG 541 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHHHhcCchH-HHHHHHHHH-HhhcCCeEEehhhHHhHhh
Confidence 46779999999999999999999976 3344211 1221110 112222221 4556679999999964411
Q ss_pred -------------cccccCCCCCCCCCCEEEE---ecCChhhh--------------hccCChHHHHHHHHHHhcCCccc
Q 038724 91 -------------LSKIGVPLPSQKIVSKVVF---TTHSEEVC--------------VDCFTPQESWQVFQMKVGNETLV 140 (483)
Q Consensus 91 -------------~~~l~~~~~~~~~gs~ilv---TtR~~~~~--------------l~~L~~~~a~~l~~~~~~~~~~~ 140 (483)
+..++..+........|+| |-|...+- ++.-+.+.-.++|+.++......
T Consensus 542 ~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~ 621 (693)
T KOG0730|consen 542 SRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS 621 (693)
T ss_pred ccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC
Confidence 2222333333222223333 44443332 55556677788898888665533
No 226
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00055 Score=68.96 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=54.2
Q ss_pred CChhHHHHHHHHHhc------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh----
Q 038724 2 ENPKQFYQVWRFLVK------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM---- 71 (483)
Q Consensus 2 gr~~~~~~l~~~l~~------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i---- 71 (483)
|.++.-++|.+.+.- .+-++++++||+|||||.+|+.+++... +.+| -+++++-.+..++.-.-
T Consensus 415 gm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFf----RfSvGG~tDvAeIkGHRRTYV 488 (906)
T KOG2004|consen 415 GMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFF----RFSVGGMTDVAEIKGHRRTYV 488 (906)
T ss_pred chHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceE----EEeccccccHHhhcccceeee
Confidence 556667777777642 2457999999999999999999999872 3333 24555555554433221
Q ss_pred ------------hhcCCcEEEEEcCCCCc
Q 038724 72 ------------ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 72 ------------~l~~~~~LlvlDdv~~~ 88 (483)
..+...=|+.||.|+..
T Consensus 489 GAMPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 489 GAMPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred ccCChHHHHHHHhhCCCCceEEeehhhhh
Confidence 34445558889999754
No 227
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00053 Score=71.04 Aligned_cols=85 Identities=19% Similarity=0.311 Sum_probs=55.7
Q ss_pred CCChhHHHHHHHHHhc---------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh
Q 038724 1 IENPKQFYQVWRFLVK---------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~---------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 71 (483)
||-++.++.+.+++.. ....+..+.||.|||||.||++++... .+.=+..+-++.|+--.-..+-+-|
T Consensus 494 iGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsVSrLI 570 (786)
T COG0542 494 IGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSVSRLI 570 (786)
T ss_pred eChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHHHHHh
Confidence 5778888888888863 245678889999999999999999877 1111333444443322211222222
Q ss_pred -----------------hhcCCcE-EEEEcCCCCc
Q 038724 72 -----------------ILSTKKF-LLLLDDLWET 88 (483)
Q Consensus 72 -----------------~l~~~~~-LlvlDdv~~~ 88 (483)
+.+.++| +|.||+|...
T Consensus 571 GaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 571 GAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred CCCCCCceeccccchhHhhhcCCCeEEEechhhhc
Confidence 6677877 8889999765
No 228
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.18 E-value=0.00079 Score=72.37 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=34.3
Q ss_pred CCChhHHHHHHHHHhc---------CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK---------KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~---------~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|-++.++.+.+++.. ....++.++|++|+|||.+|+++++..
T Consensus 569 ~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 569 IGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5777888888888742 123478999999999999999998876
No 229
>PRK12377 putative replication protein; Provisional
Probab=97.17 E-value=0.00055 Score=62.14 Aligned_cols=66 Identities=26% Similarity=0.200 Sum_probs=40.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc-------cchh-HHhhhcCCcEEEEEcCCCC
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL-------ETSQ-DDMILSTKKFLLLLDDLWE 87 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~-------~~~~-~~i~l~~~~~LlvlDdv~~ 87 (483)
...+.|+|++|+|||.||.++++... .....+.++++.+-... .... ..+..-.+.=||||||+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~ 174 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGI 174 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 35799999999999999999999882 23334577765421110 0000 0111113555899999943
No 230
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.0006 Score=61.58 Aligned_cols=133 Identities=15% Similarity=0.128 Sum_probs=80.8
Q ss_pred cccceEEEEccccccccccCC--CCCCcccEEEecCCccccc-cchhhhcCCCccEEEccCCccCccCC--ccc------
Q 038724 294 KWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDI-KNGFFQFMPCLKVLNLSYNRFLTKLP--SGI------ 362 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p--~~~------ 362 (483)
.++.++.|+++.|.+...... ...++|++|.|.+..+... ..+++..+|.++.|.++.|+.-...- ..+
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~ 174 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTE 174 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchh
Confidence 567888899999887654332 3567888998888876643 23345667777788777774211000 000
Q ss_pred ---------------------ccCcCCCEEeccCCCCCccCcc--ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhh
Q 038724 363 ---------------------SKLVSLQHLDISFTSTLELPEE--LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKE 419 (483)
Q Consensus 363 ---------------------~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~ 419 (483)
.-++|+..+-+..|++++.... ...++.+..|+|+.|++- ++...++
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id----------swasvD~ 244 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID----------SWASVDA 244 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccc----------cHHHHHH
Confidence 1123444444444544444322 344455556666665543 5667778
Q ss_pred hccccccccceeeccCc
Q 038724 420 MLCLEQLNIIRLTSCSL 436 (483)
Q Consensus 420 l~~l~~L~~L~l~~~~l 436 (483)
+..+++|+-|+++++++
T Consensus 245 Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPL 261 (418)
T ss_pred HcCCchhheeeccCCcc
Confidence 88888888888888886
No 231
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.16 E-value=0.00048 Score=65.24 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=36.6
Q ss_pred CCChhHHHHHHHHHhc------CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK------KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~------~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.++.++++.+++.. ...++++++|++|.||||||+++++..
T Consensus 54 ~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 54 FGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4788888888888864 235789999999999999999999887
No 232
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0023 Score=63.46 Aligned_cols=109 Identities=15% Similarity=0.193 Sum_probs=65.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc--------CccchhHHh--hhcCCcEEEEEcCCCCc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL--------KLETSQDDM--ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~--------~~~~~~~~i--~l~~~~~LlvlDdv~~~ 88 (483)
..=|.++|++|+|||-||++|++.. .-.| +++-++- ..+.+..-+ +-...+|.|++|.++..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL 616 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDAL 616 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhc
Confidence 4458899999999999999999976 3343 3332211 111111111 66789999999999643
Q ss_pred c-------------ccccccCCCCC--CCCCCEEEEecCChhhh---------------hccCChHHHHHHHHHHhc
Q 038724 89 I-------------DLSKIGVPLPS--QKIVSKVVFTTHSEEVC---------------VDCFTPQESWQVFQMKVG 135 (483)
Q Consensus 89 ~-------------~~~~l~~~~~~--~~~gs~ilvTtR~~~~~---------------l~~L~~~~a~~l~~~~~~ 135 (483)
- .+.+++..+.. ...|.-||..|-.+++. ++.-+.+|-.++++...-
T Consensus 617 ~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 617 VPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred CcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 1 12333333332 23445555544443332 666677788888877765
No 233
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00025 Score=62.96 Aligned_cols=108 Identities=29% Similarity=0.237 Sum_probs=75.2
Q ss_pred CCCcccEEEecCCccccccchhhhcCCCccEEEccCC--ccCccCCcccccCcCCCEEeccCCCCCccC--ccccCCcCC
Q 038724 316 SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYN--RFLTKLPSGISKLVSLQHLDISFTSTLELP--EELKALEKL 391 (483)
Q Consensus 316 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L 391 (483)
.+..|+.|.+.+..++.+.. |..+++|+.|.++.| +....++-....+++|++|++++|+|+.+. ..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 46677777777776666544 667889999999999 666666666667799999999999866431 125777888
Q ss_pred CEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeec
Q 038724 392 KYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTS 433 (483)
Q Consensus 392 ~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~ 433 (483)
..|++.+|..... ....-..+.-+++|..|+-..
T Consensus 119 ~~Ldl~n~~~~~l--------~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLFNCSVTNL--------DDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcccCCcccc--------ccHHHHHHHHhhhhccccccc
Confidence 9999999875433 122223355566777666433
No 234
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.12 E-value=0.00083 Score=61.39 Aligned_cols=49 Identities=29% Similarity=0.487 Sum_probs=33.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-CEEEEEEeCCCc-CccchhHHh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGF-DVVIWVVVSKEL-KLETSQDDM 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f-~~~~~v~~~~~~-~~~~~~~~i 71 (483)
..++|.|.+|+|||+|++.++++. +.+| +.++++-+++.. ...++.+++
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~ 120 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEM 120 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHH
Confidence 478999999999999999999987 3344 345555555433 244444444
No 235
>PRK06547 hypothetical protein; Provisional
Probab=97.10 E-value=0.00079 Score=57.68 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 7 FYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 7 ~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++.+...+......+|+|.|++|.||||+|+.+++..
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455566667778899999999999999999998865
No 236
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.09 E-value=0.0018 Score=68.95 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=34.1
Q ss_pred CCChhHHHHHHHHHhcC---------CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKK---------DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|-++.++.+.+.+... ...++.++|++|+|||++|+.+++..
T Consensus 457 ~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 457 FGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 46777788887777631 23467899999999999999999876
No 237
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.07 E-value=0.0017 Score=60.13 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=47.8
Q ss_pred HHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh-------------hhcCC
Q 038724 10 VWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM-------------ILSTK 76 (483)
Q Consensus 10 l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i-------------~l~~~ 76 (483)
+.+.+...+ +.|.++|++|+|||++++...... . ...| ...-+..+...+...++.-+ ...++
T Consensus 25 ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k 100 (272)
T PF12775_consen 25 LLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGK 100 (272)
T ss_dssp HHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSS
T ss_pred HHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCc
Confidence 334444443 577999999999999999988765 1 1222 23445666555554444433 34578
Q ss_pred cEEEEEcCCCCc
Q 038724 77 KFLLLLDDLWET 88 (483)
Q Consensus 77 ~~LlvlDdv~~~ 88 (483)
++++++||+.-+
T Consensus 101 ~lv~fiDDlN~p 112 (272)
T PF12775_consen 101 KLVLFIDDLNMP 112 (272)
T ss_dssp EEEEEEETTT-S
T ss_pred EEEEEecccCCC
Confidence 999999999543
No 238
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=3.7e-05 Score=68.48 Aligned_cols=98 Identities=21% Similarity=0.137 Sum_probs=78.2
Q ss_pred cCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhh
Q 038724 340 FMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKE 419 (483)
Q Consensus 340 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~ 419 (483)
.+.+.+.|+..||.+.. + .-..+|+.|+.|.|+-|.|+++. .+..+++|+.|+|+.|.+. +....+-
T Consensus 17 dl~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~----------sldEL~Y 83 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIE----------SLDELEY 83 (388)
T ss_pred HHHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccc----------cHHHHHH
Confidence 35667889999996433 2 23557899999999999999995 4889999999999999865 3456677
Q ss_pred hccccccccceeeccCc----------cccCCCCCcccccc
Q 038724 420 MLCLEQLNIIRLTSCSL----------CSLCGLPTVQCLTS 450 (483)
Q Consensus 420 l~~l~~L~~L~l~~~~l----------~~l~~l~~l~~l~l 450 (483)
+.+|++|+.|.|..|+- .-+.-||+|+.|+.
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 89999999999999984 23566888888874
No 239
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0022 Score=56.47 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=45.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEE---EE--EeCCCcCccchhHHhhhcCCcEEEEEcCCCCc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVI---WV--VVSKELKLETSQDDMILSTKKFLLLLDDLWET 88 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~---~v--~~~~~~~~~~~~~~i~l~~~~~LlvlDdv~~~ 88 (483)
+.++=|.++|++|.|||.||++++++. ...|--+. || .+++.+.+.+-.-.++-.+.+..|++|.++..
T Consensus 187 dpprgvllygppg~gktml~kava~~t---~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 356789999999999999999999976 44441111 11 12333333332333467788999999998643
No 240
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.05 E-value=0.0021 Score=58.47 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=40.1
Q ss_pred HHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEeCCCcCccchhH
Q 038724 9 QVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERP----GFDVVIWVVVSKELKLETSQD 69 (483)
Q Consensus 9 ~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~ 69 (483)
.|.+.|..+ .-.++.|+|++|+|||++|.+++... .... ....++|++..+.+...++.+
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 344444432 33689999999999999999997543 1111 136789999887766554433
No 241
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0029 Score=65.26 Aligned_cols=148 Identities=17% Similarity=0.175 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhcC---------CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc-------cchh
Q 038724 5 KQFYQVWRFLVKK---------DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL-------ETSQ 68 (483)
Q Consensus 5 ~~~~~l~~~l~~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~-------~~~~ 68 (483)
++++|++..|.+. -++=+.++|++|.|||-||++++-.. .-.| ++++.+--+ ..-.
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVPF-----~svSGSEFvE~~~g~~asrv 392 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPF-----FSVSGSEFVEMFVGVGASRV 392 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---CCce-----eeechHHHHHHhcccchHHH
Confidence 4567777777652 24458999999999999999999876 2232 233321100 1112
Q ss_pred HHh---hhcCCcEEEEEcCCCCccc-----------------cccccCCCCCCCCC--CEEEEecCChhhh---------
Q 038724 69 DDM---ILSTKKFLLLLDDLWETID-----------------LSKIGVPLPSQKIV--SKVVFTTHSEEVC--------- 117 (483)
Q Consensus 69 ~~i---~l~~~~~LlvlDdv~~~~~-----------------~~~l~~~~~~~~~g--s~ilvTtR~~~~~--------- 117 (483)
+++ +-...++.+.+|+++...- +.++.......... --++.+|....+.
T Consensus 393 r~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGR 472 (774)
T KOG0731|consen 393 RDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGR 472 (774)
T ss_pred HHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCc
Confidence 222 5667899999999864421 22222222222222 3334456555554
Q ss_pred ------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 118 ------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 118 ------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
++.-+...-.++|..++..... ..+..+..+ ++....|.+=|.
T Consensus 473 fdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 473 FDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHHH
Confidence 5556667788888888765542 133344555 888888887554
No 242
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=2.8e-05 Score=69.85 Aligned_cols=149 Identities=20% Similarity=0.174 Sum_probs=97.2
Q ss_pred cceEEEEccccccccccC---CCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCC--cccccCcCCCE
Q 038724 296 LGLRRMSLMNNQIKTLLN---TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLP--SGISKLVSLQH 370 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~ 370 (483)
+.++.|+++...++...- ...|..|+.|.+.++.+.+..-..+..-.+|+.|+++.++...... --+.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 347778888776653221 1467788888888887776555556666778888888876444322 23567788888
Q ss_pred EeccCCCCCc--cCccccCC-cCCCEEecCCCCCcCCCCCCCCccchhhHhh-hccccccccceeeccCc------cccC
Q 038724 371 LDISFTSTLE--LPEELKAL-EKLKYLDMDDHQQVMEEGNCQSDDAESLLKE-MLCLEQLNIIRLTSCSL------CSLC 440 (483)
Q Consensus 371 L~l~~~~i~~--lp~~~~~l-~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~-l~~l~~L~~L~l~~~~l------~~l~ 440 (483)
|++++|.+.. +.-.+... ++|..|+|++++.. + .....+. -..+++|..|+++.|-. ..+.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-------l--~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-------L--QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh-------h--hhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 8888886322 11111111 47888888887521 1 1223333 35789999999999852 4578
Q ss_pred CCCCcccccceee
Q 038724 441 GLPTVQCLTSRRL 453 (483)
Q Consensus 441 ~l~~l~~l~l~~~ 453 (483)
+++.|+.|.++++
T Consensus 336 kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 336 KFNYLQHLSLSRC 348 (419)
T ss_pred hcchheeeehhhh
Confidence 8999999998765
No 243
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0061 Score=63.48 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=80.6
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhccc--CCCC--CCEEEEEEeC---------CCc--Ccc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCS--ERPG--FDVVIWVVVS---------KEL--KLE 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~--~~~~--f~~~~~v~~~---------~~~--~~~ 65 (483)
|||++++.++.+.|....-.--.++|.+|||||++|.-++.+... +... ...++-..++ ++| .+.
T Consensus 173 IGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk 252 (786)
T COG0542 173 IGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLK 252 (786)
T ss_pred cChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHH
Confidence 799999999999998754444567899999999999988887621 1111 1112222221 111 233
Q ss_pred chhHHhhhcCCcEEEEEcCCCCccc----------ccc-ccCCCCCCCCCCEEEEecCChhhh----------------h
Q 038724 66 TSQDDMILSTKKFLLLLDDLWETID----------LSK-IGVPLPSQKIVSKVVFTTHSEEVC----------------V 118 (483)
Q Consensus 66 ~~~~~i~l~~~~~LlvlDdv~~~~~----------~~~-l~~~~~~~~~gs~ilvTtR~~~~~----------------l 118 (483)
.+.+++.-.+ ++.+++|.++..-. ... +++.+ ..+.-..|-.||-++..- +
T Consensus 253 ~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-ARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V 330 (786)
T COG0542 253 AVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-ARGELRCIGATTLDEYRKYIEKDAALERRFQKVLV 330 (786)
T ss_pred HHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHH-hcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeC
Confidence 4455555556 99999999864411 111 22222 222223555677555432 7
Q ss_pred ccCChHHHHHHHHHHh
Q 038724 119 DCFTPQESWQVFQMKV 134 (483)
Q Consensus 119 ~~L~~~~a~~l~~~~~ 134 (483)
+..+.+++..++....
T Consensus 331 ~EPs~e~ti~ILrGlk 346 (786)
T COG0542 331 DEPSVEDTIAILRGLK 346 (786)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7888888888887544
No 244
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.02 E-value=0.00072 Score=59.47 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh---------------
Q 038724 7 FYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM--------------- 71 (483)
Q Consensus 7 ~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i--------------- 71 (483)
.+.+...+. .+-+++.|.|++|.||||+++.+.... ... . ..+.+..........+.++.
T Consensus 7 ~~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~-~~~-g--~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~ 81 (196)
T PF13604_consen 7 REAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEAL-EAA-G--KRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIP 81 (196)
T ss_dssp HHHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHH-HHT-T----EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEEC
T ss_pred HHHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHH-HhC-C--CeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCC
Confidence 334444444 344689999999999999999988766 222 2 22333333333333333332
Q ss_pred --hh-----cCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEe
Q 038724 72 --IL-----STKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFT 110 (483)
Q Consensus 72 --~l-----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvT 110 (483)
.. ..+.-++|+|++.... .+..+....+. .++++|+.
T Consensus 82 ~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv 127 (196)
T PF13604_consen 82 NGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV 127 (196)
T ss_dssp CEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred cccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence 00 2344599999996543 35455444443 35677765
No 245
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.02 E-value=0.0011 Score=65.29 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=37.3
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+||++.++.+...+..++ .|.|.|++|+|||++|+.++...
T Consensus 23 ~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 23 YERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred cCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 699999999999998774 79999999999999999999876
No 246
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0051 Score=55.70 Aligned_cols=148 Identities=18% Similarity=0.153 Sum_probs=80.9
Q ss_pred CChhHHHHHHHHHh----------cC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC--------
Q 038724 2 ENPKQFYQVWRFLV----------KK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE-------- 61 (483)
Q Consensus 2 gr~~~~~~l~~~l~----------~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~-------- 61 (483)
|.+..-+.|.++.. .. .-+-|.++|++|.|||.||++|+-.. . ..+| ++|..
T Consensus 137 GLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-n-STFF------SvSSSDLvSKWmG 208 (439)
T KOG0739|consen 137 GLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-N-STFF------SVSSSDLVSKWMG 208 (439)
T ss_pred cchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-C-CceE------EeehHHHHHHHhc
Confidence 44555566666552 11 24568889999999999999999876 1 2222 22221
Q ss_pred --cCccchhHHhhhcCCcEEEEEcCCCCc---------cccccccCC-------CCCCCCCCEEEEecCChhhh------
Q 038724 62 --LKLETSQDDMILSTKKFLLLLDDLWET---------IDLSKIGVP-------LPSQKIVSKVVFTTHSEEVC------ 117 (483)
Q Consensus 62 --~~~~~~~~~i~l~~~~~LlvlDdv~~~---------~~~~~l~~~-------~~~~~~gs~ilvTtR~~~~~------ 117 (483)
-.+..-+-+++-++++..|++|.+++. +....+... ......|.-|+-.|--+.+.
T Consensus 209 ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR 288 (439)
T KOG0739|consen 209 ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR 288 (439)
T ss_pred cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH
Confidence 122222333478899999999999743 111122111 22233444455556555443
Q ss_pred ------hccCChHHHHH-HHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 ------VDCFTPQESWQ-VFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 ------l~~L~~~~a~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
.=||.+..|+. +|.-+++.-. ..-.....+.+.++..|.-
T Consensus 289 RFekRIYIPLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 289 RFEKRIYIPLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred HhhcceeccCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCCC
Confidence 33566666554 3444444332 2233344566666665543
No 247
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.00 E-value=0.0019 Score=61.61 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE-EEEEEeCCCc-CccchhHHh--------------------------
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDV-VIWVVVSKEL-KLETSQDDM-------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i-------------------------- 71 (483)
..+.|+|.+|+|||||++.+++... .++-+. ++|+.+++.. ...++.+.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999988762 223233 3454433222 222222222
Q ss_pred ----hhcCCcEEEEEcCCCC
Q 038724 72 ----ILSTKKFLLLLDDLWE 87 (483)
Q Consensus 72 ----~l~~~~~LlvlDdv~~ 87 (483)
.-++++++||+|++..
T Consensus 212 Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHcCCCEEEEEeCcHH
Confidence 4569999999999853
No 248
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00084 Score=67.63 Aligned_cols=67 Identities=30% Similarity=0.273 Sum_probs=48.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC--CcCccchhHHh------hhcCCcEEEEEcCCCC
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK--ELKLETSQDDM------ILSTKKFLLLLDDLWE 87 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~~~~i------~l~~~~~LlvlDdv~~ 87 (483)
..-|.|.|+.|+|||+||+++++... +...-.+.+++.+. ...+..++.-+ ++...+.+|||||++.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhh
Confidence 34789999999999999999999883 44444455565543 22344444433 7889999999999963
No 249
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.99 E-value=0.0014 Score=70.74 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=34.2
Q ss_pred CCChhHHHHHHHHHhcC---------CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKK---------DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||.+..++.|.+.+... ...++.++|+.|+|||++|+++++..
T Consensus 571 iGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 571 IGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 47778888888877631 12478899999999999999999865
No 250
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.98 E-value=0.0015 Score=56.39 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVS 59 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~ 59 (483)
...-+.++|++|+|||.||.++++.... +-..+.|++.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFITAS 84 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEeecC
Confidence 3457999999999999999999988732 22336677543
No 251
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00093 Score=59.25 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe----------C
Q 038724 3 NPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVV----------S 59 (483)
Q Consensus 3 r~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~----------~ 59 (483)
=++.++++++-.+- +.++=|.++|++|.|||-+|++++++. .. +|+.+ +
T Consensus 182 ckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---da-----cfirvigselvqkyvg 253 (435)
T KOG0729|consen 182 CKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DA-----CFIRVIGSELVQKYVG 253 (435)
T ss_pred hHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---Cc-----eEEeehhHHHHHHHhh
Confidence 35667777666542 245668899999999999999999976 33 33332 2
Q ss_pred CCcCccchhHHhhhcCCcEEEEEcCCCC
Q 038724 60 KELKLETSQDDMILSTKKFLLLLDDLWE 87 (483)
Q Consensus 60 ~~~~~~~~~~~i~l~~~~~LlvlDdv~~ 87 (483)
+...+.+-+-+|+-..+.|+|++|.++.
T Consensus 254 egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 254 EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 3333333344457778999999999853
No 252
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.00088 Score=54.96 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.-|+|+||+|+||||+++.+++..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999887
No 253
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.93 E-value=0.00049 Score=65.33 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK 60 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~ 60 (483)
..+.++|++|+|||.||.++++... ..-..++|+++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEHHH
Confidence 6799999999999999999999872 2223567776543
No 254
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.93 E-value=0.0035 Score=56.66 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=39.4
Q ss_pred HHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEeCCCcCccchh
Q 038724 9 QVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERP----GFDVVIWVVVSKELKLETSQ 68 (483)
Q Consensus 9 ~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~ 68 (483)
.+.+.|..+ .-.++.|+|++|+|||++|.+++... ...+ .-..++|++....++...+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~-~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEA-QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHh-hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 444555432 23599999999999999999997764 1111 11567899887766654443
No 255
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.0019 Score=59.16 Aligned_cols=67 Identities=25% Similarity=0.322 Sum_probs=41.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-------ccchhHHh-hhcCCcEEEEEcCCCC
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK-------LETSQDDM-ILSTKKFLLLLDDLWE 87 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~-------~~~~~~~i-~l~~~~~LlvlDdv~~ 87 (483)
+..-+.++|.+|+|||.||.+++++.. +.. ..+.++++.+-.. ......++ ..-.+-=||||||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g-~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KAG-ISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--HcC-CeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccC
Confidence 456799999999999999999999982 322 3366665443211 00111111 1123344889999854
No 256
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.91 E-value=0.0021 Score=67.86 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=34.8
Q ss_pred CCChhHHHHHHHHHhc---------CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK---------KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~---------~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||-++.++.|.+++.. .....+.++|++|+|||++|+.+++..
T Consensus 461 iGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 461 FGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 5777888888888762 123578999999999999999999876
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.91 E-value=0.0018 Score=55.03 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC
Q 038724 21 IIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE 61 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~ 61 (483)
++.|+|++|+|||+++..++... ...-..++|++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcc
Confidence 36899999999999999998876 223345667765544
No 258
>PHA00729 NTP-binding motif containing protein
Probab=96.91 E-value=0.0014 Score=58.01 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=28.9
Q ss_pred HHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 9 QVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 9 ~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+.+.+...+...|.|+|.+|+||||||.+++++.
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555666666789999999999999999999875
No 259
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.90 E-value=0.0036 Score=67.18 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=33.6
Q ss_pred CCChhHHHHHHHHHhc------CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK------KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~------~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.++..++|.+++.. ...+++.++|++|+|||++|+++++..
T Consensus 323 ~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 323 YGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred CChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3667777777776531 133579999999999999999999976
No 260
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0056 Score=53.95 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=45.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCcc-------chhHH---hhhcCCcEEEEEcCCC
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLE-------TSQDD---MILSTKKFLLLLDDLW 86 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~-------~~~~~---i~l~~~~~LlvlDdv~ 86 (483)
.++.=|.++|++|.|||-||+++|++. .+.|+.+|+..-+. +..++ ++-...+..|+.|.++
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht--------~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeid 250 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 250 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeeccc
Confidence 366778999999999999999999865 24556776543211 11111 2667889999999997
Q ss_pred Cc
Q 038724 87 ET 88 (483)
Q Consensus 87 ~~ 88 (483)
+.
T Consensus 251 si 252 (404)
T KOG0728|consen 251 SI 252 (404)
T ss_pred cc
Confidence 55
No 261
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.88 E-value=0.007 Score=59.53 Aligned_cols=48 Identities=27% Similarity=0.551 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHh-----cC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 4 PKQFYQVWRFLV-----KK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 4 ~~~~~~l~~~l~-----~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
++.+++|..||. .. +.+++.|+|++|+||||.++.++... .+..+-|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 345778888887 22 56799999999999999999998876 44445565
No 262
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0098 Score=60.84 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=42.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC-----------cCccchhHHhhhcCCcEEEEEcCCCCc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE-----------LKLETSQDDMILSTKKFLLLLDDLWET 88 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~-----------~~~~~~~~~i~l~~~~~LlvlDdv~~~ 88 (483)
.=|.+||++|.|||-+|++|+-.. . .-|+++-++ .+++++.++ +-+.++|.|++|.+++.
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGPELLNMYVGqSE~NVR~VFer-AR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGPELLNMYVGQSEENVREVFER-ARSAAPCVIFFDELDSL 776 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCHHHHHHHhcchHHHHHHHHHH-hhccCCeEEEecccccc
Confidence 358899999999999999998865 1 234444332 233343333 66789999999999755
No 263
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.84 E-value=0.014 Score=59.18 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=56.2
Q ss_pred CChhHHHHHHHHHhc-----CCeEEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCCCEEEEEEeCCCcCccchhHHh
Q 038724 2 ENPKQFYQVWRFLVK-----KDVGIIGLFGTGGVGKTTILKQINNRFC-----SERPGFDVVIWVVVSKELKLETSQDDM 71 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-----~~~~~v~i~G~~GiGKTtLa~~~~~~~~-----~~~~~f~~~~~v~~~~~~~~~~~~~~i 71 (483)
+|+.+..+|...+.. +.-+.+.|.|.+|.|||..+..|.+... ..-..|+. +.|..-.-....++...|
T Consensus 400 cRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y~~I 478 (767)
T KOG1514|consen 400 CRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIYEKI 478 (767)
T ss_pred chhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHHHHH
Confidence 588888888877753 2345899999999999999999988552 11233432 223322223344444444
Q ss_pred -------------------------hhcCCcEEEEEcCCCCc
Q 038724 72 -------------------------ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 72 -------------------------~l~~~~~LlvlDdv~~~ 88 (483)
.-..+.+++++|+++..
T Consensus 479 ~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~L 520 (767)
T KOG1514|consen 479 WEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDIL 520 (767)
T ss_pred HHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHH
Confidence 34568889999998643
No 264
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.83 E-value=0.0037 Score=56.44 Aligned_cols=53 Identities=23% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc
Q 038724 8 YQVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL 64 (483)
Q Consensus 8 ~~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~ 64 (483)
..|.+.+..+ .-.++.|+|++|+|||++|.+++... ......++|++.. .++.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~ 64 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSP 64 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCH
Confidence 3455555433 24689999999999999999998766 2234668899877 4443
No 265
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.80 E-value=0.0019 Score=60.81 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=51.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC-------cCccchhHHhhhcCCcEEEEEcCCCCc--c
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE-------LKLETSQDDMILSTKKFLLLLDDLWET--I 89 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~-------~~~~~~~~~i~l~~~~~LlvlDdv~~~--~ 89 (483)
.+-+.|+|..|+|||.||.++++... ...+. +.|++++.- .........+..-.+.=||||||+... .
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s 232 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMS 232 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcccc
Confidence 45789999999999999999999882 22333 556654310 000011111222235558899999543 2
Q ss_pred cccc--ccCCC-CCC-CCCCEEEEecCC
Q 038724 90 DLSK--IGVPL-PSQ-KIVSKVVFTTHS 113 (483)
Q Consensus 90 ~~~~--l~~~~-~~~-~~gs~ilvTtR~ 113 (483)
.|.. +...+ ... ..+..+++||--
T Consensus 233 ~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 233 SWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 3332 32222 111 234567777654
No 266
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.77 E-value=0.0045 Score=65.90 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=33.5
Q ss_pred CChhHHHHHHHHHhc------CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 2 ENPKQFYQVWRFLVK------KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 2 gr~~~~~~l~~~l~~------~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|.++..++|.+++.. ....++.++|++|+||||+|+.++...
T Consensus 326 g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 326 GLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred CHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 667777777776652 234589999999999999999999866
No 267
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.77 E-value=0.0028 Score=66.30 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=39.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC------CcCccchhHHh--hhcCCcEEEEEcCCCCc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK------ELKLETSQDDM--ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~------~~~~~~~~~~i--~l~~~~~LlvlDdv~~~ 88 (483)
+-|.++|++|.|||++|+.++... ...| +.++.+. ......+...+ .....+++|++|+++..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l 256 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhh
Confidence 348999999999999999999876 2233 2222211 11111111111 44567899999999654
No 268
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.77 E-value=0.0025 Score=59.46 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=30.5
Q ss_pred ChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHh
Q 038724 3 NPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINN 41 (483)
Q Consensus 3 r~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~ 41 (483)
|..+..--..+|.++++..|.+.|.+|.|||.||.+..-
T Consensus 229 rn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 229 RNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred ccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHH
Confidence 444444445777888899999999999999999977643
No 269
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.76 E-value=0.0011 Score=53.80 Aligned_cols=21 Identities=52% Similarity=0.813 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038724 22 IGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~ 42 (483)
|+|.|++|+||||+|+++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999887
No 270
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.041 Score=51.59 Aligned_cols=151 Identities=12% Similarity=0.018 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcc-------cCCCCCCEEEEEEe-CCCcCccchhHH---h--
Q 038724 6 QFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFC-------SERPGFDVVIWVVV-SKELKLETSQDD---M-- 71 (483)
Q Consensus 6 ~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~-------~~~~~f~~~~~v~~-~~~~~~~~~~~~---i-- 71 (483)
.++.+.+.+..+.. ++..++|..|+||+++|.++++..- ....|-+...++.. +......++... +
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~ 83 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYF 83 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhcc
Confidence 45667777777654 5667999999999999999988751 11122223344432 233333344333 3
Q ss_pred -h-hcCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCChhh-h-----------hccCChHHHHHHHHHHhc
Q 038724 72 -I-LSTKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSEEV-C-----------VDCFTPQESWQVFQMKVG 135 (483)
Q Consensus 72 -~-l~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~~~-~-----------l~~L~~~~a~~l~~~~~~ 135 (483)
. .++.+-++|+||++.... ...+...+.+....+.+|++|.+..- . +.++++++..+.+... +
T Consensus 84 ~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~ 162 (299)
T PRK07132 84 SSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N 162 (299)
T ss_pred CCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C
Confidence 2 225888999999976643 44555556555556666665544322 1 7778888887666543 1
Q ss_pred CCcccCCCCchhHHHHHHhHcCCchHHHHH
Q 038724 136 NETLVSHPAIHKPAKMVAKDCGGLPLALTI 165 (483)
Q Consensus 136 ~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 165 (483)
. ..+.++.++...+|.-.|+..
T Consensus 163 -~-------~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 163 -K-------EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -C-------ChhHHHHHHHHcCCHHHHHHH
Confidence 1 123355566666663345544
No 271
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.72 E-value=0.0042 Score=56.70 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=36.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCCCEEEEEEeCCCc-CccchhHHh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFC-SERPGFDVVIWVVVSKEL-KLETSQDDM 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~-~~~~~f~~~~~v~~~~~~-~~~~~~~~i 71 (483)
..++|.|-.|+|||+|+..++++.. ..+++-+.++++-+++.. ...++.+++
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~ 123 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDF 123 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHh
Confidence 4789999999999999999988761 012334677888776544 355555555
No 272
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.69 E-value=0.0042 Score=53.17 Aligned_cols=69 Identities=22% Similarity=0.235 Sum_probs=44.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEeCCCcC---ccchhHHh-------hhcCCcEEEEEcCCCC
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSER-PGFDVVIWVVVSKELK---LETSQDDM-------ILSTKKFLLLLDDLWE 87 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~~v~~~~~~~---~~~~~~~i-------~l~~~~~LlvlDdv~~ 87 (483)
..++.+.|+.|+|||.+|+++++.. . +.....+-++.+.-.. ........ ......-+|+||+++.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3578899999999999999999988 3 3445566666654444 12222222 0111122999999976
Q ss_pred ccc
Q 038724 88 TID 90 (483)
Q Consensus 88 ~~~ 90 (483)
...
T Consensus 80 a~~ 82 (171)
T PF07724_consen 80 AHP 82 (171)
T ss_dssp CSH
T ss_pred ccc
Confidence 644
No 273
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.65 E-value=0.0078 Score=55.48 Aligned_cols=94 Identities=16% Similarity=0.110 Sum_probs=56.4
Q ss_pred cCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE---EeCCCcCccchh------------------------
Q 038724 16 KKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV---VVSKELKLETSQ------------------------ 68 (483)
Q Consensus 16 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v---~~~~~~~~~~~~------------------------ 68 (483)
.+....++|.|+.|.|||||.+.++.... . ..+.+++ .+.......++.
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~---~-~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILS---T-GISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccC---C-CCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHH
Confidence 44557899999999999999999988662 1 1222222 110000000110
Q ss_pred ---HHhhhcCCcEEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhh
Q 038724 69 ---DDMILSTKKFLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEV 116 (483)
Q Consensus 69 ---~~i~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~ 116 (483)
..+.....+-++++|.+...+.+..+...+. .|..+|+||.+..+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 0113335788999999877665655544442 46789999887544
No 274
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.64 E-value=0.0015 Score=57.49 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|.|++|+||||+|++++...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999887
No 275
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.63 E-value=0.0024 Score=63.86 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=36.8
Q ss_pred CCChhHHHHHHHHHh------cCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLV------KKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~------~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|.++.+++|.+.+. ...-+++.++||+|+|||+||+.+++-.
T Consensus 79 yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 79 YGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 478899999998882 3455799999999999999999999876
No 276
>PRK08233 hypothetical protein; Provisional
Probab=96.61 E-value=0.0019 Score=56.19 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999876
No 277
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.58 E-value=0.0019 Score=53.62 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.++|++|+||||+|+.++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998766
No 278
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.58 E-value=0.0018 Score=46.03 Aligned_cols=23 Identities=35% Similarity=0.694 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+++|.|.+|.||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 279
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.58 E-value=0.0058 Score=54.21 Aligned_cols=47 Identities=32% Similarity=0.625 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC-cCccchhHHh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE-LKLETSQDDM 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~-~~~~~~~~~i 71 (483)
..++|.|.+|+|||+|+..+++.. .-+.++++-+++. ....++.+++
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~ 63 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEEL 63 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHH
Confidence 478999999999999999999876 2344477766644 3344444444
No 280
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.56 E-value=0.0035 Score=56.70 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....+++|.|++|.|||||++.++...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998876
No 281
>PTZ00301 uridine kinase; Provisional
Probab=96.55 E-value=0.002 Score=57.00 Aligned_cols=25 Identities=28% Similarity=0.603 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.+|+|.|++|.||||+|+++.++.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 282
>PRK07667 uridine kinase; Provisional
Probab=96.53 E-value=0.0038 Score=54.82 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=27.7
Q ss_pred HHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 8 YQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 8 ~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+++...+.. +...+|+|.|.+|.||||+|..+....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444443 344799999999999999999998876
No 283
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.53 E-value=0.0028 Score=54.79 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
..+|.+.|++|.||||+|+.+++.. ...+....++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 4589999999999999999999987 3445555555
No 284
>PRK06762 hypothetical protein; Provisional
Probab=96.52 E-value=0.0023 Score=54.78 Aligned_cols=25 Identities=44% Similarity=0.647 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|.|+|++|+||||+|+.+++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 285
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.50 E-value=0.0058 Score=54.81 Aligned_cols=45 Identities=27% Similarity=0.374 Sum_probs=29.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL 62 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~ 62 (483)
++..+|+|+|+||+|||||..++.... ..+++--+++-|+-+.++
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~ 71 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPF 71 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGC
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCC
Confidence 467899999999999999999998877 333433445555544444
No 286
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.50 E-value=0.0049 Score=60.45 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=31.8
Q ss_pred CCChhHHHHHHHHHhc-------C---------CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK-------K---------DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-------~---------~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||.++..+.+..++.+ . ..+.+.++|++|+|||++|+.++...
T Consensus 74 iGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 74 IGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred eChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 5667777766555421 0 12568999999999999999999866
No 287
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.49 E-value=0.0027 Score=56.67 Aligned_cols=27 Identities=41% Similarity=0.577 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....+|+|.|++|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998865
No 288
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.49 E-value=0.005 Score=58.83 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=34.2
Q ss_pred CCChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||+...+.++.+.+.. .....|.|+|..|+||+++|+.+++.-
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 5777777777777764 233578999999999999999998755
No 289
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.46 E-value=0.0041 Score=62.76 Aligned_cols=48 Identities=33% Similarity=0.563 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHhcC-----CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 4 PKQFYQVWRFLVKK-----DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 4 ~~~~~~l~~~l~~~-----~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
++.+++|.+||.+. ..+++.++||+|+||||.++.+++.. .|+.+-|.
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~ 77 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWI 77 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEec
Confidence 45678999999752 35789999999999999999999977 56666675
No 290
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.42 E-value=0.0066 Score=57.18 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=35.6
Q ss_pred HHHHHHhcC---CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC
Q 038724 9 QVWRFLVKK---DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK 63 (483)
Q Consensus 9 ~l~~~l~~~---~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~ 63 (483)
.|..+|..+ .-+++-|+|++|+||||||.+++... ...-..++|++..+.++
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALD 96 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhH
Confidence 445555412 34689999999999999999987765 22234567887655444
No 291
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.42 E-value=0.0066 Score=55.29 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=35.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK 63 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~ 63 (483)
++..+|+|+|.||+|||||..++...+ ..+++--.++-|+-|.+++
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~T 94 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFT 94 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCC
Confidence 466799999999999999999998888 5555555566666665554
No 292
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.41 E-value=0.0038 Score=52.01 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|.|+|.+|.||||+|+++.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999988
No 293
>PRK03839 putative kinase; Provisional
Probab=96.37 E-value=0.0028 Score=54.99 Aligned_cols=23 Identities=48% Similarity=0.755 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|.|.|++|+||||+|+.++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999976
No 294
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.02 Score=53.70 Aligned_cols=65 Identities=23% Similarity=0.207 Sum_probs=42.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC----CCcCc----cchhHHhhhcCCcEEEEEcCCCCc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVS----KELKL----ETSQDDMILSTKKFLLLLDDLWET 88 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~----~~~~~----~~~~~~i~l~~~~~LlvlDdv~~~ 88 (483)
.++-|.++||+|.|||-+|++++.+. ...|-. |.++ +.+.. ....-.++-+=.++.|.+|.|++.
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fIn---v~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~ 198 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA---GANFIN---VSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSF 198 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc---CCCcce---eeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHH
Confidence 45678899999999999999999987 444532 2222 22211 111111255668999999999643
No 295
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.34 E-value=0.0024 Score=50.00 Aligned_cols=22 Identities=32% Similarity=0.727 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 038724 22 IGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|.|+|++|+|||++|..++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988776
No 296
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.33 E-value=0.013 Score=53.85 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=39.6
Q ss_pred HHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccC----CCCCCEEEEEEeCCCcCccchhH
Q 038724 9 QVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSE----RPGFDVVIWVVVSKELKLETSQD 69 (483)
Q Consensus 9 ~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~~f~~~~~v~~~~~~~~~~~~~ 69 (483)
.|.+.|..+ .-.+.=|+|++|+|||.|+.+++-.. .. .+.-..++|++....+...++.+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~~ 91 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQQ 91 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHHH
Confidence 344455322 22488999999999999998876543 11 12235699999888887666554
No 297
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0039 Score=54.63 Aligned_cols=26 Identities=42% Similarity=0.714 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+.+|+|.|.+|.||||+|+.++..+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999987
No 298
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.012 Score=52.28 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=51.4
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE-----EEEEEeCCCcC
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDV-----VIWVVVSKELK 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~-----~~~v~~~~~~~ 63 (483)
|-++.++++.+++-- ..++=|..+|++|.|||-+|++.+.+. ..-|-. .+-...++...
T Consensus 175 GldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQLVQMfIGdGAk 251 (424)
T KOG0652|consen 175 GLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQMFIGDGAK 251 (424)
T ss_pred cHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHHHhhhhcchHH
Confidence 557778888887731 134568899999999999999988765 333311 01111222222
Q ss_pred ccchhHHhhhcCCcEEEEEcCCC
Q 038724 64 LETSQDDMILSTKKFLLLLDDLW 86 (483)
Q Consensus 64 ~~~~~~~i~l~~~~~LlvlDdv~ 86 (483)
+.+-.-.++-...+..|++|.++
T Consensus 252 LVRDAFaLAKEkaP~IIFIDElD 274 (424)
T KOG0652|consen 252 LVRDAFALAKEKAPTIIFIDELD 274 (424)
T ss_pred HHHHHHHHhhccCCeEEEEechh
Confidence 22222223556789999999985
No 299
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.31 E-value=0.0055 Score=54.60 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=35.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchh
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQ 68 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~ 68 (483)
-+++.|+|++|+|||++|.+++... ......++|++... +...++.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHH
Confidence 4689999999999999999988766 23346789998875 4444433
No 300
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.31 E-value=0.0094 Score=57.71 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=35.6
Q ss_pred HHHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC
Q 038724 8 YQVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE 61 (483)
Q Consensus 8 ~~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~ 61 (483)
.++.+.|..+ .-.++.|.|.+|+|||||+.+++... ......++|++..+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~---a~~g~~VlYvs~EEs 121 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL---AKRGGKVLYVSGEES 121 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCcC
Confidence 3455555432 23689999999999999999998876 222346788876543
No 301
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.31 E-value=0.0064 Score=49.22 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 4 PKQFYQVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 4 ~~~~~~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+++++++.+.+... .-.+|.+.|.-|.||||+++.+++..
T Consensus 5 ~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34555565555542 33589999999999999999999986
No 302
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.30 E-value=0.0084 Score=56.51 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=36.8
Q ss_pred HHHHHHhcC---CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc
Q 038724 9 QVWRFLVKK---DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL 64 (483)
Q Consensus 9 ~l~~~l~~~---~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~ 64 (483)
.|..+|..+ .-+++-|+|++|+||||||.+++... ...-..++|++....++.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDP 97 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHH
Confidence 444555522 34689999999999999999987765 223345778877665543
No 303
>PRK09354 recA recombinase A; Provisional
Probab=96.29 E-value=0.009 Score=56.78 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=38.0
Q ss_pred HHHHHHh-cC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc
Q 038724 9 QVWRFLV-KK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL 64 (483)
Q Consensus 9 ~l~~~l~-~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~ 64 (483)
.|..+|. .+ .-+++-|+|++|+||||||.+++... ...-..++|++....++.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHH
Confidence 4455555 22 34689999999999999999987765 223456788887776654
No 304
>PF13245 AAA_19: Part of AAA domain
Probab=96.28 E-value=0.0054 Score=44.46 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=21.6
Q ss_pred HHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 10 VWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 10 l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|.+.+. +.+++.|.|++|.|||+++.+.....
T Consensus 3 v~~al~--~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 3 VRRALA--GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred HHHHHh--hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 334455 34688899999999996655544443
No 305
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.27 E-value=0.01 Score=57.96 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=26.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK 60 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~ 60 (483)
..++|.|..|+|||||++.++... ..+.++++-+++
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGE 198 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGE 198 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcC
Confidence 478999999999999999998754 224445554443
No 306
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.26 E-value=0.011 Score=54.48 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 8 YQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 8 ~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++.++.+.+.+..+|.|.|.+|.|||||+..+.+..
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345666666788999999999999999999999876
No 307
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.26 E-value=0.0036 Score=54.70 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|+|.|++|+||||+|+.+++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 308
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.25 E-value=0.015 Score=59.77 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||....+.++.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 199 iG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 199 IGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred EECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 4666777777776653 233478899999999999999998865
No 309
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.25 E-value=0.017 Score=48.40 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|-|++..|.||||+|...+-+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 477888888999999998887766
No 310
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.24 E-value=0.0051 Score=57.18 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+.+|+|.|+.|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876544
No 311
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.23 E-value=0.0091 Score=52.64 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|.|+|+.|.||||++.++....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999887765
No 312
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.23 E-value=0.0046 Score=55.02 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|+|+|++|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998866
No 313
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.22 E-value=0.0053 Score=54.88 Aligned_cols=24 Identities=29% Similarity=0.703 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|+|+|.|-||+||||++..++...
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 478999999999999999888766
No 314
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.21 E-value=0.16 Score=48.72 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=33.8
Q ss_pred ChhHHHHHHHHHhc---CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 3 NPKQFYQVWRFLVK---KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 3 r~~~~~~l~~~l~~---~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|+...+.|.+.+.+ ....+|+|.|.=|.|||++.+.+.+..
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556777777775 356799999999999999999998877
No 315
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.012 Score=55.48 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=42.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC----CCcCccchhHHhhhcCCcEEEEEcCCCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVS----KELKLETSQDDMILSTKKFLLLLDDLWE 87 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~----~~~~~~~~~~~i~l~~~~~LlvlDdv~~ 87 (483)
+-|..+|++|.|||-||++||..- ...+|....-.-+| +.-.+.+++-+|+-...+..|+||.+++
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc--~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDs 315 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC--GTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDS 315 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh--cCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHH
Confidence 458889999999999999999864 11222111111111 2234555666667777888999999863
No 316
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.20 E-value=0.012 Score=52.91 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC
Q 038724 8 YQVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK 63 (483)
Q Consensus 8 ~~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~ 63 (483)
+.|.+.+..+ .-+++.|+|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 4455555432 34689999999999999999998766 22334577887654443
No 317
>PRK04040 adenylate kinase; Provisional
Probab=96.19 E-value=0.0044 Score=54.02 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|+|+|++|+||||+++.+++..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 318
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.19 E-value=0.0083 Score=59.31 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=34.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-CccchhHHh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL-KLETSQDDM 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i 71 (483)
..++|.|.+|+|||||+.++++... +.+-+.++++-+++.. ...++.+++
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~ 194 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEM 194 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHH
Confidence 4789999999999999999888762 2345677777655432 244444444
No 319
>PRK00625 shikimate kinase; Provisional
Probab=96.18 E-value=0.0039 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.314 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|.++||+|+||||+++.++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 320
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.18 E-value=0.0067 Score=50.80 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 5 KQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 5 ~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+-+++|.+.+.. ++++++|.+|+|||||...+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 457788888876 589999999999999999998764
No 321
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.17 E-value=0.018 Score=54.16 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 4 PKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 4 ~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++....+..++..+ +.|.|.|++|+||||+|++++...
T Consensus 51 ~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 51 KATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred HHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH
Confidence 34556677777654 469999999999999999999977
No 322
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.013 Score=55.91 Aligned_cols=52 Identities=29% Similarity=0.388 Sum_probs=37.9
Q ss_pred HHHHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc
Q 038724 7 FYQVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL 62 (483)
Q Consensus 7 ~~~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~ 62 (483)
+.++.+.|..+ .-.++.|-|-+|||||||..+++.+. ..+. .++||+-.+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~l-A~~~---~vLYVsGEES~ 132 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL-AKRG---KVLYVSGEESL 132 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHH-HhcC---cEEEEeCCcCH
Confidence 34566666554 33689999999999999999999988 2222 68888765543
No 323
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.13 E-value=0.0038 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.|+|++|+||||+|+.+++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998866
No 324
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.13 E-value=0.0057 Score=57.15 Aligned_cols=24 Identities=33% Similarity=0.714 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|.|+|+|-||+||||++..++...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 468999999999999999988776
No 325
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.13 E-value=0.0098 Score=54.37 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCEE-EEEEeCCC-cCccchhHHh
Q 038724 20 GIIGLFGTGGVGKTTIL-KQINNRFCSERPGFDVV-IWVVVSKE-LKLETSQDDM 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa-~~~~~~~~~~~~~f~~~-~~v~~~~~-~~~~~~~~~i 71 (483)
..++|.|.+|+|||+|| ..+++.. +-+.+ +++-+++. ....++.+++
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~ 119 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTL 119 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHH
Confidence 47899999999999996 5565543 22333 45544443 2344444444
No 326
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0061 Score=55.02 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=53.5
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEE---E--EeCCCcC
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIW---V--VVSKELK 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~---v--~~~~~~~ 63 (483)
|-+..+++|.+..+- ..+.=|.++|.+|.|||-||++|+++. ..-|=-++= + ..++.+.
T Consensus 189 Gle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGseLiQkylGdGpk 265 (440)
T KOG0726|consen 189 GLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSELIQKYLGDGPK 265 (440)
T ss_pred cHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHHHHHHHhccchH
Confidence 456778888887752 145568899999999999999999976 444411100 0 1233333
Q ss_pred ccchhHHhhhcCCcEEEEEcCCC
Q 038724 64 LETSQDDMILSTKKFLLLLDDLW 86 (483)
Q Consensus 64 ~~~~~~~i~l~~~~~LlvlDdv~ 86 (483)
+.+-+-.++-...+..+++|.++
T Consensus 266 lvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 266 LVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred HHHHHHHHHHhcCCceEEeehhh
Confidence 33333333667788899999985
No 327
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.027 Score=57.13 Aligned_cols=85 Identities=16% Similarity=0.150 Sum_probs=49.3
Q ss_pred CChhHH---HHHHHHHhcC---------CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC--EEEEEEeCCCcCccch
Q 038724 2 ENPKQF---YQVWRFLVKK---------DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFD--VVIWVVVSKELKLETS 67 (483)
Q Consensus 2 gr~~~~---~~l~~~l~~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~~v~~~~~~~~~~~ 67 (483)
|.++.. .+++..|.+. -++=|.++|++|.|||.||++++... .+ .+|. +.-||..--.....++
T Consensus 154 G~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V-PFf~iSGS~FVemfVGvGAsRV 231 (596)
T COG0465 154 GVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV-PFFSISGSDFVEMFVGVGASRV 231 (596)
T ss_pred CcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC-CceeccchhhhhhhcCCCcHHH
Confidence 445544 4555555542 13458899999999999999999877 22 2221 1122221111222222
Q ss_pred hHHh--hhcCCcEEEEEcCCCCc
Q 038724 68 QDDM--ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 68 ~~~i--~l~~~~~LlvlDdv~~~ 88 (483)
..-. +.+..+|.+++|.++..
T Consensus 232 RdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 232 RDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred HHHHHHhhccCCCeEEEehhhhc
Confidence 2111 56667899999998644
No 328
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.08 E-value=0.0085 Score=51.12 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=32.3
Q ss_pred CCChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||....+.++.+.+.. .....|.|+|..|+||+.+|+.+++.-
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 6777788887777764 233578899999999999999999865
No 329
>PRK06217 hypothetical protein; Validated
Probab=96.08 E-value=0.0051 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|.|.|++|.||||+|+++++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 330
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.0081 Score=50.92 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|.||+|+||||+++++..+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 588999999999999999998854
No 331
>PRK04296 thymidine kinase; Provisional
Probab=96.07 E-value=0.006 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++.|+|+.|.||||+|...+.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 478899999999999999998877
No 332
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.0052 Score=53.16 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|-||=|+||||||+.++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999988
No 333
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.07 E-value=0.015 Score=56.79 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+.++|++|+|||++|+.++...
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 479999999999999999999866
No 334
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.07 E-value=0.012 Score=57.68 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|+|++|+|||||++.++...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999987654
No 335
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.05 E-value=0.0054 Score=53.18 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|++|+||||+++.++...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 336
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.05 E-value=0.024 Score=53.56 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=40.8
Q ss_pred HHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCC----CCCCEEEEEEeCCCcCccchhHHh
Q 038724 9 QVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSER----PGFDVVIWVVVSKELKLETSQDDM 71 (483)
Q Consensus 9 ~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~~f~~~~~v~~~~~~~~~~~~~~i 71 (483)
.|.+.|..+ .-+++-|+|++|+|||+++.+++-.. ... ..-..++|++....+...++.+..
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a 151 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRAIA 151 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 344444432 33688999999999999998876433 111 112468999998887776655433
No 337
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.04 E-value=0.011 Score=50.19 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+.++|++|.||||+.+-+|...
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhh
Confidence 478999999999999999999876
No 338
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.04 E-value=0.012 Score=50.12 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=51.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC--CcCccch---------------hHHh----hhcCCcE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK--ELKLETS---------------QDDM----ILSTKKF 78 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~---------------~~~i----~l~~~~~ 78 (483)
.+++|.|+.|.|||||.+.++... ....+.+++.-.. ..+..+. .+.+ .+...+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 489999999999999999998754 2234444442111 0000000 0111 5667788
Q ss_pred EEEEcCCCCccc---cccccCCCCCC-CCCCEEEEecCChh
Q 038724 79 LLLLDDLWETID---LSKIGVPLPSQ-KIVSKVVFTTHSEE 115 (483)
Q Consensus 79 LlvlDdv~~~~~---~~~l~~~~~~~-~~gs~ilvTtR~~~ 115 (483)
++++|+..+.-+ ...+...+... .++..||++|.+..
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 899999864422 12222222111 23567788877753
No 339
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.03 E-value=0.0057 Score=56.42 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.|.|+|.+|.||||+|+++...+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 478999999999999999998877
No 340
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.02 E-value=0.0053 Score=52.86 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|.|+|++|+||||+|+++++..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999976
No 341
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.02 E-value=0.016 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|.|+.|.|||||++.++...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 489999999999999999998765
No 342
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.02 E-value=0.009 Score=56.33 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=24.4
Q ss_pred cCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 16 KKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 16 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++..|++.+.|=||+||||.|..++.-.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHH
Confidence 4567999999999999999998887766
No 343
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.01 E-value=0.0088 Score=56.37 Aligned_cols=48 Identities=31% Similarity=0.380 Sum_probs=32.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhH
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQD 69 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~ 69 (483)
.+++.+.|.|||||||+|.+.+-.. ...+ ..++-|+..+..++.++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l-A~~g--~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL-AESG--KKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH-HHcC--CcEEEEEeCCCCchHhhhc
Confidence 4789999999999999999977665 2222 3355555555444444433
No 344
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.0051 Score=51.31 Aligned_cols=20 Identities=50% Similarity=0.775 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 038724 21 IIGLFGTGGVGKTTILKQIN 40 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~ 40 (483)
.|+|+|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 345
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.01 E-value=0.013 Score=57.59 Aligned_cols=66 Identities=29% Similarity=0.470 Sum_probs=47.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-CccchhHHh---------------------------
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL-KLETSQDDM--------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i--------------------------- 71 (483)
..++|.|.+|+|||+|+.++.+.. . +.+-+.++|+-+++.. ...++.+++
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 478999999999999999998875 2 2234677777665443 244444444
Q ss_pred ----------hh-cCCcEEEEEcCCCC
Q 038724 72 ----------IL-STKKFLLLLDDLWE 87 (483)
Q Consensus 72 ----------~l-~~~~~LlvlDdv~~ 87 (483)
.- +++.+|+++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 23 68999999999843
No 346
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.00 E-value=0.0091 Score=57.78 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCChhHHHHHHHHHhcC--------------CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKK--------------DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~--------------~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||.++....+..++... ..+.|.++|++|+|||++|++++...
T Consensus 15 iGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 15 IGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred cCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56777777776555531 23678999999999999999999977
No 347
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.00 E-value=0.0049 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|.|.+|.||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998865
No 348
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.011 Score=49.57 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=27.3
Q ss_pred HHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 11 WRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 11 ~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+..+......+|.++|.+|.||||+|.++++..
T Consensus 15 r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 15 REALKGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred HHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 344444556799999999999999999999887
No 349
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.99 E-value=0.0092 Score=51.92 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=28.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVV 57 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~ 57 (483)
.++++|+|++|+|||||++++.... ...|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4689999999999999999999977 56675444443
No 350
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.99 E-value=0.022 Score=51.49 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=35.7
Q ss_pred HHHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc
Q 038724 8 YQVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL 62 (483)
Q Consensus 8 ~~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~ 62 (483)
..+.+.+..+ .-..+.|.|.+|.|||++|.+++... . ..-+.++|++.....
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~-~--~~g~~~~~is~e~~~ 60 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKG-L--RDGDPVIYVTTEESR 60 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHH-H--hcCCeEEEEEccCCH
Confidence 3445555432 34689999999999999999877654 1 224567888875544
No 351
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.99 E-value=0.0057 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|.+.|++|.||||+|+++.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998865
No 352
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.99 E-value=0.008 Score=55.60 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=35.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL 62 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~ 62 (483)
.-+++.|+|.+|+|||++|.++.... ....+.++||+..+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEESP 63 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCCH
Confidence 34699999999999999999998876 4558889999887655
No 353
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.99 E-value=0.16 Score=47.30 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccC-------------------CCCCCEEEEEEeC-CCc
Q 038724 4 PKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSE-------------------RPGFDVVIWVVVS-KEL 62 (483)
Q Consensus 4 ~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~-------------------~~~f~~~~~v~~~-~~~ 62 (483)
+..++.+.+.+..++. ..+.++| |+||+++|..++...-.. ..|.| ..|+.-. ...
T Consensus 8 ~~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD-~~~i~p~~~~I 84 (290)
T PRK07276 8 PKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD-VTVIEPQGQVI 84 (290)
T ss_pred HHHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-eeeecCCCCcC
Confidence 3456677777777754 4567788 589999999887644110 12333 3455322 222
Q ss_pred Cccchh---HHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChh
Q 038724 63 KLETSQ---DDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEE 115 (483)
Q Consensus 63 ~~~~~~---~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~ 115 (483)
.+.++. ..+ ...+++-++|+||++... ....+...+-+...++.+|++|.+..
T Consensus 85 ~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~ 145 (290)
T PRK07276 85 KTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDEN 145 (290)
T ss_pred CHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChh
Confidence 233322 222 455777899999998664 35556666655555566666665543
No 354
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.03 Score=56.95 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=73.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-----------CccchhHHhhhcCCcEEEEEcCCCCcc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL-----------KLETSQDDMILSTKKFLLLLDDLWETI 89 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~-----------~~~~~~~~i~l~~~~~LlvlDdv~~~~ 89 (483)
=|.++|++|+|||.||.+++... . .-++++-++- .++++..+ +-.-++|.+++|..++..
T Consensus 703 giLLyGppGcGKT~la~a~a~~~-----~---~~fisvKGPElL~KyIGaSEq~vR~lF~r-A~~a~PCiLFFDEfdSiA 773 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNS-----N---LRFISVKGPELLSKYIGASEQNVRDLFER-AQSAKPCILFFDEFDSIA 773 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhC-----C---eeEEEecCHHHHHHHhcccHHHHHHHHHH-hhccCCeEEEeccccccC
Confidence 47899999999999999998754 2 2345554321 12222211 556799999999997552
Q ss_pred -------------ccccccCCCC--CCCCCCEEEE-ecCChhhh--------------hccCChHHHHHHHHHHhcCCcc
Q 038724 90 -------------DLSKIGVPLP--SQKIVSKVVF-TTHSEEVC--------------VDCFTPQESWQVFQMKVGNETL 139 (483)
Q Consensus 90 -------------~~~~l~~~~~--~~~~gs~ilv-TtR~~~~~--------------l~~L~~~~a~~l~~~~~~~~~~ 139 (483)
...++...+. .+-.|.-|+. |||-..+- -+.-++.+-.++++.......
T Consensus 774 PkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~- 852 (952)
T KOG0735|consen 774 PKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL- 852 (952)
T ss_pred cccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC-
Confidence 1333443432 2234555554 55654332 112345566666665553222
Q ss_pred cCCCCchhHHHHHHhHcCCchHH
Q 038724 140 VSHPAIHKPAKMVAKDCGGLPLA 162 (483)
Q Consensus 140 ~~~~~~~~~~~~i~~~c~g~Pla 162 (483)
.+.....+.++.+.+|..-|
T Consensus 853 ---~~~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 853 ---KDTDVDLECLAQKTDGFTGA 872 (952)
T ss_pred ---CccccchHHHhhhcCCCchh
Confidence 11233356777777776644
No 355
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.99 E-value=0.02 Score=53.98 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=35.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-CccchhHHh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL-KLETSQDDM 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i 71 (483)
..++|.|..|+|||+|+.+++++. +-+.++++-+++.. .+.++++++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 478999999999999999999865 33567777776543 355556554
No 356
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.98 E-value=0.0044 Score=49.35 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCC
Q 038724 22 IGLFGTGGVGKTTILKQINNRFCSERPGFD 51 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~ 51 (483)
|.|.|.+|+|||++|++++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6899999999999999999977 44553
No 357
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.97 E-value=0.099 Score=49.50 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=32.1
Q ss_pred hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 118 VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 118 l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
+++++.+|+..++..+............+...+++.-..+|+|.-+
T Consensus 261 v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 261 VPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 6678999999999888765543322344455667777779999654
No 358
>PRK08149 ATP synthase SpaL; Validated
Probab=95.97 E-value=0.018 Score=56.45 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|+|.+|+|||||+..++...
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~ 175 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS 175 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC
Confidence 478999999999999999998754
No 359
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.97 E-value=0.0096 Score=49.49 Aligned_cols=90 Identities=24% Similarity=0.290 Sum_probs=50.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe------CCCcC---ccchhHHhhhcCCcEEEEEcCCCCccc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVV------SKELK---LETSQDDMILSTKKFLLLLDDLWETID 90 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~------~~~~~---~~~~~~~i~l~~~~~LlvlDdv~~~~~ 90 (483)
.+++|.|+.|.|||||++.++.... ...+.+++.- ..+.+ .+.+.-...+..++-++++|+....-+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 4899999999999999999987652 2233333311 01011 111111116667888999999854422
Q ss_pred ---cccccCCCCCCCCCCEEEEecCChh
Q 038724 91 ---LSKIGVPLPSQKIVSKVVFTTHSEE 115 (483)
Q Consensus 91 ---~~~l~~~~~~~~~gs~ilvTtR~~~ 115 (483)
...+...+... +..|+++|.+..
T Consensus 103 ~~~~~~l~~~l~~~--~~til~~th~~~ 128 (144)
T cd03221 103 LESIEALEEALKEY--PGTVILVSHDRY 128 (144)
T ss_pred HHHHHHHHHHHHHc--CCEEEEEECCHH
Confidence 22222222211 246777776653
No 360
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.97 E-value=0.008 Score=52.70 Aligned_cols=25 Identities=40% Similarity=0.686 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++++.++|+.|+||||.+.+++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4689999999999999999998887
No 361
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.97 E-value=0.0072 Score=53.91 Aligned_cols=99 Identities=22% Similarity=0.253 Sum_probs=54.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCCCE----------EEEEEeCCCcCc----cchhHHh-------hhcCC
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFC-SERPGFDV----------VIWVVVSKELKL----ETSQDDM-------ILSTK 76 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~-~~~~~f~~----------~~~v~~~~~~~~----~~~~~~i-------~l~~~ 76 (483)
.+.+.|+|+.|.||||+.+.+..... ...+.|-. .++.......++ ..+..++ .....
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 38899999999999999999873210 11122210 111222222111 1122222 55688
Q ss_pred cEEEEEcCCCCcccc-------ccccCCCCCC-CCCCEEEEecCChhhh
Q 038724 77 KFLLLLDDLWETIDL-------SKIGVPLPSQ-KIVSKVVFTTHSEEVC 117 (483)
Q Consensus 77 ~~LlvlDdv~~~~~~-------~~l~~~~~~~-~~gs~ilvTtR~~~~~ 117 (483)
+.|+++|+.....+. ..+...+... ..+..++++|.+....
T Consensus 109 ~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 109 RSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 999999998654321 1122223222 2235789999887664
No 362
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.0057 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.|.|++|.||||+|+.++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 68999999999999999999987
No 363
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.0058 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|.|.|++|.||||+|+.++++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999976
No 364
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.93 E-value=0.016 Score=57.13 Aligned_cols=65 Identities=26% Similarity=0.466 Sum_probs=43.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-CccchhHHh---------------------------
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL-KLETSQDDM--------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i--------------------------- 71 (483)
..++|.|.+|+|||||+..++.... . .+-+.++++-+++.. .+.++.+++
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~-~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIA-K-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-h-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4789999999999999999876651 1 112345555554332 233333333
Q ss_pred ----------hh-cCCcEEEEEcCCC
Q 038724 72 ----------IL-STKKFLLLLDDLW 86 (483)
Q Consensus 72 ----------~l-~~~~~LlvlDdv~ 86 (483)
.- +++.+|+++|++-
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchH
Confidence 34 8899999999984
No 365
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.93 E-value=0.0053 Score=54.23 Aligned_cols=23 Identities=43% Similarity=0.751 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997754
No 366
>PRK04328 hypothetical protein; Provisional
Probab=95.93 E-value=0.018 Score=52.75 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=36.7
Q ss_pred HHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC
Q 038724 9 QVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK 63 (483)
Q Consensus 9 ~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~ 63 (483)
.|.+.|..+ .-.++.|.|.+|.|||+||.++.... ...-+.++|++..+.+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~~~ 64 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEHPV 64 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCCHH
Confidence 444555433 34689999999999999999987654 22345688898776543
No 367
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.92 E-value=0.0023 Score=33.91 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=6.4
Q ss_pred CCEEeccCCCCCccCc
Q 038724 368 LQHLDISFTSTLELPE 383 (483)
Q Consensus 368 L~~L~l~~~~i~~lp~ 383 (483)
|++|++++|+++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3344444444334433
No 368
>PRK05439 pantothenate kinase; Provisional
Probab=95.92 E-value=0.012 Score=55.22 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.+.+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998755
No 369
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.91 E-value=0.022 Score=55.96 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
-..++|+|..|+|||||++.+++..
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~ 182 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNA 182 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3578999999999999999998765
No 370
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.91 E-value=0.0057 Score=51.25 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 371
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.89 E-value=0.02 Score=56.12 Aligned_cols=36 Identities=25% Similarity=0.510 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK 60 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~ 60 (483)
..++|.|.+|+|||||...+++.. .-+.++++-+++
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGE 198 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGE 198 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEcc
Confidence 478999999999999999998865 234566665543
No 372
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.89 E-value=0.011 Score=52.94 Aligned_cols=156 Identities=23% Similarity=0.238 Sum_probs=104.1
Q ss_pred ccccceEEEEccccccccccCC------CCCCcccEEEecCCccccccchhh-------------hcCCCccEEEccCCc
Q 038724 293 LKWLGLRRMSLMNNQIKTLLNT------PSCPHLLTLFLNDNYLQDIKNGFF-------------QFMPCLKVLNLSYNR 353 (483)
Q Consensus 293 ~~~~~l~~l~l~~~~~~~~~~~------~~~~~L~~L~l~~n~~~~~~~~~~-------------~~l~~L~~L~l~~n~ 353 (483)
..++.++.++++.|.+..-.+. +.-..|.+|.+++|++..+...-+ ..-|.|++.....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 3677889999999987644332 466788999999997764433222 234778999888886
Q ss_pred cCccCCc-----ccccCcCCCEEeccCCCCCccC------ccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhcc
Q 038724 354 FLTKLPS-----GISKLVSLQHLDISFTSTLELP------EELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLC 422 (483)
Q Consensus 354 ~~~~~p~-----~~~~l~~L~~L~l~~~~i~~lp------~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~ 422 (483)
+..-|. .+..-.+|.++.+..|.|..=. .++..+.+|+.|||..|.++.. .+...-..+..
T Consensus 169 -lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~-------gS~~La~al~~ 240 (388)
T COG5238 169 -LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE-------GSRYLADALCE 240 (388)
T ss_pred -hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh-------hHHHHHHHhcc
Confidence 444332 2333467888888888765311 1256788999999999976533 12334455677
Q ss_pred ccccccceeeccCccc---------c--CCCCCcccccceeeeee
Q 038724 423 LEQLNIIRLTSCSLCS---------L--CGLPTVQCLTSRRLNLE 456 (483)
Q Consensus 423 l~~L~~L~l~~~~l~~---------l--~~l~~l~~l~l~~~~~~ 456 (483)
.+.|+.|++..|-++. + ...|+|..|...|+...
T Consensus 241 W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 241 WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 7789999999886532 1 34577778877777654
No 373
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.89 E-value=0.008 Score=52.72 Aligned_cols=25 Identities=36% Similarity=0.279 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|.|.|++|+||||+|+.++++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999865
No 374
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.86 E-value=0.011 Score=56.31 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=34.2
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||.++.++.+.-.+.+.+..-+.+.|.+|+||||+|+.++.-.
T Consensus 11 ~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 11 VGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 5778888877765654444579999999999999999997755
No 375
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.85 E-value=0.01 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.603 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|+|-||+||||+|..++.-.
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~L 25 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGL 25 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHH
Confidence 478888999999999999988766
No 376
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.85 E-value=0.019 Score=56.34 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|.|..|+|||||++.++...
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC
Confidence 488999999999999999998754
No 377
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.85 E-value=0.0057 Score=54.82 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|.|++|.||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 378
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.84 E-value=0.0075 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.816 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|.|.+|.||||+|+.++...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 379
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.83 E-value=0.02 Score=55.08 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+++++|+.|+||||++.+++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999999875
No 380
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.81 E-value=0.0096 Score=51.95 Aligned_cols=38 Identities=24% Similarity=0.132 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC
Q 038724 21 IIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE 61 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~ 61 (483)
++.|.|++|+|||++|.+++.... ..-..++|++...+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC
Confidence 367999999999999999877651 22345778876544
No 381
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0075 Score=55.36 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
-|+|.++||+|.|||+|.++++++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 4799999999999999999999987
No 382
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.80 E-value=0.0082 Score=49.37 Aligned_cols=23 Identities=48% Similarity=0.800 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+++|+|++|+|||||++.+++..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998865
No 383
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.80 E-value=0.031 Score=53.41 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=37.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcc--cCCCC-CCEEEEEEeCCCcCccchhHHh
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFC--SERPG-FDVVIWVVVSKELKLETSQDDM 71 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~--~~~~~-f~~~~~v~~~~~~~~~~~~~~i 71 (483)
-+++-|+|.+|+|||+|+.+++-... ...+. -..++|++....+...++.+..
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia 181 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIA 181 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHH
Confidence 36888999999999999998864330 11111 2468999999888777665543
No 384
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.79 E-value=0.014 Score=48.13 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK 60 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~ 60 (483)
++|.|+|..|+|||||++.+.+.. . +..+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-K-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-H-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-h-HcCCceEEEEEccC
Confidence 479999999999999999999988 2 23455444555444
No 385
>PRK13947 shikimate kinase; Provisional
Probab=95.78 E-value=0.008 Score=51.63 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999976
No 386
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.78 E-value=0.016 Score=51.48 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=28.6
Q ss_pred HHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 11 WRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 11 ~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+.+...++++|+++|..|+|||||..++.+..
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445566789999999999999999999998875
No 387
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.78 E-value=0.013 Score=56.81 Aligned_cols=43 Identities=26% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCChhHHHHHHHHHhcC--------------CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKK--------------DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~--------------~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||.++....+..++... ..+.+.++|++|+|||++|+.++...
T Consensus 18 iGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 18 IGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 57777777777776430 13678999999999999999999876
No 388
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.78 E-value=0.027 Score=53.80 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=36.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccC---CC-CCCEEEEEEeCCCcCccchhHH
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSE---RP-GFDVVIWVVVSKELKLETSQDD 70 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~-~f~~~~~v~~~~~~~~~~~~~~ 70 (483)
-.++-|+|.+|+|||+++..++-.. .. .+ .-..++|++....+...++.+-
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~qi 177 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLIQI 177 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHHHH
Confidence 4688899999999999998887543 11 11 1136899999988876665443
No 389
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.77 E-value=0.011 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.708 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|+|-||+||||+|..++.-.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 478888999999999999988766
No 390
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.0074 Score=48.86 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=31.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHH
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDD 70 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~ 70 (483)
.+-|.|+|.+|+||||+|.+++... .| -|+++|+-.....+...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~~---~~i~isd~vkEn~l~~g 50 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----GL---EYIEISDLVKENNLYEG 50 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----CC---ceEehhhHHhhhcchhc
Confidence 3568999999999999999998754 33 36666654444444333
No 391
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.76 E-value=0.018 Score=52.41 Aligned_cols=52 Identities=17% Similarity=0.072 Sum_probs=36.6
Q ss_pred HHHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc
Q 038724 8 YQVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL 62 (483)
Q Consensus 8 ~~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~ 62 (483)
+.|.+.|..+ .-.++.|.|++|.|||++|.++.... -..-+.++|++...+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee~~ 61 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEEHP 61 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeCCH
Confidence 3455555443 34689999999999999999976654 1234568888876643
No 392
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.76 E-value=0.036 Score=62.89 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++=|.++|++|.|||.||+++|.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999999976
No 393
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.75 E-value=0.026 Score=52.15 Aligned_cols=36 Identities=33% Similarity=0.372 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 7 FYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 7 ~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++.+.+++. ....+|.|.|+.|.||||++.++....
T Consensus 69 ~~~l~~~~~-~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 69 LEIFRKLLE-KPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHHHHHHh-cCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 344444444 334689999999999999999887655
No 394
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.74 E-value=0.0076 Score=51.38 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 038724 22 IGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.|+|.+|+||||+++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999877
No 395
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.74 E-value=0.015 Score=51.14 Aligned_cols=23 Identities=48% Similarity=0.713 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|+|+|-||+||||+|..++.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 58999999999999999977666
No 396
>PHA02774 E1; Provisional
Probab=95.74 E-value=0.026 Score=56.75 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCC-eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcCCcEEEEEcCC
Q 038724 7 FYQVWRFLVKKD-VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILSTKKFLLLLDDL 85 (483)
Q Consensus 7 ~~~l~~~l~~~~-~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~~~~LlvlDdv 85 (483)
+..+..++.... ...+.|+|++|.|||.+|-++.+-. ....+.|+.....+-+. .+.+.+ ++|+||+
T Consensus 421 l~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L-----~G~vi~fvN~~s~FwLq------pl~d~k-i~vlDD~ 488 (613)
T PHA02774 421 LTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL-----KGKVISFVNSKSHFWLQ------PLADAK-IALLDDA 488 (613)
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEEECccccccc------hhccCC-EEEEecC
Confidence 455556654332 3589999999999999999998865 23345667654333221 233444 6889999
No 397
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.73 E-value=0.011 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|.|+|++|+|||||++++.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998765
No 398
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.73 E-value=0.0074 Score=50.24 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.|.|++|+||||+|+.+++..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 399
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.71 E-value=0.024 Score=50.90 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=67.8
Q ss_pred ccccccceEEEEccccccccccC---------------CCCCCcccEEEecCCccccccch----hhhcCCCccEEEccC
Q 038724 291 DALKWLGLRRMSLMNNQIKTLLN---------------TPSCPHLLTLFLNDNYLQDIKNG----FFQFMPCLKVLNLSY 351 (483)
Q Consensus 291 ~~~~~~~l~~l~l~~~~~~~~~~---------------~~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~ 351 (483)
++.....+..|.+++|.+-.+.. ...-+.|++.+...|.+..-+.. .+....+|+++.+..
T Consensus 115 ~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q 194 (388)
T COG5238 115 LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ 194 (388)
T ss_pred HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee
Confidence 33344556666666665432211 12345666666666665543322 233344666666666
Q ss_pred CccCcc-----CCcccccCcCCCEEeccCCCCCccC-----ccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhc
Q 038724 352 NRFLTK-----LPSGISKLVSLQHLDISFTSTLELP-----EELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEML 421 (483)
Q Consensus 352 n~~~~~-----~p~~~~~l~~L~~L~l~~~~i~~lp-----~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~ 421 (483)
|.+-.. +-..+..+.+|+.||+..|-.+... ..+...+.|+.|++..|.+... .....+..+.
T Consensus 195 NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~-------G~~~v~~~f~ 267 (388)
T COG5238 195 NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE-------GVKSVLRRFN 267 (388)
T ss_pred cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc-------cHHHHHHHhh
Confidence 643211 0113345566777777666543322 2234445566676666653321 1122333333
Q ss_pred c--ccccccceeeccC
Q 038724 422 C--LEQLNIIRLTSCS 435 (483)
Q Consensus 422 ~--l~~L~~L~l~~~~ 435 (483)
. .++|..|....|.
T Consensus 268 e~~~p~l~~L~~~Yne 283 (388)
T COG5238 268 EKFVPNLMPLPGDYNE 283 (388)
T ss_pred hhcCCCccccccchhh
Confidence 2 3456666666554
No 400
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.71 E-value=0.033 Score=52.66 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|.|..|.|||||++.++...
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~ 93 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGT 93 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC
Confidence 478999999999999999998755
No 401
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.70 E-value=0.026 Score=56.40 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=35.1
Q ss_pred HHHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC
Q 038724 8 YQVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE 61 (483)
Q Consensus 8 ~~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~ 61 (483)
.++.+.|..+ .-.++.|.|.+|+|||||+.+++... . ..-..++|++..+.
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~-a--~~g~kvlYvs~EEs 133 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL-A--KNQMKVLYVSGEES 133 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH-H--hcCCcEEEEECcCC
Confidence 3455555432 33689999999999999999998766 2 12235788876544
No 402
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.70 E-value=0.024 Score=56.19 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=32.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCC--CEEEEEEeCCCc-CccchhHHh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGF--DVVIWVVVSKEL-KLETSQDDM 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f--~~~~~v~~~~~~-~~~~~~~~i 71 (483)
..++|.|..|+|||+|+..++++. ...+.+ ..++++-+++.. ...++.+++
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~ 195 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDF 195 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHH
Confidence 478999999999999999999876 222111 145555554332 344444444
No 403
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.67 E-value=0.036 Score=52.55 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=38.1
Q ss_pred HHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccC---CC-CCCEEEEEEeCCCcCccch
Q 038724 9 QVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSE---RP-GFDVVIWVVVSKELKLETS 67 (483)
Q Consensus 9 ~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~-~f~~~~~v~~~~~~~~~~~ 67 (483)
.+.+.|..+ .-.++.|+|.+|+|||+|+..++... .. .+ .-..++|++..+.+...++
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl 147 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERL 147 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHH
Confidence 344444432 34689999999999999999887532 11 11 1235789988877665544
No 404
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.67 E-value=0.023 Score=60.34 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||+...+.++.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 379 iG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 379 IGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred eecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 4666667766655553 233589999999999999999998865
No 405
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.67 E-value=0.064 Score=49.75 Aligned_cols=108 Identities=9% Similarity=0.066 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhccc-----------CCCCCCEEEEEEeCCC--cCcc---chhH
Q 038724 7 FYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCS-----------ERPGFDVVIWVVVSKE--LKLE---TSQD 69 (483)
Q Consensus 7 ~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~-----------~~~~f~~~~~v~~~~~--~~~~---~~~~ 69 (483)
-+++.+.+..+.. .-+.++|+.|+||+++|.+++...-. ...|-|.......+.. ..++ ++..
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~ 85 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKK 85 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHH
Confidence 4567777777654 46779999999999999998876621 1124443322222221 2233 2333
Q ss_pred Hh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCCh
Q 038724 70 DM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSE 114 (483)
Q Consensus 70 ~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~ 114 (483)
.+ ...++.-++|+|+++... ....+...+-+...+..+|++|.+.
T Consensus 86 ~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 86 QIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred HHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 33 444777788999998663 3555555555444556666655554
No 406
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.66 E-value=0.022 Score=56.05 Aligned_cols=67 Identities=25% Similarity=0.451 Sum_probs=44.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-CccchhHHh---------------------------
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL-KLETSQDDM--------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~-~~~~~~~~i--------------------------- 71 (483)
..++|.|.+|+|||+|+..++.... +.+-..++++-+++.. .+.++.+++
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4789999999999999999887651 1222356666554432 234444444
Q ss_pred ----------hh-cCCcEEEEEcCCCCc
Q 038724 72 ----------IL-STKKFLLLLDDLWET 88 (483)
Q Consensus 72 ----------~l-~~~~~LlvlDdv~~~ 88 (483)
.- +++.+|+++||+-.-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 23 688999999998543
No 407
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.66 E-value=0.011 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|+|++|+||||+|++++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999876
No 408
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.65 E-value=0.0092 Score=51.74 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++++|+|++|+||||+|+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999998854
No 409
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.65 E-value=0.014 Score=54.68 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++++|+|-||+||||+|..++...
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 468888999999999999988876
No 410
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.016 Score=59.13 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=41.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC-CcC-ccchhHHh---hhcCCcEEEEEcCCCCc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK-ELK-LETSQDDM---ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~-~~~-~~~~~~~i---~l~~~~~LlvlDdv~~~ 88 (483)
..+.+.++|++|.|||.||+++++.. ...|-.+..-.... ... ......++ +.+..++.|++|+++..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSL 347 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhh
Confidence 45589999999999999999999955 33443222111111 000 01111111 56789999999999644
No 411
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.63 E-value=0.015 Score=54.11 Aligned_cols=24 Identities=29% Similarity=0.744 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|.|-||+||||++..++...
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~l 26 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAF 26 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 688888999999999999988876
No 412
>PRK13949 shikimate kinase; Provisional
Probab=95.63 E-value=0.0096 Score=50.94 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|.|+|++|.||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999977
No 413
>PRK14530 adenylate kinase; Provisional
Probab=95.62 E-value=0.0093 Score=53.41 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.|.|+|++|+||||+|+.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998876
No 414
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.61 E-value=0.028 Score=55.03 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|.|..|+|||||+..++...
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~ 161 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYT 161 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998755
No 415
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.61 E-value=0.03 Score=57.12 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=33.5
Q ss_pred CCChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||+...+.++.+.+.. .....|.|+|..|+||+++|+.+++..
T Consensus 190 ig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 190 IGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred eecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4666677777666654 233578999999999999999998865
No 416
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.60 E-value=0.021 Score=54.77 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=34.8
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+++.+..+..++..++ .+.+.|++|+|||+||++++...
T Consensus 27 ~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l 67 (329)
T COG0714 27 VGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL 67 (329)
T ss_pred eccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh
Confidence 467777777777777664 78999999999999999999987
No 417
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.59 E-value=0.019 Score=51.97 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccC----CCCCCEEEEEEeCCCcCccchhHHh
Q 038724 6 QFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSE----RPGFDVVIWVVVSKELKLETSQDDM 71 (483)
Q Consensus 6 ~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~~f~~~~~v~~~~~~~~~~~~~~i 71 (483)
..+.+..++.... +..|+|++|.|||+++.++....... ...-...+-+....+..+..+...+
T Consensus 6 Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l 73 (236)
T PF13086_consen 6 QREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERL 73 (236)
T ss_dssp HHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHH
Confidence 4455555555443 78999999999998777776655110 1233334555555555566665554
No 418
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.59 E-value=0.024 Score=55.52 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|.|..|+|||||++.++...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~ 164 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNT 164 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC
Confidence 578999999999999999988754
No 419
>PRK05922 type III secretion system ATPase; Validated
Probab=95.58 E-value=0.032 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|+|..|+|||||.+.++...
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC
Confidence 478999999999999999998754
No 420
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=95.57 E-value=0.024 Score=47.57 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038724 22 IGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~ 42 (483)
|+|+|.+|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999775
No 421
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.56 E-value=0.018 Score=54.99 Aligned_cols=43 Identities=14% Similarity=0.310 Sum_probs=34.7
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||-++....+.-.+.+....-|.|.|.+|+||||+++.++.-.
T Consensus 7 vgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 7 VGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 5777788777777766556678899999999999999997544
No 422
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.55 E-value=0.029 Score=55.23 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
-..++|.|..|+|||||++.++...
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3588999999999999999998754
No 423
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.54 E-value=0.01 Score=49.82 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 038724 22 IGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|.|+|++|.||||+|+.+++..
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998866
No 424
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.54 E-value=0.013 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++++|+|..|.|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999877
No 425
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.54 E-value=0.0089 Score=50.89 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 038724 22 IGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|+|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 426
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.53 E-value=0.019 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
-+++|+|.+|.|||||++.++--.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 489999999999999999998754
No 427
>PLN02200 adenylate kinase family protein
Probab=95.49 E-value=0.013 Score=52.97 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+.+|.|.|++|+||||+|+.+++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999998865
No 428
>PRK14527 adenylate kinase; Provisional
Probab=95.49 E-value=0.012 Score=51.51 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|.|+|++|.||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998866
No 429
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.47 E-value=0.12 Score=48.11 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=31.4
Q ss_pred CChhHHHHHHHHHhc----CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 2 ENPKQFYQVWRFLVK----KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 2 gr~~~~~~l~~~l~~----~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|-.++...+.+++.. +....|.|+|+.|.|||+|...+..+.
T Consensus 28 g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~ 73 (408)
T KOG2228|consen 28 GVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI 73 (408)
T ss_pred ehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH
Confidence 445566666666643 455688999999999999998887764
No 430
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.47 E-value=0.019 Score=50.70 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....+|+|+|++|.||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998866
No 431
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.45 E-value=0.032 Score=55.94 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.-.+|+|++|+|||||++.+++..
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i 440 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAI 440 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHH
Confidence 367999999999999999999865
No 432
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.44 E-value=0.011 Score=55.88 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|++.+.|-||+||||+|.+.+-..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~ 25 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL 25 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH
Confidence 588999999999999998887766
No 433
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.44 E-value=0.017 Score=53.69 Aligned_cols=24 Identities=29% Similarity=0.714 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|.|-||+||||++..++...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L 25 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL 25 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH
Confidence 467778999999999999988876
No 434
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.43 E-value=0.018 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|+|-||+||||+|..++.-.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~L 26 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAM 26 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Confidence 688888999999999999887765
No 435
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.42 E-value=0.027 Score=51.15 Aligned_cols=59 Identities=17% Similarity=0.057 Sum_probs=39.4
Q ss_pred HHHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh
Q 038724 8 YQVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM 71 (483)
Q Consensus 8 ~~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i 71 (483)
..+.+.|..+ .-+++.|+|.+|+|||++|.+++... ...-..++|++..+.+ .++...+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~~--~~~~~~~ 72 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENTS--KSYLKQM 72 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCCH--HHHHHHH
Confidence 3445555433 34689999999999999999997654 1234568888886543 3444443
No 436
>PRK05973 replicative DNA helicase; Provisional
Probab=95.42 E-value=0.021 Score=51.40 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE 61 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~ 61 (483)
.++.|.|.+|+|||++|.+++... . + .-..++|++...+
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~-a-~-~Ge~vlyfSlEes 103 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEA-M-K-SGRTGVFFTLEYT 103 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH-H-h-cCCeEEEEEEeCC
Confidence 589999999999999999987765 2 2 2355778877665
No 437
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.41 E-value=0.013 Score=51.17 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997754
No 438
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.012 Score=50.59 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.|.++|++|+||||+|+++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 468899999999999999998876
No 439
>PRK06820 type III secretion system ATPase; Validated
Probab=95.41 E-value=0.035 Score=54.65 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|.|.+|+|||||+..++...
T Consensus 164 qri~I~G~sG~GKStLl~~I~~~~ 187 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCADS 187 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhccC
Confidence 478999999999999999988754
No 440
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=0.066 Score=47.00 Aligned_cols=105 Identities=20% Similarity=0.158 Sum_probs=62.5
Q ss_pred HHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE--EEEEEeCC-------CcCccchhHHh---------
Q 038724 10 VWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDV--VIWVVVSK-------ELKLETSQDDM--------- 71 (483)
Q Consensus 10 l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~--~~~v~~~~-------~~~~~~~~~~i--------- 71 (483)
+.+.+-..+..-..|.|++|+|||||.+.+++-.....+.|-+ +.-++-+. ......+...+
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~ 207 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKA 207 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHH
Confidence 4444444555557899999999999999999877433344532 22222111 01111122222
Q ss_pred ------hhcCCcEEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhhh
Q 038724 72 ------ILSTKKFLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEVC 117 (483)
Q Consensus 72 ------~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~ 117 (483)
--...+=.+|+|.+-..++..++...+ ..|.+++.|..--.+.
T Consensus 208 ~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ie 256 (308)
T COG3854 208 EGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGIE 256 (308)
T ss_pred HHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccHH
Confidence 233567789999998887766655554 3478888887655443
No 441
>PRK13948 shikimate kinase; Provisional
Probab=95.41 E-value=0.015 Score=50.30 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+.|.++|+.|+||||+++.++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999876
No 442
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.40 E-value=0.032 Score=55.18 Aligned_cols=64 Identities=20% Similarity=0.364 Sum_probs=43.1
Q ss_pred EEEEEEcCCCCcHHHHHH-HHHhhcccCCCCCCEE-EEEEeCCCc-CccchhHHh-------------------------
Q 038724 20 GIIGLFGTGGVGKTTILK-QINNRFCSERPGFDVV-IWVVVSKEL-KLETSQDDM------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~-~~~~~~~~~~~~f~~~-~~v~~~~~~-~~~~~~~~i------------------------- 71 (483)
..++|.|..|+|||+||. .+.++. .-+.+ +++-+++.. ...++.+.+
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~q~-----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILNQK-----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHhcc-----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 478999999999999964 455543 22333 666665433 344454444
Q ss_pred ------------hhcCCcEEEEEcCCCCc
Q 038724 72 ------------ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 72 ------------~l~~~~~LlvlDdv~~~ 88 (483)
.-+|+.+|+|+||+...
T Consensus 217 ap~~a~aiAEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 217 APYTGAALAEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHhhHHHHHHHcCCCEEEEEcChhHH
Confidence 45689999999998543
No 443
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.39 E-value=0.012 Score=50.12 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038724 22 IGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~ 42 (483)
|+|+|..|+|||||++++++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999874
No 444
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.38 E-value=0.023 Score=52.63 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+++.++|++|+||||.+..++...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 445
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.38 E-value=0.013 Score=52.01 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+++|+|++|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998865
No 446
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.37 E-value=0.046 Score=53.91 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|+|..|+|||||++.++...
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~ 192 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFT 192 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999997744
No 447
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.37 E-value=0.042 Score=52.41 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=38.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEeCCCcCccchhHHh
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERP----GFDVVIWVVVSKELKLETSQDDM 71 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~~~i 71 (483)
-.++-|+|++|+|||+++.+++... .... .-..++|++..+.++..++.+..
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~ 157 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQMA 157 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHHHH
Confidence 4688999999999999999998664 1111 11468999998888777665543
No 448
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.35 E-value=0.049 Score=51.81 Aligned_cols=52 Identities=19% Similarity=0.184 Sum_probs=37.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCC---C-CCCEEEEEEeCCCcCccchhHHh
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSER---P-GFDVVIWVVVSKELKLETSQDDM 71 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~-~f~~~~~v~~~~~~~~~~~~~~i 71 (483)
-.++-|+|++|+|||+++.+++... ... + .-..++||+....+...++.+.+
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 4688999999999999999998764 111 0 11268999988887776655443
No 449
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.35 E-value=0.035 Score=44.13 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=28.4
Q ss_pred HHHHHHHHHhc---CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 6 QFYQVWRFLVK---KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 6 ~~~~l~~~l~~---~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+..|...+.+ ..+-|+.++|++|+|||.+++.+++..
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34445555543 245688999999999999999998885
No 450
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.34 E-value=0.015 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhh
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
..+.++|+|++|+|||||++++.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678999999999999999999754
No 451
>PRK13975 thymidylate kinase; Provisional
Probab=95.33 E-value=0.015 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|+|.|+.|+||||+|+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
No 452
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.048 Score=57.87 Aligned_cols=86 Identities=13% Similarity=0.200 Sum_probs=57.2
Q ss_pred CCChhHHHHHHHHHhcC--------CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC--------CcCc
Q 038724 1 IENPKQFYQVWRFLVKK--------DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK--------ELKL 64 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~--------~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~--------~~~~ 64 (483)
+|-++.+..|.+++... ...++.+.|+.|+|||.||++++.-. .+..+..+-++.+. ....
T Consensus 565 ~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~evskligsp~ 641 (898)
T KOG1051|consen 565 IGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQEVSKLIGSPP 641 (898)
T ss_pred cchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhhhhhhccCCCc
Confidence 46677778888887641 35688999999999999999999876 55555566666654 1111
Q ss_pred ----cchhHHh--hhcCCcE-EEEEcCCCCcc
Q 038724 65 ----ETSQDDM--ILSTKKF-LLLLDDLWETI 89 (483)
Q Consensus 65 ----~~~~~~i--~l~~~~~-LlvlDdv~~~~ 89 (483)
.+....+ .++.++| +|+||||+..+
T Consensus 642 gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 642 GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred ccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 1111122 5566665 67789997663
No 453
>PRK13946 shikimate kinase; Provisional
Probab=95.33 E-value=0.014 Score=50.86 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+.|.++|++|+||||+++.++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999976
No 454
>PTZ00035 Rad51 protein; Provisional
Probab=95.32 E-value=0.077 Score=50.82 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=37.4
Q ss_pred HHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccC---CC-CCCEEEEEEeCCCcCccch
Q 038724 9 QVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSE---RP-GFDVVIWVVVSKELKLETS 67 (483)
Q Consensus 9 ~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~---~~-~f~~~~~v~~~~~~~~~~~ 67 (483)
.|.+.|..+ .-.++.|+|.+|+|||+|+..++-.. .. .+ .-..++|++....+...++
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri 169 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI 169 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH
Confidence 344444432 34689999999999999999887543 11 11 2234679988776655443
No 455
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=95.32 E-value=0.031 Score=55.49 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=33.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCC--CCCEEEEEEeCCCc-CccchhHHh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERP--GFDVVIWVVVSKEL-KLETSQDDM 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~--~f~~~~~v~~~~~~-~~~~~~~~i 71 (483)
..++|.|..|+|||+|+..++++. ...+ .--.++++-+++.. .+.++.+++
T Consensus 144 QR~gIfgg~G~GKs~L~~~ia~~~-~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~ 197 (460)
T PRK04196 144 QKLPIFSGSGLPHNELAAQIARQA-KVLGEEENFAVVFAAMGITFEEANFFMEDF 197 (460)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhh-hhccCCCceEEEEEEeccccHHHHHHHHHH
Confidence 478999999999999999998875 2111 11145666655433 345555555
No 456
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.19 Score=51.88 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHhcC---------CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh--
Q 038724 3 NPKQFYQVWRFLVKK---------DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM-- 71 (483)
Q Consensus 3 r~~~~~~l~~~l~~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i-- 71 (483)
++..+-.+...+... -..++.++|.+|+||||++++++......--.++|.-.++-+...+...+..-.
T Consensus 406 ~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~ 485 (953)
T KOG0736|consen 406 LEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSR 485 (953)
T ss_pred chHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHH
Confidence 344455566666532 245889999999999999999999872111112333333333333322222222
Q ss_pred hhcCCcEEEEEcCCCCc-------cc------cccccC--CCCCCCCCCEEEEecCC-hhhh------------hccCCh
Q 038724 72 ILSTKKFLLLLDDLWET-------ID------LSKIGV--PLPSQKIVSKVVFTTHS-EEVC------------VDCFTP 123 (483)
Q Consensus 72 ~l~~~~~LlvlDdv~~~-------~~------~~~l~~--~~~~~~~gs~ilvTtR~-~~~~------------l~~L~~ 123 (483)
+..-.+..|.+-|++-- ++ ...+.. .++...++--++.|+.+ +.+- ++.+++
T Consensus 486 a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse 565 (953)
T KOG0736|consen 486 ARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSE 565 (953)
T ss_pred HhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCH
Confidence 34446677777776411 11 111111 12222333444444433 2222 888999
Q ss_pred HHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 124 QESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 124 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
++-.++|+.+........ ....+..+.+|.|.-
T Consensus 566 ~qRl~iLq~y~~~~~~n~----~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 566 EQRLEILQWYLNHLPLNQ----DVNLKQLARKTSGFS 598 (953)
T ss_pred HHHHHHHHHHHhccccch----HHHHHHHHHhcCCCC
Confidence 999999988875544211 222445566665543
No 457
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.30 E-value=0.018 Score=44.62 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 038724 20 GIIGLFGTGGVGKTTILKQIN 40 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~ 40 (483)
..++|.|++|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 589999999999999999985
No 458
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.30 E-value=0.033 Score=49.31 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=51.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcc-cCCC-----------CCCEEEEEEeCCCcC----ccchhHHh-------hhcCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFC-SERP-----------GFDVVIWVVVSKELK----LETSQDDM-------ILSTK 76 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~-~~~~-----------~f~~~~~v~~~~~~~----~~~~~~~i-------~l~~~ 76 (483)
.+++|+|+.|.||||+.+.++.... ...+ .++. .+.......+ ...+..++ .....
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dq-i~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~ 108 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDR-IFTRIGAEDSISDGRSTFMAELLELKEILSLATP 108 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCE-EEEEecCcccccCCceeHHHHHHHHHHHHHhccC
Confidence 6899999999999999999983210 0011 1121 2222222111 11112222 55578
Q ss_pred cEEEEEcCCCCcccc-------ccccCCCCCCCCCCEEEEecCChhhh
Q 038724 77 KFLLLLDDLWETIDL-------SKIGVPLPSQKIVSKVVFTTHSEEVC 117 (483)
Q Consensus 77 ~~LlvlDdv~~~~~~-------~~l~~~~~~~~~gs~ilvTtR~~~~~ 117 (483)
+-++++|+.-..-+. ..+...+. ..++.+|++|.+....
T Consensus 109 ~~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~ 154 (202)
T cd03243 109 RSLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELA 154 (202)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHH
Confidence 999999998543221 11122222 2357788888876554
No 459
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.29 E-value=0.017 Score=52.15 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|.+|.||||+++.+..-.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCc
Confidence 489999999999999999998755
No 460
>PRK06851 hypothetical protein; Provisional
Probab=95.28 E-value=0.026 Score=54.13 Aligned_cols=47 Identities=32% Similarity=0.355 Sum_probs=35.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCcc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLE 65 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~ 65 (483)
+--+++.|.|++|+||||++++++... .+..++..++-|.+.+-.++
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a--~~~G~~v~~~hC~~dPdslD 258 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAA--EERGFDVEVYHCGFDPDSLD 258 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHH--HhCCCeEEEEeCCCCCCCcc
Confidence 345789999999999999999999987 24567776666666554433
No 461
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.28 E-value=0.015 Score=49.95 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|+|+|+.|.||||+|+.+++..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999999875
No 462
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.28 E-value=0.035 Score=54.51 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|.|-+|+|||+|+..++++.
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~ 165 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQA 165 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhh
Confidence 478999999999999999999876
No 463
>PRK15453 phosphoribulokinase; Provisional
Probab=95.27 E-value=0.017 Score=52.88 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....+|+|.|.+|.||||+|+++++.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998765
No 464
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.27 E-value=0.03 Score=58.05 Aligned_cols=55 Identities=11% Similarity=0.180 Sum_probs=43.3
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVS 59 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~ 59 (483)
+|.++.++.|..++... +.+.++|++|+||||+|+.+++... ..+++..+|..-+
T Consensus 34 igq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np 88 (637)
T PRK13765 34 IGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNP 88 (637)
T ss_pred CChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCC
Confidence 57788888888878766 4799999999999999999998762 3345677787543
No 465
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.26 E-value=0.049 Score=54.01 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHhhccc----CCCCCCEEEEEEeCCCcC-ccchhHHh----------------------
Q 038724 20 GIIGLFGTGGVGKTTIL-KQINNRFCS----ERPGFDVVIWVVVSKELK-LETSQDDM---------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa-~~~~~~~~~----~~~~f~~~~~v~~~~~~~-~~~~~~~i---------------------- 71 (483)
..++|.|..|+|||+|| ..+.++... ....-+.++++-+++... ..++.+.+
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 46899999999999997 556665410 112345677777766543 33333333
Q ss_pred ---------------hhcCCcEEEEEcCCCC
Q 038724 72 ---------------ILSTKKFLLLLDDLWE 87 (483)
Q Consensus 72 ---------------~l~~~~~LlvlDdv~~ 87 (483)
.-+++.+|+|+||+..
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 3468999999999853
No 466
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.25 E-value=0.026 Score=52.05 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=30.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK 60 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~ 60 (483)
-+++.|+|++|+|||++|.+++... ...-+.++|++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~---a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQ---ASRGNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecC
Confidence 4689999999999999999987654 12245678888764
No 467
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.24 E-value=0.017 Score=46.10 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 038724 22 IGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|.|.|..|+|||||.+.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998766
No 468
>PRK12338 hypothetical protein; Provisional
Probab=95.24 E-value=0.018 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.+|.|.|.+|+||||+|.+++.+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999976
No 469
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.22 E-value=0.033 Score=57.77 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=39.1
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEE
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVV 57 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~ 57 (483)
+|.++.++.+..++.... .+.++|++|+|||++|+++++... ...|...+++.
T Consensus 21 iG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~ 73 (608)
T TIGR00764 21 IGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYP 73 (608)
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEe
Confidence 577788888888777663 666999999999999999998772 22344444443
No 470
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.21 E-value=0.022 Score=49.59 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++.|+|++|+||+|++..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3689999999999999999998865
No 471
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=95.20 E-value=0.042 Score=54.62 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=44.9
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCE-EEEEEeCCCc-CccchhHHh-------------------------
Q 038724 20 GIIGLFGTGGVGKTTIL-KQINNRFCSERPGFDV-VIWVVVSKEL-KLETSQDDM------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa-~~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i------------------------- 71 (483)
..++|.|..|+|||+|| ..+.++. .-+. ++++-+++.. ...++.+.+
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q~-----~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ 237 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQK-----GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYI 237 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHhc-----CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHH
Confidence 47899999999999996 5777754 2343 5667666543 344455444
Q ss_pred ------------hhcCCcEEEEEcCCCCc
Q 038724 72 ------------ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 72 ------------~l~~~~~LlvlDdv~~~ 88 (483)
.-+++.+|+|+||+...
T Consensus 238 ap~~a~aiAEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 238 APYAATSIGEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcChhHH
Confidence 45789999999998533
No 472
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.20 E-value=0.014 Score=48.76 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++.|+|.+|.||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 473
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.19 E-value=0.059 Score=53.31 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.-..++|+|..|+|||||++.++...
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999887754
No 474
>PLN02165 adenylate isopentenyltransferase
Probab=95.19 E-value=0.011 Score=55.59 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=24.8
Q ss_pred hcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 15 VKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 15 ~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+....+++|+|+.|+|||+||..++...
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 34445689999999999999999999876
No 475
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.18 E-value=0.025 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.741 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|.|-||+||||+|..++...
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~l 24 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVAL 24 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 57888999999999999988876
No 476
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=95.17 E-value=0.05 Score=53.84 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|.|..|+|||||++.++...
T Consensus 164 q~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 164 QRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998755
No 477
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.17 E-value=0.013 Score=53.71 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.++|++|+||||+|+++++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999876
No 478
>PRK14532 adenylate kinase; Provisional
Probab=95.16 E-value=0.016 Score=50.59 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 038724 22 IGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|.|.|++|.||||+|+.+++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999998865
No 479
>PRK04182 cytidylate kinase; Provisional
Probab=95.13 E-value=0.019 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|.|+.|.||||+|+.++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999876
No 480
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.12 E-value=0.017 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 038724 22 IGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|.|.|++|+||||+|+.++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998865
No 481
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.12 E-value=0.075 Score=42.94 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=29.8
Q ss_pred CCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEe
Q 038724 317 CPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLD 395 (483)
Q Consensus 317 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~ 395 (483)
+++|+.+.+.. .+..+....|..+++|+.+.+..+ +...-...+..+.+|+++.+.. .+..++.. +..+++|+.++
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 34455555543 344455554555555555555543 2222223344444555555543 33334333 33455555555
Q ss_pred cCC
Q 038724 396 MDD 398 (483)
Q Consensus 396 l~~ 398 (483)
+..
T Consensus 88 ~~~ 90 (129)
T PF13306_consen 88 IPS 90 (129)
T ss_dssp ETT
T ss_pred cCc
Confidence 544
No 482
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.12 E-value=0.037 Score=46.69 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=28.1
Q ss_pred ChhHHHHHHHHHh---cCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 3 NPKQFYQVWRFLV---KKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 3 r~~~~~~l~~~l~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++.++.+.+.+. ......|+++|++|+|||||..++..+.
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 83 KGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred HHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence 3444555555442 1223467899999999999999997754
No 483
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=95.11 E-value=0.025 Score=53.20 Aligned_cols=24 Identities=29% Similarity=0.655 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|+|-||+||||+|..++.-.
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~L 24 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMM 24 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478888999999999999998876
No 484
>PLN02348 phosphoribulokinase
Probab=95.09 E-value=0.025 Score=54.44 Aligned_cols=27 Identities=30% Similarity=0.633 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+...+|+|.|.+|.||||+|+.+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999877
No 485
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.09 E-value=0.054 Score=47.89 Aligned_cols=96 Identities=24% Similarity=0.198 Sum_probs=52.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcc------------cCCCCCCEEEEEEeCCCcCc----c-------chhHHhhhcC
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFC------------SERPGFDVVIWVVVSKELKL----E-------TSQDDMILST 75 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~------------~~~~~f~~~~~v~~~~~~~~----~-------~~~~~i~l~~ 75 (483)
.++++|+|+.|.||||+.+.++--.. ..-..|+. ++.......+. . ++..-+....
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~-I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~ 107 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNR-LLSRLSNDDSMERNLSTFASEMSETAYILDYAD 107 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhh-eeEecCCccccchhhhHHHHHHHHHHHHHHhcC
Confidence 37899999999999999988752110 00011222 22222221111 1 1111125567
Q ss_pred CcEEEEEcCCCCcc---c----cccccCCCCCCCCCCEEEEecCChhhh
Q 038724 76 KKFLLLLDDLWETI---D----LSKIGVPLPSQKIVSKVVFTTHSEEVC 117 (483)
Q Consensus 76 ~~~LlvlDdv~~~~---~----~~~l~~~~~~~~~gs~ilvTtR~~~~~ 117 (483)
++-|+++|+..... + ...+...+.. .++.++++|.+....
T Consensus 108 ~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~ 154 (204)
T cd03282 108 GDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIA 154 (204)
T ss_pred CCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHH
Confidence 88899999984332 1 1122222322 268899999987654
No 486
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.08 E-value=0.02 Score=49.08 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|+|+.|.||||+|+.+++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 487
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.08 E-value=0.022 Score=47.22 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++|+|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999998876644
No 488
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.08 E-value=0.017 Score=51.88 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|.|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 489
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.07 E-value=0.074 Score=45.21 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 038724 22 IGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|+|+|.+|+|||||..++....
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhc
Confidence 6899999999999999987643
No 490
>PRK13768 GTPase; Provisional
Probab=95.07 E-value=0.031 Score=51.36 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|.|+||+||||++..++...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 578999999999999999988766
No 491
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.07 E-value=0.031 Score=53.35 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=34.0
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||-++....|.-.+.+....-|.|.|..|.||||+|+.+++-.
T Consensus 20 vGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 20 VGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred hChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 5666666677666666667778899999999999999996554
No 492
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.07 E-value=0.021 Score=48.11 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.|+++||.|+||||+.+++++..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 468899999999999999999987
No 493
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=95.06 E-value=0.03 Score=52.80 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++|+|.|-||+||||.+..++...
T Consensus 4 ~~~iai~~KGGvGKTt~~~nLa~~l 28 (295)
T PRK13234 4 LRQIAFYGKGGIGKSTTSQNTLAAL 28 (295)
T ss_pred ceEEEEECCCCccHHHHHHHHHHHH
Confidence 3688888999999999998877655
No 494
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.06 E-value=0.05 Score=51.62 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 495
>PRK06761 hypothetical protein; Provisional
Probab=95.06 E-value=0.042 Score=50.80 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|.|.|++|+||||+++.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999987
No 496
>PRK06851 hypothetical protein; Provisional
Probab=95.05 E-value=0.033 Score=53.48 Aligned_cols=49 Identities=31% Similarity=0.431 Sum_probs=36.3
Q ss_pred cCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccc
Q 038724 16 KKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLET 66 (483)
Q Consensus 16 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~ 66 (483)
....+++.|.|.+|+||||+++++.+... ...|+...+.+.+++-.++-
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~--~~g~~Ve~~~~~~d~~slDg 75 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFL--EKGYDVEFLHCSSDNDSLDG 75 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEcCCCCCceee
Confidence 34557999999999999999999999872 23577666666665544443
No 497
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.05 E-value=0.028 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.826 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|++.|-||+||||++..++...
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~L 24 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAF 24 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHH
Confidence 47788999999999998887765
No 498
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.04 E-value=0.02 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
-.|+|.|++|+|||||.+.++--.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999997643
No 499
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.04 E-value=0.065 Score=50.93 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=27.4
Q ss_pred HHHHHHh--cCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 9 QVWRFLV--KKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 9 ~l~~~l~--~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++.+.+. .+...+|+|.|++|+|||||+.++....
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444443 3467799999999999999999987776
No 500
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.03 E-value=0.069 Score=52.70 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
-..++|.|..|+|||||.+.++...
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCCC
Confidence 3578999999999999999998755
Done!