Query 038724
Match_columns 483
No_of_seqs 304 out of 2747
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 03:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.5E-40 5.2E-45 339.5 10.5 271 1-294 131-466 (549)
2 1vt4_I APAF-1 related killer D 100.0 4E-35 1.4E-39 304.2 11.8 246 1-290 131-434 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 7.2E-34 2.5E-38 319.4 16.6 265 1-293 127-446 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 9.5E-32 3.3E-36 278.5 13.8 265 1-294 127-447 (591)
5 4fcg_A Uncharacterized protein 99.7 1.4E-17 4.7E-22 158.9 11.3 167 288-455 96-289 (328)
6 1ogq_A PGIP-2, polygalacturona 99.7 6.8E-17 2.3E-21 153.1 11.3 114 289-402 69-187 (313)
7 1ozn_A Reticulon 4 receptor; N 99.7 1.3E-16 4.3E-21 149.3 12.9 174 283-456 43-238 (285)
8 2o6q_A Variable lymphocyte rec 99.7 3E-16 1E-20 145.5 14.4 163 282-455 47-217 (270)
9 2o6q_A Variable lymphocyte rec 99.7 3.7E-16 1.2E-20 144.9 14.9 157 296-463 37-201 (270)
10 3m19_A Variable lymphocyte rec 99.7 2.9E-16 9.8E-21 143.9 13.9 150 296-456 35-192 (251)
11 3zyi_A Leucine-rich repeat-con 99.7 2.2E-16 7.5E-21 157.7 14.2 172 286-457 89-280 (452)
12 3zyj_A Leucine-rich repeat-con 99.7 2E-16 6.9E-21 157.4 13.3 154 283-437 99-268 (440)
13 3rfs_A Internalin B, repeat mo 99.7 3.2E-16 1.1E-20 145.4 13.0 153 292-455 59-217 (272)
14 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.7E-21 140.3 9.9 149 293-456 41-194 (197)
15 3m19_A Variable lymphocyte rec 99.7 6.8E-16 2.3E-20 141.4 14.5 168 297-476 15-189 (251)
16 1p9a_G Platelet glycoprotein I 99.7 6E-16 2E-20 144.8 12.9 145 283-439 42-187 (290)
17 4fcg_A Uncharacterized protein 99.7 2.5E-16 8.4E-21 150.2 10.1 160 295-456 80-266 (328)
18 2v9t_B SLIT homolog 2 protein 99.7 5.6E-16 1.9E-20 138.8 11.8 135 296-441 32-169 (220)
19 3rfs_A Internalin B, repeat mo 99.7 8.5E-16 2.9E-20 142.5 13.3 155 293-460 38-198 (272)
20 1ozn_A Reticulon 4 receptor; N 99.6 1.4E-15 4.7E-20 142.2 14.8 166 295-460 31-218 (285)
21 3e6j_A Variable lymphocyte rec 99.6 1.1E-15 3.9E-20 137.7 12.9 134 296-440 40-175 (229)
22 2z62_A TOLL-like receptor 4, v 99.6 6.4E-16 2.2E-20 143.8 11.2 167 284-461 40-218 (276)
23 2z62_A TOLL-like receptor 4, v 99.6 1E-15 3.5E-20 142.3 12.6 163 282-456 62-237 (276)
24 1ogq_A PGIP-2, polygalacturona 99.6 7E-16 2.4E-20 146.1 10.7 175 282-457 87-282 (313)
25 1p9a_G Platelet glycoprotein I 99.6 1.9E-15 6.7E-20 141.3 13.5 152 296-461 31-190 (290)
26 3zyj_A Leucine-rich repeat-con 99.6 2E-15 6.9E-20 150.1 13.5 180 283-475 75-264 (440)
27 3zyi_A Leucine-rich repeat-con 99.6 1.9E-15 6.5E-20 150.9 13.2 180 296-475 75-275 (452)
28 2o6s_A Variable lymphocyte rec 99.6 2.1E-15 7.2E-20 133.9 11.7 149 295-456 27-178 (208)
29 2v70_A SLIT-2, SLIT homolog 2 99.6 2.6E-15 9E-20 134.4 12.0 134 297-441 33-170 (220)
30 1xeu_A Internalin C; cellular 99.6 5.4E-15 1.8E-19 136.2 14.0 152 292-462 37-191 (263)
31 3e6j_A Variable lymphocyte rec 99.6 3.1E-15 1.1E-19 134.8 12.1 146 298-456 21-172 (229)
32 2v70_A SLIT-2, SLIT homolog 2 99.6 2E-15 6.7E-20 135.2 10.4 146 299-456 14-166 (220)
33 2v9t_B SLIT homolog 2 protein 99.6 2.7E-15 9.1E-20 134.4 11.2 146 299-456 14-165 (220)
34 1h6u_A Internalin H; cell adhe 99.6 5.5E-15 1.9E-19 139.5 14.0 153 292-462 81-236 (308)
35 2z66_A Variable lymphocyte rec 99.6 1.4E-15 4.8E-20 143.7 9.9 154 292-456 97-261 (306)
36 1h6u_A Internalin H; cell adhe 99.6 5.4E-15 1.8E-19 139.6 13.8 149 292-458 59-210 (308)
37 2z80_A TOLL-like receptor 2, v 99.6 2E-15 7E-20 145.6 10.7 120 284-404 64-189 (353)
38 3rgz_A Protein brassinosteroid 99.6 5.1E-15 1.8E-19 157.5 14.6 121 284-404 430-553 (768)
39 3rgz_A Protein brassinosteroid 99.6 3.8E-15 1.3E-19 158.5 13.5 176 282-457 452-718 (768)
40 3oja_B Anopheles plasmodium-re 99.6 2.5E-15 8.6E-20 155.3 11.6 102 281-382 84-187 (597)
41 1h6t_A Internalin B; cell adhe 99.6 9.7E-15 3.3E-19 136.6 14.4 154 292-463 64-220 (291)
42 2id5_A Lingo-1, leucine rich r 99.6 5.5E-15 1.9E-19 148.7 13.3 178 282-459 66-288 (477)
43 1xku_A Decorin; proteoglycan, 99.6 8.3E-15 2.8E-19 139.9 13.6 181 281-464 85-284 (330)
44 2z80_A TOLL-like receptor 2, v 99.6 1.5E-15 5.1E-20 146.6 7.9 162 296-458 52-237 (353)
45 1h6t_A Internalin B; cell adhe 99.6 5.6E-15 1.9E-19 138.3 11.3 148 293-458 43-193 (291)
46 2id5_A Lingo-1, leucine rich r 99.6 4.8E-15 1.6E-19 149.1 11.7 125 281-405 41-168 (477)
47 2xot_A Amphoterin-induced prot 99.6 2.6E-15 8.9E-20 145.2 9.2 136 296-439 39-178 (361)
48 4ezg_A Putative uncharacterize 99.6 6.4E-15 2.2E-19 129.6 10.8 134 291-438 61-195 (197)
49 3o6n_A APL1; leucine-rich repe 99.6 7.7E-15 2.6E-19 143.6 12.5 118 285-403 58-179 (390)
50 3o6n_A APL1; leucine-rich repe 99.6 1E-14 3.5E-19 142.7 13.3 180 279-460 76-289 (390)
51 2xot_A Amphoterin-induced prot 99.6 3.7E-15 1.3E-19 144.1 9.9 153 299-463 21-183 (361)
52 2z66_A Variable lymphocyte rec 99.6 5.4E-15 1.8E-19 139.6 10.6 173 293-476 75-258 (306)
53 2xwt_C Thyrotropin receptor; s 99.6 4.3E-15 1.5E-19 135.0 9.3 157 291-461 50-223 (239)
54 3v47_A TOLL-like receptor 5B a 99.6 8.2E-15 2.8E-19 146.5 12.0 89 292-380 75-168 (455)
55 4g8a_A TOLL-like receptor 4; l 99.6 3.8E-15 1.3E-19 155.2 9.9 134 296-439 52-188 (635)
56 2ft3_A Biglycan; proteoglycan, 99.6 1.1E-14 3.7E-19 139.2 12.2 181 281-465 87-286 (332)
57 3vq2_A TLR4, TOLL-like recepto 99.6 4.7E-15 1.6E-19 153.8 10.0 133 296-438 32-167 (606)
58 4eco_A Uncharacterized protein 99.6 1.9E-15 6.5E-20 157.2 7.0 173 283-456 194-415 (636)
59 3oja_B Anopheles plasmodium-re 99.6 1.5E-14 5.2E-19 149.4 13.7 175 282-457 61-246 (597)
60 2ell_A Acidic leucine-rich nuc 99.6 7.8E-15 2.7E-19 125.5 9.6 134 296-439 24-162 (168)
61 1m9s_A Internalin B; cell inva 99.6 2.5E-14 8.4E-19 146.8 15.0 156 292-465 61-219 (605)
62 2xwt_C Thyrotropin receptor; s 99.6 4.5E-15 1.6E-19 134.8 8.5 159 296-466 31-203 (239)
63 3t6q_A CD180 antigen; protein- 99.6 1.9E-14 6.5E-19 149.2 14.2 123 282-404 264-391 (606)
64 2o6s_A Variable lymphocyte rec 99.6 3.3E-14 1.1E-18 126.2 13.5 146 299-456 10-161 (208)
65 3v47_A TOLL-like receptor 5B a 99.6 3.1E-14 1.1E-18 142.3 14.2 75 385-459 295-387 (455)
66 1w8a_A SLIT protein; signaling 99.6 1.6E-14 5.3E-19 126.4 10.6 132 299-442 11-144 (192)
67 4ecn_A Leucine-rich repeat pro 99.5 4.1E-15 1.4E-19 158.0 8.1 169 288-456 440-657 (876)
68 2ft3_A Biglycan; proteoglycan, 99.5 3E-14 1E-18 136.2 13.0 171 284-458 66-256 (332)
69 1wwl_A Monocyte differentiatio 99.5 1.8E-14 6.2E-19 136.4 10.7 107 295-402 94-214 (312)
70 1m9s_A Internalin B; cell inva 99.5 2.2E-14 7.4E-19 147.2 11.7 148 293-458 40-190 (605)
71 3oja_A Leucine-rich immune mol 99.5 1.3E-14 4.5E-19 145.8 9.7 122 282-403 44-183 (487)
72 1wwl_A Monocyte differentiatio 99.5 6E-15 2.1E-19 139.6 6.6 188 280-479 103-309 (312)
73 4eco_A Uncharacterized protein 99.5 5E-15 1.7E-19 154.0 6.6 140 315-456 203-390 (636)
74 2wfh_A SLIT homolog 2 protein 99.5 5.9E-14 2E-18 122.8 12.3 132 299-443 13-145 (193)
75 2z63_A TOLL-like receptor 4, v 99.5 1.7E-14 5.7E-19 148.5 9.9 154 296-459 28-193 (570)
76 2z7x_B TOLL-like receptor 1, v 99.5 2.1E-14 7E-19 146.1 10.3 144 299-455 3-150 (520)
77 1xku_A Decorin; proteoglycan, 99.5 8.3E-14 2.8E-18 133.0 13.9 114 290-404 165-278 (330)
78 4fmz_A Internalin; leucine ric 99.5 8.8E-14 3E-18 133.7 14.1 109 292-404 84-192 (347)
79 4glp_A Monocyte differentiatio 99.5 1.7E-14 5.8E-19 136.4 8.6 170 279-458 98-287 (310)
80 3vq2_A TLR4, TOLL-like recepto 99.5 3.3E-14 1.1E-18 147.4 11.5 146 293-438 373-535 (606)
81 1a9n_A U2A', U2A'; complex (nu 99.5 3E-14 1E-18 122.8 8.5 133 293-436 16-152 (176)
82 4g8a_A TOLL-like receptor 4; l 99.5 6.1E-14 2.1E-18 146.1 12.6 149 301-461 36-191 (635)
83 2z81_A CD282 antigen, TOLL-lik 99.5 2E-14 6.8E-19 147.3 8.4 162 296-457 26-210 (549)
84 2je0_A Acidic leucine-rich nuc 99.5 3.4E-14 1.2E-18 118.9 8.3 128 295-432 16-148 (149)
85 3t6q_A CD180 antigen; protein- 99.5 8.4E-14 2.9E-18 144.4 12.8 176 292-475 346-532 (606)
86 2z81_A CD282 antigen, TOLL-lik 99.5 4.1E-14 1.4E-18 144.9 10.3 177 281-457 35-237 (549)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 6.7E-14 2.3E-18 143.7 11.7 145 298-455 33-181 (562)
88 2o6r_A Variable lymphocyte rec 99.5 2E-13 6.8E-18 117.7 12.7 128 299-438 10-138 (177)
89 3bz5_A Internalin-J, INLJ; leu 99.5 1.6E-13 5.5E-18 136.7 13.6 161 294-465 62-234 (457)
90 3o53_A Protein LRIM1, AGAP0063 99.5 4.6E-14 1.6E-18 133.9 9.1 146 297-456 100-250 (317)
91 4fmz_A Internalin; leucine ric 99.5 1.5E-13 5E-18 132.2 12.7 160 294-458 42-214 (347)
92 2ell_A Acidic leucine-rich nuc 99.5 9.4E-14 3.2E-18 118.7 10.0 131 315-458 21-162 (168)
93 1xeu_A Internalin C; cellular 99.5 1.3E-14 4.6E-19 133.5 5.0 145 295-458 18-165 (263)
94 2z63_A TOLL-like receptor 4, v 99.5 1.4E-13 4.8E-18 141.6 13.0 118 287-404 43-164 (570)
95 1ziw_A TOLL-like receptor 3; i 99.5 1.6E-13 5.5E-18 144.3 13.6 172 283-459 392-576 (680)
96 4glp_A Monocyte differentiatio 99.5 9.8E-14 3.4E-18 131.2 10.7 160 295-463 90-271 (310)
97 1o6v_A Internalin A; bacterial 99.5 1E-13 3.4E-18 138.9 11.2 101 297-402 47-147 (466)
98 1ziw_A TOLL-like receptor 3; i 99.5 3.2E-13 1.1E-17 142.0 15.0 178 281-458 58-287 (680)
99 3o53_A Protein LRIM1, AGAP0063 99.5 7.6E-14 2.6E-18 132.4 9.2 165 281-458 43-229 (317)
100 3j0a_A TOLL-like receptor 5; m 99.5 1.2E-13 4.1E-18 148.5 11.9 153 294-456 22-187 (844)
101 2je0_A Acidic leucine-rich nuc 99.5 1.3E-13 4.3E-18 115.3 9.5 123 316-451 15-148 (149)
102 3j0a_A TOLL-like receptor 5; m 99.5 1.2E-13 3.9E-18 148.6 11.0 148 299-458 7-163 (844)
103 3oja_A Leucine-rich immune mol 99.5 8.6E-14 2.9E-18 139.9 9.3 147 296-456 99-250 (487)
104 1a9n_A U2A', U2A'; complex (nu 99.5 8.7E-14 3E-18 119.9 7.6 136 308-456 9-153 (176)
105 2z7x_B TOLL-like receptor 1, v 99.5 2.5E-13 8.5E-18 138.1 11.8 142 315-456 321-481 (520)
106 4ecn_A Leucine-rich repeat pro 99.4 4.9E-13 1.7E-17 142.2 14.3 87 318-405 673-769 (876)
107 1o6v_A Internalin A; bacterial 99.4 8.6E-13 2.9E-17 132.1 14.1 162 294-460 219-392 (466)
108 3bz5_A Internalin-J, INLJ; leu 99.4 9.5E-13 3.3E-17 131.1 14.3 150 292-463 102-253 (457)
109 1dce_A Protein (RAB geranylger 99.4 1E-13 3.5E-18 141.4 5.4 107 319-439 442-548 (567)
110 2fna_A Conserved hypothetical 99.4 1.1E-12 3.6E-17 126.6 11.5 156 1-171 16-254 (357)
111 4b8c_D Glucose-repressible alc 99.4 2.8E-13 9.4E-18 142.5 7.8 116 287-404 215-331 (727)
112 3g06_A SSPH2 (leucine-rich rep 99.4 1.9E-12 6.4E-17 133.1 13.5 52 296-353 61-112 (622)
113 3g06_A SSPH2 (leucine-rich rep 99.4 2.3E-12 7.9E-17 132.4 14.0 97 295-404 100-196 (622)
114 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 8.9E-13 3E-17 135.3 10.9 149 293-455 350-509 (562)
115 2ast_B S-phase kinase-associat 99.4 1.5E-13 5.2E-18 131.4 4.7 151 294-454 91-258 (336)
116 3cvr_A Invasion plasmid antige 99.4 1.7E-12 5.7E-17 131.9 12.4 96 296-404 80-175 (571)
117 1dce_A Protein (RAB geranylger 99.4 9.5E-13 3.3E-17 134.2 10.6 123 297-430 442-566 (567)
118 2wfh_A SLIT homolog 2 protein 99.4 1.7E-12 5.9E-17 113.4 10.6 107 296-402 31-139 (193)
119 2r9u_A Variable lymphocyte rec 99.4 2.8E-12 9.5E-17 110.0 11.3 105 299-404 15-120 (174)
120 1w8a_A SLIT protein; signaling 99.4 1.5E-12 5.1E-17 113.8 9.7 107 297-403 30-140 (192)
121 3g39_A Variable lymphocyte rec 99.4 2.8E-12 9.5E-17 109.6 10.9 106 298-404 11-117 (170)
122 2ast_B S-phase kinase-associat 99.4 2.1E-13 7.3E-18 130.4 4.1 165 288-463 110-291 (336)
123 3cvr_A Invasion plasmid antige 99.4 4.8E-12 1.6E-16 128.5 13.8 148 297-459 60-223 (571)
124 1njg_A DNA polymerase III subu 99.4 4.1E-12 1.4E-16 115.5 12.0 167 1-170 26-231 (250)
125 4b8c_D Glucose-repressible alc 99.3 9.6E-13 3.3E-17 138.4 8.4 109 315-437 221-329 (727)
126 2o6r_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 108.9 11.2 110 295-404 27-139 (177)
127 1jl5_A Outer protein YOPM; leu 99.3 1E-11 3.4E-16 123.6 14.2 151 296-456 111-270 (454)
128 2qen_A Walker-type ATPase; unk 99.3 3.1E-12 1.1E-16 123.0 10.2 156 1-170 15-249 (350)
129 1jl5_A Outer protein YOPM; leu 99.3 9.1E-12 3.1E-16 123.9 13.7 100 296-406 91-190 (454)
130 3g39_A Variable lymphocyte rec 99.3 6.7E-12 2.3E-16 107.2 10.3 108 319-440 10-118 (170)
131 2chg_A Replication factor C sm 99.3 4.9E-12 1.7E-16 113.2 9.8 163 1-167 20-204 (226)
132 4ay9_X Follicle-stimulating ho 99.3 3.2E-12 1.1E-16 122.9 9.1 86 297-382 31-120 (350)
133 2r9u_A Variable lymphocyte rec 99.3 9.6E-12 3.3E-16 106.6 10.4 107 320-440 14-121 (174)
134 2ca6_A RAN GTPase-activating p 99.3 8.9E-13 3E-17 128.7 4.4 132 318-456 159-316 (386)
135 2ca6_A RAN GTPase-activating p 99.3 7.8E-13 2.7E-17 129.1 3.6 160 292-458 56-259 (386)
136 1w5s_A Origin recognition comp 99.3 7.3E-12 2.5E-16 123.3 9.8 212 1-225 25-320 (412)
137 1ds9_A Outer arm dynein; leuci 99.3 1.2E-13 4.1E-18 121.5 -3.6 107 316-436 46-152 (198)
138 1ds9_A Outer arm dynein; leuci 99.3 2.1E-13 7.2E-18 119.9 -2.2 152 279-437 25-185 (198)
139 3goz_A Leucine-rich repeat-con 99.2 2.8E-12 9.6E-17 123.9 3.5 157 297-460 52-242 (362)
140 4ay9_X Follicle-stimulating ho 99.2 2E-11 6.7E-16 117.4 9.2 107 299-406 12-121 (350)
141 3goz_A Leucine-rich repeat-con 99.2 2.4E-12 8.2E-17 124.4 2.6 169 281-456 60-266 (362)
142 2ifg_A High affinity nerve gro 99.2 8.5E-11 2.9E-15 112.8 12.0 105 300-404 12-118 (347)
143 2qby_B CDC6 homolog 3, cell di 99.2 3E-10 1E-14 110.5 14.3 206 1-224 23-295 (384)
144 1sxj_B Activator 1 37 kDa subu 99.1 4.8E-11 1.6E-15 113.3 7.8 163 1-167 24-210 (323)
145 2v1u_A Cell division control p 99.1 2.9E-10 9.8E-15 110.8 10.3 209 1-223 22-300 (387)
146 2qby_A CDC6 homolog 1, cell di 99.1 1.1E-10 3.7E-15 113.7 6.7 163 1-164 23-242 (386)
147 1iqp_A RFCS; clamp loader, ext 99.1 2.5E-10 8.7E-15 108.4 8.4 164 1-168 28-213 (327)
148 1fnn_A CDC6P, cell division co 99.0 1.1E-09 3.9E-14 106.6 12.0 162 1-166 20-246 (389)
149 2ifg_A High affinity nerve gro 99.0 6E-10 2E-14 106.9 9.0 109 321-443 11-122 (347)
150 1hqc_A RUVB; extended AAA-ATPa 99.0 6.9E-10 2.3E-14 105.3 8.7 161 1-170 15-214 (324)
151 1z7x_W Ribonuclease inhibitor; 99.0 7.4E-11 2.5E-15 117.8 1.2 161 292-459 24-215 (461)
152 1z7x_W Ribonuclease inhibitor; 99.0 9.4E-11 3.2E-15 117.1 1.8 156 294-460 225-415 (461)
153 2chq_A Replication factor C sm 99.0 3.1E-09 1E-13 100.5 11.8 162 1-166 20-203 (319)
154 1jr3_A DNA polymerase III subu 98.9 4.7E-09 1.6E-13 101.7 12.2 164 1-167 19-221 (373)
155 3un9_A NLR family member X1; l 98.9 4.8E-11 1.7E-15 115.2 -2.1 155 297-458 73-254 (372)
156 3sb4_A Hypothetical leucine ri 98.9 5.5E-09 1.9E-13 99.3 9.7 89 365-466 225-320 (329)
157 1jbk_A CLPB protein; beta barr 98.8 2.5E-09 8.6E-14 92.9 3.4 88 1-88 25-127 (195)
158 3un9_A NLR family member X1; l 98.7 1.1E-09 3.6E-14 105.7 0.2 135 296-437 101-252 (372)
159 3bos_A Putative DNA replicatio 98.7 1.9E-08 6.7E-13 90.7 7.5 156 4-167 37-217 (242)
160 1sxj_D Activator 1 41 kDa subu 98.7 2.7E-08 9.2E-13 95.5 8.1 162 1-166 40-234 (353)
161 3pvs_A Replication-associated 98.6 3E-07 1E-11 90.4 14.1 159 1-167 29-215 (447)
162 3sb4_A Hypothetical leucine ri 98.6 7.6E-08 2.6E-12 91.4 9.5 96 341-449 225-327 (329)
163 3h4m_A Proteasome-activating n 98.6 2E-07 7E-12 86.4 10.9 156 1-166 20-230 (285)
164 3pfi_A Holliday junction ATP-d 98.6 7E-07 2.4E-11 85.0 14.8 158 1-167 32-227 (338)
165 3ogk_B Coronatine-insensitive 98.6 4.8E-08 1.6E-12 100.7 6.9 107 294-401 162-305 (592)
166 3ogk_B Coronatine-insensitive 98.6 5.2E-08 1.8E-12 100.4 6.7 155 297-451 139-326 (592)
167 1sxj_A Activator 1 95 kDa subu 98.6 2.5E-07 8.5E-12 93.2 11.4 156 1-167 42-253 (516)
168 1d2n_A N-ethylmaleimide-sensit 98.5 1.9E-06 6.6E-11 79.2 15.9 159 16-189 61-264 (272)
169 1sxj_E Activator 1 40 kDa subu 98.5 1.4E-07 4.8E-12 90.5 8.2 164 1-167 17-237 (354)
170 3u61_B DNA polymerase accessor 98.5 4.3E-07 1.5E-11 85.9 10.5 154 1-164 29-213 (324)
171 2p65_A Hypothetical protein PF 98.5 8.3E-08 2.8E-12 82.7 5.0 88 1-88 25-127 (187)
172 1xwi_A SKD1 protein; VPS4B, AA 98.5 3E-06 1E-10 79.7 16.1 159 1-167 15-223 (322)
173 1sxj_C Activator 1 40 kDa subu 98.5 3.1E-07 1E-11 87.5 9.0 158 1-163 28-208 (340)
174 1a5t_A Delta prime, HOLB; zinc 98.5 9.8E-07 3.4E-11 83.7 12.1 153 4-165 8-203 (334)
175 3d8b_A Fidgetin-like protein 1 98.5 1.7E-06 5.9E-11 82.8 13.8 158 1-167 87-295 (357)
176 3syl_A Protein CBBX; photosynt 98.5 1.7E-07 5.8E-12 88.0 6.5 134 1-135 34-218 (309)
177 3te6_A Regulatory protein SIR3 98.5 4.6E-07 1.6E-11 84.3 9.0 42 2-43 24-69 (318)
178 3eie_A Vacuolar protein sortin 98.5 1.4E-06 4.7E-11 82.2 12.5 158 1-167 21-228 (322)
179 2p1m_B Transport inhibitor res 98.4 5E-08 1.7E-12 100.5 1.5 15 420-434 310-324 (594)
180 2zan_A Vacuolar protein sortin 98.4 8.3E-06 2.8E-10 80.3 17.1 159 1-167 137-345 (444)
181 2qz4_A Paraplegin; AAA+, SPG7, 98.4 4.1E-06 1.4E-10 76.4 13.1 158 1-166 9-221 (262)
182 2p1m_B Transport inhibitor res 98.4 1.3E-07 4.3E-12 97.5 3.2 107 293-400 102-222 (594)
183 2z4s_A Chromosomal replication 98.4 3.1E-07 1.1E-11 90.4 5.8 154 7-166 117-305 (440)
184 3vfd_A Spastin; ATPase, microt 98.3 2.4E-06 8.1E-11 82.9 11.5 158 1-167 118-326 (389)
185 3b9p_A CG5977-PA, isoform A; A 98.3 9.4E-06 3.2E-10 75.5 15.0 158 1-167 24-233 (297)
186 4fdw_A Leucine rich hypothetic 98.3 2.8E-06 9.6E-11 82.6 10.8 114 284-401 168-283 (401)
187 3uk6_A RUVB-like 2; hexameric 98.3 2.8E-06 9.5E-11 81.8 10.7 43 1-43 47-94 (368)
188 2qp9_X Vacuolar protein sortin 98.3 1.6E-06 5.6E-11 82.8 8.9 158 1-167 54-261 (355)
189 3n70_A Transport activator; si 98.3 5.6E-07 1.9E-11 74.1 4.9 109 1-114 4-116 (145)
190 2ra8_A Uncharacterized protein 98.2 3.9E-07 1.3E-11 87.1 3.3 140 290-437 166-320 (362)
191 1io0_A Tropomodulin; LRR prote 98.2 1.1E-06 3.6E-11 75.7 5.1 114 316-436 34-163 (185)
192 3rw6_A Nuclear RNA export fact 98.2 9E-07 3.1E-11 80.3 4.3 63 339-402 167-233 (267)
193 2gno_A DNA polymerase III, gam 98.2 4.3E-06 1.5E-10 77.8 8.9 132 2-134 1-152 (305)
194 2ra8_A Uncharacterized protein 98.1 2.2E-06 7.6E-11 81.8 6.1 135 315-460 169-324 (362)
195 3cf0_A Transitional endoplasmi 98.1 1.2E-05 4.3E-10 74.8 10.7 152 1-162 18-223 (301)
196 1qvr_A CLPB protein; coiled co 98.1 3.3E-06 1.1E-10 90.4 7.4 132 1-134 173-345 (854)
197 2r62_A Cell division protease 98.1 4.4E-06 1.5E-10 76.5 7.0 43 1-43 14-68 (268)
198 3pxg_A Negative regulator of g 98.1 3.4E-05 1.2E-09 76.5 13.0 130 1-135 183-339 (468)
199 4fdw_A Leucine rich hypothetic 98.0 2.3E-05 7.7E-10 76.1 11.2 77 316-396 178-255 (401)
200 1l8q_A Chromosomal replication 98.0 4.7E-06 1.6E-10 78.7 6.1 147 7-163 23-204 (324)
201 3e4g_A ATP synthase subunit S, 98.0 3.7E-06 1.2E-10 70.7 4.7 36 318-353 61-96 (176)
202 1in4_A RUVB, holliday junction 98.0 7.5E-05 2.6E-09 70.6 14.2 157 1-166 28-222 (334)
203 1io0_A Tropomodulin; LRR prote 98.0 1.8E-06 6E-11 74.3 2.5 109 293-401 33-163 (185)
204 3co5_A Putative two-component 98.0 1.1E-06 3.6E-11 72.3 0.5 104 1-113 7-115 (143)
205 4b4t_J 26S protease regulatory 98.0 0.00011 3.9E-09 70.0 14.4 149 2-160 152-354 (405)
206 1ofh_A ATP-dependent HSL prote 98.0 2.1E-05 7.2E-10 73.6 9.1 43 1-43 18-74 (310)
207 4b4t_L 26S protease subunit RP 98.0 0.00017 5.9E-09 69.8 15.3 149 2-160 185-387 (437)
208 3rw6_A Nuclear RNA export fact 97.9 9.8E-06 3.3E-10 73.4 6.2 33 21-56 26-58 (267)
209 3pxi_A Negative regulator of g 97.9 7.8E-05 2.7E-09 78.8 13.4 131 1-136 183-340 (758)
210 4b4t_I 26S protease regulatory 97.9 0.00021 7.2E-09 68.5 14.6 149 2-160 186-388 (437)
211 1lv7_A FTSH; alpha/beta domain 97.9 5E-05 1.7E-09 68.9 9.9 80 1-86 15-114 (257)
212 4b4t_H 26S protease regulatory 97.9 0.00028 9.5E-09 68.3 14.8 149 2-160 213-415 (467)
213 4fcw_A Chaperone protein CLPB; 97.8 2E-05 7E-10 73.8 6.1 43 1-43 20-71 (311)
214 2w58_A DNAI, primosome compone 97.8 2.2E-05 7.4E-10 68.5 5.7 52 5-59 36-91 (202)
215 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00012 4.2E-09 77.3 12.6 43 1-43 189-231 (758)
216 4b4t_M 26S protease regulatory 97.8 0.00012 4.2E-09 70.8 11.4 149 2-160 185-387 (434)
217 3e4g_A ATP synthase subunit S, 97.8 1.8E-05 6.3E-10 66.4 4.6 84 342-435 61-150 (176)
218 3ec2_A DNA replication protein 97.8 3.7E-06 1.3E-10 72.0 0.0 40 4-43 20-62 (180)
219 3hu3_A Transitional endoplasmi 97.7 5.7E-05 2E-09 74.9 8.4 155 1-165 207-413 (489)
220 2ce7_A Cell division protein F 97.7 0.00023 8E-09 70.0 11.8 150 1-160 19-221 (476)
221 4b4t_K 26S protease regulatory 97.6 0.00053 1.8E-08 66.3 13.2 79 2-86 176-275 (428)
222 2kjq_A DNAA-related protein; s 97.4 0.00022 7.6E-09 58.5 5.9 60 19-88 36-95 (149)
223 3pxi_A Negative regulator of g 97.4 0.00014 4.9E-09 76.8 5.7 84 1-88 494-591 (758)
224 3cf2_A TER ATPase, transitiona 97.4 0.00037 1.3E-08 72.7 8.5 149 2-160 208-407 (806)
225 1jr3_D DNA polymerase III, del 97.3 0.00067 2.3E-08 64.3 8.9 152 10-166 9-184 (343)
226 3m6a_A ATP-dependent protease 97.2 0.00081 2.8E-08 67.8 8.5 25 19-43 108-132 (543)
227 2qgz_A Helicase loader, putati 97.2 0.00039 1.3E-08 64.7 5.7 39 5-43 135-176 (308)
228 2dhr_A FTSH; AAA+ protein, hex 97.2 0.0048 1.6E-07 61.1 13.5 150 1-160 34-236 (499)
229 1iy2_A ATP-dependent metallopr 97.1 0.0029 1E-07 57.9 10.8 22 22-43 76-97 (278)
230 3t15_A Ribulose bisphosphate c 97.0 0.00052 1.8E-08 63.4 4.8 64 18-87 35-110 (293)
231 1ypw_A Transitional endoplasmi 97.0 0.00093 3.2E-08 70.7 7.2 80 1-86 207-307 (806)
232 2x8a_A Nuclear valosin-contain 97.0 0.0026 8.9E-08 58.0 9.1 60 22-87 47-114 (274)
233 1qvr_A CLPB protein; coiled co 96.9 0.00059 2E-08 73.0 5.1 43 1-43 561-612 (854)
234 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00038 1.3E-08 64.2 3.0 62 20-88 124-194 (331)
235 2c9o_A RUVB-like 1; hexameric 96.9 0.00032 1.1E-08 69.3 2.3 84 1-88 40-138 (456)
236 1rz3_A Hypothetical protein rb 96.9 0.0011 3.6E-08 57.6 5.2 42 2-43 2-46 (201)
237 4gt6_A Cell surface protein; l 96.8 0.0058 2E-07 59.0 10.4 123 316-453 263-388 (394)
238 2bjv_A PSP operon transcriptio 96.7 0.002 6.7E-08 58.6 5.8 43 1-43 9-53 (265)
239 3rfe_A Platelet glycoprotein I 96.6 0.0036 1.2E-07 49.8 6.1 54 300-354 12-67 (130)
240 3c8u_A Fructokinase; YP_612366 96.6 0.0018 6E-08 56.5 4.5 39 5-43 6-46 (208)
241 1ojl_A Transcriptional regulat 96.5 0.0021 7.2E-08 59.6 5.0 43 1-43 5-49 (304)
242 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.0022 7.5E-08 63.6 5.3 41 1-43 25-65 (500)
243 3ice_A Transcription terminati 96.5 0.0015 5.1E-08 61.5 3.8 24 20-43 175-198 (422)
244 2orw_A Thymidine kinase; TMTK, 96.5 0.0017 6E-08 55.3 3.8 24 20-43 4-27 (184)
245 1qhx_A CPT, protein (chloramph 96.4 0.0015 5E-08 55.3 3.1 24 20-43 4-27 (178)
246 2r44_A Uncharacterized protein 96.4 0.0018 6.3E-08 60.9 4.1 41 1-43 30-70 (331)
247 3hws_A ATP-dependent CLP prote 96.4 0.0028 9.5E-08 60.5 5.2 43 1-43 18-75 (363)
248 3rfe_A Platelet glycoprotein I 96.4 0.0067 2.3E-07 48.2 6.4 54 346-402 12-68 (130)
249 3kb2_A SPBC2 prophage-derived 96.3 0.0018 6.2E-08 54.3 3.1 24 20-43 2-25 (173)
250 4gt6_A Cell surface protein; l 96.3 0.0056 1.9E-07 59.1 6.8 131 330-474 253-388 (394)
251 2yvu_A Probable adenylyl-sulfa 96.3 0.0023 7.8E-08 54.6 3.5 29 15-43 9-37 (186)
252 3hr8_A Protein RECA; alpha and 96.3 0.0048 1.6E-07 58.2 5.8 52 9-63 48-102 (356)
253 3fwy_A Light-independent proto 96.3 0.0038 1.3E-07 58.0 5.0 27 17-43 46-72 (314)
254 2hf9_A Probable hydrogenase ni 96.3 0.0044 1.5E-07 54.6 5.3 37 7-43 26-62 (226)
255 1ex7_A Guanylate kinase; subst 96.2 0.002 6.9E-08 54.8 2.7 24 20-43 2-25 (186)
256 1odf_A YGR205W, hypothetical 3 96.2 0.0048 1.6E-07 56.7 5.3 27 17-43 29-55 (290)
257 4h09_A Hypothetical leucine ri 96.2 0.021 7.1E-07 54.7 10.0 104 316-433 238-342 (379)
258 2wsm_A Hydrogenase expression/ 96.2 0.004 1.4E-07 54.6 4.5 39 5-43 16-54 (221)
259 3uie_A Adenylyl-sulfate kinase 96.2 0.004 1.4E-07 53.8 4.4 27 17-43 23-49 (200)
260 3lw7_A Adenylate kinase relate 96.1 0.0025 8.7E-08 53.5 3.0 23 20-43 2-24 (179)
261 1ly1_A Polynucleotide kinase; 96.1 0.0031 1.1E-07 53.3 3.5 22 20-41 3-24 (181)
262 1um8_A ATP-dependent CLP prote 96.1 0.0046 1.6E-07 59.3 5.1 25 19-43 72-96 (376)
263 3trf_A Shikimate kinase, SK; a 96.1 0.0027 9.2E-08 54.0 3.0 25 19-43 5-29 (185)
264 3vaa_A Shikimate kinase, SK; s 96.1 0.0027 9.1E-08 54.9 3.0 25 19-43 25-49 (199)
265 1g8p_A Magnesium-chelatase 38 96.1 0.0025 8.7E-08 60.4 2.9 43 1-43 27-69 (350)
266 1nks_A Adenylate kinase; therm 96.1 0.0034 1.2E-07 53.7 3.4 24 20-43 2-25 (194)
267 1zp6_A Hypothetical protein AT 96.0 0.0036 1.2E-07 53.5 3.5 24 20-43 10-33 (191)
268 1kgd_A CASK, peripheral plasma 96.0 0.0032 1.1E-07 53.4 3.1 24 20-43 6-29 (180)
269 3tlx_A Adenylate kinase 2; str 96.0 0.0062 2.1E-07 54.4 5.0 26 18-43 28-53 (243)
270 1u94_A RECA protein, recombina 96.0 0.0049 1.7E-07 58.3 4.5 41 20-63 64-104 (356)
271 1gvn_B Zeta; postsegregational 96.0 0.0068 2.3E-07 55.6 5.3 26 18-43 32-57 (287)
272 1kag_A SKI, shikimate kinase I 96.0 0.0031 1.1E-07 53.0 2.8 24 20-43 5-28 (173)
273 1r6b_X CLPA protein; AAA+, N-t 96.0 0.018 6.2E-07 60.7 9.2 43 1-43 461-512 (758)
274 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0061 2.1E-07 57.0 4.8 40 4-43 5-48 (359)
275 2rhm_A Putative kinase; P-loop 96.0 0.0042 1.4E-07 53.1 3.6 25 19-43 5-29 (193)
276 3end_A Light-independent proto 95.9 0.0066 2.3E-07 56.4 5.0 27 17-43 39-65 (307)
277 2ze6_A Isopentenyl transferase 95.9 0.0041 1.4E-07 56.0 3.4 24 20-43 2-25 (253)
278 2zr9_A Protein RECA, recombina 95.9 0.0064 2.2E-07 57.4 4.8 41 20-63 62-102 (349)
279 1kht_A Adenylate kinase; phosp 95.9 0.0042 1.4E-07 53.1 3.2 24 20-43 4-27 (192)
280 3iij_A Coilin-interacting nucl 95.9 0.0033 1.1E-07 53.3 2.4 25 19-43 11-35 (180)
281 2qor_A Guanylate kinase; phosp 95.9 0.0037 1.3E-07 54.2 2.7 25 19-43 12-36 (204)
282 1ixz_A ATP-dependent metallopr 95.9 0.0081 2.8E-07 54.0 5.1 22 22-43 52-73 (254)
283 3t61_A Gluconokinase; PSI-biol 95.9 0.0036 1.2E-07 54.1 2.6 25 19-43 18-42 (202)
284 3l0o_A Transcription terminati 95.8 0.0036 1.2E-07 58.9 2.7 24 20-43 176-199 (427)
285 4eun_A Thermoresistant glucoki 95.8 0.0044 1.5E-07 53.5 3.1 26 18-43 28-53 (200)
286 1knq_A Gluconate kinase; ALFA/ 95.8 0.0057 1.9E-07 51.4 3.6 25 19-43 8-32 (175)
287 1sky_E F1-ATPase, F1-ATP synth 95.8 0.0078 2.7E-07 58.5 4.9 40 21-62 153-192 (473)
288 3tau_A Guanylate kinase, GMP k 95.8 0.0049 1.7E-07 53.6 3.1 25 19-43 8-32 (208)
289 1ukz_A Uridylate kinase; trans 95.8 0.0067 2.3E-07 52.4 3.9 27 17-43 13-39 (203)
290 4fs7_A Uncharacterized protein 95.8 0.017 5.9E-07 55.6 7.3 123 294-434 251-376 (394)
291 3umf_A Adenylate kinase; rossm 95.7 0.0061 2.1E-07 53.2 3.6 26 18-43 28-53 (217)
292 1tev_A UMP-CMP kinase; ploop, 95.7 0.0057 1.9E-07 52.4 3.4 25 19-43 3-27 (196)
293 1y63_A LMAJ004144AAA protein; 95.7 0.0059 2E-07 51.9 3.5 24 19-42 10-33 (184)
294 1zuh_A Shikimate kinase; alpha 95.7 0.0056 1.9E-07 51.1 3.2 25 19-43 7-31 (168)
295 1n0w_A DNA repair protein RAD5 95.7 0.02 6.8E-07 50.9 7.0 43 20-63 25-71 (243)
296 2iyv_A Shikimate kinase, SK; t 95.7 0.0039 1.3E-07 52.9 2.2 24 20-43 3-26 (184)
297 2bdt_A BH3686; alpha-beta prot 95.7 0.0064 2.2E-07 51.9 3.5 23 20-42 3-25 (189)
298 1via_A Shikimate kinase; struc 95.7 0.0053 1.8E-07 51.7 2.9 23 21-43 6-28 (175)
299 2jaq_A Deoxyguanosine kinase; 95.7 0.0058 2E-07 52.8 3.2 23 21-43 2-24 (205)
300 1tue_A Replication protein E1; 95.7 0.0072 2.5E-07 51.7 3.6 38 6-43 44-82 (212)
301 2c95_A Adenylate kinase 1; tra 95.6 0.0058 2E-07 52.4 3.1 25 19-43 9-33 (196)
302 3cm0_A Adenylate kinase; ATP-b 95.6 0.0067 2.3E-07 51.5 3.4 24 20-43 5-28 (186)
303 3a00_A Guanylate kinase, GMP k 95.6 0.0048 1.6E-07 52.6 2.5 24 20-43 2-25 (186)
304 3tr0_A Guanylate kinase, GMP k 95.6 0.0063 2.1E-07 52.6 3.3 24 20-43 8-31 (205)
305 2ck3_D ATP synthase subunit be 95.6 0.023 8E-07 55.1 7.4 40 20-61 154-193 (482)
306 3ney_A 55 kDa erythrocyte memb 95.6 0.0074 2.5E-07 51.7 3.6 26 18-43 18-43 (197)
307 2grj_A Dephospho-COA kinase; T 95.6 0.0081 2.8E-07 51.4 3.8 26 18-43 11-36 (192)
308 2plr_A DTMP kinase, probable t 95.6 0.0068 2.3E-07 52.7 3.4 24 20-43 5-28 (213)
309 1uf9_A TT1252 protein; P-loop, 95.6 0.0081 2.8E-07 51.8 3.9 26 17-42 6-31 (203)
310 2p5t_B PEZT; postsegregational 95.6 0.0097 3.3E-07 53.5 4.4 26 18-43 31-56 (253)
311 1g41_A Heat shock protein HSLU 95.6 0.0083 2.8E-07 58.2 4.1 43 1-43 18-74 (444)
312 2bwj_A Adenylate kinase 5; pho 95.6 0.0061 2.1E-07 52.4 3.0 24 20-43 13-36 (199)
313 1e6c_A Shikimate kinase; phosp 95.6 0.0052 1.8E-07 51.5 2.4 24 20-43 3-26 (173)
314 1xp8_A RECA protein, recombina 95.5 0.012 4.2E-07 55.8 5.2 41 20-63 75-115 (366)
315 3jvv_A Twitching mobility prot 95.5 0.0087 3E-07 56.6 4.1 92 19-115 123-232 (356)
316 3vr4_D V-type sodium ATPase su 95.5 0.0098 3.3E-07 57.4 4.5 23 21-43 153-175 (465)
317 3dm5_A SRP54, signal recogniti 95.5 0.019 6.6E-07 55.6 6.5 26 18-43 99-124 (443)
318 1qf9_A UMP/CMP kinase, protein 95.5 0.0076 2.6E-07 51.5 3.4 25 19-43 6-30 (194)
319 2if2_A Dephospho-COA kinase; a 95.5 0.0072 2.5E-07 52.3 3.2 21 21-41 3-23 (204)
320 2vli_A Antibiotic resistance p 95.5 0.0055 1.9E-07 51.9 2.4 24 20-43 6-29 (183)
321 2bbw_A Adenylate kinase 4, AK4 95.5 0.0068 2.3E-07 54.3 3.1 25 19-43 27-51 (246)
322 1cke_A CK, MSSA, protein (cyti 95.5 0.007 2.4E-07 53.3 3.2 24 20-43 6-29 (227)
323 2xxa_A Signal recognition part 95.5 0.019 6.7E-07 55.7 6.5 37 7-43 79-124 (433)
324 1jjv_A Dephospho-COA kinase; P 95.5 0.0082 2.8E-07 52.0 3.5 22 20-41 3-24 (206)
325 1ye8_A Protein THEP1, hypothet 95.5 0.0078 2.7E-07 50.8 3.3 23 21-43 2-24 (178)
326 2r8r_A Sensor protein; KDPD, P 95.5 0.0054 1.9E-07 53.4 2.3 23 21-43 8-30 (228)
327 3k1j_A LON protease, ATP-depen 95.5 0.021 7.1E-07 58.4 7.0 41 1-43 44-84 (604)
328 2qt1_A Nicotinamide riboside k 95.5 0.0096 3.3E-07 51.6 3.9 25 19-43 21-45 (207)
329 2pt5_A Shikimate kinase, SK; a 95.5 0.0078 2.7E-07 50.2 3.2 23 21-43 2-24 (168)
330 4gp7_A Metallophosphoesterase; 95.5 0.0067 2.3E-07 50.9 2.8 21 20-40 10-30 (171)
331 4fs7_A Uncharacterized protein 95.5 0.065 2.2E-06 51.5 10.1 139 295-452 229-375 (394)
332 2cdn_A Adenylate kinase; phosp 95.5 0.0076 2.6E-07 52.0 3.2 25 19-43 20-44 (201)
333 2j41_A Guanylate kinase; GMP, 95.4 0.008 2.7E-07 52.0 3.3 24 20-43 7-30 (207)
334 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0089 3E-07 54.0 3.7 25 19-43 4-28 (260)
335 1pgv_A TMD-1, tropomodulin TMD 95.4 0.011 3.9E-07 50.4 4.0 34 366-399 98-136 (197)
336 1uj2_A Uridine-cytidine kinase 95.4 0.0095 3.2E-07 53.5 3.7 26 18-43 21-46 (252)
337 2pbr_A DTMP kinase, thymidylat 95.4 0.0084 2.9E-07 51.3 3.2 23 21-43 2-24 (195)
338 3io5_A Recombination and repai 95.4 0.03 1E-06 51.4 6.9 56 8-64 12-72 (333)
339 1lvg_A Guanylate kinase, GMP k 95.4 0.0066 2.3E-07 52.3 2.5 24 20-43 5-28 (198)
340 3fb4_A Adenylate kinase; psych 95.4 0.0084 2.9E-07 52.4 3.2 23 21-43 2-24 (216)
341 3dl0_A Adenylate kinase; phosp 95.4 0.0089 3E-07 52.2 3.4 23 21-43 2-24 (216)
342 3asz_A Uridine kinase; cytidin 95.3 0.01 3.5E-07 51.6 3.7 25 19-43 6-30 (211)
343 2wwf_A Thymidilate kinase, put 95.3 0.0084 2.9E-07 52.1 3.1 25 19-43 10-34 (212)
344 3lda_A DNA repair protein RAD5 95.3 0.042 1.4E-06 52.7 8.2 43 20-63 179-225 (400)
345 1fx0_B ATP synthase beta chain 95.3 0.031 1E-06 54.5 7.1 50 20-71 166-216 (498)
346 2z43_A DNA repair and recombin 95.3 0.031 1.1E-06 52.2 7.0 48 20-68 108-159 (324)
347 1nn5_A Similar to deoxythymidy 95.3 0.0093 3.2E-07 52.0 3.1 25 19-43 9-33 (215)
348 2cvh_A DNA repair and recombin 95.2 0.014 4.8E-07 50.9 4.3 39 20-64 21-59 (220)
349 1m7g_A Adenylylsulfate kinase; 95.2 0.018 6.3E-07 50.0 5.0 27 17-43 23-49 (211)
350 1zd8_A GTP:AMP phosphotransfer 95.2 0.01 3.5E-07 52.4 3.3 24 20-43 8-31 (227)
351 4h09_A Hypothetical leucine ri 95.2 0.052 1.8E-06 51.8 8.5 105 292-399 236-343 (379)
352 2z0h_A DTMP kinase, thymidylat 95.2 0.011 3.7E-07 50.7 3.3 23 21-43 2-24 (197)
353 1aky_A Adenylate kinase; ATP:A 95.2 0.01 3.5E-07 52.0 3.1 24 20-43 5-28 (220)
354 4a74_A DNA repair and recombin 95.2 0.029 9.9E-07 49.3 6.1 41 20-60 26-69 (231)
355 2v54_A DTMP kinase, thymidylat 95.2 0.011 3.7E-07 51.1 3.2 24 20-43 5-28 (204)
356 1xjc_A MOBB protein homolog; s 95.1 0.011 3.8E-07 49.2 3.0 25 19-43 4-28 (169)
357 1znw_A Guanylate kinase, GMP k 95.1 0.012 4E-07 51.1 3.2 24 20-43 21-44 (207)
358 1v5w_A DMC1, meiotic recombina 95.1 0.048 1.7E-06 51.3 7.7 49 19-68 122-174 (343)
359 3cf2_A TER ATPase, transitiona 95.1 0.0097 3.3E-07 62.2 3.1 61 19-87 511-581 (806)
360 3tqc_A Pantothenate kinase; bi 95.1 0.016 5.3E-07 53.9 4.2 26 18-43 91-116 (321)
361 4e22_A Cytidylate kinase; P-lo 95.1 0.012 4E-07 52.9 3.3 24 20-43 28-51 (252)
362 3d3q_A TRNA delta(2)-isopenten 95.1 0.013 4.5E-07 54.6 3.6 24 20-43 8-31 (340)
363 3gqb_B V-type ATP synthase bet 95.1 0.014 4.8E-07 56.3 3.8 24 20-43 148-171 (464)
364 1s96_A Guanylate kinase, GMP k 95.0 0.012 4.1E-07 51.5 3.0 24 20-43 17-40 (219)
365 3sr0_A Adenylate kinase; phosp 95.0 0.013 4.5E-07 50.7 3.2 23 21-43 2-24 (206)
366 1g8f_A Sulfate adenylyltransfe 95.0 0.017 5.9E-07 57.1 4.4 41 3-43 377-419 (511)
367 3p32_A Probable GTPase RV1496/ 95.0 0.027 9.2E-07 53.4 5.6 35 9-43 67-103 (355)
368 2j37_W Signal recognition part 95.0 0.044 1.5E-06 54.2 7.2 26 18-43 100-125 (504)
369 1htw_A HI0065; nucleotide-bind 95.0 0.016 5.5E-07 47.8 3.5 26 18-43 32-57 (158)
370 3aez_A Pantothenate kinase; tr 94.9 0.016 5.4E-07 53.8 3.8 27 17-43 88-114 (312)
371 3exa_A TRNA delta(2)-isopenten 94.9 0.016 5.3E-07 53.2 3.6 24 20-43 4-27 (322)
372 3crm_A TRNA delta(2)-isopenten 94.9 0.015 5.1E-07 53.8 3.6 25 19-43 5-29 (323)
373 2r9v_A ATP synthase subunit al 94.9 0.021 7.2E-07 55.7 4.7 62 20-86 176-277 (515)
374 2pez_A Bifunctional 3'-phospho 94.9 0.016 5.5E-07 48.9 3.5 25 19-43 5-29 (179)
375 1zak_A Adenylate kinase; ATP:A 94.9 0.013 4.3E-07 51.5 2.9 24 20-43 6-29 (222)
376 1gtv_A TMK, thymidylate kinase 94.9 0.0067 2.3E-07 52.9 1.1 23 21-43 2-24 (214)
377 1z6g_A Guanylate kinase; struc 94.9 0.012 4E-07 51.6 2.7 24 20-43 24-47 (218)
378 2jeo_A Uridine-cytidine kinase 94.9 0.017 5.7E-07 51.6 3.8 25 19-43 25-49 (245)
379 2f6r_A COA synthase, bifunctio 94.9 0.017 5.7E-07 52.8 3.8 24 18-41 74-97 (281)
380 3a8t_A Adenylate isopentenyltr 94.9 0.016 5.5E-07 53.8 3.6 24 20-43 41-64 (339)
381 3cmu_A Protein RECA, recombina 94.9 0.018 6E-07 65.8 4.6 66 18-86 1426-1515(2050)
382 3bh0_A DNAB-like replicative h 94.8 0.03 1E-06 52.1 5.4 38 20-60 69-106 (315)
383 3r20_A Cytidylate kinase; stru 94.8 0.015 5.1E-07 51.2 3.2 24 20-43 10-33 (233)
384 2qmh_A HPR kinase/phosphorylas 94.8 0.017 5.8E-07 49.1 3.3 25 19-43 34-58 (205)
385 2qe7_A ATP synthase subunit al 94.8 0.023 7.9E-07 55.4 4.6 62 20-86 163-264 (502)
386 1vht_A Dephospho-COA kinase; s 94.8 0.018 6.3E-07 50.3 3.7 23 19-41 4-26 (218)
387 3ake_A Cytidylate kinase; CMP 94.8 0.016 5.4E-07 50.1 3.2 23 21-43 4-26 (208)
388 1e4v_A Adenylate kinase; trans 94.8 0.016 5.4E-07 50.5 3.2 23 21-43 2-24 (214)
389 3be4_A Adenylate kinase; malar 94.7 0.016 5.5E-07 50.7 3.2 24 20-43 6-29 (217)
390 2xb4_A Adenylate kinase; ATP-b 94.7 0.016 5.6E-07 50.8 3.2 23 21-43 2-24 (223)
391 3e70_C DPA, signal recognition 94.7 0.027 9.4E-07 52.5 4.7 26 18-43 128-153 (328)
392 1a7j_A Phosphoribulokinase; tr 94.7 0.0093 3.2E-07 54.8 1.5 26 18-43 4-29 (290)
393 3nwj_A ATSK2; P loop, shikimat 94.7 0.013 4.5E-07 52.4 2.4 24 20-43 49-72 (250)
394 3foz_A TRNA delta(2)-isopenten 94.7 0.02 6.8E-07 52.4 3.6 26 18-43 9-34 (316)
395 1fx0_A ATP synthase alpha chai 94.7 0.022 7.5E-07 55.7 4.1 62 20-86 164-265 (507)
396 2dr3_A UPF0273 protein PH0284; 94.6 0.02 6.9E-07 50.9 3.6 39 20-61 24-62 (247)
397 3mfy_A V-type ATP synthase alp 94.6 0.045 1.5E-06 53.9 6.1 38 20-62 228-265 (588)
398 2ehv_A Hypothetical protein PH 94.6 0.018 6.2E-07 51.4 3.2 22 20-41 31-52 (251)
399 1pgv_A TMD-1, tropomodulin TMD 94.6 0.011 3.6E-07 50.6 1.5 111 338-455 37-169 (197)
400 1sq5_A Pantothenate kinase; P- 94.6 0.04 1.4E-06 51.0 5.6 26 18-43 79-104 (308)
401 2c61_A A-type ATP synthase non 94.6 0.021 7.2E-07 55.4 3.7 66 20-85 153-258 (469)
402 1rj9_A FTSY, signal recognitio 94.6 0.019 6.4E-07 53.0 3.3 25 19-43 102-126 (304)
403 1np6_A Molybdopterin-guanine d 94.6 0.02 6.8E-07 48.0 3.1 25 19-43 6-30 (174)
404 1ak2_A Adenylate kinase isoenz 94.5 0.02 6.7E-07 50.7 3.2 24 20-43 17-40 (233)
405 1g5t_A COB(I)alamin adenosyltr 94.5 0.027 9.1E-07 47.9 3.8 24 20-43 29-52 (196)
406 2i3b_A HCR-ntpase, human cance 94.5 0.017 5.9E-07 49.2 2.7 23 21-43 3-25 (189)
407 2afh_E Nitrogenase iron protei 94.5 0.033 1.1E-06 51.0 4.8 24 20-43 3-26 (289)
408 3lnc_A Guanylate kinase, GMP k 94.5 0.014 4.6E-07 51.7 2.1 24 20-43 28-52 (231)
409 1kao_A RAP2A; GTP-binding prot 94.5 0.092 3.2E-06 43.0 7.2 24 20-43 4-27 (167)
410 2i1q_A DNA repair and recombin 94.5 0.067 2.3E-06 49.9 6.9 51 19-69 98-161 (322)
411 3oaa_A ATP synthase subunit al 94.4 0.034 1.2E-06 54.1 4.7 63 20-86 163-264 (513)
412 3iqw_A Tail-anchored protein t 94.3 0.039 1.3E-06 51.6 5.0 49 12-63 9-57 (334)
413 2pcj_A ABC transporter, lipopr 94.3 0.021 7.1E-07 50.2 2.9 33 20-56 31-63 (224)
414 1ltq_A Polynucleotide kinase; 94.3 0.024 8.4E-07 52.2 3.5 23 20-42 3-25 (301)
415 3zvl_A Bifunctional polynucleo 94.3 0.021 7.2E-07 55.4 3.1 26 18-43 257-282 (416)
416 3tif_A Uncharacterized ABC tra 94.3 0.021 7.3E-07 50.5 2.9 33 20-56 32-64 (235)
417 1c1y_A RAS-related protein RAP 94.3 0.13 4.3E-06 42.2 7.6 24 20-43 4-27 (167)
418 2f1r_A Molybdopterin-guanine d 94.3 0.014 4.9E-07 48.7 1.6 24 20-43 3-26 (171)
419 1zu4_A FTSY; GTPase, signal re 94.3 0.046 1.6E-06 50.8 5.2 26 18-43 104-129 (320)
420 2onk_A Molybdate/tungstate ABC 94.2 0.025 8.6E-07 50.2 3.2 33 20-56 25-57 (240)
421 3io3_A DEHA2D07832P; chaperone 94.2 0.033 1.1E-06 52.4 4.2 50 11-61 10-59 (348)
422 3kl4_A SRP54, signal recogniti 94.2 0.042 1.4E-06 53.2 5.0 25 19-43 97-121 (433)
423 1nlf_A Regulatory protein REPA 94.2 0.037 1.3E-06 50.4 4.4 24 20-43 31-54 (279)
424 3b85_A Phosphate starvation-in 94.2 0.021 7.3E-07 49.4 2.6 23 20-42 23-45 (208)
425 1u0j_A DNA replication protein 94.2 0.051 1.7E-06 48.7 5.0 36 8-43 91-128 (267)
426 3vr4_A V-type sodium ATPase ca 94.1 0.051 1.8E-06 53.7 5.4 37 20-61 233-269 (600)
427 2px0_A Flagellar biosynthesis 94.1 0.024 8.2E-07 52.1 3.0 25 19-43 105-129 (296)
428 2og2_A Putative signal recogni 94.1 0.048 1.6E-06 51.4 5.0 25 19-43 157-181 (359)
429 2woj_A ATPase GET3; tail-ancho 94.1 0.046 1.6E-06 51.7 4.9 30 14-43 13-42 (354)
430 3b9q_A Chloroplast SRP recepto 94.1 0.033 1.1E-06 51.4 3.7 25 19-43 100-124 (302)
431 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.029 9.8E-07 49.4 3.2 24 20-43 24-47 (235)
432 2cbz_A Multidrug resistance-as 94.0 0.026 9E-07 50.0 2.9 24 20-43 32-55 (237)
433 1vma_A Cell division protein F 94.0 0.032 1.1E-06 51.5 3.6 26 18-43 103-128 (306)
434 2ck3_A ATP synthase subunit al 94.0 0.036 1.2E-06 54.2 4.1 67 20-86 163-272 (510)
435 4dsu_A GTPase KRAS, isoform 2B 94.0 0.13 4.5E-06 43.2 7.3 24 20-43 5-28 (189)
436 3gfo_A Cobalt import ATP-bindi 94.0 0.026 9E-07 51.2 2.9 33 20-56 35-67 (275)
437 1b0u_A Histidine permease; ABC 94.0 0.027 9.1E-07 50.8 2.9 33 20-56 33-65 (262)
438 2efe_B Small GTP-binding prote 94.0 0.19 6.6E-06 41.8 8.3 24 20-43 13-36 (181)
439 3t1o_A Gliding protein MGLA; G 94.0 0.14 4.9E-06 43.3 7.5 24 20-43 15-38 (198)
440 4bas_A ADP-ribosylation factor 94.0 0.15 5E-06 43.4 7.6 26 18-43 16-41 (199)
441 3f9v_A Minichromosome maintena 93.9 0.019 6.4E-07 58.5 2.0 43 1-43 298-351 (595)
442 3eph_A TRNA isopentenyltransfe 93.9 0.031 1E-06 53.2 3.3 24 20-43 3-26 (409)
443 2yv5_A YJEQ protein; hydrolase 93.9 0.049 1.7E-06 50.3 4.7 23 20-43 166-188 (302)
444 4gzl_A RAS-related C3 botulinu 93.9 0.036 1.2E-06 47.8 3.5 37 7-43 18-54 (204)
445 4eaq_A DTMP kinase, thymidylat 93.9 0.034 1.2E-06 49.0 3.4 25 19-43 26-50 (229)
446 2ged_A SR-beta, signal recogni 93.9 0.055 1.9E-06 45.9 4.6 26 18-43 47-72 (193)
447 2d2e_A SUFC protein; ABC-ATPas 93.9 0.032 1.1E-06 49.9 3.2 23 20-42 30-52 (250)
448 1oix_A RAS-related protein RAB 93.9 0.034 1.1E-06 47.4 3.2 25 19-43 29-53 (191)
449 3cio_A ETK, tyrosine-protein k 93.9 0.091 3.1E-06 48.3 6.4 27 17-43 102-129 (299)
450 1ji0_A ABC transporter; ATP bi 93.9 0.029 1E-06 49.8 2.9 33 20-56 33-65 (240)
451 4g1u_C Hemin import ATP-bindin 93.9 0.029 9.8E-07 50.7 2.9 24 20-43 38-61 (266)
452 2wji_A Ferrous iron transport 93.9 0.04 1.4E-06 45.5 3.7 24 20-43 4-27 (165)
453 2gks_A Bifunctional SAT/APS ki 93.9 0.051 1.8E-06 54.5 5.0 41 3-43 354-396 (546)
454 1m8p_A Sulfate adenylyltransfe 93.9 0.043 1.5E-06 55.4 4.4 26 18-43 395-420 (573)
455 2woo_A ATPase GET3; tail-ancho 93.8 0.059 2E-06 50.4 5.1 29 15-43 15-43 (329)
456 1pzn_A RAD51, DNA repair and r 93.8 0.067 2.3E-06 50.4 5.5 42 19-61 131-176 (349)
457 3tkl_A RAS-related protein RAB 93.8 0.2 6.7E-06 42.4 8.1 25 19-43 16-40 (196)
458 2dyk_A GTP-binding protein; GT 93.8 0.039 1.3E-06 45.1 3.5 24 20-43 2-25 (161)
459 2ocp_A DGK, deoxyguanosine kin 93.8 0.039 1.3E-06 49.0 3.7 25 19-43 2-26 (241)
460 2www_A Methylmalonic aciduria 93.8 0.07 2.4E-06 50.3 5.6 26 18-43 73-98 (349)
461 3bfv_A CAPA1, CAPB2, membrane 93.8 0.1 3.4E-06 47.3 6.5 38 6-43 65-107 (271)
462 1yrb_A ATP(GTP)binding protein 93.8 0.037 1.3E-06 49.8 3.6 26 18-43 13-38 (262)
463 1g6h_A High-affinity branched- 93.8 0.03 1E-06 50.3 2.9 33 20-56 34-66 (257)
464 1zd9_A ADP-ribosylation factor 93.8 0.16 5.3E-06 42.9 7.4 25 19-43 22-46 (188)
465 2olj_A Amino acid ABC transpor 93.8 0.03 1E-06 50.5 2.9 33 20-56 51-83 (263)
466 1sgw_A Putative ABC transporte 93.8 0.026 8.8E-07 49.1 2.3 33 20-56 36-68 (214)
467 2zu0_C Probable ATP-dependent 93.8 0.034 1.2E-06 50.3 3.2 23 20-42 47-69 (267)
468 1tq4_A IIGP1, interferon-induc 93.8 0.049 1.7E-06 52.4 4.5 26 18-43 68-93 (413)
469 3oes_A GTPase rhebl1; small GT 93.8 0.16 5.3E-06 43.4 7.4 26 18-43 23-48 (201)
470 2pze_A Cystic fibrosis transme 93.8 0.032 1.1E-06 49.2 2.9 24 20-43 35-58 (229)
471 2oze_A ORF delta'; para, walke 93.7 0.067 2.3E-06 49.2 5.3 52 6-61 22-76 (298)
472 2ff7_A Alpha-hemolysin translo 93.7 0.032 1.1E-06 49.8 2.9 33 20-56 36-68 (247)
473 2yhs_A FTSY, cell division pro 93.7 0.062 2.1E-06 52.6 5.1 26 18-43 292-317 (503)
474 3cr8_A Sulfate adenylyltranfer 93.7 0.045 1.5E-06 54.9 4.2 25 19-43 369-393 (552)
475 2fg5_A RAB-22B, RAS-related pr 93.7 0.22 7.4E-06 42.1 8.1 25 19-43 23-47 (192)
476 4a1f_A DNAB helicase, replicat 93.7 0.052 1.8E-06 50.7 4.3 38 20-60 47-84 (338)
477 2eyu_A Twitching motility prot 93.7 0.041 1.4E-06 49.5 3.6 26 18-43 24-49 (261)
478 2zej_A Dardarin, leucine-rich 93.7 0.03 1E-06 47.3 2.6 22 21-42 4-25 (184)
479 3fkq_A NTRC-like two-domain pr 93.7 0.1 3.5E-06 49.7 6.5 26 18-43 142-168 (373)
480 1mv5_A LMRA, multidrug resista 93.7 0.036 1.2E-06 49.4 3.1 24 20-43 29-52 (243)
481 2ew1_A RAS-related protein RAB 93.7 0.2 6.8E-06 42.9 7.9 25 19-43 26-50 (201)
482 1cr0_A DNA primase/helicase; R 93.7 0.036 1.2E-06 51.0 3.2 24 20-43 36-59 (296)
483 1vpl_A ABC transporter, ATP-bi 93.7 0.033 1.1E-06 50.0 2.9 33 20-56 42-74 (256)
484 4akg_A Glutathione S-transfera 93.6 0.1 3.5E-06 61.7 7.6 62 20-86 1268-1346(2695)
485 2ghi_A Transport protein; mult 93.6 0.035 1.2E-06 50.0 2.9 32 20-56 47-78 (260)
486 2f9l_A RAB11B, member RAS onco 93.6 0.038 1.3E-06 47.4 3.1 25 19-43 5-29 (199)
487 2ixe_A Antigen peptide transpo 93.6 0.035 1.2E-06 50.3 2.9 33 20-56 46-78 (271)
488 2qi9_C Vitamin B12 import ATP- 93.6 0.035 1.2E-06 49.5 2.9 24 20-43 27-50 (249)
489 2pt7_A CAG-ALFA; ATPase, prote 93.5 0.12 4E-06 48.3 6.5 24 20-43 172-195 (330)
490 1x3s_A RAS-related protein RAB 93.5 0.25 8.5E-06 41.7 8.2 24 20-43 16-39 (195)
491 2wjg_A FEOB, ferrous iron tran 93.5 0.054 1.8E-06 45.7 3.8 24 19-42 7-30 (188)
492 2v9p_A Replication protein E1; 93.5 0.042 1.4E-06 50.5 3.2 24 20-43 127-150 (305)
493 2yz2_A Putative ABC transporte 93.4 0.038 1.3E-06 49.9 2.9 33 20-56 34-66 (266)
494 2ihy_A ABC transporter, ATP-bi 93.4 0.038 1.3E-06 50.3 2.9 33 20-56 48-80 (279)
495 1q3t_A Cytidylate kinase; nucl 93.4 0.043 1.5E-06 48.6 3.2 26 18-43 15-40 (236)
496 3tqf_A HPR(Ser) kinase; transf 93.4 0.046 1.6E-06 45.2 3.0 23 20-42 17-39 (181)
497 2nq2_C Hypothetical ABC transp 93.4 0.038 1.3E-06 49.5 2.8 24 20-43 32-55 (253)
498 1svm_A Large T antigen; AAA+ f 93.4 0.041 1.4E-06 52.3 3.1 26 18-43 168-193 (377)
499 3zq6_A Putative arsenical pump 93.3 0.074 2.5E-06 49.6 4.9 25 19-43 14-38 (324)
500 3ug7_A Arsenical pump-driving 93.3 0.15 5E-06 48.1 6.9 26 18-43 25-50 (349)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.5e-40 Score=339.52 Aligned_cols=271 Identities=16% Similarity=0.145 Sum_probs=206.4
Q ss_pred CCChhHHHHHHHHHhcC---CeEEEEEEcCCCCcHHHHHHHHHh--hcccCCCCCCEEEEEEeCCCc--CccchhH----
Q 038724 1 IENPKQFYQVWRFLVKK---DVGIIGLFGTGGVGKTTILKQINN--RFCSERPGFDVVIWVVVSKEL--KLETSQD---- 69 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~---~~~~v~i~G~~GiGKTtLa~~~~~--~~~~~~~~f~~~~~v~~~~~~--~~~~~~~---- 69 (483)
+||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +. .++.+|++++||++++.. +...++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999754 679999999999999999999997 34 568899999999998864 2222222
Q ss_pred ------------------------Hh--hhcCC-cEEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhhh-----
Q 038724 70 ------------------------DM--ILSTK-KFLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEVC----- 117 (483)
Q Consensus 70 ------------------------~i--~l~~~-~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~----- 117 (483)
.+ .++++ |+||||||||+.+++ .+. ..+||+||||||++.++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCS
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCC
Confidence 22 56776 999999999998754 211 12689999999998776
Q ss_pred ------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhcCCCCHHHHHHHHHHHHhccc
Q 038724 118 ------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMAYKKTPEEWKDAIEILMRSAL 191 (483)
Q Consensus 118 ------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~~w~~~~~~l~~~~~ 191 (483)
+++|++++|++||.+.++... ..+...+.+++|+++|+|+|||++++|+.++.+ . |... +.+.....
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~ 356 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLE 356 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhh
Confidence 889999999999999986543 235667789999999999999999999999763 2 4433 33333221
Q ss_pred CCCChHHHHHhhhcccCCCCchhhhHHHh-----------hhcCCCCCCccccccceehhhhhc--CCccCCccchHHHH
Q 038724 192 QFPGINKVYYRLKFSFDRLPSDQIRSCFL-----------FCSPFPGDYRIHKRDLVVNYWIDE--GIILDDEFDRNKAI 258 (483)
Q Consensus 192 ~~~~~~~~~~~l~~s~~~L~~~~~~~~~~-----------~~a~fp~~~~i~~~~l~i~~w~~e--g~~~~~~~~~~~~~ 258 (483)
... ...+..++.+||+.||+ +++.||. |||+||+++.++ +..|+++ ||+.... .....+
T Consensus 357 ~~~-~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~-----i~~w~a~~~G~i~~~~-~~~~~~ 428 (549)
T 2a5y_B 357 SRG-LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP-----VKLWSCVIPVDICSNE-EEQLDD 428 (549)
T ss_dssp HHC-SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE-----HHHHHHHSCC--------CCCTH
T ss_pred ccc-HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee-----eeeeeeeccceeccCC-CCCCHH
Confidence 111 22678889999999999 8999999 999999999886 6899999 8887543 112234
Q ss_pred HHHHHHhhHHHHhhhhhhhh---hhhhhhcccCcccccc
Q 038724 259 NRRYSINGDLIRASLLEEEE---DILEKLRDVVPSDALK 294 (483)
Q Consensus 259 ~~~~~~l~~L~~~sll~~~~---~~~~~l~~~~~~~~~~ 294 (483)
+.+. ++++|+++++++... ...|+||+++++++..
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~ 466 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKH 466 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHT
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHH
Confidence 4455 999999999998742 3469999999998874
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4e-35 Score=304.16 Aligned_cols=246 Identities=17% Similarity=0.223 Sum_probs=198.5
Q ss_pred CCChhHHHHHHHHHhc-CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCE-EEEEEeCCCcCccchhHHh-------
Q 038724 1 IENPKQFYQVWRFLVK-KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDV-VIWVVVSKELKLETSQDDM------- 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~-~~~v~~~~~~~~~~~~~~i------- 71 (483)
|||++++++|.++|.. ++.++|+|+||||+||||||+++|++. +++.+|+. ++|+++++.++...+...+
T Consensus 131 VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 7999999999999986 567899999999999999999999865 44667886 9999999876643322211
Q ss_pred ------------------------------hhcCCcEEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhhh----
Q 038724 72 ------------------------------ILSTKKFLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEVC---- 117 (483)
Q Consensus 72 ------------------------------~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~---- 117 (483)
...++|+||||||||+.++|+.+. +||+||||||++.++
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcC
Confidence 125799999999999988887642 589999999999875
Q ss_pred ------hc------cCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhcCC-CCHHHHHHHHH
Q 038724 118 ------VD------CFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMAYK-KTPEEWKDAIE 184 (483)
Q Consensus 118 ------l~------~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~-~~~~~w~~~~~ 184 (483)
++ +|+++||++||....+.. ..+..++ .|+|+|||++++|+.|+.+ ...+.|...
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV-- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--
Confidence 55 899999999999885322 2233444 3999999999999999875 266778652
Q ss_pred HHHhcccCCCChHHHHHhhhcccCCCCchhh-hHHHhhhcCCCCCCccccccceehhhhhcCCccCCccchHHHHHHHHH
Q 038724 185 ILMRSALQFPGINKVYYRLKFSFDRLPSDQI-RSCFLFCSPFPGDYRIHKRDLVVNYWIDEGIILDDEFDRNKAINRRYS 263 (483)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~l~~s~~~L~~~~~-~~~~~~~a~fp~~~~i~~~~l~i~~w~~eg~~~~~~~~~~~~~~~~~~ 263 (483)
....+..++..||+.||+ +. |.||++||+||+++.|+.+.+ +..|.++|. +.+..
T Consensus 351 ----------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elL-a~LW~aeGe------------edAe~ 406 (1221)
T 1vt4_I 351 ----------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILL-SLIWFDVIK------------SDVMV 406 (1221)
T ss_dssp ----------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHH-HHHHCSSCS------------HHHHH
T ss_pred ----------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHH-HHHhcCCCH------------HHHHH
Confidence 124899999999999999 78 999999999999999998888 999988761 23667
Q ss_pred HhhHHHHhhhhhhh-hhhhhhhcccCcc
Q 038724 264 INGDLIRASLLEEE-EDILEKLRDVVPS 290 (483)
Q Consensus 264 ~l~~L~~~sll~~~-~~~~~~l~~~~~~ 290 (483)
++++|++++++... ....|+||+++.+
T Consensus 407 ~L~eLvdRSLLq~d~~~~rYrMHDLllE 434 (1221)
T 1vt4_I 407 VVNKLHKYSLVEKQPKESTISIPSIYLE 434 (1221)
T ss_dssp HHHHHHTSSSSSBCSSSSEEBCCCHHHH
T ss_pred HHHHHHhhCCEEEeCCCCEEEehHHHHH
Confidence 89999999999874 3456888888654
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7.2e-34 Score=319.40 Aligned_cols=265 Identities=18% Similarity=0.279 Sum_probs=210.9
Q ss_pred CCChhHHHHHHHHHh--cCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCC-CCCEEEEEEeCCCcC------ccchhHHh
Q 038724 1 IENPKQFYQVWRFLV--KKDVGIIGLFGTGGVGKTTILKQINNRFCSERP-GFDVVIWVVVSKELK------LETSQDDM 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~--~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~f~~~~~v~~~~~~~------~~~~~~~i 71 (483)
|||++++++|.+.|. +++.++|+|+||||+||||||+++|++...... ++++++|+++++..+ +..+...+
T Consensus 127 vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l 206 (1249)
T 3sfz_A 127 VTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRL 206 (1249)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHh
Confidence 799999999999995 357899999999999999999999987522234 557788999987432 11111111
Q ss_pred -----------------------hhc--CCcEEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhhh---------
Q 038724 72 -----------------------ILS--TKKFLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEVC--------- 117 (483)
Q Consensus 72 -----------------------~l~--~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~--------- 117 (483)
.+. ++|+||||||||+..++..+ .+||+||||||++.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~ 279 (1249)
T 3sfz_A 207 DQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHV 279 (1249)
T ss_dssp TTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCC
T ss_pred hhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceE
Confidence 233 44999999999998776653 4689999999999775
Q ss_pred --hcc-CChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccCC-
Q 038724 118 --VDC-FTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMAYKKTPEEWKDAIEILMRSALQF- 193 (483)
Q Consensus 118 --l~~-L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~- 193 (483)
+++ |++++|+++|...++... +...+.+++|+++|+|+||||+++|++|+.+. ..|..+++.+.......
T Consensus 280 ~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~ 353 (1249)
T 3sfz_A 280 VPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRI 353 (1249)
T ss_dssp EECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCS
T ss_pred EEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhc
Confidence 554 999999999998885432 45567899999999999999999999998743 57998888886654221
Q ss_pred -----CChHHHHHhhhcccCCCCchhhhHHHhhhcCCCCCCccccccceehhhhhcCCccCCccchHHHHHHHHHHhhHH
Q 038724 194 -----PGINKVYYRLKFSFDRLPSDQIRSCFLFCSPFPGDYRIHKRDLVVNYWIDEGIILDDEFDRNKAINRRYSINGDL 268 (483)
Q Consensus 194 -----~~~~~~~~~l~~s~~~L~~~~~~~~~~~~a~fp~~~~i~~~~l~i~~w~~eg~~~~~~~~~~~~~~~~~~~l~~L 268 (483)
...+.+..++.+||+.|++ +.|.||.+||+||+++.|+...+ +..|.++ .+.+..++++|
T Consensus 354 ~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~-~~~~~~~-------------~~~~~~~l~~L 418 (1249)
T 3sfz_A 354 RKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVL-CVLWDLE-------------TEEVEDILQEF 418 (1249)
T ss_dssp SCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHH-HHHHTCC-------------HHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHH-HHHhCCC-------------HHHHHHHHHHH
Confidence 1234799999999999999 89999999999999999999999 9999653 24567789999
Q ss_pred HHhhhhhhhhhh---hhhhcccCccccc
Q 038724 269 IRASLLEEEEDI---LEKLRDVVPSDAL 293 (483)
Q Consensus 269 ~~~sll~~~~~~---~~~l~~~~~~~~~ 293 (483)
++++++...... .|+||+++++++.
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~ 446 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLT 446 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHH
T ss_pred HhccceEEecCCCceEEEecHHHHHHHH
Confidence 999999875333 4899998887765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=9.5e-32 Score=278.47 Aligned_cols=265 Identities=20% Similarity=0.322 Sum_probs=204.3
Q ss_pred CCChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhcccC-CCCC-CEEEEEEeCCCcCc---cch------
Q 038724 1 IENPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRFCSE-RPGF-DVVIWVVVSKELKL---ETS------ 67 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~~f-~~~~~v~~~~~~~~---~~~------ 67 (483)
|||++++++|.+++.. ++.++|+|+||||+||||||.+++++. .. ..+| ++++|++++..... ..+
T Consensus 127 vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~ 205 (591)
T 1z6t_A 127 VTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTR 205 (591)
T ss_dssp CCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCchHHHHHHHHHHHHH
Confidence 7999999999999984 467899999999999999999999875 22 4567 57999998764210 011
Q ss_pred ------------------hHHh--hhc--CCcEEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhhh--------
Q 038724 68 ------------------QDDM--ILS--TKKFLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEVC-------- 117 (483)
Q Consensus 68 ------------------~~~i--~l~--~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~~-------- 117 (483)
...+ .+. .+++||||||+|+...+..+ ..+++||||||+..++
T Consensus 206 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~~~~~ 278 (591)
T 1z6t_A 206 LDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMGPKY 278 (591)
T ss_dssp HCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCCSCEE
T ss_pred hccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcCCCce
Confidence 0011 122 37899999999987665432 4579999999999765
Q ss_pred ----hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccC-
Q 038724 118 ----VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAMAYKKTPEEWKDAIEILMRSALQ- 192 (483)
Q Consensus 118 ----l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~~w~~~~~~l~~~~~~- 192 (483)
+++|+.++++++|...++... ....+.+++|+++|+|+|+|++++|+.++.. ...|..+++.+......
T Consensus 279 ~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 279 VVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSCCCCC
T ss_pred EeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHhHHHH
Confidence 358999999999999886532 2335678999999999999999999999863 34688888887654321
Q ss_pred -----CCChHHHHHhhhcccCCCCchhhhHHHhhhcCCCCCCccccccceehhhhhcCCccCCccchHHHHHHHHHHhhH
Q 038724 193 -----FPGINKVYYRLKFSFDRLPSDQIRSCFLFCSPFPGDYRIHKRDLVVNYWIDEGIILDDEFDRNKAINRRYSINGD 267 (483)
Q Consensus 193 -----~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~a~fp~~~~i~~~~l~i~~w~~eg~~~~~~~~~~~~~~~~~~~l~~ 267 (483)
......+..++..||+.||+ +.|.||.++|+||+++.++...+ ...|..+ ...+..++++
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l-~~l~~~~-------------~~~~~~~l~~ 417 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVL-CILWDME-------------TEEVEDILQE 417 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHH-HHHHTCC-------------HHHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHH-HHHhccC-------------HHHHHHHHHH
Confidence 11224789999999999999 89999999999999999988877 7778542 1235678999
Q ss_pred HHHhhhhhhhh---hhhhhhcccCcccccc
Q 038724 268 LIRASLLEEEE---DILEKLRDVVPSDALK 294 (483)
Q Consensus 268 L~~~sll~~~~---~~~~~l~~~~~~~~~~ 294 (483)
|++++++.... ...|++|+.++++...
T Consensus 418 L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~ 447 (591)
T 1z6t_A 418 FVNKSLLFCDRNGKSFRYYLHDLQVDFLTE 447 (591)
T ss_dssp HHHTTSSEEEEETTEEEEECCHHHHHHHHH
T ss_pred HHhCcCeEEecCCCccEEEEcHHHHHHHHh
Confidence 99999997532 3468899988877653
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=1.4e-17 Score=158.90 Aligned_cols=167 Identities=22% Similarity=0.245 Sum_probs=120.1
Q ss_pred CccccccccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCccccc--
Q 038724 288 VPSDALKWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISK-- 364 (483)
Q Consensus 288 ~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~-- 364 (483)
++..+..+++|++|++++|.++.++.. ..+++|++|++++|.+..+|.. +..+++|++|++++|+..+.+|..++.
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 444455688999999999999877653 6789999999999999877655 888999999999998888888887765
Q ss_pred -------CcCCCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCCCC-CCCCc-----------cchhhHhhhccccc
Q 038724 365 -------LVSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVMEEG-NCQSD-----------DAESLLKEMLCLEQ 425 (483)
Q Consensus 365 -------l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~-~~~l~-----------~~~~~~~~l~~l~~ 425 (483)
+++|++|++++|.+..+|..++.+++|++|++++|.+..+|. +..+. .....+..+..+++
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 899999999999988999889999999999999998776532 22111 12223334445555
Q ss_pred cccceeeccCc-----cccCCCCCcccccceeeee
Q 038724 426 LNIIRLTSCSL-----CSLCGLPTVQCLTSRRLNL 455 (483)
Q Consensus 426 L~~L~l~~~~l-----~~l~~l~~l~~l~l~~~~~ 455 (483)
|+.|++++|++ ..+..+++|+.|++++|++
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 55555555443 1234445555555554433
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=6.8e-17 Score=153.10 Aligned_cols=114 Identities=17% Similarity=0.259 Sum_probs=52.8
Q ss_pred ccccccccceEEEEccc-cccccccC--CCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccC
Q 038724 289 PSDALKWLGLRRMSLMN-NQIKTLLN--TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKL 365 (483)
Q Consensus 289 ~~~~~~~~~l~~l~l~~-~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 365 (483)
+..+..+++|+.|++++ |.+.+..+ ...+++|++|++++|.+....+..+..+++|++|++++|.+.+.+|..+..+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 33444444555555552 44442222 1344455555555554443333334445555555555554444444445555
Q ss_pred cCCCEEeccCCCCC-ccCccccCCc-CCCEEecCCCCCc
Q 038724 366 VSLQHLDISFTSTL-ELPEELKALE-KLKYLDMDDHQQV 402 (483)
Q Consensus 366 ~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~n~~~ 402 (483)
++|++|++++|.+. .+|..+..++ +|+.|++++|.+.
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 55555555555443 4444444444 4455555554444
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=1.3e-16 Score=149.27 Aligned_cols=174 Identities=19% Similarity=0.139 Sum_probs=106.3
Q ss_pred hhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCc-cccccchhhhcCCCccEEEccCCccCccCC
Q 038724 283 KLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNY-LQDIKNGFFQFMPCLKVLNLSYNRFLTKLP 359 (483)
Q Consensus 283 ~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 359 (483)
.+.++.+..+..+++++.|++++|.++.+.+. ..+++|++|++++|. +..+++..+..+++|++|++++|.+.+..|
T Consensus 43 ~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 122 (285)
T 1ozn_A 43 RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH
Confidence 34444444555666777777777777666432 456677777777775 666656556677777777777776555556
Q ss_pred cccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCC--CCCCc-----------cchhhHhhhccccc
Q 038724 360 SGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEG--NCQSD-----------DAESLLKEMLCLEQ 425 (483)
Q Consensus 360 ~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~--~~~l~-----------~~~~~~~~l~~l~~ 425 (483)
..+..+++|++|++++|.+..+|.. +..+++|+.|++++|.+...|. +..+. .....+..+..+++
T Consensus 123 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence 6666777777777777776666654 6667777777777776554422 22111 11222445666667
Q ss_pred cccceeeccCccc-----cCCCCCcccccceeeeee
Q 038724 426 LNIIRLTSCSLCS-----LCGLPTVQCLTSRRLNLE 456 (483)
Q Consensus 426 L~~L~l~~~~l~~-----l~~l~~l~~l~l~~~~~~ 456 (483)
|+.|++++|.+.. +..+++|+.|++++|.+.
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 7777777766533 345566666666555543
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=3e-16 Score=145.46 Aligned_cols=163 Identities=23% Similarity=0.281 Sum_probs=122.2
Q ss_pred hhhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCC
Q 038724 282 EKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLP 359 (483)
Q Consensus 282 ~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 359 (483)
..+..+.+..+..+++|+.|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++++|.+....|
T Consensus 47 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 126 (270)
T 2o6q_A 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP 126 (270)
T ss_dssp SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH
Confidence 334445555566778888888888888877764 457888888888888888887777888888888888887666666
Q ss_pred cccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc
Q 038724 360 SGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS 438 (483)
Q Consensus 360 ~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 438 (483)
..+..+++|++|++++|.+..+|.. +..+++|+.|++++|.+..+| +..+..+++|+.|++++|++..
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-----------EGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-----------TTTTTTCTTCCEEECCSSCCSC
T ss_pred HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-----------hhHhccCCCcCEEECCCCcCCc
Confidence 6678888888888888888888776 678888888888888866442 2346778899999999998754
Q ss_pred c-----CCCCCcccccceeeee
Q 038724 439 L-----CGLPTVQCLTSRRLNL 455 (483)
Q Consensus 439 l-----~~l~~l~~l~l~~~~~ 455 (483)
+ ..+++|+.|++++|.+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCHHHhccccCCCEEEecCCCe
Confidence 3 4456666666655544
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=3.7e-16 Score=144.85 Aligned_cols=157 Identities=22% Similarity=0.266 Sum_probs=131.3
Q ss_pred cceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 296 LGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
.+++.|++++|.++.+++. ..+++|++|++++|.++.+++..|..+++|++|++++|++....+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 5688999999999988763 67899999999999999999888899999999999999865555566789999999999
Q ss_pred cCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCCCCCccc
Q 038724 374 SFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLPTVQC 447 (483)
Q Consensus 374 ~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~~l~~ 447 (483)
++|.+..+|.. +..+++|++|++++|.+...|. ..+..+++|+.|++++|.+.. +..+++|+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-----------GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-----------hHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 99999888765 7899999999999998765432 236789999999999998754 566789999
Q ss_pred ccceeeeeeeeecccc
Q 038724 448 LTSRRLNLEVEDWHKC 463 (483)
Q Consensus 448 l~l~~~~~~~~~~~~~ 463 (483)
|++++|.+...+...+
T Consensus 186 L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAF 201 (270)
T ss_dssp EECCSSCCSCCCTTTT
T ss_pred EECCCCcCCcCCHHHh
Confidence 9999888876554433
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=2.9e-16 Score=143.90 Aligned_cols=150 Identities=23% Similarity=0.241 Sum_probs=101.2
Q ss_pred cceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 296 LGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
..++.|++++|.++.+++. ..+++|++|++++|.++.+++..|..+++|++|++++|.+....|..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 4567777777777776653 45677777777777777777766777777777777777655544556677777777777
Q ss_pred cCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCCCCCccc
Q 038724 374 SFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLPTVQC 447 (483)
Q Consensus 374 ~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~~l~~ 447 (483)
++|.+..+|.. +..+++|+.|++++|.+..+|. ..+..+++|+.|++++|.+.. +..+++|+.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-----------GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCH-----------HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 77777777765 4677777777777777654421 235666777777777776643 344556666
Q ss_pred ccceeeeee
Q 038724 448 LTSRRLNLE 456 (483)
Q Consensus 448 l~l~~~~~~ 456 (483)
|++++|.+.
T Consensus 184 L~l~~N~~~ 192 (251)
T 3m19_A 184 ITLFGNQFD 192 (251)
T ss_dssp EECCSCCBC
T ss_pred EEeeCCcee
Confidence 666555443
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=2.2e-16 Score=157.70 Aligned_cols=172 Identities=21% Similarity=0.173 Sum_probs=77.7
Q ss_pred ccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccc
Q 038724 286 DVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGIS 363 (483)
Q Consensus 286 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 363 (483)
.+.+..+..+++|+.|++++|.++.+++. ..+++|++|+|++|.++.+++..|..+++|++|++++|++....+..+.
T Consensus 89 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 168 (452)
T 3zyi_A 89 MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT
T ss_pred eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHh
Confidence 33334444455555555555555544332 3345555555555555555544445555555555555543322223344
Q ss_pred cCcCCCEEeccCCC-CCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCc-----------cchhhHhhhccccccccce
Q 038724 364 KLVSLQHLDISFTS-TLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSD-----------DAESLLKEMLCLEQLNIIR 430 (483)
Q Consensus 364 ~l~~L~~L~l~~~~-i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~-----------~~~~~~~~l~~l~~L~~L~ 430 (483)
.+++|++|++++|. +..+|.. +..+++|++|++++|.+...|.+..+. .....+..+..+++|+.|+
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 44444444444422 4444432 444444444444444444333321111 1112234455555555555
Q ss_pred eeccCccc-----cCCCCCcccccceeeeeee
Q 038724 431 LTSCSLCS-----LCGLPTVQCLTSRRLNLEV 457 (483)
Q Consensus 431 l~~~~l~~-----l~~l~~l~~l~l~~~~~~~ 457 (483)
+++|.+.. +..+++|+.|++++|++..
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 55555422 3444555555555554443
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=157.38 Aligned_cols=154 Identities=22% Similarity=0.259 Sum_probs=91.3
Q ss_pred hhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCc
Q 038724 283 KLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPS 360 (483)
Q Consensus 283 ~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 360 (483)
.+..+.+..+..+++|+.|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++++|+.+..+|.
T Consensus 99 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 99 HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 34444444555566666666666666666542 4566677777777766666666666667777777766544554443
Q ss_pred -ccccCcCCCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCC-CC-CCCCc-----------cchhhHhhhcccccc
Q 038724 361 -GISKLVSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVME-EG-NCQSD-----------DAESLLKEMLCLEQL 426 (483)
Q Consensus 361 -~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~-p~-~~~l~-----------~~~~~~~~l~~l~~L 426 (483)
.+..+++|++|++++|.+..+|. +..+++|+.|+|++|.+... |. +..+. .....+..+..+++|
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred chhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 46667777777777777777763 66677777777777766655 33 22221 111223344555555
Q ss_pred ccceeeccCcc
Q 038724 427 NIIRLTSCSLC 437 (483)
Q Consensus 427 ~~L~l~~~~l~ 437 (483)
+.|++++|.+.
T Consensus 258 ~~L~L~~N~l~ 268 (440)
T 3zyj_A 258 VEINLAHNNLT 268 (440)
T ss_dssp CEEECTTSCCC
T ss_pred CEEECCCCCCC
Confidence 55555555553
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=3.2e-16 Score=145.39 Aligned_cols=153 Identities=24% Similarity=0.241 Sum_probs=105.2
Q ss_pred cccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
+..+++++.|++++|.++.++....+++|++|++++|.++.+++..+..+++|++|++++|++.+..|..++.+++|++|
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 34567778888888877776656677788888888888777777767777888888888887555555556777888888
Q ss_pred eccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCCCCCc
Q 038724 372 DISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLPTV 445 (483)
Q Consensus 372 ~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~~l 445 (483)
++++|.+..+|.. +..+++|+.|++++|.+...|. ..+..+++|+.|++++|.+.. +..+++|
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-----------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-----------HHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 8888887777765 5677788888888887654421 224556666666666666533 3445556
Q ss_pred ccccceeeee
Q 038724 446 QCLTSRRLNL 455 (483)
Q Consensus 446 ~~l~l~~~~~ 455 (483)
+.|++++|.+
T Consensus 208 ~~L~l~~N~~ 217 (272)
T 3rfs_A 208 QYIWLHDNPW 217 (272)
T ss_dssp CEEECCSSCB
T ss_pred CEEEccCCCc
Confidence 6665555543
No 14
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.4e-16 Score=140.27 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=125.1
Q ss_pred ccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 293 LKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 293 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
..+++++.|++++|.++.++....+++|++|++++|.+..++ .+..+++|++|++++|.+....|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 456789999999999998887778999999999999877665 388899999999999987777888999999999999
Q ss_pred ccCCCCCc-cCccccCCcCCCEEecCCCC-CcCCCCCCCCccchhhHhhhccccccccceeeccCccc---cCCCCCccc
Q 038724 373 ISFTSTLE-LPEELKALEKLKYLDMDDHQ-QVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS---LCGLPTVQC 447 (483)
Q Consensus 373 l~~~~i~~-lp~~~~~l~~L~~L~l~~n~-~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~l~~l~~ 447 (483)
+++|.+.. .|..+..+++|++|++++|. +... ..+..+++|+.|++++|.+.. +..+++|+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-------------~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~ 185 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-------------MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQ 185 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-------------GGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCE
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-------------HhhcCCCCCCEEECCCCCCcChHHhccCCCCCE
Confidence 99999875 56679999999999999997 4322 257889999999999998754 466788888
Q ss_pred ccceeeeee
Q 038724 448 LTSRRLNLE 456 (483)
Q Consensus 448 l~l~~~~~~ 456 (483)
|++++|+++
T Consensus 186 L~l~~N~i~ 194 (197)
T 4ezg_A 186 LYAFSQTIG 194 (197)
T ss_dssp EEECBC---
T ss_pred EEeeCcccC
Confidence 888887765
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=6.8e-16 Score=141.39 Aligned_cols=168 Identities=19% Similarity=0.177 Sum_probs=137.9
Q ss_pred ceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCC
Q 038724 297 GLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFT 376 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 376 (483)
..+.++++++.++.+|... .++++.|++++|.+..+++..|..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4567999999999888643 379999999999999999888999999999999999877777777999999999999999
Q ss_pred CCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCCCCCcccccc
Q 038724 377 STLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLPTVQCLTS 450 (483)
Q Consensus 377 ~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~~l~~l~l 450 (483)
.+..+|.. +..+++|++|++++|.+..+|. ..+..+++|+.|++++|.+.. +..+++|+.|++
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-----------GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcCh-----------hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 99999865 7899999999999999775532 236789999999999998744 566789999999
Q ss_pred eeeeeeeeecccccCccc-eeecCCcc
Q 038724 451 RRLNLEVEDWHKCTGEVH-KVLQSGGS 476 (483)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~-~~~~~~~~ 476 (483)
++|.+...+...+..... ..+++.++
T Consensus 163 ~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 163 STNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 999888666544444333 44555443
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=6e-16 Score=144.79 Aligned_cols=145 Identities=25% Similarity=0.266 Sum_probs=113.1
Q ss_pred hhcccCccccccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCccc
Q 038724 283 KLRDVVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGI 362 (483)
Q Consensus 283 ~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 362 (483)
.+....+..+..+++|+.|++++|.++.++....+++|++|++++|.+..++.. +..+++|++|++++|++....|..+
T Consensus 42 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~ 120 (290)
T 1p9a_G 42 LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGAL 120 (290)
T ss_dssp CCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTT
T ss_pred cCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHH
Confidence 344444555667788888999999888887777888899999999988877664 6788889999999987655555678
Q ss_pred ccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc
Q 038724 363 SKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL 439 (483)
Q Consensus 363 ~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 439 (483)
..+++|++|++++|.+..+|.. +..+++|+.|++++|++..+|. ..+..+++|+.|++++|++..+
T Consensus 121 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-----------~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-----------GLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-----------TTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH-----------HHhcCcCCCCEEECCCCcCCcc
Confidence 8888999999999888888776 5788889999999988765532 2356788888888888887654
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=2.5e-16 Score=150.19 Aligned_cols=160 Identities=20% Similarity=0.228 Sum_probs=128.9
Q ss_pred ccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 295 WLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
...++.|++++|.++.+++. ..+++|++|++++|.+..+|.. +..+++|++|++++|.+ ..+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPL-RALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEEC
Confidence 35688999999999988764 5689999999999999977655 78999999999999975 488999999999999999
Q ss_pred cCCC-CCccCccccC---------CcCCCEEecCCCCCcCCCC-CCCCc----------cchhhHhhhccccccccceee
Q 038724 374 SFTS-TLELPEELKA---------LEKLKYLDMDDHQQVMEEG-NCQSD----------DAESLLKEMLCLEQLNIIRLT 432 (483)
Q Consensus 374 ~~~~-i~~lp~~~~~---------l~~L~~L~l~~n~~~~~p~-~~~l~----------~~~~~~~~l~~l~~L~~L~l~ 432 (483)
++|. ++.+|..+.. +++|++|++++|.+..+|. ++.++ .....+..+..+++|+.|+++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 9976 8889987764 9999999999999886665 43332 122345567778888888888
Q ss_pred ccCc-----cccCCCCCcccccceeeeee
Q 038724 433 SCSL-----CSLCGLPTVQCLTSRRLNLE 456 (483)
Q Consensus 433 ~~~l-----~~l~~l~~l~~l~l~~~~~~ 456 (483)
+|.+ ..+..+++|+.|++++|++.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 8765 23566778888888776554
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=5.6e-16 Score=138.79 Aligned_cols=135 Identities=20% Similarity=0.193 Sum_probs=73.6
Q ss_pred cceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 296 LGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
..++.|++++|.++.+++. ..+++|++|+|++|.+..+.+..|..+++|++|+|++|.+....+..+..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 3455666666666555542 34556666666666666555555566666666666666433222223455666666666
Q ss_pred cCCCCCccCc-cccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccccCC
Q 038724 374 SFTSTLELPE-ELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSLCG 441 (483)
Q Consensus 374 ~~~~i~~lp~-~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~ 441 (483)
++|.+..+++ .+..+++|++|+|++|.+..+| +..+..+++|+.|++++|++.+-+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-----------KGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-----------TTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-----------HHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 6666555533 3555666666666666544331 1224455566666666666554443
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=8.5e-16 Score=142.52 Aligned_cols=155 Identities=21% Similarity=0.198 Sum_probs=133.0
Q ss_pred ccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 293 LKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 293 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
..+.+++.+++.+|.++.++....+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..++.+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 357789999999999998887788999999999999998875 388999999999999986666666689999999999
Q ss_pred ccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCCCCCcc
Q 038724 373 ISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLPTVQ 446 (483)
Q Consensus 373 l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~~l~ 446 (483)
+++|.+..+|.. +..+++|++|++++|.+...|. ..+..+++|+.|++++|.+.. +..+++|+
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK-----------GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCH-----------HHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 999999998876 7899999999999998765422 346789999999999998754 46788999
Q ss_pred cccceeeeeeeeec
Q 038724 447 CLTSRRLNLEVEDW 460 (483)
Q Consensus 447 ~l~l~~~~~~~~~~ 460 (483)
.|++++|++....-
T Consensus 185 ~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 185 DLRLYQNQLKSVPD 198 (272)
T ss_dssp EEECCSSCCSCCCT
T ss_pred EEECCCCcCCccCH
Confidence 99999998876543
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=1.4e-15 Score=142.21 Aligned_cols=166 Identities=21% Similarity=0.203 Sum_probs=127.3
Q ss_pred ccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCc-cCccCCcccccCcCCCEE
Q 038724 295 WLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNR-FLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L 371 (483)
.++++.|++++|.++.+++. ..+++|++|++++|.+..+.+..|..+++|++|++++|. +....|..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 45789999999999988763 678999999999999999988789999999999999997 444447889999999999
Q ss_pred eccCCCCCccCc-cccCCcCCCEEecCCCCCcCCC-C-CCCCc-----------cchhhHhhhccccccccceeeccCcc
Q 038724 372 DISFTSTLELPE-ELKALEKLKYLDMDDHQQVMEE-G-NCQSD-----------DAESLLKEMLCLEQLNIIRLTSCSLC 437 (483)
Q Consensus 372 ~l~~~~i~~lp~-~~~~l~~L~~L~l~~n~~~~~p-~-~~~l~-----------~~~~~~~~l~~l~~L~~L~l~~~~l~ 437 (483)
++++|.+..+++ .+..+++|++|++++|.+...| . +..+. .....+..+..+++|+.|++++|.+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 999999888854 5889999999999999988773 2 33321 11111223566677777777777653
Q ss_pred -----ccCCCCCcccccceeeeeeeeec
Q 038724 438 -----SLCGLPTVQCLTSRRLNLEVEDW 460 (483)
Q Consensus 438 -----~l~~l~~l~~l~l~~~~~~~~~~ 460 (483)
.+..+++|+.|++++|++...+.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 34556677777777766665443
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=1.1e-15 Score=137.72 Aligned_cols=134 Identities=25% Similarity=0.281 Sum_probs=110.0
Q ss_pred cceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 296 LGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
++++.|++++|.++.+.+. ..+++|++|+|++|.++.+++..|..+++|++|+|++|.+....+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 6788899999999888653 57889999999999998888887888999999999999755555555788999999999
Q ss_pred cCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccccC
Q 038724 374 SFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSLC 440 (483)
Q Consensus 374 ~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~ 440 (483)
++|.+..+|..+..+++|++|++++|.+..+|. ..+..+++|+.|++++|++.+-+
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-----------GAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-----------TTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCH-----------HHHhCCCCCCEEEeeCCCccCCc
Confidence 999998999888899999999999998765422 34677888999999999886543
No 22
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=6.4e-16 Score=143.75 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=95.4
Q ss_pred hcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcc
Q 038724 284 LRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSG 361 (483)
Q Consensus 284 l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 361 (483)
+.+..+..+..+++++.|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++++|.+....+..
T Consensus 40 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 119 (276)
T 2z62_A 40 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119 (276)
T ss_dssp CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCC
T ss_pred ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchh
Confidence 3333333444555666666666666655542 44566666666666666665555666666666666666544433335
Q ss_pred cccCcCCCEEeccCCCCCc--cCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccc----cceeeccC
Q 038724 362 ISKLVSLQHLDISFTSTLE--LPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLN----IIRLTSCS 435 (483)
Q Consensus 362 ~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~----~L~l~~~~ 435 (483)
++.+++|++|++++|.+.. +|..+..+++|++|++++|.+... .+..+..+++|+ .|++++|.
T Consensus 120 ~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----------YCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-----------CGGGGHHHHTCTTCCEEEECCSSC
T ss_pred cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-----------CHHHhhhhhhccccceeeecCCCc
Confidence 6666666666666666554 455566666666666666664432 112333344444 67777777
Q ss_pred cccc----CCCCCcccccceeeeeeeeecc
Q 038724 436 LCSL----CGLPTVQCLTSRRLNLEVEDWH 461 (483)
Q Consensus 436 l~~l----~~l~~l~~l~l~~~~~~~~~~~ 461 (483)
+..+ ....+|+.|++++|.+...+..
T Consensus 189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp CCEECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred ccccCccccCCCcccEEECCCCceeecCHh
Confidence 6443 2233677777777777655443
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=1e-15 Score=142.33 Aligned_cols=163 Identities=21% Similarity=0.212 Sum_probs=91.8
Q ss_pred hhhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCc-cC
Q 038724 282 EKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLT-KL 358 (483)
Q Consensus 282 ~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~ 358 (483)
+.+..+.+..+..+++|+.|++++|.++.+++. ..+++|++|++++|.+..+++..+..+++|++|++++|.+.. .+
T Consensus 62 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l 141 (276)
T 2z62_A 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred CcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecC
Confidence 334444444455566666666666666665532 456666666666666666655446666666666666665433 24
Q ss_pred CcccccCcCCCEEeccCCCCCccCc-cccCCcCCC----EEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeec
Q 038724 359 PSGISKLVSLQHLDISFTSTLELPE-ELKALEKLK----YLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTS 433 (483)
Q Consensus 359 p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~----~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~ 433 (483)
|..+..+++|++|++++|.+..+|. .+..+++|+ .|++++|.+..+|. ......+|+.|++++
T Consensus 142 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~------------~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP------------GAFKEIRLKELALDT 209 (276)
T ss_dssp CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT------------TSSCSCCEEEEECCS
T ss_pred chhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc------------cccCCCcccEEECCC
Confidence 6666666666666666666666553 244444444 66666666543311 111223566666666
Q ss_pred cCccc-----cCCCCCcccccceeeeee
Q 038724 434 CSLCS-----LCGLPTVQCLTSRRLNLE 456 (483)
Q Consensus 434 ~~l~~-----l~~l~~l~~l~l~~~~~~ 456 (483)
|.+.. +..+++|+.|++++|.+.
T Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 210 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CceeecCHhHhcccccccEEEccCCccc
Confidence 66533 234555555555554443
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.63 E-value=7e-16 Score=146.11 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=127.8
Q ss_pred hhhcccCccccccccceEEEEccccccccccC--CCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCC
Q 038724 282 EKLRDVVPSDALKWLGLRRMSLMNNQIKTLLN--TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLP 359 (483)
Q Consensus 282 ~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 359 (483)
..+.+.++..+..+++|++|++++|.+++..+ ...+++|++|++++|.+....+..+..+++|++|++++|.+.+.+|
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 44555667777788889999999998874433 2578889999999998886666668888899999999988777888
Q ss_pred cccccCc-CCCEEeccCCCCC-ccCccccCCcCCCEEecCCCCCcCC-CC-CCCCc----------cchhhHhhhccccc
Q 038724 360 SGISKLV-SLQHLDISFTSTL-ELPEELKALEKLKYLDMDDHQQVME-EG-NCQSD----------DAESLLKEMLCLEQ 425 (483)
Q Consensus 360 ~~~~~l~-~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~n~~~~~-p~-~~~l~----------~~~~~~~~l~~l~~ 425 (483)
..++.++ +|++|++++|.+. .+|..+..++ |+.|++++|.+... |. +..++ .....+..+..+++
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 245 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTT
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCC
Confidence 8888887 8899999888865 6777777776 88888888887654 33 33221 01112233666778
Q ss_pred cccceeeccCcc-----ccCCCCCcccccceeeeeee
Q 038724 426 LNIIRLTSCSLC-----SLCGLPTVQCLTSRRLNLEV 457 (483)
Q Consensus 426 L~~L~l~~~~l~-----~l~~l~~l~~l~l~~~~~~~ 457 (483)
|+.|++++|.+. .+..+++|+.|++++|.+..
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 888888888764 35667778888887777763
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=1.9e-15 Score=141.28 Aligned_cols=152 Identities=24% Similarity=0.234 Sum_probs=103.7
Q ss_pred cceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 296 LGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
+.++.|++++|.++.+++. ..+++|++|++++|.++.+++. ..+++|++|++++|. +..+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEEC
Confidence 4566677777776665432 4566777777777776666552 566677777777775 4566666677777777777
Q ss_pred cCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc-----CCCCCccc
Q 038724 374 SFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL-----CGLPTVQC 447 (483)
Q Consensus 374 ~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-----~~l~~l~~ 447 (483)
++|.+..+|+. +..+++|+.|++++|++...| +..+..+++|+.|++++|++..+ ..+++|+.
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLP-----------PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-----------TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-----------hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence 77777766643 667777777777777655442 23366788999999999987553 55788888
Q ss_pred ccceeeeeeeeecc
Q 038724 448 LTSRRLNLEVEDWH 461 (483)
Q Consensus 448 l~l~~~~~~~~~~~ 461 (483)
|++++|.+...+..
T Consensus 177 L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 177 LLLQENSLYTIPKG 190 (290)
T ss_dssp EECCSSCCCCCCTT
T ss_pred EECCCCcCCccChh
Confidence 88888888755443
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=150.13 Aligned_cols=180 Identities=22% Similarity=0.222 Sum_probs=108.9
Q ss_pred hhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCc
Q 038724 283 KLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPS 360 (483)
Q Consensus 283 ~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 360 (483)
.+..+.+..+..+++|+.|++++|.++.+++. ..+++|++|+|++|.++.+++..|..+++|++|++++|.+....+.
T Consensus 75 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 154 (440)
T 3zyj_A 75 QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY 154 (440)
T ss_dssp CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT
T ss_pred cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHH
Confidence 33444444445555666666666666555432 3456666666666666666555556666666666666654433334
Q ss_pred ccccCcCCCEEeccCCC-CCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcc-
Q 038724 361 GISKLVSLQHLDISFTS-TLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLC- 437 (483)
Q Consensus 361 ~~~~l~~L~~L~l~~~~-i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~- 437 (483)
.+..+++|++|++++|. +..+|.. +..+++|++|++++|.+..+| .+..+++|+.|++++|.+.
T Consensus 155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-------------~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-------------NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-------------CCTTCSSCCEEECTTSCCCE
T ss_pred HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-------------ccCCCcccCEEECCCCccCc
Confidence 55566666666666543 5555543 556666666666666644332 3667889999999999874
Q ss_pred ----ccCCCCCcccccceeeeeeeeecccccCccc-eeecCCc
Q 038724 438 ----SLCGLPTVQCLTSRRLNLEVEDWHKCTGEVH-KVLQSGG 475 (483)
Q Consensus 438 ----~l~~l~~l~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~ 475 (483)
.+.++++|+.|++++|++.......+.++.. ..+++.+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 4577888999999888888765544444333 3444444
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=1.9e-15 Score=150.88 Aligned_cols=180 Identities=18% Similarity=0.170 Sum_probs=135.2
Q ss_pred cceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 296 LGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
++++.|++++|.++.+++. ..+++|++|+|++|.+..+++..|..+++|++|+|++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 5789999999999988654 67999999999999999999888999999999999999865555566899999999999
Q ss_pred cCCCCCccCcc-ccCCcCCCEEecCCCCCcCC-CC--CCCCc---------cchhhHhhhccccccccceeeccCcc---
Q 038724 374 SFTSTLELPEE-LKALEKLKYLDMDDHQQVME-EG--NCQSD---------DAESLLKEMLCLEQLNIIRLTSCSLC--- 437 (483)
Q Consensus 374 ~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~-p~--~~~l~---------~~~~~~~~l~~l~~L~~L~l~~~~l~--- 437 (483)
++|.+..+|.. +..+++|+.|++++|..... |. +..+. ........+..+++|+.|++++|.+.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccC
Confidence 99999999874 88999999999999654443 32 32221 11111234666777888888888763
Q ss_pred --ccCCCCCcccccceeeeeeeeecccccCccc-eeecCCc
Q 038724 438 --SLCGLPTVQCLTSRRLNLEVEDWHKCTGEVH-KVLQSGG 475 (483)
Q Consensus 438 --~l~~l~~l~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~ 475 (483)
.+..+++|+.|++++|.+.......+.++.. ..+++.+
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 3567778888888887777655444444333 3444444
No 28
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.1e-15 Score=133.92 Aligned_cols=149 Identities=26% Similarity=0.298 Sum_probs=124.8
Q ss_pred ccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 295 WLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
.++++.|++++|.++.+++. ..+++|++|++++|.++.+++..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35789999999999988764 5789999999999999999888889999999999999976555555578999999999
Q ss_pred ccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccccCCCCCcccccce
Q 038724 373 ISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSLCGLPTVQCLTSR 451 (483)
Q Consensus 373 l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~l~~l~~l~l~ 451 (483)
+++|.+..+|.. +..+++|++|++++|.+...|. ..+..+++|+.|++++|++. ..++.++.|++.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~~~--~~~~~l~~L~~~ 173 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-----------GVFDRLTSLQYIWLHDNPWD--CTCPGIRYLSEW 173 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----------TTTTTCTTCCEEECCSCCBC--CCTTTTHHHHHH
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCH-----------HHhccCCCccEEEecCCCee--cCCCCHHHHHHH
Confidence 999999998876 7889999999999998765422 23677899999999999864 456788888887
Q ss_pred eeeee
Q 038724 452 RLNLE 456 (483)
Q Consensus 452 ~~~~~ 456 (483)
.+++.
T Consensus 174 ~n~~~ 178 (208)
T 2o6s_A 174 INKHS 178 (208)
T ss_dssp HHHCT
T ss_pred HHhCC
Confidence 77665
No 29
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=134.40 Aligned_cols=134 Identities=20% Similarity=0.227 Sum_probs=85.6
Q ss_pred ceEEEEccccccccccCC---CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 297 GLRRMSLMNNQIKTLLNT---PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
.++.|++++|.++.+++. ..+++|++|++++|.++.+++..|..+++|++|+|++|.+.+..|..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 345677777777666432 35667777777777777666666667777777777777654444455666777777777
Q ss_pred cCCCCCcc-CccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccccCC
Q 038724 374 SFTSTLEL-PEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSLCG 441 (483)
Q Consensus 374 ~~~~i~~l-p~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~ 441 (483)
++|.+..+ |..+..+++|++|+|++|.+... .+..+..+++|+.|++++|++.+-+.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-----------APGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-----------CTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEE-----------CHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77776666 34466677777777777765433 12345566677777777777655443
No 30
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=5.4e-15 Score=136.18 Aligned_cols=152 Identities=19% Similarity=0.225 Sum_probs=128.2
Q ss_pred cccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
...+++++.|++++|.++.++....+++|++|++++|.++.+++ +..+++|++|++++|+ +..+|. +.. ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc-cCCcCc-ccc-CcccEE
Confidence 45678899999999999998876789999999999999999887 8899999999999997 455664 333 899999
Q ss_pred eccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc---cCCCCCcccc
Q 038724 372 DISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS---LCGLPTVQCL 448 (483)
Q Consensus 372 ~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~l~~l~~l 448 (483)
++++|.+..+| .+..+++|+.|++++|++... ..+..+++|+.|++++|.+.. +..+++|+.|
T Consensus 112 ~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-------------~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L 177 (263)
T 1xeu_A 112 FLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-------------VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWI 177 (263)
T ss_dssp ECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-------------GGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEE
T ss_pred EccCCccCCCh-hhcCcccccEEECCCCcCCCC-------------hHHccCCCCCEEECCCCcCcchHHhccCCCCCEE
Confidence 99999999986 589999999999999996532 257889999999999998754 5667888899
Q ss_pred cceeeeeeeeeccc
Q 038724 449 TSRRLNLEVEDWHK 462 (483)
Q Consensus 449 ~l~~~~~~~~~~~~ 462 (483)
++++|.+...+...
T Consensus 178 ~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 178 DLTGQKCVNEPVKY 191 (263)
T ss_dssp EEEEEEEECCCEEC
T ss_pred eCCCCcccCCcccc
Confidence 99988887654443
No 31
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=3.1e-15 Score=134.83 Aligned_cols=146 Identities=19% Similarity=0.147 Sum_probs=121.0
Q ss_pred eEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCC
Q 038724 298 LRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTS 377 (483)
Q Consensus 298 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 377 (483)
.+.++.+++.++.+|.. ..++|++|++++|.+..+++..|..+++|++|+|++|.+....+..+..+++|++|++++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 34688899999888764 34899999999999999988889999999999999998544444567899999999999999
Q ss_pred CCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCCCCCcccccce
Q 038724 378 TLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLPTVQCLTSR 451 (483)
Q Consensus 378 i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~~l~~l~l~ 451 (483)
+..+|.. +..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+.. +..+++|+.|+++
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~l------------p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTEL------------PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSC------------CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCccChhHhCcchhhCeEeccCCccccc------------CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 9999876 68999999999999997643 4457889999999999998855 4556777777776
Q ss_pred eeeee
Q 038724 452 RLNLE 456 (483)
Q Consensus 452 ~~~~~ 456 (483)
.|.+.
T Consensus 168 ~N~~~ 172 (229)
T 3e6j_A 168 GNPWD 172 (229)
T ss_dssp TSCBC
T ss_pred CCCcc
Confidence 65543
No 32
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=135.24 Aligned_cols=146 Identities=15% Similarity=0.205 Sum_probs=121.2
Q ss_pred EEEEccccccccccCCCCCCcccEEEecCCcccccc-chhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCC
Q 038724 299 RRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIK-NGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTS 377 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 377 (483)
+.+++++|.++.+|.. ....++.|++++|.++.++ ...|..+++|++|++++|++.+..|..+..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 3789999999988753 3457899999999999884 4568899999999999998766666789999999999999999
Q ss_pred CCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCCCCCcccccce
Q 038724 378 TLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLPTVQCLTSR 451 (483)
Q Consensus 378 i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~~l~~l~l~ 451 (483)
+..+|.. +..+++|+.|+|++|.+..+ .+..+..+++|+.|++++|.+.. +..+++|+.|+++
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCV-----------GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCB-----------CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeE-----------CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 9998876 88999999999999997654 23457788999999999998754 4567788888877
Q ss_pred eeeee
Q 038724 452 RLNLE 456 (483)
Q Consensus 452 ~~~~~ 456 (483)
+|.+.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 77665
No 33
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=2.7e-15 Score=134.37 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=124.1
Q ss_pred EEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCC
Q 038724 299 RRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTST 378 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i 378 (483)
+.++.+++.++.+|... .++++.|++++|.++.+++..|..+++|++|+|++|.+....|..+..+++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 45788899998887642 37999999999999999988899999999999999987777789999999999999999999
Q ss_pred CccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCCCCCccccccee
Q 038724 379 LELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLPTVQCLTSRR 452 (483)
Q Consensus 379 ~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~~l~~l~l~~ 452 (483)
..+|.. +..+++|+.|+|++|.+..+ .+..+..+++|+.|++++|.+.. +..+++|+.|++++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCL-----------RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEe-----------CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 999987 68899999999999997654 23457889999999999999854 45567777777766
Q ss_pred eeee
Q 038724 453 LNLE 456 (483)
Q Consensus 453 ~~~~ 456 (483)
|.+.
T Consensus 162 N~~~ 165 (220)
T 2v9t_B 162 NPFI 165 (220)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 6553
No 34
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=5.5e-15 Score=139.54 Aligned_cols=153 Identities=20% Similarity=0.247 Sum_probs=95.9
Q ss_pred cccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
+..+++|+.|++++|.++.++....+++|++|++++|.++.+++ +..+++|++|++++|.+ ..+|. +..+++|++|
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L 156 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYL 156 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEE
T ss_pred HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEE
Confidence 34455566666666666555544555666666666666555543 55566666666666643 33332 5556666666
Q ss_pred eccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc---cCCCCCcccc
Q 038724 372 DISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS---LCGLPTVQCL 448 (483)
Q Consensus 372 ~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~l~~l~~l 448 (483)
++++|.+..+|. +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.. +..+++|+.|
T Consensus 157 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L 222 (308)
T 1h6u_A 157 SIGNAQVSDLTP-LANLSKLTTLKADDNKISDI-------------SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222 (308)
T ss_dssp ECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-------------GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEE
T ss_pred EccCCcCCCChh-hcCCCCCCEEECCCCccCcC-------------hhhcCCCCCCEEEccCCccCccccccCCCCCCEE
Confidence 666666655554 55666666666666654322 127788999999999998754 5778889999
Q ss_pred cceeeeeeeeeccc
Q 038724 449 TSRRLNLEVEDWHK 462 (483)
Q Consensus 449 ~l~~~~~~~~~~~~ 462 (483)
++++|.+...+...
T Consensus 223 ~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 223 TLTNQTITNQPVFY 236 (308)
T ss_dssp EEEEEEEECCCEEC
T ss_pred EccCCeeecCCeee
Confidence 99988887654433
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=1.4e-15 Score=143.67 Aligned_cols=154 Identities=21% Similarity=0.317 Sum_probs=106.7
Q ss_pred cccccceEEEEccccccccccC---CCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCc-cCCcccccCcC
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLN---TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLT-KLPSGISKLVS 367 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~ 367 (483)
+..+++|+.|++++|.++.++. ...+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 4456677777777777776654 2456777777777777776666667777777777777776544 46667777777
Q ss_pred CCEEeccCCCCCcc-CccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCC
Q 038724 368 LQHLDISFTSTLEL-PEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCG 441 (483)
Q Consensus 368 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~ 441 (483)
|++|++++|.+..+ |..+..+++|+.|++++|.+...| +..+..+++|+.|++++|++.. +..
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-----------TFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC-----------SGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC-----------hhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 77777777777666 345677777777777777755432 1246678888888888888743 445
Q ss_pred CC-Ccccccceeeeee
Q 038724 442 LP-TVQCLTSRRLNLE 456 (483)
Q Consensus 442 l~-~l~~l~l~~~~~~ 456 (483)
++ +|+.|++++|.+.
T Consensus 246 ~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCTTCCEEECTTCCEE
T ss_pred hhccCCEEEccCCCee
Confidence 53 6777777776665
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=5.4e-15 Score=139.63 Aligned_cols=149 Identities=19% Similarity=0.278 Sum_probs=95.7
Q ss_pred cccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
+..+++|+.|++++|.++.+++...+++|++|++++|.++.++. +..+++|++|++++|.+ ..+| .+..+++|++|
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L 134 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQI-TDVT-PLAGLSNLQVL 134 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCC-CCCG-GGTTCTTCCEE
T ss_pred hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCC-CCch-hhcCCCCCCEE
Confidence 34455666666666666666555556666666666666665542 55666666666666653 3343 26666666666
Q ss_pred eccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc---cCCCCCcccc
Q 038724 372 DISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS---LCGLPTVQCL 448 (483)
Q Consensus 372 ~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~l~~l~~l 448 (483)
++++|.+..+|. +..+++|++|++++|.+... ..+..+++|+.|++++|.+.. +..+++|+.|
T Consensus 135 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 200 (308)
T 1h6u_A 135 YLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-------------TPLANLSKLTTLKADDNKISDISPLASLPNLIEV 200 (308)
T ss_dssp ECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-------------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred ECCCCccCcCcc-ccCCCCccEEEccCCcCCCC-------------hhhcCCCCCCEEECCCCccCcChhhcCCCCCCEE
Confidence 666666666654 56666666666666654322 126778888899998887754 4567788888
Q ss_pred cceeeeeeee
Q 038724 449 TSRRLNLEVE 458 (483)
Q Consensus 449 ~l~~~~~~~~ 458 (483)
++++|.+...
T Consensus 201 ~L~~N~l~~~ 210 (308)
T 1h6u_A 201 HLKNNQISDV 210 (308)
T ss_dssp ECTTSCCCBC
T ss_pred EccCCccCcc
Confidence 8888877654
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=145.60 Aligned_cols=120 Identities=25% Similarity=0.307 Sum_probs=74.5
Q ss_pred hcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCc-
Q 038724 284 LRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPS- 360 (483)
Q Consensus 284 l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~- 360 (483)
+.++....+..+++|+.|++++|.++.+++. ..+++|++|++++|.++.+++..+..+++|++|++++|+ +..+|.
T Consensus 64 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~ 142 (353)
T 2z80_A 64 ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGET 142 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSS
T ss_pred CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCch
Confidence 3344444455566677777777766666442 456667777777777666666656666777777777765 334443
Q ss_pred -ccccCcCCCEEeccCCC-CCccCc-cccCCcCCCEEecCCCCCcCC
Q 038724 361 -GISKLVSLQHLDISFTS-TLELPE-ELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 361 -~~~~l~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~l~~n~~~~~ 404 (483)
.+..+++|++|++++|. +..++. .+..+++|+.|++++|.+...
T Consensus 143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 56666777777777663 555543 366666666666666665554
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=5.1e-15 Score=157.50 Aligned_cols=121 Identities=26% Similarity=0.251 Sum_probs=77.7
Q ss_pred hcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcc
Q 038724 284 LRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSG 361 (483)
Q Consensus 284 l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 361 (483)
+.+..+..+..+++|+.|++++|.+++..+. ..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.+|..
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 3334444444555555666666555533222 34666777777777766555555677777777777777766677777
Q ss_pred cccCcCCCEEeccCCCCC-ccCccccCCcCCCEEecCCCCCcCC
Q 038724 362 ISKLVSLQHLDISFTSTL-ELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 362 ~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+...
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 777777777777777754 6666677777777777777766533
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=3.8e-15 Score=158.47 Aligned_cols=176 Identities=21% Similarity=0.228 Sum_probs=124.4
Q ss_pred hhhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCC
Q 038724 282 EKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLP 359 (483)
Q Consensus 282 ~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 359 (483)
+.+.+..+..+..+++|+.|++++|.+++..+. ..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.+|
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 444555666666777788888888887754432 467778888888887776666667777788888888887777777
Q ss_pred cccccCcCCCEEeccCCCC-CccCcc------------------------------------------------------
Q 038724 360 SGISKLVSLQHLDISFTST-LELPEE------------------------------------------------------ 384 (483)
Q Consensus 360 ~~~~~l~~L~~L~l~~~~i-~~lp~~------------------------------------------------------ 384 (483)
..++.+++|++|++++|.+ +.+|..
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 7777777777777777763 344432
Q ss_pred ----------------ccCCcCCCEEecCCCCCcCC-CC-CCCCc-----------cchhhHhhhccccccccceeeccC
Q 038724 385 ----------------LKALEKLKYLDMDDHQQVME-EG-NCQSD-----------DAESLLKEMLCLEQLNIIRLTSCS 435 (483)
Q Consensus 385 ----------------~~~l~~L~~L~l~~n~~~~~-p~-~~~l~-----------~~~~~~~~l~~l~~L~~L~l~~~~ 435 (483)
+..+++|+.|++++|++... |. ++.++ ....+|..++.+++|+.|++++|+
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 23346677777777777655 54 43332 334677788889999999999998
Q ss_pred cc-----ccCCCCCcccccceeeeeee
Q 038724 436 LC-----SLCGLPTVQCLTSRRLNLEV 457 (483)
Q Consensus 436 l~-----~l~~l~~l~~l~l~~~~~~~ 457 (483)
+. .+..++.|+.|++++|+++.
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred ccCcCChHHhCCCCCCEEECcCCcccc
Confidence 74 46778888899998888864
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=2.5e-15 Score=155.30 Aligned_cols=102 Identities=21% Similarity=0.223 Sum_probs=69.3
Q ss_pred hhhhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccC
Q 038724 281 LEKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKL 358 (483)
Q Consensus 281 ~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 358 (483)
.+.+.++.+..+..+++|+.|++++|.++.+++. ..+++|++|+|++|.+..+++..|..+++|++|++++|.+.+..
T Consensus 84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence 3445555555566667777777777777776653 45677777777777777777766677777777777777665656
Q ss_pred CcccccCcCCCEEeccCCCCCccC
Q 038724 359 PSGISKLVSLQHLDISFTSTLELP 382 (483)
Q Consensus 359 p~~~~~l~~L~~L~l~~~~i~~lp 382 (483)
|..++.+++|++|++++|.+..+|
T Consensus 164 ~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 164 DDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCC
T ss_pred hhhhhcCCcCcEEECcCCCCCCcC
Confidence 666777777777777777665554
No 41
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=9.7e-15 Score=136.63 Aligned_cols=154 Identities=20% Similarity=0.269 Sum_probs=117.8
Q ss_pred cccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
+..+++++.|++++|.++.+++...+++|++|++++|.+..++. +..+++|++|++++|.+ ..+ +.+..+++|++|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i-~~~-~~l~~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI-SDI-NGLVHLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCC-CCC-GGGGGCTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcC-CCC-hhhcCCCCCCEE
Confidence 44567788888888888877776778888888888888877654 77788888888888864 334 367788888888
Q ss_pred eccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc---cCCCCCcccc
Q 038724 372 DISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS---LCGLPTVQCL 448 (483)
Q Consensus 372 ~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~l~~l~~l 448 (483)
++++|.+..+ ..+..+++|++|++++|.+... + .+..+++|+.|++++|.+.. +..+++|+.|
T Consensus 140 ~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~------------~-~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L 205 (291)
T 1h6t_A 140 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI------------V-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 205 (291)
T ss_dssp ECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC------------G-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEE
T ss_pred EccCCcCCcc-hhhccCCCCCEEEccCCccccc------------h-hhcCCCccCEEECCCCcCCCChhhccCCCCCEE
Confidence 8888888777 4578888888888888875432 1 17788999999999998744 5778888999
Q ss_pred cceeeeeeeeecccc
Q 038724 449 TSRRLNLEVEDWHKC 463 (483)
Q Consensus 449 ~l~~~~~~~~~~~~~ 463 (483)
++++|.+...+...+
T Consensus 206 ~l~~n~i~~~~~~~~ 220 (291)
T 1h6t_A 206 ELFSQECLNKPINHQ 220 (291)
T ss_dssp EEEEEEEECCCEECC
T ss_pred ECcCCcccCCccccc
Confidence 998888876555443
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.59 E-value=5.5e-15 Score=148.69 Aligned_cols=178 Identities=20% Similarity=0.163 Sum_probs=111.9
Q ss_pred hhhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCC
Q 038724 282 EKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLP 359 (483)
Q Consensus 282 ~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 359 (483)
..+.++.+..+..+++|+.|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++++|.+....|
T Consensus 66 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh
Confidence 344555555566677777777777777766653 456777777777777777666667777777777777776655556
Q ss_pred cccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCCCcCC-CC-CCCCc-------------------------
Q 038724 360 SGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQQVME-EG-NCQSD------------------------- 411 (483)
Q Consensus 360 ~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~-p~-~~~l~------------------------- 411 (483)
..+..+++|++|++++|.+..+|.. +..+++|+.|++++|.+... +. +..+.
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 6677777777777777777766654 66666677777666665544 21 22111
Q ss_pred ----------cchhhHhhhccccccccceeeccCccc-----cCCCCCcccccceeeeeeeee
Q 038724 412 ----------DAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLPTVQCLTSRRLNLEVED 459 (483)
Q Consensus 412 ----------~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~~l~~l~l~~~~~~~~~ 459 (483)
........+..+++|+.|++++|.+.. +..+++|+.|++++|++....
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC
Confidence 001111245566677777777766532 455666777777766666543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.59 E-value=8.3e-15 Score=139.93 Aligned_cols=181 Identities=17% Similarity=0.174 Sum_probs=133.4
Q ss_pred hhhhcccCccccccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCc--cC
Q 038724 281 LEKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLT--KL 358 (483)
Q Consensus 281 ~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~ 358 (483)
.+.+....+..+..+++|+.|++++|.++.++... .++|++|++++|.+..+++..+..+++|++|++++|.+.. ..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 85 NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp SSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred CCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 34555666666777888888888888888776543 3788888888888888888778888899999999887532 56
Q ss_pred CcccccCcCCCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCC-CC-CCCCc-----------cchhhHhhhccccc
Q 038724 359 PSGISKLVSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVME-EG-NCQSD-----------DAESLLKEMLCLEQ 425 (483)
Q Consensus 359 p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~-p~-~~~l~-----------~~~~~~~~l~~l~~ 425 (483)
|..+..+++|++|++++|.+..+|..+. ++|+.|++++|.+... |. +..+. .....+..+..+++
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred hhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC
Confidence 6778888888888888888888877654 6788888888877665 33 33221 12223346778889
Q ss_pred cccceeeccCccc----cCCCCCcccccceeeeeeeeeccccc
Q 038724 426 LNIIRLTSCSLCS----LCGLPTVQCLTSRRLNLEVEDWHKCT 464 (483)
Q Consensus 426 L~~L~l~~~~l~~----l~~l~~l~~l~l~~~~~~~~~~~~~~ 464 (483)
|+.|++++|.+.. +..+++|+.|++++|.+...+...+.
T Consensus 242 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp CCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred CCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 9999999998754 45678888888888888776555443
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=146.57 Aligned_cols=162 Identities=23% Similarity=0.272 Sum_probs=121.4
Q ss_pred cceEEEEccccccccccC--CCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcc-cccCcCCCEEe
Q 038724 296 LGLRRMSLMNNQIKTLLN--TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSG-ISKLVSLQHLD 372 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~ 372 (483)
++++.|++++|.++.+++ ...+++|++|++++|.++.+++..|..+++|++|++++|.+ ..+|.. ++.+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEE
Confidence 479999999999998876 36899999999999999999888899999999999999975 455554 89999999999
Q ss_pred ccCCCCCccCc--cccCCcCCCEEecCCCC-CcCC-CC-CCCCc-----------cchhhHhhhccccccccceeeccCc
Q 038724 373 ISFTSTLELPE--ELKALEKLKYLDMDDHQ-QVME-EG-NCQSD-----------DAESLLKEMLCLEQLNIIRLTSCSL 436 (483)
Q Consensus 373 l~~~~i~~lp~--~~~~l~~L~~L~l~~n~-~~~~-p~-~~~l~-----------~~~~~~~~l~~l~~L~~L~l~~~~l 436 (483)
+++|.+..+|. .+..+++|++|++++|. +... |. +..++ .....+..+..+++|+.|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 99999999997 58899999999999995 4433 22 33221 1122244555666666666666655
Q ss_pred ccc-----CCCCCcccccceeeeeeee
Q 038724 437 CSL-----CGLPTVQCLTSRRLNLEVE 458 (483)
Q Consensus 437 ~~l-----~~l~~l~~l~l~~~~~~~~ 458 (483)
..+ ..+++|+.|++++|.+...
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred ccchhhhhhhcccccEEECCCCccccc
Confidence 332 2355666666666655543
No 45
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=5.6e-15 Score=138.27 Aligned_cols=148 Identities=22% Similarity=0.299 Sum_probs=129.3
Q ss_pred ccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 293 LKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 293 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
..+++++.|++++|.++.++....+++|++|++++|.+..+++ +..+++|++|++++|. +..+| .+..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence 3577899999999999998877889999999999999999887 8899999999999997 44555 599999999999
Q ss_pred ccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc---cCCCCCccccc
Q 038724 373 ISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS---LCGLPTVQCLT 449 (483)
Q Consensus 373 l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~l~~l~~l~ 449 (483)
+++|.+..+| .+..+++|++|++++|.+... ..+..+++|+.|++++|.+.. +..+++|+.|+
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~ 184 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDI-------------TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-------------GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-------------hhhccCCCCCEEEccCCccccchhhcCCCccCEEE
Confidence 9999999985 688999999999999986532 467889999999999998744 67788999999
Q ss_pred ceeeeeeee
Q 038724 450 SRRLNLEVE 458 (483)
Q Consensus 450 l~~~~~~~~ 458 (483)
+++|.+...
T Consensus 185 L~~N~i~~l 193 (291)
T 1h6t_A 185 LSKNHISDL 193 (291)
T ss_dssp CCSSCCCBC
T ss_pred CCCCcCCCC
Confidence 999988754
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=149.09 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=106.5
Q ss_pred hhhhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccC
Q 038724 281 LEKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKL 358 (483)
Q Consensus 281 ~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 358 (483)
...+..+.+..+..+++|+.|++++|.++.+.+. ..+++|++|+|++|.+..+++..|..+++|++|++++|.+....
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 41 KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120 (477)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC
Confidence 3455566666777888999999999999887553 57899999999999999998888889999999999999877777
Q ss_pred CcccccCcCCCEEeccCCCCCccCc-cccCCcCCCEEecCCCCCcCCC
Q 038724 359 PSGISKLVSLQHLDISFTSTLELPE-ELKALEKLKYLDMDDHQQVMEE 405 (483)
Q Consensus 359 p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~n~~~~~p 405 (483)
|..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+...|
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 8889999999999999999877754 5889999999999999887764
No 47
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=2.6e-15 Score=145.17 Aligned_cols=136 Identities=24% Similarity=0.234 Sum_probs=100.5
Q ss_pred cceEEEEccccccccccCC--C-CCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 296 LGLRRMSLMNNQIKTLLNT--P-SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
..++.|++++|.++.+++. . .+++|++|+|++|.++.+++..|..+++|++|+|++|++....+..+..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3467788888888887764 2 678888888888888888877788888888888888875555555678888888888
Q ss_pred ccCCCCCccC-ccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc
Q 038724 373 ISFTSTLELP-EELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL 439 (483)
Q Consensus 373 l~~~~i~~lp-~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 439 (483)
+++|.+..++ ..+..+++|++|+|++|.+..+|. ..+..+..+++|+.|++++|.+..+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV--------ELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG--------GGTC----CTTCCEEECCSSCCCCC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH--------HHhcCcccCCcCCEEECCCCCCCcc
Confidence 8888887774 457888888888888888765532 1112235678888888888877554
No 48
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=6.4e-15 Score=129.55 Aligned_cols=134 Identities=15% Similarity=0.136 Sum_probs=115.6
Q ss_pred ccccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCE
Q 038724 291 DALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQH 370 (483)
Q Consensus 291 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 370 (483)
.+..+++++.|++++|.++.++....+++|++|++++|.+....+..+..+++|++|++++|.+....|..++.+++|++
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 35567899999999999988877788999999999999998865566899999999999999887778889999999999
Q ss_pred EeccCCC-CCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc
Q 038724 371 LDISFTS-TLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS 438 (483)
Q Consensus 371 L~l~~~~-i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 438 (483)
|++++|. +..+| .+..+++|++|++++|.+... ..+..+++|+.|++++|++..
T Consensus 141 L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-------------~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 141 IDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-------------RGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-------------TTGGGCSSCCEEEECBC----
T ss_pred EEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-------------HHhccCCCCCEEEeeCcccCC
Confidence 9999998 99998 699999999999999986532 257889999999999998643
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.58 E-value=7.7e-15 Score=143.56 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=70.6
Q ss_pred cccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcc-
Q 038724 285 RDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSG- 361 (483)
Q Consensus 285 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~- 361 (483)
..+....+..+++++.|++++|.++.+++. ..+++|++|++++|.+..+++..+..+++|++|++++|. +..+|..
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~ 136 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI 136 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHH
Confidence 333333444556666666666666655442 456666666666666666666656666666666666665 3344433
Q ss_pred cccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCCCcC
Q 038724 362 ISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQQVM 403 (483)
Q Consensus 362 ~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~ 403 (483)
+..+++|++|++++|.+..+++. +..+++|+.|++++|.+..
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 45666666666666666555443 5666666666666666543
No 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.58 E-value=1e-14 Score=142.65 Aligned_cols=180 Identities=17% Similarity=0.135 Sum_probs=137.0
Q ss_pred hhhhhhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCc
Q 038724 279 DILEKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLT 356 (483)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 356 (483)
...+.+.+..+..+..+++|+.|++++|.++.+++. ..+++|++|++++|.++.+++..|..+++|++|++++|.+..
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 344556666666777889999999999999988764 578999999999999999998888999999999999998777
Q ss_pred cCCcccccCcCCCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCC-------------------CC--CCCCc----
Q 038724 357 KLPSGISKLVSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVME-------------------EG--NCQSD---- 411 (483)
Q Consensus 357 ~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~-------------------p~--~~~l~---- 411 (483)
..|..+..+++|++|++++|.+..++ +..+++|++|++++|.+... |. ...++
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 233 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKL 233 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEEC
T ss_pred cChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEEC
Confidence 67778999999999999999988875 44566666666666654432 11 11111
Q ss_pred --cchhhHhhhccccccccceeeccCcc-----ccCCCCCcccccceeeeeeeeec
Q 038724 412 --DAESLLKEMLCLEQLNIIRLTSCSLC-----SLCGLPTVQCLTSRRLNLEVEDW 460 (483)
Q Consensus 412 --~~~~~~~~l~~l~~L~~L~l~~~~l~-----~l~~l~~l~~l~l~~~~~~~~~~ 460 (483)
.....+..+..+++|+.|++++|.+. .+..+++|+.|++++|++...+.
T Consensus 234 ~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (390)
T 3o6n_A 234 QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289 (390)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC
T ss_pred CCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc
Confidence 11112245777888999999998864 45778889999998888876543
No 51
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=3.7e-15 Score=144.11 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=128.4
Q ss_pred EEEEccccccccccCCCCCCcccEEEecCCccccccchhhh-cCCCccEEEccCCccCccCCcccccCcCCCEEeccCCC
Q 038724 299 RRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQ-FMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTS 377 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 377 (483)
+.++++++.++.+|.. -...++.|+|++|.++.+++..+. .+++|++|+|++|++....|..+..+++|++|++++|.
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 4689999999988753 346799999999999999988787 89999999999998766666789999999999999999
Q ss_pred CCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc--------CCCCCcccc
Q 038724 378 TLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL--------CGLPTVQCL 448 (483)
Q Consensus 378 i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l--------~~l~~l~~l 448 (483)
+..+|.. +..+++|+.|+|++|.+..+ .+..+..+++|+.|++++|.+..+ ..+++|+.|
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~-----------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVV-----------DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEE-----------CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEE-----------CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 9999875 88999999999999997644 234678899999999999998654 458899999
Q ss_pred cceeeeeeeeecccc
Q 038724 449 TSRRLNLEVEDWHKC 463 (483)
Q Consensus 449 ~l~~~~~~~~~~~~~ 463 (483)
++++|++...+...+
T Consensus 169 ~L~~N~l~~l~~~~~ 183 (361)
T 2xot_A 169 DLSSNKLKKLPLTDL 183 (361)
T ss_dssp ECCSSCCCCCCHHHH
T ss_pred ECCCCCCCccCHHHh
Confidence 999888876554433
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.57 E-value=5.4e-15 Score=139.64 Aligned_cols=173 Identities=18% Similarity=0.173 Sum_probs=137.8
Q ss_pred ccccceEEEEccccccccccCC-CCCCcccEEEecCCccccccc-hhhhcCCCccEEEccCCccCccCCcccccCcCCCE
Q 038724 293 LKWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKN-GFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQH 370 (483)
Q Consensus 293 ~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 370 (483)
..+++|+.|++++|.++.++.. ..+++|++|++++|.+..+++ ..+..+++|++|++++|.+....|..+..+++|++
T Consensus 75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 3567899999999999887653 578999999999999988876 56888999999999999877778888999999999
Q ss_pred EeccCCCCCc--cCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCCCC
Q 038724 371 LDISFTSTLE--LPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLP 443 (483)
Q Consensus 371 L~l~~~~i~~--lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~ 443 (483)
|++++|.+.. +|..+..+++|++|++++|.+... .+..+..+++|+.|++++|.+.. +..++
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-----------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-----------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCc-----------CHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 9999999765 788899999999999999986543 24457788999999999998743 56688
Q ss_pred CcccccceeeeeeeeecccccCcc--ceeecCCcc
Q 038724 444 TVQCLTSRRLNLEVEDWHKCTGEV--HKVLQSGGS 476 (483)
Q Consensus 444 ~l~~l~l~~~~~~~~~~~~~~~~~--~~~~~~~~~ 476 (483)
+|+.|++++|.+............ -..+++.++
T Consensus 224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred cCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 999999999888765444333321 144444443
No 53
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=4.3e-15 Score=134.97 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=76.6
Q ss_pred ccccccceEEEEccccc-cccccCC--CCCCcccEEEecC-CccccccchhhhcCCCccEEEccCCccCccCCcccccCc
Q 038724 291 DALKWLGLRRMSLMNNQ-IKTLLNT--PSCPHLLTLFLND-NYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLV 366 (483)
Q Consensus 291 ~~~~~~~l~~l~l~~~~-~~~~~~~--~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 366 (483)
.+..+++++.|++++|. ++.+++. ..+++|++|++++ |.++.+++..|..+++|++|++++|. +..+|. +..++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-ccccc
Confidence 33444455555555553 4444432 2445555555554 55555544444455555555555554 222443 44444
Q ss_pred CCC---EEeccCC-CCCccCcc-ccCCcCCC-EEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccC-ccc-
Q 038724 367 SLQ---HLDISFT-STLELPEE-LKALEKLK-YLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCS-LCS- 438 (483)
Q Consensus 367 ~L~---~L~l~~~-~i~~lp~~-~~~l~~L~-~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~-l~~- 438 (483)
+|+ +|++++| .+..+|.. +..+++|+ .|++++|.+..+|. ..+.. ++|+.|++++|+ +..
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-----------~~~~~-~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-----------YAFNG-TKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-----------TTTTT-CEEEEEECTTCTTCCEE
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-----------hhcCC-CCCCEEEcCCCCCcccC
Confidence 444 5555555 45555443 44555555 55555554332221 11222 566666666663 432
Q ss_pred ----cCCC-CCcccccceeeeeeeeecc
Q 038724 439 ----LCGL-PTVQCLTSRRLNLEVEDWH 461 (483)
Q Consensus 439 ----l~~l-~~l~~l~l~~~~~~~~~~~ 461 (483)
+..+ ++|+.|+++++++...+..
T Consensus 196 ~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 196 DKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred CHHHhhccccCCcEEECCCCccccCChh
Confidence 3445 5666666666666544433
No 54
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=8.2e-15 Score=146.47 Aligned_cols=89 Identities=21% Similarity=0.236 Sum_probs=41.5
Q ss_pred cccccceEEEEccccccccccCC--CCCCcccEEEecCCccccc--cchhhhcCCCccEEEccCCccCccCCcc-cccCc
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDI--KNGFFQFMPCLKVLNLSYNRFLTKLPSG-ISKLV 366 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~ 366 (483)
+..+++|+.|++++|.++.+.+. ..+++|++|++++|.+.+. ....+..+++|++|++++|.+.+..|.. +..++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 33444455555555555444321 3445555555555554432 1222444555555555555443333433 44555
Q ss_pred CCCEEeccCCCCCc
Q 038724 367 SLQHLDISFTSTLE 380 (483)
Q Consensus 367 ~L~~L~l~~~~i~~ 380 (483)
+|++|++++|.+..
T Consensus 155 ~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 155 RFHVLDLTFNKVKS 168 (455)
T ss_dssp TCCEEECTTCCBSC
T ss_pred cccEEeCCCCcccc
Confidence 55555555555433
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.57 E-value=3.8e-15 Score=155.20 Aligned_cols=134 Identities=25% Similarity=0.231 Sum_probs=114.6
Q ss_pred cceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 296 LGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
..++.|++++|.|+.+++. ..+++|++|+|++|.++.++++.|..+++|++|+|++|++....|..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4688999999999999864 67899999999999999999988999999999999999754444456899999999999
Q ss_pred cCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc
Q 038724 374 SFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL 439 (483)
Q Consensus 374 ~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 439 (483)
++|++..+|+. ++++++|++|++++|.+... ..+..+..+++|+.|++++|++..+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~----------~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSF----------KLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------CCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccC----------CCchhhccchhhhhhcccCcccccc
Confidence 99999999875 89999999999999987532 2345678889999999999987543
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.57 E-value=1.1e-14 Score=139.22 Aligned_cols=181 Identities=17% Similarity=0.171 Sum_probs=124.9
Q ss_pred hhhhcccCccccccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccC--ccC
Q 038724 281 LEKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFL--TKL 358 (483)
Q Consensus 281 ~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~ 358 (483)
.+.+....+..+..+++|+.|++++|.++.++.... ++|++|++++|.+..+++..|..+++|++|++++|.+. +..
T Consensus 87 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 87 NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp SSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred CCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 344555556666777888888888888887765433 78888888888888888877888888999999888753 255
Q ss_pred CcccccCcCCCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCC-CC-CCCCc-----------cchhhHhhhccccc
Q 038724 359 PSGISKLVSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVME-EG-NCQSD-----------DAESLLKEMLCLEQ 425 (483)
Q Consensus 359 p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~-p~-~~~l~-----------~~~~~~~~l~~l~~ 425 (483)
|..+..+ +|++|++++|.+..+|..+. ++|+.|++++|.+... |. +..+. .....+..+..+++
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred cccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 6666666 67777777777766666543 5677777777766655 22 32221 11222345677888
Q ss_pred cccceeeccCccc----cCCCCCcccccceeeeeeeeecccccC
Q 038724 426 LNIIRLTSCSLCS----LCGLPTVQCLTSRRLNLEVEDWHKCTG 465 (483)
Q Consensus 426 L~~L~l~~~~l~~----l~~l~~l~~l~l~~~~~~~~~~~~~~~ 465 (483)
|+.|++++|.+.. +..+++|+.|++++|.+...+...+.+
T Consensus 243 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred CCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 8888888887744 455677888888888877665554443
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.56 E-value=4.7e-15 Score=153.80 Aligned_cols=133 Identities=21% Similarity=0.136 Sum_probs=92.9
Q ss_pred cceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 296 LGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
+.++.|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++++|.+.+..|..++.+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 5677777777777776653 46777777777777777776666777777777777777655555777777777777777
Q ss_pred cCCCCCccC-ccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc
Q 038724 374 SFTSTLELP-EELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS 438 (483)
Q Consensus 374 ~~~~i~~lp-~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 438 (483)
++|.+..+| ..++++++|++|++++|.+.. ...|..++.+++|+.|++++|.+..
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHS----------CKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCC----------CCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccc----------eechHhHhhcCCCCEEEccCCccee
Confidence 777777666 447777777777777777542 1234456666677777777766543
No 58
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.56 E-value=1.9e-15 Score=157.22 Aligned_cols=173 Identities=12% Similarity=0.143 Sum_probs=130.1
Q ss_pred hhcccCccccccccceEEEEcccccccc------------------ccCC-C--CCCcccEEEecCCccccccchhhhcC
Q 038724 283 KLRDVVPSDALKWLGLRRMSLMNNQIKT------------------LLNT-P--SCPHLLTLFLNDNYLQDIKNGFFQFM 341 (483)
Q Consensus 283 ~l~~~~~~~~~~~~~l~~l~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~n~~~~~~~~~~~~l 341 (483)
.+.. ++..+..+++|+.|++++|.+++ +|.. . .+++|++|++++|.+....|..+..+
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 4455 66777788999999999999988 6654 4 68999999999998877666678899
Q ss_pred CCccEEEccCCc-cCc-cCCcccccC------cCCCEEeccCCCCCccCc--cccCCcCCCEEecCCCCCc-CCCCCCCC
Q 038724 342 PCLKVLNLSYNR-FLT-KLPSGISKL------VSLQHLDISFTSTLELPE--ELKALEKLKYLDMDDHQQV-MEEGNCQS 410 (483)
Q Consensus 342 ~~L~~L~l~~n~-~~~-~~p~~~~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~n~~~-~~p~~~~l 410 (483)
++|++|++++|+ +.+ .+|..++.+ ++|++|++++|.+..+|. .++.+++|++|++++|.+. .+|.++.+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l 352 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence 999999999997 666 788888877 899999999999889998 7999999999999999887 44643322
Q ss_pred c----------cchhhHhhhccccc-cccceeeccCccccCC------CCCcccccceeeeee
Q 038724 411 D----------DAESLLKEMLCLEQ-LNIIRLTSCSLCSLCG------LPTVQCLTSRRLNLE 456 (483)
Q Consensus 411 ~----------~~~~~~~~l~~l~~-L~~L~l~~~~l~~l~~------l~~l~~l~l~~~~~~ 456 (483)
. .....|..+..+++ |+.|++++|.+..+.. +++|+.|++++|.+.
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC
Confidence 1 11245566777777 7777777777644322 224555555555554
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=1.5e-14 Score=149.43 Aligned_cols=175 Identities=17% Similarity=0.166 Sum_probs=118.3
Q ss_pred hhhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCC
Q 038724 282 EKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLP 359 (483)
Q Consensus 282 ~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 359 (483)
+.+..+.+..+..+++|+.|++++|.++.+++. ..+++|++|+|++|.+..+++..|+.+++|++|+|++|.+. .+|
T Consensus 61 ~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~ 139 (597)
T 3oja_B 61 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139 (597)
T ss_dssp CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCC
Confidence 334455555566778899999999998887753 57889999999999998888888888999999999999744 555
Q ss_pred cc-cccCcCCCEEeccCCCCCccCc-cccCCcCCCEEecCCCCCcCCC-C-CCCCc---cchhhHhhhccccccccceee
Q 038724 360 SG-ISKLVSLQHLDISFTSTLELPE-ELKALEKLKYLDMDDHQQVMEE-G-NCQSD---DAESLLKEMLCLEQLNIIRLT 432 (483)
Q Consensus 360 ~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~n~~~~~p-~-~~~l~---~~~~~~~~l~~l~~L~~L~l~ 432 (483)
.. ++.+++|++|++++|.+..+|+ .+..+++|++|++++|.+...| . +..+. .....+..+...++|+.|+++
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 44 6888999999999998877766 4888899999999999876542 1 21111 111122223333445555555
Q ss_pred ccCccccC--CCCCcccccceeeeeee
Q 038724 433 SCSLCSLC--GLPTVQCLTSRRLNLEV 457 (483)
Q Consensus 433 ~~~l~~l~--~l~~l~~l~l~~~~~~~ 457 (483)
+|.+..+. ..++|+.|++++|++..
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTD 246 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCC
T ss_pred CCcccccccccCCCCCEEECCCCCCCC
Confidence 55543321 12355555555555543
No 60
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=7.8e-15 Score=125.49 Aligned_cols=134 Identities=25% Similarity=0.182 Sum_probs=106.9
Q ss_pred cceEEEEccccccc--cccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 296 LGLRRMSLMNNQIK--TLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 296 ~~l~~l~l~~~~~~--~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
++++.|++++|.++ .++.. ..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 67888999999988 66655 5788999999999988887 4478889999999999986666787777799999999
Q ss_pred ccCCCCCccC--ccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc
Q 038724 373 ISFTSTLELP--EELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL 439 (483)
Q Consensus 373 l~~~~i~~lp--~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 439 (483)
+++|.+..+| ..+..+++|++|++++|.+...|. .....+..+++|+.|++++|.+..+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND--------YRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT--------HHHHHHTTCSSCCEETTEETTSCBC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH--------HHHHHHHhCccCcEecCCCCChhhc
Confidence 9999988887 568889999999999998654421 1123577888999999988886544
No 61
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=2.5e-14 Score=146.84 Aligned_cols=156 Identities=20% Similarity=0.258 Sum_probs=122.8
Q ss_pred cccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
+..+++|+.|++++|.++.+++...+++|+.|+|++|.+..++. +..+++|+.|+|++|.+. .+| .+..+++|+.|
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESL 136 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTT--STTCTTCCEEECTTSCCC-CCG-GGGGCTTCSEE
T ss_pred HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChh--hccCCCCCEEEecCCCCC-CCc-cccCCCccCEE
Confidence 45677888888888888888777788888888888888887653 778888888888888643 443 58888888888
Q ss_pred eccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcc---ccCCCCCcccc
Q 038724 372 DISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLC---SLCGLPTVQCL 448 (483)
Q Consensus 372 ~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~---~l~~l~~l~~l 448 (483)
+|++|.+..+ ..+..+++|+.|+|++|.+... .+ +..+++|+.|+|++|.+. .+..+++|+.|
T Consensus 137 ~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~-----------~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L 202 (605)
T 1m9s_A 137 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-----------VP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 202 (605)
T ss_dssp ECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC-----------GG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEE
T ss_pred ECCCCccCCc-hhhcccCCCCEEECcCCcCCCc-----------hh--hccCCCCCEEECcCCCCCCChHHccCCCCCEE
Confidence 8888888887 4688888888888888886532 11 778899999999999874 45778889999
Q ss_pred cceeeeeeeeecccccC
Q 038724 449 TSRRLNLEVEDWHKCTG 465 (483)
Q Consensus 449 ~l~~~~~~~~~~~~~~~ 465 (483)
+++.|.+...+...+..
T Consensus 203 ~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 203 ELFSQECLNKPINHQSN 219 (605)
T ss_dssp ECCSEEEECCCCCCCSS
T ss_pred EccCCcCcCCccccccc
Confidence 99998888766555443
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=4.5e-15 Score=134.81 Aligned_cols=159 Identities=14% Similarity=0.209 Sum_probs=128.9
Q ss_pred cceEEEEccccccccccCC--CCCCcccEEEecCCc-cccccchhhhcCCCccEEEccC-CccCccCCcccccCcCCCEE
Q 038724 296 LGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNY-LQDIKNGFFQFMPCLKVLNLSY-NRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L 371 (483)
..++.|++++|.++.+++. ..+++|++|++++|. ++.+++..|..+++|++|++++ |.+....|..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4788999999999998874 578999999999997 9999887899999999999998 87555555678899999999
Q ss_pred eccCCCCCccCccccCCcCCC---EEecCCC-CCcCCCCCCCCccchhhHhhhccccccc-cceeeccCccccC----CC
Q 038724 372 DISFTSTLELPEELKALEKLK---YLDMDDH-QQVMEEGNCQSDDAESLLKEMLCLEQLN-IIRLTSCSLCSLC----GL 442 (483)
Q Consensus 372 ~l~~~~i~~lp~~~~~l~~L~---~L~l~~n-~~~~~p~~~~l~~~~~~~~~l~~l~~L~-~L~l~~~~l~~l~----~l 442 (483)
++++|.+..+|. +..+++|+ +|++++| .+..+| +..+..+++|+ .|++++|.+..+. ..
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-----------~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP-----------VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC-----------TTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcC-----------cccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 999999999987 88888888 9999999 755432 23477899999 9999999886542 22
Q ss_pred CCcccccceee-eeeeeecccccCc
Q 038724 443 PTVQCLTSRRL-NLEVEDWHKCTGE 466 (483)
Q Consensus 443 ~~l~~l~l~~~-~~~~~~~~~~~~~ 466 (483)
++|+.|++++| ++...+...+.+.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhcc
Confidence 68899999888 4776654444443
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.56 E-value=1.9e-14 Score=149.24 Aligned_cols=123 Identities=19% Similarity=0.247 Sum_probs=77.8
Q ss_pred hhhcccCccccccccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCc
Q 038724 282 EKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPS 360 (483)
Q Consensus 282 ~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 360 (483)
..+.++.+..+..+++++.|++++|.++.+|.. ..+++|++|++++|.+...++..+..+++|++|++++|.+.+.+|.
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 344455555566677788888888877777653 5667778888877777776665566777777777777765544443
Q ss_pred c-cccCcCCCEEeccCCCCCcc---CccccCCcCCCEEecCCCCCcCC
Q 038724 361 G-ISKLVSLQHLDISFTSTLEL---PEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 361 ~-~~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
. +..+++|++|++++|.+..+ |..+..+++|+.|++++|.+...
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 3 55666666666666665544 33455555555555555554443
No 64
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=3.3e-14 Score=126.16 Aligned_cols=146 Identities=23% Similarity=0.210 Sum_probs=120.6
Q ss_pred EEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCC
Q 038724 299 RRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTST 378 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i 378 (483)
+.++..++.++.++.. ..++|++|++++|.++.+++..|..+++|++|++++|++....+..+..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3567778888777643 457999999999999999988889999999999999986555455678999999999999999
Q ss_pred CccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCCCCCccccccee
Q 038724 379 LELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCGLPTVQCLTSRR 452 (483)
Q Consensus 379 ~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~l~~l~~l~l~~ 452 (483)
..+|.. +..+++|++|++++|.+...|. ..+..+++|+.|++++|.+.. +..+++|+.|++++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPD-----------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCT-----------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCH-----------hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 999876 6899999999999999765422 246789999999999998754 45678888888887
Q ss_pred eeee
Q 038724 453 LNLE 456 (483)
Q Consensus 453 ~~~~ 456 (483)
|.+.
T Consensus 158 N~~~ 161 (208)
T 2o6s_A 158 NPWD 161 (208)
T ss_dssp CCBC
T ss_pred CCee
Confidence 7554
No 65
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.55 E-value=3.1e-14 Score=142.26 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=39.0
Q ss_pred ccCCcCCCEEecCCCCCcCC-CC-CCCCc-----------cchhhHhhhccccccccceeeccCcc-----ccCCCCCcc
Q 038724 385 LKALEKLKYLDMDDHQQVME-EG-NCQSD-----------DAESLLKEMLCLEQLNIIRLTSCSLC-----SLCGLPTVQ 446 (483)
Q Consensus 385 ~~~l~~L~~L~l~~n~~~~~-p~-~~~l~-----------~~~~~~~~l~~l~~L~~L~l~~~~l~-----~l~~l~~l~ 446 (483)
+..+++|+.|++++|.+... |. +..++ .....+..+..+++|+.|++++|.+. .+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 55555555555555555544 22 22211 11222344566666666666666553 234556666
Q ss_pred cccceeeeeeeee
Q 038724 447 CLTSRRLNLEVED 459 (483)
Q Consensus 447 ~l~l~~~~~~~~~ 459 (483)
.|++++|++...+
T Consensus 375 ~L~L~~N~l~~~~ 387 (455)
T 3v47_A 375 ELALDTNQLKSVP 387 (455)
T ss_dssp EEECCSSCCSCCC
T ss_pred EEECCCCccccCC
Confidence 6666666665443
No 66
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=1.6e-14 Score=126.44 Aligned_cols=132 Identities=23% Similarity=0.305 Sum_probs=110.8
Q ss_pred EEEEccccccccccCCCCCCcccEEEecCCccccccch-hhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCC
Q 038724 299 RRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNG-FFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTS 377 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 377 (483)
+.+++++|.++.+|.. ...++++|++++|.+..+++. .|..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 5688999999888763 234899999999999988774 58899999999999998777778899999999999999999
Q ss_pred CCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccccCCC
Q 038724 378 TLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSLCGL 442 (483)
Q Consensus 378 i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~l 442 (483)
+..+|.. +..+++|++|++++|++... .+..+..+++|+.|++++|++.+-..+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCV-----------MPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEE-----------CTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCee-----------CHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9888776 88999999999999997643 344577889999999999998765444
No 67
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=4.1e-15 Score=157.98 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=133.3
Q ss_pred CccccccccceEEEEcccccccc------------------ccCC-C--CCCcccEEEecCCccccccchhhhcCCCccE
Q 038724 288 VPSDALKWLGLRRMSLMNNQIKT------------------LLNT-P--SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKV 346 (483)
Q Consensus 288 ~~~~~~~~~~l~~l~l~~~~~~~------------------~~~~-~--~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 346 (483)
+|..+..+++|+.|++++|.+++ +|.. . .+++|++|+|++|.+....|..+..+++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56677789999999999999998 6655 4 7999999999999887766677999999999
Q ss_pred EEccCCc-cCc-cCCcccccCc-------CCCEEeccCCCCCccCc--cccCCcCCCEEecCCCCCcCCCCCCCCc----
Q 038724 347 LNLSYNR-FLT-KLPSGISKLV-------SLQHLDISFTSTLELPE--ELKALEKLKYLDMDDHQQVMEEGNCQSD---- 411 (483)
Q Consensus 347 L~l~~n~-~~~-~~p~~~~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~n~~~~~p~~~~l~---- 411 (483)
|++++|+ +.+ .+|..++.++ +|++|++++|.+..+|. .++++++|+.|++++|.+..+|.++.++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~ 599 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTD 599 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceE
Confidence 9999998 666 7888887776 99999999999999999 8999999999999999987557544332
Q ss_pred ------cchhhHhhhccccc-cccceeeccCccccCC----C--CCcccccceeeeee
Q 038724 412 ------DAESLLKEMLCLEQ-LNIIRLTSCSLCSLCG----L--PTVQCLTSRRLNLE 456 (483)
Q Consensus 412 ------~~~~~~~~l~~l~~-L~~L~l~~~~l~~l~~----l--~~l~~l~l~~~~~~ 456 (483)
.....|..+..+++ |+.|++++|.+..+.. + ++|+.|++++|.+.
T Consensus 600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp EECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred EECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCC
Confidence 11245566777777 8888888877654422 2 23666666666654
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.55 E-value=3e-14 Score=136.19 Aligned_cols=171 Identities=19% Similarity=0.202 Sum_probs=100.8
Q ss_pred hcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcc
Q 038724 284 LRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSG 361 (483)
Q Consensus 284 l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 361 (483)
+..+.+..+..+++|+.|++++|.++.+.+. ..+++|++|++++|.+..++...+ ++|++|++++|.+....+..
T Consensus 66 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~ 142 (332)
T 2ft3_A 66 ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGV 142 (332)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGG
T ss_pred CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhH
Confidence 3334444455556666666666666655332 455666666666666665555432 55666666666543333334
Q ss_pred cccCcCCCEEeccCCCCCc---cCccccCCcCCCEEecCCCCCcCCCC-C-CCCc--------cchhhHhhhcccccccc
Q 038724 362 ISKLVSLQHLDISFTSTLE---LPEELKALEKLKYLDMDDHQQVMEEG-N-CQSD--------DAESLLKEMLCLEQLNI 428 (483)
Q Consensus 362 ~~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~n~~~~~p~-~-~~l~--------~~~~~~~~l~~l~~L~~ 428 (483)
+..+++|++|++++|.+.. .|..+..+ +|+.|++++|.+..+|. + ..++ .....+..+..+++|+.
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 221 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSC
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 6666666666666666542 23335555 66666666666655543 1 1121 22223356778888888
Q ss_pred ceeeccCccc-----cCCCCCcccccceeeeeeee
Q 038724 429 IRLTSCSLCS-----LCGLPTVQCLTSRRLNLEVE 458 (483)
Q Consensus 429 L~l~~~~l~~-----l~~l~~l~~l~l~~~~~~~~ 458 (483)
|++++|.+.. +..+++|+.|++++|.+...
T Consensus 222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 256 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256 (332)
T ss_dssp CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC
T ss_pred EECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec
Confidence 8888887643 55678888888888877744
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=1.8e-14 Score=136.37 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=59.6
Q ss_pred ccceEEEEccccccccc-cCC---CCCCcccEEEecCCccccccchhhhcC-----CCccEEEccCCccCccCCcccccC
Q 038724 295 WLGLRRMSLMNNQIKTL-LNT---PSCPHLLTLFLNDNYLQDIKNGFFQFM-----PCLKVLNLSYNRFLTKLPSGISKL 365 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~-~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~p~~~~~l 365 (483)
+++++.|++++|.+++. +.. ..+++|++|++++|.+...+ ..+..+ ++|++|++++|++.+..|..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 45566666666666532 221 34566666666666666553 334444 566666666665544444566666
Q ss_pred cCCCEEeccCCCCCc---cCccc--cCCcCCCEEecCCCCCc
Q 038724 366 VSLQHLDISFTSTLE---LPEEL--KALEKLKYLDMDDHQQV 402 (483)
Q Consensus 366 ~~L~~L~l~~~~i~~---lp~~~--~~l~~L~~L~l~~n~~~ 402 (483)
++|++|++++|.+.. +|..+ ..+++|++|++++|.+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 666666666665322 23333 55666666666666544
No 70
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=2.2e-14 Score=147.24 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=130.2
Q ss_pred ccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 293 LKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 293 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
..+..|+.|++++|.++.++....+++|+.|+|++|.+..+++ +..+++|+.|+|++|. +..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 4577899999999999999877889999999999999999887 8899999999999997 45555 799999999999
Q ss_pred ccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc---cCCCCCccccc
Q 038724 373 ISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS---LCGLPTVQCLT 449 (483)
Q Consensus 373 l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~l~~l~~l~ 449 (483)
|++|.+..+| .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+.. +..+++|+.|+
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-------------~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~ 181 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNKITDI-------------TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 181 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-------------GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCccCCc-------------hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEE
Confidence 9999999885 589999999999999986532 467889999999999998744 67889999999
Q ss_pred ceeeeeeee
Q 038724 450 SRRLNLEVE 458 (483)
Q Consensus 450 l~~~~~~~~ 458 (483)
+++|.+...
T Consensus 182 Ls~N~i~~l 190 (605)
T 1m9s_A 182 LSKNHISDL 190 (605)
T ss_dssp CCSSCCCBC
T ss_pred CcCCCCCCC
Confidence 999988764
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=1.3e-14 Score=145.82 Aligned_cols=122 Identities=21% Similarity=0.190 Sum_probs=63.3
Q ss_pred hhhcccCccccccccceEEEEccccccccccCCCCCCcccEEEecCCccccccch----------------hhhcCCCcc
Q 038724 282 EKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNG----------------FFQFMPCLK 345 (483)
Q Consensus 282 ~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----------------~~~~l~~L~ 345 (483)
+.+.+..+..+..+++|+.|++++|.++..++...+++|++|+|++|.+..+++. ....+++|+
T Consensus 44 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~ 123 (487)
T 3oja_A 44 NPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK 123 (487)
T ss_dssp SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCE
T ss_pred CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCC
Confidence 3444444455555666666666666666555555555666666655555443321 001234455
Q ss_pred EEEccCCccCccCCcccccCcCCCEEeccCCCCCcc-Ccccc-CCcCCCEEecCCCCCcC
Q 038724 346 VLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLEL-PEELK-ALEKLKYLDMDDHQQVM 403 (483)
Q Consensus 346 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~-~l~~L~~L~l~~n~~~~ 403 (483)
+|++++|.+.+..|..++.+++|++|++++|.+..+ |..+. .+++|++|+|++|.+..
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 555555554444444555555555555555554442 22332 45555555555555443
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=6e-15 Score=139.65 Aligned_cols=188 Identities=19% Similarity=0.109 Sum_probs=140.1
Q ss_pred hhhhhcccCcccc--ccccceEEEEccccccccccCC-CC-----CCcccEEEecCCccccccchhhhcCCCccEEEccC
Q 038724 280 ILEKLRDVVPSDA--LKWLGLRRMSLMNNQIKTLLNT-PS-----CPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSY 351 (483)
Q Consensus 280 ~~~~l~~~~~~~~--~~~~~l~~l~l~~~~~~~~~~~-~~-----~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 351 (483)
..+.+.+..+..+ ..+++|+.|++++|.++..+.. .. +++|++|++++|.+..+++..+..+++|++|++++
T Consensus 103 ~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 182 (312)
T 1wwl_A 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182 (312)
T ss_dssp EEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCS
T ss_pred cCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCC
Confidence 3445555556554 7789999999999999988432 12 38999999999999999988899999999999999
Q ss_pred CccCcc--CCccc--ccCcCCCEEeccCCCCCccC---cc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccc
Q 038724 352 NRFLTK--LPSGI--SKLVSLQHLDISFTSTLELP---EE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCL 423 (483)
Q Consensus 352 n~~~~~--~p~~~--~~l~~L~~L~l~~~~i~~lp---~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l 423 (483)
|++.+. .|..+ +.+++|++|++++|.+..+| .. +..+++|+.|++++|.+...+. ...+..+
T Consensus 183 N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~~~~~~l 252 (312)
T 1wwl_A 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG----------APSCDWP 252 (312)
T ss_dssp CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC----------CSCCCCC
T ss_pred CCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc----------hhhhhhc
Confidence 986654 34455 88999999999999998554 33 4678999999999999775421 1234557
Q ss_pred cccccceeeccCccccCC-C-CCcccccceeeeeeeeecccccCccc-eeecCCccccc
Q 038724 424 EQLNIIRLTSCSLCSLCG-L-PTVQCLTSRRLNLEVEDWHKCTGEVH-KVLQSGGSEIF 479 (483)
Q Consensus 424 ~~L~~L~l~~~~l~~l~~-l-~~l~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 479 (483)
++|+.|++++|.+..+.. + ++|+.|++++|++...+. ...... ..+++.++.+.
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred CCCCEEECCCCccChhhhhccCCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCC
Confidence 899999999998865532 1 578889998888876532 222222 55666665543
No 73
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.53 E-value=5e-15 Score=154.02 Aligned_cols=140 Identities=16% Similarity=0.191 Sum_probs=106.1
Q ss_pred CCCCcccEEEecCCcccc------------------ccchhhh--cCCCccEEEccCCccCccCCcccccCcCCCEEecc
Q 038724 315 PSCPHLLTLFLNDNYLQD------------------IKNGFFQ--FMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDIS 374 (483)
Q Consensus 315 ~~~~~L~~L~l~~n~~~~------------------~~~~~~~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 374 (483)
..+++|++|+|++|.+++ +|+. +. .+++|++|++++|++.+.+|..++.+++|++|+++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 568899999999999988 5555 66 89999999999998889999999999999999999
Q ss_pred CCC-CC--ccCccccCC------cCCCEEecCCCCCcCCCC---CCCCc-----------cchhhHhhhcccccccccee
Q 038724 375 FTS-TL--ELPEELKAL------EKLKYLDMDDHQQVMEEG---NCQSD-----------DAESLLKEMLCLEQLNIIRL 431 (483)
Q Consensus 375 ~~~-i~--~lp~~~~~l------~~L~~L~l~~n~~~~~p~---~~~l~-----------~~~~~~~~l~~l~~L~~L~l 431 (483)
+|. +. .+|..++.+ ++|++|++++|.+..+|. ++.+. .....| .+..+++|+.|++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 998 77 488888776 899999999999876554 33332 111333 5666677777777
Q ss_pred eccCccc----cCCCCC-cccccceeeeee
Q 038724 432 TSCSLCS----LCGLPT-VQCLTSRRLNLE 456 (483)
Q Consensus 432 ~~~~l~~----l~~l~~-l~~l~l~~~~~~ 456 (483)
++|.+.. +..++. |+.|++++|.+.
T Consensus 361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 361 AYNQITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp CSSEEEECCTTSEEECTTCCEEECCSSCCS
T ss_pred CCCccccccHhhhhhcccCcEEEccCCcCc
Confidence 7776543 344555 677777766665
No 74
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=5.9e-14 Score=122.76 Aligned_cols=132 Identities=18% Similarity=0.249 Sum_probs=111.1
Q ss_pred EEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCC
Q 038724 299 RRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTST 378 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i 378 (483)
+.+++++|.++.+|.. ..++|++|++++|.++.++. .|..+++|++|++++|.+....|..|..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4688999999988753 34789999999999998874 589999999999999987666667899999999999999999
Q ss_pred CccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccccCCCC
Q 038724 379 LELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSLCGLP 443 (483)
Q Consensus 379 ~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~l~ 443 (483)
..+|+. +..+++|++|+|++|.+..+|. ..+..+++|+.|++++|++.+-+.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPE-----------GAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCT-----------TTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeCh-----------hhhhcCccccEEEeCCCCeecCCcCH
Confidence 998874 8999999999999999765532 24677899999999999987655544
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=148.49 Aligned_cols=154 Identities=23% Similarity=0.198 Sum_probs=114.2
Q ss_pred cceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 296 LGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
+.++.|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++++|++....|..++.+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 4678888888888877653 57888888888888888888777888888888888888766666678888888888888
Q ss_pred cCCCCCccCc-cccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc-----CCCCCc--
Q 038724 374 SFTSTLELPE-ELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL-----CGLPTV-- 445 (483)
Q Consensus 374 ~~~~i~~lp~-~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-----~~l~~l-- 445 (483)
++|.+..+|. .++.+++|++|++++|.+... ..|..+..+++|+.|++++|.+..+ ..+++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~----------~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF----------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC----------CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred cccccccCCCccccccccccEEecCCCcccee----------cChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 8888888876 488888888888888876531 2345677788888888888876432 233333
Q ss_pred --ccccceeeeeeeee
Q 038724 446 --QCLTSRRLNLEVED 459 (483)
Q Consensus 446 --~~l~l~~~~~~~~~ 459 (483)
..++++++.+....
T Consensus 178 ~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp CCCEEECTTCCCCEEC
T ss_pred hhhhcccCCCCceecC
Confidence 45566665555443
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=146.12 Aligned_cols=144 Identities=17% Similarity=0.119 Sum_probs=98.1
Q ss_pred EEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCC
Q 038724 299 RRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTST 378 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i 378 (483)
+.+++++|.++.+|.... ++|++|++++|.+..+++..|..+++|++|++++|++.+..|..++.+++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 357777777777665332 6777778877777777766677777788888877776555577777777788888877777
Q ss_pred CccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc--cCCCCCc--ccccceeee
Q 038724 379 LELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS--LCGLPTV--QCLTSRRLN 454 (483)
Q Consensus 379 ~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~--l~~l~~l--~~l~l~~~~ 454 (483)
..+|.. .+++|++|++++|.+... ..|..++.+++|+.|++++|.+.. +..++.| +.|+++++.
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~----------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDAL----------PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSC----------CCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECT
T ss_pred eecCcc--ccCCccEEeccCCccccc----------cchhhhccCCcceEEEecCcccchhhccccccceeeEEEeeccc
Confidence 777765 677777888877775431 233456677777777777776632 3444444 555555554
Q ss_pred e
Q 038724 455 L 455 (483)
Q Consensus 455 ~ 455 (483)
+
T Consensus 150 l 150 (520)
T 2z7x_B 150 T 150 (520)
T ss_dssp T
T ss_pred c
Confidence 4
No 77
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.52 E-value=8.3e-14 Score=132.96 Aligned_cols=114 Identities=15% Similarity=0.200 Sum_probs=70.1
Q ss_pred cccccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCC
Q 038724 290 SDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQ 369 (483)
Q Consensus 290 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 369 (483)
..+..+++|+.|++++|.++.++... .++|++|++++|.+..+++..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 243 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCC
T ss_pred hhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCC
Confidence 34445566666666666666554332 25666666666666666555566666666666666654444444566666666
Q ss_pred EEeccCCCCCccCccccCCcCCCEEecCCCCCcCC
Q 038724 370 HLDISFTSTLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 370 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
+|++++|.+..+|..+..+++|+.|++++|.+..+
T Consensus 244 ~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 244 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp EEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred EEECCCCcCccCChhhccCCCcCEEECCCCcCCcc
Confidence 66666666666666666666666666666665554
No 78
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.52 E-value=8.8e-14 Score=133.74 Aligned_cols=109 Identities=20% Similarity=0.278 Sum_probs=60.9
Q ss_pred cccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
+..+++|+.|++++|.++.++....+++|++|++++|.+..+++ +..+++|++|++++|.....++ .+..+++|++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEE
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEE
Confidence 34455566666666666655544556666666666666655544 5555666666666654333333 35555555555
Q ss_pred eccCCCCCccCccccCCcCCCEEecCCCCCcCC
Q 038724 372 DISFTSTLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 372 ~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
++++|.+..++. +..+++|+.|++++|.+...
T Consensus 161 ~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 161 TVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp ECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCC
T ss_pred EecCCCcCCchh-hccCCCCCEEEccCCccccc
Confidence 555555555543 55555555555555554443
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=136.44 Aligned_cols=170 Identities=18% Similarity=0.081 Sum_probs=124.8
Q ss_pred hhhhhhcccCcccc--ccccceEEEEccccccccccC------CCCCCcccEEEecCCccccccchhhhcCCCccEEEcc
Q 038724 279 DILEKLRDVVPSDA--LKWLGLRRMSLMNNQIKTLLN------TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLS 350 (483)
Q Consensus 279 ~~~~~l~~~~~~~~--~~~~~l~~l~l~~~~~~~~~~------~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 350 (483)
...+.+.+..+..+ ..+++|+.|++++|.++...+ ...+++|++|++++|.+...++..+..+++|++|+++
T Consensus 98 l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 177 (310)
T 4glp_A 98 LEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS 177 (310)
T ss_dssp EESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC
T ss_pred eeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC
Confidence 34455566666555 677888899999998886432 1357899999999999988888778889999999999
Q ss_pred CCccCcc--C--CcccccCcCCCEEeccCCCCCccCcc----ccCCcCCCEEecCCCCCcCC-CC-CCCCccchhhHhhh
Q 038724 351 YNRFLTK--L--PSGISKLVSLQHLDISFTSTLELPEE----LKALEKLKYLDMDDHQQVME-EG-NCQSDDAESLLKEM 420 (483)
Q Consensus 351 ~n~~~~~--~--p~~~~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~n~~~~~-p~-~~~l~~~~~~~~~l 420 (483)
+|++.+. + +..++.+++|++|++++|.+..+|.. +..+++|++|++++|.+... |. + ..+
T Consensus 178 ~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~----------~~~ 247 (310)
T 4glp_A 178 DNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA----------PRC 247 (310)
T ss_dssp SCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC----------SSC
T ss_pred CCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH----------Hhc
Confidence 9975542 2 22346788899999999998877653 46778999999999987655 43 1 112
Q ss_pred ccccccccceeeccCccccCC--CCCcccccceeeeeeee
Q 038724 421 LCLEQLNIIRLTSCSLCSLCG--LPTVQCLTSRRLNLEVE 458 (483)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~l~~--l~~l~~l~l~~~~~~~~ 458 (483)
..+++|+.|++++|.+..+.. .++|+.|++++|++...
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC
T ss_pred cCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC
Confidence 223689999999998866532 36888888888888753
No 80
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.52 E-value=3.3e-14 Score=147.41 Aligned_cols=146 Identities=18% Similarity=0.096 Sum_probs=80.9
Q ss_pred ccccceEEEEccccccccccCC-CCCCcccEEEecCCccccccc-hhhhcCCCccEEEccCCccCccCCcccccCcCCCE
Q 038724 293 LKWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKN-GFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQH 370 (483)
Q Consensus 293 ~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 370 (483)
..+++++.|++++|.++.++.. ..+++|+.|++++|.+...++ ..+..+++|++|++++|.+.+..|..++.+++|++
T Consensus 373 ~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp HCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 3445555566666555554422 345566666666666555544 34555666666666666555555555666666666
Q ss_pred EeccCCCCCc--cCccccCCcCCCEEecCCCCCcCC-CC-CCCCc-----------cchhhHhhhccccccccceeeccC
Q 038724 371 LDISFTSTLE--LPEELKALEKLKYLDMDDHQQVME-EG-NCQSD-----------DAESLLKEMLCLEQLNIIRLTSCS 435 (483)
Q Consensus 371 L~l~~~~i~~--lp~~~~~l~~L~~L~l~~n~~~~~-p~-~~~l~-----------~~~~~~~~l~~l~~L~~L~l~~~~ 435 (483)
|++++|.+.. +|..+..+++|+.|++++|.+... |. +..++ .....+..+..+++|+.|++++|+
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 6666666443 455556666666666666655444 22 22111 112234556666667777777776
Q ss_pred ccc
Q 038724 436 LCS 438 (483)
Q Consensus 436 l~~ 438 (483)
+..
T Consensus 533 l~~ 535 (606)
T 3vq2_A 533 IET 535 (606)
T ss_dssp CCC
T ss_pred Ccc
Confidence 644
No 81
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=3e-14 Score=122.82 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=99.9
Q ss_pred ccccceEEEEccccccccccCCCCCC-cccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcc-cccCcCCCE
Q 038724 293 LKWLGLRRMSLMNNQIKTLLNTPSCP-HLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSG-ISKLVSLQH 370 (483)
Q Consensus 293 ~~~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~ 370 (483)
....+++.|++++|.++.++....+. +|++|++++|.++.+ + .+..+++|++|++++|.+. .+|.. +..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~-~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-c-ccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 34667888899988888776554444 888999998888877 2 3788888899999888744 44544 488888999
Q ss_pred EeccCCCCCccCc--cccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCc
Q 038724 371 LDISFTSTLELPE--ELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSL 436 (483)
Q Consensus 371 L~l~~~~i~~lp~--~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l 436 (483)
|++++|.++.+|. .+..+++|++|++++|.+...|. .....+..+++|+.|++++|..
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~--------~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH--------YRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT--------HHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh--------HHHHHHHHCCccceeCCCcCCH
Confidence 9998888888887 68888888999998888653322 1112367788888888888875
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=6.1e-14 Score=146.08 Aligned_cols=149 Identities=17% Similarity=0.093 Sum_probs=124.0
Q ss_pred EEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCc
Q 038724 301 MSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLE 380 (483)
Q Consensus 301 l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~ 380 (483)
.+-++..++.+|..- -+++++|+|++|.++.+++..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|++..
T Consensus 36 ~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 36 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 455556677776531 2589999999999999999889999999999999998666566779999999999999999999
Q ss_pred cCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc------cCCCCCcccccceee
Q 038724 381 LPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS------LCGLPTVQCLTSRRL 453 (483)
Q Consensus 381 lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~------l~~l~~l~~l~l~~~ 453 (483)
+|.. |.++++|++|++++|++..+|. ..++.+++|+.|++++|.+.. +..++.|+.|++++|
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~-----------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLEN-----------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTT-----------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCCh-----------hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 9976 7999999999999999775532 247889999999999998743 456889999999998
Q ss_pred eeeeeecc
Q 038724 454 NLEVEDWH 461 (483)
Q Consensus 454 ~~~~~~~~ 461 (483)
.+......
T Consensus 184 ~l~~~~~~ 191 (635)
T 4g8a_A 184 KIQSIYCT 191 (635)
T ss_dssp CCCEECGG
T ss_pred cccccccc
Confidence 88765433
No 83
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.50 E-value=2e-14 Score=147.27 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=99.1
Q ss_pred cceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 296 LGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
+.++.|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++++|.+.+..|..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4677777777777766543 56777777777777777777666777777777777777654444445777777777777
Q ss_pred cCCCCCcc--CccccCCcCCCEEecCCCCCcCC-CC--CCCCc-----------cchhhHhhhccccccccceeeccCcc
Q 038724 374 SFTSTLEL--PEELKALEKLKYLDMDDHQQVME-EG--NCQSD-----------DAESLLKEMLCLEQLNIIRLTSCSLC 437 (483)
Q Consensus 374 ~~~~i~~l--p~~~~~l~~L~~L~l~~n~~~~~-p~--~~~l~-----------~~~~~~~~l~~l~~L~~L~l~~~~l~ 437 (483)
++|.+..+ |..++++++|++|++++|..... |. +..++ .....+..+..+++|+.|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 77776643 45577777777777777763322 21 22111 11223344555556666666655542
Q ss_pred cc-----CCCCCcccccceeeeeee
Q 038724 438 SL-----CGLPTVQCLTSRRLNLEV 457 (483)
Q Consensus 438 ~l-----~~l~~l~~l~l~~~~~~~ 457 (483)
.+ ..+++|+.|++++|++..
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccchhhHhhcccccEEEccCCcccc
Confidence 21 235666667666666654
No 84
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=3.4e-14 Score=118.88 Aligned_cols=128 Identities=26% Similarity=0.163 Sum_probs=92.9
Q ss_pred ccceEEEEccccccc--cccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 295 WLGLRRMSLMNNQIK--TLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~--~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
.++++.|++++|.++ .++.. ..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356778888888887 55544 5678888888888888777 347778888888888887655577777778888888
Q ss_pred eccCCCCCccC--ccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceee
Q 038724 372 DISFTSTLELP--EELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLT 432 (483)
Q Consensus 372 ~l~~~~i~~lp--~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~ 432 (483)
++++|.+..+| ..+..+++|++|++++|.+...|. .....+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND--------YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT--------HHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH--------HHHHHHHHCCCcccccCC
Confidence 88888887765 567888888888888887553321 112356677777777765
No 85
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.50 E-value=8.4e-14 Score=144.38 Aligned_cols=176 Identities=20% Similarity=0.219 Sum_probs=91.7
Q ss_pred cccccceEEEEcccccccccc--C--CCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcc-cccCc
Q 038724 292 ALKWLGLRRMSLMNNQIKTLL--N--TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSG-ISKLV 366 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~--~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~ 366 (483)
+..+++++.|++++|.++... + ...+++|++|++++|.+...++..+..+++|++|++++|.+.+..|.. +..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 334455555555555555443 1 234555555555555555555555555555666666555544443322 55555
Q ss_pred CCCEEeccCCCCCcc-CccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcc-----ccC
Q 038724 367 SLQHLDISFTSTLEL-PEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLC-----SLC 440 (483)
Q Consensus 367 ~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~-----~l~ 440 (483)
+|++|++++|.+... |..+..+++|+.|++++|.+... ....+..+..+++|+.|++++|.+. .+.
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 497 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG--------NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG--------EECSSCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc--------ccccchhhccCCCccEEECCCCccCccChhhhc
Confidence 566666665554443 23355555666666666554321 0011134566667777777777653 245
Q ss_pred CCCCcccccceeeeeeeeecccccCccceeecCCc
Q 038724 441 GLPTVQCLTSRRLNLEVEDWHKCTGEVHKVLQSGG 475 (483)
Q Consensus 441 ~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (483)
.+++|+.|++++|++.......+..+....+++.+
T Consensus 498 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~ 532 (606)
T 3t6q_A 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS 532 (606)
T ss_dssp TCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCS
T ss_pred cccCCCEEECCCCccCcCChhHhCcccccEEECcC
Confidence 56666777776666655443333333333444444
No 86
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.50 E-value=4.1e-14 Score=144.88 Aligned_cols=177 Identities=22% Similarity=0.201 Sum_probs=141.9
Q ss_pred hhhhcccCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCc-c
Q 038724 281 LEKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLT-K 357 (483)
Q Consensus 281 ~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~ 357 (483)
...+.+..+..+..++++++|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++++|.+.+ .
T Consensus 35 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 35 FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC
T ss_pred CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccc
Confidence 3445566666777889999999999999988763 678999999999999999999889999999999999998654 4
Q ss_pred CCcccccCcCCCEEeccCCC-CCccCc-cccCCcCCCEEecCCCCCcCC-CC-CCCCc----------cchhhHhh-hcc
Q 038724 358 LPSGISKLVSLQHLDISFTS-TLELPE-ELKALEKLKYLDMDDHQQVME-EG-NCQSD----------DAESLLKE-MLC 422 (483)
Q Consensus 358 ~p~~~~~l~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~l~~n~~~~~-p~-~~~l~----------~~~~~~~~-l~~ 422 (483)
.|..++.+++|++|++++|. ++.+|. .+.++++|++|++++|.+... |. +..++ .....+.. +..
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 194 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI 194 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHS
T ss_pred hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhh
Confidence 57789999999999999998 888875 599999999999999998876 55 55443 11223333 356
Q ss_pred ccccccceeeccCcccc--------CCCCCcccccceeeeeee
Q 038724 423 LEQLNIIRLTSCSLCSL--------CGLPTVQCLTSRRLNLEV 457 (483)
Q Consensus 423 l~~L~~L~l~~~~l~~l--------~~l~~l~~l~l~~~~~~~ 457 (483)
+++|+.|++++|.+..+ ..++.|+.|+++++.+..
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 89999999999987653 345677888877776653
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.50 E-value=6.7e-14 Score=143.69 Aligned_cols=145 Identities=19% Similarity=0.212 Sum_probs=106.3
Q ss_pred eEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCC
Q 038724 298 LRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTS 377 (483)
Q Consensus 298 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 377 (483)
.+.+++++|.++.+|... .++|++|++++|.+..+++..|..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 367888888888776532 3788888888888888877778888888888888887666667778888888888888888
Q ss_pred CCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc--cCCCCCc--ccccceee
Q 038724 378 TLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS--LCGLPTV--QCLTSRRL 453 (483)
Q Consensus 378 i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~--l~~l~~l--~~l~l~~~ 453 (483)
+..+|.. .+++|++|++++|.+... ..+..+..+++|+.|++++|.+.. +..++.| +.|+++.+
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l----------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVL----------PVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBC----------CCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEES
T ss_pred CCccCcc--ccccCCEEECCCCCcccc----------CchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecc
Confidence 8888876 788888888888886532 123467778888888888887643 3333444 66666665
Q ss_pred ee
Q 038724 454 NL 455 (483)
Q Consensus 454 ~~ 455 (483)
.+
T Consensus 180 ~l 181 (562)
T 3a79_B 180 SY 181 (562)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 88
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=2e-13 Score=117.73 Aligned_cols=128 Identities=22% Similarity=0.198 Sum_probs=105.4
Q ss_pred EEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCC
Q 038724 299 RRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTST 378 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i 378 (483)
+.+++.++.++.++. ...++|+.|++++|.++.+++..+..+++|++|++++|++....+..+..+++|++|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 468888888888774 3457999999999999998888788999999999999976554455578999999999999999
Q ss_pred CccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc
Q 038724 379 LELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS 438 (483)
Q Consensus 379 ~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 438 (483)
..+|.. +..+++|++|++++|.+..+|. ..+..+++|+.|++++|++.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPD-----------GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCT-----------TTTTTCTTCCEEECCSSCBCC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCH-----------HHhcCCcccCEEEecCCCeec
Confidence 998876 6889999999999998765432 235678899999999998754
No 89
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.49 E-value=1.6e-13 Score=136.65 Aligned_cols=161 Identities=20% Similarity=0.161 Sum_probs=73.5
Q ss_pred cccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 294 KWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
.+++++.|++++|.++.++ ...+++|++|++++|.++.++ +..+++|++|++++|++.+ +| ++.+++|++|++
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred ccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 3444555555555544442 344445555555555544432 3445555555555554222 33 445555555555
Q ss_pred cCCCCCccCccccCCcCCCEEecCCCCCcCCCC---CCCCc-------cchhhHhhhccccccccceeeccCccc--cCC
Q 038724 374 SFTSTLELPEELKALEKLKYLDMDDHQQVMEEG---NCQSD-------DAESLLKEMLCLEQLNIIRLTSCSLCS--LCG 441 (483)
Q Consensus 374 ~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~---~~~l~-------~~~~~~~~l~~l~~L~~L~l~~~~l~~--l~~ 441 (483)
++|.+..+| ++.+++|+.|++++|....... ...++ .....+ +..+++|+.|++++|.+.. +..
T Consensus 135 ~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~l~~ 210 (457)
T 3bz5_A 135 ARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQ 210 (457)
T ss_dssp TTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCCCTT
T ss_pred CCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeecccc
Confidence 555544443 4444555555555543221100 11110 000011 4445555555555555432 345
Q ss_pred CCCcccccceeeeeeeeecccccC
Q 038724 442 LPTVQCLTSRRLNLEVEDWHKCTG 465 (483)
Q Consensus 442 l~~l~~l~l~~~~~~~~~~~~~~~ 465 (483)
+++|+.|++++|++...++..+..
T Consensus 211 l~~L~~L~Ls~N~l~~ip~~~l~~ 234 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTEIDVTPLTQ 234 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTT
T ss_pred CCCCCEEECcCCcccccCccccCC
Confidence 556666666666666544443333
No 90
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.49 E-value=4.6e-14 Score=133.90 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=73.5
Q ss_pred ceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccc-cCcCCCEEeccC
Q 038724 297 GLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGIS-KLVSLQHLDISF 375 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~ 375 (483)
+++.|++++|.++.++. ..+++|+.|++++|.++.+++..+..+++|++|++++|.+....|..+. .+++|++|++++
T Consensus 100 ~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 100 SIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp TCCEEECCSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CcCEEECCCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 34444444444443332 1245555555555555555554455555566666665554443344332 455555555555
Q ss_pred CCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc----cCCCCCcccccce
Q 038724 376 TSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS----LCGLPTVQCLTSR 451 (483)
Q Consensus 376 ~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~----l~~l~~l~~l~l~ 451 (483)
|.+..+|. ...+++|+.|++++|.+..+ +..+..+++|+.|++++|.+.. +..+++|+.|+++
T Consensus 179 N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 179 NFIYDVKG-QVVFAKLKTLDLSSNKLAFM------------GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp SCCCEEEC-CCCCTTCCEEECCSSCCCEE------------CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred CcCccccc-ccccccCCEEECCCCcCCcc------------hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEcc
Confidence 55555543 22355555555555554322 2234555566666666665533 3344555555555
Q ss_pred eeeee
Q 038724 452 RLNLE 456 (483)
Q Consensus 452 ~~~~~ 456 (483)
+|.+.
T Consensus 246 ~N~~~ 250 (317)
T 3o53_A 246 GNGFH 250 (317)
T ss_dssp TCCCB
T ss_pred CCCcc
Confidence 55443
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.49 E-value=1.5e-13 Score=132.17 Aligned_cols=160 Identities=15% Similarity=0.219 Sum_probs=85.9
Q ss_pred cccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 294 KWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
.+++++.+++.++.++.++....+++|++|++++|.+..+++ +..+++|++|++++|. +..+| .+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEEC
Confidence 344555555555555555444455555555555555555444 4555555555555554 22333 3555555555555
Q ss_pred cCCCCCccCccccCCcCCCEEecCCCCCcCC-CCCCCCc---------cchhhHhhhccccccccceeeccCccc---cC
Q 038724 374 SFTSTLELPEELKALEKLKYLDMDDHQQVME-EGNCQSD---------DAESLLKEMLCLEQLNIIRLTSCSLCS---LC 440 (483)
Q Consensus 374 ~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~-p~~~~l~---------~~~~~~~~l~~l~~L~~L~l~~~~l~~---l~ 440 (483)
++|.+..+|. +..+++|++|++++|..... +.+..+. ........+..+++|+.|++++|.+.. +.
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLA 196 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGG
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccccc
Confidence 5555555544 55555555555555533322 2111110 000111126778888888888887644 45
Q ss_pred CCCCcccccceeeeeeee
Q 038724 441 GLPTVQCLTSRRLNLEVE 458 (483)
Q Consensus 441 ~l~~l~~l~l~~~~~~~~ 458 (483)
.++.|+.++++++.+...
T Consensus 197 ~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp GCTTCCEEECCSSCCCCC
T ss_pred CCCccceeecccCCCCCC
Confidence 667777787777766644
No 92
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=9.4e-14 Score=118.69 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=108.4
Q ss_pred CCCCcccEEEecCCccc--cccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCc-cCccccCCcCC
Q 038724 315 PSCPHLLTLFLNDNYLQ--DIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLE-LPEELKALEKL 391 (483)
Q Consensus 315 ~~~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L 391 (483)
...++|+.|++++|.+. .++.. +..+++|++|++++|.+.. + ..+..+++|++|++++|.+.. +|..+..+++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34588999999999998 56554 7899999999999998544 4 689999999999999999888 77667789999
Q ss_pred CEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc--------cCCCCCcccccceeeeeeee
Q 038724 392 KYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS--------LCGLPTVQCLTSRRLNLEVE 458 (483)
Q Consensus 392 ~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~--------l~~l~~l~~l~l~~~~~~~~ 458 (483)
++|++++|.+...| .+..+..+++|+.|++++|++.. +..+++|+.|+++.+.+...
T Consensus 98 ~~L~Ls~N~l~~~~----------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 98 THLNLSGNKLKDIS----------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CEEECBSSSCCSSG----------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CEEeccCCccCcch----------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999999976432 23568889999999999998754 45689999999988776543
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=1.3e-14 Score=133.52 Aligned_cols=145 Identities=19% Similarity=0.247 Sum_probs=121.3
Q ss_pred ccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEecc
Q 038724 295 WLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDIS 374 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 374 (483)
+.++..+++..+.++.++....+++|++|++++|.+..++. +..+++|++|++++|. +..+|. +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECC
Confidence 44455677888888888766788999999999999998873 8899999999999997 455555 9999999999999
Q ss_pred CCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc---cCCCCCcccccce
Q 038724 375 FTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS---LCGLPTVQCLTSR 451 (483)
Q Consensus 375 ~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~l~~l~~l~l~ 451 (483)
+|.+..+|.... ++|++|++++|.+... ..+..+++|+.|++++|.+.. +..+++|+.|+++
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~-------------~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRDT-------------DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLH 158 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSBS-------------GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECT
T ss_pred CCccCCcCcccc--CcccEEEccCCccCCC-------------hhhcCcccccEEECCCCcCCCChHHccCCCCCEEECC
Confidence 999999986433 9999999999986532 357889999999999998754 5677899999999
Q ss_pred eeeeeee
Q 038724 452 RLNLEVE 458 (483)
Q Consensus 452 ~~~~~~~ 458 (483)
+|.+...
T Consensus 159 ~N~i~~~ 165 (263)
T 1xeu_A 159 GNEITNT 165 (263)
T ss_dssp TSCCCBC
T ss_pred CCcCcch
Confidence 8888755
No 94
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=141.56 Aligned_cols=118 Identities=23% Similarity=0.278 Sum_probs=65.8
Q ss_pred cCccccccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCccccc
Q 038724 287 VVPSDALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISK 364 (483)
Q Consensus 287 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 364 (483)
+.+..+..+++|+.|++++|.++.+++. ..+++|++|++++|.+..+++..|..+++|++|++++|++....+..++.
T Consensus 43 ~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 122 (570)
T 2z63_A 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122 (570)
T ss_dssp ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTT
T ss_pred cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccc
Confidence 3333444555666666666666555432 34566666666666666555555666666666666666433222224556
Q ss_pred CcCCCEEeccCCCCCc--cCccccCCcCCCEEecCCCCCcCC
Q 038724 365 LVSLQHLDISFTSTLE--LPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 365 l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
+++|++|++++|.+.. +|..++++++|++|++++|.+...
T Consensus 123 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 6666666666665543 455566666666666666654433
No 95
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.48 E-value=1.6e-13 Score=144.28 Aligned_cols=172 Identities=20% Similarity=0.208 Sum_probs=104.0
Q ss_pred hhcccCccccccccceEEEEccccccccc-cC--CCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccC--cc
Q 038724 283 KLRDVVPSDALKWLGLRRMSLMNNQIKTL-LN--TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFL--TK 357 (483)
Q Consensus 283 ~l~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~ 357 (483)
.+....+..+..+++++.|++++|.++.. ++ ...+++|++|++++|.+..+++..|..+++|+.|++++|.+. +.
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence 34444444555666777777777776542 21 245677777777777776666666677777777777777543 45
Q ss_pred CCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCC--CCCCccchhhHhhhccccccccceeecc
Q 038724 358 LPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEG--NCQSDDAESLLKEMLCLEQLNIIRLTSC 434 (483)
Q Consensus 358 ~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~--~~~l~~~~~~~~~l~~l~~L~~L~l~~~ 434 (483)
.|..++.+++|++|++++|.+..+|+. +..+++|+.|++++|.+...+. +. ...+..+..+++|+.|++++|
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP-----GGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST-----TSCCCTTTTCTTCCEEECCSS
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc-----CCcchhhcCCCCCCEEECCCC
Confidence 677777788888888888887777665 6777888888888887664411 00 000112445555555555555
Q ss_pred Cccc-----cCCCCCcccccceeeeeeeee
Q 038724 435 SLCS-----LCGLPTVQCLTSRRLNLEVED 459 (483)
Q Consensus 435 ~l~~-----l~~l~~l~~l~l~~~~~~~~~ 459 (483)
.+.. +.++++|+.|++++|++...+
T Consensus 547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCCHHHcccccCcceeECCCCCCCcCC
Confidence 5432 334455555555555555433
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=9.8e-14 Score=131.17 Aligned_cols=160 Identities=16% Similarity=0.078 Sum_probs=124.9
Q ss_pred ccceEEEEccccccccccCC----CCCCcccEEEecCCccccccc----hhhhcCCCccEEEccCCccCccCCcccccCc
Q 038724 295 WLGLRRMSLMNNQIKTLLNT----PSCPHLLTLFLNDNYLQDIKN----GFFQFMPCLKVLNLSYNRFLTKLPSGISKLV 366 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~----~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 366 (483)
.++++.|++++|.+++..+. ..+++|++|++++|.+....+ ..+..+++|++|++++|.+....|..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 45699999999999876554 568999999999999886432 3345789999999999987777778999999
Q ss_pred CCCEEeccCCCCCc---cCcc--ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhh-hccccccccceeeccCcccc-
Q 038724 367 SLQHLDISFTSTLE---LPEE--LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKE-MLCLEQLNIIRLTSCSLCSL- 439 (483)
Q Consensus 367 ~L~~L~l~~~~i~~---lp~~--~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~-l~~l~~L~~L~l~~~~l~~l- 439 (483)
+|++|++++|.+.. +|.. +..+++|++|++++|.+...| ..+.. +..+++|+.|++++|.+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---------~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT---------GVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH---------HHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH---------HHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 99999999999654 4333 478999999999999865321 22222 57889999999999988553
Q ss_pred ----CCC---CCcccccceeeeeeeeecccc
Q 038724 440 ----CGL---PTVQCLTSRRLNLEVEDWHKC 463 (483)
Q Consensus 440 ----~~l---~~l~~l~l~~~~~~~~~~~~~ 463 (483)
..+ ++|+.|++++|.+...+-..+
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~ 271 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLEQVPKGLP 271 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCCSCCSCCC
T ss_pred hhhHHhccCcCcCCEEECCCCCCCchhhhhc
Confidence 344 689999999999885544333
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=1e-13 Score=138.95 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=45.2
Q ss_pred ceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCC
Q 038724 297 GLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFT 376 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 376 (483)
+++.|++.++.++.++....+++|++|++++|.+..+++ +..+++|++|++++|.+. .+|. ++.+++|++|++++|
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hcCCCCCCEEECCCC
Confidence 444444444444444433344444444444444444433 444444444444444322 2222 444444444444444
Q ss_pred CCCccCccccCCcCCCEEecCCCCCc
Q 038724 377 STLELPEELKALEKLKYLDMDDHQQV 402 (483)
Q Consensus 377 ~i~~lp~~~~~l~~L~~L~l~~n~~~ 402 (483)
.+..+|. +..+++|++|++++|.+.
T Consensus 123 ~l~~~~~-~~~l~~L~~L~l~~n~l~ 147 (466)
T 1o6v_A 123 QITDIDP-LKNLTNLNRLELSSNTIS 147 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEEEEEEEEC
T ss_pred CCCCChH-HcCCCCCCEEECCCCccC
Confidence 4444433 444444444444444433
No 98
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.47 E-value=3.2e-13 Score=141.99 Aligned_cols=178 Identities=25% Similarity=0.237 Sum_probs=135.3
Q ss_pred hhhhcccCccccccccceEEEEccccccccccC--CCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccC
Q 038724 281 LEKLRDVVPSDALKWLGLRRMSLMNNQIKTLLN--TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKL 358 (483)
Q Consensus 281 ~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 358 (483)
...+....+..+..+++|+.|++++|.++.+++ ...+++|++|++++|.+..+++..|..+++|++|++++|.+.+..
T Consensus 58 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 58 FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp SSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC
Confidence 345666667777788899999999999998886 367899999999999999888877899999999999999877777
Q ss_pred CcccccCcCCCEEeccCCCCCccCcc-c--cCCcCCCEEecCCCCCcCC-CC-CCCCc----------------------
Q 038724 359 PSGISKLVSLQHLDISFTSTLELPEE-L--KALEKLKYLDMDDHQQVME-EG-NCQSD---------------------- 411 (483)
Q Consensus 359 p~~~~~l~~L~~L~l~~~~i~~lp~~-~--~~l~~L~~L~l~~n~~~~~-p~-~~~l~---------------------- 411 (483)
|..++.+++|++|++++|.+..++.. + ..+++|+.|++++|.+... |. +..+.
T Consensus 138 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 217 (680)
T 1ziw_A 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217 (680)
T ss_dssp CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHH
T ss_pred chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHH
Confidence 88888999999999999998888764 3 3568899999999987776 43 22211
Q ss_pred ----------------cchhhHhhhccccc--cccceeeccCcc-----ccCCCCCcccccceeeeeeee
Q 038724 412 ----------------DAESLLKEMLCLEQ--LNIIRLTSCSLC-----SLCGLPTVQCLTSRRLNLEVE 458 (483)
Q Consensus 412 ----------------~~~~~~~~l~~l~~--L~~L~l~~~~l~-----~l~~l~~l~~l~l~~~~~~~~ 458 (483)
.....+..+..++. |+.|++++|.+. .+..+++|+.|++++|++...
T Consensus 218 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 01112334455544 888888888763 356677888888887777654
No 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.47 E-value=7.6e-14 Score=132.35 Aligned_cols=165 Identities=19% Similarity=0.171 Sum_probs=87.0
Q ss_pred hhhhcccCccccccccceEEEEccccccccccCCCCCCcccEEEecCCccccccch----------------hhhcCCCc
Q 038724 281 LEKLRDVVPSDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNG----------------FFQFMPCL 344 (483)
Q Consensus 281 ~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----------------~~~~l~~L 344 (483)
.+.+.+..+..+..+++|+.|++++|.++..++...+++|++|++++|.++.+++. ....+++|
T Consensus 43 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L 122 (317)
T 3o53_A 43 GNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGK 122 (317)
T ss_dssp TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSC
T ss_pred CCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCC
Confidence 34445555555556667777777777776655555666666666666666554421 00113344
Q ss_pred cEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCcc-c-cCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhcc
Q 038724 345 KVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-L-KALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLC 422 (483)
Q Consensus 345 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~-~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~ 422 (483)
++|++++|++....|..++.+++|++|++++|.+..++.. + ..+++|++|++++|.+...| ....
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------------~~~~ 189 (317)
T 3o53_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK-------------GQVV 189 (317)
T ss_dssp EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE-------------CCCC
T ss_pred CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc-------------cccc
Confidence 4444444443333333444445555555555554443222 2 23445555555555433221 1223
Q ss_pred ccccccceeeccCccc----cCCCCCcccccceeeeeeee
Q 038724 423 LEQLNIIRLTSCSLCS----LCGLPTVQCLTSRRLNLEVE 458 (483)
Q Consensus 423 l~~L~~L~l~~~~l~~----l~~l~~l~~l~l~~~~~~~~ 458 (483)
+++|+.|++++|.+.. +..+++|+.|++++|.+...
T Consensus 190 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l 229 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI 229 (317)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE
T ss_pred cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch
Confidence 6677777777776633 44566677777777666643
No 100
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=148.48 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=111.9
Q ss_pred cccceEEEEccccccccccCC--CCCCcccEEEecCC-ccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCE
Q 038724 294 KWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDN-YLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQH 370 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 370 (483)
..++++.|++++|.++.+.+. ..+++|++|+|++| ....+++..|..+++|++|+|++|++.+..|..++.+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 346788899999988877553 57888999999888 444566677888889999999988877777888888999999
Q ss_pred EeccCCCCCc-cCcc--ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc-----CCC
Q 038724 371 LDISFTSTLE-LPEE--LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL-----CGL 442 (483)
Q Consensus 371 L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-----~~l 442 (483)
|++++|.+.. +|.. +.++++|++|++++|.+...+ .+..++.+++|+.|++++|.+..+ ..+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~----------~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY----------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC----------CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccc----------cchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999888665 5554 788889999999988866441 123466777777777777765332 222
Q ss_pred --CCcccccceeeeee
Q 038724 443 --PTVQCLTSRRLNLE 456 (483)
Q Consensus 443 --~~l~~l~l~~~~~~ 456 (483)
++|+.|+++.+.+.
T Consensus 172 ~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLY 187 (844)
T ss_dssp HHCSSCCCEECCSBSC
T ss_pred cCCccceEECCCCccc
Confidence 55666666655554
No 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=1.3e-13 Score=115.34 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=101.4
Q ss_pred CCCcccEEEecCCccc--cccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCc-cCccccCCcCCC
Q 038724 316 SCPHLLTLFLNDNYLQ--DIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLE-LPEELKALEKLK 392 (483)
Q Consensus 316 ~~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~ 392 (483)
..++|+.|++++|.+. .++. .+..+++|++|++++|.+... ..++.+++|++|++++|.+.. +|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 4578999999999998 4554 578999999999999975444 679999999999999999888 777778899999
Q ss_pred EEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccccC--------CCCCcccccce
Q 038724 393 YLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSLC--------GLPTVQCLTSR 451 (483)
Q Consensus 393 ~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~--------~l~~l~~l~l~ 451 (483)
+|++++|.+.. ...+..+..+++|+.|++++|++..+. .+++|+.|+++
T Consensus 92 ~L~ls~N~i~~----------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKD----------LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCS----------HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCC----------hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999999652 224477899999999999999885543 46777777664
No 102
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=148.63 Aligned_cols=148 Identities=16% Similarity=0.144 Sum_probs=126.4
Q ss_pred EEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccC-CcccccCcCCCEEeccCCC
Q 038724 299 RRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKL-PSGISKLVSLQHLDISFTS 377 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~~~ 377 (483)
+..+.+++.++.+|. ..+++++|+|++|.++.+.+..|..+++|++|++++|.....+ |..++++++|++|++++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 357778889999987 5689999999999999998888999999999999999766666 7889999999999999999
Q ss_pred CCcc-CccccCCcCCCEEecCCCCCcCC-CCCCCCccchhhHhhhccccccccceeeccCcc------ccCCCCCccccc
Q 038724 378 TLEL-PEELKALEKLKYLDMDDHQQVME-EGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLC------SLCGLPTVQCLT 449 (483)
Q Consensus 378 i~~l-p~~~~~l~~L~~L~l~~n~~~~~-p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~------~l~~l~~l~~l~ 449 (483)
+..+ |..+.++++|++|+|++|.+... |. ...+..+++|+.|++++|.+. .+.++++|+.|+
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLK----------DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCST----------TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCccccc----------CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 8887 66799999999999999987642 21 113788999999999999873 367889999999
Q ss_pred ceeeeeeee
Q 038724 450 SRRLNLEVE 458 (483)
Q Consensus 450 l~~~~~~~~ 458 (483)
++.|.+...
T Consensus 155 Ls~N~i~~~ 163 (844)
T 3j0a_A 155 FSSNQIFLV 163 (844)
T ss_dssp EESSCCCCC
T ss_pred CCCCcCCee
Confidence 998887653
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=8.6e-14 Score=139.86 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=101.5
Q ss_pred cceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccc-cCcCCCEEecc
Q 038724 296 LGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGIS-KLVSLQHLDIS 374 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~ 374 (483)
++|+.|++++|.++.+++ ..+++|+.|++++|.+..+++..+..+++|++|++++|.+.+..|..+. .+++|++|+++
T Consensus 99 ~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp TTCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CCcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 445555666665555544 2467788888888888877776677788888888888877666676665 67888888888
Q ss_pred CCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc----cCCCCCcccccc
Q 038724 375 FTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS----LCGLPTVQCLTS 450 (483)
Q Consensus 375 ~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~----l~~l~~l~~l~l 450 (483)
+|.+..+|. ...+++|+.|+|++|.+..+ +..+..+++|+.|++++|.+.. +..+++|+.|++
T Consensus 178 ~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~------------~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 178 YNFIYDVKG-QVVFAKLKTLDLSSNKLAFM------------GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (487)
T ss_dssp TSCCCEEEC-CCCCTTCCEEECCSSCCCEE------------CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred CCccccccc-cccCCCCCEEECCCCCCCCC------------CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence 888777754 34578888888888875533 2335667777777777777644 344566666666
Q ss_pred eeeeee
Q 038724 451 RRLNLE 456 (483)
Q Consensus 451 ~~~~~~ 456 (483)
++|.+.
T Consensus 245 ~~N~l~ 250 (487)
T 3oja_A 245 RGNGFH 250 (487)
T ss_dssp TTCCBC
T ss_pred CCCCCc
Confidence 665554
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=8.7e-14 Score=119.88 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=108.6
Q ss_pred cccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCccc-c
Q 038724 308 IKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEEL-K 386 (483)
Q Consensus 308 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~-~ 386 (483)
+...+....+.+|+.|++++|.++.++ ......++|++|++++|.+.+ + ..++.+++|++|++++|.+..+|+.+ .
T Consensus 9 i~~~~~~~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 9 IEQAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp HHTSCEEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred HHHHHhcCCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhh
Confidence 333334456889999999999999874 334444599999999997554 4 57999999999999999999999775 8
Q ss_pred CCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc--------cCCCCCcccccceeeeee
Q 038724 387 ALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS--------LCGLPTVQCLTSRRLNLE 456 (483)
Q Consensus 387 ~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~--------l~~l~~l~~l~l~~~~~~ 456 (483)
.+++|++|++++|.+...|. ...+..+++|+.|++++|++.. +..+++|+.|+++.+...
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~----------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGD----------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGG----------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCEEECCCCcCCcchh----------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999999653321 2367889999999999999854 455788999998877654
No 105
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.45 E-value=2.5e-13 Score=138.13 Aligned_cols=142 Identities=22% Similarity=0.163 Sum_probs=82.8
Q ss_pred CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCc--cCCcccccCcCCCEEeccCCCCCc-cCcc-ccCCcC
Q 038724 315 PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLT--KLPSGISKLVSLQHLDISFTSTLE-LPEE-LKALEK 390 (483)
Q Consensus 315 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~~~i~~-lp~~-~~~l~~ 390 (483)
..+++|++|++++|.+....+..+..+++|++|++++|++.+ .+|..++.+++|++|++++|.+.. +|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 355666666666666665444445666666666666665443 344556666666666666666555 6554 555666
Q ss_pred CCEEecCCCCCcCC-CC-C-CCCc-------cchhhHhhhccccccccceeeccCcccc-----CCCCCcccccceeeee
Q 038724 391 LKYLDMDDHQQVME-EG-N-CQSD-------DAESLLKEMLCLEQLNIIRLTSCSLCSL-----CGLPTVQCLTSRRLNL 455 (483)
Q Consensus 391 L~~L~l~~n~~~~~-p~-~-~~l~-------~~~~~~~~l~~l~~L~~L~l~~~~l~~l-----~~l~~l~~l~l~~~~~ 455 (483)
|+.|++++|.+... |. + ..++ .....|..+..+++|+.|++++|++..+ ..+++|+.|++++|.+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 66666666665433 22 1 1111 1124455566788888888888877543 4455666666666554
Q ss_pred e
Q 038724 456 E 456 (483)
Q Consensus 456 ~ 456 (483)
.
T Consensus 481 ~ 481 (520)
T 2z7x_B 481 D 481 (520)
T ss_dssp C
T ss_pred c
Confidence 3
No 106
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=4.9e-13 Score=142.16 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=59.5
Q ss_pred CcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccC--------cCCCEEeccCCCCCccCcccc--C
Q 038724 318 PHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKL--------VSLQHLDISFTSTLELPEELK--A 387 (483)
Q Consensus 318 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l--------~~L~~L~l~~~~i~~lp~~~~--~ 387 (483)
++|+.|++++|.+..++...+..+++|+.|+|++|.+ ..+|..+... ++|++|++++|.+..+|..+. .
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~ 751 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTT
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCCCCCccchHHhhhcc
Confidence 3666777777776666666666677777777777753 3666554432 277777777777777777765 7
Q ss_pred CcCCCEEecCCCCCcCCC
Q 038724 388 LEKLKYLDMDDHQQVMEE 405 (483)
Q Consensus 388 l~~L~~L~l~~n~~~~~p 405 (483)
+++|+.|+|++|.+..+|
T Consensus 752 l~~L~~L~Ls~N~L~~lp 769 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFP 769 (876)
T ss_dssp CTTCCEEECCSSCCSSCC
T ss_pred CCCcCEEEeCCCCCCccc
Confidence 777777777777766544
No 107
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.43 E-value=8.6e-13 Score=132.14 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=88.4
Q ss_pred cccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 294 KWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
.+++|+.|++++|.++.++....+++|++|++++|.+...++ +..+++|++|++++|.+. .+|. +..+++|++|++
T Consensus 219 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L 294 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-LAGLTALTNLEL 294 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEEC
T ss_pred ccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc-ccCCCccCeEEc
Confidence 344555555555555554444445555555555555554443 445555555555555422 2222 445555555555
Q ss_pred cCCCCCccCccccCCcCCCEEecCCCCCcCCCCCC---CCc------cchhhHhhhccccccccceeeccCccc---cCC
Q 038724 374 SFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNC---QSD------DAESLLKEMLCLEQLNIIRLTSCSLCS---LCG 441 (483)
Q Consensus 374 ~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~---~l~------~~~~~~~~l~~l~~L~~L~l~~~~l~~---l~~ 441 (483)
++|.+..+|. +..+++|+.|++++|.+...+.+. .++ ........+..+++|+.|++++|++.. +..
T Consensus 295 ~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 373 (466)
T 1o6v_A 295 NENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLAN 373 (466)
T ss_dssp CSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTT
T ss_pred CCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccchhhc
Confidence 5555555443 445555555555555544431111 111 001112457788899999999998743 567
Q ss_pred CCCcccccceeeeeeeeec
Q 038724 442 LPTVQCLTSRRLNLEVEDW 460 (483)
Q Consensus 442 l~~l~~l~l~~~~~~~~~~ 460 (483)
+++|+.|++++|.+...+.
T Consensus 374 l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 374 LTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp CTTCCEEECCCEEEECCCB
T ss_pred CCCCCEEeccCCcccCCch
Confidence 7888888888888776443
No 108
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.43 E-value=9.5e-13 Score=131.07 Aligned_cols=150 Identities=21% Similarity=0.193 Sum_probs=84.8
Q ss_pred cccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
+..+++|+.|++++|.++.++ ...+++|++|++++|.++.++ ++.+++|++|++++|+..+.+ .++.+++|++|
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred cCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 334556666666666666553 455666666666666665542 455566666666666444444 25566666666
Q ss_pred eccCCCCCccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc--cCCCCCccccc
Q 038724 372 DISFTSTLELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS--LCGLPTVQCLT 449 (483)
Q Consensus 372 ~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~--l~~l~~l~~l~ 449 (483)
++++|.+..+| +..+++|+.|++++|.+... .+..+++|+.|++++|.+.. +..+++|+.|+
T Consensus 176 ~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~--------------~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~ 239 (457)
T 3bz5_A 176 DCSFNKITELD--VSQNKLLNRLNCDTNNITKL--------------DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFD 239 (457)
T ss_dssp ECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC--------------CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEE
T ss_pred ECCCCccceec--cccCCCCCEEECcCCcCCee--------------ccccCCCCCEEECcCCcccccCccccCCCCEEE
Confidence 66666666665 55666666666666664432 24455556666666655433 33445555555
Q ss_pred ceeeeeeeeecccc
Q 038724 450 SRRLNLEVEDWHKC 463 (483)
Q Consensus 450 l~~~~~~~~~~~~~ 463 (483)
+++|.+...+...+
T Consensus 240 l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 240 CSVNPLTELDVSTL 253 (457)
T ss_dssp CCSSCCSCCCCTTC
T ss_pred eeCCcCCCcCHHHC
Confidence 55555554443333
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=1e-13 Score=141.40 Aligned_cols=107 Identities=21% Similarity=0.303 Sum_probs=93.9
Q ss_pred cccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCccccCCcCCCEEecCC
Q 038724 319 HLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEELKALEKLKYLDMDD 398 (483)
Q Consensus 319 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 398 (483)
.|+.|+|++|.++.+|. +..+++|++|+|++|. +..+|..++.+++|++|++++|.+..+| .++.+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 58999999999999875 8899999999999997 5588999999999999999999999998 899999999999999
Q ss_pred CCCcCCCCCCCCccchhhHhhhccccccccceeeccCcccc
Q 038724 399 HQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSL 439 (483)
Q Consensus 399 n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l 439 (483)
|.+... ..|..+..+++|+.|++++|++..+
T Consensus 518 N~l~~~----------~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 518 NRLQQS----------AAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SCCCSS----------STTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCC----------CCcHHHhcCCCCCEEEecCCcCCCC
Confidence 986532 1166788999999999999998654
No 110
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=1.1e-12 Score=126.61 Aligned_cols=156 Identities=16% Similarity=0.207 Sum_probs=103.2
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC-----c-------------
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE-----L------------- 62 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~-----~------------- 62 (483)
|||++++++|.+ +.. +++.|+|++|+|||+|+++++++. .. . .+|+.+... .
T Consensus 16 ~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (357)
T 2fna_A 16 FDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL--P-YIYLDLRKFEERNYISYKDFLLELQKEI 85 (357)
T ss_dssp CCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC--C-EEEEEGGGGTTCSCCCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC--C-EEEEEchhhccccCCCHHHHHHHHHHHH
Confidence 799999999999 775 599999999999999999999876 22 2 467765431 0
Q ss_pred -------------------------------------CccchhHHhhhcC-CcEEEEEcCCCCcc-----ccccccCCCC
Q 038724 63 -------------------------------------KLETSQDDMILST-KKFLLLLDDLWETI-----DLSKIGVPLP 99 (483)
Q Consensus 63 -------------------------------------~~~~~~~~i~l~~-~~~LlvlDdv~~~~-----~~~~l~~~~~ 99 (483)
...++...+.-.. ++++|||||++... ++..+...+.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~ 165 (357)
T 2fna_A 86 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAY 165 (357)
T ss_dssp HHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHH
T ss_pred HHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHH
Confidence 0111222221111 49999999996532 2222211111
Q ss_pred CCCCCCEEEEecCChhh-------------------h---hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcC
Q 038724 100 SQKIVSKVVFTTHSEEV-------------------C---VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCG 157 (483)
Q Consensus 100 ~~~~gs~ilvTtR~~~~-------------------~---l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~ 157 (483)
+...+.++++|+|.... . +.+|+.+++.+++......... ... + ...|++.|+
T Consensus 166 ~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~-~~~i~~~t~ 240 (357)
T 2fna_A 166 DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFK---D-YEVVYEKIG 240 (357)
T ss_dssp HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCC---C-HHHHHHHHC
T ss_pred HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCC---c-HHHHHHHhC
Confidence 11135788888886421 0 7899999999999875532110 111 1 288999999
Q ss_pred CchHHHHHHHHHhc
Q 038724 158 GLPLALTIVGRAMA 171 (483)
Q Consensus 158 g~Plal~~~~~~l~ 171 (483)
|+|+++..++..+.
T Consensus 241 G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 241 GIPGWLTYFGFIYL 254 (357)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc
Confidence 99999999887664
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=2.8e-13 Score=142.52 Aligned_cols=116 Identities=23% Similarity=0.279 Sum_probs=98.3
Q ss_pred cCccccccccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccC
Q 038724 287 VVPSDALKWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKL 365 (483)
Q Consensus 287 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 365 (483)
..++.+..+..|+.|++++|.+..++.. ..+++|++|+|++|.++.+|.. |..+++|++|+|++|.+ ..+|..++.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRL-TSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCC-SSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcC-CccChhhcCC
Confidence 3455666788899999999999988754 5789999999999999977755 78999999999999975 4889999999
Q ss_pred cCCCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCC
Q 038724 366 VSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 366 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
++|++|+|++|.++.+|..|+.|++|++|+|++|.+...
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 999999999999999999999999999999999997755
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.39 E-value=1.9e-12 Score=133.08 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=26.8
Q ss_pred cceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCc
Q 038724 296 LGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNR 353 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 353 (483)
++++.|++++|.++.++. .+++|++|+|++|.++.++. .+++|++|++++|+
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNP 112 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCc
Confidence 345555555555555544 34555555555555554443 33445555555553
No 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.39 E-value=2.3e-12 Score=132.41 Aligned_cols=97 Identities=26% Similarity=0.224 Sum_probs=47.0
Q ss_pred ccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEecc
Q 038724 295 WLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDIS 374 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 374 (483)
+++|+.|++++|.++.++. .+++|+.|++++|.++.++.. +++|++|++++|+ +..+|..+ .+|+.|+++
T Consensus 100 l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~-l~~l~~~~---~~L~~L~L~ 169 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQ-LASLPALP---SELCKLWAY 169 (622)
T ss_dssp CTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSC-CSCCCCCC---TTCCEEECC
T ss_pred CCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCc-CCCcCCcc---CCCCEEECC
Confidence 3455555555555555443 445555555555555554442 3556666666664 33333322 233333333
Q ss_pred CCCCCccCccccCCcCCCEEecCCCCCcCC
Q 038724 375 FTSTLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 375 ~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
+|.+..+| ..+++|+.|++++|.+..+
T Consensus 170 ~N~l~~l~---~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 170 NNQLTSLP---MLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp SSCCSCCC---CCCTTCCEEECCSSCCSCC
T ss_pred CCCCCCCc---ccCCCCcEEECCCCCCCCC
Confidence 33333333 1224555555555555544
No 114
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.39 E-value=8.9e-13 Score=135.31 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=97.0
Q ss_pred ccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccc--hhhhcCCCccEEEccCCccCccCCc-ccccCcC
Q 038724 293 LKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKN--GFFQFMPCLKVLNLSYNRFLTKLPS-GISKLVS 367 (483)
Q Consensus 293 ~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~l~~ 367 (483)
..+++++.|++++|.++...+. ..+++|++|++++|.++.++. ..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 3566777888888877764332 567788888888887776542 3467777888888888876554554 3667777
Q ss_pred CCEEeccCCCCC-ccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc-----cCC
Q 038724 368 LQHLDISFTSTL-ELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS-----LCG 441 (483)
Q Consensus 368 L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~-----l~~ 441 (483)
|++|++++|.+. .+|..+. ++|+.|++++|++..+| ..+..+++|+.|++++|.+.. +..
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip------------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP------------KDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC------------TTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC------------hhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 888888777753 3333332 57777888777755332 234467777777777777644 344
Q ss_pred CCCcccccceeeee
Q 038724 442 LPTVQCLTSRRLNL 455 (483)
Q Consensus 442 l~~l~~l~l~~~~~ 455 (483)
+++|+.|++++|.+
T Consensus 496 l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 496 LTSLQYIWLHDNPW 509 (562)
T ss_dssp CTTCCCEECCSCCB
T ss_pred CCCCCEEEecCCCc
Confidence 55566666555544
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=1.5e-13 Score=131.42 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=114.2
Q ss_pred cccceEEEEcccccccc--ccC-CCCCCcccEEEecCCccccccchhhhcCCCccEEEccCC-ccCc-cCCcccccCcCC
Q 038724 294 KWLGLRRMSLMNNQIKT--LLN-TPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYN-RFLT-KLPSGISKLVSL 368 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~--~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~-~~p~~~~~l~~L 368 (483)
.+++++.|++++|.++. ++. ...+++|++|++++|.+....+..+..+++|++|++++| .+.+ .+|..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 56788888888888764 222 256788888888888877655556777888888888888 3333 356667788888
Q ss_pred CEEeccCC-CCCc--cCccccCCc-CCCEEecCCCC--CcCCCCCCCCccchhhHhhhccccccccceeeccC-c-----
Q 038724 369 QHLDISFT-STLE--LPEELKALE-KLKYLDMDDHQ--QVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCS-L----- 436 (483)
Q Consensus 369 ~~L~l~~~-~i~~--lp~~~~~l~-~L~~L~l~~n~--~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~-l----- 436 (483)
++|++++| .+.. +|..+..++ +|++|++++|. +. ....+..+..+++|+.|++++|. +
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~----------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ----------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC----------HHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC----------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence 88888888 6765 566678888 88888888884 21 24456677889999999999998 4
Q ss_pred cccCCCCCcccccceeee
Q 038724 437 CSLCGLPTVQCLTSRRLN 454 (483)
Q Consensus 437 ~~l~~l~~l~~l~l~~~~ 454 (483)
..+..+++|+.|++++|.
T Consensus 241 ~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGGGCTTCCEEECTTCT
T ss_pred HHHhCCCCCCEeeCCCCC
Confidence 346778899999998873
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=1.7e-12 Score=131.88 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=52.6
Q ss_pred cceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccC
Q 038724 296 LGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISF 375 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 375 (483)
++++.|++++|.++.++ ..+++|++|++++|.++.++. +.. +|++|++++|.+. .+|. .+++|++|++++
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLT-MLPE---LPALLEYINADN 149 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCC-CCCC---cCccccEEeCCC
Confidence 44666666666666555 445566666666666655444 222 5666666666432 2444 355556666665
Q ss_pred CCCCccCccccCCcCCCEEecCCCCCcCC
Q 038724 376 TSTLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 376 ~~i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
|.+..+|. .+++|+.|++++|.+..+
T Consensus 150 N~l~~lp~---~l~~L~~L~Ls~N~L~~l 175 (571)
T 3cvr_A 150 NQLTMLPE---LPTSLEVLSVRNNQLTFL 175 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCC
T ss_pred CccCcCCC---cCCCcCEEECCCCCCCCc
Confidence 55555554 345555555555554433
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=9.5e-13 Score=134.23 Aligned_cols=123 Identities=21% Similarity=0.260 Sum_probs=104.7
Q ss_pred ceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCC
Q 038724 297 GLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFT 376 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 376 (483)
.++.|++++|.++.+|....+++|+.|+|++|.++.+|.. ++.+++|++|+|++|.+. .+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCC
Confidence 5889999999999998878899999999999999988764 899999999999999754 578 8999999999999999
Q ss_pred CCCcc--CccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccce
Q 038724 377 STLEL--PEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIR 430 (483)
Q Consensus 377 ~i~~l--p~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~ 430 (483)
.+..+ |..++.+++|+.|+|++|.+...|.. ...-+..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~--------~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI--------QERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC--------TTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH--------HHHHHHHCcccCccC
Confidence 99998 88899999999999999998766431 112234467777765
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.7e-12 Score=113.39 Aligned_cols=107 Identities=25% Similarity=0.294 Sum_probs=97.5
Q ss_pred cceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEecc
Q 038724 296 LGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDIS 374 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 374 (483)
.+++.|++++|.++.++.. ..+++|+.|+|++|.++.+++..|..+++|++|+|++|++....|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5789999999999988743 578999999999999999999889999999999999998777777789999999999999
Q ss_pred CCCCCccCcc-ccCCcCCCEEecCCCCCc
Q 038724 375 FTSTLELPEE-LKALEKLKYLDMDDHQQV 402 (483)
Q Consensus 375 ~~~i~~lp~~-~~~l~~L~~L~l~~n~~~ 402 (483)
+|.+..+|.. +..+++|+.|++++|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999999986 889999999999999865
No 119
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=2.8e-12 Score=110.01 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=80.4
Q ss_pred EEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCC
Q 038724 299 RRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTST 378 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i 378 (483)
+.+++++|.++.+|... .++|+.|+|++|.++.+++..|..+++|++|+|++|++.+..+..+..+++|++|++++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 46788888887776532 37888888888888888777788888888888888864443333457888888888888888
Q ss_pred CccCcc-ccCCcCCCEEecCCCCCcCC
Q 038724 379 LELPEE-LKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 379 ~~lp~~-~~~l~~L~~L~l~~n~~~~~ 404 (483)
..+|.. +..+++|++|+|++|.+...
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccc
Confidence 888876 77888888888888876544
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=1.5e-12 Score=113.78 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=96.8
Q ss_pred ceEEEEccccccccccCC---CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEec
Q 038724 297 GLRRMSLMNNQIKTLLNT---PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDI 373 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 373 (483)
.++.|++++|.++.+++. ..+++|++|+|++|.++.+++..|..+++|++|+|++|++.+..|..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788999999999988763 57899999999999999998888999999999999999877777777999999999999
Q ss_pred cCCCCCcc-CccccCCcCCCEEecCCCCCcC
Q 038724 374 SFTSTLEL-PEELKALEKLKYLDMDDHQQVM 403 (483)
Q Consensus 374 ~~~~i~~l-p~~~~~l~~L~~L~l~~n~~~~ 403 (483)
++|.+..+ |..+..+++|++|++++|.+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99998877 5568999999999999999764
No 121
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=2.8e-12 Score=109.61 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=86.0
Q ss_pred eEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCC
Q 038724 298 LRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTS 377 (483)
Q Consensus 298 l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 377 (483)
.+.+++++|.++.+|... .++|++|+|++|.++.+++..|..+++|++|+|++|++.+..|..+..+++|++|++++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 356888888888877543 4788999999999988888878889999999999997555444556888999999999999
Q ss_pred CCccCcc-ccCCcCCCEEecCCCCCcCC
Q 038724 378 TLELPEE-LKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 378 i~~lp~~-~~~l~~L~~L~l~~n~~~~~ 404 (483)
+..+|.. +..+++|++|+|++|.+...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8888875 78889999999999886544
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.36 E-value=2.1e-13 Score=130.40 Aligned_cols=165 Identities=18% Similarity=0.243 Sum_probs=126.0
Q ss_pred CccccccccceEEEEccccccccccC--CCCCCcccEEEecCC-ccccc-cchhhhcCCCccEEEccCC-ccCcc-CCcc
Q 038724 288 VPSDALKWLGLRRMSLMNNQIKTLLN--TPSCPHLLTLFLNDN-YLQDI-KNGFFQFMPCLKVLNLSYN-RFLTK-LPSG 361 (483)
Q Consensus 288 ~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~p~~ 361 (483)
++..+..+++|+.|++++|.++...+ ...+++|++|++++| .++.. .+..+..+++|++|++++| .+... +|..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 44455678899999999998774322 256899999999999 67642 3445788999999999999 65543 5677
Q ss_pred cccCc-CCCEEeccCCC--C--CccCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccC-
Q 038724 362 ISKLV-SLQHLDISFTS--T--LELPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCS- 435 (483)
Q Consensus 362 ~~~l~-~L~~L~l~~~~--i--~~lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~- 435 (483)
+..++ +|++|++++|. + ..+|..+..+++|++|++++|... ....+..+..+++|+.|++++|.
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l----------~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML----------KNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC----------CGGGGGGGGGCTTCCEEECTTCTT
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC----------CHHHHHHHhCCCCCCEeeCCCCCC
Confidence 88899 99999999994 3 557777888999999999999832 24456678889999999999994
Q ss_pred c-----cccCCCCCcccccceeeeeeeeecccc
Q 038724 436 L-----CSLCGLPTVQCLTSRRLNLEVEDWHKC 463 (483)
Q Consensus 436 l-----~~l~~l~~l~~l~l~~~~~~~~~~~~~ 463 (483)
+ ..+..+++|+.|+++++ +....+...
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH
Confidence 3 24677899999999877 544444433
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=4.8e-12 Score=128.49 Aligned_cols=148 Identities=23% Similarity=0.314 Sum_probs=109.5
Q ss_pred ceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCC
Q 038724 297 GLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFT 376 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 376 (483)
+++.|++++|.++++|.. .+++|++|+|++|.++.+| ..+++|++|++++|++.+ +|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~-l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDN-LPPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSC-CCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHh-HcCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 688999999999997764 3589999999999999887 347899999999997554 887 665 9999999999
Q ss_pred CCCccCccccCCcCCCEEecCCCCCcCCCC-CCCCc-------cchhhHhhhccccccccceeeccCccccCCCC-Cc--
Q 038724 377 STLELPEELKALEKLKYLDMDDHQQVMEEG-NCQSD-------DAESLLKEMLCLEQLNIIRLTSCSLCSLCGLP-TV-- 445 (483)
Q Consensus 377 ~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~-~~~l~-------~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~l~-~l-- 445 (483)
.+..+|. .+++|+.|++++|.+..+|. ...+. ....+|. +. ++|+.|++++|.+..+..++ +|
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~ 204 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPAVPVRNHH 204 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCCCC-----
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhhHHHhhhc
Confidence 9999998 68999999999999887654 22222 1111222 33 67777777777765544332 44
Q ss_pred -----ccccceeeeeeeee
Q 038724 446 -----QCLTSRRLNLEVED 459 (483)
Q Consensus 446 -----~~l~l~~~~~~~~~ 459 (483)
+.|++++|.+...+
T Consensus 205 ~~~~L~~L~Ls~N~l~~lp 223 (571)
T 3cvr_A 205 SEETEIFFRCRENRITHIP 223 (571)
T ss_dssp ---CCEEEECCSSCCCCCC
T ss_pred ccccceEEecCCCcceecC
Confidence 66677766666443
No 124
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.36 E-value=4.1e-12 Score=115.45 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=109.4
Q ss_pred CCChhHHHHHHHHHhcCC-eEEEEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKD-VGIIGLFGTGGVGKTTILKQINNRFCSERP------------------GFDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~-~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~------------------~f~~~~~v~~~~~ 61 (483)
|||++.++.+.+++..+. .+.+.|+|++|+||||+|+++++....... .+.....+.....
T Consensus 26 ~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (250)
T 1njg_A 26 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR 105 (250)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCG
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCccc
Confidence 699999999999998764 357999999999999999999887621110 0111222322221
Q ss_pred cCcc---chhHHh---hhcCCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCChhhh------------hccC
Q 038724 62 LKLE---TSQDDM---ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCF 121 (483)
Q Consensus 62 ~~~~---~~~~~i---~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L 121 (483)
.... .+...+ ...+++.+||+||++.. ..+..+...+.....+..+|+||+..... ++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l 185 (250)
T 1njg_A 106 TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 185 (250)
T ss_dssp GGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred ccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCC
Confidence 1111 111111 24567899999999753 33444443333334467888887655322 8899
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHh
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAM 170 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l 170 (483)
+.++..+++...+.... ..-..+..+.|++.|+|+|..+..+...+
T Consensus 186 ~~~e~~~~l~~~~~~~~---~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 186 DVEQIRHQLEHILNEEH---IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHHHHHHHHHHHTT---CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999988774332 12234668899999999999987766543
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=9.6e-13 Score=138.40 Aligned_cols=109 Identities=27% Similarity=0.255 Sum_probs=96.0
Q ss_pred CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCccccCCcCCCEE
Q 038724 315 PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEELKALEKLKYL 394 (483)
Q Consensus 315 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 394 (483)
..+++|+.|+|++|.+..+++..+ .+++|++|+|++|.+ ..+|..++.+++|++|+|++|.+..+|..++.|++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 467899999999999998888744 899999999999975 489999999999999999999999999999999999999
Q ss_pred ecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcc
Q 038724 395 DMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLC 437 (483)
Q Consensus 395 ~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~ 437 (483)
+|++|.+..+ |..++.|++|+.|+|++|++.
T Consensus 299 ~L~~N~l~~l------------p~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 299 YFFDNMVTTL------------PWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp ECCSSCCCCC------------CSSTTSCTTCCCEECTTSCCC
T ss_pred ECCCCCCCcc------------ChhhhcCCCccEEeCCCCccC
Confidence 9999986543 345778889999999998864
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=5e-12 Score=108.89 Aligned_cols=110 Identities=20% Similarity=0.282 Sum_probs=97.3
Q ss_pred ccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 295 WLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
.++++.|++++|.++.+++. ..+++|++|++++|.++.+++..|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 35789999999999988764 5789999999999999999998889999999999999986655555678999999999
Q ss_pred ccCCCCCccCcc-ccCCcCCCEEecCCCCCcCC
Q 038724 373 ISFTSTLELPEE-LKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 373 l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~ 404 (483)
+++|.+..+|.. +..+++|++|++++|.+...
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 999999999987 57899999999999997644
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.33 E-value=1e-11 Score=123.56 Aligned_cols=151 Identities=26% Similarity=0.294 Sum_probs=80.5
Q ss_pred cceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccC
Q 038724 296 LGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISF 375 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 375 (483)
.+++.|++++|.++.++... ++|++|++++|.++.++ . +..+++|++|++++|++ ..+|..+ .+|++|++++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N~l-~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNNSL-KKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSCC-SCCCCCC---TTCCEEECCS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCCcC-cccCCCc---ccccEEECcC
Confidence 44555666666555544321 46666666666666554 2 56666666666666643 3344332 3566666666
Q ss_pred CCCCccCccccCCcCCCEEecCCCCCcCCCC-CCCCc-------cchhhHhhhccccccccceeeccCccccCC-CCCcc
Q 038724 376 TSTLELPEELKALEKLKYLDMDDHQQVMEEG-NCQSD-------DAESLLKEMLCLEQLNIIRLTSCSLCSLCG-LPTVQ 446 (483)
Q Consensus 376 ~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~-~~~l~-------~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-l~~l~ 446 (483)
|.+..+| .++.+++|++|++++|.+...|. ...++ .....+ .+..+++|+.|++++|.+..+.. +++|+
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~ 260 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLE 260 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCC
T ss_pred CcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccccccccC
Confidence 6666555 45666666666666666555433 11121 011222 35566677777777766654422 24555
Q ss_pred cccceeeeee
Q 038724 447 CLTSRRLNLE 456 (483)
Q Consensus 447 ~l~l~~~~~~ 456 (483)
.|++++|.+.
T Consensus 261 ~L~l~~N~l~ 270 (454)
T 1jl5_A 261 ALNVRDNYLT 270 (454)
T ss_dssp EEECCSSCCS
T ss_pred EEECCCCccc
Confidence 5555554444
No 128
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.33 E-value=3.1e-12 Score=122.95 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=105.2
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc------C-----------
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL------K----------- 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~------~----------- 63 (483)
|||++++++|.+++..+ +++.|+|++|+|||+|+++++++. . .+|+++.... +
T Consensus 15 ~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (350)
T 2qen_A 15 FDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKELQST 84 (350)
T ss_dssp CSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHHHHH
Confidence 79999999999999875 699999999999999999999865 1 5677654321 1
Q ss_pred ----------------------------ccchhHHh--hhc-CCcEEEEEcCCCCccc---------cccccCCCCCCCC
Q 038724 64 ----------------------------LETSQDDM--ILS-TKKFLLLLDDLWETID---------LSKIGVPLPSQKI 103 (483)
Q Consensus 64 ----------------------------~~~~~~~i--~l~-~~~~LlvlDdv~~~~~---------~~~l~~~~~~~~~ 103 (483)
..++...+ ... .++++|||||++.... +..+.... ....
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~-~~~~ 163 (350)
T 2qen_A 85 ISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY-DSLP 163 (350)
T ss_dssp SCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH-HHCT
T ss_pred HHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH-HhcC
Confidence 01111111 111 2389999999976432 11111111 1113
Q ss_pred CCEEEEecCChhh------------------h----hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH
Q 038724 104 VSKVVFTTHSEEV------------------C----VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL 161 (483)
Q Consensus 104 gs~ilvTtR~~~~------------------~----l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 161 (483)
+.++++|++.... . +.+|+.+++.+++......... .-..+.++.+++.|+|+|+
T Consensus 164 ~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 164 NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DVPENEIEEAVELLDGIPG 240 (350)
T ss_dssp TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHHTTCHH
T ss_pred CeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHH
Confidence 5788888765321 0 7899999999999876533221 1234568899999999999
Q ss_pred HHHHHHHHh
Q 038724 162 ALTIVGRAM 170 (483)
Q Consensus 162 al~~~~~~l 170 (483)
++..++..+
T Consensus 241 ~l~~~~~~~ 249 (350)
T 2qen_A 241 WLVVFGVEY 249 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.33 E-value=9.1e-12 Score=123.86 Aligned_cols=100 Identities=22% Similarity=0.289 Sum_probs=64.4
Q ss_pred cceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccC
Q 038724 296 LGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISF 375 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 375 (483)
++++.|++++|.+++++. .+++|++|++++|.+..++.. .++|++|++++|.+. .+| .++.+++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCC
Confidence 456666666666666543 236677777777766655431 256777777777543 466 477777777777777
Q ss_pred CCCCccCccccCCcCCCEEecCCCCCcCCCC
Q 038724 376 TSTLELPEELKALEKLKYLDMDDHQQVMEEG 406 (483)
Q Consensus 376 ~~i~~lp~~~~~l~~L~~L~l~~n~~~~~p~ 406 (483)
|.+..+|..+ .+|++|++++|.+..+|.
T Consensus 163 N~l~~lp~~~---~~L~~L~L~~n~l~~l~~ 190 (454)
T 1jl5_A 163 NSLKKLPDLP---PSLEFIAAGNNQLEELPE 190 (454)
T ss_dssp SCCSCCCCCC---TTCCEEECCSSCCSSCCC
T ss_pred CcCcccCCCc---ccccEEECcCCcCCcCcc
Confidence 7777776543 467777777777655444
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=6.7e-12 Score=107.21 Aligned_cols=108 Identities=22% Similarity=0.237 Sum_probs=93.2
Q ss_pred cccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecC
Q 038724 319 HLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMD 397 (483)
Q Consensus 319 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~ 397 (483)
..+.+++++|.++.+|... .++|++|+|++|.+.+..|..+..+++|++|++++|.+..+|.. +..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999999988763 37899999999987777788899999999999999999999987 6899999999999
Q ss_pred CCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccccC
Q 038724 398 DHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSLC 440 (483)
Q Consensus 398 ~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~ 440 (483)
+|++..+|. ..+..+++|+.|++++|++.+.+
T Consensus 87 ~N~l~~~~~-----------~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPR-----------GAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCT-----------TTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCH-----------HHhcCCCCCCEEEeCCCCCCCCc
Confidence 999775532 34778999999999999987654
No 131
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.31 E-value=4.9e-12 Score=113.23 Aligned_cols=163 Identities=9% Similarity=0.038 Sum_probs=108.1
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh---h-----
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM---I----- 72 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i---~----- 72 (483)
|||++.++++.+++.....+.+.|+|++|+|||++|+++++... ....-...+.+..+.......+...+ .
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (226)
T 2chg_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFARTAPI 98 (226)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCS
T ss_pred cCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhcccCC
Confidence 69999999999999987666699999999999999999998751 11111123344444443333333322 1
Q ss_pred hcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHHHHHHHHhcCCc
Q 038724 73 LSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESWQVFQMKVGNET 138 (483)
Q Consensus 73 l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~~l~~~~~~~~~ 138 (483)
..+++.+||+||++... ....+...+.....+.++|+||+..... +.+++.++..+++...+....
T Consensus 99 ~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~ 178 (226)
T 2chg_A 99 GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG 178 (226)
T ss_dssp TTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcC
Confidence 13688999999997652 2333333332334457888887765322 889999999999988764322
Q ss_pred ccCCCCchhHHHHHHhHcCCchHHHHHHH
Q 038724 139 LVSHPAIHKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 139 ~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 167 (483)
. .-..+..+.+++.++|.|..+..+.
T Consensus 179 ~---~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 179 V---KITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp C---CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 1234567889999999998654433
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.31 E-value=3.2e-12 Score=122.87 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=44.5
Q ss_pred ceEEEEccccccccccCC--CCCCcccEEEecCCccc-cccchhhhcCCCccE-EEccCCccCccCCcccccCcCCCEEe
Q 038724 297 GLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQ-DIKNGFFQFMPCLKV-LNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~-L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
+++.|++++|+++.+++. ..+++|++|+|++|.+. .+++..|.+++++.. +.+++|++....|..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 455566666666655543 34566666666666543 244444555555433 33444443333344555555555555
Q ss_pred ccCCCCCccC
Q 038724 373 ISFTSTLELP 382 (483)
Q Consensus 373 l~~~~i~~lp 382 (483)
+++|.+..+|
T Consensus 111 l~~n~l~~~~ 120 (350)
T 4ay9_X 111 ISNTGIKHLP 120 (350)
T ss_dssp EEEECCSSCC
T ss_pred ccccccccCC
Confidence 5555554444
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=9.6e-12 Score=106.61 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=92.6
Q ss_pred ccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCC
Q 038724 320 LLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDD 398 (483)
Q Consensus 320 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~ 398 (483)
-+.+++++|.+..+|... .++|++|+|++|.+.+..|..+..+++|++|++++|.+..+|.. +..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999999988763 37899999999987777788899999999999999999999987 58999999999999
Q ss_pred CCCcCCCCCCCCccchhhHhhhccccccccceeeccCccccC
Q 038724 399 HQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSLC 440 (483)
Q Consensus 399 n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~ 440 (483)
|++..+|. ..+..+++|+.|++++|++.+..
T Consensus 91 N~l~~l~~-----------~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPR-----------GAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCT-----------TTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCH-----------HHhccccCCCEEEeCCCCccccc
Confidence 99765532 23778999999999999987654
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=8.9e-13 Score=128.68 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=68.5
Q ss_pred CcccEEEecCCccccc-cc---hhhhcCCCccEEEccCCccCc-----cCCcccccCcCCCEEeccCCCC-----CccCc
Q 038724 318 PHLLTLFLNDNYLQDI-KN---GFFQFMPCLKVLNLSYNRFLT-----KLPSGISKLVSLQHLDISFTST-----LELPE 383 (483)
Q Consensus 318 ~~L~~L~l~~n~~~~~-~~---~~~~~l~~L~~L~l~~n~~~~-----~~p~~~~~l~~L~~L~l~~~~i-----~~lp~ 383 (483)
++|++|++++|.+... .+ ..+..+++|++|++++|++.. ..|..+..+++|++|++++|.+ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 5566666666655411 11 224455566666666664321 2232455566666666666665 44555
Q ss_pred cccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhc--cccccccceeeccCccc-----c-----CCCCCcccccce
Q 038724 384 ELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEML--CLEQLNIIRLTSCSLCS-----L-----CGLPTVQCLTSR 451 (483)
Q Consensus 384 ~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~--~l~~L~~L~l~~~~l~~-----l-----~~l~~l~~l~l~ 451 (483)
.+..+++|++|+|++|.+... .....+..+. .+++|+.|++++|.+.. + ..+++|+.|+++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~-------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSAR-------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHH-------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHccCCCcCEEECCCCCCchh-------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 555666666666666653311 0011334442 26666666666666543 2 235666666666
Q ss_pred eeeee
Q 038724 452 RLNLE 456 (483)
Q Consensus 452 ~~~~~ 456 (483)
+|.++
T Consensus 312 ~N~l~ 316 (386)
T 2ca6_A 312 GNRFS 316 (386)
T ss_dssp TSBSC
T ss_pred CCcCC
Confidence 66555
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=7.8e-13 Score=129.09 Aligned_cols=160 Identities=17% Similarity=0.159 Sum_probs=102.8
Q ss_pred cccccceEEEEccccccccccC------------CCCCCcccEEEecCCcccc----ccchhhhcCCCccEEEccCCccC
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLN------------TPSCPHLLTLFLNDNYLQD----IKNGFFQFMPCLKVLNLSYNRFL 355 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~------------~~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~ 355 (483)
+..+++|+.|++++|.+..+.. ...+++|++|+|++|.+.. ..+..+..+++|++|+|++|.+.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 3356677777777765443221 0356777777887777765 23334667777888888777653
Q ss_pred ccCC----cccccC---------cCCCEEeccCCCCC--ccC---ccccCCcCCCEEecCCCCCcCCCCCCCCccchhhH
Q 038724 356 TKLP----SGISKL---------VSLQHLDISFTSTL--ELP---EELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLL 417 (483)
Q Consensus 356 ~~~p----~~~~~l---------~~L~~L~l~~~~i~--~lp---~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~ 417 (483)
...+ ..+..+ ++|++|++++|.+. .+| ..+..+++|++|++++|.+... ......
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-------g~~~l~ 208 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE-------GIEHLL 208 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh-------HHHHHH
Confidence 3222 223333 67778888777764 344 3456677788888887764310 000122
Q ss_pred h-hhccccccccceeeccCcc---------ccCCCCCcccccceeeeeeee
Q 038724 418 K-EMLCLEQLNIIRLTSCSLC---------SLCGLPTVQCLTSRRLNLEVE 458 (483)
Q Consensus 418 ~-~l~~l~~L~~L~l~~~~l~---------~l~~l~~l~~l~l~~~~~~~~ 458 (483)
. .+..+++|+.|++++|.+. .+..+++|+.|++++|.+...
T Consensus 209 ~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 3 6788889999999999872 357788899999988888654
No 136
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.28 E-value=7.3e-12 Score=123.28 Aligned_cols=212 Identities=12% Similarity=0.109 Sum_probs=122.7
Q ss_pred CCChhHHHHHHHHH-hc------CCeEEEEE--EcCCCCcHHHHHHHHHhhcccC--CCCCC-EEEEEEeCCCcCccchh
Q 038724 1 IENPKQFYQVWRFL-VK------KDVGIIGL--FGTGGVGKTTILKQINNRFCSE--RPGFD-VVIWVVVSKELKLETSQ 68 (483)
Q Consensus 1 vgr~~~~~~l~~~l-~~------~~~~~v~i--~G~~GiGKTtLa~~~~~~~~~~--~~~f~-~~~~v~~~~~~~~~~~~ 68 (483)
|||+++++++.+++ .. ...+.+.| +|++|+|||+||+++++..... ..++. .++|+.+....+...+.
T Consensus 25 ~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (412)
T 1w5s_A 25 RVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTIL 104 (412)
T ss_dssp SSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHH
T ss_pred CChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHH
Confidence 69999999999998 42 24567777 9999999999999999876210 00122 35677754433322222
Q ss_pred HH----------------------h----hhcCCcEEEEEcCCCCcc--------ccccccCCC---CCCC--CCCEEEE
Q 038724 69 DD----------------------M----ILSTKKFLLLLDDLWETI--------DLSKIGVPL---PSQK--IVSKVVF 109 (483)
Q Consensus 69 ~~----------------------i----~l~~~~~LlvlDdv~~~~--------~~~~l~~~~---~~~~--~gs~ilv 109 (483)
.. + .-.+++++|||||++... .+..+...+ +..+ ....+|+
T Consensus 105 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~ 184 (412)
T 1w5s_A 105 SLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLL 184 (412)
T ss_dssp HHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEE
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEE
Confidence 11 1 223679999999997632 122221211 1111 3345777
Q ss_pred ecCChh-------------------hhhccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcC------CchHHHH
Q 038724 110 TTHSEE-------------------VCVDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCG------GLPLALT 164 (483)
Q Consensus 110 TtR~~~-------------------~~l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~------g~Plal~ 164 (483)
||+... +.+++++.++++++|........ ....-..+..+.+++.|+ |.|..+.
T Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~ 263 (412)
T 1w5s_A 185 VASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSARRAI 263 (412)
T ss_dssp EEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHH
T ss_pred EeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcHHHHH
Confidence 776432 11889999999999976542111 011223567888999999 9997655
Q ss_pred HHHHHhc------CC--CCHHHHHHHHHHHHhcccCCCChHHHHHhhhcccCCCCchhhhHHHhhhcCC
Q 038724 165 IVGRAMA------YK--KTPEEWKDAIEILMRSALQFPGINKVYYRLKFSFDRLPSDQIRSCFLFCSPF 225 (483)
Q Consensus 165 ~~~~~l~------~~--~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~a~f 225 (483)
.+..... .. -+.+.+...... .. . ...+...+..||+ +.+.++..++.+
T Consensus 264 ~l~~~a~~~a~~~~~~~i~~~~v~~~~~~---~~-------~-~~~~~~~l~~l~~-~~~~~l~aia~l 320 (412)
T 1w5s_A 264 VALKMACEMAEAMGRDSLSEDLVRKAVSE---NE-------A-ASIQTHELEALSI-HELIILRLIAEA 320 (412)
T ss_dssp HHHHHHHHHHHHTTCSSCCHHHHHHHHHH---C--------------CCSSSSSCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHH---Hh-------c-cchHHHHHHcCCH-HHHHHHHHHHHH
Confidence 4443211 10 112222222211 00 0 2335567788998 788888877764
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=1.2e-13 Score=121.49 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=67.5
Q ss_pred CCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCccccCCcCCCEEe
Q 038724 316 SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEELKALEKLKYLD 395 (483)
Q Consensus 316 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 395 (483)
.+++|++|++++|.+..++ .+..+++|++|++++|. +..+|..+..+++|++|++++|.+..+| .+..+++|++|+
T Consensus 46 ~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 4566777777777666655 36666677777777765 3456666666666777777777666665 466666777777
Q ss_pred cCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCc
Q 038724 396 MDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSL 436 (483)
Q Consensus 396 l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l 436 (483)
+++|.+... ..+..+..+++|+.|++++|++
T Consensus 122 l~~N~i~~~----------~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 122 MSNNKITNW----------GEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ESEEECCCH----------HHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCcCCch----------hHHHHHhcCCCCCEEEecCCcc
Confidence 777664321 1223566666777777777665
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=2.1e-13 Score=119.88 Aligned_cols=152 Identities=24% Similarity=0.281 Sum_probs=115.3
Q ss_pred hhhhhhcccCcc------ccccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCC
Q 038724 279 DILEKLRDVVPS------DALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYN 352 (483)
Q Consensus 279 ~~~~~l~~~~~~------~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 352 (483)
.....+....+. .+..+++++.|++++|.++.++....+++|++|++++|.+..++.. +..+++|++|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC
Confidence 334444444444 6667889999999999999987556789999999999999987764 677899999999999
Q ss_pred ccCccCCcccccCcCCCEEeccCCCCCccCc--cccCCcCCCEEecCCCCCcCC-CCCCCCccchhhHhhhccccccccc
Q 038724 353 RFLTKLPSGISKLVSLQHLDISFTSTLELPE--ELKALEKLKYLDMDDHQQVME-EGNCQSDDAESLLKEMLCLEQLNII 429 (483)
Q Consensus 353 ~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~n~~~~~-p~~~~l~~~~~~~~~l~~l~~L~~L 429 (483)
.+ ..+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|.+... |.... ........+..+++|+.|
T Consensus 104 ~l-~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~--~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 104 QI-ASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA--TSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EC-CCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT--HHHHHHHHHHHCSSCSEE
T ss_pred cC-CcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccc--hHHHHHHHHHhCCCcEEE
Confidence 74 4566 68999999999999999998875 689999999999999986533 21000 001112236788888888
Q ss_pred eeeccCcc
Q 038724 430 RLTSCSLC 437 (483)
Q Consensus 430 ~l~~~~l~ 437 (483)
+ ++++.
T Consensus 180 d--~~~i~ 185 (198)
T 1ds9_A 180 D--GMPVD 185 (198)
T ss_dssp C--CGGGT
T ss_pred C--CcccC
Confidence 6 55543
No 139
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.23 E-value=2.8e-12 Score=123.92 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=79.9
Q ss_pred ceEEEEccccccccccCC--CC-----CCcccEEEecCCccccccchhh----hcC-CCccEEEccCCccCccCCcccc-
Q 038724 297 GLRRMSLMNNQIKTLLNT--PS-----CPHLLTLFLNDNYLQDIKNGFF----QFM-PCLKVLNLSYNRFLTKLPSGIS- 363 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~--~~-----~~~L~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~p~~~~- 363 (483)
+++.|++++|.++..... .. +++|++|+|++|.+....+..+ ..+ ++|++|++++|.+....+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 455555555555543221 11 2555555555555554433322 222 4555555555553333222222
Q ss_pred ---c-CcCCCEEeccCCCCC-----ccCccccCCc-CCCEEecCCCCCcCCCCCCCCccchhhHhhhccc-cccccceee
Q 038724 364 ---K-LVSLQHLDISFTSTL-----ELPEELKALE-KLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCL-EQLNIIRLT 432 (483)
Q Consensus 364 ---~-l~~L~~L~l~~~~i~-----~lp~~~~~l~-~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l-~~L~~L~l~ 432 (483)
. .++|++|++++|.+. .++..+..++ +|++|++++|.+...+ .......+..+ ++|+.|+++
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN-------CAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHTSCTTCCEEECT
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh-------HHHHHHHHHhCCCCCCEEECC
Confidence 1 135556666655544 2333334443 5666666665543220 11222344555 488888888
Q ss_pred ccCccc-----c----CC-CCCcccccceeeeeeeeec
Q 038724 433 SCSLCS-----L----CG-LPTVQCLTSRRLNLEVEDW 460 (483)
Q Consensus 433 ~~~l~~-----l----~~-l~~l~~l~l~~~~~~~~~~ 460 (483)
+|.+.. + .. .++|+.|++++|.++..+.
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 888754 2 22 3478888888888776544
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.22 E-value=2e-11 Score=117.36 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=89.8
Q ss_pred EEEEccccccccccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCc-ccccCcCCCE-EeccCC
Q 038724 299 RRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPS-GISKLVSLQH-LDISFT 376 (483)
Q Consensus 299 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~-L~l~~~ 376 (483)
+.++.+++.++.+|..- .++++.|+|++|.++.+++..|.++++|++|+|++|++.+.+|. .|.++++|.. +.+.+|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 35677888898887532 47899999999999999998899999999999999987777764 5788888876 566678
Q ss_pred CCCccCcc-ccCCcCCCEEecCCCCCcCCCC
Q 038724 377 STLELPEE-LKALEKLKYLDMDDHQQVMEEG 406 (483)
Q Consensus 377 ~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~ 406 (483)
++..+|+. +..+++|++|++++|.+...|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred cccccCchhhhhccccccccccccccccCCc
Confidence 89999655 8999999999999999887754
No 141
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.22 E-value=2.4e-12 Score=124.41 Aligned_cols=169 Identities=12% Similarity=0.054 Sum_probs=123.1
Q ss_pred hhhhcccCccccccc-----cceEEEEccccccccccCC------CCC-CcccEEEecCCccccccchhhhc-----CCC
Q 038724 281 LEKLRDVVPSDALKW-----LGLRRMSLMNNQIKTLLNT------PSC-PHLLTLFLNDNYLQDIKNGFFQF-----MPC 343 (483)
Q Consensus 281 ~~~l~~~~~~~~~~~-----~~l~~l~l~~~~~~~~~~~------~~~-~~L~~L~l~~n~~~~~~~~~~~~-----l~~ 343 (483)
.+.+.+.....+... ++|+.|++++|.++..... ..+ ++|++|++++|.+...+...+.. .++
T Consensus 60 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 139 (362)
T 3goz_A 60 GNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence 344444444444433 8899999999999876532 233 79999999999998877654433 368
Q ss_pred ccEEEccCCccCc----cCCcccccCc-CCCEEeccCCCCCccCc-----cccCC-cCCCEEecCCCCCcCCCCCCCCcc
Q 038724 344 LKVLNLSYNRFLT----KLPSGISKLV-SLQHLDISFTSTLELPE-----ELKAL-EKLKYLDMDDHQQVMEEGNCQSDD 412 (483)
Q Consensus 344 L~~L~l~~n~~~~----~~p~~~~~l~-~L~~L~l~~~~i~~lp~-----~~~~l-~~L~~L~l~~n~~~~~p~~~~l~~ 412 (483)
|++|++++|.+.. .++..+..+. +|++|++++|.+...+. .+..+ ++|++|+|++|.+....
T Consensus 140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~------- 212 (362)
T 3goz_A 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS------- 212 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-------
T ss_pred eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH-------
Confidence 9999999998654 3344455565 99999999999877654 34555 59999999999965320
Q ss_pred chhhHhhhccc-cccccceeeccCccc---------cCCCCCcccccceeeeee
Q 038724 413 AESLLKEMLCL-EQLNIIRLTSCSLCS---------LCGLPTVQCLTSRRLNLE 456 (483)
Q Consensus 413 ~~~~~~~l~~l-~~L~~L~l~~~~l~~---------l~~l~~l~~l~l~~~~~~ 456 (483)
....+..+..+ ++|+.|++++|.+.. +..++.|+.|++++|.+.
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 12355667664 499999999998854 367789999999988744
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=8.5e-11 Score=112.81 Aligned_cols=105 Identities=15% Similarity=0.176 Sum_probs=91.9
Q ss_pred EEEcccc-ccccccCCCCCCcccEEEecC-CccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCC
Q 038724 300 RMSLMNN-QIKTLLNTPSCPHLLTLFLND-NYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTS 377 (483)
Q Consensus 300 ~l~l~~~-~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~ 377 (483)
.++.+++ .++.+|....+.+|+.|+|++ |.++.+++..|..+++|++|+|++|++.+..|..|..+++|++|+|++|.
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4677887 899888867788999999996 99999998889999999999999998777778889999999999999999
Q ss_pred CCccCccccCCcCCCEEecCCCCCcCC
Q 038724 378 TLELPEELKALEKLKYLDMDDHQQVME 404 (483)
Q Consensus 378 i~~lp~~~~~l~~L~~L~l~~n~~~~~ 404 (483)
+..+|..+....+|+.|+|.+|.+...
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCccCC
Confidence 999998754444599999999997643
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.16 E-value=3e-10 Score=110.53 Aligned_cols=206 Identities=14% Similarity=-0.008 Sum_probs=124.0
Q ss_pred CCChhHHHHHHHHHhc----CCeEEEEEEcCCCCcHHHHHHHHHhhcccC----CCC-CCEEEEEEeCCCc-Cc------
Q 038724 1 IENPKQFYQVWRFLVK----KDVGIIGLFGTGGVGKTTILKQINNRFCSE----RPG-FDVVIWVVVSKEL-KL------ 64 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~----~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~~-f~~~~~v~~~~~~-~~------ 64 (483)
+||+++++++.+++.. ...+.+.|+|++|+|||++|+++++..... .+. ....+|++..... +.
T Consensus 23 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 102 (384)
T 2qby_B 23 PFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSS 102 (384)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHH
Confidence 6999999999877764 345689999999999999999999865111 011 2346677654322 11
Q ss_pred -----------------cchhHHh--hhcCCcEEEEEcCCCCccc-------cccccCCCCCCCCCCEEEEecCChhhh-
Q 038724 65 -----------------ETSQDDM--ILSTKKFLLLLDDLWETID-------LSKIGVPLPSQKIVSKVVFTTHSEEVC- 117 (483)
Q Consensus 65 -----------------~~~~~~i--~l~~~~~LlvlDdv~~~~~-------~~~l~~~~~~~~~gs~ilvTtR~~~~~- 117 (483)
..+...+ .+..++.+|||||++.... +..+.... .+..+|+||+.....
T Consensus 103 l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 103 LAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTT
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHh
Confidence 1222222 3445555999999975421 22222221 567888888865211
Q ss_pred ---------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcC---CchH-HHHHHHHHh--c---CC
Q 038724 118 ---------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCG---GLPL-ALTIVGRAM--A---YK 173 (483)
Q Consensus 118 ---------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~Pl-al~~~~~~l--~---~~ 173 (483)
+++++.++..+++...+.... ....-..+..+.+++.++ |.|. ++.++.... . ..
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 889999999999998753110 011223456778888887 8887 444433322 1 11
Q ss_pred CCHHHHHHHHHHHHhcccCCCChHHHHHhhhcccCCCCchhhhHHHhhhcC
Q 038724 174 KTPEEWKDAIEILMRSALQFPGINKVYYRLKFSFDRLPSDQIRSCFLFCSP 224 (483)
Q Consensus 174 ~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~a~ 224 (483)
-+.+.+..+++.... ..+..+++.|++ +.+..+..++.
T Consensus 258 i~~~~v~~~~~~~~~------------~~~~~~~~~l~~-~~~~~l~al~~ 295 (384)
T 2qby_B 258 IRKEHVDKAIVDYEQ------------ERLIEAVKALPF-HYKLALRSLIE 295 (384)
T ss_dssp CCHHHHHHHHHHHHH------------HHHHHHHHSSCH-HHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHhc------------chHHHHHHcCCH-HHHHHHHHHHH
Confidence 345556555544321 234455667777 56666655555
No 144
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=4.8e-11 Score=113.29 Aligned_cols=163 Identities=11% Similarity=0.130 Sum_probs=106.8
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchh---HHhh-----
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQ---DDMI----- 72 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~---~~i~----- 72 (483)
|||++.++.+.+++..+..+.+.|+|++|+|||++|+++++.... .......+++..+.......+. ..+.
T Consensus 24 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 102 (323)
T 1sxj_B 24 VGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH 102 (323)
T ss_dssp CSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCC
T ss_pred HCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccChHHHHHHHHHHHhcccc
Confidence 699999999999999876666999999999999999999987511 1111123444444433332222 2221
Q ss_pred h-cCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHHHHHHHHhcCC
Q 038724 73 L-STKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESWQVFQMKVGNE 137 (483)
Q Consensus 73 l-~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~~l~~~~~~~~ 137 (483)
. .+++.++|+||++... ....+...+.....++++|++|+..... +.+++.++..+++...+...
T Consensus 103 ~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~ 182 (323)
T 1sxj_B 103 LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLE 182 (323)
T ss_dssp CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHc
Confidence 2 4568999999997642 2333433333333457788877654322 88999999999998776432
Q ss_pred cccCCCCchhHHHHHHhHcCCchHH-HHHHH
Q 038724 138 TLVSHPAIHKPAKMVAKDCGGLPLA-LTIVG 167 (483)
Q Consensus 138 ~~~~~~~~~~~~~~i~~~c~g~Pla-l~~~~ 167 (483)
.. .-..+..+.+++.++|.|.. +..+.
T Consensus 183 ~~---~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 183 DV---KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TC---CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 21 12245678899999999954 44443
No 145
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.08 E-value=2.9e-10 Score=110.75 Aligned_cols=209 Identities=13% Similarity=0.078 Sum_probs=119.9
Q ss_pred CCChhHHHHHHHHHhc----CCeEEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCEEEEEEeCCCcCcc--------
Q 038724 1 IENPKQFYQVWRFLVK----KDVGIIGLFGTGGVGKTTILKQINNRFCSER---PGFDVVIWVVVSKELKLE-------- 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~----~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~~~v~~~~~~~~~-------- 65 (483)
+||+++++++.+++.. ...+.+.|+|++|+|||++|+++++...... +.-...+|++.....+..
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 101 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAE 101 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHH
Confidence 6999999999998853 3557899999999999999999998761110 011235666655433222
Q ss_pred --------------chhHHh----hhcCCcEEEEEcCCCCccc-------cccccCCCCCC--CCCCEEEEecCChhhh-
Q 038724 66 --------------TSQDDM----ILSTKKFLLLLDDLWETID-------LSKIGVPLPSQ--KIVSKVVFTTHSEEVC- 117 (483)
Q Consensus 66 --------------~~~~~i----~l~~~~~LlvlDdv~~~~~-------~~~l~~~~~~~--~~gs~ilvTtR~~~~~- 117 (483)
++...+ ...+++++|||||++.... +..+....... ..+..+|+||+.....
T Consensus 102 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~ 181 (387)
T 2v1u_A 102 AVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVE 181 (387)
T ss_dssp HHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSS
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHh
Confidence 112222 2356789999999975421 11111111111 3346677777654211
Q ss_pred ----------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcC---CchHHH-HHHHHHhc-----C
Q 038724 118 ----------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCG---GLPLAL-TIVGRAMA-----Y 172 (483)
Q Consensus 118 ----------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~Plal-~~~~~~l~-----~ 172 (483)
+++++.++..+++...+.... ....-..+..+.+++.++ |.|..+ .++..... .
T Consensus 182 ~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~ 260 (387)
T 2v1u_A 182 NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAF-NPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRR 260 (387)
T ss_dssp SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHB-CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcC
Confidence 889999999999987753210 011223455778888887 999443 33222211 1
Q ss_pred --CCCHHHHHHHHHHHHhcccCCCChHHHHHhhhcccCCCCchhhhHHHhhhc
Q 038724 173 --KKTPEEWKDAIEILMRSALQFPGINKVYYRLKFSFDRLPSDQIRSCFLFCS 223 (483)
Q Consensus 173 --~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~a 223 (483)
.-+.+.+..+++.... ..+..++..+++ +.+..+..++
T Consensus 261 ~~~i~~~~v~~a~~~~~~------------~~~~~~~~~l~~-~~~~~l~a~~ 300 (387)
T 2v1u_A 261 EERVRREHVYSARAEIER------------DRVSEVVRTLPL-HAKLVLLSIM 300 (387)
T ss_dssp CSCBCHHHHHHHHHHHHH------------HHHHHHHHSSCH-HHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhh------------chHHHHHHcCCH-HHHHHHHHHH
Confidence 1234555554443321 124445677887 5555555444
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.07 E-value=1.1e-10 Score=113.71 Aligned_cols=163 Identities=12% Similarity=0.084 Sum_probs=100.2
Q ss_pred CCChhHHHHHHHHHhc----CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-------------
Q 038724 1 IENPKQFYQVWRFLVK----KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK------------- 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~----~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~------------- 63 (483)
+||+++++++.+++.. ...+.+.|+|++|+||||||+++++......+.-...+|+......+
T Consensus 23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~ 102 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLD 102 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTS
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6999999999999874 44578999999999999999999987621111023456776432211
Q ss_pred ---------ccchhHHh----hhcCCcEEEEEcCCCCcc------ccccccCCCCC-CCCCCEEEEecCChhhh------
Q 038724 64 ---------LETSQDDM----ILSTKKFLLLLDDLWETI------DLSKIGVPLPS-QKIVSKVVFTTHSEEVC------ 117 (483)
Q Consensus 64 ---------~~~~~~~i----~l~~~~~LlvlDdv~~~~------~~~~l~~~~~~-~~~gs~ilvTtR~~~~~------ 117 (483)
..++...+ ...+++.+||||+++... .+..+...+.. ...+..+|+||+.....
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~ 182 (386)
T 2qby_A 103 VKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPR 182 (386)
T ss_dssp CCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHH
Confidence 11222222 334569999999996532 22222211111 12345667777654321
Q ss_pred -----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcC---CchHHHH
Q 038724 118 -----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCG---GLPLALT 164 (483)
Q Consensus 118 -----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~Plal~ 164 (483)
+++++.++..+++...+.... ....-..+..+.+++.++ |.|..+.
T Consensus 183 ~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 183 VKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp HHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 789999999999987653111 111233456777888887 9998443
No 147
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=2.5e-10 Score=108.45 Aligned_cols=164 Identities=9% Similarity=0.047 Sum_probs=107.7
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh-------hh
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM-------IL 73 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i-------~l 73 (483)
||+++.++.+.+++..+..+.+.|+|++|+|||++|+++++... ....-...+.+..+.......+...+ ..
T Consensus 28 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGINVIREKVKEFARTKPI 106 (327)
T ss_dssp CSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCG
T ss_pred hCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchHHHHHHHHHHHhhCCc
Confidence 69999999999999988766799999999999999999998751 11100113344444332222222222 12
Q ss_pred c-CCcEEEEEcCCCCc--cccccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHHHHHHHHhcCCc
Q 038724 74 S-TKKFLLLLDDLWET--IDLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESWQVFQMKVGNET 138 (483)
Q Consensus 74 ~-~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~~l~~~~~~~~~ 138 (483)
. +++.++|+||++.. .....+...+.....++++|+||...... +.+++.++..+++...+....
T Consensus 107 ~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (327)
T 1iqp_A 107 GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG 186 (327)
T ss_dssp GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcC
Confidence 2 67889999999765 23333433333333457888887654322 788999999999988765433
Q ss_pred ccCCCCchhHHHHHHhHcCCchHHHHHHHH
Q 038724 139 LVSHPAIHKPAKMVAKDCGGLPLALTIVGR 168 (483)
Q Consensus 139 ~~~~~~~~~~~~~i~~~c~g~Plal~~~~~ 168 (483)
. .-..+..+.+++.++|.|..+..+..
T Consensus 187 ~---~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 187 L---ELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp C---EECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C---CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1 22345678899999999986554433
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.03 E-value=1.1e-09 Score=106.64 Aligned_cols=162 Identities=14% Similarity=0.109 Sum_probs=104.6
Q ss_pred CCChhHHHHHHHHHhc----CCeE--EEEEEcCCCCcHHHHHHHHHhhcccCCCC-CCEEEEEEeCCCcCccchhHHh--
Q 038724 1 IENPKQFYQVWRFLVK----KDVG--IIGLFGTGGVGKTTILKQINNRFCSERPG-FDVVIWVVVSKELKLETSQDDM-- 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~----~~~~--~v~i~G~~GiGKTtLa~~~~~~~~~~~~~-f~~~~~v~~~~~~~~~~~~~~i-- 71 (483)
+||+++++++.+++.. .... .+.|+|++|+||||+|+++++.. ... -...+|+..+...+...+...+
T Consensus 20 ~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 6999999999999875 2323 89999999999999999999877 222 1346677655544332222221
Q ss_pred ------------------------hhcCCcEEEEEcCCCCc--cccccccCCCCCCC----CCCEEEEecCChhhh----
Q 038724 72 ------------------------ILSTKKFLLLLDDLWET--IDLSKIGVPLPSQK----IVSKVVFTTHSEEVC---- 117 (483)
Q Consensus 72 ------------------------~l~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~----~gs~ilvTtR~~~~~---- 117 (483)
.-.+++.+||||+++.. .....+...+.... .+..+|++|+.....
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 22366899999999765 22333333332211 356777777655221
Q ss_pred -------------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHc---------CCchHHHHHH
Q 038724 118 -------------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDC---------GGLPLALTIV 166 (483)
Q Consensus 118 -------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c---------~g~Plal~~~ 166 (483)
+.+++.++..+++...+.... ....-..+..+.+++.+ +|.|..+..+
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 788999999999987653211 01122356678899999 7887654433
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=6e-10 Score=106.86 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=88.5
Q ss_pred cEEEecCC-ccccccchhhhcCCCccEEEccC-CccCccCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecC
Q 038724 321 LTLFLNDN-YLQDIKNGFFQFMPCLKVLNLSY-NRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMD 397 (483)
Q Consensus 321 ~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~ 397 (483)
..++++++ .+..+|. +..+++|++|+|++ |.+.+..|..|+.+++|++|+|++|.+..+|+. |.+|++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 8999887 88899999999996 875555557899999999999999999998775 7999999999999
Q ss_pred CCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccccCCCC
Q 038724 398 DHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCSLCGLP 443 (483)
Q Consensus 398 ~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~l~ 443 (483)
+|++..+|. ..+..++ |+.|++.+|++.+.+.+.
T Consensus 89 ~N~l~~~~~-----------~~~~~~~-L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 89 FNALESLSW-----------KTVQGLS-LQELVLSGNPLHCSCALR 122 (347)
T ss_dssp SSCCSCCCS-----------TTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred CCccceeCH-----------HHcccCC-ceEEEeeCCCccCCCccH
Confidence 999876643 1233344 999999999987655443
No 150
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.00 E-value=6.9e-10 Score=105.34 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=102.6
Q ss_pred CCChhHHHHHHHHHhc-----CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhh-c
Q 038724 1 IENPKQFYQVWRFLVK-----KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMIL-S 74 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-----~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l-~ 74 (483)
||++..++++.+++.. ...+.+.|+|++|+|||++|+++++.. ... ..++..+......++...+.- .
T Consensus 15 ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~l~~~~ 88 (324)
T 1hqc_A 15 IGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAILANSL 88 (324)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHHHTTTC
T ss_pred hCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHHHHHhc
Confidence 6899999998888863 234678999999999999999999876 222 234444333333344433332 3
Q ss_pred CCcEEEEEcCCCCccc--cccccCCCCC------------------CCCCCEEEEecCChhh-------------hhccC
Q 038724 75 TKKFLLLLDDLWETID--LSKIGVPLPS------------------QKIVSKVVFTTHSEEV-------------CVDCF 121 (483)
Q Consensus 75 ~~~~LlvlDdv~~~~~--~~~l~~~~~~------------------~~~gs~ilvTtR~~~~-------------~l~~L 121 (483)
.+..+|+||+++.... ...+...+.. .....+++.||..... .+.++
T Consensus 89 ~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCC
T ss_pred cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCC
Confidence 5677999999976531 1111110000 0013456665543211 18889
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHHHHh
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVGRAM 170 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l 170 (483)
+.++..+++......... .-..+..+.+++.++|.|..+..+...+
T Consensus 169 ~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 169 TPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999887754331 2234668899999999998887666554
No 151
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.98 E-value=7.4e-11 Score=117.85 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=104.4
Q ss_pred cccccceEEEEccccccccc-----cC-CCCCCcccEEEecCCccccccc-hhhhcCC----CccEEEccCCccCc----
Q 038724 292 ALKWLGLRRMSLMNNQIKTL-----LN-TPSCPHLLTLFLNDNYLQDIKN-GFFQFMP----CLKVLNLSYNRFLT---- 356 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~-----~~-~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~----~L~~L~l~~n~~~~---- 356 (483)
+..+++++.|++++|.++.. +. ...+++|++|++++|.+..... .++..++ +|++|++++|.+..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 34566777788888777632 11 1356778888888877765322 2233344 58888888886542
Q ss_pred cCCcccccCcCCCEEeccCCCCCccCc-----c-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccce
Q 038724 357 KLPSGISKLVSLQHLDISFTSTLELPE-----E-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIR 430 (483)
Q Consensus 357 ~~p~~~~~l~~L~~L~l~~~~i~~lp~-----~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~ 430 (483)
.+|..+..+++|++|++++|.+..... . ....++|++|++++|.+.... ....+..+..+++|+.|+
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-------~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS-------CEPLASVLRAKPDFKELT 176 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-------HHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH-------HHHHHHHHhhCCCCCEEE
Confidence 456677777888888888877654211 1 123456888888887754220 123456677889999999
Q ss_pred eeccCccc-----cC-----CCCCcccccceeeeeeeee
Q 038724 431 LTSCSLCS-----LC-----GLPTVQCLTSRRLNLEVED 459 (483)
Q Consensus 431 l~~~~l~~-----l~-----~l~~l~~l~l~~~~~~~~~ 459 (483)
+++|.+.. +. ..+.|+.|++++++++...
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 99998733 21 3568999999988887543
No 152
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.97 E-value=9.4e-11 Score=117.07 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=87.0
Q ss_pred cccceEEEEcccccccccc-----C--CCCCCcccEEEecCCccccc----cchhhhcCCCccEEEccCCccCccCCccc
Q 038724 294 KWLGLRRMSLMNNQIKTLL-----N--TPSCPHLLTLFLNDNYLQDI----KNGFFQFMPCLKVLNLSYNRFLTKLPSGI 362 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~-----~--~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 362 (483)
.+++++.|++++|.++... + ...+++|++|++++|.++.. .+..+..+++|++|++++|.+....+..+
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 4566667777777655421 1 02356777777777766552 12235556677777777775433222222
Q ss_pred cc-----CcCCCEEeccCCCCCc-----cCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhh----cc-ccccc
Q 038724 363 SK-----LVSLQHLDISFTSTLE-----LPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEM----LC-LEQLN 427 (483)
Q Consensus 363 ~~-----l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l----~~-l~~L~ 427 (483)
.. .++|++|++++|.+.. +|..+..+++|+.|++++|.+. ...+..+ .. .++|+
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~-----------~~~~~~l~~~l~~~~~~L~ 373 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE-----------DAGVRELCQGLGQPGSVLR 373 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH-----------HHHHHHHHHHHTSTTCCCC
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc-----------cccHHHHHHHHcCCCCceE
Confidence 22 2467777777776554 3444556677777777777643 1222222 21 45677
Q ss_pred cceeeccCccc---------cCCCCCcccccceeeeeeeeec
Q 038724 428 IIRLTSCSLCS---------LCGLPTVQCLTSRRLNLEVEDW 460 (483)
Q Consensus 428 ~L~l~~~~l~~---------l~~l~~l~~l~l~~~~~~~~~~ 460 (483)
.|++++|.+.. +..+++|+.|++++|.++....
T Consensus 374 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~ 415 (461)
T 1z7x_W 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred EEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence 77777776541 3445667777776666654433
No 153
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.97 E-value=3.1e-09 Score=100.51 Aligned_cols=162 Identities=9% Similarity=0.058 Sum_probs=107.4
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccch---hHHhh----h
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETS---QDDMI----L 73 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~---~~~i~----l 73 (483)
||+++.++.+.+++..+..+.+.|+|++|+|||++|+++++... ....-...+.+..+.......+ ..... .
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (319)
T 2chq_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFARTAPI 98 (319)
T ss_dssp CSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCS
T ss_pred hCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHHHHHHHHHHHhcCCC
Confidence 68999999999999887666699999999999999999998751 1111111234444443332222 22221 2
Q ss_pred -cCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHHHHHHHHhcCCc
Q 038724 74 -STKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESWQVFQMKVGNET 138 (483)
Q Consensus 74 -~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~~l~~~~~~~~~ 138 (483)
.+++.++|+|+++... ....+...+.....+.++|+||...... +.+++.++..+++...+....
T Consensus 99 ~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~ 178 (319)
T 2chq_A 99 GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG 178 (319)
T ss_dssp SSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 2678999999997542 2344555554444567777777654321 788999999999987775443
Q ss_pred ccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 139 LVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 139 ~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
. .-..+..+.+++.++|.+..+...
T Consensus 179 ~---~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 179 V---KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp C---CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred C---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 223456788999999999765433
No 154
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.94 E-value=4.7e-09 Score=101.65 Aligned_cols=164 Identities=13% Similarity=0.104 Sum_probs=104.7
Q ss_pred CCChhHHHHHHHHHhcCC-eEEEEEEcCCCCcHHHHHHHHHhhcccCCCC------------------CCEEEEEEeCCC
Q 038724 1 IENPKQFYQVWRFLVKKD-VGIIGLFGTGGVGKTTILKQINNRFCSERPG------------------FDVVIWVVVSKE 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~-~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~------------------f~~~~~v~~~~~ 61 (483)
|||++.++.+.+++..+. .+.+.|+|++|+|||++|+++++........ +...+.+..+..
T Consensus 19 vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR 98 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCS
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEeccccc
Confidence 799999999999998764 3568999999999999999998876211100 001233333322
Q ss_pred cC---ccchhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccC
Q 038724 62 LK---LETSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCF 121 (483)
Q Consensus 62 ~~---~~~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L 121 (483)
.. .+++...+ ...+++.++|+||++... ....+...+.....+..+|++|...... +.++
T Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l 178 (373)
T 1jr3_A 99 TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178 (373)
T ss_dssp CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCC
Confidence 22 22333333 235678899999997542 2333433333333356666666543321 7899
Q ss_pred ChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHH
Q 038724 122 TPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 122 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 167 (483)
+.++..+++...+.... ..-..+..+.+++.++|.|..+..+.
T Consensus 179 ~~~~~~~~l~~~~~~~~---~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 179 DVEQIRHQLEHILNEEH---IAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CHHHHHHHHHHHHHHHT---CCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 99999999987664322 12234567889999999998876554
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.93 E-value=4.8e-11 Score=115.16 Aligned_cols=155 Identities=16% Similarity=0.101 Sum_probs=71.2
Q ss_pred ceEEEEccccccccccCC-------CCCCcccEEEecCCcccccc-chhhhcCCCccEEEccCCccCccCCccc-----c
Q 038724 297 GLRRMSLMNNQIKTLLNT-------PSCPHLLTLFLNDNYLQDIK-NGFFQFMPCLKVLNLSYNRFLTKLPSGI-----S 363 (483)
Q Consensus 297 ~l~~l~l~~~~~~~~~~~-------~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~~~-----~ 363 (483)
.++.+++++|.++..... ...++|+.|+|++|.+.... ......+++|+.|+|++|.+...-...+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 355556666555432211 12245666666666554321 1112234455666666664322211222 1
Q ss_pred cCcCCCEEeccCCCCCc-----cCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc
Q 038724 364 KLVSLQHLDISFTSTLE-----LPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS 438 (483)
Q Consensus 364 ~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 438 (483)
..++|++|++++|.++. ++..+..+++|++|+|++|.+... ......+.+...++|+.|++++|.+..
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~-------g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE-------GLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH-------HHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH-------HHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 23456666666665543 333344555566666666653211 001123344455556666666665421
Q ss_pred ---------cCCCCCcccccceeeeeeee
Q 038724 439 ---------LCGLPTVQCLTSRRLNLEVE 458 (483)
Q Consensus 439 ---------l~~l~~l~~l~l~~~~~~~~ 458 (483)
+...+.|+.|++++|.++..
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 22335555555555555443
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=5.5e-09 Score=99.29 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=64.2
Q ss_pred CcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccc-cceeeccCc-----c
Q 038724 365 LVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLN-IIRLTSCSL-----C 437 (483)
Q Consensus 365 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~-~L~l~~~~l-----~ 437 (483)
+++|+++++++|++..+|.. |.++++|+.|++.+| +..+ ....|..+++|+ .+.+.+ .+ .
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I-----------~~~aF~~~~~L~~~l~l~~-~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTI-----------GQRVFSNCGRLAGTLELPA-SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEE-----------CTTTTTTCTTCCEEEEECT-TCCEECTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-ccee-----------hHHHhhCChhccEEEEEcc-cceEEchh
Confidence 57888888888888888876 788888888888887 3322 224577888888 888877 43 3
Q ss_pred ccCCCCCcccccceeeeeeeeecccccCc
Q 038724 438 SLCGLPTVQCLTSRRLNLEVEDWHKCTGE 466 (483)
Q Consensus 438 ~l~~l~~l~~l~l~~~~~~~~~~~~~~~~ 466 (483)
.+.++++|+.+++..+++...+-.++.++
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred hhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 46778888888887777766555554444
No 157
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.77 E-value=2.5e-09 Score=92.93 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=60.2
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEeCCCc----C-------cc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERP----GFDVVIWVVVSKEL----K-------LE 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~f~~~~~v~~~~~~----~-------~~ 65 (483)
+||+++++++.+.+.....+.+.|+|++|+|||++|+++++....... .....+++..+... . ..
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLK 104 (195)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHH
Confidence 699999999999998877778899999999999999999987621110 12234555433211 0 11
Q ss_pred chhHHhhhcCCcEEEEEcCCCCc
Q 038724 66 TSQDDMILSTKKFLLLLDDLWET 88 (483)
Q Consensus 66 ~~~~~i~l~~~~~LlvlDdv~~~ 88 (483)
.+...+...+++.+|||||++..
T Consensus 105 ~~~~~~~~~~~~~vl~iDe~~~l 127 (195)
T 1jbk_A 105 GVLNDLAKQEGNVILFIDELHTM 127 (195)
T ss_dssp HHHHHHHHSTTTEEEEEETGGGG
T ss_pred HHHHHHhhcCCCeEEEEeCHHHH
Confidence 22222234677899999999754
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.75 E-value=1.1e-09 Score=105.73 Aligned_cols=135 Identities=20% Similarity=0.122 Sum_probs=99.8
Q ss_pred cceEEEEccccccccccC--C-CCCCcccEEEecCCccccccchhh-----hcCCCccEEEccCCccCc----cCCcccc
Q 038724 296 LGLRRMSLMNNQIKTLLN--T-PSCPHLLTLFLNDNYLQDIKNGFF-----QFMPCLKVLNLSYNRFLT----KLPSGIS 363 (483)
Q Consensus 296 ~~l~~l~l~~~~~~~~~~--~-~~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~----~~p~~~~ 363 (483)
..++.|++++|.++.... . ..+++|+.|+|++|.+.......+ ...++|++|+|++|.+.. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 579999999998864321 1 245689999999998876544333 246789999999997533 2445567
Q ss_pred cCcCCCEEeccCCCCCc-----cCccccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCcc
Q 038724 364 KLVSLQHLDISFTSTLE-----LPEELKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLC 437 (483)
Q Consensus 364 ~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~ 437 (483)
..++|++|++++|.++. ++..+...++|+.|+|++|.+.... .......+...++|+.|++++|++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g-------~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA-------ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH-------HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH-------HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 78999999999999765 3455777889999999999864220 1234455677889999999999873
No 159
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.71 E-value=1.9e-08 Score=90.73 Aligned_cols=156 Identities=10% Similarity=-0.008 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcCCcEEEEEc
Q 038724 4 PKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILSTKKFLLLLD 83 (483)
Q Consensus 4 ~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~~~~LlvlD 83 (483)
++.++.+..+......+.+.|+|++|+|||++|+++++... .....+.|+..+.-.. .+...+..-.++.+||+|
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vliiD 111 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHAS--ISTALLEGLEQFDLICID 111 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGG--SCGGGGTTGGGSSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHH--HHHHHHHhccCCCEEEEe
Confidence 45677777777765667899999999999999999998772 1223456776554222 111112222456789999
Q ss_pred CCCCccc----cccccCCCCC-CCCC-CEEEEecCChhh----------------h---hccCChHHHHHHHHHHhcCCc
Q 038724 84 DLWETID----LSKIGVPLPS-QKIV-SKVVFTTHSEEV----------------C---VDCFTPQESWQVFQMKVGNET 138 (483)
Q Consensus 84 dv~~~~~----~~~l~~~~~~-~~~g-s~ilvTtR~~~~----------------~---l~~L~~~~a~~l~~~~~~~~~ 138 (483)
|++.... ...+...+.. ...+ .++|+||+.... . +.+++.++..+++...+....
T Consensus 112 e~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~ 191 (242)
T 3bos_A 112 DVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG 191 (242)
T ss_dssp TGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT
T ss_pred ccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC
Confidence 9975422 1222211110 0112 247777653221 0 778888998888887764322
Q ss_pred ccCCCCchhHHHHHHhHcCCchHHHHHHH
Q 038724 139 LVSHPAIHKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 139 ~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 167 (483)
..-..+..+.+++.++|.+..+..+.
T Consensus 192 ---~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 192 ---LQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp ---CCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 12234567788888888886665443
No 160
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=2.7e-08 Score=95.46 Aligned_cols=162 Identities=9% Similarity=0.070 Sum_probs=100.9
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccC-CCCCCEEEEEEeCCCcCccch---hHHhh----
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSE-RPGFDVVIWVVVSKELKLETS---QDDMI---- 72 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~~f~~~~~v~~~~~~~~~~~---~~~i~---- 72 (483)
+|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++..... ...+. ...+..+.......+ .....
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSR-ILELNASDERGISIVREKVKNFARLTV 118 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTS-EEEECSSSCCCHHHHTTHHHHHHHSCC
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccc-eEEEccccccchHHHHHHHHHHhhhcc
Confidence 6899999999999988765569999999999999999998875100 01111 233333332222222 11211
Q ss_pred -----------hcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHH
Q 038724 73 -----------LSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESW 127 (483)
Q Consensus 73 -----------l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~ 127 (483)
..++..++++|+++... ....+...+.......+++++|...... +.+++.++..
T Consensus 119 ~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~ 198 (353)
T 1sxj_D 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAI 198 (353)
T ss_dssp CCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHH
T ss_pred cccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHH
Confidence 12456799999986542 2233332332223346677666443321 7789999999
Q ss_pred HHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 128 QVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
+.+...+..... .-..+..+.|++.++|.|..+..+
T Consensus 199 ~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 199 DRLRFISEQENV---KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHHHHHHTTTC---CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 988887644331 223566889999999999865433
No 161
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.64 E-value=3e-07 Score=90.35 Aligned_cols=159 Identities=12% Similarity=0.100 Sum_probs=98.4
Q ss_pred CCChhHH---HHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh------
Q 038724 1 IENPKQF---YQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM------ 71 (483)
Q Consensus 1 vgr~~~~---~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i------ 71 (483)
||.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+++.. ...| ..+... ......+...+
T Consensus 29 vGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f---~~l~a~-~~~~~~ir~~~~~a~~~ 101 (447)
T 3pvs_A 29 IGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV---ERISAV-TSGVKEIREAIERARQN 101 (447)
T ss_dssp CSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE---EEEETT-TCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEEec-cCCHHHHHHHHHHHHHh
Confidence 5777777 788888888888889999999999999999999876 2222 122221 12222222222
Q ss_pred hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh-------------hccCChHHHHHHHHHHhcC
Q 038724 72 ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC-------------VDCFTPQESWQVFQMKVGN 136 (483)
Q Consensus 72 ~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~-------------l~~L~~~~a~~l~~~~~~~ 136 (483)
...+++.+|+||+++... ..+.+...+.. +...-|..||.+.... +++++.++..+++......
T Consensus 102 ~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 102 RNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp HHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred hhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 234678999999997552 33333333322 2222233355554322 8899999999999887644
Q ss_pred Ccc----cCCCCchhHHHHHHhHcCCchHHHHHHH
Q 038724 137 ETL----VSHPAIHKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 137 ~~~----~~~~~~~~~~~~i~~~c~g~Plal~~~~ 167 (483)
... ....-..+..+.+++.++|.+..+.-+.
T Consensus 181 ~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 181 KTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 110 0112234567888888999887665443
No 162
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=7.6e-08 Score=91.36 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=74.7
Q ss_pred CCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCC-EEecCCCCCcCCCCCCCCccchhhHh
Q 038724 341 MPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLK-YLDMDDHQQVMEEGNCQSDDAESLLK 418 (483)
Q Consensus 341 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~-~L~l~~n~~~~~p~~~~l~~~~~~~~ 418 (483)
+++|+.+++++|++...-+..|..+.+|+.+++..| +..++.. |.++++|+ .+++.+ .+..+ ...
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I-----------~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI-----------EFG 291 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE-----------CTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEE-----------chh
Confidence 678999999998754444567889999999999987 8888876 89999999 999988 43322 335
Q ss_pred hhccccccccceeeccCccc-----cCCCCCccccc
Q 038724 419 EMLCLEQLNIIRLTSCSLCS-----LCGLPTVQCLT 449 (483)
Q Consensus 419 ~l~~l~~L~~L~l~~~~l~~-----l~~l~~l~~l~ 449 (483)
.|..+++|+.+++++|.+.. +.++++|+.+.
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 68889999999999988754 44555665553
No 163
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.60 E-value=2e-07 Score=86.41 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=92.6
Q ss_pred CCChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC----
Q 038724 1 IENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK---- 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~---- 63 (483)
+|.++.+++|.+.+.. ...+.+.|+|++|+|||++|+++++.. ... .+.+..+.-..
T Consensus 20 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~~~~~ 93 (285)
T 3h4m_A 20 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVKKFIG 93 (285)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCCCSTT
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHHhccc
Confidence 6889999999888743 344679999999999999999999876 222 23333322111
Q ss_pred -ccchhHHh---hhcCCcEEEEEcCCCCcc----------------ccccccCCCC--CCCCCCEEEEecCChhhh----
Q 038724 64 -LETSQDDM---ILSTKKFLLLLDDLWETI----------------DLSKIGVPLP--SQKIVSKVVFTTHSEEVC---- 117 (483)
Q Consensus 64 -~~~~~~~i---~l~~~~~LlvlDdv~~~~----------------~~~~l~~~~~--~~~~gs~ilvTtR~~~~~---- 117 (483)
.......+ .....+.+|+|||++... .+..+...+. ....+..||.||......
T Consensus 94 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l 173 (285)
T 3h4m_A 94 EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAI 173 (285)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHH
Confidence 01111111 344667899999996431 0111111111 112346677777644222
Q ss_pred -----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCC-chHHHHHH
Q 038724 118 -----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGG-LPLALTIV 166 (483)
Q Consensus 118 -----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plal~~~ 166 (483)
++..+.++..+++........... ......++..+.| .|-.+..+
T Consensus 174 ~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 174 LRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE----DVNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp HSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT----TCCHHHHHHHCTTCCHHHHHHH
T ss_pred cCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC----cCCHHHHHHHcCCCCHHHHHHH
Confidence 778899999999988775443211 1225677777776 45455443
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.59 E-value=7e-07 Score=84.96 Aligned_cols=158 Identities=13% Similarity=0.059 Sum_probs=98.2
Q ss_pred CCChhHHHHHHHHHhc-----CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcC
Q 038724 1 IENPKQFYQVWRFLVK-----KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILST 75 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-----~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~ 75 (483)
||+++.++++..++.. ...+.|.|+|++|+|||++|+++++.. ...| +.+..+.......+...+....
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~ 105 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDLAAILTNLS 105 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHHHHHHHhcc
Confidence 6899999999888874 344578999999999999999998876 2222 2333332222333333334456
Q ss_pred CcEEEEEcCCCCccc--cccccCCCC------------------CCCCCCEEEEecCChhhh-------------hccCC
Q 038724 76 KKFLLLLDDLWETID--LSKIGVPLP------------------SQKIVSKVVFTTHSEEVC-------------VDCFT 122 (483)
Q Consensus 76 ~~~LlvlDdv~~~~~--~~~l~~~~~------------------~~~~gs~ilvTtR~~~~~-------------l~~L~ 122 (483)
+..+|+||+++.... ...+...+. ...+...+|.+|...... +.+++
T Consensus 106 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~ 185 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYK 185 (338)
T ss_dssp TTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcC
Confidence 778999999975521 111111110 001124555555432211 88899
Q ss_pred hHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHHH
Q 038724 123 PQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 123 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~ 167 (483)
.++..+++...+.... ..-..+..+.+++.+.|.|..+..+.
T Consensus 186 ~~e~~~il~~~~~~~~---~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 186 DSELALILQKAALKLN---KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp HHHHHHHHHHHHHHTT---CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999887764332 12234667888889999996665443
No 165
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.58 E-value=4.8e-08 Score=100.65 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=60.1
Q ss_pred cccceEEEEccccccccccC------CCCCCcccEEEecCCccccc----cchhhhcCCCccEEEccCCccCccCCc---
Q 038724 294 KWLGLRRMSLMNNQIKTLLN------TPSCPHLLTLFLNDNYLQDI----KNGFFQFMPCLKVLNLSYNRFLTKLPS--- 360 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~------~~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~--- 360 (483)
.+++|+.|++++|.+++... ...+++|++|++++|.+..+ .+..+..+++|++|++++|.+ ..+|.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHh
Confidence 45566666666666543311 02355666666666655421 122234556666666666542 22333
Q ss_pred ------------------------ccccCcCCCEEeccCCCCCccCccccCCcCCCEEecCCCCC
Q 038724 361 ------------------------GISKLVSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQ 401 (483)
Q Consensus 361 ------------------------~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~ 401 (483)
.+..+++|+.|+++++....+|..+..+++|++|++++|.+
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 34445555555555555566666677788888888888874
No 166
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.57 E-value=5.2e-08 Score=100.37 Aligned_cols=155 Identities=18% Similarity=0.157 Sum_probs=110.3
Q ss_pred ceEEEEcccccc-c--cccCC-CCCCcccEEEecCCccccc----cchhhhcCCCccEEEccCCccC----ccCCccccc
Q 038724 297 GLRRMSLMNNQI-K--TLLNT-PSCPHLLTLFLNDNYLQDI----KNGFFQFMPCLKVLNLSYNRFL----TKLPSGISK 364 (483)
Q Consensus 297 ~l~~l~l~~~~~-~--~~~~~-~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~----~~~p~~~~~ 364 (483)
+|+.|++.+|.. + .+... ..+++|++|+|++|.+... .+..+..+++|++|++++|.+. ..++..+..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 499999998862 1 11111 3689999999999987655 2334677899999999999764 344555678
Q ss_pred CcCCCEEeccCCCCCccCccccCCcCCCEEecCCCCCcCC----CC-CCC---Cc-------cchhhHhhhccccccccc
Q 038724 365 LVSLQHLDISFTSTLELPEELKALEKLKYLDMDDHQQVME----EG-NCQ---SD-------DAESLLKEMLCLEQLNII 429 (483)
Q Consensus 365 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~n~~~~~----p~-~~~---l~-------~~~~~~~~l~~l~~L~~L 429 (483)
+++|++|++++|.+..+|..+..+++|+.|+++++..... +. +.. ++ .....+..+..+++|+.|
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 8999999999999888988889999999999986432211 00 111 11 123445566778889999
Q ss_pred eeeccCcc------ccCCCCCcccccce
Q 038724 430 RLTSCSLC------SLCGLPTVQCLTSR 451 (483)
Q Consensus 430 ~l~~~~l~------~l~~l~~l~~l~l~ 451 (483)
++++|.+. .+..+++|+.|+++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 99988752 24677778777775
No 167
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=2.5e-07 Score=93.23 Aligned_cols=156 Identities=12% Similarity=0.141 Sum_probs=94.9
Q ss_pred CCChhHHHHHHHHHhc-----------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC
Q 038724 1 IENPKQFYQVWRFLVK-----------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-----------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~ 63 (483)
||+++.++++.+++.. ...+.+.|+|++|+|||++|+++++.. .+. ++.+..+....
T Consensus 42 iG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~~-~i~in~s~~~~ 115 (516)
T 1sxj_A 42 CGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GYD-ILEQNASDVRS 115 (516)
T ss_dssp CSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TCE-EEEECTTSCCC
T ss_pred cCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEeCCCcch
Confidence 6999999999999975 134689999999999999999999976 222 33444443322
Q ss_pred ccchhHHh--------------------hhcCCcEEEEEcCCCCccc-----cccccCCCCCCCCCCEEEEecCChh---
Q 038724 64 LETSQDDM--------------------ILSTKKFLLLLDDLWETID-----LSKIGVPLPSQKIVSKVVFTTHSEE--- 115 (483)
Q Consensus 64 ~~~~~~~i--------------------~l~~~~~LlvlDdv~~~~~-----~~~l~~~~~~~~~gs~ilvTtR~~~--- 115 (483)
...+...+ ...+++.+||||+++.... +..+...+.. . +..||+++....
T Consensus 116 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-~-~~~iIli~~~~~~~~ 193 (516)
T 1sxj_A 116 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-T-STPLILICNERNLPK 193 (516)
T ss_dssp HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-C-SSCEEEEESCTTSST
T ss_pred HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-c-CCCEEEEEcCCCCcc
Confidence 11111111 1236789999999975422 1222222111 1 233444433221
Q ss_pred hh----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch-HHHHHHH
Q 038724 116 VC----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP-LALTIVG 167 (483)
Q Consensus 116 ~~----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lal~~~~ 167 (483)
.. +++++.++..+.+...+...... -..+..+.|++.++|.+ -++..+.
T Consensus 194 l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~---i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 194 MRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK---LDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC---CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred chhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 11 77889999998887766443311 22345788999999855 4455443
No 168
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.55 E-value=1.9e-06 Score=79.17 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=82.2
Q ss_pred cCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-C--ccc---hhHHh---hhcCCcEEEEEcCCC
Q 038724 16 KKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL-K--LET---SQDDM---ILSTKKFLLLLDDLW 86 (483)
Q Consensus 16 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~-~--~~~---~~~~i---~l~~~~~LlvlDdv~ 86 (483)
....+.+.|+|++|+|||++|+++++.. .. .. +.+..+... . ... ....+ ....+..+|+|||++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~--~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid 134 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES---NF--PF-IKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIE 134 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH---TC--SE-EEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh---CC--CE-EEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChh
Confidence 3456789999999999999999999975 22 22 222222111 1 000 11111 334678999999986
Q ss_pred Cc------------cccccccCCCC---CCCCCCEEEEecCChhhh--------------hccCCh-HHHHHHHHHHhcC
Q 038724 87 ET------------IDLSKIGVPLP---SQKIVSKVVFTTHSEEVC--------------VDCFTP-QESWQVFQMKVGN 136 (483)
Q Consensus 87 ~~------------~~~~~l~~~~~---~~~~gs~ilvTtR~~~~~--------------l~~L~~-~~a~~l~~~~~~~ 136 (483)
.. ..+..+...+. .......||.||...... +.+++. ++..+++....
T Consensus 135 ~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-- 212 (272)
T 1d2n_A 135 RLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-- 212 (272)
T ss_dssp HHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT--
T ss_pred hhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC--
Confidence 42 01122222221 122234566677665321 555666 45555544321
Q ss_pred CcccCCCCchhHHHHHHhHcCC------chHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 038724 137 ETLVSHPAIHKPAKMVAKDCGG------LPLALTIVGRAMAYKKTPEEWKDAIEILMRS 189 (483)
Q Consensus 137 ~~~~~~~~~~~~~~~i~~~c~g------~Plal~~~~~~l~~~~~~~~w~~~~~~l~~~ 189 (483)
.-..+..+.+++.+.| ..-++.++-.... ......+..+++.+...
T Consensus 213 ------~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 213 ------NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-MDPEYRVRKFLALLREE 264 (272)
T ss_dssp ------CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-SCGGGHHHHHHHHHHHT
T ss_pred ------CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-hchHHHHHHHHHHHHHc
Confidence 1124456777877777 3344443333322 23445566655555443
No 169
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=1.4e-07 Score=90.47 Aligned_cols=164 Identities=12% Similarity=0.081 Sum_probs=97.0
Q ss_pred CCChhHHHHHHHHH-hcCCeEEEEEEcCCCCcHHHHHHHHHhhcccC-CCC--CCE--------------------EEEE
Q 038724 1 IENPKQFYQVWRFL-VKKDVGIIGLFGTGGVGKTTILKQINNRFCSE-RPG--FDV--------------------VIWV 56 (483)
Q Consensus 1 vgr~~~~~~l~~~l-~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~~--f~~--------------------~~~v 56 (483)
||+++.++.+.+++ ..+..+.+.|+|++|+||||+|+.++...... .+. +++ .+.+
T Consensus 17 vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (354)
T 1sxj_E 17 SHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI 96 (354)
T ss_dssp CSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEE
T ss_pred cCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEe
Confidence 68899999999998 66654459999999999999999998853111 110 110 1112
Q ss_pred EeCCCc--C---ccchhHHhh----h---------cCCcEEEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCChhh
Q 038724 57 VVSKEL--K---LETSQDDMI----L---------STKKFLLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSEEV 116 (483)
Q Consensus 57 ~~~~~~--~---~~~~~~~i~----l---------~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~~~ 116 (483)
..+... . .++....+. + .+++-++|+|++...+. ...+...+.....+..+|++|.+...
T Consensus 97 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 97 TPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp CCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred cHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 111111 1 122222221 1 33677999999976422 22232222222335677777655322
Q ss_pred h------------hccCChHHHHHHHHHHhcCCcccCCCCc-hhHHHHHHhHcCCchHHHHHHH
Q 038724 117 C------------VDCFTPQESWQVFQMKVGNETLVSHPAI-HKPAKMVAKDCGGLPLALTIVG 167 (483)
Q Consensus 117 ~------------l~~L~~~~a~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~c~g~Plal~~~~ 167 (483)
. +.+++.++..+.+...+..... .-. ++..+.|++.++|.+..+..+.
T Consensus 177 l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 177 IIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI---QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC---CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 7889999999999877643331 112 4567889999999987665443
No 170
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.50 E-value=4.3e-07 Score=85.93 Aligned_cols=154 Identities=12% Similarity=0.059 Sum_probs=94.1
Q ss_pred CCChhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh-------h
Q 038724 1 IENPKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM-------I 72 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i-------~ 72 (483)
||+++.++.+.+++..+.. +++.++|++|+|||++|+++++.. . ...+.++.+.. ....+...+ .
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~i~~~~~~~~~~~~ 101 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDFVRGPLTNFASAAS 101 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHHHHTHHHHHHHBCC
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHHHHHHHHHHHhhcc
Confidence 6889999999999997654 567778889999999999999876 1 22445554432 222222222 2
Q ss_pred hcCCcEEEEEcCCCCcc---ccccccCCCCCCCCCCEEEEecCChhhh------------hccCChHHHHHHH-------
Q 038724 73 LSTKKFLLLLDDLWETI---DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDCFTPQESWQVF------- 130 (483)
Q Consensus 73 l~~~~~LlvlDdv~~~~---~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~L~~~~a~~l~------- 130 (483)
..+++.++|+||++... ....+...+.......++|+||...... +++++.++-.+++
T Consensus 102 ~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l 181 (324)
T 3u61_B 102 FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRL 181 (324)
T ss_dssp CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 33578899999998654 2333332222222346777777654322 6778877743332
Q ss_pred HHHhcCCcccCCCCch-hHHHHHHhHcCCchHHHH
Q 038724 131 QMKVGNETLVSHPAIH-KPAKMVAKDCGGLPLALT 164 (483)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~~~~~i~~~c~g~Plal~ 164 (483)
...+.... ..-.. +..+.+++.++|.+..+.
T Consensus 182 ~~~~~~~~---~~~~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 182 TEICKHEG---IAIADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHHT---CCBSCHHHHHHHHHHTCSCTTHHH
T ss_pred HHHHHHcC---CCCCcHHHHHHHHHhCCCCHHHHH
Confidence 22222222 11123 667888888988776543
No 171
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.50 E-value=8.3e-08 Score=82.72 Aligned_cols=88 Identities=15% Similarity=0.249 Sum_probs=59.2
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEeCCCc-----------Ccc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERP----GFDVVIWVVVSKEL-----------KLE 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~f~~~~~v~~~~~~-----------~~~ 65 (483)
|||+++++++.+.+.....+.+.|+|++|+|||++|+++++....... .-...+++..+.-. ...
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (187)
T 2p65_A 25 IGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLK 104 (187)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHH
Confidence 699999999999998876778899999999999999999987622110 11234444332211 012
Q ss_pred chhHHhhhcCCcEEEEEcCCCCc
Q 038724 66 TSQDDMILSTKKFLLLLDDLWET 88 (483)
Q Consensus 66 ~~~~~i~l~~~~~LlvlDdv~~~ 88 (483)
.+...+...+++.+|||||++..
T Consensus 105 ~~~~~~~~~~~~~vl~iDe~~~l 127 (187)
T 2p65_A 105 SILKEVQDAEGQVVMFIDEIHTV 127 (187)
T ss_dssp HHHHHHHHTTTSEEEEETTGGGG
T ss_pred HHHHHHHhcCCceEEEEeCHHHh
Confidence 22222344467889999999654
No 172
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.50 E-value=3e-06 Score=79.74 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=90.5
Q ss_pred CCChhHHHHHHHHHhc------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-----
Q 038724 1 IENPKQFYQVWRFLVK------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK----- 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~----- 63 (483)
+|.++..++|.+.+.. ...+-|.|+|++|+|||++|+++++.. .+ ...+.+..+.-..
T Consensus 15 ~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~--~~~~~i~~~~l~~~~~g~ 89 (322)
T 1xwi_A 15 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSISSSDLVSKWLGE 89 (322)
T ss_dssp CSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---TS--CEEEEEECCSSCCSSCCS
T ss_pred cCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---CC--CcEEEEEhHHHHhhhhhH
Confidence 4777778888776631 233679999999999999999999865 11 1223344332111
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc-------------cccccC---CCCCCCCCCEEEEecCChhhh-------
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID-------------LSKIGV---PLPSQKIVSKVVFTTHSEEVC------- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~-------------~~~l~~---~~~~~~~gs~ilvTtR~~~~~------- 117 (483)
.......+ ....++.+|+||+++.... ...+.. .+.....+..||.||......
T Consensus 90 ~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rR 169 (322)
T 1xwi_A 90 SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRR 169 (322)
T ss_dssp CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhh
Confidence 11122222 3456789999999975411 011111 111112344555555433221
Q ss_pred ------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCc-hHHHHHHH
Q 038724 118 ------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGL-PLALTIVG 167 (483)
Q Consensus 118 ------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plal~~~~ 167 (483)
++..+.++-.+++......... .-.....+.+++.+.|. +-.+..+.
T Consensus 170 f~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 170 FEKRIYIPLPEPHARAAMFKLHLGTTQN---SLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTTCCB---CCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred cCeEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6667778888888777644321 11245677888888876 44455444
No 173
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=3.1e-07 Score=87.53 Aligned_cols=158 Identities=11% Similarity=0.129 Sum_probs=96.1
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-EEEEEEeCCCcCccchhHHh---h----
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFD-VVIWVVVSKELKLETSQDDM---I---- 72 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~~~v~~~~~~~~~~~~~~i---~---- 72 (483)
+|.+..++.|..++..+..+.+.++|++|+||||+|+.+++... . ..+. .+..+..+.......+.+.+ .
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~-~-~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~ 105 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY-G-KNYSNMVLELNASDDRGIDVVRNQIKDFASTRQ 105 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH-T-TSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCC
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc-C-CCccceEEEEcCcccccHHHHHHHHHHHHhhcc
Confidence 57888899999999988765699999999999999999998762 1 1111 12333333322332222222 1
Q ss_pred -hcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhh------------hhccCChHHHHHHHHHHhcCC
Q 038724 73 -LSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEV------------CVDCFTPQESWQVFQMKVGNE 137 (483)
Q Consensus 73 -l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~------------~l~~L~~~~a~~l~~~~~~~~ 137 (483)
..+.+-++|+|+++... ....+...+.......+++++|....- .+.+++.++..+.+...+...
T Consensus 106 ~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~ 185 (340)
T 1sxj_C 106 IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHE 185 (340)
T ss_dssp SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHc
Confidence 22457889999996542 222232222222234566666544321 167888888888887766333
Q ss_pred cccCCCCchhHHHHHHhHcCCchHHH
Q 038724 138 TLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 138 ~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
.. .-.++..+.+++.++|.+.-+
T Consensus 186 ~~---~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 186 KL---KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TC---CBCHHHHHHHHHHHTTCHHHH
T ss_pred CC---CCCHHHHHHHHHHcCCCHHHH
Confidence 21 122456778888999887643
No 174
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.47 E-value=9.8e-07 Score=83.68 Aligned_cols=153 Identities=9% Similarity=0.015 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHhcCCe-EEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCEEEEEEeC---C
Q 038724 4 PKQFYQVWRFLVKKDV-GIIGLFGTGGVGKTTILKQINNRFCSER-------------------PGFDVVIWVVVS---K 60 (483)
Q Consensus 4 ~~~~~~l~~~l~~~~~-~~v~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~~f~~~~~v~~~---~ 60 (483)
++..+.+.+.+..++. +.+.++|++|+|||++|+.+++...... .+++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 4567778888877654 4699999999999999999988762111 1233 3344432 2
Q ss_pred CcCcc---chhHHh---hhcCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh------------hcc
Q 038724 61 ELKLE---TSQDDM---ILSTKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC------------VDC 120 (483)
Q Consensus 61 ~~~~~---~~~~~i---~l~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~------------l~~ 120 (483)
..... ++.+.+ ...+++.++|+|+++... ....+...+.....+..+|++|.+..-. +.+
T Consensus 87 ~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~ 166 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAP 166 (334)
T ss_dssp SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCC
Confidence 23333 222232 234678899999997653 2334444444334456666666554322 888
Q ss_pred CChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHH
Q 038724 121 FTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTI 165 (483)
Q Consensus 121 L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~ 165 (483)
+++++..+.+.... .-..+.++.+++.++|.|..+..
T Consensus 167 ~~~~~~~~~L~~~~--------~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 167 PPEQYAVTWLSREV--------TMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp CCHHHHHHHHHHHC--------CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred CCHHHHHHHHHHhc--------CCCHHHHHHHHHHcCCCHHHHHH
Confidence 99999998887765 11234567899999999976643
No 175
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.47 E-value=1.7e-06 Score=82.76 Aligned_cols=158 Identities=15% Similarity=0.060 Sum_probs=91.6
Q ss_pred CCChhHHHHHHHHHhc------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc----
Q 038724 1 IENPKQFYQVWRFLVK------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL---- 64 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~---- 64 (483)
+|.++.+++|.+.+.. ...+.|.|+|++|+|||++|+++++.. .. ..+.+..+.-...
T Consensus 87 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~~~g~ 160 (357)
T 3d8b_A 87 AGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSKWVGE 160 (357)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCSSTTH
T ss_pred CChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhccccch
Confidence 5888888988888742 345689999999999999999999876 22 2334444332211
Q ss_pred -cchhHHh---hhcCCcEEEEEcCCCCccc-------------cccccCCC---C-CCCCCCEEEEecCChhhh------
Q 038724 65 -ETSQDDM---ILSTKKFLLLLDDLWETID-------------LSKIGVPL---P-SQKIVSKVVFTTHSEEVC------ 117 (483)
Q Consensus 65 -~~~~~~i---~l~~~~~LlvlDdv~~~~~-------------~~~l~~~~---~-~~~~gs~ilvTtR~~~~~------ 117 (483)
......+ ....++.+|+||+++.... ...+...+ . ....+..||.||......
T Consensus 161 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~ 240 (357)
T 3d8b_A 161 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR 240 (357)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh
Confidence 1111111 3346678999999953210 11111111 1 112234555566443221
Q ss_pred -------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCC-chHHHHHHH
Q 038724 118 -------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGG-LPLALTIVG 167 (483)
Q Consensus 118 -------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plal~~~~ 167 (483)
+...+.++..+++...+..... .-..+..+.+++.+.| .+-.+..+.
T Consensus 241 Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 241 RLVKRLYIPLPEASARKQIVINLMSKEQC---CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHHTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hCceEEEeCCcCHHHHHHHHHHHHhhcCC---CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6667777878888776643321 1124567788888887 455555554
No 176
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.46 E-value=1.7e-07 Score=88.05 Aligned_cols=134 Identities=9% Similarity=0.080 Sum_probs=76.1
Q ss_pred CCChhHHHHHHHHHh---------------cCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC--EEEEEEeCCCcC
Q 038724 1 IENPKQFYQVWRFLV---------------KKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFD--VVIWVVVSKELK 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~---------------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~--~~~~v~~~~~~~ 63 (483)
||.++..+.|.+.+. ......+.|+|++|+|||++|+++++.... ..... ..+.+..+.-..
T Consensus 34 ~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~~l~~ 112 (309)
T 3syl_A 34 IGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRDDLVG 112 (309)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGGGTCC
T ss_pred cChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHHHhhh
Confidence 578888888776654 234457999999999999999988877621 11111 223333221110
Q ss_pred -----ccchhHHhhhcCCcEEEEEcCCCCc-----------cccccccCCCCCCCCCCEEEEecCChhh----------h
Q 038724 64 -----LETSQDDMILSTKKFLLLLDDLWET-----------IDLSKIGVPLPSQKIVSKVVFTTHSEEV----------C 117 (483)
Q Consensus 64 -----~~~~~~~i~l~~~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~ilvTtR~~~~----------~ 117 (483)
.......+....+..+|+||+++.. .....+...+.....+..+|+||..... .
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 192 (309)
T 3syl_A 113 QYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFR 192 (309)
T ss_dssp SSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHH
T ss_pred hcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHH
Confidence 0000111111124569999999733 1223333333333345677777754321 1
Q ss_pred --------hccCChHHHHHHHHHHhc
Q 038724 118 --------VDCFTPQESWQVFQMKVG 135 (483)
Q Consensus 118 --------l~~L~~~~a~~l~~~~~~ 135 (483)
+++++.++..+++...+.
T Consensus 193 ~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 193 SRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 778888888888877664
No 177
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.45 E-value=4.6e-07 Score=84.27 Aligned_cols=42 Identities=5% Similarity=0.166 Sum_probs=36.8
Q ss_pred CChhHHHHHHHHHhc----CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 2 ENPKQFYQVWRFLVK----KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 2 gr~~~~~~l~~~l~~----~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||++++++|...+.. +..+.+.|+|++|+|||++++++++..
T Consensus 24 ~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 24 SQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999988877754 566789999999999999999999887
No 178
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.45 E-value=1.4e-06 Score=82.25 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=92.4
Q ss_pred CCChhHHHHHHHHHh----------c--CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-----C
Q 038724 1 IENPKQFYQVWRFLV----------K--KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL-----K 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~----------~--~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~-----~ 63 (483)
+|.++.+++|.+.+. . ...+-|.|+|++|+|||++|+++++.. ... .+.+..+.-. .
T Consensus 21 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~~l~~~~~g~ 94 (322)
T 3eie_A 21 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSSDLVSKWMGE 94 (322)
T ss_dssp CSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHHHHHTTTGGG
T ss_pred cChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchHHHhhcccch
Confidence 578888888888872 1 123579999999999999999999976 222 2333332110 0
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc-------------ccccc---CCCCCCCCCCEEEEecCChhhh-------
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID-------------LSKIG---VPLPSQKIVSKVVFTTHSEEVC------- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~-------------~~~l~---~~~~~~~~gs~ilvTtR~~~~~------- 117 (483)
.......+ ....++.+|+||+++.... ...+. ..+.....+..||.||......
T Consensus 95 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~R 174 (322)
T 3eie_A 95 SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR 174 (322)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcc
Confidence 11111122 3456778999999974321 11111 1111123345666666554322
Q ss_pred ------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCC-chHHHHHHH
Q 038724 118 ------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGG-LPLALTIVG 167 (483)
Q Consensus 118 ------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plal~~~~ 167 (483)
++..+.++-.+++...+.... ..-.....+.+++.+.| .+-.+..+.
T Consensus 175 f~~~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 175 FERRIYIPLPDLAARTTMFEINVGDTP---CVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTTCC---CCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCeEEEeCCCCHHHHHHHHHHHhccCC---CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 667788888888887775433 11224456788888876 444554444
No 179
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.41 E-value=5e-08 Score=100.54 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=8.9
Q ss_pred hccccccccceeecc
Q 038724 420 MLCLEQLNIIRLTSC 434 (483)
Q Consensus 420 l~~l~~L~~L~l~~~ 434 (483)
+..+++|+.|++++|
T Consensus 310 ~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDY 324 (594)
T ss_dssp HTTCTTCCEEEEEGG
T ss_pred HhcCCCcCEEeCcCc
Confidence 445566666666655
No 180
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.40 E-value=8.3e-06 Score=80.34 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=90.6
Q ss_pred CCChhHHHHHHHHHh------------cCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc-----C
Q 038724 1 IENPKQFYQVWRFLV------------KKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL-----K 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~------------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~-----~ 63 (483)
+|.++..+.|.+.+. ....+.|.|+|++|+|||++|+++++.. .+ ...+.+..+.-. .
T Consensus 137 ~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~~--~~~~~v~~~~l~~~~~g~ 211 (444)
T 2zan_A 137 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSISSSDLVSKWLGE 211 (444)
T ss_dssp CSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---CS--SEEEEECCC---------
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---CC--CCEEEEeHHHHHhhhcch
Confidence 577888888887773 1234679999999999999999999875 11 112222221110 0
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc-------------cccccCCCCC---CCCCCEEEEecCChhhh-------
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID-------------LSKIGVPLPS---QKIVSKVVFTTHSEEVC------- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~---~~~gs~ilvTtR~~~~~------- 117 (483)
.......+ .....+.+|+||+++.... ...+...+.. ...+..||.||......
T Consensus 212 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR 291 (444)
T 2zan_A 212 SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRR 291 (444)
T ss_dssp CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhh
Confidence 11112222 3346788999999975411 1122222221 23456666666544322
Q ss_pred ------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCc-hHHHHHHH
Q 038724 118 ------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGL-PLALTIVG 167 (483)
Q Consensus 118 ------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plal~~~~ 167 (483)
+...+.++-.+++......... .-.....+.|++.+.|. +-.+..+.
T Consensus 292 f~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 292 FEKRIYIPLPEAHARAAMFRLHLGSTQN---SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTTSCE---ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cceEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566777777788777644321 11235567888888874 44554444
No 181
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.36 E-value=4.1e-06 Score=76.41 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=85.7
Q ss_pred CCChhHHHHHHHHHh---c---------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCcc---
Q 038724 1 IENPKQFYQVWRFLV---K---------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLE--- 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~---~---------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~--- 65 (483)
+|.++..+++.+.+. . ...+.+.|+|++|+|||++|+++++.. ... .+.+..+.-....
T Consensus 9 ~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 9 AGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVEVIGGL 82 (262)
T ss_dssp CSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSSSSTTH
T ss_pred CCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHhhccCh
Confidence 577777777766543 1 233568899999999999999999976 222 2334433221100
Q ss_pred --chhHHh---hhcCCcEEEEEcCCCCcc--------------c---cccccCCCCC--CCCCCEEEEecCChhhh----
Q 038724 66 --TSQDDM---ILSTKKFLLLLDDLWETI--------------D---LSKIGVPLPS--QKIVSKVVFTTHSEEVC---- 117 (483)
Q Consensus 66 --~~~~~i---~l~~~~~LlvlDdv~~~~--------------~---~~~l~~~~~~--~~~gs~ilvTtR~~~~~---- 117 (483)
.....+ .....+.+|+||+++... . +..+...+.. ...+..+|.||......
T Consensus 83 ~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l 162 (262)
T 2qz4_A 83 GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGAL 162 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGG
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHH
Confidence 011111 334567999999997541 0 1111111111 12245666666443311
Q ss_pred -----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH-HHHHH
Q 038724 118 -----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL-ALTIV 166 (483)
Q Consensus 118 -----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-al~~~ 166 (483)
++..+.++-.+++...+..... ........+.+++.+.|.+- .+..+
T Consensus 163 ~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 163 MRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp GSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred hcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 6677888888888877643321 11112234678888877653 44433
No 182
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.36 E-value=1.3e-07 Score=97.49 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=77.0
Q ss_pred ccccceEEEEccccccccccCC---CCCCcccEEEecCC-ccccc-cchhhhcCCCccEEEccCCccCccCCccc----c
Q 038724 293 LKWLGLRRMSLMNNQIKTLLNT---PSCPHLLTLFLNDN-YLQDI-KNGFFQFMPCLKVLNLSYNRFLTKLPSGI----S 363 (483)
Q Consensus 293 ~~~~~l~~l~l~~~~~~~~~~~---~~~~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~~----~ 363 (483)
..+++|+.|++++|.++..... ..+++|++|++++| .+... .+..+..+++|++|++++|.+.+..+..+ .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4567899999999987654321 25789999999998 55442 33445679999999999997544333333 3
Q ss_pred cCcCCCEEeccCCCCCccC-----ccccCCcCCCEEecCCCC
Q 038724 364 KLVSLQHLDISFTSTLELP-----EELKALEKLKYLDMDDHQ 400 (483)
Q Consensus 364 ~l~~L~~L~l~~~~i~~lp-----~~~~~l~~L~~L~l~~n~ 400 (483)
.+++|++|++++|. ..++ .-+..+++|++|++++|.
T Consensus 182 ~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 182 TYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp TCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred cCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 66799999999987 3332 223557999999999983
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.36 E-value=3.1e-07 Score=90.36 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCC-eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh----------hhcC
Q 038724 7 FYQVWRFLVKKD-VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM----------ILST 75 (483)
Q Consensus 7 ~~~l~~~l~~~~-~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i----------~l~~ 75 (483)
...+.......+ ...+.|+|++|+||||||+++++........ ..+++++...- ..++...+ ....
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 193 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITSEKF--LNDLVDSMKEGKLNEFREKYRK 193 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEHHHH--HHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHHHH--HHHHHHHHHcccHHHHHHHhcC
Confidence 334444444433 5689999999999999999999876211111 22455654321 11222222 1222
Q ss_pred CcEEEEEcCCCCccc----cccccCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHH
Q 038724 76 KKFLLLLDDLWETID----LSKIGVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQ 131 (483)
Q Consensus 76 ~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~ 131 (483)
+..+|+|||++.... .+.+...+.. ...|..||+||...... +++++.++..+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 677999999965432 1222222211 13467888888763211 67788888888887
Q ss_pred HHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 132 MKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
..+..... .-..+..+.|++.++|.+..+.-+
T Consensus 274 ~~~~~~~~---~i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 274 KMLEIEHG---ELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHTC---CCCTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHcCC---CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 76643221 122345778888888888665443
No 184
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.34 E-value=2.4e-06 Score=82.92 Aligned_cols=158 Identities=12% Similarity=0.082 Sum_probs=88.1
Q ss_pred CCChhHHHHHHHHHhc------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-----
Q 038724 1 IENPKQFYQVWRFLVK------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK----- 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~----- 63 (483)
||.+..++.|.+++.. ...+.|.|+|++|+|||++|+++++.. ... .+.+..+.-..
T Consensus 118 iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~---~~~v~~~~l~~~~~g~ 191 (389)
T 3vfd_A 118 AGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NAT---FFNISAASLTSKYVGE 191 (389)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCE---EEEECSCCC-------
T ss_pred CCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCc---EEEeeHHHhhccccch
Confidence 6889999999888832 234689999999999999999999876 221 23333222111
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc-------------cccccCCC---C-CCCCCCEEEEecCChhhh------
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID-------------LSKIGVPL---P-SQKIVSKVVFTTHSEEVC------ 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~-------------~~~l~~~~---~-~~~~gs~ilvTtR~~~~~------ 117 (483)
.......+ .....+.+|+||+++.... ...+...+ . .......||.||......
T Consensus 192 ~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~ 271 (389)
T 3vfd_A 192 GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR 271 (389)
T ss_dssp CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc
Confidence 11111112 3345668999999964410 00111111 1 111234555555443221
Q ss_pred -------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH-HHHHHH
Q 038724 118 -------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL-ALTIVG 167 (483)
Q Consensus 118 -------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-al~~~~ 167 (483)
+...+.++..+++...+.... ..-..+..+.+++.+.|..- ++..+.
T Consensus 272 R~~~~i~i~~p~~~~r~~il~~~~~~~~---~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 272 RFIKRVYVSLPNEETRLLLLKNLLCKQG---SPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTSC---CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcceEEEcCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 566777888888877664432 12223456778888877543 444443
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.33 E-value=9.4e-06 Score=75.55 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=89.7
Q ss_pred CCChhHHHHHHHHHhc------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-----
Q 038724 1 IENPKQFYQVWRFLVK------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK----- 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~----- 63 (483)
+|.++.++.+.+.+.. ...+.+.|+|++|+|||++|+++++.. ... .+.+..+.-..
T Consensus 24 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~~~~~~ 97 (297)
T 3b9p_A 24 AGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTSKYVGD 97 (297)
T ss_dssp CCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSSSSCSC
T ss_pred CChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhhcccch
Confidence 6888888988887742 234689999999999999999999876 222 23344332211
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCcccc-------------ccc---cCCCCCC--CCCCEEEEecCChhhh-----
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETIDL-------------SKI---GVPLPSQ--KIVSKVVFTTHSEEVC----- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~~-------------~~l---~~~~~~~--~~gs~ilvTtR~~~~~----- 117 (483)
.......+ ....++.+|++|+++....- ..+ ...++.. +.+..|+.||......
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 11111111 34567889999999654110 011 1111111 1234566666654221
Q ss_pred --------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchH-HHHHHH
Q 038724 118 --------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPL-ALTIVG 167 (483)
Q Consensus 118 --------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-al~~~~ 167 (483)
+...+.++..+++........ ..-..+..+.+++.+.|.+- ++..+.
T Consensus 178 ~R~~~~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 178 RRFTKRVYVSLPDEQTRELLLNRLLQKQG---SPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHCCEEEECCCCCHHHHHHHHHHHHGGGS---CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hhCCeEEEeCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555667777777766654322 11223456778888888775 444443
No 186
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.30 E-value=2.8e-06 Score=82.58 Aligned_cols=114 Identities=12% Similarity=0.111 Sum_probs=74.9
Q ss_pred hcccCccccccccceEEEEccccccccccCC-CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCccc
Q 038724 284 LRDVVPSDALKWLGLRRMSLMNNQIKTLLNT-PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGI 362 (483)
Q Consensus 284 l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 362 (483)
+..+-...+..+.+|+.+++.+|.++.++.. ..+.+|+.+.+..+ ++.+....|..+++|+.+++..+ +...-...|
T Consensus 168 l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF 245 (401)
T 4fdw_A 168 LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF 245 (401)
T ss_dssp CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT
T ss_pred ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc
Confidence 3344445566777888888888888777655 23577888888744 67777777888888888888765 333333344
Q ss_pred ccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCCC
Q 038724 363 SKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQQ 401 (483)
Q Consensus 363 ~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~ 401 (483)
.+ .+|+.+.+ .+.+..++.. |.++++|+.+++.+|..
T Consensus 246 ~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 246 RE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp TT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred cc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccc
Confidence 44 66777777 3446666544 66777777777766654
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.29 E-value=2.8e-06 Score=81.82 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=33.7
Q ss_pred CCChhHHHH---HHHHHhcCCe--EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQ---VWRFLVKKDV--GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~---l~~~l~~~~~--~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||++...+. +.+.+..+.. +.+.|+|++|+|||++|+++++..
T Consensus 47 vG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 47 VGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp ESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 577777665 4555555433 589999999999999999999987
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.29 E-value=1.6e-06 Score=82.81 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=90.5
Q ss_pred CCChhHHHHHHHHHhc------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC----c-C
Q 038724 1 IENPKQFYQVWRFLVK------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE----L-K 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~----~-~ 63 (483)
+|.++.++.|.+++.. ...+-|.|+|++|+|||++|+++++.. ... .+.+..+.- . .
T Consensus 54 ~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~~l~~~~~g~ 127 (355)
T 2qp9_X 54 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSSDLVSKWMGE 127 (355)
T ss_dssp CCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHHHHHSCC---
T ss_pred CCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHHHHhhhhcch
Confidence 5788888888887731 123468999999999999999999977 222 223332210 0 0
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc-------------cccccCC---CCCCCCCCEEEEecCChhhh-------
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID-------------LSKIGVP---LPSQKIVSKVVFTTHSEEVC------- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~-------------~~~l~~~---~~~~~~gs~ilvTtR~~~~~------- 117 (483)
.......+ ....++.+|+||+++.... ...+... +.....+..||.||......
T Consensus 128 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR 207 (355)
T 2qp9_X 128 SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR 207 (355)
T ss_dssp CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcc
Confidence 11112222 3446789999999975421 1111111 11112345556566544221
Q ss_pred ------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCC-chHHHHHHH
Q 038724 118 ------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGG-LPLALTIVG 167 (483)
Q Consensus 118 ------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plal~~~~ 167 (483)
+...+.++-.+++......... .-.....+.|++.+.| .+-.|..+.
T Consensus 208 f~~~i~i~~P~~~~r~~il~~~l~~~~~---~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 208 FERRIYIPLPDLAARTTMFEINVGDTPS---VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCEEEEeCCcCHHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6667788888888877754331 1124456788888887 444555444
No 189
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.29 E-value=5.6e-07 Score=74.13 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=64.1
Q ss_pred CCChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcCCcE
Q 038724 1 IENPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILSTKKF 78 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~~~~ 78 (483)
||+...+.++.+.+.. .....|.|+|++|+|||++|+++++........| + +..+...+.......+... ...
T Consensus 4 iG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~~~~~~~~~~a-~~g 78 (145)
T 3n70_A 4 IGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNAPQLNDFIALA-QGG 78 (145)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTSSCHHHHHHHH-TTS
T ss_pred eeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcchhhhcHHHHc-CCc
Confidence 6889999999888753 2334688999999999999999998652222222 2 5544433322222222222 335
Q ss_pred EEEEcCCCCccc--cccccCCCCCCCCCCEEEEecCCh
Q 038724 79 LLLLDDLWETID--LSKIGVPLPSQKIVSKVVFTTHSE 114 (483)
Q Consensus 79 LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~ 114 (483)
.|+||+++.... ...+...+.......++|+||...
T Consensus 79 ~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 79 TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp CEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred EEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 689999975532 222222222222345677666543
No 190
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.24 E-value=3.9e-07 Score=87.08 Aligned_cols=140 Identities=17% Similarity=0.127 Sum_probs=88.1
Q ss_pred cccccccceEEEEccccccccccCCCCCCcccEEEecCCccccccchhhh--cCCCccEEEccCC--ccCcc-----CCc
Q 038724 290 SDALKWLGLRRMSLMNNQIKTLLNTPSCPHLLTLFLNDNYLQDIKNGFFQ--FMPCLKVLNLSYN--RFLTK-----LPS 360 (483)
Q Consensus 290 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n--~~~~~-----~p~ 360 (483)
.....+++|+.|++.+|.-..+++ ..+++|+.|++..+.+.......+. .+++|+.|+|+.+ ...+. +..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 444566789999998874223333 2478899999988876543322233 6889999988632 11111 111
Q ss_pred cc--ccCcCCCEEeccCCCCCc-cCccc---cCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeecc
Q 038724 361 GI--SKLVSLQHLDISFTSTLE-LPEEL---KALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSC 434 (483)
Q Consensus 361 ~~--~~l~~L~~L~l~~~~i~~-lp~~~---~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~ 434 (483)
.+ ..+++|++|++++|.+.. .+..+ ..+++|++|+|+.|.+... .....+..+..+++|+.|++++|
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~-------G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE-------GARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH-------HHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH-------HHHHHHhhcccCCcceEEECCCC
Confidence 22 247889999998888653 12222 3578899999998875421 00123445567889999999988
Q ss_pred Ccc
Q 038724 435 SLC 437 (483)
Q Consensus 435 ~l~ 437 (483)
.+.
T Consensus 318 ~i~ 320 (362)
T 2ra8_A 318 YLS 320 (362)
T ss_dssp BCC
T ss_pred cCC
Confidence 763
No 191
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.21 E-value=1.1e-06 Score=75.74 Aligned_cols=114 Identities=13% Similarity=0.020 Sum_probs=59.5
Q ss_pred CCCcccEEEecCC-cccccc----chhhhcCCCccEEEccCCccCcc----CCcccccCcCCCEEeccCCCCCc-----c
Q 038724 316 SCPHLLTLFLNDN-YLQDIK----NGFFQFMPCLKVLNLSYNRFLTK----LPSGISKLVSLQHLDISFTSTLE-----L 381 (483)
Q Consensus 316 ~~~~L~~L~l~~n-~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~~~i~~-----l 381 (483)
..++|++|+|++| .+.... ...+...++|++|+|++|.+... +...+...++|++|+|++|.|+. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3455666666665 544311 11234455666666666653221 22334444566677777666654 3
Q ss_pred CccccCCcCCCEEec--CCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCc
Q 038724 382 PEELKALEKLKYLDM--DDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSL 436 (483)
Q Consensus 382 p~~~~~l~~L~~L~l--~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l 436 (483)
...+...++|++|+| ++|.+... ......+.+...++|+.|++++|.+
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~-------g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNN-------VEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHH-------HHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHH-------HHHHHHHHHHhCCCcCEEeccCCCC
Confidence 444555666777777 55654311 0011233444556677777766665
No 192
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=9e-07 Score=80.26 Aligned_cols=63 Identities=30% Similarity=0.329 Sum_probs=39.6
Q ss_pred hcCCCccEEEccCCccCc--cCCcccccCcCCCEEeccCCCCCccCccccCCc--CCCEEecCCCCCc
Q 038724 339 QFMPCLKVLNLSYNRFLT--KLPSGISKLVSLQHLDISFTSTLELPEELKALE--KLKYLDMDDHQQV 402 (483)
Q Consensus 339 ~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~n~~~ 402 (483)
..+++|+.|+|++|++.+ .+|..+..+++|++|+|++|.+..+. .+..++ +|+.|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 456667777777776444 34455566777777777777766652 344444 7777777777754
No 193
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=4.3e-06 Score=77.80 Aligned_cols=132 Identities=13% Similarity=0.031 Sum_probs=83.6
Q ss_pred CChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCEEEEEEeCC-CcCc---cchhHHh---hh
Q 038724 2 ENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSER-PGFDVVIWVVVSK-ELKL---ETSQDDM---IL 73 (483)
Q Consensus 2 gr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~~f~~~~~v~~~~-~~~~---~~~~~~i---~l 73 (483)
|-++.++.+.+.+.++..+.+.++|++|+|||++|..+++....-. .+.+. .++..++ .... +++.... ..
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHHHHHHHHHTSCCS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHHHHHHHHHhhccc
Confidence 4577888999999887778999999999999999999987521111 23443 4455443 3433 3333333 23
Q ss_pred cCCcEEEEEcCCCCcc--ccccccCCCCCCCCCCEEEEecCChhhh----------hccCChHHHHHHHHHHh
Q 038724 74 STKKFLLLLDDLWETI--DLSKIGVPLPSQKIVSKVVFTTHSEEVC----------VDCFTPQESWQVFQMKV 134 (483)
Q Consensus 74 ~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~~~----------l~~L~~~~a~~l~~~~~ 134 (483)
.+++-++|+|+++... ..+.+...+....+.+.+|++|.+..-. +.++++++..+.+....
T Consensus 80 ~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHHHHHHHHHH
T ss_pred cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHHHHHHHHHHh
Confidence 4667899999997653 3444544443334456666665433211 77888888888877665
No 194
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.14 E-value=2.2e-06 Score=81.84 Aligned_cols=135 Identities=17% Similarity=0.148 Sum_probs=89.3
Q ss_pred CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccc--cCcCCCEEeccCC--C------CCccCcc
Q 038724 315 PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGIS--KLVSLQHLDISFT--S------TLELPEE 384 (483)
Q Consensus 315 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~l~~~--~------i~~lp~~ 384 (483)
..+++|+.|.+++|.-..+++ + .+++|+.|++..|.+.......+. .+++|++|+|+.+ . +..+...
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 457899999999883223333 3 378999999998864333223343 6899999998632 1 2222222
Q ss_pred c--cCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCccc---------cCCCCCcccccceee
Q 038724 385 L--KALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSLCS---------LCGLPTVQCLTSRRL 453 (483)
Q Consensus 385 ~--~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l~~---------l~~l~~l~~l~l~~~ 453 (483)
+ ..+++|++|++++|.+... ..........+++|++|+++.|.+.. +..+++|+.|+++.|
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~--------~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNV--------VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHH--------HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HhcCCCCCcCEEeCCCCCCchH--------HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 2 3579999999999885411 00112222468999999999998743 244688999999888
Q ss_pred eeeeeec
Q 038724 454 NLEVEDW 460 (483)
Q Consensus 454 ~~~~~~~ 460 (483)
.++....
T Consensus 318 ~i~d~~~ 324 (362)
T 2ra8_A 318 YLSDEMK 324 (362)
T ss_dssp BCCHHHH
T ss_pred cCCHHHH
Confidence 7774433
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.12 E-value=1.2e-05 Score=74.83 Aligned_cols=152 Identities=13% Similarity=0.125 Sum_probs=84.6
Q ss_pred CCChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC------
Q 038724 1 IENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE------ 61 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~------ 61 (483)
+|.++.+++|.+++.. ...+.|.|+|++|+|||++|+++++.. ... .+.+..+.-
T Consensus 18 ~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~---~i~v~~~~l~~~~~g 91 (301)
T 3cf0_A 18 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN---FISIKGPELLTMWFG 91 (301)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE---EEEECHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC---EEEEEhHHHHhhhcC
Confidence 5778888888877652 234679999999999999999999876 221 223321110
Q ss_pred cCccchhHHh--hhcCCcEEEEEcCCCCccc----------------cccccCCCC--CCCCCCEEEEecCChhhh----
Q 038724 62 LKLETSQDDM--ILSTKKFLLLLDDLWETID----------------LSKIGVPLP--SQKIVSKVVFTTHSEEVC---- 117 (483)
Q Consensus 62 ~~~~~~~~~i--~l~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtR~~~~~---- 117 (483)
.....+..-+ .....+.++++|+++.... ...+...+. ....+..||.||......
T Consensus 92 ~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al 171 (301)
T 3cf0_A 92 ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI 171 (301)
T ss_dssp TCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGG
T ss_pred chHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHH
Confidence 0001111111 3345689999999973210 111111111 112345666666544221
Q ss_pred -----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHH
Q 038724 118 -----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLA 162 (483)
Q Consensus 118 -----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 162 (483)
+...+.++-.+++........... ....+.+++.+.|.|-+
T Consensus 172 ~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~----~~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 172 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK----DVDLEFLAKMTNGFSGA 223 (301)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCS----SCCHHHHHHTCSSCCHH
T ss_pred hcCCccceEEecCCcCHHHHHHHHHHHHccCCCCc----cchHHHHHHHcCCCCHH
Confidence 566777777788877764433111 11245666677777644
No 196
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.11 E-value=3.3e-06 Score=90.37 Aligned_cols=132 Identities=20% Similarity=0.303 Sum_probs=76.2
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCC--CC--CCEEEEEEeCCCc-------C----cc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSER--PG--FDVVIWVVVSKEL-------K----LE 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~~--f~~~~~v~~~~~~-------~----~~ 65 (483)
|||++++.++.+.+.....+.+.++|++|+|||++|+.+++...... .. -..+++++.+.-. . +.
T Consensus 173 iGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~ 252 (854)
T 1qvr_A 173 IGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLK 252 (854)
T ss_dssp CSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHH
Confidence 79999999999999887667789999999999999999998762111 11 1223444332211 0 12
Q ss_pred chhHHhhhcCCcEEEEEcCCCCccc-------c---ccccCCCCCCCCCCEEEE-ecCChh--hh-------------hc
Q 038724 66 TSQDDMILSTKKFLLLLDDLWETID-------L---SKIGVPLPSQKIVSKVVF-TTHSEE--VC-------------VD 119 (483)
Q Consensus 66 ~~~~~i~l~~~~~LlvlDdv~~~~~-------~---~~l~~~~~~~~~gs~ilv-TtR~~~--~~-------------l~ 119 (483)
.+...+...+++.+|+||+++.... + ..+...+ ..+ +..+|. ||.... +. ++
T Consensus 253 ~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~~-~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~ 330 (854)
T 1qvr_A 253 AVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-ARG-ELRLIGATTLDEYREIEKDPALERRFQPVYVD 330 (854)
T ss_dssp HHHHHHHTTCSSEEEEECCC-------------------HHHH-HTT-CCCEEEEECHHHHHHHTTCTTTCSCCCCEEEC
T ss_pred HHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hCC-CeEEEEecCchHHhhhccCHHHHhCCceEEeC
Confidence 2222223345789999999975421 1 1111111 112 233444 443322 11 78
Q ss_pred cCChHHHHHHHHHHh
Q 038724 120 CFTPQESWQVFQMKV 134 (483)
Q Consensus 120 ~L~~~~a~~l~~~~~ 134 (483)
+++.++..+++....
T Consensus 331 ~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 331 EPTVEETISILRGLK 345 (854)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhh
Confidence 889999999887543
No 197
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.09 E-value=4.4e-06 Score=76.54 Aligned_cols=43 Identities=23% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCChhHHHHHHHHHhc------------CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK------------KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~------------~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||.++.++++.+.+.. ...+-+.|+|++|+|||++|+++++..
T Consensus 14 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 14 AGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 5777777777766541 123347899999999999999999876
No 198
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.06 E-value=3.4e-05 Score=76.51 Aligned_cols=130 Identities=22% Similarity=0.228 Sum_probs=74.5
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCC--CCC-C-EEEEEEeCC----C--cCccchhHH
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSER--PGF-D-VVIWVVVSK----E--LKLETSQDD 70 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~--~~f-~-~~~~v~~~~----~--~~~~~~~~~ 70 (483)
|||+++++++.+.+......-+.|+|++|+|||++|+.+++...... ... . ..+.++.+. . .....+...
T Consensus 183 iGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~ 262 (468)
T 3pxg_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDE 262 (468)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHH
T ss_pred cCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHH
Confidence 79999999999999876666788999999999999999998752110 000 1 122223221 1 112233333
Q ss_pred hhhcCCcEEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhh----h-------------hccCChHHHHHHHHHH
Q 038724 71 MILSTKKFLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEV----C-------------VDCFTPQESWQVFQMK 133 (483)
Q Consensus 71 i~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~----~-------------l~~L~~~~a~~l~~~~ 133 (483)
+ ...++.++++| ...+....+...+. .+ ..++|.+|..... . +++.+.++..+++...
T Consensus 263 ~-~~~~~~iLfiD--~~~~a~~~L~~~L~-~g-~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~ 337 (468)
T 3pxg_A 263 I-RQAGNIILFID--AAIDASNILKPSLA-RG-ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGL 337 (468)
T ss_dssp H-HTCCCCEEEEC--C--------CCCTT-SS-SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHT
T ss_pred H-HhcCCeEEEEe--CchhHHHHHHHhhc-CC-CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHH
Confidence 2 23567888999 22222233333332 22 3455555443331 1 7788899999998876
Q ss_pred hc
Q 038724 134 VG 135 (483)
Q Consensus 134 ~~ 135 (483)
..
T Consensus 338 ~~ 339 (468)
T 3pxg_A 338 RD 339 (468)
T ss_dssp TT
T ss_pred HH
Confidence 53
No 199
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.04 E-value=2.3e-05 Score=76.15 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=37.3
Q ss_pred CCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEE
Q 038724 316 SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYL 394 (483)
Q Consensus 316 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L 394 (483)
.|++|+.++++.|.++.++...|. ..+|+.+.+..+ +...-...|..+.+|+.+++..+ +..++.. |.+ .+|+.+
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 345555555555555555555444 345555555533 22223334555555555555442 4444443 333 455555
Q ss_pred ec
Q 038724 395 DM 396 (483)
Q Consensus 395 ~l 396 (483)
.+
T Consensus 254 ~l 255 (401)
T 4fdw_A 254 KL 255 (401)
T ss_dssp EE
T ss_pred Ee
Confidence 55
No 200
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.03 E-value=4.7e-06 Score=78.72 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=83.5
Q ss_pred HHHHHHHHhcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh---------hhcC
Q 038724 7 FYQVWRFLVKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM---------ILST 75 (483)
Q Consensus 7 ~~~l~~~l~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i---------~l~~ 75 (483)
...+.+.+... ....+.|+|++|+||||||+++++..... . ..+++++...- ...+...+ ....
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~-~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~ 97 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--G-YRVIYSSADDF--AQAMVEHLKKGTINEFRNMYK 97 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--T-CCEEEEEHHHH--HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--C-CEEEEEEHHHH--HHHHHHHHHcCcHHHHHHHhc
Confidence 44555555543 34679999999999999999999876211 1 22455554321 11111111 1112
Q ss_pred CcEEEEEcCCCCccc----cccccCCCCC-CCCCCEEEEecCChhhh-------------------hccCChHHHHHHHH
Q 038724 76 KKFLLLLDDLWETID----LSKIGVPLPS-QKIVSKVVFTTHSEEVC-------------------VDCFTPQESWQVFQ 131 (483)
Q Consensus 76 ~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~ilvTtR~~~~~-------------------l~~L~~~~a~~l~~ 131 (483)
+..+|+|||++.... ...+...+.. ...+..+++||...... +.+ +.++..+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 367999999965431 1122111110 12356788877543221 667 8888888888
Q ss_pred HHhcCCcccCCCCchhHHHHHHhHcCCchHHH
Q 038724 132 MKVGNETLVSHPAIHKPAKMVAKDCGGLPLAL 163 (483)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal 163 (483)
..+.... ..-..+..+.+++.+ |....+
T Consensus 177 ~~~~~~~---~~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 177 EKLKEFN---LELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHTT---CCCCHHHHHHHHHHC-SSHHHH
T ss_pred HHHHhcC---CCCCHHHHHHHHHhC-CCHHHH
Confidence 7764322 122245677888888 776543
No 201
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=3.7e-06 Score=70.72 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=21.8
Q ss_pred CcccEEEecCCccccccchhhhcCCCccEEEccCCc
Q 038724 318 PHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNR 353 (483)
Q Consensus 318 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 353 (483)
.+|+.||++++.++...-..+..+++|+.|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 457777777776554433335566666666666664
No 202
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.03 E-value=7.5e-05 Score=70.62 Aligned_cols=157 Identities=17% Similarity=0.105 Sum_probs=87.0
Q ss_pred CCChhHHHHHHHHHhcC-----CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcC
Q 038724 1 IENPKQFYQVWRFLVKK-----DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILST 75 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~-----~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~ 75 (483)
+|.+..++.+...+..+ ....++|+|++|+||||||+.++... ...|. ..+..-.....++...+....
T Consensus 28 ~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~~~~l~~~~~~~~ 101 (334)
T 1in4_A 28 IGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVKQGDMAAILTSLE 101 (334)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCSHHHHHHHHHHCC
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcCHHHHHHHHHHcc
Confidence 46777777777666532 34679999999999999999999976 22211 111111111112211111123
Q ss_pred CcEEEEEcCCCCcc--ccccccCCCCCC--------C----------CCCEEE-EecCChhhh------------hccCC
Q 038724 76 KKFLLLLDDLWETI--DLSKIGVPLPSQ--------K----------IVSKVV-FTTHSEEVC------------VDCFT 122 (483)
Q Consensus 76 ~~~LlvlDdv~~~~--~~~~l~~~~~~~--------~----------~gs~il-vTtR~~~~~------------l~~L~ 122 (483)
++.++++|+++... ..+.+...+... + ....++ .|++...+. +++.+
T Consensus 102 ~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~ 181 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYT 181 (334)
T ss_dssp TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCC
Confidence 45677889886432 111111000000 0 011222 344433221 88899
Q ss_pred hHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCchHHHHHH
Q 038724 123 PQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 123 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 166 (483)
.++-.+++.+.+.... ..-..+.+..|++.++|.|..+.-+
T Consensus 182 ~~~l~~iL~~~~~~~~---~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 182 VKELKEIIKRAASLMD---VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp HHHHHHHHHHHHHHTT---CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 9999999987663222 1223566889999999999765443
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=1.8e-06 Score=74.34 Aligned_cols=109 Identities=17% Similarity=0.069 Sum_probs=82.4
Q ss_pred ccccceEEEEcccc-cccccc------CCCCCCcccEEEecCCcccccc----chhhhcCCCccEEEccCCccCcc----
Q 038724 293 LKWLGLRRMSLMNN-QIKTLL------NTPSCPHLLTLFLNDNYLQDIK----NGFFQFMPCLKVLNLSYNRFLTK---- 357 (483)
Q Consensus 293 ~~~~~l~~l~l~~~-~~~~~~------~~~~~~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~---- 357 (483)
...+.++.|++++| .+.... .....++|++|+|++|.+.... ...+...++|++|+|++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34577999999999 876421 1145689999999999886532 23355668899999999975432
Q ss_pred CCcccccCcCCCEEec--cCCCCCc-----cCccccCCcCCCEEecCCCCC
Q 038724 358 LPSGISKLVSLQHLDI--SFTSTLE-----LPEELKALEKLKYLDMDDHQQ 401 (483)
Q Consensus 358 ~p~~~~~l~~L~~L~l--~~~~i~~-----lp~~~~~l~~L~~L~l~~n~~ 401 (483)
+...+...++|++|++ ++|.++. +...+...++|++|+|++|.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4556777889999999 8898876 444566778999999999984
No 204
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.98 E-value=1.1e-06 Score=72.25 Aligned_cols=104 Identities=12% Similarity=0.061 Sum_probs=58.9
Q ss_pred CCChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcCCcE
Q 038724 1 IENPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILSTKKF 78 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~~~~ 78 (483)
||++..++++.+.+.. .....|.|+|++|+|||++|+++++.. . ..+.++.+.-. ......+....+.-
T Consensus 7 iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~---~----~~~~~~~~~~~--~~~~~~~~~~a~~~ 77 (143)
T 3co5_A 7 LGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG---T----PWVSPARVEYL--IDMPMELLQKAEGG 77 (143)
T ss_dssp -CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT---S----CEECCSSTTHH--HHCHHHHHHHTTTS
T ss_pred eeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC---C----CeEEechhhCC--hHhhhhHHHhCCCC
Confidence 6888888888888764 233468899999999999999998765 1 22222222111 11122221222345
Q ss_pred EEEEcCCCCccc--cccccCCCCCC-CCCCEEEEecCC
Q 038724 79 LLLLDDLWETID--LSKIGVPLPSQ-KIVSKVVFTTHS 113 (483)
Q Consensus 79 LlvlDdv~~~~~--~~~l~~~~~~~-~~gs~ilvTtR~ 113 (483)
.++||+++.... ...+...+... ....++|+||..
T Consensus 78 ~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 78 VLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred eEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 788999976532 22222222111 234677777654
No 205
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=0.00011 Score=70.03 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=86.4
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-----
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK----- 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~----- 63 (483)
|-++..++|.+.+.- ...+=|.++|++|.|||.+|+++++.. ...| +.+..+.-..
T Consensus 152 Gl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 152 GLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQKYIGE 225 (405)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSCSSTTH
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhccccch
Confidence 667777777766642 234668999999999999999999987 2222 3344332211
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc----------------cccccCCCC--CCCCCCEEEEecCChhhh-----
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID----------------LSKIGVPLP--SQKIVSKVVFTTHSEEVC----- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtR~~~~~----- 117 (483)
.....+++ +-...+++|++|+++.... +..+...+. ....+..||.||-.....
T Consensus 226 se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAll 305 (405)
T 4b4t_J 226 GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALL 305 (405)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHc
Confidence 11112222 5567899999999975411 111111111 122334455566444332
Q ss_pred ----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 ----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 ----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
++..+.++-.++|..+.......... ..+.+++.+.|.-
T Consensus 306 RpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv----dl~~lA~~t~G~S 354 (405)
T 4b4t_J 306 RPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI----NLRKVAEKMNGCS 354 (405)
T ss_dssp STTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC----CHHHHHHHCCSCC
T ss_pred CCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC----CHHHHHHHCCCCC
Confidence 55667778888888776544321111 2577888887754
No 206
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.96 E-value=2.1e-05 Score=73.57 Aligned_cols=43 Identities=26% Similarity=0.209 Sum_probs=36.1
Q ss_pred CCChhHHHHHHHHHhc--------------CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK--------------KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--------------~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||+++.++.+...+.. .....+.|+|++|+|||++|+++++..
T Consensus 18 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 6888888888887754 234578899999999999999999876
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00017 Score=69.85 Aligned_cols=149 Identities=13% Similarity=0.165 Sum_probs=86.9
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-----
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK----- 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~----- 63 (483)
|-++..++|.+.+.- ..++=|.++|++|.|||.+|+++++.. ... .+.+..+.-.+
T Consensus 185 Gl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 185 GLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVDKYIGE 258 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCCSSSSH
T ss_pred ChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhccccchH
Confidence 667777777766642 235679999999999999999999987 222 23344332221
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc----------------cccccCCCC--CCCCCCEEEEecCChhhh-----
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID----------------LSKIGVPLP--SQKIVSKVVFTTHSEEVC----- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtR~~~~~----- 117 (483)
.......+ +-...+++|++|+++.... +..++..+. ....+..||.||-.....
T Consensus 259 se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAll 338 (437)
T 4b4t_L 259 SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALL 338 (437)
T ss_dssp HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTT
T ss_pred HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHh
Confidence 11111222 5567899999999974311 011111111 122345666666544332
Q ss_pred ----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 ----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 ----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
++..+.++-.++|..+.......... ..+.+++.+.|+-
T Consensus 339 RpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~----dl~~lA~~t~G~s 387 (437)
T 4b4t_L 339 RPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF----DFEAAVKMSDGFN 387 (437)
T ss_dssp STTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC----CHHHHHHTCCSCC
T ss_pred CCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc----CHHHHHHhCCCCC
Confidence 55567777788888776543321111 2567788887754
No 208
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=9.8e-06 Score=73.44 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 21 IIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
-|.|-+.....|+.|...+.+.- ...|..+.|-
T Consensus 26 kv~I~~g~ky~k~~ll~~i~~~~---~~~f~p~~~~ 58 (267)
T 3rw6_A 26 KITIPYGRKYDKAWLLSMIQSKC---SVPFTPIEFH 58 (267)
T ss_dssp EEEETTGGGSCHHHHHHHHHHTC---SSCCCCEEEE
T ss_pred EEEecCccccCHHHHHHHHHHhC---CCCcEeEEEE
Confidence 45666766788999998886644 4566665554
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.92 E-value=7.8e-05 Score=78.80 Aligned_cols=131 Identities=21% Similarity=0.204 Sum_probs=76.2
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCC---CCE-EEEEEeCCC------cCccchhHH
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPG---FDV-VIWVVVSKE------LKLETSQDD 70 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~---f~~-~~~v~~~~~------~~~~~~~~~ 70 (483)
|||+++++++.+.+......-+.++|++|+|||++|+.+++........ ... .+.++.+.. ..+..+...
T Consensus 183 iG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~ 262 (758)
T 3pxi_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDE 262 (758)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHH
T ss_pred cCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHH
Confidence 7999999999999987766678999999999999999999875211100 011 111222111 112233333
Q ss_pred hhhcCCcEEEEEcCCCCccccccccCCCCCCCCCCEEEEecCChhh----h-------------hccCChHHHHHHHHHH
Q 038724 71 MILSTKKFLLLLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEEV----C-------------VDCFTPQESWQVFQMK 133 (483)
Q Consensus 71 i~l~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~~----~-------------l~~L~~~~a~~l~~~~ 133 (483)
+ ...++.+|++| ...+....+...+. . ...++|.||..... . ++..+.++..+++...
T Consensus 263 ~-~~~~~~iLfiD--~~~~~~~~L~~~l~-~-~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~ 337 (758)
T 3pxi_A 263 I-RQAGNIILFID--AAIDASNILKPSLA-R-GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGL 337 (758)
T ss_dssp H-HTCCCCEEEEC--C--------CCCTT-S-SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHT
T ss_pred H-HhcCCEEEEEc--CchhHHHHHHHHHh-c-CCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 2 33677899999 22222333333332 2 23556655544431 1 7788999999999866
Q ss_pred hcC
Q 038724 134 VGN 136 (483)
Q Consensus 134 ~~~ 136 (483)
...
T Consensus 338 ~~~ 340 (758)
T 3pxi_A 338 RDR 340 (758)
T ss_dssp TTT
T ss_pred HHH
Confidence 543
No 210
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00021 Score=68.46 Aligned_cols=149 Identities=14% Similarity=0.129 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-----
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK----- 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~----- 63 (483)
|-++..++|.+.+.- ...+=|.++|++|.|||.+|+++++.. ...| +.+..+.-..
T Consensus 186 Gld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 186 GLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELIQKYLGD 259 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGCCSSSSH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhhhccCch
Confidence 567777777766532 234679999999999999999999987 2222 2333222111
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc----------------cccccCCCC--CCCCCCEEEEecCChhhh-----
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID----------------LSKIGVPLP--SQKIVSKVVFTTHSEEVC----- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtR~~~~~----- 117 (483)
.....+.+ +-...+++|++|+++.... +..+...+. ....+..||.||-.....
T Consensus 260 sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALl 339 (437)
T 4b4t_I 260 GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALI 339 (437)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSS
T ss_pred HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHh
Confidence 11122222 5567899999999974311 001111111 112234555566444332
Q ss_pred ----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 ----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 ----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
++..+.++-.++|..+.......... ..+.+++.+.|.-
T Consensus 340 RpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv----dl~~LA~~T~GfS 388 (437)
T 4b4t_I 340 RPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV----NLETLVTTKDDLS 388 (437)
T ss_dssp CTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC----CHHHHHHHCCSCC
T ss_pred cCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCCC
Confidence 55567777788888777544322111 2567777877754
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.89 E-value=5e-05 Score=68.93 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=47.3
Q ss_pred CCChhHHHHHHHHHh---c---------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-----
Q 038724 1 IENPKQFYQVWRFLV---K---------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK----- 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~---~---------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~----- 63 (483)
+|.++.++++.+.+. . ...+-+.|+|++|+||||+|+++++.. ...| +.+..+.-..
T Consensus 15 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~~~~~~ 88 (257)
T 1lv7_A 15 AGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVEMFVGV 88 (257)
T ss_dssp CSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTTSCCCC
T ss_pred cCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHHHhhhh
Confidence 466777666655442 1 123458899999999999999999876 2222 3333221111
Q ss_pred -ccchhHHh--hhcCCcEEEEEcCCC
Q 038724 64 -LETSQDDM--ILSTKKFLLLLDDLW 86 (483)
Q Consensus 64 -~~~~~~~i--~l~~~~~LlvlDdv~ 86 (483)
...+...+ .....+.++++|+++
T Consensus 89 ~~~~~~~~~~~a~~~~~~il~iDeid 114 (257)
T 1lv7_A 89 GASRVRDMFEQAKKAAPCIIFIDEID 114 (257)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEETTHH
T ss_pred hHHHHHHHHHHHHHcCCeeehhhhhh
Confidence 01111111 334567899999984
No 212
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00028 Score=68.31 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=84.9
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-----
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK----- 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~----- 63 (483)
|-++..++|.+.+.- ...+=|.++|++|.|||.+|+++++.. ... .+.+..+.-.+
T Consensus 213 Gl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 213 GCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQKYVGE 286 (467)
T ss_dssp TCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCCCSSSH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhcccCCH
Confidence 667777777765531 245679999999999999999999987 222 23343332111
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc----------------cccccCCCC--CCCCCCEEEEecCChhhh-----
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID----------------LSKIGVPLP--SQKIVSKVVFTTHSEEVC----- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtR~~~~~----- 117 (483)
.....+.+ +-...+++|++|+++.... ...+...+. ....+..||.||-.....
T Consensus 287 sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALl 366 (467)
T 4b4t_H 287 GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALL 366 (467)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHH
T ss_pred HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhh
Confidence 11112222 5567899999999974411 001111111 112233455566433322
Q ss_pred ----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 ----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 ----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
++..+.++-.++|..+.........- ..+.+++.+.|.-
T Consensus 367 RpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv----dl~~LA~~T~GfS 415 (467)
T 4b4t_H 367 RPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI----RWELISRLCPNST 415 (467)
T ss_dssp STTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC----CHHHHHHHCCSCC
T ss_pred ccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC----CHHHHHHHCCCCC
Confidence 55667777888888776544321111 2567788887754
No 213
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.81 E-value=2e-05 Score=73.76 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=36.0
Q ss_pred CCChhHHHHHHHHHhcC---------CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKK---------DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 58888888888888653 13589999999999999999999876
No 214
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.80 E-value=2.2e-05 Score=68.48 Aligned_cols=52 Identities=29% Similarity=0.288 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhcC----CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC
Q 038724 5 KQFYQVWRFLVKK----DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVS 59 (483)
Q Consensus 5 ~~~~~l~~~l~~~----~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~ 59 (483)
+.++.+.+++... ..+.+.|+|++|+|||+||+++++... .....++|++.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~ 91 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH
Confidence 3455666666543 126899999999999999999998772 223345666543
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.80 E-value=0.00012 Score=77.33 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|||+++++++.+.+.......+.|+|++|+|||++|+.+++..
T Consensus 189 iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 189 IGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 7999999999999988766788999999999999999998876
No 216
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00012 Score=70.85 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=84.5
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-----
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK----- 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~----- 63 (483)
|-++..++|.+.+.- ...+=|.++||+|.|||.+|+++++.. ... .+.+..+.-..
T Consensus 185 Gl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 185 GLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQMYIGE 258 (434)
T ss_dssp SCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCSSCSSH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhhcccch
Confidence 667777777766431 235679999999999999999999987 222 23343332111
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCc-------cc---------cccccCCCCC--CCCCCEEEEecCChhhh-----
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWET-------ID---------LSKIGVPLPS--QKIVSKVVFTTHSEEVC----- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~-------~~---------~~~l~~~~~~--~~~gs~ilvTtR~~~~~----- 117 (483)
.....+.+ +-...+++|++|+++.. .. ...+...+.. ...+..||.||......
T Consensus 259 se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~All 338 (434)
T 4b4t_M 259 GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALL 338 (434)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTC
T ss_pred HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHh
Confidence 11122222 45567899999999632 00 0111111211 12344566666544332
Q ss_pred ----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 ----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 ----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
++..+.++-.++|..+.........- ..+.+++.+.|.-
T Consensus 339 RpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv----dl~~lA~~t~G~s 387 (434)
T 4b4t_M 339 RSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI----NWQELARSTDEFN 387 (434)
T ss_dssp STTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC----CHHHHHHHCSSCC
T ss_pred cCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC----CHHHHHHhCCCCC
Confidence 56667777788887666433211111 2567788887754
No 217
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.8e-05 Score=66.44 Aligned_cols=84 Identities=7% Similarity=0.064 Sum_probs=66.2
Q ss_pred CCccEEEccCCccCccCCcccccCcCCCEEeccCCC-CCccCc-cccCC----cCCCEEecCCCCCcCCCCCCCCccchh
Q 038724 342 PCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTS-TLELPE-ELKAL----EKLKYLDMDDHQQVMEEGNCQSDDAES 415 (483)
Q Consensus 342 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~-i~~lp~-~~~~l----~~L~~L~l~~n~~~~~p~~~~l~~~~~ 415 (483)
..|+.||+++|.+...--..+..+++|++|+|++|. ++.-.- .+..+ ++|++|+|++|... ...
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I----------TD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV----------TDK 130 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC----------CHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC----------CHH
Confidence 469999999998665544567899999999999997 665321 24443 47999999999633 466
Q ss_pred hHhhhccccccccceeeccC
Q 038724 416 LLKEMLCLEQLNIIRLTSCS 435 (483)
Q Consensus 416 ~~~~l~~l~~L~~L~l~~~~ 435 (483)
....+..+++|+.|++++|+
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 77788899999999999997
No 218
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.76 E-value=3.7e-06 Score=71.95 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhc---CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 4 PKQFYQVWRFLVK---KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 4 ~~~~~~l~~~l~~---~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++.++.+.+++.+ .....++|+|++|+||||||+++++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555555543 234689999999999999999999876
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.75 E-value=5.7e-05 Score=74.93 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=86.8
Q ss_pred CCChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC----
Q 038724 1 IENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK---- 63 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~---- 63 (483)
+|.++.+++|.+.+.. ...+-|.|+|++|+|||++|+++++.. ... .+.+..+.-..
T Consensus 207 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~~l~~~~~g 280 (489)
T 3hu3_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPEIMSKLAG 280 (489)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHHHHHTSCTT
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEchHhhhhhcc
Confidence 5788888888887752 344579999999999999999998875 222 23343221110
Q ss_pred --ccchhHHh--hhcCCcEEEEEcCCCCccc-------------cccccCCCC--CCCCCCEEEEecCChhhh-------
Q 038724 64 --LETSQDDM--ILSTKKFLLLLDDLWETID-------------LSKIGVPLP--SQKIVSKVVFTTHSEEVC------- 117 (483)
Q Consensus 64 --~~~~~~~i--~l~~~~~LlvlDdv~~~~~-------------~~~l~~~~~--~~~~gs~ilvTtR~~~~~------- 117 (483)
...+...+ ...+++.+|+||+++.... ...+...+. ......+||.||......
T Consensus 281 ~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~ 360 (489)
T 3hu3_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360 (489)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGST
T ss_pred hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCC
Confidence 00111111 4556788999999942210 111211111 112234566566544221
Q ss_pred --------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCc-hHHHHH
Q 038724 118 --------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGL-PLALTI 165 (483)
Q Consensus 118 --------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plal~~ 165 (483)
+...+.++-.+++........... ....+.+++.+.|. +-.+..
T Consensus 361 gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~----~~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLAD----DVDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT----TCCHHHHHHTCTTCCHHHHHH
T ss_pred CcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc----hhhHHHHHHHccCCcHHHHHH
Confidence 666778888888887765433111 11245666676664 444443
No 220
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.70 E-value=0.00023 Score=70.00 Aligned_cols=150 Identities=16% Similarity=0.167 Sum_probs=82.3
Q ss_pred CCChhHHHHHHHHHh---c---------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc----
Q 038724 1 IENPKQFYQVWRFLV---K---------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL---- 64 (483)
Q Consensus 1 vgr~~~~~~l~~~l~---~---------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~---- 64 (483)
+|.++.++++.+.+. . ...+-|.|+|++|+|||+||++++... ...| +.++.+.-...
T Consensus 19 ~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~~~g~ 92 (476)
T 2ce7_A 19 GGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVELFVGV 92 (476)
T ss_dssp CSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTCCTTH
T ss_pred CCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHHHhcc
Confidence 466777666665543 1 123458899999999999999999876 2222 23433322111
Q ss_pred --cchhHHh--hhcCCcEEEEEcCCCCccc----------------cccccCCCC--CCCCCCEEEEecCChhhh-----
Q 038724 65 --ETSQDDM--ILSTKKFLLLLDDLWETID----------------LSKIGVPLP--SQKIVSKVVFTTHSEEVC----- 117 (483)
Q Consensus 65 --~~~~~~i--~l~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtR~~~~~----- 117 (483)
..+...+ .....+++|+||+++.... +..+...+. ....+..||.||......
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all 172 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence 0111111 4456789999999965311 111211111 112345666666555332
Q ss_pred ----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 ----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 ----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
++..+.++-.+++..+....... .+ .....+++.+.|..
T Consensus 173 R~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~--~~--v~l~~la~~t~G~s 221 (476)
T 2ce7_A 173 RPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA--ED--VNLEIIAKRTPGFV 221 (476)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC--TT--CCHHHHHHTCTTCC
T ss_pred ccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc--ch--hhHHHHHHhcCCCc
Confidence 45556666677777666443311 11 11455788888876
No 221
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00053 Score=66.32 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=51.4
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-----
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK----- 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~----- 63 (483)
|-++..++|.+.+.- ...+=|.++|++|+|||.+|+++++.. ... .+.+..+.-.+
T Consensus 176 Gl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 176 GLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVHKYLGE 249 (428)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCCSSCSH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhccccch
Confidence 667777777766542 234569999999999999999999987 222 23344332221
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCC
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLW 86 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~ 86 (483)
.....+++ +-...++++++|+++
T Consensus 250 ~e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 250 GPRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred hHHHHHHHHHHHHHcCCCeeechhhh
Confidence 11112222 556789999999995
No 222
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.39 E-value=0.00022 Score=58.54 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=40.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHhhhcCCcEEEEEcCCCCc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDMILSTKKFLLLLDDLWET 88 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i~l~~~~~LlvlDdv~~~ 88 (483)
-..++|+|+.|+|||||++.++.... .. .+ .++++...+-... . ...+.-++||||+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~-~~-g~-~~~~~~~~~~~~~-~------~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL-EA-GK-NAAYIDAASMPLT-D------AAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH-TT-TC-CEEEEETTTSCCC-G------GGGGCSEEEEESTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-hc-CC-cEEEEcHHHhhHH-H------HHhCCCEEEEeCcccc
Confidence 35899999999999999999998772 21 22 2566654432222 1 1234568899999654
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.37 E-value=0.00014 Score=76.78 Aligned_cols=84 Identities=17% Similarity=0.257 Sum_probs=53.7
Q ss_pred CCChhHHHHHHHHHhcC---------CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCcc-----c
Q 038724 1 IENPKQFYQVWRFLVKK---------DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLE-----T 66 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~-----~ 66 (483)
||.++.++.+.+.+... ....+.++|++|+|||++|+++++... ..-...+.++.+.-.... .
T Consensus 494 iGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~~~~~~~~~~~~ 570 (758)
T 3pxi_A 494 IGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSEYMEKHSTSGGQ 570 (758)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGGGCSSCCCC---
T ss_pred cChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechhcccccccccch
Confidence 57888888888877631 123799999999999999999998762 222234555554333211 1
Q ss_pred hhHHhhhcCCcEEEEEcCCCCc
Q 038724 67 SQDDMILSTKKFLLLLDDLWET 88 (483)
Q Consensus 67 ~~~~i~l~~~~~LlvlDdv~~~ 88 (483)
+...+. .....+|+||+++..
T Consensus 571 l~~~~~-~~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 571 LTEKVR-RKPYSVVLLDAIEKA 591 (758)
T ss_dssp CHHHHH-HCSSSEEEEECGGGS
T ss_pred hhHHHH-hCCCeEEEEeCcccc
Confidence 222222 234458999999755
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.36 E-value=0.00037 Score=72.74 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=83.5
Q ss_pred CChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC----CcC-
Q 038724 2 ENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK----ELK- 63 (483)
Q Consensus 2 gr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~----~~~- 63 (483)
|-++..++|.+.+.- ..++-|.++|++|+|||+||+++++.. ..+ .+.+..+. ...
T Consensus 208 Gl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 208 GCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPEIMSKLAGE 281 (806)
T ss_dssp SCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHHHHSSCTTH
T ss_pred CHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHHhhcccchH
Confidence 566677777766531 135679999999999999999999976 222 23443221 111
Q ss_pred ccchhHHh---hhcCCcEEEEEcCCCCccc-------------cccccCCCCC--CCCCCEEEEecCChhhh--------
Q 038724 64 LETSQDDM---ILSTKKFLLLLDDLWETID-------------LSKIGVPLPS--QKIVSKVVFTTHSEEVC-------- 117 (483)
Q Consensus 64 ~~~~~~~i---~l~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~--~~~gs~ilvTtR~~~~~-------- 117 (483)
....++.+ +....+++|+||+++.... ...+...+.. ...+..||.||......
T Consensus 282 se~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~G 361 (806)
T 3cf2_A 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG 361 (806)
T ss_dssp HHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCc
Confidence 11112222 5667899999999964311 1111111110 11233455555443222
Q ss_pred -------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 -------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 -------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
+...+.++-.+++..+......... ...+.+++.+.|.-
T Consensus 362 RFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d----vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 362 RFDREVDIGIPDATGRLEILQIHTKNMKLADD----VDLEQVANETHGHV 407 (806)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHTCSSSEECTT----CCHHHHHHHCCSCC
T ss_pred ccceEEecCCCCHHHHHHHHHHHhcCCCCCcc----cCHHHHHHhcCCCC
Confidence 5566777777788776644332111 22567888887764
No 225
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.30 E-value=0.00067 Score=64.31 Aligned_cols=152 Identities=9% Similarity=-0.099 Sum_probs=97.7
Q ss_pred HHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh---hhcCCcEEEEEcCCC
Q 038724 10 VWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM---ILSTKKFLLLLDDLW 86 (483)
Q Consensus 10 l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i---~l~~~~~LlvlDdv~ 86 (483)
+.+.+...-.+++.++|+.|.||++.+.++.+... ...|+....+.+....+.+++.... .+-+.+-++|+|+++
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 44445434456899999999999999999987651 1234332333445556676666665 566788899999996
Q ss_pred C-c--cccccccCCCCCCCCCCEEEEecCC--------hhhh----------hccCChHHHHHHHHHHhcCCcccCCCCc
Q 038724 87 E-T--IDLSKIGVPLPSQKIVSKVVFTTHS--------EEVC----------VDCFTPQESWQVFQMKVGNETLVSHPAI 145 (483)
Q Consensus 87 ~-~--~~~~~l~~~~~~~~~gs~ilvTtR~--------~~~~----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~ 145 (483)
. . ...+.+...+.....++.+|+++.. +... ..+++.++....+...+...+ ..-.
T Consensus 87 ~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g---~~i~ 163 (343)
T 1jr3_D 87 NGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLN---LELD 163 (343)
T ss_dssp SCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTT---CEEC
T ss_pred CCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcC---CCCC
Confidence 6 3 3455555555444456666665432 1111 667888888877777664333 1223
Q ss_pred hhHHHHHHhHcCCchHHHHHH
Q 038724 146 HKPAKMVAKDCGGLPLALTIV 166 (483)
Q Consensus 146 ~~~~~~i~~~c~g~Plal~~~ 166 (483)
.+.++.+++.++|....+...
T Consensus 164 ~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 164 DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHH
Confidence 466788999999988776543
No 226
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.18 E-value=0.00081 Score=67.84 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+.++|++|+||||+|+.++...
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999876
No 227
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.17 E-value=0.00039 Score=64.71 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhcC---CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 5 KQFYQVWRFLVKK---DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 5 ~~~~~l~~~l~~~---~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++.+.+++... ....+.|+|++|+|||+||.++++..
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555666642 24688999999999999999999877
No 228
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.15 E-value=0.0048 Score=61.08 Aligned_cols=150 Identities=14% Similarity=0.153 Sum_probs=79.3
Q ss_pred CCChhHHHHHHHHHh---cC---------CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC--ccc
Q 038724 1 IENPKQFYQVWRFLV---KK---------DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK--LET 66 (483)
Q Consensus 1 vgr~~~~~~l~~~l~---~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~--~~~ 66 (483)
+|.++.++++.+... .. -.+-+.|+|++|+|||+||++++... ... .+.++.+.-.. ...
T Consensus 34 ~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~~---~i~i~g~~~~~~~~g~ 107 (499)
T 2dhr_A 34 AGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVP---FITASGSDFVEMFVGV 107 (499)
T ss_dssp CSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCC---EEEEEGGGGTSSCTTH
T ss_pred CCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEehhHHHHhhhhh
Confidence 466666666655542 11 12348999999999999999999876 222 34444332111 001
Q ss_pred hhHHh----h--hcCCcEEEEEcCCCCccc----------------cccccCCCCC--CCCCCEEEEecCChhhh-----
Q 038724 67 SQDDM----I--LSTKKFLLLLDDLWETID----------------LSKIGVPLPS--QKIVSKVVFTTHSEEVC----- 117 (483)
Q Consensus 67 ~~~~i----~--l~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~--~~~gs~ilvTtR~~~~~----- 117 (483)
....+ . ....+.++++|+++.... +..+...+.. ...+..++.+|......
T Consensus 108 ~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLl 187 (499)
T 2dhr_A 108 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALL 187 (499)
T ss_dssp HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccc
Confidence 11111 1 123468999999953210 1122211211 12234566666665443
Q ss_pred ----------hccCChHHHHHHHHHHhcCCcccCCCCchhHHHHHHhHcCCch
Q 038724 118 ----------VDCFTPQESWQVFQMKVGNETLVSHPAIHKPAKMVAKDCGGLP 160 (483)
Q Consensus 118 ----------l~~L~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 160 (483)
++..+.++-.+++..+....... . ......++..+.|+.
T Consensus 188 r~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~--~--dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 188 RPGRFDRQIAIDAPDVKGREQILRIHARGKPLA--E--DVDLALLAKRTPGFV 236 (499)
T ss_dssp STTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC--C--SSTTHHHHTTSCSCC
T ss_pred cccccceEEecCCCCHHHHHHHHHHHHhcCCCC--h--HHHHHHHHHhcCCCC
Confidence 55566677777777665322211 1 112456777777765
No 229
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.10 E-value=0.0029 Score=57.87 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 038724 22 IGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.|+|++|+||||||+.++...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999999876
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.01 E-value=0.00052 Score=63.41 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=39.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC---------ccchhHHh---hhcCCcEEEEEcCC
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK---------LETSQDDM---ILSTKKFLLLLDDL 85 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~---------~~~~~~~i---~l~~~~~LlvlDdv 85 (483)
.++.+.++|++|+|||+||+++++.. ...| +.++.+.-.+ +..+.... .-...+.+|+||++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l---~~~~---i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEi 108 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM---GINP---IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDL 108 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH---TCCC---EEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCE---EEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEech
Confidence 34678899999999999999999987 2232 2333221100 11111111 13567899999999
Q ss_pred CC
Q 038724 86 WE 87 (483)
Q Consensus 86 ~~ 87 (483)
+.
T Consensus 109 D~ 110 (293)
T 3t15_A 109 DA 110 (293)
T ss_dssp C-
T ss_pred hh
Confidence 63
No 231
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.00 E-value=0.00093 Score=70.67 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=50.8
Q ss_pred CCChhHHHHHHHHHhc-------------CCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC--cc
Q 038724 1 IENPKQFYQVWRFLVK-------------KDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK--LE 65 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~-------------~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~--~~ 65 (483)
+|.++.+++|.+++.. .....|.|+|++|+||||||++++... ...| +.+..+.-.. ..
T Consensus 207 ~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~l~~~~~g 280 (806)
T 1ypw_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPEIMSKLAG 280 (806)
T ss_dssp CSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHHHSSSSTT
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchHhhhhhhh
Confidence 5778888888887753 234579999999999999999999865 2222 3343221111 01
Q ss_pred chhHHh------hhcCCcEEEEEcCCC
Q 038724 66 TSQDDM------ILSTKKFLLLLDDLW 86 (483)
Q Consensus 66 ~~~~~i------~l~~~~~LlvlDdv~ 86 (483)
+....+ .....+.++++|+++
T Consensus 281 ~~~~~l~~vf~~a~~~~p~il~iDEid 307 (806)
T 1ypw_A 281 ESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEEESGG
T ss_pred hHHHHHHHHHHHHHhcCCcEEEeccHH
Confidence 111111 334567899999995
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.98 E-value=0.0026 Score=58.01 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=38.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc--cchhHHh------hhcCCcEEEEEcCCCC
Q 038724 22 IGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL--ETSQDDM------ILSTKKFLLLLDDLWE 87 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~--~~~~~~i------~l~~~~~LlvlDdv~~ 87 (483)
++|+|++|+||||||++++... .. ..+++....-... .+....+ .....++++++|+++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDA 114 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTT
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhh
Confidence 9999999999999999999876 21 2344443322111 1111112 2245688999999975
No 233
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.94 E-value=0.00059 Score=72.98 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=35.1
Q ss_pred CCChhHHHHHHHHHhcC---------CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKK---------DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||.+..++.+...+... ....+.|+|++|+|||++|+++++..
T Consensus 561 iG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 561 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 57888888887777542 12589999999999999999999876
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.93 E-value=0.00038 Score=64.16 Aligned_cols=62 Identities=18% Similarity=0.395 Sum_probs=38.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEe--CCC-----cCccchhHHh--hhcCCcEEEEEcCCCCc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVV--SKE-----LKLETSQDDM--ILSTKKFLLLLDDLWET 88 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~--~~~-----~~~~~~~~~i--~l~~~~~LlvlDdv~~~ 88 (483)
+++.|+|++|+|||+||.+++... .. .+.|++. .+. .+...++..+ .+...+ +||+|++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccccc
Confidence 567899999999999999998752 11 1345555 221 1233333333 233344 9999998543
No 235
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.87 E-value=0.00032 Score=69.27 Aligned_cols=84 Identities=14% Similarity=0.021 Sum_probs=50.0
Q ss_pred CCChhHHHHHHHHH---hcC--CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc----CccchhHHh
Q 038724 1 IENPKQFYQVWRFL---VKK--DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL----KLETSQDDM 71 (483)
Q Consensus 1 vgr~~~~~~l~~~l---~~~--~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~----~~~~~~~~i 71 (483)
||.++..+++...+ ..+ ..+-+.++|++|+|||++|+++++.. ...+. .+.++.+.-. ...+...+.
T Consensus 40 iG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 115 (456)
T 2c9o_A 40 VGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL---GSKVP-FCPMVGSEVYSTEIKKTEVLMEN 115 (456)
T ss_dssp ESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH---CTTSC-EEEEEGGGGCCSSSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh---CCCce-EEEEeHHHHHHHhhhhhHHHHHH
Confidence 57777766554444 333 23578999999999999999999987 21121 2233333221 111111122
Q ss_pred ---h---hcCCcEEEEEcCCCCc
Q 038724 72 ---I---LSTKKFLLLLDDLWET 88 (483)
Q Consensus 72 ---~---l~~~~~LlvlDdv~~~ 88 (483)
+ ....+.+|++|+++..
T Consensus 116 f~~a~~~~~~~~~il~iDEid~l 138 (456)
T 2c9o_A 116 FRRAIGLRIKETKEVYEGEVTEL 138 (456)
T ss_dssp HHHTEEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHhhhhcCCcEEEEechhhc
Confidence 1 3457889999999643
No 236
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.86 E-value=0.0011 Score=57.57 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHhc---CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 2 ENPKQFYQVWRFLVK---KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 2 gr~~~~~~l~~~l~~---~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|++.++++.+.+.. ....+|+|.|++|.||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 466788888888875 345799999999999999999998755
No 237
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.79 E-value=0.0058 Score=59.02 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=67.4
Q ss_pred CCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEE
Q 038724 316 SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYL 394 (483)
Q Consensus 316 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L 394 (483)
.+..|+.+.+..+ +..+....|..++.|+.+.+..+ +...-...|.++.+|+.+.+..+ +..++.. |.++.+|+.+
T Consensus 263 ~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 263 SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ecccccEEecccc-cceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 4566777776544 33455555667777777777544 33333345666777777777543 5555544 6677777777
Q ss_pred ecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCc--cccCCCCCcccccceee
Q 038724 395 DMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSL--CSLCGLPTVQCLTSRRL 453 (483)
Q Consensus 395 ~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l--~~l~~l~~l~~l~l~~~ 453 (483)
.+..+- .. .....|..+++|+.+.+.++.. ..+.....|+++.+..+
T Consensus 340 ~ip~sv-~~-----------I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 340 AIPSSV-TK-----------IPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EECTTC-CB-----------CCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC--------
T ss_pred EECccc-CE-----------EhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCC
Confidence 775542 11 1224566777777777776542 23444455666655443
No 238
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.68 E-value=0.002 Score=58.57 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=33.6
Q ss_pred CCChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||+...+.++.+.+.. .....|.|+|++|+|||++|+++++..
T Consensus 9 ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 9 LGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp -CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred eeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 5788888877766653 233578899999999999999999876
No 239
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.59 E-value=0.0036 Score=49.81 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=37.3
Q ss_pred EEEccccccc--cccCCCCCCcccEEEecCCccccccchhhhcCCCccEEEccCCcc
Q 038724 300 RMSLMNNQIK--TLLNTPSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRF 354 (483)
Q Consensus 300 ~l~l~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 354 (483)
.++.+++.++ .+|.. --++|+.|+|++|.++.+++..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4666666666 55532 234677778888877777777777777777777777754
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.58 E-value=0.0018 Score=56.51 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 5 KQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 5 ~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.+++|.+.+.. ....+|+|.|++|.|||||++.++...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456666666653 345799999999999999999998766
No 241
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.53 E-value=0.0021 Score=59.65 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=35.6
Q ss_pred CCChhHHHHHHHHHhc--CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK--KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||+...+.++.+.+.. .....|.|+|.+|+|||++|+++++..
T Consensus 5 ig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 5 IGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred EECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 6888888888887764 333568899999999999999999865
No 242
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.52 E-value=0.0022 Score=63.57 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=35.9
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||+++.++.+...+..+. .|.++|++|+|||+||+++++..
T Consensus 25 vGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 25 YERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp SSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence 688888888888877664 78999999999999999999876
No 243
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.51 E-value=0.0015 Score=61.54 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|+|++|+|||||++.+++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 589999999999999999887754
No 244
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.49 E-value=0.0017 Score=55.26 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++.|+|+.|+||||++..++++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999997777665
No 245
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.45 E-value=0.0015 Score=55.31 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|.|+|++|+||||+|+.++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999876
No 246
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.45 E-value=0.0018 Score=60.89 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+++.++.+...+..++ .+.++|++|+|||++|+++++..
T Consensus 30 ~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 30 VGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred eCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence 688888888888887653 68999999999999999999876
No 247
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.41 E-value=0.0028 Score=60.52 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=35.0
Q ss_pred CCChhHHHHHHHHHh-------------cC--CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLV-------------KK--DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~-------------~~--~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||.++.++.+..++. .. ..+.|.++|++|+|||++|+++++..
T Consensus 18 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 18 IGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 588888888888772 11 33578999999999999999999876
No 248
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.38 E-value=0.0067 Score=48.25 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=37.5
Q ss_pred EEEccCCccCc--cCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCCCc
Q 038724 346 VLNLSYNRFLT--KLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQQV 402 (483)
Q Consensus 346 ~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~ 402 (483)
.++.+++. +. .+|..+. .+|++|+|++|.|..+|.. +..+++|+.|+|++|...
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCC-CccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 56666664 44 6665442 4577888888888888766 567788888888888643
No 249
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.34 E-value=0.0018 Score=54.31 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|+|.|++|+||||+|+.+++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999876
No 250
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.32 E-value=0.0056 Score=59.12 Aligned_cols=131 Identities=16% Similarity=0.199 Sum_probs=90.5
Q ss_pred cccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCC
Q 038724 330 LQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNC 408 (483)
Q Consensus 330 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~ 408 (483)
+..+....|.....|+.+.+..+ ....-...+..+.+|+.+.+. +.+..++.. |.++.+|+.+.+..+- .
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v-~------ 323 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGI-T------ 323 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTC-C------
T ss_pred ceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcc-c------
Confidence 45556667888899999999776 344445678888999999995 457788776 8889999999998652 2
Q ss_pred CCccchhhHhhhccccccccceeecc--Cc--cccCCCCCcccccceeeeeeeeecccccCccceeecCC
Q 038724 409 QSDDAESLLKEMLCLEQLNIIRLTSC--SL--CSLCGLPTVQCLTSRRLNLEVEDWHKCTGEVHKVLQSG 474 (483)
Q Consensus 409 ~l~~~~~~~~~l~~l~~L~~L~l~~~--~l--~~l~~l~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 474 (483)
......|..+.+|+.+.+..+ .+ .++.+..+|+.+++..+....+.+..|.++....+..+
T Consensus 324 -----~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 324 -----QILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp -----EECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC--------
T ss_pred -----EehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCCC
Confidence 122346888999999999654 12 45678889999988776666566666666655444433
No 251
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.29 E-value=0.0023 Score=54.62 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.7
Q ss_pred hcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 15 VKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 15 ~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
......+|.|.|++|+||||+++.++...
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33345789999999999999999999876
No 252
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.27 E-value=0.0048 Score=58.19 Aligned_cols=52 Identities=17% Similarity=0.093 Sum_probs=35.4
Q ss_pred HHHHHHhcC---CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC
Q 038724 9 QVWRFLVKK---DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK 63 (483)
Q Consensus 9 ~l~~~l~~~---~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~ 63 (483)
+|.+.|..+ .-+++.|+|++|+||||||.+++.... . .-..++|++....++
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~-~--~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ-K--MGGVAAFIDAEHALD 102 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH-h--cCCeEEEEecccccc
Confidence 455555523 236999999999999999999988751 1 112367887665444
No 253
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.27 E-value=0.0038 Score=58.03 Aligned_cols=27 Identities=26% Similarity=0.684 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++.++|+|+|=|||||||.+..++.-.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 467999999999999999998887655
No 254
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.26 E-value=0.0044 Score=54.59 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 7 FYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 7 ~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+.+.+.+.....+.|+|+|.+|+|||||+..+....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3455555555667899999999999999999998875
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.22 E-value=0.002 Score=54.76 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|.|+|+||+|+|||||++++..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999998765
No 256
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.20 E-value=0.0048 Score=56.65 Aligned_cols=27 Identities=33% Similarity=0.250 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....+|+|.|++|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998766
No 257
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.19 E-value=0.021 Score=54.69 Aligned_cols=104 Identities=15% Similarity=0.057 Sum_probs=64.2
Q ss_pred CCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEeccCCCCCccCcc-ccCCcCCCEE
Q 038724 316 SCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLDISFTSTLELPEE-LKALEKLKYL 394 (483)
Q Consensus 316 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L 394 (483)
.+..|+.+.+..+ ++.+....|....+|+.+.+..+ +...-...+..+.+|+.+.+..+.+..++.. |.++.+|+.+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 4566777777654 55666666777777777777654 2333334566777777777777767777654 6677777777
Q ss_pred ecCCCCCcCCCCCCCCccchhhHhhhccccccccceeec
Q 038724 395 DMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTS 433 (483)
Q Consensus 395 ~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~ 433 (483)
.+..+- .. .....|..+.+|+.+.+..
T Consensus 316 ~lp~~l-~~-----------I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 316 TLPTAL-KT-----------IQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp ECCTTC-CE-----------ECTTTTTTCTTCCCCCCCT
T ss_pred EcCccc-cE-----------EHHHHhhCCCCCCEEEECC
Confidence 776542 11 1223456666676666643
No 258
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.18 E-value=0.004 Score=54.65 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 5 KQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 5 ~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+..+++.+.+.....++|+|+|.+|+|||||+.++....
T Consensus 16 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 16 RLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345555566655677899999999999999999998875
No 259
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.17 E-value=0.004 Score=53.79 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....+|+|+|++|.||||+++.++...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445799999999999999999998876
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.15 E-value=0.0025 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|+|.|++|+||||+|+.+ +..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 37899999999999999999 544
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.15 E-value=0.0031 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 038724 20 GIIGLFGTGGVGKTTILKQINN 41 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~ 41 (483)
.+|.|.|++|+||||+|+.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 262
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.14 E-value=0.0046 Score=59.34 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+.++|++|+|||++|+++++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999876
No 263
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.12 E-value=0.0027 Score=54.03 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+.|.|+|++|+||||+|+.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 264
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.11 E-value=0.0027 Score=54.88 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|+|++|+||||+|+.++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 265
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.07 E-value=0.0025 Score=60.38 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=32.2
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.+...+.+...+.......+.|+|++|+|||++|+++++..
T Consensus 27 ~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 27 VGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred cChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 5777766655544443333459999999999999999999876
No 266
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.05 E-value=0.0034 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|.|.|++|+||||+|+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999877
No 267
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.05 E-value=0.0036 Score=53.53 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|.|++|+||||+++.++...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 589999999999999999998753
No 268
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.05 E-value=0.0032 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998765
No 269
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.02 E-value=0.0062 Score=54.41 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....|+|.|++|+||||+|+.++++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 270
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.01 E-value=0.0049 Score=58.33 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK 63 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~ 63 (483)
+++.|+|.+|+||||||.+++... .. .-..++|++....++
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~-~~--~g~~vlyid~E~s~~ 104 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAA-QR--EGKTCAFIDAEHALD 104 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HH--CCCeEEEEeCCCCcc
Confidence 589999999999999999988765 11 123578888866554
No 271
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.00 E-value=0.0068 Score=55.61 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|.|.|++|+||||+|+.++++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 272
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.99 E-value=0.0031 Score=52.96 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|+|+|++|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998875
No 273
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.98 E-value=0.018 Score=60.72 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=34.5
Q ss_pred CCChhHHHHHHHHHhcC---------CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKK---------DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~---------~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||.++.++.+..++... ....+.++|++|+|||++|+++++..
T Consensus 461 ~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 461 FGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 57778888777777531 23479999999999999999999876
No 274
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.97 E-value=0.0061 Score=57.01 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHh----cCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 4 PKQFYQVWRFLV----KKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 4 ~~~~~~l~~~l~----~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++.++++.+.+. .+....|.|+|++|+||||+++.++...
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 445555555553 4566779999999999999999988765
No 275
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.96 E-value=0.0042 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|.|.|++|+||||+|+.+++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 276
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.94 E-value=0.0066 Score=56.35 Aligned_cols=27 Identities=26% Similarity=0.684 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...++|+|+|-||+||||+|..++...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH
Confidence 366899999999999999999988776
No 277
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.93 E-value=0.0041 Score=55.98 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|++|+||||+|++++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999876
No 278
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.93 E-value=0.0064 Score=57.45 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK 63 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~ 63 (483)
+++.|+|++|+||||||.+++.... ..-..++|++....++
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~ 102 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALD 102 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcC
Confidence 5899999999999999999987651 1123478888766544
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.89 E-value=0.0042 Score=53.06 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|+|.|++|+||||+|+.+++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999876
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.88 E-value=0.0033 Score=53.25 Aligned_cols=25 Identities=44% Similarity=0.503 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+.|.|+|++|+||||+|+.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998876
No 281
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.86 E-value=0.0037 Score=54.21 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++|+|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999998876
No 282
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.85 E-value=0.0081 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 038724 22 IGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 22 v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.|+|++|+||||||+.++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 283
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.85 E-value=0.0036 Score=54.13 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|.|++|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998875
No 284
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.84 E-value=0.0036 Score=58.87 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|+|.+|+|||+|+..+++..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHH
Confidence 478999999999999999988864
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.84 E-value=0.0044 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+++|.|+.|.||||+++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998765
No 286
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.79 E-value=0.0057 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
-.+++|+|++|.||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998764
No 287
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.78 E-value=0.0078 Score=58.51 Aligned_cols=40 Identities=28% Similarity=0.532 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL 62 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~ 62 (483)
.++|+|.+|+|||||+..+..+.. ..+.+.++++-+++..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGert 192 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERT 192 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCH
T ss_pred EEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCc
Confidence 689999999999999999887651 1122334555555443
No 288
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.76 E-value=0.0049 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+++|+|++|+||||+++.++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998865
No 289
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.75 E-value=0.0067 Score=52.44 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....+|+|.|++|+||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998865
No 290
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.75 E-value=0.017 Score=55.64 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=79.5
Q ss_pred cccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEE
Q 038724 294 KWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHL 371 (483)
Q Consensus 294 ~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 371 (483)
....++.+.+..+..+ +... ..+..+..+....+. ++...|..+.+|+.+.+..+ +...-...|..+.+|+.+
T Consensus 251 ~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 251 GCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceeEEcCCCcce-eeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 4455666666554322 2221 356777777766543 44555777888888888766 343344567788888888
Q ss_pred eccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeecc
Q 038724 372 DISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSC 434 (483)
Q Consensus 372 ~l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~ 434 (483)
++.. .+..++.. |.++++|+.+.+..+ +..+ ....|..+++|+.+.+..+
T Consensus 326 ~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I-----------~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 326 DLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKI-----------GANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEE-----------CTTTBTTCTTCCEEEEEGG
T ss_pred EeCC-cccEEhHHhccCCCCCCEEEECcc-ccEe-----------hHHHhhCCCCCCEEEECCC
Confidence 8864 37777654 778888888888765 2221 2245777888888888654
No 291
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.75 E-value=0.0061 Score=53.16 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|.|.|++|+||+|.|+.+++++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999877
No 292
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.75 E-value=0.0057 Score=52.38 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|.|++|+||||+|+.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998865
No 293
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.74 E-value=0.0059 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhh
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
...|+|+|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999886
No 294
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.71 E-value=0.0056 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|.|+.|+||||+|+.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 295
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.69 E-value=0.02 Score=50.86 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEeCCCcC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERP----GFDVVIWVVVSKELK 63 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~f~~~~~v~~~~~~~ 63 (483)
.++.|+|++|+|||||+..++... .... .-..++|++....+.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~ 71 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFR 71 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcC
Confidence 489999999999999999998753 1111 235788887666443
No 296
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.69 E-value=0.0039 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|+|++|+||||+|+.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 297
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.69 E-value=0.0064 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
.+++|.|++|.||||+++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999763
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.68 E-value=0.0053 Score=51.66 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|.|.|++|+||||+|+.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 299
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.66 E-value=0.0058 Score=52.79 Aligned_cols=23 Identities=43% Similarity=0.755 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999877
No 300
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.65 E-value=0.0072 Score=51.68 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcC-CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 6 QFYQVWRFLVKK-DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 6 ~~~~l~~~l~~~-~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+..+..++..- ..+.+.|+|++|+|||++|.++++..
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 455666666542 12379999999999999999999876
No 301
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.64 E-value=0.0058 Score=52.42 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|.|++|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998866
No 302
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.63 E-value=0.0067 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|+|.|++|+||||+|+.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998865
No 303
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.63 E-value=0.0048 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++++|.|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998765
No 304
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.63 E-value=0.0063 Score=52.63 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 489999999999999999998754
No 305
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.62 E-value=0.023 Score=55.10 Aligned_cols=40 Identities=33% Similarity=0.570 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE 61 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~ 61 (483)
..++|.|.+|+|||+|+..+++... +.+-+.++++-+++.
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER 193 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGER 193 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCC
T ss_pred CeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCc
Confidence 4789999999999999999988641 334466777766644
No 306
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.61 E-value=0.0074 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++++|+|++|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44689999999999999999998765
No 307
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.60 E-value=0.0081 Score=51.40 Aligned_cols=26 Identities=31% Similarity=0.602 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|+|+|+.|.||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998864
No 308
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.60 E-value=0.0068 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|+|.|++|+||||+|+.+++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 309
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.59 E-value=0.0081 Score=51.80 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhh
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
....+|+|+|+.|+||||+|+.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999873
No 310
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.57 E-value=0.0097 Score=53.50 Aligned_cols=26 Identities=38% Similarity=0.391 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|.|+|++|.||||+|+.++...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998876
No 311
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.57 E-value=0.0083 Score=58.20 Aligned_cols=43 Identities=26% Similarity=0.209 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHHHhc--------------CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVK--------------KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~--------------~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
||-++..+.+..++.. ...+-+.++|++|+|||++|++++...
T Consensus 18 vGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 5667777777666522 124569999999999999999999876
No 312
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.57 E-value=0.0061 Score=52.42 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|+|.|++|+||||+|+.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.56 E-value=0.0052 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|.|++|+||||+|+.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999876
No 314
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.55 E-value=0.012 Score=55.78 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK 63 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~ 63 (483)
+++.|+|.+|+||||||.+++... .. .-..++|++....++
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~-~~--~g~~vlyi~~E~s~~ 115 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQA-QK--AGGTCAFIDAEHALD 115 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHH-HH--CCCeEEEEECCCChh
Confidence 488999999999999999988765 11 123578888776544
No 315
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.54 E-value=0.0087 Score=56.60 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=52.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeC----------------CCcCccchhHHh--hhcCCcEEE
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVS----------------KELKLETSQDDM--ILSTKKFLL 80 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~----------------~~~~~~~~~~~i--~l~~~~~Ll 80 (483)
-.+++|+|+.|.||||+.+.+........+ ..++.+.-. .......+...+ .+...+=+|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~--~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKY--HHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCC--CEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCC--cEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 359999999999999999998765411100 111111100 001111222222 677788888
Q ss_pred EEcCCCCccccccccCCCCCCCCCCEEEEecCChh
Q 038724 81 LLDDLWETIDLSKIGVPLPSQKIVSKVVFTTHSEE 115 (483)
Q Consensus 81 vlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 115 (483)
++|++-+.+.+..+... ...|.-+++|+....
T Consensus 201 llDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 201 LVGEMRDLETIRLALTA---AETGHLVFGTLHTTS 232 (356)
T ss_dssp EESCCCSHHHHHHHHHH---HHTTCEEEEEESCSS
T ss_pred ecCCCCCHHHHHHHHHH---HhcCCEEEEEEccCh
Confidence 99999765544433222 123566888877653
No 316
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.54 E-value=0.0098 Score=57.37 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++|.|.+|+|||+|+.+++++.
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~ 175 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQA 175 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHC
T ss_pred EEEEeCCCCcChHHHHHHHHHHH
Confidence 57899999999999999999877
No 317
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.53 E-value=0.019 Score=55.56 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36799999999999999999998877
No 318
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.52 E-value=0.0076 Score=51.45 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|.|++|+||||+|+.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 319
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.51 E-value=0.0072 Score=52.25 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 038724 21 IIGLFGTGGVGKTTILKQINN 41 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~ 41 (483)
+|+|+|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 320
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.51 E-value=0.0055 Score=51.91 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|.|.|++|+||||+|+.+++..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998876
No 321
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.51 E-value=0.0068 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+++|.|++|+||||+++.+++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.50 E-value=0.007 Score=53.31 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|+|+|++|.||||+|+.++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998865
No 323
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.50 E-value=0.019 Score=55.73 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=28.9
Q ss_pred HHHHHHHHhc---------CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 7 FYQVWRFLVK---------KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 7 ~~~l~~~l~~---------~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++.+.+.. ...++|.++|.+|+||||++..++...
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455566543 236799999999999999999998877
No 324
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.49 E-value=0.0082 Score=52.01 Aligned_cols=22 Identities=45% Similarity=0.585 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 038724 20 GIIGLFGTGGVGKTTILKQINN 41 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~ 41 (483)
.+|+|+|+.|.||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 325
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.49 E-value=0.0078 Score=50.83 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 326
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.49 E-value=0.0054 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|.+.|.||+||||+|..++...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 58889999999999999988876
No 327
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.47 E-value=0.021 Score=58.41 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 44 ~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 57788888888888876 489999999999999999999866
No 328
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.47 E-value=0.0096 Score=51.62 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|+|++|.||||+|+.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998754
No 329
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.47 E-value=0.0078 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 330
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.47 E-value=0.0067 Score=50.89 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 038724 20 GIIGLFGTGGVGKTTILKQIN 40 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~ 40 (483)
.+++|+|++|.|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 589999999999999999854
No 331
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.45 E-value=0.065 Score=51.53 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=96.9
Q ss_pred ccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCCEEe
Q 038724 295 WLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQHLD 372 (483)
Q Consensus 295 ~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 372 (483)
...++.+.+..+ ++.+... ..+..++.+.+..+. ..+....|.....++.+....+. +. ...+..+.+|+.+.
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~-i~--~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI-VP--EKTFYGCSSLTEVK 303 (394)
T ss_dssp TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE-EC--TTTTTTCTTCCEEE
T ss_pred cCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee-ec--cccccccccccccc
Confidence 345666666543 3333322 467889999988763 45666668888899998887663 22 23577889999999
Q ss_pred ccCCCCCccCcc-ccCCcCCCEEecCCCCCcCCCCCCCCccchhhHhhhccccccccceeeccCc-----cccCCCCCcc
Q 038724 373 ISFTSTLELPEE-LKALEKLKYLDMDDHQQVMEEGNCQSDDAESLLKEMLCLEQLNIIRLTSCSL-----CSLCGLPTVQ 446 (483)
Q Consensus 373 l~~~~i~~lp~~-~~~l~~L~~L~l~~n~~~~~p~~~~l~~~~~~~~~l~~l~~L~~L~l~~~~l-----~~l~~l~~l~ 446 (483)
+..+ +..++.. |.++++|+.+++.++ +.. .....|..+.+|+.+.+..+ + .++.+..+|+
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-----------I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE-----------IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCE-----------ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccE-----------EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 9654 7777665 888999999999765 222 22346788899999998765 3 3567778888
Q ss_pred ccccee
Q 038724 447 CLTSRR 452 (483)
Q Consensus 447 ~l~l~~ 452 (483)
.+++..
T Consensus 370 ~i~lp~ 375 (394)
T 4fs7_A 370 KVELPK 375 (394)
T ss_dssp EEEEEG
T ss_pred EEEECC
Confidence 887754
No 332
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.45 E-value=0.0076 Score=51.99 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...|+|.|++|+||||+|+.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.44 E-value=0.008 Score=52.00 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|++|+||||+++.++...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998755
No 334
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.44 E-value=0.0089 Score=54.00 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|.|.|++|+||||+|+.++...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998864
No 335
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.40 E-value=0.011 Score=50.38 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=15.6
Q ss_pred cCCCEEeccCCCCCcc-----CccccCCcCCCEEecCCC
Q 038724 366 VSLQHLDISFTSTLEL-----PEELKALEKLKYLDMDDH 399 (483)
Q Consensus 366 ~~L~~L~l~~~~i~~l-----p~~~~~l~~L~~L~l~~n 399 (483)
+.|++|+|++|.|+.- -..+..-+.|+.|+|++|
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 4455555555554331 122333345666666544
No 336
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.40 E-value=0.0095 Score=53.52 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|+|.|++|.||||+|+.+++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.39 E-value=0.0084 Score=51.26 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|.|+.|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 338
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.39 E-value=0.03 Score=51.41 Aligned_cols=56 Identities=11% Similarity=-0.013 Sum_probs=37.8
Q ss_pred HHHHHHHh----cC-CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc
Q 038724 8 YQVWRFLV----KK-DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL 64 (483)
Q Consensus 8 ~~l~~~l~----~~-~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~ 64 (483)
.+|.+.|. .+ ...++.|+|++|+||||||.+++... ...+.-..++|++....++.
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~-~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSY-MRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHH-HHHCTTCEEEEEESSCCCCH
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEeccchhhH
Confidence 34555665 22 22378999999999999999987765 21111346889987766654
No 339
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.38 E-value=0.0066 Score=52.32 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++++|+|++|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998755
No 340
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.38 E-value=0.0084 Score=52.38 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|+|.|++|+||||+|+.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
No 341
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.37 E-value=0.0089 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|+|.|++|+||||+|+.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 342
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.34 E-value=0.01 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|+|+.|.|||||++.++...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 343
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.34 E-value=0.0084 Score=52.13 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|.|+.|+||||+|+.+++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999876
No 344
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.33 E-value=0.042 Score=52.72 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=30.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCC----CCCCEEEEEEeCCCcC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSER----PGFDVVIWVVVSKELK 63 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~~f~~~~~v~~~~~~~ 63 (483)
.++.|+|++|+|||||+..++-.. ... +.-..++|++....+.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~-~~p~~~Gg~~~~viyid~E~~~~ 225 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTC-QIPLDIGGGEGKCLYIDTEGTFR 225 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHh-ccCcccCCCCCcEEEEeCCCccC
Confidence 489999999999999999775332 111 1235688887766544
No 345
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.32 E-value=0.031 Score=54.52 Aligned_cols=50 Identities=30% Similarity=0.454 Sum_probs=34.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC-ccchhHHh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK-LETSQDDM 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i 71 (483)
..++|.|.+|+|||+|+..++++. .+.+-+.++++-+++... ..++.+++
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~ 216 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEM 216 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhh
Confidence 478999999999999999998864 133456777776665432 33444333
No 346
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.28 E-value=0.031 Score=52.18 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=35.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEeCCCcCccchh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERP----GFDVVIWVVVSKELKLETSQ 68 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~ 68 (483)
.++.|+|++|+|||++|.+++... .... .-..++|++....++..++.
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~ 159 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIE 159 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH
Confidence 589999999999999999998764 1110 13468899888766554443
No 347
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.26 E-value=0.0093 Score=51.96 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|.|+.|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999876
No 348
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.25 E-value=0.014 Score=50.94 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKL 64 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~ 64 (483)
.++.|+|++|+||||||..++. . .-..++|++.......
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~ 59 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSP 59 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCH
Confidence 4899999999999999999987 2 1245778876654433
No 349
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.24 E-value=0.018 Score=50.02 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....+|+|.|++|+||||+|+.++...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998866
No 350
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.24 E-value=0.01 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|+|.|++|+||||+|+.+++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998865
No 351
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.21 E-value=0.052 Score=51.85 Aligned_cols=105 Identities=12% Similarity=0.121 Sum_probs=78.7
Q ss_pred cccccceEEEEccccccccccCC--CCCCcccEEEecCCccccccchhhhcCCCccEEEccCCccCccCCcccccCcCCC
Q 038724 292 ALKWLGLRRMSLMNNQIKTLLNT--PSCPHLLTLFLNDNYLQDIKNGFFQFMPCLKVLNLSYNRFLTKLPSGISKLVSLQ 369 (483)
Q Consensus 292 ~~~~~~l~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 369 (483)
+.....|+.+.+..+ ++.+... ..+.+|+.+.+..+ +..++...|..+.+|+.+.+.++.+...-+..|.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 345566777777654 4444433 46788999998754 6777888899999999999988754444456788999999
Q ss_pred EEeccCCCCCccCcc-ccCCcCCCEEecCCC
Q 038724 370 HLDISFTSTLELPEE-LKALEKLKYLDMDDH 399 (483)
Q Consensus 370 ~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~n 399 (483)
.+.+..+ ++.++.. |.++++|+.+.+..+
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 9999644 7777765 888999999988654
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.20 E-value=0.011 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|+|.|+.|+||||+++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.18 E-value=0.01 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|+|.|++|+||||+|+.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999999876
No 354
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.16 E-value=0.029 Score=49.31 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=28.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhccc--CCC-CCCEEEEEEeCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCS--ERP-GFDVVIWVVVSK 60 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~--~~~-~f~~~~~v~~~~ 60 (483)
.+++|+|++|+|||||++.++..... ... ....++|+....
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 59999999999999999999864311 011 234567776443
No 355
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.16 E-value=0.011 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|+|.|+.|+||||+++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998865
No 356
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.13 E-value=0.011 Score=49.16 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++++|+|+.|+||||++.++....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998876
No 357
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.11 E-value=0.012 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|.|+.|+|||||++.++.-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999998765
No 358
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.10 E-value=0.048 Score=51.31 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=35.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCEEEEEEeCCCcCccchh
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERP----GFDVVIWVVVSKELKLETSQ 68 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~----~f~~~~~v~~~~~~~~~~~~ 68 (483)
-.++.|+|++|+|||+||.+++... .... .-..++|++....++..++.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~ 174 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLR 174 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH
Confidence 3689999999999999999998764 1111 23468899888766554443
No 359
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.09 E-value=0.0097 Score=62.18 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=39.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC------Cc-CccchhHHh---hhcCCcEEEEEcCCCC
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK------EL-KLETSQDDM---ILSTKKFLLLLDDLWE 87 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~------~~-~~~~~~~~i---~l~~~~~LlvlDdv~~ 87 (483)
.+-|.++|++|.|||.+|+++++.. ... ++.++. .. .......++ +-+..+++|+||+++.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred CceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 3458899999999999999999976 221 222221 11 011122222 4567899999999964
No 360
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.09 E-value=0.016 Score=53.87 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|+|.|++|+||||+|+.+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999998765
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.09 E-value=0.012 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|+|.|+.|.||||+++.+++..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999765
No 362
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.06 E-value=0.013 Score=54.61 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999876
No 363
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.05 E-value=0.014 Score=56.29 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|.|.+|+|||+|+.+++++.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~ 171 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQA 171 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHC
T ss_pred CEEEEecCCCCCchHHHHHHHHHH
Confidence 357899999999999999999876
No 364
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.01 E-value=0.012 Score=51.52 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|+.|+|||||.+.+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999998765
No 365
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.99 E-value=0.013 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.|.|++|+||+|.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999876
No 366
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.99 E-value=0.017 Score=57.08 Aligned_cols=41 Identities=15% Similarity=-0.027 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHh--cCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 3 NPKQFYQVWRFLV--KKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 3 r~~~~~~l~~~l~--~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|++..+.+.+... .....+|.+.|++|.||||+|++++++.
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 4555556666552 2244689999999999999999999988
No 367
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.98 E-value=0.027 Score=53.38 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=26.9
Q ss_pred HHHHHHh--cCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 9 QVWRFLV--KKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 9 ~l~~~l~--~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++.+.+. .....+|+|+|.+|+||||++..++...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443 3466799999999999999999987654
No 368
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.97 E-value=0.044 Score=54.21 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|+|+|.+|+||||++.+++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998766
No 369
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.96 E-value=0.016 Score=47.78 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.-.+++|.|+.|.|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34699999999999999999998765
No 370
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.93 E-value=0.016 Score=53.78 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....+|+|.|+.|.|||||++.++.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345699999999999999999998765
No 371
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.93 E-value=0.016 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|.|+.|+||||||..+++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 589999999999999999998865
No 372
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.93 E-value=0.015 Score=53.82 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++|+|+|+.|+||||||..++++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 373
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.92 E-value=0.021 Score=55.75 Aligned_cols=62 Identities=27% Similarity=0.356 Sum_probs=42.4
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCE-EEEEEeCCCc-CccchhHHh-------------------------
Q 038724 20 GIIGLFGTGGVGKTTIL-KQINNRFCSERPGFDV-VIWVVVSKEL-KLETSQDDM------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa-~~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i------------------------- 71 (483)
..++|.|.+|+|||+|| ..+++.. .-+. ++++-+++.. ...++.+++
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 46899999999999996 5777754 2343 4566665443 233444333
Q ss_pred ------------hhcCCcEEEEEcCCC
Q 038724 72 ------------ILSTKKFLLLLDDLW 86 (483)
Q Consensus 72 ------------~l~~~~~LlvlDdv~ 86 (483)
.-+++.+|+++||+.
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 346899999999974
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.92 E-value=0.016 Score=48.86 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|+|+.|.||||+++.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999998865
No 375
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.92 E-value=0.013 Score=51.53 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|.|.|++|+||||+|+.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.91 E-value=0.0067 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.717 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 377
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.91 E-value=0.012 Score=51.63 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|+.|+|||||++.++...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 378
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.90 E-value=0.017 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+|+|.|+.|.|||||++.++...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 379
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.89 E-value=0.017 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHh
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINN 41 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~ 41 (483)
...+|+|+|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 380
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.88 E-value=0.016 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|+|+.|+||||||..++++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 589999999999999999999866
No 381
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.87 E-value=0.018 Score=65.78 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=44.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCcc---------------------chhHHh---hh
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLE---------------------TSQDDM---IL 73 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~---------------------~~~~~i---~l 73 (483)
..+.|.|+|++|+|||+||.+++.... ..-..+.|+++...++.. +....+ .-
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 346999999999999999999988762 222346677665443111 122222 33
Q ss_pred cCCcEEEEEcCCC
Q 038724 74 STKKFLLLLDDLW 86 (483)
Q Consensus 74 ~~~~~LlvlDdv~ 86 (483)
+.+..+||+|.+.
T Consensus 1503 ~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVA 1515 (2050)
T ss_dssp HTCCSEEEESCGG
T ss_pred cCCCCEEEEcChh
Confidence 4778899999994
No 382
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.85 E-value=0.03 Score=52.10 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK 60 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~ 60 (483)
.++.|.|.+|+||||+|..++... ...+ ..++|++...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE~ 106 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLEM 106 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECCC
Confidence 589999999999999999998766 2222 5688887653
No 383
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.84 E-value=0.015 Score=51.24 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+|+|.|++|.||||+|+.+++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999876
No 384
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.82 E-value=0.017 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
-+.|.|.|++|+||||||.+++++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999998764
No 385
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.80 E-value=0.023 Score=55.41 Aligned_cols=62 Identities=29% Similarity=0.388 Sum_probs=41.9
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCE-EEEEEeCCCc-CccchhHHh-------------------------
Q 038724 20 GIIGLFGTGGVGKTTIL-KQINNRFCSERPGFDV-VIWVVVSKEL-KLETSQDDM------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa-~~~~~~~~~~~~~f~~-~~~v~~~~~~-~~~~~~~~i------------------------- 71 (483)
..++|.|.+|+|||+|| ..+++.. +-+. ++++-+++.. ...++.+++
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 46899999999999995 5777765 2343 4566555433 233444333
Q ss_pred ------------hhcCCcEEEEEcCCC
Q 038724 72 ------------ILSTKKFLLLLDDLW 86 (483)
Q Consensus 72 ------------~l~~~~~LlvlDdv~ 86 (483)
.-+++.+|+++||+.
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 346899999999974
No 386
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.79 E-value=0.018 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHh
Q 038724 19 VGIIGLFGTGGVGKTTILKQINN 41 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~ 41 (483)
..+|+|.|+.|.||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 387
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.77 E-value=0.016 Score=50.12 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|+|.|+.|+||||+|+.++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998876
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.76 E-value=0.016 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
No 389
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.75 E-value=0.016 Score=50.67 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|.|.|++|+||||+|+.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 390
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.72 E-value=0.016 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 391
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.69 E-value=0.027 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+++|+|+.|+||||+++.++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998766
No 392
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.69 E-value=0.0093 Score=54.76 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=20.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998865
No 393
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.68 E-value=0.013 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|+|+|++|.||||+++.++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999999876
No 394
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.67 E-value=0.02 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|+|.|+.|+||||||..+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999865
No 395
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.66 E-value=0.022 Score=55.67 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=41.1
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCC-EEEEEEeCCCcC-ccchhHHh-------------------------
Q 038724 20 GIIGLFGTGGVGKTTIL-KQINNRFCSERPGFD-VVIWVVVSKELK-LETSQDDM------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa-~~~~~~~~~~~~~f~-~~~~v~~~~~~~-~~~~~~~i------------------------- 71 (483)
..++|.|.+|+|||+|| ..+++.. . -+ .++++-+++... ..++.+++
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 36799999999999995 5777754 2 33 345565554332 33333333
Q ss_pred ------------hhcCCcEEEEEcCCC
Q 038724 72 ------------ILSTKKFLLLLDDLW 86 (483)
Q Consensus 72 ------------~l~~~~~LlvlDdv~ 86 (483)
.-+++.+|+++||+.
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 346999999999973
No 396
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.64 E-value=0.02 Score=50.94 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE 61 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~ 61 (483)
.++.|.|++|+||||||.+++.... ..-..++|++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 4899999999999999998876551 12235778876543
No 397
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.60 E-value=0.045 Score=53.93 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKEL 62 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~ 62 (483)
..++|.|..|+|||+|+.++++.. +-+.++++-+++..
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~ 265 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERG 265 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSS
T ss_pred CeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccH
Confidence 478999999999999999998864 23467777666543
No 398
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.60 E-value=0.018 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHh
Q 038724 20 GIIGLFGTGGVGKTTILKQINN 41 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~ 41 (483)
.+++|.|+.|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4899999999999999999873
No 399
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.60 E-value=0.011 Score=50.59 Aligned_cols=111 Identities=13% Similarity=0.091 Sum_probs=68.0
Q ss_pred hhcCCCccEEEccCC-ccCc----cCCcccccCcCCCEEeccCCCCCcc-----CccccCCcCCCEEecCCCCCcCCCCC
Q 038724 338 FQFMPCLKVLNLSYN-RFLT----KLPSGISKLVSLQHLDISFTSTLEL-----PEELKALEKLKYLDMDDHQQVMEEGN 407 (483)
Q Consensus 338 ~~~l~~L~~L~l~~n-~~~~----~~p~~~~~l~~L~~L~l~~~~i~~l-----p~~~~~l~~L~~L~l~~n~~~~~p~~ 407 (483)
+..-+.|+.|+|++| .+.. .+-+.+..-+.|+.|+|++|.++.- -..+..-+.|++|+|++|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~--- 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE--- 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH---
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH---
Confidence 344566777777764 3221 1223445557788888888887642 23345557899999999996421
Q ss_pred CCCccchhhHhhhccccccccceeecc---Cc---------cccCCCCCcccccceeeee
Q 038724 408 CQSDDAESLLKEMLCLEQLNIIRLTSC---SL---------CSLCGLPTVQCLTSRRLNL 455 (483)
Q Consensus 408 ~~l~~~~~~~~~l~~l~~L~~L~l~~~---~l---------~~l~~l~~l~~l~l~~~~~ 455 (483)
....+.+.+..=+.|+.|++++| .+ ..+..-+.|..|+++.+.+
T Consensus 114 ----Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 ----LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp ----HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred ----HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 11234445666678999999865 33 1234445666776655443
No 400
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.58 E-value=0.04 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|+|+|+.|.|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44699999999999999999998765
No 401
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.58 E-value=0.021 Score=55.39 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=43.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCC-CCCEEEEEEeCCCc-CccchhHHh--------------------------
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERP-GFDVVIWVVVSKEL-KLETSQDDM-------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-~f~~~~~v~~~~~~-~~~~~~~~i-------------------------- 71 (483)
..++|.|.+|+|||+|+..++++...... .-+.++++-+++.. ...++.+++
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 36788999999999999999998721111 11345666555433 233444333
Q ss_pred -----------h-hcCCcEEEEEcCC
Q 038724 72 -----------I-LSTKKFLLLLDDL 85 (483)
Q Consensus 72 -----------~-l~~~~~LlvlDdv 85 (483)
. -+++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 3 3689999999997
No 402
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.58 E-value=0.019 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+++|+|++|+||||+++.++...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4699999999999999999998766
No 403
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.56 E-value=0.02 Score=48.01 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++++|+|++|+|||||++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998765
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.51 E-value=0.02 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|.|.|++|+||||+|+.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 405
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.51 E-value=0.027 Score=47.89 Aligned_cols=24 Identities=42% Similarity=0.441 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|.|++..|.||||.|-..+-+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA 52 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARA 52 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 466677777799999999888776
No 406
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.51 E-value=0.017 Score=49.17 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 21 IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998876
No 407
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.51 E-value=0.033 Score=51.04 Aligned_cols=24 Identities=25% Similarity=0.601 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|.|-||+||||+|..++...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHH
Confidence 678889999999999999998876
No 408
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.50 E-value=0.014 Score=51.68 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=16.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHH-hhc
Q 038724 20 GIIGLFGTGGVGKTTILKQIN-NRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~-~~~ 43 (483)
.+++|+|+.|+|||||++.++ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 543
No 409
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.50 E-value=0.092 Score=42.97 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
--|+|+|.+|+|||||..++....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999987654
No 410
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.46 E-value=0.067 Score=49.87 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=35.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhccc-----------CCCCC--CEEEEEEeCCCcCccchhH
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCS-----------ERPGF--DVVIWVVVSKELKLETSQD 69 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~-----------~~~~f--~~~~~v~~~~~~~~~~~~~ 69 (483)
-.++.|+|.+|+|||++|.+++..... ..+.. ..++|++....++..++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~ 161 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ 161 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH
Confidence 368999999999999999998865300 01111 4688998887765554443
No 411
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.41 E-value=0.034 Score=54.15 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=42.6
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCEEEEEEeCCCcC-ccchhHHh--------------------------
Q 038724 20 GIIGLFGTGGVGKTTIL-KQINNRFCSERPGFDVVIWVVVSKELK-LETSQDDM-------------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa-~~~~~~~~~~~~~f~~~~~v~~~~~~~-~~~~~~~i-------------------------- 71 (483)
..++|.|..|+|||+|| ..++++. ..-..++++-+++... ..++.+++
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 46899999999999996 5676643 2222356776665432 33444443
Q ss_pred -----------hhcCCcEEEEEcCCC
Q 038724 72 -----------ILSTKKFLLLLDDLW 86 (483)
Q Consensus 72 -----------~l~~~~~LlvlDdv~ 86 (483)
.-+++.+|+++||+.
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChH
Confidence 346899999999984
No 412
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.35 E-value=0.039 Score=51.59 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=34.1
Q ss_pred HHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcC
Q 038724 12 RFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELK 63 (483)
Q Consensus 12 ~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~ 63 (483)
..+.+...+++.+.|-||+||||+|..++... . ..-..++-++.....+
T Consensus 9 ~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l-a--~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 9 SILDQRSLRWIFVGGKGGVGKTTTSCSLAIQL-A--KVRRSVLLLSTDPAHN 57 (334)
T ss_dssp HHHHCTTCCEEEEECSTTSSHHHHHHHHHHHH-T--TSSSCEEEEECCSSCH
T ss_pred HHhcCCCeEEEEEeCCCCccHHHHHHHHHHHH-H--hCCCcEEEEECCCCCC
Confidence 34455556788899999999999999998877 2 2223456666554433
No 413
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.33 E-value=0.021 Score=50.21 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||.+.++.-. ....+.+++
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 63 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD----APTEGKVFL 63 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 489999999999999999997644 233455544
No 414
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.32 E-value=0.024 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
.+|.|.|++|+||||+|+.++++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 415
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.32 E-value=0.021 Score=55.40 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|.|+|++|.||||+|+.++++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998765
No 416
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.30 E-value=0.021 Score=50.53 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=25.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||++.++.-. ....+.+++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~I~~ 64 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD----KPTEGEVYI 64 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC----CCCceEEEE
Confidence 489999999999999999997644 233455554
No 417
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.28 E-value=0.13 Score=42.19 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
--|+|+|.+|+|||||...+....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998654
No 418
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.27 E-value=0.014 Score=48.74 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|.+|.|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998766
No 419
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.26 E-value=0.046 Score=50.81 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+++|+|++|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998766
No 420
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.24 E-value=0.025 Score=50.23 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|.|+.|.|||||.+.++.-. ....+.+++
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 57 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV----KPDRGEVRL 57 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 689999999999999999998754 223455554
No 421
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.23 E-value=0.033 Score=52.41 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=33.2
Q ss_pred HHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC
Q 038724 11 WRFLVKKDVGIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE 61 (483)
Q Consensus 11 ~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~ 61 (483)
...+.....+++.+.|-||+||||+|..++... .....-..++-++....
T Consensus 10 ~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 10 ESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPA 59 (348)
T ss_dssp HHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSS
T ss_pred HHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCC
Confidence 344555566899999999999999999998776 20022223555555433
No 422
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.21 E-value=0.042 Score=53.16 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++|.++|++|+||||++..++...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998776
No 423
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.19 E-value=0.037 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.++.|+|++|+|||||+..++...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999999988654
No 424
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.18 E-value=0.021 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
.+++|.|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999998764
No 425
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.15 E-value=0.051 Score=48.65 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=28.0
Q ss_pred HHHHHHHhcC-C-eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 8 YQVWRFLVKK-D-VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 8 ~~l~~~l~~~-~-~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+..++... . ...+.++|++|.|||.+|.++++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3456666654 2 3479999999999999999999854
No 426
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.14 E-value=0.051 Score=53.75 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE 61 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~ 61 (483)
..++|.|..|+|||+|+.++++.. +-+.++++-+++.
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER 269 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGER 269 (600)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEEC
T ss_pred CEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEeccc
Confidence 478999999999999999999865 2345666655543
No 427
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.14 E-value=0.024 Score=52.12 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+++|+|++|+||||++..++...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998766
No 428
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.12 E-value=0.048 Score=51.44 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+++|+|+.|+||||+++.++...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4699999999999999999998876
No 429
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.08 E-value=0.046 Score=51.69 Aligned_cols=30 Identities=33% Similarity=0.325 Sum_probs=23.2
Q ss_pred HhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 14 LVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 14 l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+......++.+.|-||+||||+|..++...
T Consensus 13 ~~~~~~~i~v~sgKGGvGKTTvaanLA~~l 42 (354)
T 2woj_A 13 ITSTTHKWIFVGGKGGVGKTTSSCSIAIQM 42 (354)
T ss_dssp HTCSSCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 333344567777999999999999988776
No 430
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.07 E-value=0.033 Score=51.38 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+++|+|+.|+||||+++.++...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998876
No 431
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.04 E-value=0.029 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|.|++|+|||||++.++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998654
No 432
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.03 E-value=0.026 Score=50.03 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|+.|.|||||++.++.-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997644
No 433
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.03 E-value=0.032 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+++|+|++|+||||++..++...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 35699999999999999999998876
No 434
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.03 E-value=0.036 Score=54.20 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=43.1
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHhhccc---CCCCCC-EEEEEEeCCCc-CccchhHHh----------------------
Q 038724 20 GIIGLFGTGGVGKTTIL-KQINNRFCS---ERPGFD-VVIWVVVSKEL-KLETSQDDM---------------------- 71 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa-~~~~~~~~~---~~~~f~-~~~~v~~~~~~-~~~~~~~~i---------------------- 71 (483)
..++|.|.+|+|||+|| ..+++.... ..++-+ .++++-+++.. ...++.+++
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~ 242 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPL 242 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHH
Confidence 46899999999999995 567666510 012233 35666666543 233444433
Q ss_pred ---------------hhcCCcEEEEEcCCC
Q 038724 72 ---------------ILSTKKFLLLLDDLW 86 (483)
Q Consensus 72 ---------------~l~~~~~LlvlDdv~ 86 (483)
.-+++.+|+++||+.
T Consensus 243 r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 243 QYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 346899999999974
No 435
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.01 E-value=0.13 Score=43.17 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
--|+|+|.+|+|||||...+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998654
No 436
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.99 E-value=0.026 Score=51.18 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||++.++--. ....+.+++
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~----~p~~G~I~~ 67 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL----KPSSGRILF 67 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC----CCCCeEEEE
Confidence 489999999999999999997644 234555555
No 437
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.98 E-value=0.027 Score=50.83 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||.+.++.-. ....+.+++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 65 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE----KPSEGAIIV 65 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 489999999999999999997644 233455555
No 438
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.98 E-value=0.19 Score=41.76 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.-|+|+|.+|+|||||..++....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998654
No 439
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.97 E-value=0.14 Score=43.26 Aligned_cols=24 Identities=42% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
--|+|+|.+|+|||||++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999998776654
No 440
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.96 E-value=0.15 Score=43.36 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....|+|+|.+|+|||||...+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 441
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.95 E-value=0.019 Score=58.47 Aligned_cols=43 Identities=16% Similarity=0.020 Sum_probs=30.4
Q ss_pred CCChhHHHHHHHHHhcCCeE-----------EEEEEcCCCCcHHHHHHHHHhhc
Q 038724 1 IENPKQFYQVWRFLVKKDVG-----------IIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 1 vgr~~~~~~l~~~l~~~~~~-----------~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+|.++....+...+..+..+ .|.++|++|+|||+||+++++..
T Consensus 298 ~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 298 YGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 46666555554444433222 58999999999999999998865
No 442
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.94 E-value=0.031 Score=53.24 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999876
No 443
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.93 E-value=0.049 Score=50.27 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|.|++|+|||||.+.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 488999999999999999998 55
No 444
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.91 E-value=0.036 Score=47.77 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 7 FYQVWRFLVKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 7 ~~~l~~~l~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+.+.+.......-.|+|+|.+|+|||||...+....
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3334344444445578999999999999999988654
No 445
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.91 E-value=0.034 Score=49.00 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...|+|.|++|+||||+++.+++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999988
No 446
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.89 E-value=0.055 Score=45.93 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998754
No 447
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.89 E-value=0.032 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
.+++|.|+.|.|||||++.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 448
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.88 E-value=0.034 Score=47.40 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...|+|+|.+|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 449
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.88 E-value=0.091 Score=48.33 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.9
Q ss_pred CCeEEEEEEcC-CCCcHHHHHHHHHhhc
Q 038724 17 KDVGIIGLFGT-GGVGKTTILKQINNRF 43 (483)
Q Consensus 17 ~~~~~v~i~G~-~GiGKTtLa~~~~~~~ 43 (483)
...++|.|+|. ||+||||+|..++...
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~l 129 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVI 129 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence 45679999986 7999999999998766
No 450
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.87 E-value=0.029 Score=49.84 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||.+.++--. ....+.+++
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 65 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV----RAQKGKIIF 65 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 489999999999999999997744 233555555
No 451
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.87 E-value=0.029 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.674 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|+.|.|||||++.++.-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 489999999999999999997754
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.87 E-value=0.04 Score=45.53 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|+|+|.+|+|||||...+....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998643
No 453
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.86 E-value=0.051 Score=54.51 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=30.2
Q ss_pred ChhHHHHHHHHHh--cCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 3 NPKQFYQVWRFLV--KKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 3 r~~~~~~l~~~l~--~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
|.+..+.+.+... .....+|.++|++|+||||+|+.+.+..
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 3445555555552 2335689999999999999999998875
No 454
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.85 E-value=0.043 Score=55.39 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|.|.|++|.||||+|+.+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 455
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.85 E-value=0.059 Score=50.38 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=23.5
Q ss_pred hcCCeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 15 VKKDVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 15 ~~~~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+...+++.+.|-||+||||+|..++...
T Consensus 15 ~~~~~~i~v~sgkGGvGKTTva~~LA~~l 43 (329)
T 2woo_A 15 EQTSLKWIFVGGKGGVGKTTTSCSLAIQM 43 (329)
T ss_dssp HCTTCCEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34445677788999999999999998876
No 456
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.84 E-value=0.067 Score=50.43 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=29.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhcccCC---CCC-CEEEEEEeCCC
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRFCSER---PGF-DVVIWVVVSKE 61 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~~f-~~~~~v~~~~~ 61 (483)
-.++.|+|++|+|||||+..++... ... +.. ..++|++....
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCC
Confidence 3699999999999999999998764 111 111 23588876554
No 457
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.84 E-value=0.2 Score=42.42 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..-|+|+|.+|+|||||...+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998754
No 458
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.84 E-value=0.039 Score=45.10 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
+.|+|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998754
No 459
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.83 E-value=0.039 Score=49.05 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...|+|.|+.|+||||+++.+++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
No 460
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.83 E-value=0.07 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|+|+|.+|+|||||..++....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999998643
No 461
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.83 E-value=0.1 Score=47.30 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=27.3
Q ss_pred HHHHHHHHHh----cCCeEEEEEEcC-CCCcHHHHHHHHHhhc
Q 038724 6 QFYQVWRFLV----KKDVGIIGLFGT-GGVGKTTILKQINNRF 43 (483)
Q Consensus 6 ~~~~l~~~l~----~~~~~~v~i~G~-~GiGKTtLa~~~~~~~ 43 (483)
.+..|+..+. +...++|.|+|. ||+||||+|..++...
T Consensus 65 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~l 107 (271)
T 3bfv_A 65 KFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAY 107 (271)
T ss_dssp HHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 3444444443 235678999875 8999999999998866
No 462
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.83 E-value=0.037 Score=49.76 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999998866
No 463
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.82 E-value=0.03 Score=50.35 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=25.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||.+.++.-. ....+.+++
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 66 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL----KADEGRVYF 66 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 489999999999999999997654 223455554
No 464
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.82 E-value=0.16 Score=42.90 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..-|+|+|.+|+|||||...+....
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998654
No 465
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.81 E-value=0.03 Score=50.46 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||++.++.-. ....+.+++
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 83 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE----DFDEGEIII 83 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC----CCCCcEEEE
Confidence 489999999999999999997654 223455555
No 466
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.78 E-value=0.026 Score=49.14 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=25.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||.+.++.-. ....+.+++
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 68 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL----KPLKGEIIY 68 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEE
Confidence 378999999999999999997754 223455554
No 467
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.78 E-value=0.034 Score=50.28 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
.+++|+|+.|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 468
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.76 E-value=0.049 Score=52.39 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+++|+|+.|+|||||.+.++...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34699999999999999999998743
No 469
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.76 E-value=0.16 Score=43.44 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...-|+|+|.+|+|||||+..+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 44578999999999999999998755
No 470
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.76 E-value=0.032 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|+.|.|||||.+.++.-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997754
No 471
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.75 E-value=0.067 Score=49.16 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCeEEEEEEc---CCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCC
Q 038724 6 QFYQVWRFLVKKDVGIIGLFG---TGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKE 61 (483)
Q Consensus 6 ~~~~l~~~l~~~~~~~v~i~G---~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~ 61 (483)
.++++.+.+... .++|+|++ -||+||||+|..++... ...+ ..++-|+....
T Consensus 22 ~~~~~~r~~~~~-~~~i~v~~~s~KGGvGKTT~a~nLA~~l-a~~G--~rVlliD~D~q 76 (298)
T 2oze_A 22 ILEELRRILSNK-NEAIVILNNYFKGGVGKSKLSTMFAYLT-DKLN--LKVLMIDKDLQ 76 (298)
T ss_dssp HHHHHHHHHHHH-CSCEEEEECCSSSSSSHHHHHHHHHHHH-HHTT--CCEEEEEECTT
T ss_pred HHHHHHHHhcCC-CcEEEEEeccCCCCchHHHHHHHHHHHH-HhCC--CeEEEEeCCCC
Confidence 345566655543 35677765 89999999999998766 2221 23555555543
No 472
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.75 E-value=0.032 Score=49.82 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||++.++.-. ....+.+++
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~i 68 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY----IPENGQVLI 68 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 489999999999999999997754 233455555
No 473
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.72 E-value=0.062 Score=52.65 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+++|+|+.|+||||+++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34699999999999999999998766
No 474
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.70 E-value=0.045 Score=54.86 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
-.+++|+|+.|.|||||++.++...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhh
Confidence 3689999999999999999999876
No 475
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.70 E-value=0.22 Score=42.15 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998654
No 476
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.69 E-value=0.052 Score=50.72 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=29.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCC
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSK 60 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~ 60 (483)
.++.|.|.+|+||||+|..++.... . .-..++|++...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a-~--~g~~Vl~fSlEm 84 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSAL-N--DDRGVAVFSLEM 84 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-H--TTCEEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH-H--cCCeEEEEeCCC
Confidence 4899999999999999999988762 2 234577777653
No 477
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.68 E-value=0.041 Score=49.52 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.-.+++|+|+.|.||||+++.++...
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 33699999999999999999987654
No 478
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.68 E-value=0.03 Score=47.29 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 038724 21 IIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 21 ~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999763
No 479
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.68 E-value=0.1 Score=49.75 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.4
Q ss_pred CeEEEEEE-cCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLF-GTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~-G~~GiGKTtLa~~~~~~~ 43 (483)
..++|+|+ |-||+||||+|..++...
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~L 168 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAH 168 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHH
Confidence 56889888 589999999999998766
No 480
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.67 E-value=0.036 Score=49.37 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|+.|.|||||.+.++.-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 481
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.2 Score=42.91 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..-|+|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4568999999999999999987654
No 482
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.66 E-value=0.036 Score=51.03 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|.|++|+|||||++.++...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998766
No 483
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.66 E-value=0.033 Score=49.96 Aligned_cols=33 Identities=36% Similarity=0.517 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|.|+.|.|||||.+.++--. ....+.+++
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 74 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI----KPSSGIVTV 74 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC----CCCceEEEE
Confidence 489999999999999999997644 233455555
No 484
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.65 E-value=0.1 Score=61.71 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEEEeCCCcCccchhHHh-----------------hhcCCcEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWVVVSKELKLETSQDDM-----------------ILSTKKFLLLL 82 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v~~~~~~~~~~~~~~i-----------------~l~~~~~Llvl 82 (483)
+-|.++|++|+|||++|+.+.... .-.....+..+...+...+...+ ...++++++++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Q ss_pred cCCC
Q 038724 83 DDLW 86 (483)
Q Consensus 83 Ddv~ 86 (483)
||++
T Consensus 1343 DEin 1346 (2695)
T 4akg_A 1343 DEIN 1346 (2695)
T ss_dssp ETTT
T ss_pred cccc
No 485
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.58 E-value=0.035 Score=49.98 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=25.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||++.++.-. . . .+.+++
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~---~-~-~G~I~i 78 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY---D-A-EGDIKI 78 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS---C-C-EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhccC---C-C-CeEEEE
Confidence 489999999999999999998754 2 2 466655
No 486
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.58 E-value=0.038 Score=47.37 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...|+|+|.+|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998754
No 487
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.57 E-value=0.035 Score=50.30 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||++.++.-. ....+.+++
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~----~p~~G~I~~ 78 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY----QPTGGKVLL 78 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC----CCCCCEEEE
Confidence 489999999999999999997754 233555655
No 488
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.56 E-value=0.035 Score=49.53 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|+.|.|||||.+.++.-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999998754
No 489
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.51 E-value=0.12 Score=48.34 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..++|+|+.|.|||||++.++.-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999998765
No 490
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.25 Score=41.67 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..|+|+|.+|+|||||...+....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 491
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.47 E-value=0.054 Score=45.71 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhh
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 492
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.46 E-value=0.042 Score=50.54 Aligned_cols=24 Identities=13% Similarity=0.336 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|+|+.|.|||||++.+..-.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 589999999999999999998754
No 493
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.44 E-value=0.038 Score=49.95 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||.+.++.-. ....+.+++
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~----~p~~G~I~~ 66 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI----EPTSGDVLY 66 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEE
Confidence 489999999999999999997644 233555555
No 494
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.43 E-value=0.038 Score=50.30 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=25.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCEEEEE
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRFCSERPGFDVVIWV 56 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~~f~~~~~v 56 (483)
.+++|+|+.|.|||||.+.++.-. ....+.+++
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~ 80 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE----PATSGTVNL 80 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC----CCCCeEEEE
Confidence 489999999999999999997754 223455554
No 495
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.41 E-value=0.043 Score=48.59 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+|+|.|+.|.||||+++.++...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999998865
No 496
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.41 E-value=0.046 Score=45.23 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhh
Q 038724 20 GIIGLFGTGGVGKTTILKQINNR 42 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~ 42 (483)
+-|.|.|.+|+||||+|.+...+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46889999999999999999774
No 497
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.40 E-value=0.038 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 20 GIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 20 ~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++|.|+.|.|||||.+.++.-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997754
No 498
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.36 E-value=0.041 Score=52.34 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
...+++|+|++|.|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44699999999999999999999754
No 499
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.34 E-value=0.074 Score=49.59 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 19 VGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 19 ~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
.+++.+.|-||+||||+|..++...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~l 38 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWM 38 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Confidence 4577778999999999999998876
No 500
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.32 E-value=0.15 Score=48.13 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHhhc
Q 038724 18 DVGIIGLFGTGGVGKTTILKQINNRF 43 (483)
Q Consensus 18 ~~~~v~i~G~~GiGKTtLa~~~~~~~ 43 (483)
..+++.+.|-||+||||+|..++...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~l 50 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYL 50 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHH
Confidence 44566777999999999999998876
Done!