BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038725
         (244 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q94BT2|AIR12_ARATH Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana
           GN=AIR12 PE=1 SV=3
          Length = 252

 Score = 64.3 bits (155), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 22/170 (12%)

Query: 24  TITATKTFQKCMTLPTQQASLAWTFHAHNATLDLCFFGTFISPS----GWVGWGINPSSP 79
            + +   F  C  LP   + L +T+++ N++L + F  T   PS    GWV W INP+  
Sbjct: 33  NLNSAGPFDSCEDLPVLNSYLHYTYNSSNSSLSVAFVAT---PSQANGGWVAWAINPTGT 89

Query: 80  EMTGTRALVAFPDPNSGQLVLLPYILDPTVKLQKSPLLSRPLDI-NLISSSATLYGGKMA 138
           +M G++A +A+        V+  Y +     L +  L     D  NL + S  L GG++A
Sbjct: 90  KMAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLA---FDFWNLRAES--LSGGRIA 144

Query: 139 TIHNGASVQIFATLKLSPNKTKIHHVWNRGLYVQGYSPTIHPTTSNDLSS 188
                    IF T+K+      ++ VW  G  V    P +HP   ++L S
Sbjct: 145 ---------IFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGS 185


>sp|Q8TEM1|PO210_HUMAN Nuclear pore membrane glycoprotein 210 OS=Homo sapiens GN=NUP210 PE=1
            SV=3
          Length = 1887

 Score = 34.7 bits (78), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 82   TGTRALVAFPDPNSGQLVLLPYILDPTVKLQ---KSPLLSRPLDINLISSSATLYGGKMA 138
            TG R +V   DP SGQL  L   L   +++Q   K  LL+  ++   I  S   Y  K+ 
Sbjct: 1251 TGLRVVVKAVDPTSGQLYGLARELSDEIQVQVFEKLQLLNPEIEAEQILMSPNSY-IKLQ 1309

Query: 139  TIHNGASVQIFATLKLSPNKTKIHHVWNRGLYVQG 173
            T  +GA+   +  L   P K  + HV  +G    G
Sbjct: 1310 TNRDGAASLSYRVLD-GPEKVPVVHVDEKGFLASG 1343


>sp|P11654|PO210_RAT Nuclear pore membrane glycoprotein 210 OS=Rattus norvegicus GN=Pom210
            PE=1 SV=1
          Length = 1886

 Score = 33.5 bits (75), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 82   TGTRALVAFPDPNSGQLVLLPYILDPTVKLQ---KSPLLSRPLDINLISSSATLYGGKMA 138
            TG R +V   DP +GQL  L   L   +++Q   K  LL+  ++   I  S   +  K+ 
Sbjct: 1251 TGLRVVVKALDPTAGQLHGLGKELSDEIQIQVFEKLRLLNPEVEAEQILMSPNSF-IKLQ 1309

Query: 139  TIHNGASVQIFATLKLSPNKTKIHHVWNRGLYVQG 173
            T  +GA++  +  L   P K  I H+  +G  V G
Sbjct: 1310 TNRDGAAILSYRVLD-GPEKAPIVHIDEKGFLVSG 1343


>sp|Q9QY81|PO210_MOUSE Nuclear pore membrane glycoprotein 210 OS=Mus musculus GN=Nup210 PE=1
            SV=2
          Length = 1886

 Score = 32.7 bits (73), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 82   TGTRALVAFPDPNSGQLVLLPYILDPTVKLQ---KSPLLSRPLDINLISSSATLYGGKMA 138
            TG R +V   DP +GQL  L   L   +++Q   K  LL+  ++   I  S   +  K+ 
Sbjct: 1251 TGLRVVVKALDPTAGQLHGLGKELSDEIQIQVFEKLRLLNPEIEAEQILMSPNSF-IKLQ 1309

Query: 139  TIHNGASVQIFATLKLSPNKTKIHHVWNRGLYVQG 173
            T  +GA++  +  L   P K  I H   +G  V G
Sbjct: 1310 TNRDGAAILSYRVLD-GPEKAPIVHTDEKGFLVSG 1343


>sp|P46019|KPB2_HUMAN Phosphorylase b kinase regulatory subunit alpha, liver isoform
           OS=Homo sapiens GN=PHKA2 PE=1 SV=1
          Length = 1235

 Score = 30.8 bits (68), Expect = 8.0,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 160 KIHHVWNRGLYV------QGY--SPTIHPTTSNDLSSIATIDVMSGSTAAQHSNIKTLRM 211
           K+ H+W + LY+      +G+  +  I P      +S+    V+  +  A++++IK L  
Sbjct: 397 KVPHLWGQSLYILSSLLAEGFLAAGEIDPLNRRFSTSVKPDVVVQVTVLAENNHIKDLLR 456

Query: 212 VHGIINAVAWGVLLPIGAVTARYLRHIQA 240
            HG +N  +   + PI     R L HI A
Sbjct: 457 KHG-VNVQSIADIHPIQVQPGRILSHIYA 484


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.133    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,709,291
Number of Sequences: 539616
Number of extensions: 3398416
Number of successful extensions: 7285
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7282
Number of HSP's gapped (non-prelim): 10
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)