Query 038725
Match_columns 244
No_of_seqs 126 out of 288
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4293 Predicted membrane pro 100.0 4.1E-29 8.9E-34 235.2 12.0 223 7-244 8-246 (403)
2 PF04526 DUF568: Protein of un 99.9 5.9E-25 1.3E-29 169.7 11.5 100 81-194 1-101 (101)
3 smart00664 DoH Possible catech 99.8 7.8E-19 1.7E-23 143.1 18.1 136 41-197 3-146 (148)
4 PF03351 DOMON: DOMON domain; 99.6 1.4E-13 3.1E-18 108.3 15.2 109 41-168 4-124 (124)
5 cd00241 CDH_cytochrome Cellobi 99.0 8.9E-09 1.9E-13 87.8 13.5 123 53-198 40-175 (184)
6 cd08760 Cyt_b561_FRRS1_like Eu 98.3 2.1E-06 4.6E-11 73.0 6.9 32 205-236 31-62 (191)
7 KOG3568 Dopamine beta-monooxyg 97.3 0.002 4.3E-08 61.9 9.8 73 29-107 31-104 (603)
8 PF10348 DUF2427: Domain of un 96.7 0.0025 5.3E-08 49.7 4.2 31 204-234 12-42 (105)
9 PLN02351 cytochromes b561 fami 84.8 0.72 1.6E-05 41.1 2.5 29 209-237 49-78 (242)
10 cd08762 Cyt_b561_CYBASC3 Verte 49.5 11 0.00024 32.1 1.8 29 208-236 33-61 (179)
11 PLN02810 carbon-monoxide oxyge 40.5 19 0.00041 32.0 1.9 31 207-237 44-74 (231)
12 PF11014 DUF2852: Protein of u 34.3 50 0.0011 26.2 3.2 24 212-235 10-33 (115)
13 PLN02680 carbon-monoxide oxyge 27.2 31 0.00068 30.6 1.1 29 208-236 45-73 (232)
14 KOG1619 Cytochrome b [Energy p 26.8 18 0.00039 32.3 -0.4 30 207-236 52-81 (245)
15 PF11120 DUF2636: Protein of u 23.2 93 0.002 22.0 2.7 19 220-238 13-31 (62)
16 PF00333 Ribosomal_S5: Ribosom 23.0 1.1E+02 0.0023 21.8 3.0 15 57-74 27-41 (67)
17 PF14558 TRP_N: ML-like domain 22.9 1.3E+02 0.0028 24.2 4.0 34 29-62 5-39 (141)
18 PF06510 DUF1102: Protein of u 21.4 93 0.002 25.7 2.7 32 46-78 18-49 (146)
No 1
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=99.96 E-value=4.1e-29 Score=235.23 Aligned_cols=223 Identities=35% Similarity=0.618 Sum_probs=184.1
Q ss_pred HHHHhhhhcccccC--Ccc--cccCCcccCcccccCCCCcEEEEEEecCCceEEEEEEEecCCCCceEEEEECCCCCCCC
Q 038725 7 FFLYTSHLRVVLSS--HCS--TITATKTFQKCMTLPTQQASLAWTFHAHNATLDLCFFGTFISPSGWVGWGINPSSPEMT 82 (244)
Q Consensus 7 ~~~~~~~~~~~~~~--~C~--~~~~~~~~~~C~~l~~~~~~L~wt~~~~~~tl~~a~sa~~~~~~GWVa~G~n~~g~~M~ 82 (244)
|.|..++..++.++ .|. ++..++.|..|.++|++++++|++|++++++++++|+++. ...|++|+|||++.+|+
T Consensus 8 ~~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~c~~lp~~~~~i~~~~~~~~~~~~i~~~~~~--~~~w~~~~~~p~~t~m~ 85 (403)
T KOG4293|consen 8 FALLFSLTSPAFSQTDTCSSQTFNIDKSFDSCVDLPTLNSFIHYTYNSANGVLSIAFSAPL--SSAWVAWAINPTGTGMV 85 (403)
T ss_pred HhHHHhccCchhhhhcceeeeeccCCccccccccCCCCCceEEEEEecCCCeEEEEEecCC--cccccccccCCcccccc
Confidence 33333444454444 698 8888999999999999999999999999999999999974 34499999999998899
Q ss_pred CCcEEEEEecCCCCeeEEEEEeecCccccccCCCCCCCcceeeccCcccccCCceeEEEcCCE---EEEEEEEeeC-CCC
Q 038725 83 GTRALVAFPDPNSGQLVLLPYILDPTVKLQKSPLLSRPLDINLISSSATLYGGKMATIHNGAS---VQIFATLKLS-PNK 158 (244)
Q Consensus 83 Gs~a~Va~~~~~~G~~~v~~y~l~g~~~~~~~~~~~~~l~~~v~~~~~~~~~g~~s~~~~~~~---~~if~t~~l~-~~~ 158 (244)
|++++|++..+.+|...+++|++.+ +.+...+..+.+++.+. .++..... +.+|++++++ .+.
T Consensus 86 ~~~~~va~~~~~~g~~~~~t~~~~~----~~~s~~~~~~~~~~~~~---------~~~~~~~~~~~~~if~~~~l~~~~~ 152 (403)
T KOG4293|consen 86 GSRALVAYAGSSSGATTVKTYVILG----YSPSLVPALLSFTLGNV---------RAECNLRSSSPIGIFASFKLAGANG 152 (403)
T ss_pred ccceeeeeeccccchhhceeeeecc----cchhhcccccceeeecC---------cchhhccCCCCceEEEEEEeecCCC
Confidence 9999999999668999999999999 75545556677777776 55564444 7899999999 678
Q ss_pred CceeEEEeeccccC-CCCCccCCCCCCCCcceEEEEeec--Ccccc-c----cCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 038725 159 TKIHHVWNRGLYVQ-GYSPTIHPTTSNDLSSIATIDVMS--GSTAA-Q----HSNIKTLRMVHGIINAVAWGVLLPIGAV 230 (244)
Q Consensus 159 ~~~~~Iwa~G~~~~-~~~~~~H~~~~~n~~s~~~ldl~s--G~~~~-~----~~~~~~~~~~HG~Lm~vaWgvLlPiG~i 230 (244)
..++++|++|+... ++.+.+|.....+..+...+|+.. |.... . .....++++.||++|+++|++|+|+|++
T Consensus 153 ~~~~~~w~~~~~~~~g~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil~~~sw~il~p~g~i 232 (403)
T KOG4293|consen 153 GKYSAVWQVGPTGSGGGRPKRHKLSGSNLASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGILNALSWGILFPAGAI 232 (403)
T ss_pred ceeEEEEEccCCccCCCCCccCccccCCccceeecccccccccccccccCcccCcchhccccHHHHhhhhhheeccccce
Confidence 89999999998764 789999999999999999999987 43322 1 2333467777999999999999999999
Q ss_pred HHHhhccccccCCC
Q 038725 231 TARYLRHIQALGPS 244 (244)
Q Consensus 231 ~ARYlk~~~~~dPa 244 (244)
+|||+|+++.+||.
T Consensus 233 ~ary~~~~~~~~~~ 246 (403)
T KOG4293|consen 233 IARYLRQKPSGDPT 246 (403)
T ss_pred eEEEecccCCCCcc
Confidence 99999999888874
No 2
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=99.92 E-value=5.9e-25 Score=169.68 Aligned_cols=100 Identities=39% Similarity=0.638 Sum_probs=95.7
Q ss_pred CCCCcEEEEEecCCC-CeeEEEEEeecCccccccCCCCCCCcceeeccCcccccCCceeEEEcCCEEEEEEEEeeCCCCC
Q 038725 81 MTGTRALVAFPDPNS-GQLVLLPYILDPTVKLQKSPLLSRPLDINLISSSATLYGGKMATIHNGASVQIFATLKLSPNKT 159 (244)
Q Consensus 81 M~Gs~a~Va~~~~~~-G~~~v~~y~l~g~~~~~~~~~~~~~l~~~v~~~~~~~~~g~~s~~~~~~~~~if~t~~l~~~~~ 159 (244)
|+|++||||+++ ++ |.+.+++|.|++ |.+.+.+++|+|++++. ++|+++++|+||++++||.+.+
T Consensus 1 M~GtqALvAf~~-~~~G~~~v~T~~i~s----y~~~l~~~~lsf~v~~l---------sae~~~~~~~IfAtl~Lp~n~t 66 (101)
T PF04526_consen 1 MVGTQALVAFKN-SNGGSVTVYTYNITS----YSPSLQPGPLSFDVSDL---------SAEYSGGEMTIFATLKLPGNST 66 (101)
T ss_pred CCCceEEEEEeC-CCCceEEEEEEeecc----cccccccccccccccce---------EeEEeCCEEEEEEEEEcCCCCc
Confidence 999999999999 65 999999999999 87778999999999999 9999999999999999999999
Q ss_pred ceeEEEeeccccCCCCCccCCCCCCCCcceEEEEe
Q 038725 160 KIHHVWNRGLYVQGYSPTIHPTTSNDLSSIATIDV 194 (244)
Q Consensus 160 ~~~~Iwa~G~~~~~~~~~~H~~~~~n~~s~~~ldl 194 (244)
++|||||+|+.+.++.|.+|+++++|++|+++|||
T Consensus 67 ~vnhVWQ~G~~v~gg~p~~H~~~~~Nl~S~gtldl 101 (101)
T PF04526_consen 67 SVNHVWQVGPSVQGGSPQPHPTSGANLQSKGTLDL 101 (101)
T ss_pred EEEEEeCcCCccCCCccccCCCCCccccceEEecC
Confidence 99999999999988999999999999999999997
No 3
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=99.82 E-value=7.8e-19 Score=143.05 Aligned_cols=136 Identities=20% Similarity=0.353 Sum_probs=105.2
Q ss_pred CcEEEEEEecCCceEEEEEEEecCCCCceEEEEECCCCCCCCCCcEEEEEecCCCCeeEEEEEeecCccccccCCCCCCC
Q 038725 41 QASLAWTFHAHNATLDLCFFGTFISPSGWVGWGINPSSPEMTGTRALVAFPDPNSGQLVLLPYILDPTVKLQKSPLLSRP 120 (244)
Q Consensus 41 ~~~L~wt~~~~~~tl~~a~sa~~~~~~GWVa~G~n~~g~~M~Gs~a~Va~~~~~~G~~~v~~y~l~g~~~~~~~~~~~~~ 120 (244)
+..|+|+++.+ ++|.|+++++.. +.||||||||+++. |.|+|++|||.+ ++|.+.+++|++++ +..+...
T Consensus 3 ~~~l~W~~~~~-~~v~~~l~~~~~-~~gwvaiGfs~~~~-M~~~d~vv~~~~-~~g~~~v~d~~~~~----~~~~~~d-- 72 (148)
T smart00664 3 DYFLSWSVDGE-NSIAFELSGPTS-TNGWVAIGFSPDGQ-MAGADVVVAWVD-NNGRVTVKDYYTPG----YGPPVED-- 72 (148)
T ss_pred eEEEEEEECCC-CeEEEEEEEecC-CCCEEEEEECCCCC-cCCCCEEEEEEc-CCCCEEEEEEEcCC----CCCCCcC--
Confidence 45689999987 899999999632 39999999999965 999999999998 77999999999999 6543222
Q ss_pred cceeeccCcccccCCceeEEEcCCEEEEEEEEeeCCCCC--------ceeEEEeeccccCCCCCccCCCCCCCCcceEEE
Q 038725 121 LDINLISSSATLYGGKMATIHNGASVQIFATLKLSPNKT--------KIHHVWNRGLYVQGYSPTIHPTTSNDLSSIATI 192 (244)
Q Consensus 121 l~~~v~~~~~~~~~g~~s~~~~~~~~~if~t~~l~~~~~--------~~~~Iwa~G~~~~~~~~~~H~~~~~n~~s~~~l 192 (244)
...++.+. + .+++.++.++|.++++|.++++ ..++|||.|+...++.+..|... ..+..++
T Consensus 73 ~~~~~~~~--~------~~~~~~g~~~~~f~R~l~t~d~~d~~~~~~~~~~i~a~G~~~~~~~~~~H~~~---~~~~~~i 141 (148)
T smart00664 73 DQQDVTDL--L------SATYENGVLTCRFRRKLGSNDPDDKSLLDGTVHVLWAKGPLSPNGGLGYHDFS---LKSTKKV 141 (148)
T ss_pred cccccccc--e------eEEEECCEEEEEEEEEccCCCccccccCCCeEEEEEEECCCCCCCCeeecccc---ccCceEE
Confidence 22222221 0 4566899999988999987653 78999999984346789999863 3577888
Q ss_pred EeecC
Q 038725 193 DVMSG 197 (244)
Q Consensus 193 dl~sG 197 (244)
++.+.
T Consensus 142 ~~~~~ 146 (148)
T smart00664 142 CLSSC 146 (148)
T ss_pred EeccC
Confidence 88764
No 4
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=99.57 E-value=1.4e-13 Score=108.29 Aligned_cols=109 Identities=22% Similarity=0.398 Sum_probs=83.9
Q ss_pred CcEEEEEEecCCceEEEEEEEecCCCCceEEEEECCCCCCCCCCcEEEEEecCCCCeeEEEEEe-ecCccccccCC-CCC
Q 038725 41 QASLAWTFHAHNATLDLCFFGTFISPSGWVGWGINPSSPEMTGTRALVAFPDPNSGQLVLLPYI-LDPTVKLQKSP-LLS 118 (244)
Q Consensus 41 ~~~L~wt~~~~~~tl~~a~sa~~~~~~GWVa~G~n~~g~~M~Gs~a~Va~~~~~~G~~~v~~y~-l~g~~~~~~~~-~~~ 118 (244)
+..|.|+++.++.+|.|+++++. +..||||+||++++. |.++|+++|+.+ + |.+.+++|+ ..+ +.+| +++
T Consensus 4 ~~~l~w~~~~~~~~i~~~l~~~~-~~~~w~aiGfs~~~~-M~~~Dvv~~~~~-~-~~~~v~d~~~~~~----~~~p~~d~ 75 (124)
T PF03351_consen 4 NFSLSWTVDGDNNTIEFELTGPA-NTNGWVAIGFSDDGG-MGGSDVVVCWVD-D-GKVYVQDYYSTGG----YGPPTVDD 75 (124)
T ss_pred eEEEEEEEECCCCEEEEEEEecc-CCCCEEEEEEccccC-CCCCcEEEEEEc-C-CceeEEEeeccCc----ccceeecc
Confidence 34589999998899999999853 248999999999887 999999999997 4 899999999 888 6533 332
Q ss_pred C-CcceeeccCcccccCCceeEEEcCCEEEEEEEEeeCCC---------CCceeEEEeec
Q 038725 119 R-PLDINLISSSATLYGGKMATIHNGASVQIFATLKLSPN---------KTKIHHVWNRG 168 (244)
Q Consensus 119 ~-~l~~~v~~~~~~~~~g~~s~~~~~~~~~if~t~~l~~~---------~~~~~~Iwa~G 168 (244)
. .-++ ... ++.+.++.++|-++++|.+. ..++++|||+|
T Consensus 76 ~~~~~~--~~~---------~~~~~~g~~~~~F~R~l~t~d~~d~~l~~~~~~~~i~A~G 124 (124)
T PF03351_consen 76 QGSQDI--QLL---------SGSYSNGTTTCSFTRPLNTGDSQDYDLDSNGTYYVIWAYG 124 (124)
T ss_pred ccCCcE--EEE---------EEEEECCEEEEEEEEEccCCCCCccEecCCCcEEEEEEeC
Confidence 2 1222 223 55667888888778887662 35678999987
No 5
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=99.01 E-value=8.9e-09 Score=87.77 Aligned_cols=123 Identities=17% Similarity=0.248 Sum_probs=80.9
Q ss_pred ceEEEEEEEecCCCCceEEEEECCCCCCCCCCcEEEEEecCCCCeeEEEEEeecCccccccCC-CCCCCcceeeccCccc
Q 038725 53 ATLDLCFFGTFISPSGWVGWGINPSSPEMTGTRALVAFPDPNSGQLVLLPYILDPTVKLQKSP-LLSRPLDINLISSSAT 131 (244)
Q Consensus 53 ~tl~~a~sa~~~~~~GWVa~G~n~~g~~M~Gs~a~Va~~~~~~G~~~v~~y~l~g~~~~~~~~-~~~~~l~~~v~~~~~~ 131 (244)
..+-+.+++ |.+.||+|+|. |.+|.|+.++|+|.+ ++ ++++..|+.+| |.+| ...++..++++..++|
T Consensus 40 ~d~i~qi~a--P~~~gW~gls~---Gg~M~~~~L~vaw~~-g~-~Vt~S~R~atg----~~~P~~y~g~a~~t~L~gs~v 108 (184)
T cd00241 40 TEFIGELVA--PRASGWIGLAL---GGAMTNSLLLVAWPN-GN-QIVSSTRYATG----YTLPDAYTGPATITQLPSSSV 108 (184)
T ss_pred CCEEEEEeC--cCCCCeEEEee---cccCCCCeEEEEEcC-CC-eEEEeEEEecC----ccCCCccCCCceEEECCCCcE
Confidence 345555655 57799999999 888999999999997 54 59999999999 8755 5677777877765333
Q ss_pred ccCCceeEEE--cCCEEEEEEEEe----eCCCCCceeEEEeecccc------CCCCCccCCCCCCCCcceEEEEeecCc
Q 038725 132 LYGGKMATIH--NGASVQIFATLK----LSPNKTKIHHVWNRGLYV------QGYSPTIHPTTSNDLSSIATIDVMSGS 198 (244)
Q Consensus 132 ~~~g~~s~~~--~~~~~~if~t~~----l~~~~~~~~~Iwa~G~~~------~~~~~~~H~~~~~n~~s~~~ldl~sG~ 198 (244)
.++.+.+++ +|| .++. +..+... .++||.++.. ++..+.+|+ ..+.+.+||....
T Consensus 109 -n~t~~t~~~rC~nC-----~~W~~gg~~~~t~~~-~~~wA~~~~~~~~p~~~~a~i~~Hd-----~~G~f~~dl~~A~ 175 (184)
T cd00241 109 -NSTHWKLVFRCQNC-----TSWNNGGGIDPTSQG-VLAWAFSNVAVDDPSDPQSTFSEHT-----DFGFFGINLSDAQ 175 (184)
T ss_pred -eCCEEEEEEEeCCC-----cccCCCCccCcCCCc-eEEEEECCCCCCCCCCcccCCceec-----CCcceeEechhcc
Confidence 122222222 222 1111 1111222 6899986221 256688998 3467999998654
No 6
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=98.27 E-value=2.1e-06 Score=73.04 Aligned_cols=32 Identities=50% Similarity=0.969 Sum_probs=29.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038725 205 NIKTLRMVHGIINAVAWGVLLPIGAVTARYLR 236 (244)
Q Consensus 205 ~~~~~~~~HG~Lm~vaWgvLlPiG~i~ARYlk 236 (244)
+.+.++++||+||+++|++|+|+|+++|||++
T Consensus 31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~ 62 (191)
T cd08760 31 SSDTLIKAHGVLMAIAWGILMPIGALLARYFL 62 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999973
No 7
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.002 Score=61.88 Aligned_cols=73 Identities=15% Similarity=0.295 Sum_probs=54.9
Q ss_pred cccCcccccCC-CCcEEEEEEecCCceEEEEEEEecCCCCceEEEEECCCCCCCCCCcEEEEEecCCCCeeEEEEEeecC
Q 038725 29 KTFQKCMTLPT-QQASLAWTFHAHNATLDLCFFGTFISPSGWVGWGINPSSPEMTGTRALVAFPDPNSGQLVLLPYILDP 107 (244)
Q Consensus 29 ~~~~~C~~l~~-~~~~L~wt~~~~~~tl~~a~sa~~~~~~GWVa~G~n~~g~~M~Gs~a~Va~~~~~~G~~~v~~y~l~g 107 (244)
..|..-..+-. ....|-|..+-....|.|.+.-. +.+||++|||+.|. |.++|+++.|.+ .+...++++|-+-
T Consensus 31 s~~~~h~~~~~e~~~~lsW~vdy~~q~i~F~l~~~---t~~~v~fGfSdrG~-lanaDivv~~n~--g~~~~~~DayTn~ 104 (603)
T KOG3568|consen 31 STYPHHTLLDSEGKYWLSWSVDYRGQQIAFRLQVR---TAGYVGFGFSDRGA-LANADIVVGGNA--GGRPYLQDAYTNA 104 (603)
T ss_pred CCccceeeecCCCcEEEEEeeccccceeEEEEEec---cCCEEEEecCCcCC-cccCcEEEEecc--CCchhhhhhhcCC
Confidence 44445555443 44459999887777888888763 78999999999998 999999999975 3446777877655
No 8
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=96.67 E-value=0.0025 Score=49.71 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=26.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038725 204 SNIKTLRMVHGIINAVAWGVLLPIGAVTARY 234 (244)
Q Consensus 204 ~~~~~~~~~HG~Lm~vaWgvLlPiG~i~ARY 234 (244)
++.+....+|+++|.++|++++|+|+++.+-
T Consensus 12 ~~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~ 42 (105)
T PF10348_consen 12 SPHRSALYAHIVLMTLAWVILYPIGLVLGNA 42 (105)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456788999999999999999999998653
No 9
>PLN02351 cytochromes b561 family protein
Probab=84.77 E-value=0.72 Score=41.13 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=26.8
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038725 209 LR-MVHGIINAVAWGVLLPIGAVTARYLRH 237 (244)
Q Consensus 209 ~~-~~HG~Lm~vaWgvLlPiG~i~ARYlk~ 237 (244)
.. |+|-+||.+|+.+|++-++++.|++|.
T Consensus 49 iffn~HP~lMviGfi~L~geAILvYR~~~~ 78 (242)
T PLN02351 49 VYAVLHPLLMVIGFILISGEAILVHRWLPG 78 (242)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45 799999999999999999999999983
No 10
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=49.48 E-value=11 Score=32.14 Aligned_cols=29 Identities=17% Similarity=-0.015 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038725 208 TLRMVHGIINAVAWGVLLPIGAVTARYLR 236 (244)
Q Consensus 208 ~~~~~HG~Lm~vaWgvLlPiG~i~ARYlk 236 (244)
+..|+|-+||.+|+.+|+-.++++-|-.+
T Consensus 33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~ 61 (179)
T cd08762 33 KNFNWHPVLMVTGMVVLYGNAALVYRIPL 61 (179)
T ss_pred CceeehHHHHHHHHHHHHHHHHHhhcccc
Confidence 37899999999999999766666666444
No 11
>PLN02810 carbon-monoxide oxygenase
Probab=40.54 E-value=19 Score=31.97 Aligned_cols=31 Identities=6% Similarity=0.043 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038725 207 KTLRMVHGIINAVAWGVLLPIGAVTARYLRH 237 (244)
Q Consensus 207 ~~~~~~HG~Lm~vaWgvLlPiG~i~ARYlk~ 237 (244)
+...|+|-+||.+|+.+|.--++++-|-+|.
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~ 74 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL 74 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhcccc
Confidence 3478999999999999999999999887663
No 12
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=34.33 E-value=50 Score=26.22 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 038725 212 VHGIINAVAWGVLLPIGAVTARYL 235 (244)
Q Consensus 212 ~HG~Lm~vaWgvLlPiG~i~ARYl 235 (244)
+--++|.++|.++-|||..+.=|+
T Consensus 10 a~Ia~mVlGFi~fWPlGla~Lay~ 33 (115)
T PF11014_consen 10 AWIAAMVLGFIVFWPLGLALLAYM 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445799999999999998887665
No 13
>PLN02680 carbon-monoxide oxygenase
Probab=27.17 E-value=31 Score=30.62 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038725 208 TLRMVHGIINAVAWGVLLPIGAVTARYLR 236 (244)
Q Consensus 208 ~~~~~HG~Lm~vaWgvLlPiG~i~ARYlk 236 (244)
.+.++|-+||.+|+.+|+--++++-|-.|
T Consensus 45 ~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~ 73 (232)
T PLN02680 45 LIFNVHPVLMVIGLVLLNGEAMLAYKTVP 73 (232)
T ss_pred ceEechHHHHHHHHHHHHHHHHhcccccc
Confidence 45577777777777777766666655433
No 14
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=26.79 E-value=18 Score=32.30 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038725 207 KTLRMVHGIINAVAWGVLLPIGAVTARYLR 236 (244)
Q Consensus 207 ~~~~~~HG~Lm~vaWgvLlPiG~i~ARYlk 236 (244)
.+.+|+|.+||.+|+..|-=-.+++-|-+|
T Consensus 52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r 81 (245)
T KOG1619|consen 52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFR 81 (245)
T ss_pred chhcCcchHHHHHHHHHhccceeeeeehhh
Confidence 467788888888888887777777766655
No 15
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=23.16 E-value=93 Score=22.00 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 038725 220 AWGVLLPIGAVTARYLRHI 238 (244)
Q Consensus 220 aWgvLlPiG~i~ARYlk~~ 238 (244)
.=.+++|+|-+..||++.+
T Consensus 13 ~AlI~~pLGyl~~~~~~r~ 31 (62)
T PF11120_consen 13 CALIFFPLGYLARRWLPRI 31 (62)
T ss_pred HHHHHHhHHHHHHHHhHHH
Confidence 3368999999999999865
No 16
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S5 is one of the proteins from the small ribosomal subunit, and is a protein of 166 to 254 amino-acid residues. In Escherichia coli, S5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in S5 have been shown to increase translational error frequencies. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial, cyanelle, red algal chloroplast, archaeal and fungal mitochondrial S5; mammalian, Caenorhabditis elegans, Drosophila and plant S2; and yeast S4 (SUP44). This entry represents the N-terminal domain of ribosomal protein S5, which has an alpha-beta(3)-alpha structure that folds into two layers, alpha/beta.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_e 2XZN_E 2XZM_E 3O30_B 1S1H_E 3IZB_E 3U5C_C 3U5G_C 3O2Z_B 3BBN_E ....
Probab=23.05 E-value=1.1e+02 Score=21.82 Aligned_cols=15 Identities=40% Similarity=0.893 Sum_probs=11.8
Q ss_pred EEEEEecCCCCceEEEEE
Q 038725 57 LCFFGTFISPSGWVGWGI 74 (244)
Q Consensus 57 ~a~sa~~~~~~GWVa~G~ 74 (244)
+.+-+ +..||||+|+
T Consensus 27 lvvvG---n~~G~vG~G~ 41 (67)
T PF00333_consen 27 LVVVG---NGNGLVGFGV 41 (67)
T ss_dssp EEEEE---CSSSEEEEEE
T ss_pred EEEEe---cCCCcEecCc
Confidence 34455 7899999999
No 17
>PF14558 TRP_N: ML-like domain
Probab=22.92 E-value=1.3e+02 Score=24.19 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=27.3
Q ss_pred cccCcccccCCCCcEEE-EEEecCCceEEEEEEEe
Q 038725 29 KTFQKCMTLPTQQASLA-WTFHAHNATLDLCFFGT 62 (244)
Q Consensus 29 ~~~~~C~~l~~~~~~L~-wt~~~~~~tl~~a~sa~ 62 (244)
..|..|.+-.......+ -+|++++++|.|.+.|.
T Consensus 5 ~~f~~Cl~~s~~~~~~Fdv~~~~~n~tl~~~v~G~ 39 (141)
T PF14558_consen 5 SSFSNCLDNSYFTASRFDVTYDPDNRTLVFDVYGN 39 (141)
T ss_pred CChhHcCCccccceEEEeEEEcCCCCEEEEEEEEE
Confidence 56889998877666644 48999999999999995
No 18
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=21.45 E-value=93 Score=25.74 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=25.1
Q ss_pred EEEecCCceEEEEEEEecCCCCceEEEEECCCC
Q 038725 46 WTFHAHNATLDLCFFGTFISPSGWVGWGINPSS 78 (244)
Q Consensus 46 wt~~~~~~tl~~a~sa~~~~~~GWVa~G~n~~g 78 (244)
+.|-.+++.|.|-|+...|+=.|| |-|+||+.
T Consensus 18 YAYi~~nG~L~IDiS~nNPnyPGy-G~GlSp~S 49 (146)
T PF06510_consen 18 YAYINDNGKLVIDISPNNPNYPGY-GDGLSPNS 49 (146)
T ss_pred eEEEecCCeEEEEecCCCCCCCCc-ccccCCCc
Confidence 345567899999999987776777 77888765
Done!