Query 038725
Match_columns 244
No_of_seqs 126 out of 288
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7b_A Cellobiose dehydrogenas 99.3 1.7E-10 5.8E-15 97.3 16.9 131 39-198 22-177 (186)
2 2nr1_A NR1 M2, M2; receptor, s 40.4 25 0.00087 19.8 2.6 16 214-229 10-25 (27)
3 3s8f_C Cytochrome C oxidase po 21.2 84 0.0029 18.7 2.8 21 211-233 13-33 (34)
4 1ufi_A CENP-B, major centromer 12.8 89 0.003 20.6 1.5 19 221-239 9-27 (64)
5 1hgv_A PH75 inovirus major coa 10.5 2.9E+02 0.01 16.9 3.2 31 208-238 11-43 (46)
6 2icn_B Prolactin-inducible pro 7.0 4.3E+02 0.015 19.7 3.7 36 28-65 55-90 (118)
7 1efp_A ETF, protein (electron 6.8 1.4E+02 0.005 25.9 1.0 27 66-92 249-278 (307)
8 1efv_A Electron transfer flavo 6.5 1.5E+02 0.0052 25.9 1.0 42 66-107 254-299 (315)
9 4ev6_A Magnesium transport pro 5.8 3.5E+02 0.012 23.3 3.0 20 221-240 319-338 (339)
10 3n00_B N-COR1, N-COR, nuclear 5.7 2.5E+02 0.0085 14.8 1.2 11 226-236 11-21 (21)
No 1
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*
Probab=99.28 E-value=1.7e-10 Score=97.33 Aligned_cols=131 Identities=13% Similarity=0.145 Sum_probs=90.3
Q ss_pred CCCcEEEEEEecCC------ceEEEEEEEecCCCCceEEEEECCCCCCCCCCcEEEEEecCCCCeeEEEEEeecCccccc
Q 038725 39 TQQASLAWTFHAHN------ATLDLCFFGTFISPSGWVGWGINPSSPEMTGTRALVAFPDPNSGQLVLLPYILDPTVKLQ 112 (244)
Q Consensus 39 ~~~~~L~wt~~~~~------~tl~~a~sa~~~~~~GWVa~G~n~~g~~M~Gs~a~Va~~~~~~G~~~v~~y~l~g~~~~~ 112 (244)
..+..+-|.+..+. ..+.+.++++ .+.||||+|+ |++|.|++++|+|.+ + |++++..|+.+| |
T Consensus 22 ~~~~~f~~alP~~~~s~~~s~d~~~qi~~p--~~~gW~g~g~---Gg~M~gs~l~v~w~~-~-~~v~~S~R~a~g----~ 90 (186)
T 1d7b_A 22 VHDVTYGFVFPPLATSGAQSTEFIGEVVAP--IASKWIGIAL---GGAMNNDLLLVAWAN-G-NQIVSSTRWATG----Y 90 (186)
T ss_dssp TTTEEEEEEBCCCCSSSCCCCCEEEEEEEE--TTCCEEEEET---TSSSSSSCEEEEEEE-T-TEEEEEEEECSS----S
T ss_pred CCCEEEEEECCCcccCCCCCccEEEEEEcc--CCCCEEEEec---CCCCCCCcEEEEEeC-C-CEEEEEEEEecC----c
Confidence 33444566654322 3477778775 5789999999 778999999999998 5 899999999999 7
Q ss_pred cCCC-CCCCcceeeccCcccccCCceeEEEcCCEEEEEEEEeeC------C------CCCceeEEEeeccccC------C
Q 038725 113 KSPL-LSRPLDINLISSSATLYGGKMATIHNGASVQIFATLKLS------P------NKTKIHHVWNRGLYVQ------G 173 (244)
Q Consensus 113 ~~~~-~~~~l~~~v~~~~~~~~~g~~s~~~~~~~~~if~t~~l~------~------~~~~~~~Iwa~G~~~~------~ 173 (244)
..|. ..+..+++++.. +. ++++.++ ++++++ . ..+. .+|||.+...+ +
T Consensus 91 ~~P~~y~~~~~~~lL~g---------s~-vn~t~~~--~~f~C~~C~~w~~~g~~~~ts~~-~~iwA~~~~~p~~~~~~~ 157 (186)
T 1d7b_A 91 VQPTAYTGTATLTTLPE---------TT-INSTHWK--WVFRCQGCTEWNNGGGIDVTSQG-VLAWAFSNVAVDDPSDPQ 157 (186)
T ss_dssp SCCEECCSSCEEEECTT---------CE-ECSSEEE--EEEEEETTTBCTTSCBCCTTSEE-EEEEEEESSCCSCTTCTT
T ss_pred cCCCccCCCceEEEccc---------cc-EeCCEEE--EEEEeCCCcccCCCCccccCCCC-eEEEEECCCCCCCCCCCc
Confidence 6554 566677777765 32 2445433 344432 1 1223 79999875432 3
Q ss_pred CCCccCCCCCCCCcceEEEEeecCc
Q 038725 174 YSPTIHPTTSNDLSSIATIDVMSGS 198 (244)
Q Consensus 174 ~~~~~H~~~~~n~~s~~~ldl~sG~ 198 (244)
..+.+|+ ..+.+.+||....
T Consensus 158 a~~~~H~-----~~G~~~~dL~~a~ 177 (186)
T 1d7b_A 158 STFSEHT-----DFGFFGIDYSTAH 177 (186)
T ss_dssp CCCCCCS-----EEEEEEEEGGGCB
T ss_pred ccchhhh-----CcceEEEEccccc
Confidence 4678887 4778999999654
No 2
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=40.45 E-value=25 Score=19.84 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 038725 214 GIINAVAWGVLLPIGA 229 (244)
Q Consensus 214 G~Lm~vaWgvLlPiG~ 229 (244)
..-|-++||+|+-+|+
T Consensus 10 ~aa~wF~WGvllnsgi 25 (27)
T 2nr1_A 10 SSAMWFSWGVLLNSGI 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhheeccc
Confidence 6678899999998886
No 3
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=21.17 E-value=84 Score=18.66 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038725 211 MVHGIINAVAWGVLLPIGAVTAR 233 (244)
Q Consensus 211 ~~HG~Lm~vaWgvLlPiG~i~AR 233 (244)
-.=|+.+.+.|...+ +.++.|
T Consensus 13 ~ilg~~I~i~W~~vf--~lFl~R 33 (34)
T 3s8f_C 13 LVLTLTILVFWLGVY--AVFFAR 33 (34)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHH--eeeecC
Confidence 445889999998776 666666
No 4
>1ufi_A CENP-B, major centromere autoantigen B; dimerization domain, salt bridge, riken structural genomics/proteomics initiative, RSGI; 1.65A {Homo sapiens} SCOP: a.30.4.1
Probab=12.80 E-value=89 Score=20.64 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 038725 221 WGVLLPIGAVTARYLRHIQ 239 (244)
Q Consensus 221 WgvLlPiG~i~ARYlk~~~ 239 (244)
||--|---+|+-|||-.|.
T Consensus 9 fgeamayfamvkryltsfp 27 (64)
T 1ufi_A 9 FGEAMAYFAMVKRYLTSFP 27 (64)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 5666677899999999885
No 5
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=10.48 E-value=2.9e+02 Score=16.93 Aligned_cols=31 Identities=32% Similarity=0.449 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHH-Hhhccc
Q 038725 208 TLRMVHGIINAVAWGVL-LPIGAVTA-RYLRHI 238 (244)
Q Consensus 208 ~~~~~HG~Lm~vaWgvL-lPiG~i~A-RYlk~~ 238 (244)
...+.-|.+.+.+-|+| +.||.-.| ||.|.|
T Consensus 11 ~v~~yi~~iaaagvgvlal~iglsaaw~ya~rf 43 (46)
T 1hgv_A 11 QVTNYIQAIAAAGVGVLALAIGLSAAWKYAKRF 43 (46)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccchHHHHHHhHHHHHHHHHHH
Confidence 34455577777777766 55665444 788776
No 6
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B*
Probab=6.98 E-value=4.3e+02 Score=19.68 Aligned_cols=36 Identities=14% Similarity=0.385 Sum_probs=25.1
Q ss_pred CcccCcccccCCCCcEEEEEEecCCceEEEEEEEecCC
Q 038725 28 TKTFQKCMTLPTQQASLAWTFHAHNATLDLCFFGTFIS 65 (244)
Q Consensus 28 ~~~~~~C~~l~~~~~~L~wt~~~~~~tl~~a~sa~~~~ 65 (244)
+..|+.|.--.. -.+++|.+.+.. ++.|.++++...
T Consensus 55 ~~~~s~ClC~~~-~ktf~W~v~~~~-~Vnitv~ae~~~ 90 (118)
T 2icn_B 55 NYKYTACLCDDN-PKTFYWDFYTNR-TVQIAAVVDVIR 90 (118)
T ss_dssp GCEEEEEECSSS-CEEEEEEECCSS-CEEEEEEEEECC
T ss_pred CCcCCEEECCCC-CEEEEEEEEECc-EEEEEEEEEEEc
Confidence 445777876432 355799999875 888888886443
No 7
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=6.75 E-value=1.4e+02 Score=25.94 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=20.4
Q ss_pred CCceEEEEECCC---CCCCCCCcEEEEEec
Q 038725 66 PSGWVGWGINPS---SPEMTGTRALVAFPD 92 (244)
Q Consensus 66 ~~GWVa~G~n~~---g~~M~Gs~a~Va~~~ 92 (244)
+.=|||.|||-- =.+|-+|+.+|+.-.
T Consensus 249 P~lYiA~GISGAiQHlaGm~~s~~IVAIN~ 278 (307)
T 1efp_A 249 PELYVAVGISGAIQHLAGMKDSKVIVAINK 278 (307)
T ss_dssp CSEEEEESCCCCHHHHTTTTTCSEEEEEES
T ss_pred CceEEEEeccCcHHHHhhhccCCEEEEEeC
Confidence 445899999842 245999999999854
No 8
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=6.51 E-value=1.5e+02 Score=25.91 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=26.2
Q ss_pred CCceEEEEECCC---CCCCCCCcEEEEEecCCCC-eeEEEEEeecC
Q 038725 66 PSGWVGWGINPS---SPEMTGTRALVAFPDPNSG-QLVLLPYILDP 107 (244)
Q Consensus 66 ~~GWVa~G~n~~---g~~M~Gs~a~Va~~~~~~G-~~~v~~y~l~g 107 (244)
+.=|||.|||-- =.+|-+|+.+|+.-...+- =..+-+|-+-|
T Consensus 254 P~lYiA~GISGAiQHlaGm~~s~~IVAIN~D~~ApIf~~ADygiVg 299 (315)
T 1efv_A 254 PELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVA 299 (315)
T ss_dssp CSEEEEESCCCCHHHHTTTTTCSEEEEEESCTTCGGGGTCSEEEES
T ss_pred cceEEEecccCcHHHHhhcccCCEEEEEeCCCCCCcchhcCeEEee
Confidence 445899999842 2459999999998541211 13444555555
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=5.77 E-value=3.5e+02 Score=23.30 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 038725 221 WGVLLPIGAVTARYLRHIQA 240 (244)
Q Consensus 221 WgvLlPiG~i~ARYlk~~~~ 240 (244)
|++.+-+++++..|||..+|
T Consensus 319 l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 319 MALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 44444455555566665554
No 10
>3n00_B N-COR1, N-COR, nuclear receptor corepressor 1; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=5.73 E-value=2.5e+02 Score=14.78 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=8.8
Q ss_pred HHHHHHHHhhc.....
Q 038725 226 PIGAVTARYLR..... 236 (244)
Q Consensus 226 PiG~i~ARYlk..... 236 (244)
+.-+|.+||-|
T Consensus 11 i~eVitqd~~r..... 21 (21)
T 3n00_B 11 ICQIITQDFARxxxxx 26 (26)
T ss_pred HHHHHHHHhcC.....
Confidence 77888888865
Done!