Query 038725
Match_columns 244
No_of_seqs 126 out of 288
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 03:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038725.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038725hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pl3a_ b.1.9.1 (A:) Cytochrom 99.3 1.5E-11 1.1E-15 101.7 14.5 118 54-199 43-178 (186)
2 d3cx5d2 f.23.11.1 (D:261-307) 27.7 16 0.0012 21.9 2.0 26 216-241 8-33 (47)
3 d1ufia_ a.30.4.1 (A:) Dimerisa 17.7 33 0.0024 19.9 1.9 19 221-239 7-25 (48)
4 d1pkpa2 d.50.1.2 (A:4-77) Ribo 17.4 48 0.0035 21.4 3.0 15 57-74 33-47 (74)
5 d2uube2 d.50.1.2 (E:5-73) Ribo 15.2 60 0.0044 20.6 3.0 15 57-74 27-41 (69)
6 d2qale2 d.50.1.2 (E:9-77) Ribo 13.3 40 0.0029 21.5 1.7 15 57-74 27-41 (69)
7 d1ppjd2 f.23.11.1 (D:196-241) 10.9 68 0.005 18.7 2.0 26 216-241 8-33 (46)
8 d1q79a1 a.160.1.1 (A:215-364) 7.0 40 0.0029 24.8 -0.4 28 211-238 25-62 (150)
9 d1k8ib2 d.19.1.1 (B:1-94) Clas 7.0 52 0.0038 22.3 0.3 18 221-238 47-64 (94)
10 d1olma2 b.132.1.1 (A:275-393) 6.7 1.8E+02 0.013 19.6 3.3 19 39-57 24-42 (119)
No 1
>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Probab=99.32 E-value=1.5e-11 Score=101.70 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=82.2
Q ss_pred eEEEEEEEecCCCCceEEEEECCCCCCCCCCcEEEEEecCCCCeeEEEEEeecCccccccCCC-CCCCcceeeccCcccc
Q 038725 54 TLDLCFFGTFISPSGWVGWGINPSSPEMTGTRALVAFPDPNSGQLVLLPYILDPTVKLQKSPL-LSRPLDINLISSSATL 132 (244)
Q Consensus 54 tl~~a~sa~~~~~~GWVa~G~n~~g~~M~Gs~a~Va~~~~~~G~~~v~~y~l~g~~~~~~~~~-~~~~l~~~v~~~~~~~ 132 (244)
.+-+.+++ |.+.||||+|+ |.+|.|++++|+|.+ +|++++++|+.+| |.+|. .++..++.++..
T Consensus 43 d~i~qi~a--p~~~GWvgiG~---gg~M~gs~l~V~w~~--~~~v~~S~R~atG----~~~P~~~~~~~~~~~l~~---- 107 (186)
T d1pl3a_ 43 EFIGEVVA--PIASKWIGIAL---GGAHNNDLLLVAWAN--GNQIVSSTRWATG----YVQPTAYTGTATLTTLPE---- 107 (186)
T ss_dssp CEEEEEEE--ETTCCEEEEET---TSSSSSSCEEEEEEE--TTEEEEEEEECST----TSCCEECCSSCEEEECTT----
T ss_pred CEEEEEeC--CCCCcEEEEEc---CCCCCCCcEEEEEec--CCeEEEEEEEecc----eeCCcccCCCceEEEccC----
Confidence 44455555 57899999999 677999999999997 4899999999999 76543 455555555544
Q ss_pred cCCceeEEEcCCEEEEEEEEeeC------C-----CCCceeEEEeecccc------CCCCCccCCCCCCCCcceEEEEee
Q 038725 133 YGGKMATIHNGASVQIFATLKLS------P-----NKTKIHHVWNRGLYV------QGYSPTIHPTTSNDLSSIATIDVM 195 (244)
Q Consensus 133 ~~g~~s~~~~~~~~~if~t~~l~------~-----~~~~~~~Iwa~G~~~------~~~~~~~H~~~~~n~~s~~~ldl~ 195 (244)
+. ++++.+++ ++++. . ......+|||.|+.. ++..+.+|+ ..+.+.+||.
T Consensus 108 -----s~-vn~t~~~~--~f~C~~C~~w~~~~~~~~~~~~~~iwA~~~~~p~~~~~~~~~i~~H~-----~~G~f~~dl~ 174 (186)
T d1pl3a_ 108 -----TT-INSTHWKW--VFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHT-----DFGFFGIDYS 174 (186)
T ss_dssp -----CE-ECSSEEEE--EEEEETCSBCTTSCBCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCS-----EEEEEEEEGG
T ss_pred -----ce-EECCEEEE--EEEEeccccccCCCcccCCCceEEEEEECCCCCCCCCCCccCcceec-----CCceEEEEcc
Confidence 22 34554443 33321 1 235568999999643 245788886 5778999998
Q ss_pred cCcc
Q 038725 196 SGST 199 (244)
Q Consensus 196 sG~~ 199 (244)
.+.+
T Consensus 175 ~a~~ 178 (186)
T d1pl3a_ 175 TAHS 178 (186)
T ss_dssp GCBC
T ss_pred cCcc
Confidence 7653
No 2
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.68 E-value=16 Score=21.91 Aligned_cols=26 Identities=4% Similarity=-0.027 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Q 038725 216 INAVAWGVLLPIGAVTARYLRHIQAL 241 (244)
Q Consensus 216 Lm~vaWgvLlPiG~i~ARYlk~~~~~ 241 (244)
.|.+=|.+++.+=..++=|.|.|+|+
T Consensus 8 ~mg~K~~~i~s~l~~~~~y~KR~kWs 33 (47)
T d3cx5d2 8 RLGLKTVIILSSLYLLSIWVKKFKWA 33 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 36667777778888888899988875
No 3
>d1ufia_ a.30.4.1 (A:) Dimerisation domain of CENP-B {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.65 E-value=33 Score=19.85 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 038725 221 WGVLLPIGAVTARYLRHIQ 239 (244)
Q Consensus 221 WgvLlPiG~i~ARYlk~~~ 239 (244)
||--|---+|+-|||..|.
T Consensus 7 fgeamayfamvkryltsfp 25 (48)
T d1ufia_ 7 FGEAMAYFAMVKRYLTSFP 25 (48)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 5566677899999999884
No 4
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.45 E-value=48 Score=21.40 Aligned_cols=15 Identities=40% Similarity=0.822 Sum_probs=12.0
Q ss_pred EEEEEecCCCCceEEEEE
Q 038725 57 LCFFGTFISPSGWVGWGI 74 (244)
Q Consensus 57 ~a~sa~~~~~~GWVa~G~ 74 (244)
+.+-+ +..||||+|+
T Consensus 33 ~VvvG---n~~G~vG~G~ 47 (74)
T d1pkpa2 33 LVVVG---DKNGHVGFGT 47 (74)
T ss_dssp EEEEE---CSSSEEEEEE
T ss_pred EEEee---CCCCcEEEEE
Confidence 45556 7899999999
No 5
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=15.18 E-value=60 Score=20.60 Aligned_cols=15 Identities=40% Similarity=0.723 Sum_probs=11.7
Q ss_pred EEEEEecCCCCceEEEEE
Q 038725 57 LCFFGTFISPSGWVGWGI 74 (244)
Q Consensus 57 ~a~sa~~~~~~GWVa~G~ 74 (244)
+.+.+ +..||||+|+
T Consensus 27 lvvvG---n~~G~vG~G~ 41 (69)
T d2uube2 27 LVVVG---DRQGRVGLGF 41 (69)
T ss_dssp EEEEE---CSSSEEEEEE
T ss_pred EEEEE---CCCCcEeecc
Confidence 34445 7899999999
No 6
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.33 E-value=40 Score=21.51 Aligned_cols=15 Identities=40% Similarity=0.769 Sum_probs=12.2
Q ss_pred EEEEEecCCCCceEEEEE
Q 038725 57 LCFFGTFISPSGWVGWGI 74 (244)
Q Consensus 57 ~a~sa~~~~~~GWVa~G~ 74 (244)
+.+.+ +..||||+|+
T Consensus 27 lVvvG---n~~G~vG~G~ 41 (69)
T d2qale2 27 LTVVG---DGNGRVGFGY 41 (69)
T ss_dssp EEEEE---CSSSBCCEEE
T ss_pred EEEee---CCCCcEeEee
Confidence 45566 7899999999
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.85 E-value=68 Score=18.74 Aligned_cols=26 Identities=0% Similarity=-0.156 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Q 038725 216 INAVAWGVLLPIGAVTARYLRHIQAL 241 (244)
Q Consensus 216 Lm~vaWgvLlPiG~i~ARYlk~~~~~ 241 (244)
.|.+-+.+++.+=+.++-|.|.+.|+
T Consensus 8 ~mG~Kv~~~l~~l~~l~yy~KR~~Ws 33 (46)
T d1ppjd2 8 RMGLKMLLMMGLLLPLVYAMKRHKWS 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36677777888888888888888775
No 8
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.99 E-value=40 Score=24.82 Aligned_cols=28 Identities=14% Similarity=0.502 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHhhccc
Q 038725 211 MVHGIINAVAWGVLL----------PIGAVTARYLRHI 238 (244)
Q Consensus 211 ~~HG~Lm~vaWgvLl----------PiG~i~ARYlk~~ 238 (244)
+..|-|..|+|.+|. +...++-++|+.|
T Consensus 25 n~~GflGGI~waILvArvCql~Pna~~~~ll~~FF~~y 62 (150)
T d1q79a1 25 NILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVF 62 (150)
T ss_dssp TTTTSBCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456778888887764 3455666677655
No 9
>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=6.95 E-value=52 Score=22.28 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhccc
Q 038725 221 WGVLLPIGAVTARYLRHI 238 (244)
Q Consensus 221 WgvLlPiG~i~ARYlk~~ 238 (244)
||+|-|+...+|.||-..
T Consensus 47 ~g~L~~~A~~is~~LN~~ 64 (94)
T d1k8ib2 47 FGVLSRLAEIISNILNEQ 64 (94)
T ss_dssp CSTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 778888888888887643
No 10
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.72 E-value=1.8e+02 Score=19.61 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=9.0
Q ss_pred CCCcEEEEEEecCCceEEE
Q 038725 39 TQQASLAWTFHAHNATLDL 57 (244)
Q Consensus 39 ~~~~~L~wt~~~~~~tl~~ 57 (244)
..|+.|.|.+...+..|.|
T Consensus 24 ~~Gs~l~WeF~t~~~DI~F 42 (119)
T d1olma2 24 FPGCVLRWQFMSDGADVGF 42 (119)
T ss_dssp STTCEEEEEEEESSSCEEE
T ss_pred CCCcEEEEEEEeCCccEEE
Confidence 3455555555544443333
Done!