BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038727
(565 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
Ananatis
Length = 501
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 112/517 (21%), Positives = 189/517 (36%), Gaps = 86/517 (16%)
Query: 25 VIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSV 84
VIG G GL A L G+ V +LE+R GG A E GF F + + PS
Sbjct: 6 VIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYE-DQGFTFDAGPTV--ITDPSA 62
Query: 85 IRXXXXXX----XXXXXXXPIATSFTPCXXXXXXXXXXXXQQN-NSEISKFSKRDADTYP 139
I P+ + C Q ++I +F+ RD + Y
Sbjct: 63 IEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYR 122
Query: 140 RYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLRD--KMQKSVFWARCLRHVLSLGQK 197
++ + K L + P LSF D+LR ++ K W V S
Sbjct: 123 QFLDYSRAVFKEGYLKLGTVP------FLSFRDMLRAAPQLAKLQAWRSVYSKVAS---- 172
Query: 198 DLVDFMDILLSPTTKILNKWFESDVLKATVAADAITGSMASIHAPGSGYVLLHHVMGETD 257
+ E + L+ + ++ + A S Y L+H + +
Sbjct: 173 -------------------YIEDEHLRQAFSFHSLLVG-GNPFATSSIYTLIHAL----E 208
Query: 258 GDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVH 317
+ +W GG G++ + K G +++N VS M +++ V L DG R
Sbjct: 209 REWGVW-FPRGGTGALVQGMIKLFQDLGGEVVLNARVSH-METTGNKIEAVHLEDGRRFL 266
Query: 318 SSFVLSNATPYKTFMGLV---PRDVLPDDFLRAIKYSD-YHSGVTKINVAVDKLPQFHCC 373
+ V SNA T+ L+ P V + L+ + S+ +N D+L C
Sbjct: 267 TQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHHTVC 326
Query: 374 KSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEMTIPSSLDKTISPPGK 433
GP + E ++EI + +GL + + + P D +++P G
Sbjct: 327 ------FGPRYR-------ELIDEIFNH-----DGL-AEDFSLYLHAPCVTDSSLAPEGC 367
Query: 434 HVVSLFTQYTPYKPSDGSW--EDPTYRESYAQKCFSLIDE-YAPGFSSSVIGYDLLTPPD 490
+ ++ W E P R+ + F+ +++ Y PG S ++ + + TP D
Sbjct: 368 GSYYVLAPVPHLGTANLDWTVEGPKLRD----RIFAYLEQHYMPGLRSQLVTHRMFTPFD 423
Query: 491 LEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTP 527
+ N +HG S F + PV S + P
Sbjct: 424 FRDQL-----NAYHG-----SAFSVEPVLTQSAWFRP 450
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 10 VSLTRTLKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGG 57
++ T KD WD +VIGGG+ GL A L G +LE R IGG
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 10 VSLTRTLKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGG 57
++ T KD WD +VIGGG+ GL A L G +LE R IGG
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 10 VSLTRTLKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGG 57
++ T KD WD +VIGGG+ GL A L G +LE R IGG
Sbjct: 29 TNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEEL 64
D +++G G +GL AA L + GLSVAVLE R +GG T+ +
Sbjct: 9 DVVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTI 51
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
+D +VIGGG +GL AA L G+SV VLE R +GG T
Sbjct: 3 FDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYT 43
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
+D +VIGGG +GL AA L G+SV VLE R +GG T
Sbjct: 14 FDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYT 54
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLE 50
WD +V+GGG +GL AA +LAR GL V VL+
Sbjct: 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLD 31
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
+D +VIGGG +GL AA L G+SV VLE R +GG T
Sbjct: 3 FDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYT 43
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEEL 64
D ++G G +GL AA L + GLSVAV+E R +GG T+ +
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI 49
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEEL 64
D ++G G +GL AA L + GLSVAV+E R +GG T+ +
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI 49
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEEL 64
D ++G G +GL AA L + GLSVAV+E R +GG T+ +
Sbjct: 7 DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI 49
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEEL 64
D ++G G +GL AA L + GLSVAV+E R +GG T+ +
Sbjct: 7 DVAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI 49
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEEL--IPGF 68
+D ++IGGG GL AA Y R LS +LE+ G A +EE+ PGF
Sbjct: 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGF 58
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 18 DKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYL 76
+K D ++IGGG G +AA A+ G + A +E+R +GG + IP S+L
Sbjct: 3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHL 61
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 16 LKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52
+ D + D LV+G G GL A +LAR G+ V V+ERR
Sbjct: 1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERR 37
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
+D +VIGGG +GL AA L+ ++V VLE R +GG T
Sbjct: 22 FDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYT 62
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound
6-Hydroxy-L-Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine
Oxidase With Substrate Bound At Active Site And
Inhibitor At Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Intermediate Methylmyosmine Product Formed During
Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final
Ketone Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product
Bound At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit
Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Nicotinamide
Length = 431
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEEL--IPGFK 69
+DA+V+GGG +GL AA L G V +LE +GG A + E +PG +
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLR 52
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEEL--IPGFK 69
+DA+V+GGG +GL AA L G V +LE +GG A + E +PG +
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLR 52
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 19 KKWDALVIGGGHNGLIAAAYLAR--GGLSVAVLERRHVIGG 57
K +DA+++GGG +GL A +LA+ G +VAVLE+ + GG
Sbjct: 20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGG 60
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQS 78
+++DA+ IGGG G +AYL G +++R +GG+ +P FS C+
Sbjct: 42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELM 101
Query: 79 LLR 81
L R
Sbjct: 102 LAR 104
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 17 KDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAA 59
+ K +D L++G G G + A LA G V +++RR IGG A
Sbjct: 26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNA 68
>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 19 KKWDALVIGGGHNGLIAAAYLAR--GGLSVAVLERRHVIGG 57
K +DA+++GGG +GL A +LA+ G +VAVLE+ + GG
Sbjct: 20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGG 60
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEE 63
+D +++G G G + A L + V V+E+R+ IGG A TE+
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED 44
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGA 58
D +VIGGG +GL A +L R GLS +L+ GGA
Sbjct: 5 DVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGA 41
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP 66
+D LVIG G G +AA A+ G+ V V+E+ +GG + IP
Sbjct: 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIP 47
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Id Mar208
Length = 425
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 24 LVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSY 75
+VIG G GL++AA L++ G V V ER + GG T GF+ S ++
Sbjct: 4 VVIGAGLGGLLSAARLSKAGHEVEVFERLPITGG-RFTNLSYKGFQLSSGAF 54
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 16 LKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52
+K+ K+D L+IGGG G AA L+R GL + +++ +
Sbjct: 2 MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSK 38
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase
From Sinorhizobium Meliloti 1021
Length = 491
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP 66
+D +VIG G G + A A+ G VAV+E+R GG + IP
Sbjct: 26 YDLIVIGSGPGGYVCAIKAAQLGXKVAVVEKRSTYGGTCLNVGCIP 71
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
K ++IG G +GL AA L G+ V +LE R +GG T
Sbjct: 155 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 197
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
K ++IG G +GL AA L G+ V +LE R +GG T
Sbjct: 155 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 197
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
K ++IG G +GL AA L G+ V +LE R +GG T
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 148
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
K ++IG G +GL AA L G+ V +LE R +GG T
Sbjct: 107 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 149
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
K ++IG G +GL AA L G+ V +LE R +GG T
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 148
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
K ++IG G +GL AA L G+ V +LE R +GG T
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 148
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
K ++IG G +GL AA L G+ V +LE R +GG T
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 148
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori
In Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori
In Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGG 57
D +IGGG GL A Y RGG+ AVL + + GG
Sbjct: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 14/59 (23%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLER----RHVIGGAAVTEELIPGFKFSRC 73
+K D LVIG G G +AA+ + + G V ++E+ R VIG E L+P RC
Sbjct: 4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIG-----ESLLP-----RC 52
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
K ++IG G +GL AA L G+ V +LE R +GG T
Sbjct: 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT 319
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP 66
+D LVIGGG GL +A A G AV+E H +GG V +P
Sbjct: 21 YDYLVIGGGSGGLESAWRAAELGARAAVVE-SHKLGGTCVNVGCVP 65
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 8 NGVSLTRTLKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
NG+S T K +++G G +GL AA LA G V VLE GG T
Sbjct: 38 NGLSTTSNPKR----VVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKT 87
>pdb|2FUG|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|4 Chain 4, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|D Chain D, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|M Chain M, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|V Chain V, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|4 Chain 4, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|D Chain D, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|4 Chain 4, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|4 Chain 4, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|E Chain E, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 409
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 469 IDEYAPGFSSSVIGYDL-----LTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSG 523
IDEY F+ S I Y+ + PP++ + GLTGG++ + D +R +SG
Sbjct: 201 IDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYD----VRKAYPYSG 256
Query: 524 YRT 526
Y T
Sbjct: 257 YET 259
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP 66
+D LVIGGG GL +A A G AV+E H +GG V +P
Sbjct: 4 YDYLVIGGGSGGLESAWRAAELGARAAVVE-SHKLGGTCVNVGCVP 48
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 4 RSFSNGVSLTRTLKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLE 50
R+ + L L +A+VIGGG+ GL AAA L + G++V +LE
Sbjct: 136 RTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLE 182
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 2 WRRSFSNGVSLTRTLKDKKWDA--LVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAA 59
WRR + ++ K+ DA LV+G G +GL AA L G V + E +GG
Sbjct: 376 WRRGWH-----PERIRAKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRV 430
Query: 60 VTEELIPGF 68
E +PG
Sbjct: 431 TQESALPGL 439
>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
Length = 641
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGL----------SVAVLERRHVIGGAA---VTEEL 64
+D +V+G GH G AA +ARGGL +VA + IGG A +T E+
Sbjct: 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREI 78
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLER----RHVIGGAAVTEELIPGFKFSRCSYL 76
+D +VIGGG G A+++A G V +LER RH IG E L+P C+ L
Sbjct: 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIG-----ESLLPATVHGICAML 62
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
Length = 476
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLER------RHVIGGAAVTEELIPGFKFSR 72
+K+D +VIG G G +AA A+ GL A++E+ + +GG + IP
Sbjct: 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLD 61
Query: 73 CSY 75
SY
Sbjct: 62 SSY 64
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 15 TLKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLER 51
T+ +D +++G G G+IAA L+ G V +LER
Sbjct: 2 TVSATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLER 38
>pdb|2FJA|A Chain A, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJA|C Chain C, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJB|A Chain A, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJB|C Chain C, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJD|A Chain A, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJD|C Chain C, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJE|A Chain A, Adenosine-5-Phosphosulfate Reductase Oxidized State
pdb|2FJE|C Chain C, Adenosine-5-Phosphosulfate Reductase Oxidized State
Length = 643
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 22 DALVIGGGHNGLIA---AAYLAR-GGLSVAVLERRHVIGGAAVTEEL 64
D L+IGGG +G A AAY A+ GGL V ++E+ V AV + L
Sbjct: 24 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGL 70
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 22 DALVIGGGHNGLIA---AAYLAR-GGLSVAVLERRHVIGGAAVTEEL 64
D L+IGGG +G A AAY A+ GGL V ++E+ V AV + L
Sbjct: 24 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGL 70
>pdb|2W6C|X Chain X, Ache In Complex With A Bis-(-)-Nor-Meptazinol Derivative
pdb|2W9I|A Chain A, Ache In Complex With Methylene Blue
Length = 586
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 411 SRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLID 470
+R PV+ I + L + P + F + P KP G W TY C +D
Sbjct: 39 TRVPVLSSHISAFLGIPFAEPPVGNMR-FRRPEPKKPWSGVWNASTY----PNNCQQYVD 93
Query: 471 EYAPGFSSS 479
E PGFS S
Sbjct: 94 EQFPGFSGS 102
>pdb|2C58|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
20mm Acetylthiocholine
Length = 537
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 411 SRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLID 470
+R PV+ I + L + P + F + P KP G W TY C +D
Sbjct: 18 TRVPVLSSHISAFLGIPFAEPPVGNMR-FRRPEPKKPWSGVWNASTY----PNNCQQYVD 72
Query: 471 EYAPGFSSS 479
E PGFS S
Sbjct: 73 EQFPGFSGS 81
>pdb|2DFP|A Chain A, X-Ray Structure Of Aged Di-Isopropyl-Phosphoro-Fluoridate
(Dfp) Bound To Acetylcholinesterase
Length = 534
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 411 SRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLID 470
+R PV+ I + L + P + F + P KP G W TY C +D
Sbjct: 17 TRVPVLSSHISAFLGIPFAEPPVGNMR-FRRPEPKKPWSGVWNASTY----PNNCQQYVD 71
Query: 471 EYAPGFSSS 479
E PGFS S
Sbjct: 72 EQFPGFSGS 80
>pdb|3GEL|A Chain A, O-Methylphosphorylated Torpedo Acetylcholinesterase
Obtained By Reaction With Methyl Paraoxon (Aged)
Length = 532
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 411 SRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLID 470
+R PV+ I + L + P + F + P KP G W TY C +D
Sbjct: 15 TRVPVLSSHISAFLGIPFAEPPVGNMR-FRRPEPKKPWSGVWNASTY----PNNCQQYVD 69
Query: 471 EYAPGFSSS 479
E PGFS S
Sbjct: 70 EQFPGFSGS 78
>pdb|3I6M|A Chain A, 3d Structure Of Torpedo Californica Acetylcholinesterase
Complexed With N-Piperidinopropyl-Galanthamine
pdb|3I6Z|A Chain A, 3d Structure Of Torpedo Californica Acetylcholinesterase
Complexed With N-Saccharinohexyl-Galanthamine
Length = 534
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 411 SRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLID 470
+R PV+ I + L + P + F + P KP G W TY C +D
Sbjct: 17 TRVPVLSSHISAFLGIPFAEPPVGNMR-FRRPEPKKPWSGVWNASTY----PNNCQQYVD 71
Query: 471 EYAPGFSSS 479
E PGFS S
Sbjct: 72 EQFPGFSGS 80
>pdb|1EEA|A Chain A, Acetylcholinesterase
Length = 534
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 411 SRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLID 470
+R PV+ I + L + P + F + P KP G W TY C +D
Sbjct: 18 TRVPVLSSHISAFLGIPFAEPPVGNMR-FRRPEPKKPWSGVWNASTY----PNNCQQYVD 72
Query: 471 EYAPGFSSS 479
E PGFS S
Sbjct: 73 EQFPGFSGS 81
>pdb|1FSS|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With
Fasciculin-Ii
pdb|1CFJ|A Chain A, Methylphosphonylated Acetylcholinesterase (Aged) Obtained
By Reaction With O-Isopropylmethylphosphonofluoridate
(Gb, Sarin)
pdb|1VXO|A Chain A, Methylphosphonylated Acetylcholinesterase (Aged) Obtained
By Reaction With
O-Ethyl-S-[2-[bis(1-Methylethyl)amino]ethyl]
Methylphosphonothioate (Vx)
pdb|1VXR|A Chain A, O-Ethylmethylphosphonylated Acetylcholinesterase Obtained
By Reaction With
O-Ethyl-S-[2-[bis(1-Methylethyl)amino]ethyl]
Methylphosphonothioate (Vx)
pdb|1QTI|A Chain A, Acetylcholinesterase (E.C.3.1.1.7)
pdb|1QID|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point A) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIE|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point B) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIF|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point C) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIG|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point D) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIH|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point E) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QII|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point F) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIJ|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point G) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIK|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point H) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIM|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point I) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1EA5|A Chain A, Native Acetylcholinesterase (E.C. 3.1.1.7) From Torpedo
Californica At 1.8a Resolution
pdb|1GPK|A Chain A, Structure Of Acetylcholinesterase Complex With
(+)-Huperzine A At 2.1a Resolution
pdb|1GPN|A Chain A, Structure Of Acetylcholinesterase Complexed With Huperzine
B At 2.35a Resolution
pdb|2C4H|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
500mm Acetylthiocholine
pdb|2C5F|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium
pdb|2C5G|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
20mm Thiocholine
pdb|1AMN|A Chain A, Transition State Analog: Acetylcholinesterase Complexed
With M-(N,N,N-Trimethylammonio)trifluoroacetophenone
pdb|1AX9|A Chain A, Acetylcholinesterase Complexed With Edrophonium, Laue Data
pdb|1OCE|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With Mf268
pdb|1VOT|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With
Huperzine A
pdb|2ACE|A Chain A, Native Acetylcholinesterase (E.C. 3.1.1.7) From Torpedo
Californica
pdb|2ACK|A Chain A, Acetylcholinesterase Complexed With Edrophonium,
Monochromatic Data
pdb|2V96|A Chain A, Structure Of The Unphotolysed Complex Of Tcache With 1-(2-
Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine At 100k
pdb|2V96|B Chain B, Structure Of The Unphotolysed Complex Of Tcache With 1-(2-
Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine At 100k
pdb|2V97|A Chain A, Structure Of The Unphotolysed Complex Of Tcache With
1-(2- Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature
pdb|2V97|B Chain B, Structure Of The Unphotolysed Complex Of Tcache With
1-(2- Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature
pdb|2V98|A Chain A, Structure Of The Complex Of Tcache With
1-(2-Nitrophenyl)-2, 2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature, During
The First 5 Seconds Of Which Laser Irradiation At 266nm
Took Place
pdb|2V98|B Chain B, Structure Of The Complex Of Tcache With
1-(2-Nitrophenyl)-2, 2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature, During
The First 5 Seconds Of Which Laser Irradiation At 266nm
Took Place
pdb|2VA9|A Chain A, Structure Of Native Tcache After A 9 Seconds Annealing To
Room Temperature During The First 5 Seconds Of Which
Laser Irradiation At 266nm Took Place
pdb|2VA9|B Chain B, Structure Of Native Tcache After A 9 Seconds Annealing To
Room Temperature During The First 5 Seconds Of Which
Laser Irradiation At 266nm Took Place
pdb|2VJA|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 100k
pdb|2VJA|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 100k
pdb|2VJB|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset D At 100k
pdb|2VJB|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset D At 100k
pdb|2VJC|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-oxo-n,n,n-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 150k
pdb|2VJC|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-oxo-n,n,n-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 150k
pdb|2VJD|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset C At 150k
pdb|2VJD|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset C At 150k
pdb|2VT6|A Chain A, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 9400000 Gy
pdb|2VT6|B Chain B, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 9400000 Gy
pdb|2VT7|A Chain A, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 800000 Gy
pdb|2VT7|B Chain B, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 800000 Gy
pdb|2WFZ|A Chain A, Non-Aged Conjugate Of Torpedo Californica
Acetylcholinesterase With Soman
pdb|2WG0|A Chain A, Aged Conjugate Of Torpedo Californica Acetylcholinesterase
With Soman (Obtained By In Crystallo Aging)
pdb|2WG1|A Chain A, Ternary Complex Of The Aged Conjugate Of Torpedo
Californica Aceylcholinesterase With Soman And 2-Pam
pdb|2WG2|A Chain A, Non-Aged Conjugate Of Torpedo Californica
Acetylcholinesterase With Soman (Alternative Refinement)
pdb|2XI4|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
Aflatoxin B1 (Orthorhombic Space Group)
pdb|2XI4|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With
Aflatoxin B1 (Orthorhombic Space Group)
Length = 537
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 411 SRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLID 470
+R PV+ I + L + P + F + P KP G W TY C +D
Sbjct: 18 TRVPVLSSHISAFLGIPFAEPPVGNMR-FRRPEPKKPWSGVWNASTY----PNNCQQYVD 72
Query: 471 EYAPGFSSS 479
E PGFS S
Sbjct: 73 EQFPGFSGS 81
>pdb|1SOM|A Chain A, Torpedo Californica Acetylcholinesterase Inhibited By
Nerve Agent Gd (Soman).
pdb|1DX6|A Chain A, Structure Of Acetylcholinesterase Complexed With
(-)-Galanthamine At 2.3a Resolution
pdb|1E3Q|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With
Bw284c51
pdb|1E66|A Chain A, Structure Of Acetylcholinesterase Complexed With
(-)-Huprine X At 2.1a Resolution
pdb|1HBJ|A Chain A, X-Ray Crystal Structure Of Complex Between Torpedo
Californica Ache And A Reversible Inhibitor, 4-Amino-5-
Fluo Ro-2-Methyl-3-(3-Trifluoroacetylbenzylthiomethyl)
Quinoline
pdb|1H22|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With (S,S)-(-)-Bis(10)-Hupyridone At 2.15a Resolution
pdb|1H23|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With (S,S)-(-)-Bis(12)-Hupyridone At 2.15a Resolution
pdb|1W4L|A Chain A, Complex Of Tcache With Bis-Acting Galanthamine Derivative
pdb|1W6R|A Chain A, Complex Of Tcache With Galanthamine Derivative
pdb|1W75|A Chain A, Native Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache)
pdb|1W75|B Chain B, Native Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache)
pdb|1W76|A Chain A, Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache) Complexed With Bis-Acting
Galanthamine Derivative
pdb|1W76|B Chain B, Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache) Complexed With Bis-Acting
Galanthamine Derivative
pdb|1ODC|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With N-4'-Quinolyl-N'-9"-(1",2",3",4"
-Tetrahydroacridinyl)-1,8-Diaminooctane At 2.2a
Resolution
pdb|1U65|A Chain A, Ache W. Cpt-11
pdb|1ZGB|A Chain A, Crystal Structure Of Torpedo Californica
Acetylcholinesterase In Complex With An
(R)-Tacrine(10)-Hupyridone Inhibitor.
pdb|1ZGC|A Chain A, Crystal Structure Of Torpedo Californica
Acetylcholinesterase In Complex With An
(Rs)-Tacrine(10)-Hupyridone Inhibitor.
pdb|1ZGC|B Chain B, Crystal Structure Of Torpedo Californica
Acetylcholinesterase In Complex With An
(Rs)-Tacrine(10)-Hupyridone Inhibitor.
pdb|2BAG|A Chain A, 3d Structure Of Torpedo Californica Acetylcholinesterase
Complexed With Ganstigmine
pdb|2CKM|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With
Alkylene-Linked Bis-Tacrine Dimer (7 Carbon Linker)
pdb|2CMF|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With
Alkylene-Linked Bis-Tacrine Dimer (5 Carbon Linker)
pdb|2J4F|A Chain A, Torpedo Acetylcholinesterase - Hg Heavy-Atom Derivative
pdb|1EVE|A Chain A, Three Dimensional Structure Of The Anti-Alzheimer Drug,
E2020 (Aricept), Complexed With Its Target
Acetylcholinesterase
pdb|2J3Q|A Chain A, Torpedo Acetylcholinesterase Complexed With Fluorophore
Thioflavin T
pdb|2VQ6|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With 2-
Pam
pdb|2J3D|A Chain A, Native Monoclinic Form Of Torpedo Acetylcholinesterase
pdb|3M3D|A Chain A, Crystal Structure Of Acetylcholinesterase In Complex With
Xenon
pdb|3ZV7|A Chain A, Torpedo Californica Acetylcholinesterase Inhibition By
Bisnorcymserine
Length = 543
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 411 SRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLID 470
+R PV+ I + L + P + F + P KP G W TY C +D
Sbjct: 18 TRVPVLSSHISAFLGIPFAEPPVGNMR-FRRPEPKKPWSGVWNASTY----PNNCQQYVD 72
Query: 471 EYAPGFSSS 479
E PGFS S
Sbjct: 73 EQFPGFSGS 81
>pdb|1GQR|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With
Rivastigmine
pdb|1GQS|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With Nap
pdb|1JJB|A Chain A, A Neutral Molecule In Cation-Binding Site: Specific
Binding Of Peg-Sh To Acetylcholinesterase From Torpedo
Californica
Length = 532
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 411 SRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLID 470
+R PV+ I + L + P + F + P KP G W TY C +D
Sbjct: 15 TRVPVLSSHISAFLGIPFAEPPVGNMR-FRRPEPKKPWSGVWNASTY----PNNCQQYVD 69
Query: 471 EYAPGFSSS 479
E PGFS S
Sbjct: 70 EQFPGFSGS 78
>pdb|2CEK|A Chain A, Conformational Flexibility In The Peripheral Site Of
Torpedo Californica Acetylcholinesterase Revealed By The
Complex Structure With A Bifunctional Inhibitor
Length = 535
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 411 SRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLID 470
+R PV+ I + L + P + F + P KP G W TY C +D
Sbjct: 18 TRVPVLSSHISAFLGIPFAEPPVGNMR-FRRPEPKKPWSGVWNASTY----PNNCQQYVD 72
Query: 471 EYAPGFSSS 479
E PGFS S
Sbjct: 73 EQFPGFSGS 81
>pdb|1UT6|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With N-9-(1',2',3',4'-Tetrahydroacridinyl)-1,8-
Diaminooctane At 2.4 Angstroms Resolution.
pdb|1ACJ|A Chain A, Quaternary Ligand Binding To Aromatic Residues In The
Active-Site Gorge Of Acetylcholinesterase
pdb|1ACL|A Chain A, Quaternary Ligand Binding To Aromatic Residues In The
Active-Site Gorge Of Acetylcholinesterase
Length = 537
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 411 SRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLID 470
+R PV+ I + L + P + F + P KP G W TY C +D
Sbjct: 18 TRVPVLSSHISAFLGIPFAEPPVGNMR-FRRPEPKKPWSGVWNASTY----PNNCQQYVD 72
Query: 471 EYAPGFSSS 479
E PGFS S
Sbjct: 73 EQFPGFSGS 81
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLER------RHVIGGAAVTEELIPGFKFSR 72
+K+D +VIG G G +AA A+ GL A +E+ + +GG + IP
Sbjct: 2 QKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLD 61
Query: 73 CSY 75
SY
Sbjct: 62 SSY 64
>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide
pdb|3PQZ|B Chain B, Grb7 Sh2 With Peptide
pdb|3PQZ|C Chain C, Grb7 Sh2 With Peptide
pdb|3PQZ|D Chain D, Grb7 Sh2 With Peptide
Length = 117
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV-DGTRVHSSFVLS 323
S+S AI + T+ H ++ E SQ +IG G VDG+ LV + R FVLS
Sbjct: 5 SLSAAIHR--TQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLS 55
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 25 VIGGGHNGLIAAAYLARGGLS-VAVLERRHVIGGAAVTEELIPGFKF 70
++G G + A++LAR G S + + E++ +GG + +E IP F+
Sbjct: 192 LLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE--IPQFRL 236
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 25 VIGGGHNGLIAAAYLARGGLS-VAVLERRHVIGGAAVTEELIPGFKF 70
++G G + A++LAR G S + + E++ +GG + +E IP F+
Sbjct: 192 LLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE--IPQFRL 236
>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex
With A 10 Amino Acid Peptide Py1139
pdb|2QMS|A Chain A, Crystal Structure Of A Signaling Molecule
pdb|2QMS|B Chain B, Crystal Structure Of A Signaling Molecule
pdb|2QMS|C Chain C, Crystal Structure Of A Signaling Molecule
pdb|2QMS|D Chain D, Crystal Structure Of A Signaling Molecule
pdb|2L4K|A Chain A, Water Refined Solution Structure Of The Human Grb7-Sh2
Domain In Complex With The 10 Amino Acid Peptide Py1139
Length = 120
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV-DGTRVHSSFVLS 323
S+S AI + T+ H ++ E SQ +IG G VDG+ LV + R FVLS
Sbjct: 8 SLSAAIHR--TQLWFHGRISREESQRLIGQQGLVDGLFLVRESQRNPQGFVLS 58
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 16 LKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAA 59
+K KK L++G G +G + LA G V ++++R IGG +
Sbjct: 1 MKSKK--ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS 42
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 16 LKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAA 59
+K KK L++G G +G + LA G V ++++R IGG +
Sbjct: 1 MKSKK--ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS 42
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 24 LVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
+V+G G +GL AA LA G V VLE GG T
Sbjct: 37 VVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRT 74
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 16 LKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAA 59
+K KK L++G G +G + LA G V ++++R IGG +
Sbjct: 1 MKSKK--ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS 42
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLER 51
+D +++G G G+IAA L+ G V +LER
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGKKVLLLER 33
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With
A Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With
A Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 13 TRTLKD-KKWDALVIGGGHNGLIAAAYLARGGLSVAVLE 50
+RTL D + ALVIG G+ G +AA L + G+ ++E
Sbjct: 3 SRTLADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVE 41
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 18 DKKWDALVIGGGHNGLIAAAYLARGGLSVAVLE--------RRHVIGGAAVTEELIPGFK 69
+ +D LVIGGG GL A A+ G VAV + + +GG V IP
Sbjct: 30 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKL 89
Query: 70 FSRCSYLQSLLR 81
+ + L ++R
Sbjct: 90 MHQAALLGGMIR 101
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 18 DKKWDALVIGGGHNGLIAAAYLARGGLSVAVLE--------RRHVIGGAAVTEELIPGFK 69
+ +D LVIGGG GL A A+ G VAV + + +GG V IP
Sbjct: 4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKL 63
Query: 70 FSRCSYLQSLLR 81
+ + L ++R
Sbjct: 64 MHQAALLGGMIR 75
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 24 LVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGG 57
+V+GGG GL +A L + G V VLE R GG
Sbjct: 15 VVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG 48
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYL 76
+D +V+G G G +AA A+ GLS A++E ++ GG + IP R + L
Sbjct: 6 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAEL 60
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYL 76
+D +V+G G G +AA A+ GLS A++E ++ GG + IP R + L
Sbjct: 4 YDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAEL 58
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP 66
D VIG G G +AA A+ G +E+ +GG + IP
Sbjct: 8 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIP 52
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 16 LKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVL 49
+K + D+LVIGGG GL AA + GLS VL
Sbjct: 1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVL 34
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
Length = 474
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP 66
D VIG G G +AA A+ G +E+ +GG + IP
Sbjct: 8 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIP 52
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP 66
D VIG G G +AA A+ G +E+ +GG + IP
Sbjct: 29 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIP 73
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 16 LKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVL 49
+K + D+LVIGGG GL AA + GLS VL
Sbjct: 1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVL 34
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 16 LKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVL 49
+K + D+LVIGGG GL AA + GLS VL
Sbjct: 1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVL 34
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter
Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter
Jejuni
Length = 315
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGF 68
D +IGGG GL A Y RGGL V + GG + I +
Sbjct: 6 DVAIIGGGPAGLSAGLYATRGGLKNVVXFEKGXPGGQITSSSEIENY 52
>pdb|4AT0|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
Dehydrogenase From Rhodococcus Jostii Rha1
pdb|4AT2|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
Dehydrogenase From Rhodococcus Jostii Rha1 In Complex
With 4-Androstene-3,17- Dione
Length = 510
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 11 SLTRTLKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGA 58
+ T T D + D +V G G G+ A+ AR G V VLER GGA
Sbjct: 32 ATTVTEWDYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGA 79
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 8 NGVSLTRTLKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61
NG+ T K +V+G G +GL AA L+ G V VLE GG T
Sbjct: 25 NGLKATSNPKH----VVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRT 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,742,148
Number of Sequences: 62578
Number of extensions: 694589
Number of successful extensions: 1978
Number of sequences better than 100.0: 172
Number of HSP's better than 100.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1765
Number of HSP's gapped (non-prelim): 232
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)