Query 038727
Match_columns 565
No_of_seqs 239 out of 2610
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4254 Phytoene desaturase [C 100.0 3.3E-69 7.1E-74 508.8 41.2 544 1-562 1-548 (561)
2 TIGR02734 crtI_fam phytoene de 100.0 1.8E-60 3.9E-65 500.9 43.9 483 23-562 1-494 (502)
3 TIGR02730 carot_isom carotene 100.0 2.5E-56 5.4E-61 466.8 48.4 483 21-561 1-493 (493)
4 TIGR02733 desat_CrtD C-3',4' d 100.0 6.7E-56 1.4E-60 464.7 44.4 471 21-559 2-491 (492)
5 COG1233 Phytoene dehydrogenase 100.0 2.5E-54 5.4E-59 447.1 42.2 480 19-562 2-483 (487)
6 PLN02612 phytoene desaturase 100.0 6.4E-33 1.4E-37 292.2 37.6 441 19-562 92-550 (567)
7 PRK07233 hypothetical protein; 100.0 2.6E-32 5.5E-37 283.6 38.0 420 22-562 1-433 (434)
8 COG1232 HemY Protoporphyrinoge 100.0 1.9E-30 4.2E-35 257.8 30.2 416 22-557 2-443 (444)
9 PRK11883 protoporphyrinogen ox 100.0 5.6E-30 1.2E-34 267.2 30.5 422 21-558 1-450 (451)
10 TIGR00562 proto_IX_ox protopor 100.0 1E-29 2.2E-34 265.7 31.3 243 263-561 217-461 (462)
11 TIGR02731 phytoene_desat phyto 100.0 3E-29 6.5E-34 260.8 33.6 430 22-557 1-453 (453)
12 TIGR02732 zeta_caro_desat caro 100.0 3.4E-29 7.3E-34 259.2 32.3 452 22-557 1-474 (474)
13 PLN02487 zeta-carotene desatur 100.0 1.4E-28 3E-33 255.7 36.2 459 19-560 74-553 (569)
14 PRK12416 protoporphyrinogen ox 100.0 2.6E-28 5.6E-33 254.6 30.7 428 21-560 2-461 (463)
15 PRK07208 hypothetical protein; 100.0 1.6E-27 3.4E-32 249.9 32.5 424 19-560 3-461 (479)
16 PLN02576 protoporphyrinogen ox 100.0 1.2E-26 2.6E-31 244.4 33.3 437 18-562 10-489 (496)
17 PLN02268 probable polyamine ox 100.0 2.1E-26 4.6E-31 238.3 31.8 235 264-560 194-434 (435)
18 PLN02568 polyamine oxidase 99.9 2.6E-25 5.7E-30 231.5 30.1 100 263-368 234-339 (539)
19 COG1231 Monoamine oxidase [Ami 99.9 3E-25 6.4E-30 214.9 25.8 240 265-561 203-448 (450)
20 PLN02529 lysine-specific histo 99.9 1.5E-24 3.2E-29 229.9 33.2 418 19-562 159-600 (738)
21 PLN02328 lysine-specific histo 99.9 7.5E-25 1.6E-29 232.9 30.7 245 261-563 427-682 (808)
22 PLN03000 amine oxidase 99.9 8.7E-25 1.9E-29 231.9 31.1 242 261-561 371-624 (881)
23 PLN02676 polyamine oxidase 99.9 1.6E-24 3.4E-29 224.4 31.5 243 267-562 220-475 (487)
24 PF01593 Amino_oxidase: Flavin 99.9 1.7E-26 3.7E-31 240.7 14.7 238 266-557 207-450 (450)
25 TIGR03467 HpnE squalene-associ 99.9 1.3E-23 2.9E-28 217.2 32.6 401 34-558 1-419 (419)
26 KOG0029 Amine oxidase [Seconda 99.9 4.1E-23 8.9E-28 211.0 27.8 239 264-561 212-460 (501)
27 PLN02976 amine oxidase 99.9 2.1E-22 4.6E-27 219.0 32.9 243 264-562 929-1188(1713)
28 KOG0685 Flavin-containing amin 99.9 3.7E-21 8E-26 186.2 27.7 254 265-561 217-492 (498)
29 PTZ00363 rab-GDP dissociation 99.9 6E-20 1.3E-24 186.1 29.7 332 18-441 2-358 (443)
30 COG3349 Uncharacterized conser 99.9 4.7E-20 1E-24 182.6 24.4 440 21-561 1-464 (485)
31 KOG1276 Protoporphyrinogen oxi 99.9 1.7E-19 3.8E-24 171.6 25.9 241 265-557 243-490 (491)
32 COG3380 Predicted NAD/FAD-depe 99.8 2.1E-19 4.6E-24 160.9 14.8 94 265-367 102-198 (331)
33 COG2907 Predicted NAD/FAD-bind 99.8 3.5E-18 7.5E-23 158.2 20.5 286 17-360 5-301 (447)
34 PRK13977 myosin-cross-reactive 99.6 1.4E-14 3.1E-19 148.1 21.3 69 19-88 21-94 (576)
35 PF00996 GDI: GDP dissociation 99.5 1.4E-12 3E-17 130.6 21.5 330 18-441 2-357 (438)
36 COG2081 Predicted flavoprotein 99.5 3.8E-13 8.3E-18 129.0 15.6 67 260-329 100-167 (408)
37 PF01266 DAO: FAD dependent ox 99.5 2.5E-13 5.5E-18 137.2 14.7 68 265-336 138-208 (358)
38 PRK11259 solA N-methyltryptoph 99.5 4E-11 8.6E-16 122.1 27.5 61 271-336 149-209 (376)
39 TIGR01373 soxB sarcosine oxida 99.5 1E-10 2.2E-15 120.3 30.1 57 271-329 183-240 (407)
40 PF13450 NAD_binding_8: NAD(P) 99.5 5.9E-14 1.3E-18 103.0 4.2 54 25-79 1-54 (68)
41 TIGR03329 Phn_aa_oxid putative 99.4 7E-11 1.5E-15 123.0 27.0 56 270-329 182-237 (460)
42 TIGR01377 soxA_mon sarcosine o 99.4 1.3E-10 2.8E-15 118.5 28.2 56 271-329 145-200 (380)
43 COG0579 Predicted dehydrogenas 99.4 9.1E-12 2E-16 123.9 18.9 60 270-330 152-212 (429)
44 TIGR00031 UDP-GALP_mutase UDP- 99.4 3E-12 6.5E-17 127.0 14.4 66 21-87 2-68 (377)
45 PF03486 HI0933_like: HI0933-l 99.4 2.8E-12 6E-17 129.1 12.0 64 265-329 102-166 (409)
46 PRK11728 hydroxyglutarate oxid 99.4 3E-11 6.5E-16 123.4 17.9 57 270-329 148-204 (393)
47 COG1635 THI4 Ribulose 1,5-bisp 99.3 2E-11 4.4E-16 106.8 12.6 42 19-60 29-70 (262)
48 PTZ00383 malate:quinone oxidor 99.3 5.4E-11 1.2E-15 122.9 17.9 58 271-330 211-274 (497)
49 PRK11101 glpA sn-glycerol-3-ph 99.3 6.7E-11 1.5E-15 125.1 17.5 58 271-329 149-211 (546)
50 PRK12409 D-amino acid dehydrog 99.2 3.2E-10 6.9E-15 116.7 18.1 57 271-329 197-258 (410)
51 TIGR00292 thiazole biosynthesi 99.2 2.3E-10 5.1E-15 108.0 14.3 41 19-59 20-60 (254)
52 PRK00711 D-amino acid dehydrog 99.2 4.9E-10 1.1E-14 115.7 17.9 58 270-329 200-257 (416)
53 PRK08274 tricarballylate dehyd 99.2 7.5E-10 1.6E-14 115.8 18.6 63 266-329 126-192 (466)
54 PRK07121 hypothetical protein; 99.2 7.2E-10 1.6E-14 116.5 18.4 61 269-329 175-239 (492)
55 TIGR03364 HpnW_proposed FAD de 99.2 9.1E-10 2E-14 111.5 18.1 57 271-336 145-202 (365)
56 PRK04176 ribulose-1,5-biphosph 99.2 3.5E-10 7.5E-15 107.3 13.9 60 271-330 104-174 (257)
57 KOG2820 FAD-dependent oxidored 99.2 3.3E-10 7.1E-15 105.6 13.2 64 272-337 154-218 (399)
58 PF01946 Thi4: Thi4 family; PD 99.2 1.7E-10 3.7E-15 102.0 10.1 42 19-60 16-57 (230)
59 PRK06481 fumarate reductase fl 99.2 1.4E-09 3E-14 114.3 18.7 58 271-329 190-251 (506)
60 PRK08244 hypothetical protein; 99.2 9.7E-09 2.1E-13 108.2 24.9 63 272-336 101-166 (493)
61 PRK01747 mnmC bifunctional tRN 99.2 6.2E-10 1.3E-14 121.1 16.1 67 265-336 399-468 (662)
62 PRK07190 hypothetical protein; 99.1 1.3E-09 2.7E-14 113.7 17.2 63 272-336 110-172 (487)
63 PRK08773 2-octaprenyl-3-methyl 99.1 1.2E-09 2.6E-14 111.8 16.8 63 272-336 114-176 (392)
64 COG0644 FixC Dehydrogenases (f 99.1 7.5E-10 1.6E-14 113.0 14.8 65 272-337 96-160 (396)
65 PRK10157 putative oxidoreducta 99.1 8.7E-10 1.9E-14 113.4 15.2 62 272-335 109-170 (428)
66 PLN02464 glycerol-3-phosphate 99.1 2.7E-09 5.8E-14 114.3 18.7 59 270-329 231-296 (627)
67 PRK10015 oxidoreductase; Provi 99.1 1.9E-09 4.2E-14 110.8 16.4 61 272-334 109-169 (429)
68 PRK06847 hypothetical protein; 99.1 1.1E-09 2.5E-14 111.3 14.6 62 272-335 108-169 (375)
69 COG0578 GlpA Glycerol-3-phosph 99.1 1.4E-09 3E-14 110.7 14.9 62 271-336 164-230 (532)
70 PRK07364 2-octaprenyl-6-methox 99.1 1.9E-09 4.1E-14 111.3 15.9 63 272-336 122-188 (415)
71 PRK05714 2-octaprenyl-3-methyl 99.1 1.4E-09 3E-14 111.8 14.5 64 272-337 113-176 (405)
72 PF00890 FAD_binding_2: FAD bi 99.1 1.8E-09 3.9E-14 111.5 15.3 60 269-329 139-203 (417)
73 TIGR01988 Ubi-OHases Ubiquinon 99.1 1.9E-09 4.1E-14 110.2 15.1 63 272-336 107-170 (385)
74 PRK07045 putative monooxygenas 99.1 2.9E-09 6.3E-14 108.8 16.2 63 272-334 107-170 (388)
75 PRK12845 3-ketosteroid-delta-1 99.1 1.5E-08 3.2E-13 107.4 21.5 64 265-330 212-279 (564)
76 PRK05249 soluble pyridine nucl 99.1 4.6E-10 1E-14 117.3 9.9 58 270-329 215-272 (461)
77 PRK07236 hypothetical protein; 99.1 5E-09 1.1E-13 106.8 16.8 49 285-335 112-160 (386)
78 PRK06184 hypothetical protein; 99.1 2.7E-09 5.9E-14 112.6 15.3 63 272-336 110-175 (502)
79 PRK12266 glpD glycerol-3-phosp 99.1 1.9E-09 4E-14 113.3 13.8 57 271-329 155-216 (508)
80 TIGR01984 UbiH 2-polyprenyl-6- 99.0 3.3E-09 7.1E-14 108.3 15.2 63 272-336 106-169 (382)
81 COG0562 Glf UDP-galactopyranos 99.0 1.1E-09 2.4E-14 101.5 10.2 104 20-127 1-106 (374)
82 COG0654 UbiH 2-polyprenyl-6-me 99.0 7.7E-09 1.7E-13 105.3 17.4 64 271-336 104-169 (387)
83 TIGR02032 GG-red-SF geranylger 99.0 4.7E-09 1E-13 103.0 15.4 62 272-335 92-154 (295)
84 TIGR01350 lipoamide_DH dihydro 99.0 1.8E-09 4E-14 112.8 12.9 58 270-329 210-269 (461)
85 TIGR01813 flavo_cyto_c flavocy 99.0 7.4E-09 1.6E-13 107.5 17.2 59 271-329 130-192 (439)
86 PRK08163 salicylate hydroxylas 99.0 6.6E-09 1.4E-13 106.5 16.4 62 272-335 110-172 (396)
87 PRK07588 hypothetical protein; 99.0 4.4E-09 9.5E-14 107.6 15.0 61 272-335 104-164 (391)
88 PRK07333 2-octaprenyl-6-methox 99.0 7.7E-09 1.7E-13 106.3 16.6 63 272-336 112-174 (403)
89 PRK07608 ubiquinone biosynthes 99.0 3.4E-09 7.3E-14 108.4 13.6 62 272-336 112-174 (388)
90 KOG1439 RAB proteins geranylge 99.0 1.1E-07 2.3E-12 91.3 22.1 254 18-324 2-284 (440)
91 PRK13339 malate:quinone oxidor 99.0 4.3E-09 9.2E-14 108.5 13.8 58 270-329 183-247 (497)
92 PRK08020 ubiF 2-octaprenyl-3-m 99.0 9E-09 1.9E-13 105.3 16.2 63 272-336 113-176 (391)
93 KOG2844 Dimethylglycine dehydr 99.0 1.1E-08 2.3E-13 103.7 16.0 64 265-330 178-244 (856)
94 PRK12835 3-ketosteroid-delta-1 99.0 2.4E-08 5.3E-13 106.4 19.9 60 270-329 212-275 (584)
95 TIGR01320 mal_quin_oxido malat 99.0 1.5E-08 3.3E-13 105.2 17.8 64 265-329 169-240 (483)
96 COG0665 DadA Glycine/D-amino a 99.0 1.4E-08 3.1E-13 103.8 17.5 56 271-329 156-212 (387)
97 PRK07494 2-octaprenyl-6-methox 99.0 3.4E-09 7.4E-14 108.3 12.9 63 272-336 112-174 (388)
98 PRK09126 hypothetical protein; 99.0 6E-09 1.3E-13 106.7 14.6 62 273-336 112-174 (392)
99 PRK06134 putative FAD-binding 99.0 2.4E-08 5.1E-13 106.7 19.1 58 271-329 217-278 (581)
100 PRK12842 putative succinate de 99.0 1.6E-08 3.6E-13 108.0 17.9 58 271-329 214-275 (574)
101 PRK08013 oxidoreductase; Provi 99.0 9.6E-09 2.1E-13 105.2 14.9 63 272-336 112-175 (400)
102 PRK06116 glutathione reductase 99.0 2.6E-09 5.6E-14 111.1 10.8 59 270-329 207-265 (450)
103 PRK06452 sdhA succinate dehydr 99.0 1.1E-08 2.4E-13 108.8 15.7 58 271-329 136-198 (566)
104 TIGR01424 gluta_reduc_2 glutat 99.0 9.1E-10 2E-14 114.2 7.3 58 270-329 206-263 (446)
105 PRK05257 malate:quinone oxidor 99.0 2E-08 4.4E-13 104.4 17.2 64 265-329 174-246 (494)
106 PRK06834 hypothetical protein; 99.0 9.4E-09 2E-13 107.4 14.4 63 272-336 101-163 (488)
107 PLN02172 flavin-containing mon 99.0 1.2E-08 2.5E-13 105.3 14.9 43 19-61 9-51 (461)
108 PRK13369 glycerol-3-phosphate 99.0 6.1E-09 1.3E-13 109.6 13.0 57 271-329 155-215 (502)
109 PRK07573 sdhA succinate dehydr 99.0 2.5E-08 5.3E-13 107.3 17.7 55 274-329 173-232 (640)
110 PRK06416 dihydrolipoamide dehy 99.0 7.3E-10 1.6E-14 115.7 5.9 57 271-329 213-272 (462)
111 PRK08850 2-octaprenyl-6-methox 98.9 1.7E-08 3.6E-13 103.7 15.8 62 273-336 113-175 (405)
112 PRK08849 2-octaprenyl-3-methyl 98.9 2.3E-08 4.9E-13 101.9 16.5 62 273-336 112-174 (384)
113 PRK12844 3-ketosteroid-delta-1 98.9 3E-08 6.6E-13 105.2 17.8 59 270-329 207-269 (557)
114 PRK09078 sdhA succinate dehydr 98.9 4.8E-08 1E-12 104.6 19.0 59 271-329 149-212 (598)
115 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 2E-08 4.3E-13 102.3 15.5 65 272-337 104-171 (390)
116 PRK12839 hypothetical protein; 98.9 7.8E-08 1.7E-12 102.2 20.4 49 13-61 1-49 (572)
117 PRK05732 2-octaprenyl-6-methox 98.9 1.9E-08 4.2E-13 103.1 15.4 62 273-336 114-176 (395)
118 PF13738 Pyr_redox_3: Pyridine 98.9 8E-09 1.7E-13 95.3 11.3 56 272-329 83-138 (203)
119 PRK06175 L-aspartate oxidase; 98.9 1.8E-08 4E-13 103.6 15.1 58 271-329 128-189 (433)
120 PLN02661 Putative thiazole syn 98.9 2E-08 4.4E-13 97.4 14.4 41 19-59 91-132 (357)
121 PRK06183 mhpA 3-(3-hydroxyphen 98.9 3E-08 6.6E-13 105.5 17.1 63 273-337 115-182 (538)
122 PRK07843 3-ketosteroid-delta-1 98.9 3.8E-08 8.3E-13 104.6 17.8 59 270-329 207-269 (557)
123 TIGR01812 sdhA_frdA_Gneg succi 98.9 2.9E-08 6.3E-13 106.2 17.0 58 271-329 129-191 (566)
124 PRK07818 dihydrolipoamide dehy 98.9 9.5E-09 2.1E-13 107.3 12.8 58 270-329 212-273 (466)
125 PLN02697 lycopene epsilon cycl 98.9 3.1E-08 6.7E-13 103.1 16.1 56 272-329 193-248 (529)
126 PRK08243 4-hydroxybenzoate 3-m 98.9 2.3E-08 5E-13 102.1 15.0 64 272-337 104-171 (392)
127 TIGR01421 gluta_reduc_1 glutat 98.9 1.8E-09 4E-14 111.8 6.8 60 270-330 206-266 (450)
128 PRK12837 3-ketosteroid-delta-1 98.9 5.6E-08 1.2E-12 102.4 18.0 42 18-60 5-46 (513)
129 PRK06185 hypothetical protein; 98.9 3.4E-08 7.4E-13 101.6 16.0 64 272-336 109-176 (407)
130 PTZ00139 Succinate dehydrogena 98.9 7.7E-08 1.7E-12 103.2 19.1 59 270-329 165-229 (617)
131 PRK05329 anaerobic glycerol-3- 98.9 2.9E-08 6.3E-13 100.5 15.0 57 272-329 260-318 (422)
132 PRK07803 sdhA succinate dehydr 98.9 3.8E-08 8.3E-13 105.8 16.8 59 270-329 137-213 (626)
133 PRK06126 hypothetical protein; 98.9 2.9E-08 6.3E-13 106.0 15.7 63 272-336 127-195 (545)
134 PRK06753 hypothetical protein; 98.9 3.4E-08 7.3E-13 100.4 15.4 62 272-337 99-160 (373)
135 PLN02507 glutathione reductase 98.9 4.6E-09 9.9E-14 110.0 9.2 58 270-329 243-300 (499)
136 PRK06370 mercuric reductase; V 98.9 1.6E-09 3.4E-14 113.2 5.7 47 18-65 3-49 (463)
137 PRK08958 sdhA succinate dehydr 98.9 1.2E-07 2.5E-12 101.3 20.0 59 270-329 142-206 (588)
138 PRK05868 hypothetical protein; 98.9 2.6E-08 5.6E-13 100.8 14.3 52 283-336 116-167 (372)
139 PRK08010 pyridine nucleotide-d 98.9 7.8E-09 1.7E-13 107.3 10.6 57 270-329 198-254 (441)
140 PRK06617 2-octaprenyl-6-methox 98.9 4.2E-08 9.1E-13 99.5 15.7 63 272-337 105-168 (374)
141 PRK07057 sdhA succinate dehydr 98.9 1.1E-07 2.3E-12 101.7 19.1 60 270-329 147-211 (591)
142 PRK08626 fumarate reductase fl 98.9 7.1E-08 1.5E-12 104.0 17.8 60 269-329 156-220 (657)
143 PRK07804 L-aspartate oxidase; 98.9 1.6E-07 3.5E-12 99.5 20.2 60 270-329 143-210 (541)
144 PRK12843 putative FAD-binding 98.9 1.5E-07 3.2E-12 100.6 19.9 59 271-330 221-283 (578)
145 PLN00128 Succinate dehydrogena 98.9 1E-07 2.3E-12 102.2 18.6 59 270-329 186-250 (635)
146 PRK12834 putative FAD-binding 98.9 7E-08 1.5E-12 102.7 17.1 42 19-60 3-46 (549)
147 PRK07251 pyridine nucleotide-d 98.9 1.3E-08 2.7E-13 105.7 10.9 48 19-66 2-50 (438)
148 COG1249 Lpd Pyruvate/2-oxoglut 98.8 9.3E-09 2E-13 104.5 9.4 64 265-330 208-273 (454)
149 TIGR00275 flavoprotein, HI0933 98.8 3.7E-08 7.9E-13 100.4 13.9 58 269-329 103-160 (400)
150 PRK07512 L-aspartate oxidase; 98.8 5.2E-08 1.1E-12 102.5 15.4 59 270-329 135-197 (513)
151 PTZ00058 glutathione reductase 98.8 9.5E-09 2.1E-13 108.2 9.4 51 15-66 43-93 (561)
152 PRK05976 dihydrolipoamide dehy 98.8 1.5E-08 3.2E-13 106.1 10.8 47 19-66 3-49 (472)
153 PRK08401 L-aspartate oxidase; 98.8 1.9E-07 4.2E-12 97.2 19.1 57 271-330 120-176 (466)
154 PRK07395 L-aspartate oxidase; 98.8 1.1E-07 2.3E-12 100.7 17.3 60 270-329 133-197 (553)
155 PRK06115 dihydrolipoamide dehy 98.8 3.8E-09 8.2E-14 110.1 6.2 47 20-66 3-49 (466)
156 PRK05945 sdhA succinate dehydr 98.8 5.3E-08 1.1E-12 104.0 14.9 59 270-329 134-197 (575)
157 PRK08275 putative oxidoreducta 98.8 1.7E-07 3.7E-12 99.8 18.7 58 271-329 137-200 (554)
158 PRK06069 sdhA succinate dehydr 98.8 8.7E-08 1.9E-12 102.5 16.4 59 270-329 136-200 (577)
159 PRK06854 adenylylsulfate reduc 98.8 1.6E-07 3.5E-12 100.6 18.5 58 271-329 132-195 (608)
160 TIGR02485 CobZ_N-term precorri 98.8 1.1E-07 2.4E-12 98.3 16.8 63 265-328 117-182 (432)
161 PRK08132 FAD-dependent oxidore 98.8 1.4E-07 3E-12 100.7 17.5 63 273-337 127-193 (547)
162 PF00732 GMC_oxred_N: GMC oxid 98.8 1.2E-08 2.6E-13 100.1 8.8 77 265-343 186-272 (296)
163 PF01494 FAD_binding_3: FAD bi 98.8 1.3E-08 2.8E-13 102.7 8.8 65 272-337 112-180 (356)
164 TIGR00551 nadB L-aspartate oxi 98.8 3.8E-07 8.3E-12 95.6 19.4 58 271-329 128-189 (488)
165 TIGR01292 TRX_reduct thioredox 98.8 1E-07 2.2E-12 93.7 14.1 51 276-329 62-112 (300)
166 PRK06327 dihydrolipoamide dehy 98.8 5.3E-09 1.1E-13 109.4 5.0 59 269-329 222-284 (475)
167 PLN02463 lycopene beta cyclase 98.8 8.1E-08 1.8E-12 98.5 13.4 55 272-329 115-169 (447)
168 PRK05192 tRNA uridine 5-carbox 98.8 2.9E-08 6.2E-13 103.4 10.2 56 272-329 101-157 (618)
169 TIGR02023 BchP-ChlP geranylger 98.8 1.2E-07 2.7E-12 96.6 14.8 62 272-336 93-162 (388)
170 PRK06263 sdhA succinate dehydr 98.8 2.2E-07 4.7E-12 98.8 16.8 58 271-329 134-197 (543)
171 TIGR03378 glycerol3P_GlpB glyc 98.8 1E-07 2.2E-12 95.2 13.3 57 271-328 263-321 (419)
172 PLN02985 squalene monooxygenas 98.8 3.4E-07 7.4E-12 96.0 17.8 64 272-337 148-216 (514)
173 TIGR01989 COQ6 Ubiquinone bios 98.8 1.6E-07 3.5E-12 97.2 15.3 65 272-337 118-191 (437)
174 TIGR01423 trypano_reduc trypan 98.8 1.3E-08 2.8E-13 105.9 7.1 59 270-329 230-288 (486)
175 PRK06475 salicylate hydroxylas 98.8 2.2E-07 4.8E-12 95.2 16.1 63 272-336 108-174 (400)
176 PTZ00306 NADH-dependent fumara 98.8 4.5E-07 9.7E-12 104.2 20.1 44 17-60 406-449 (1167)
177 PLN02815 L-aspartate oxidase 98.8 2.1E-07 4.5E-12 98.9 16.1 59 271-329 155-222 (594)
178 PRK07538 hypothetical protein; 98.7 1.6E-07 3.5E-12 96.7 15.0 64 272-337 103-173 (413)
179 PRK08641 sdhA succinate dehydr 98.7 2.8E-07 6.2E-12 98.5 17.2 58 271-329 133-200 (589)
180 PRK08205 sdhA succinate dehydr 98.7 3.8E-07 8.3E-12 97.5 18.0 59 271-329 140-206 (583)
181 PRK08071 L-aspartate oxidase; 98.7 1.8E-07 3.9E-12 98.3 15.2 57 271-329 130-190 (510)
182 PF06100 Strep_67kDa_ant: Stre 98.7 2.1E-07 4.4E-12 93.1 14.3 55 20-74 2-61 (500)
183 PLN02546 glutathione reductase 98.7 1.8E-08 3.9E-13 106.1 7.1 59 270-329 292-350 (558)
184 TIGR01790 carotene-cycl lycope 98.7 1.6E-07 3.6E-12 95.9 13.8 56 272-329 86-141 (388)
185 TIGR02462 pyranose_ox pyranose 98.7 4.4E-07 9.4E-12 94.5 16.8 38 21-58 1-38 (544)
186 PF12831 FAD_oxidored: FAD dep 98.7 1.1E-08 2.3E-13 105.3 4.9 57 279-337 98-157 (428)
187 TIGR01811 sdhA_Bsu succinate d 98.7 3.5E-07 7.6E-12 97.9 16.5 59 271-329 129-196 (603)
188 PRK09231 fumarate reductase fl 98.7 3.4E-07 7.4E-12 97.7 16.1 58 271-329 133-196 (582)
189 PRK15317 alkyl hydroperoxide r 98.7 2.8E-07 6E-12 97.4 15.4 55 273-329 268-322 (517)
190 TIGR01176 fum_red_Fp fumarate 98.7 9E-07 1.9E-11 94.3 18.7 59 270-329 131-195 (580)
191 PTZ00052 thioredoxin reductase 98.7 1.7E-07 3.6E-12 98.4 13.0 57 271-329 222-278 (499)
192 PF01134 GIDA: Glucose inhibit 98.7 6.6E-08 1.4E-12 95.4 9.0 53 273-327 97-150 (392)
193 KOG1335 Dihydrolipoamide dehyd 98.7 7.6E-08 1.6E-12 91.5 8.4 48 19-66 38-85 (506)
194 KOG2404 Fumarate reductase, fl 98.6 5.3E-07 1.1E-11 83.8 13.3 39 22-60 11-49 (477)
195 KOG2415 Electron transfer flav 98.6 1.5E-07 3.2E-12 90.3 9.9 60 270-329 182-256 (621)
196 TIGR03219 salicylate_mono sali 98.6 2.6E-07 5.6E-12 95.2 12.7 60 272-335 106-165 (414)
197 TIGR03140 AhpF alkyl hydropero 98.6 4.3E-07 9.3E-12 95.9 14.3 54 274-329 270-323 (515)
198 PRK06996 hypothetical protein; 98.6 7.8E-07 1.7E-11 91.1 15.8 53 272-326 116-171 (398)
199 KOG1298 Squalene monooxygenase 98.6 4.7E-07 1E-11 86.3 12.7 37 17-53 42-78 (509)
200 TIGR02028 ChlP geranylgeranyl 98.6 7.9E-07 1.7E-11 90.8 15.5 36 21-56 1-36 (398)
201 PRK09077 L-aspartate oxidase; 98.6 1.7E-06 3.8E-11 91.6 18.5 59 271-329 138-207 (536)
202 PRK02106 choline dehydrogenase 98.6 2.4E-07 5.3E-12 99.0 11.9 60 274-335 203-267 (560)
203 PRK11445 putative oxidoreducta 98.6 1.6E-06 3.4E-11 87.2 15.6 53 282-336 109-164 (351)
204 PRK07845 flavoprotein disulfid 98.6 2.5E-07 5.4E-12 96.5 9.9 58 270-329 217-274 (466)
205 COG0029 NadB Aspartate oxidase 98.5 1.5E-05 3.4E-10 79.3 21.2 58 271-329 133-196 (518)
206 PRK09897 hypothetical protein; 98.5 2.7E-06 6E-11 88.8 17.0 54 272-327 108-164 (534)
207 TIGR00136 gidA glucose-inhibit 98.5 8.9E-07 1.9E-11 92.3 12.7 56 272-329 97-154 (617)
208 PF06039 Mqo: Malate:quinone o 98.5 6.6E-06 1.4E-10 81.6 17.7 60 270-330 180-245 (488)
209 TIGR01438 TGR thioredoxin and 98.5 1.4E-07 3.1E-12 98.4 6.5 58 270-329 219-279 (484)
210 TIGR02061 aprA adenosine phosp 98.5 6.8E-06 1.5E-10 87.6 18.9 59 271-329 126-191 (614)
211 PTZ00367 squalene epoxidase; P 98.5 1.3E-06 2.8E-11 92.2 13.2 35 19-53 32-66 (567)
212 COG5044 MRS6 RAB proteins gera 98.5 9.5E-06 2.1E-10 77.2 16.9 61 261-324 219-279 (434)
213 PF04820 Trp_halogenase: Trypt 98.5 2.9E-06 6.3E-11 87.7 14.8 57 272-329 155-211 (454)
214 PRK08294 phenol 2-monooxygenas 98.5 3.1E-06 6.6E-11 91.3 15.4 65 272-337 142-218 (634)
215 PF05834 Lycopene_cycl: Lycope 98.5 1.9E-06 4.2E-11 87.1 13.1 55 272-329 88-142 (374)
216 COG2509 Uncharacterized FAD-de 98.5 9.3E-07 2E-11 86.7 10.0 58 270-328 172-229 (486)
217 TIGR01810 betA choline dehydro 98.4 7.6E-07 1.7E-11 94.6 10.2 62 272-335 194-260 (532)
218 COG2072 TrkA Predicted flavopr 98.4 2.5E-07 5.5E-12 95.1 6.3 56 16-72 4-60 (443)
219 KOG2853 Possible oxidoreductas 98.4 4.3E-06 9.3E-11 78.5 13.5 45 19-63 85-142 (509)
220 COG3075 GlpB Anaerobic glycero 98.4 4.5E-06 9.8E-11 78.2 13.4 57 272-329 259-317 (421)
221 KOG2665 Predicted FAD-dependen 98.4 3.2E-05 6.8E-10 72.1 18.4 58 271-329 196-257 (453)
222 COG1252 Ndh NADH dehydrogenase 98.4 1.6E-06 3.4E-11 86.2 10.7 58 266-329 204-262 (405)
223 TIGR03197 MnmC_Cterm tRNA U-34 98.4 3.2E-05 6.9E-10 78.8 20.6 60 271-335 135-194 (381)
224 PRK13800 putative oxidoreducta 98.4 1E-05 2.2E-10 91.1 17.9 36 19-54 12-47 (897)
225 PLN00093 geranylgeranyl diphos 98.4 4.5E-07 9.7E-12 93.5 5.6 38 16-53 35-72 (450)
226 PRK06467 dihydrolipoamide dehy 98.3 6.7E-07 1.4E-11 93.4 5.8 47 19-65 3-49 (471)
227 KOG2852 Possible oxidoreductas 98.3 3.9E-06 8.5E-11 77.0 9.7 63 271-337 147-214 (380)
228 COG2303 BetA Choline dehydroge 98.3 5.1E-06 1.1E-10 87.7 12.2 66 268-335 199-271 (542)
229 PRK14694 putative mercuric red 98.3 8.2E-07 1.8E-11 92.9 6.0 57 270-329 217-273 (468)
230 KOG4405 GDP dissociation inhib 98.3 2.1E-05 4.5E-10 75.7 14.6 118 200-324 215-340 (547)
231 PTZ00318 NADH dehydrogenase-li 98.3 8E-06 1.7E-10 84.2 12.5 52 271-328 228-279 (424)
232 PRK09754 phenylpropionate diox 98.3 5.2E-06 1.1E-10 84.9 11.0 56 271-329 186-241 (396)
233 PLN02852 ferredoxin-NADP+ redu 98.3 1.5E-06 3.3E-11 89.6 6.7 43 19-61 25-69 (491)
234 PRK06292 dihydrolipoamide dehy 98.2 1.1E-06 2.3E-11 92.0 5.5 42 19-61 2-43 (460)
235 PRK12779 putative bifunctional 98.2 1.2E-06 2.5E-11 97.9 5.9 42 19-60 305-346 (944)
236 TIGR03315 Se_ygfK putative sel 98.2 1.3E-06 2.8E-11 96.7 5.9 43 19-61 536-578 (1012)
237 PF13454 NAD_binding_9: FAD-NA 98.2 2.1E-05 4.5E-10 68.8 12.1 50 275-327 105-155 (156)
238 PRK14727 putative mercuric red 98.2 1.8E-06 3.8E-11 90.5 6.3 58 270-330 227-284 (479)
239 KOG1399 Flavin-containing mono 98.2 1.6E-06 3.4E-11 88.0 5.6 44 19-62 5-48 (448)
240 PRK13748 putative mercuric red 98.2 1.6E-06 3.5E-11 93.1 5.5 57 270-329 309-365 (561)
241 COG1148 HdrA Heterodisulfide r 98.2 1.6E-06 3.5E-11 85.2 4.6 43 20-62 124-166 (622)
242 PRK12831 putative oxidoreducta 98.2 2E-06 4.4E-11 89.3 5.7 42 19-60 139-180 (464)
243 COG0492 TrxB Thioredoxin reduc 98.2 1.9E-06 4E-11 83.5 5.0 40 19-59 2-42 (305)
244 TIGR02053 MerA mercuric reduct 98.2 2E-06 4.3E-11 90.0 5.4 58 270-329 206-266 (463)
245 PRK13512 coenzyme A disulfide 98.2 1E-05 2.3E-10 83.7 10.6 53 271-329 189-241 (438)
246 TIGR03143 AhpF_homolog putativ 98.2 2.5E-06 5.3E-11 90.9 6.1 42 19-61 3-44 (555)
247 PRK14989 nitrite reductase sub 98.1 2E-05 4.3E-10 87.3 12.2 58 272-329 188-245 (847)
248 PRK09564 coenzyme A disulfide 98.1 1.8E-05 3.9E-10 82.4 11.3 56 271-329 191-246 (444)
249 PRK09853 putative selenate red 98.1 3.4E-06 7.5E-11 93.0 5.7 43 19-61 538-580 (1019)
250 KOG2614 Kynurenine 3-monooxyge 98.1 3.6E-06 7.7E-11 81.9 4.9 36 20-55 2-37 (420)
251 PRK04965 NADH:flavorubredoxin 98.1 1.7E-05 3.7E-10 80.6 9.9 57 271-329 183-239 (377)
252 TIGR01372 soxA sarcosine oxida 98.0 6.1E-06 1.3E-10 93.6 6.7 43 19-61 162-204 (985)
253 TIGR01316 gltA glutamate synth 98.0 6E-06 1.3E-10 85.7 6.0 42 19-60 132-173 (449)
254 PF00743 FMO-like: Flavin-bind 98.0 3.4E-06 7.4E-11 88.4 4.2 40 21-60 2-41 (531)
255 PRK12769 putative oxidoreducta 98.0 6.5E-06 1.4E-10 89.6 6.3 43 19-61 326-368 (654)
256 PTZ00153 lipoamide dehydrogena 98.0 6.9E-06 1.5E-10 88.0 6.1 48 19-66 115-163 (659)
257 PRK10262 thioredoxin reductase 98.0 6.4E-06 1.4E-10 81.8 5.4 42 19-61 5-46 (321)
258 PRK12775 putative trifunctiona 98.0 5.5E-06 1.2E-10 93.5 5.4 42 19-60 429-470 (1006)
259 PLN02927 antheraxanthin epoxid 98.0 7.6E-06 1.6E-10 87.1 5.6 60 272-335 195-254 (668)
260 PTZ00188 adrenodoxin reductase 98.0 9.5E-06 2.1E-10 82.5 5.9 42 20-61 39-81 (506)
261 PRK12810 gltD glutamate syntha 98.0 1.1E-05 2.3E-10 84.4 6.0 42 19-60 142-183 (471)
262 PRK12778 putative bifunctional 97.9 9.9E-06 2.2E-10 89.7 5.9 42 19-60 430-471 (752)
263 COG4716 Myosin-crossreactive a 97.9 0.00021 4.5E-09 68.3 13.7 56 20-75 22-82 (587)
264 TIGR01789 lycopene_cycl lycope 97.9 9.4E-06 2E-10 81.8 4.9 37 22-58 1-39 (370)
265 COG0445 GidA Flavin-dependent 97.9 1.9E-05 4.2E-10 79.3 6.9 52 275-328 104-157 (621)
266 PRK05335 tRNA (uracil-5-)-meth 97.9 1.1E-05 2.5E-10 80.6 5.2 36 21-56 3-38 (436)
267 TIGR01318 gltD_gamma_fam gluta 97.9 1.4E-05 3E-10 83.3 6.1 43 19-61 140-182 (467)
268 PRK12809 putative oxidoreducta 97.9 1.6E-05 3.6E-10 86.1 6.5 51 19-71 309-359 (639)
269 PRK12814 putative NADPH-depend 97.9 1.5E-05 3.2E-10 86.5 6.0 42 19-60 192-233 (652)
270 PRK11749 dihydropyrimidine deh 97.9 1.6E-05 3.4E-10 83.0 5.9 42 19-60 139-180 (457)
271 COG0493 GltD NADPH-dependent g 97.9 1.2E-05 2.6E-10 82.1 4.8 41 21-61 124-164 (457)
272 TIGR02374 nitri_red_nirB nitri 97.9 0.00011 2.3E-09 81.6 12.1 55 272-328 183-237 (785)
273 KOG0399 Glutamate synthase [Am 97.9 1.6E-05 3.5E-10 85.2 5.3 42 20-61 1785-1826(2142)
274 KOG0042 Glycerol-3-phosphate d 97.9 3.3E-05 7.2E-10 77.2 7.0 43 19-61 66-108 (680)
275 PRK06567 putative bifunctional 97.8 2.1E-05 4.5E-10 85.9 5.4 39 19-57 382-420 (1028)
276 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 2.3E-05 5E-10 79.0 4.9 37 21-57 1-37 (433)
277 COG3573 Predicted oxidoreducta 97.8 2.6E-05 5.7E-10 73.1 4.8 41 19-59 4-46 (552)
278 PRK06912 acoL dihydrolipoamide 97.8 2.5E-05 5.5E-10 81.5 5.2 57 270-329 210-268 (458)
279 TIGR01317 GOGAT_sm_gam glutama 97.8 3.4E-05 7.3E-10 80.8 5.7 42 20-61 143-184 (485)
280 PF07992 Pyr_redox_2: Pyridine 97.7 2.9E-05 6.3E-10 71.3 4.5 32 22-53 1-32 (201)
281 COG1053 SdhA Succinate dehydro 97.7 3.7E-05 8E-10 80.8 5.2 43 17-59 3-45 (562)
282 TIGR03169 Nterm_to_SelD pyridi 97.7 0.00048 1E-08 69.7 12.9 53 271-329 191-243 (364)
283 PF00070 Pyr_redox: Pyridine n 97.7 5.7E-05 1.2E-09 57.6 4.7 35 22-56 1-35 (80)
284 PRK12770 putative glutamate sy 97.7 6.2E-05 1.3E-09 75.7 6.2 43 19-61 17-59 (352)
285 PRK12771 putative glutamate sy 97.7 5.9E-05 1.3E-09 80.8 5.7 42 19-60 136-177 (564)
286 KOG1238 Glucose dehydrogenase/ 97.6 0.0002 4.4E-09 74.1 9.1 39 17-55 54-93 (623)
287 TIGR03452 mycothione_red mycot 97.6 6.9E-05 1.5E-09 77.9 5.7 56 271-329 210-265 (452)
288 KOG2311 NAD/FAD-utilizing prot 97.6 0.0003 6.5E-09 69.4 9.0 40 18-57 26-66 (679)
289 PRK13984 putative oxidoreducta 97.6 9.8E-05 2.1E-09 79.9 5.8 42 19-60 282-323 (604)
290 PRK07846 mycothione reductase; 97.5 8E-05 1.7E-09 77.3 4.7 56 271-329 207-262 (451)
291 PRK08255 salicylyl-CoA 5-hydro 97.5 7.9E-05 1.7E-09 82.4 4.7 34 21-54 1-36 (765)
292 KOG0405 Pyridine nucleotide-di 97.5 0.00023 5.1E-09 67.4 6.4 50 18-67 18-67 (478)
293 KOG1800 Ferredoxin/adrenodoxin 97.4 0.00016 3.6E-09 69.3 4.9 43 19-61 19-63 (468)
294 KOG2960 Protein involved in th 97.3 5.7E-05 1.2E-09 66.2 0.2 41 20-60 76-118 (328)
295 PLN02785 Protein HOTHEAD 97.2 0.00036 7.7E-09 74.5 5.3 35 19-54 54-88 (587)
296 PF13434 K_oxygenase: L-lysine 97.1 0.0014 3E-08 65.1 8.1 34 20-53 2-36 (341)
297 TIGR02352 thiamin_ThiO glycine 97.1 0.0018 3.9E-08 64.7 8.6 68 265-336 128-198 (337)
298 KOG4716 Thioredoxin reductase 96.8 0.0011 2.3E-08 62.8 3.9 65 266-331 233-302 (503)
299 PRK14727 putative mercuric red 96.7 0.016 3.4E-07 60.9 12.1 32 21-52 189-220 (479)
300 PRK13748 putative mercuric red 96.7 0.015 3.2E-07 62.6 12.2 32 21-52 271-302 (561)
301 PRK14694 putative mercuric red 96.7 0.018 4E-07 60.3 12.5 32 21-52 179-210 (468)
302 COG4529 Uncharacterized protei 96.5 0.003 6.5E-08 63.5 4.9 40 20-59 1-43 (474)
303 KOG0404 Thioredoxin reductase 96.4 0.0065 1.4E-07 54.2 5.3 44 19-62 7-54 (322)
304 COG0446 HcaD Uncharacterized N 96.4 0.0037 8E-08 64.4 4.6 40 20-59 136-175 (415)
305 COG1206 Gid NAD(FAD)-utilizing 96.3 0.0038 8.2E-08 59.1 3.9 36 21-56 4-39 (439)
306 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0052 1.1E-07 53.7 4.0 32 22-53 1-32 (157)
307 PF07156 Prenylcys_lyase: Pren 96.2 0.038 8.1E-07 55.2 10.4 120 201-329 63-187 (368)
308 PF02737 3HCDH_N: 3-hydroxyacy 95.9 0.0092 2E-07 53.4 4.2 32 22-53 1-32 (180)
309 KOG3855 Monooxygenase involved 95.8 0.01 2.2E-07 58.1 4.2 35 19-53 35-73 (481)
310 TIGR03377 glycerol3P_GlpA glyc 95.8 0.026 5.7E-07 59.9 7.7 59 270-329 127-190 (516)
311 TIGR03862 flavo_PP4765 unchara 95.6 0.05 1.1E-06 54.5 8.5 61 265-329 79-141 (376)
312 PF03721 UDPG_MGDP_dh_N: UDP-g 95.5 0.015 3.2E-07 52.2 3.9 33 21-53 1-33 (185)
313 PRK02705 murD UDP-N-acetylmura 95.5 0.015 3.3E-07 60.8 4.5 34 22-55 2-35 (459)
314 COG3486 IucD Lysine/ornithine 95.4 0.14 2.9E-06 50.6 10.2 37 17-53 2-39 (436)
315 PRK07819 3-hydroxybutyryl-CoA 95.4 0.018 4E-07 55.7 4.3 33 21-53 6-38 (286)
316 PRK09754 phenylpropionate diox 95.3 0.018 4E-07 58.9 4.5 38 21-58 145-182 (396)
317 KOG3923 D-aspartate oxidase [A 95.3 0.016 3.6E-07 54.2 3.4 51 272-338 152-202 (342)
318 PRK07066 3-hydroxybutyryl-CoA 95.1 0.027 5.9E-07 55.1 4.7 33 21-53 8-40 (321)
319 PRK01438 murD UDP-N-acetylmura 95.1 0.026 5.5E-07 59.5 4.8 33 21-53 17-49 (480)
320 PRK07251 pyridine nucleotide-d 95.0 0.029 6.4E-07 58.3 4.9 35 21-55 158-192 (438)
321 PRK05976 dihydrolipoamide dehy 94.9 0.029 6.2E-07 58.9 4.6 34 21-54 181-214 (472)
322 PRK06129 3-hydroxyacyl-CoA deh 94.9 0.027 5.8E-07 55.4 4.1 32 22-53 4-35 (308)
323 COG3634 AhpF Alkyl hydroperoxi 94.8 0.017 3.7E-07 55.1 2.2 31 19-49 210-240 (520)
324 PRK04965 NADH:flavorubredoxin 94.7 0.039 8.4E-07 56.1 4.6 36 21-56 142-177 (377)
325 TIGR01350 lipoamide_DH dihydro 94.6 0.041 8.9E-07 57.6 4.9 36 21-56 171-206 (461)
326 PRK06249 2-dehydropantoate 2-r 94.6 0.047 1E-06 53.8 5.0 34 20-53 5-38 (313)
327 KOG3851 Sulfide:quinone oxidor 94.6 0.046 1E-06 51.7 4.5 48 6-53 21-74 (446)
328 PF02558 ApbA: Ketopantoate re 94.6 0.044 9.5E-07 47.5 4.2 31 23-53 1-31 (151)
329 TIGR02053 MerA mercuric reduct 94.5 0.044 9.5E-07 57.4 4.8 36 21-56 167-202 (463)
330 COG0569 TrkA K+ transport syst 94.4 0.046 9.9E-07 50.8 4.1 33 21-53 1-33 (225)
331 COG1249 Lpd Pyruvate/2-oxoglut 94.4 0.05 1.1E-06 56.0 4.7 36 21-56 174-209 (454)
332 TIGR01421 gluta_reduc_1 glutat 94.4 0.049 1.1E-06 56.7 4.8 36 21-56 167-202 (450)
333 PF00070 Pyr_redox: Pyridine n 94.3 0.12 2.6E-06 39.2 5.6 44 268-313 37-80 (80)
334 PRK06467 dihydrolipoamide dehy 94.3 0.052 1.1E-06 56.9 4.8 36 21-56 175-210 (471)
335 PRK07846 mycothione reductase; 94.3 0.053 1.1E-06 56.5 4.7 36 21-56 167-202 (451)
336 PRK06912 acoL dihydrolipoamide 94.3 0.055 1.2E-06 56.5 4.8 35 21-55 171-205 (458)
337 PRK09260 3-hydroxybutyryl-CoA 94.3 0.045 9.9E-07 53.2 3.9 32 22-53 3-34 (288)
338 PRK08293 3-hydroxybutyryl-CoA 94.2 0.049 1.1E-06 52.9 4.1 33 21-53 4-36 (287)
339 PRK06115 dihydrolipoamide dehy 94.2 0.058 1.3E-06 56.5 4.7 34 21-54 175-208 (466)
340 PRK06370 mercuric reductase; V 94.1 0.062 1.3E-06 56.3 4.9 36 21-56 172-207 (463)
341 PRK06416 dihydrolipoamide dehy 94.1 0.062 1.3E-06 56.3 4.7 36 21-56 173-208 (462)
342 PRK07818 dihydrolipoamide dehy 94.0 0.062 1.3E-06 56.3 4.7 35 21-55 173-207 (466)
343 TIGR01816 sdhA_forward succina 94.0 0.19 4.2E-06 53.9 8.4 59 270-329 118-181 (565)
344 PRK06292 dihydrolipoamide dehy 94.0 0.069 1.5E-06 55.9 5.0 36 21-56 170-205 (460)
345 PRK07530 3-hydroxybutyryl-CoA 94.0 0.074 1.6E-06 51.9 4.8 33 21-53 5-37 (292)
346 PRK13512 coenzyme A disulfide 94.0 0.06 1.3E-06 55.9 4.4 36 21-56 149-184 (438)
347 PF01262 AlaDh_PNT_C: Alanine 94.0 0.074 1.6E-06 47.0 4.3 35 19-53 19-53 (168)
348 TIGR03385 CoA_CoA_reduc CoA-di 93.9 0.069 1.5E-06 55.3 4.6 35 21-55 138-172 (427)
349 PRK05249 soluble pyridine nucl 93.9 0.069 1.5E-06 55.9 4.7 36 21-56 176-211 (461)
350 KOG2755 Oxidoreductase [Genera 93.8 0.041 8.9E-07 50.6 2.3 33 22-54 1-35 (334)
351 PRK14106 murD UDP-N-acetylmura 93.7 0.084 1.8E-06 55.1 5.0 34 20-53 5-38 (450)
352 KOG1336 Monodehydroascorbate/f 93.7 0.17 3.7E-06 51.0 6.7 65 271-336 255-319 (478)
353 PRK06327 dihydrolipoamide dehy 93.7 0.077 1.7E-06 55.7 4.7 36 21-56 184-219 (475)
354 TIGR03452 mycothione_red mycot 93.7 0.083 1.8E-06 55.0 4.8 36 21-56 170-205 (452)
355 PRK05708 2-dehydropantoate 2-r 93.7 0.091 2E-06 51.5 4.8 33 20-52 2-34 (305)
356 PRK06035 3-hydroxyacyl-CoA deh 93.5 0.076 1.6E-06 51.8 3.9 33 21-53 4-36 (291)
357 PRK08229 2-dehydropantoate 2-r 93.5 0.09 2E-06 52.6 4.5 32 21-52 3-34 (341)
358 PRK04148 hypothetical protein; 93.4 0.08 1.7E-06 44.1 3.3 33 21-54 18-50 (134)
359 COG1004 Ugd Predicted UDP-gluc 93.3 0.095 2.1E-06 51.6 4.0 33 21-53 1-33 (414)
360 PRK06522 2-dehydropantoate 2-r 93.2 0.1 2.2E-06 51.3 4.3 31 22-52 2-32 (304)
361 PRK05808 3-hydroxybutyryl-CoA 93.1 0.095 2.1E-06 50.8 3.9 32 22-53 5-36 (282)
362 COG0686 Ald Alanine dehydrogen 93.1 0.091 2E-06 49.7 3.5 34 19-52 167-200 (371)
363 PLN02545 3-hydroxybutyryl-CoA 93.1 0.11 2.3E-06 50.8 4.3 32 22-53 6-37 (295)
364 TIGR02374 nitri_red_nirB nitri 93.1 0.1 2.2E-06 58.3 4.5 36 21-56 141-176 (785)
365 PRK12921 2-dehydropantoate 2-r 93.1 0.11 2.5E-06 50.9 4.4 30 22-51 2-31 (305)
366 PTZ00153 lipoamide dehydrogena 93.0 0.12 2.5E-06 56.1 4.7 36 21-56 313-348 (659)
367 TIGR01424 gluta_reduc_2 glutat 93.0 0.12 2.6E-06 53.8 4.7 35 21-55 167-201 (446)
368 PRK11064 wecC UDP-N-acetyl-D-m 93.0 0.11 2.3E-06 53.3 4.2 33 21-53 4-36 (415)
369 PRK04690 murD UDP-N-acetylmura 93.0 0.12 2.7E-06 54.0 4.7 34 21-54 9-42 (468)
370 PRK07845 flavoprotein disulfid 92.9 0.13 2.8E-06 53.8 4.9 37 21-57 178-214 (466)
371 PRK14619 NAD(P)H-dependent gly 92.9 0.14 3E-06 50.4 4.8 34 20-53 4-37 (308)
372 PTZ00058 glutathione reductase 92.9 0.12 2.5E-06 55.1 4.5 34 21-54 238-271 (561)
373 cd01080 NAD_bind_m-THF_DH_Cycl 92.9 0.15 3.4E-06 44.7 4.5 34 19-52 43-77 (168)
374 PRK06130 3-hydroxybutyryl-CoA 92.8 0.13 2.9E-06 50.6 4.6 33 21-53 5-37 (311)
375 TIGR03140 AhpF alkyl hydropero 92.8 0.11 2.5E-06 55.0 4.3 33 21-53 353-385 (515)
376 PRK09564 coenzyme A disulfide 92.8 0.13 2.8E-06 53.6 4.7 35 21-55 150-184 (444)
377 cd05292 LDH_2 A subgroup of L- 92.8 0.13 2.8E-06 50.4 4.4 32 22-53 2-35 (308)
378 TIGR01763 MalateDH_bact malate 92.7 0.15 3.3E-06 49.8 4.7 33 21-53 2-35 (305)
379 PLN02507 glutathione reductase 92.6 0.14 3.1E-06 53.9 4.6 35 21-55 204-238 (499)
380 PRK05675 sdhA succinate dehydr 92.6 0.44 9.6E-06 51.2 8.4 59 270-329 125-189 (570)
381 COG0771 MurD UDP-N-acetylmuram 92.6 0.16 3.4E-06 51.8 4.6 36 20-55 7-42 (448)
382 PRK14989 nitrite reductase sub 92.5 0.13 2.9E-06 57.5 4.5 36 21-56 146-181 (847)
383 PF03446 NAD_binding_2: NAD bi 92.5 0.16 3.6E-06 44.5 4.2 33 21-53 2-34 (163)
384 PRK06116 glutathione reductase 92.5 0.15 3.3E-06 53.1 4.7 35 21-55 168-202 (450)
385 PRK14618 NAD(P)H-dependent gly 92.4 0.18 3.9E-06 50.1 4.9 33 21-53 5-37 (328)
386 PRK08010 pyridine nucleotide-d 92.4 0.16 3.5E-06 52.8 4.7 35 21-55 159-193 (441)
387 TIGR03026 NDP-sugDHase nucleot 92.2 0.14 3.1E-06 52.5 4.0 33 22-54 2-34 (411)
388 TIGR01316 gltA glutamate synth 92.2 0.16 3.5E-06 52.8 4.4 33 21-53 273-305 (449)
389 TIGR02354 thiF_fam2 thiamine b 92.2 0.22 4.8E-06 45.3 4.7 34 19-52 20-54 (200)
390 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.1 0.15 3.2E-06 53.6 3.9 33 21-53 6-38 (503)
391 TIGR03143 AhpF_homolog putativ 92.1 0.15 3.3E-06 54.5 4.2 35 21-55 144-178 (555)
392 PRK10262 thioredoxin reductase 92.1 0.17 3.8E-06 50.1 4.3 33 21-53 147-179 (321)
393 TIGR01470 cysG_Nterm siroheme 92.1 0.24 5.1E-06 45.3 4.8 33 21-53 10-42 (205)
394 PF01488 Shikimate_DH: Shikima 92.0 0.28 6.1E-06 41.5 4.9 34 19-52 11-45 (135)
395 PRK15317 alkyl hydroperoxide r 91.9 0.18 3.8E-06 53.6 4.3 33 21-53 352-384 (517)
396 PLN02546 glutathione reductase 91.8 0.19 4.2E-06 53.5 4.5 36 21-56 253-288 (558)
397 PRK08268 3-hydroxy-acyl-CoA de 91.8 0.2 4.4E-06 52.6 4.6 33 21-53 8-40 (507)
398 PRK00094 gpsA NAD(P)H-dependen 91.7 0.22 4.7E-06 49.5 4.5 32 22-53 3-34 (325)
399 PRK12831 putative oxidoreducta 91.7 0.2 4.3E-06 52.4 4.4 33 21-53 282-314 (464)
400 PRK14620 NAD(P)H-dependent gly 91.6 0.22 4.8E-06 49.4 4.4 32 22-53 2-33 (326)
401 KOG2304 3-hydroxyacyl-CoA dehy 91.5 0.25 5.3E-06 44.5 4.0 35 19-53 10-44 (298)
402 PRK07531 bifunctional 3-hydrox 91.5 0.22 4.9E-06 52.4 4.5 32 22-53 6-37 (495)
403 TIGR00518 alaDH alanine dehydr 91.4 0.25 5.5E-06 49.7 4.7 35 19-53 166-200 (370)
404 PRK12770 putative glutamate sy 91.4 0.23 5E-06 49.9 4.3 33 21-53 173-206 (352)
405 TIGR01438 TGR thioredoxin and 91.3 0.27 5.8E-06 51.7 4.9 32 21-52 181-212 (484)
406 TIGR01423 trypano_reduc trypan 91.3 0.24 5.2E-06 52.0 4.5 36 21-56 188-226 (486)
407 PF13241 NAD_binding_7: Putati 91.2 0.16 3.4E-06 40.7 2.4 34 19-52 6-39 (103)
408 PRK06718 precorrin-2 dehydroge 91.1 0.35 7.6E-06 44.1 4.8 33 20-52 10-42 (202)
409 PRK01710 murD UDP-N-acetylmura 91.0 0.26 5.6E-06 51.5 4.4 33 21-53 15-47 (458)
410 PTZ00052 thioredoxin reductase 90.9 0.3 6.5E-06 51.6 4.9 32 21-52 183-214 (499)
411 COG1250 FadB 3-hydroxyacyl-CoA 90.9 0.25 5.5E-06 47.7 3.9 32 21-52 4-35 (307)
412 COG1748 LYS9 Saccharopine dehy 90.9 0.31 6.6E-06 48.7 4.5 32 21-52 2-34 (389)
413 TIGR01292 TRX_reduct thioredox 90.8 0.27 5.9E-06 47.9 4.2 33 21-53 142-174 (300)
414 PRK11730 fadB multifunctional 90.7 0.23 5E-06 54.7 3.8 33 21-53 314-346 (715)
415 PRK07417 arogenate dehydrogena 90.7 0.28 6.2E-06 47.4 4.1 32 22-53 2-33 (279)
416 KOG0409 Predicted dehydrogenas 90.7 0.38 8.2E-06 45.5 4.7 52 2-53 15-68 (327)
417 PRK03369 murD UDP-N-acetylmura 90.6 0.39 8.5E-06 50.5 5.4 32 21-52 13-44 (488)
418 PRK15057 UDP-glucose 6-dehydro 90.6 0.3 6.5E-06 49.5 4.2 31 22-53 2-32 (388)
419 PRK09424 pntA NAD(P) transhydr 90.4 0.27 5.8E-06 51.3 3.8 34 20-53 165-198 (509)
420 PRK06719 precorrin-2 dehydroge 90.4 0.42 9.1E-06 41.6 4.5 32 19-50 12-43 (157)
421 PLN02353 probable UDP-glucose 90.3 0.3 6.6E-06 50.7 4.1 33 21-53 2-36 (473)
422 PRK04308 murD UDP-N-acetylmura 90.3 0.41 8.8E-06 49.8 5.2 34 21-54 6-39 (445)
423 TIGR02437 FadB fatty oxidation 90.3 0.3 6.5E-06 53.7 4.3 33 21-53 314-346 (714)
424 PRK02472 murD UDP-N-acetylmura 90.2 0.38 8.3E-06 50.1 4.9 33 21-53 6-38 (447)
425 TIGR01915 npdG NADPH-dependent 90.2 0.37 7.9E-06 44.7 4.2 31 22-52 2-33 (219)
426 TIGR01505 tartro_sem_red 2-hyd 90.1 0.32 7E-06 47.3 4.0 32 22-53 1-32 (291)
427 PF02254 TrkA_N: TrkA-N domain 89.9 0.49 1.1E-05 38.7 4.4 31 23-53 1-31 (116)
428 COG1893 ApbA Ketopantoate redu 89.9 0.39 8.4E-06 46.9 4.3 33 21-53 1-33 (307)
429 COG1251 NirB NAD(P)H-nitrite r 89.8 0.32 7E-06 51.7 3.8 54 274-329 190-243 (793)
430 PTZ00082 L-lactate dehydrogena 89.7 0.47 1E-05 46.7 4.8 34 21-54 7-41 (321)
431 TIGR02441 fa_ox_alpha_mit fatt 89.7 0.32 7E-06 53.6 3.9 33 21-53 336-368 (737)
432 cd01075 NAD_bind_Leu_Phe_Val_D 89.5 0.55 1.2E-05 42.8 4.7 33 21-53 29-61 (200)
433 COG3634 AhpF Alkyl hydroperoxi 89.4 0.32 6.9E-06 46.8 3.1 34 19-52 353-386 (520)
434 PRK06223 malate dehydrogenase; 89.3 0.5 1.1E-05 46.4 4.6 33 21-53 3-36 (307)
435 PRK11749 dihydropyrimidine deh 89.2 0.45 9.8E-06 49.7 4.5 33 21-53 274-307 (457)
436 PRK00066 ldh L-lactate dehydro 89.2 0.6 1.3E-05 45.9 5.0 35 19-53 5-41 (315)
437 KOG1346 Programmed cell death 89.1 0.45 9.7E-06 46.9 3.9 61 274-337 396-456 (659)
438 cd05191 NAD_bind_amino_acid_DH 89.0 0.76 1.6E-05 35.3 4.5 32 20-51 23-55 (86)
439 PTZ00318 NADH dehydrogenase-li 89.0 0.49 1.1E-05 48.9 4.5 35 22-56 175-223 (424)
440 cd05291 HicDH_like L-2-hydroxy 89.0 0.49 1.1E-05 46.4 4.3 32 22-53 2-35 (306)
441 PRK00141 murD UDP-N-acetylmura 89.0 0.59 1.3E-05 49.0 5.1 32 21-52 16-47 (473)
442 COG2084 MmsB 3-hydroxyisobutyr 88.8 0.55 1.2E-05 44.9 4.2 33 22-54 2-34 (286)
443 TIGR02440 FadJ fatty oxidation 88.6 0.42 9.1E-06 52.6 3.9 33 21-53 305-338 (699)
444 TIGR03385 CoA_CoA_reduc CoA-di 88.6 1.3 2.9E-05 45.7 7.5 55 271-329 179-233 (427)
445 KOG1335 Dihydrolipoamide dehyd 88.6 0.24 5.2E-06 48.3 1.7 39 21-59 212-250 (506)
446 PRK07688 thiamine/molybdopteri 88.6 0.64 1.4E-05 46.2 4.8 35 19-53 23-58 (339)
447 cd05311 NAD_bind_2_malic_enz N 88.6 0.64 1.4E-05 43.2 4.5 34 20-53 25-61 (226)
448 PRK08306 dipicolinate synthase 88.5 0.62 1.4E-05 45.3 4.6 34 20-53 152-185 (296)
449 cd00401 AdoHcyase S-adenosyl-L 88.5 0.53 1.1E-05 47.8 4.2 34 20-53 202-235 (413)
450 PRK00421 murC UDP-N-acetylmura 88.5 0.5 1.1E-05 49.4 4.2 34 21-54 8-42 (461)
451 PRK15116 sulfur acceptor prote 88.5 0.71 1.5E-05 43.9 4.8 35 19-53 29-64 (268)
452 PRK12549 shikimate 5-dehydroge 88.4 0.66 1.4E-05 44.8 4.7 33 21-53 128-161 (284)
453 PRK11154 fadJ multifunctional 88.4 0.42 9.1E-06 52.7 3.7 33 21-53 310-343 (708)
454 PF00056 Ldh_1_N: lactate/mala 88.3 0.76 1.7E-05 39.2 4.5 33 21-53 1-36 (141)
455 PF00899 ThiF: ThiF family; I 88.3 0.49 1.1E-05 40.0 3.3 34 20-53 2-36 (135)
456 PRK12778 putative bifunctional 88.3 0.55 1.2E-05 52.4 4.6 33 21-53 571-604 (752)
457 PRK15461 NADH-dependent gamma- 88.2 0.55 1.2E-05 45.8 4.1 32 22-53 3-34 (296)
458 PRK11559 garR tartronate semia 88.1 0.62 1.4E-05 45.5 4.4 33 21-53 3-35 (296)
459 PRK11199 tyrA bifunctional cho 88.1 0.74 1.6E-05 46.5 4.9 34 20-53 98-132 (374)
460 PRK12475 thiamine/molybdopteri 88.0 0.73 1.6E-05 45.7 4.8 35 19-53 23-58 (338)
461 TIGR00561 pntA NAD(P) transhyd 87.8 0.55 1.2E-05 48.9 3.9 34 20-53 164-197 (511)
462 PRK02006 murD UDP-N-acetylmura 87.8 0.64 1.4E-05 49.1 4.5 33 21-53 8-40 (498)
463 cd01487 E1_ThiF_like E1_ThiF_l 87.7 0.88 1.9E-05 40.4 4.6 32 22-53 1-33 (174)
464 PTZ00117 malate dehydrogenase; 87.6 0.78 1.7E-05 45.2 4.7 35 19-53 4-39 (319)
465 cd01339 LDH-like_MDH L-lactate 87.6 0.61 1.3E-05 45.6 4.0 31 23-53 1-32 (300)
466 PLN00016 RNA-binding protein; 87.6 0.66 1.4E-05 47.1 4.4 37 17-53 49-90 (378)
467 PRK01368 murD UDP-N-acetylmura 87.6 0.61 1.3E-05 48.5 4.1 31 21-52 7-37 (454)
468 PLN02602 lactate dehydrogenase 87.5 0.95 2.1E-05 45.0 5.2 33 21-53 38-72 (350)
469 cd05293 LDH_1 A subgroup of L- 87.4 0.87 1.9E-05 44.6 4.8 34 20-53 3-38 (312)
470 COG1252 Ndh NADH dehydrogenase 87.4 0.42 9.1E-06 48.1 2.7 35 21-55 156-203 (405)
471 PRK03803 murD UDP-N-acetylmura 87.2 0.69 1.5E-05 48.2 4.3 32 22-53 8-39 (448)
472 PF13478 XdhC_C: XdhC Rossmann 87.1 0.68 1.5E-05 39.1 3.4 31 23-53 1-31 (136)
473 PRK00683 murD UDP-N-acetylmura 87.1 0.76 1.6E-05 47.4 4.5 33 21-53 4-36 (418)
474 PRK07502 cyclohexadienyl dehyd 87.0 0.79 1.7E-05 45.0 4.4 33 21-53 7-41 (307)
475 PTZ00142 6-phosphogluconate de 86.9 0.7 1.5E-05 48.0 4.0 34 21-54 2-35 (470)
476 TIGR00872 gnd_rel 6-phosphoglu 86.6 0.82 1.8E-05 44.7 4.2 32 22-53 2-33 (298)
477 PRK08644 thiamine biosynthesis 86.6 1.1 2.4E-05 41.1 4.9 34 19-52 27-61 (212)
478 cd01078 NAD_bind_H4MPT_DH NADP 86.6 1 2.3E-05 40.7 4.6 33 20-52 28-61 (194)
479 PF03807 F420_oxidored: NADP o 86.5 1 2.2E-05 35.2 4.0 32 22-53 1-36 (96)
480 TIGR02356 adenyl_thiF thiazole 86.5 1.2 2.5E-05 40.7 4.9 34 19-52 20-54 (202)
481 TIGR02853 spore_dpaA dipicolin 86.4 0.87 1.9E-05 44.1 4.2 33 21-53 152-184 (287)
482 PRK01390 murD UDP-N-acetylmura 86.4 0.8 1.7E-05 47.9 4.3 32 21-52 10-41 (460)
483 PLN02695 GDP-D-mannose-3',5'-e 86.4 1.1 2.4E-05 45.2 5.3 38 16-53 17-55 (370)
484 cd01065 NAD_bind_Shikimate_DH 86.1 1.2 2.6E-05 38.5 4.6 34 20-53 19-53 (155)
485 PRK03806 murD UDP-N-acetylmura 85.9 1.1 2.4E-05 46.6 5.0 33 21-53 7-39 (438)
486 cd01483 E1_enzyme_family Super 85.8 1.3 2.8E-05 37.8 4.6 32 22-53 1-33 (143)
487 COG2085 Predicted dinucleotide 85.8 1 2.2E-05 40.6 3.9 31 21-51 2-32 (211)
488 TIGR00507 aroE shikimate 5-deh 85.8 1.1 2.4E-05 43.1 4.5 33 20-52 117-149 (270)
489 PRK09496 trkA potassium transp 85.6 0.87 1.9E-05 47.6 4.1 32 22-53 2-33 (453)
490 TIGR03376 glycerol3P_DH glycer 85.5 1.1 2.3E-05 44.6 4.3 31 22-52 1-39 (342)
491 PRK09599 6-phosphogluconate de 85.3 1.1 2.3E-05 44.0 4.3 32 22-53 2-33 (301)
492 PRK14573 bifunctional D-alanyl 85.3 0.95 2.1E-05 51.0 4.5 33 21-53 5-38 (809)
493 PLN02256 arogenate dehydrogena 85.3 1.2 2.7E-05 43.4 4.6 35 19-53 35-69 (304)
494 PLN02172 flavin-containing mon 85.2 0.95 2.1E-05 47.2 4.1 34 20-53 204-237 (461)
495 PRK12548 shikimate 5-dehydroge 85.1 1.4 2.9E-05 42.9 4.9 32 21-52 127-159 (289)
496 PF10727 Rossmann-like: Rossma 85.1 0.69 1.5E-05 38.4 2.4 36 17-52 7-42 (127)
497 TIGR00936 ahcY adenosylhomocys 85.0 1 2.3E-05 45.5 4.1 34 20-53 195-228 (406)
498 cd05290 LDH_3 A subgroup of L- 85.0 1.2 2.7E-05 43.4 4.5 32 22-53 1-34 (307)
499 TIGR02355 moeB molybdopterin s 84.8 1.4 3.1E-05 41.4 4.7 35 19-53 23-58 (240)
500 PRK12779 putative bifunctional 84.7 1 2.2E-05 51.2 4.3 33 21-53 448-480 (944)
No 1
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.3e-69 Score=508.83 Aligned_cols=544 Identities=53% Similarity=0.819 Sum_probs=452.6
Q ss_pred CcccccccCccccccccCCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhh
Q 038727 1 MWRRSFSNGVSLTRTLKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLL 80 (565)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~ 80 (565)
+|+|+++..+- ...||++|||+|+.||+||++|++.|.+|+|+|++.+.||.+.+....+||.|+++.+++...
T Consensus 1 ~~rR~fS~~~~------~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~slL 74 (561)
T KOG4254|consen 1 SGRRSFSSLSA------KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLLSLL 74 (561)
T ss_pred CccccccccCC------CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHHHhh
Confidence 58888876653 356999999999999999999999999999999999999999888889999999999999999
Q ss_pred hhhHhhhccccccCceeecCCCceeeecCCC---cEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhc
Q 038727 81 RPSVIRELELKKHGLKLLKPIATSFTPCLDG---LYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLD 157 (565)
Q Consensus 81 ~~~~~~~l~l~~~g~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (565)
.|...+++.+.++|+.+-...+..+....++ +...+..+......++.+|+..++..++++.+.+.++...+.++++
T Consensus 75 rp~~~~~~~l~r~gl~l~~r~p~sft~~~~~~lp~~lllg~dm~~n~~~i~kfs~~da~~~peye~fl~~~~~~~~pl~d 154 (561)
T KOG4254|consen 75 RPRGPQELELKRHGLRLHERSPCSFTPSLMGYLPEGLLLGRDMAENQKEIAKFSQPDARAYPEYEKFLVELYGAIDPLLD 154 (561)
T ss_pred cccccccchHhhhhhhhccCCCccccchhhccchhhhhhccccccchhhhhhhcCCccccchhHHHHHHHHHhccchhhh
Confidence 9988888888888888877777665554444 4556666666667778889888888999999999988888888776
Q ss_pred CCCCCCcCCCchhhhhhhhhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHHHhccCC
Q 038727 158 SPPPEALHGDLSFHDLLRDKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADAITGSMA 237 (565)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~ 237 (565)
..+..... +.......+.++..+-.-+..........+..+......+..+.+.++|..+.++..+...+.++...
T Consensus 155 ~~~~~~~~----~~~~~l~~~~~~~~~~~pl~l~~~i~~~~~~~~~~~~~ap~~k~~~~~fesk~~ka~l~tDavi~~~a 230 (561)
T KOG4254|consen 155 AAPADPPL----FIHGLLLVLYTLASTYAPLLLAGFIKMKPLGALYELLLAPISKVLNDWFESKDLKATLATDAVIGLLA 230 (561)
T ss_pred ccccccch----hhhhhhHHHHHHHHHhhhHHHhhHhhcCcHHHHHHHHhcchhhHHhhhhhccchhhhhhHHHHHHhhc
Confidence 65522111 11111111111111111111122234456667888888888999999999888888877777777778
Q ss_pred CCCCChhHHHHHHHHhccccCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEe
Q 038727 238 SIHAPGSGYVLLHHVMGETDGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVH 317 (565)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ 317 (565)
++.++...+.++++.++..+...|.|.||.||++.++.++++.+++.|++|.+++.|++|..++ |+++||+++||++++
T Consensus 231 sv~~pgt~yvllh~vlg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~dG~ev~ 309 (561)
T KOG4254|consen 231 SVHTPGTGYVLLHHVLGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLADGTEVR 309 (561)
T ss_pred ccCCCCcHHHHHHHHHHhhcccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecCCcEEE
Confidence 8999999999999999888889999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCEEEECCChHHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHH
Q 038727 318 SSFVLSNATPYKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEE 397 (565)
Q Consensus 318 ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (565)
++.||+|++++.|+.+|++++.+|.++ .++++.+...+.+ ++.|.|.+++.....+.|+|...++...+.+..
T Consensus 310 sk~VvSNAt~~~Tf~kLlp~e~LPeef--~i~q~d~~spv~k-----~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~ 382 (561)
T KOG4254|consen 310 SKIVVSNATPWDTFEKLLPGEALPEEF--VIQQLDTVSPVTK-----DKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQA 382 (561)
T ss_pred eeeeecCCchHHHHHHhCCCccCCchh--hhhhccccccccc-----ccCcceeecCCCCCCCCCccceeEEecCchHHH
Confidence 999999999999999999999999887 6777766555544 444556555555422336777789988877777
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCC-CChhHHHHHHHHHHHHHHHhCCCC
Q 038727 398 IGSACQDAWNGLPSRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSW-EDPTYRESYAQKCFSLIDEYAPGF 476 (565)
Q Consensus 398 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~~l~~~~P~~ 476 (565)
.-.++.+.++|.....|.+++++||..||+++|+|+++|.+++++.|+.+.++.| +|+++|++.++++++.+++++|+|
T Consensus 383 ~H~~v~D~~~gl~s~~pvI~~siPS~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgf 462 (561)
T KOG4254|consen 383 HHRAVEDPRNGLASHRPVIELSIPSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGF 462 (561)
T ss_pred HHHHHhChhhcccccCCeEEEecccccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCc
Confidence 7777777788888889999999999999999999999999999888876555566 788999999999999999999999
Q ss_pred CCcEeEEEeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCCCCccCcchHHHHHHH
Q 038727 477 SSSVIGYDLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPGGGVMGAPGRNAAHVV 556 (565)
Q Consensus 477 ~~~i~~~~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g~g~~~asg~~aa~~i 556 (565)
+++++..++.||.|.+++++.++|++|+.++..+|..+.||.+.+.+++|||||||+||+++|||+|++++.|+++|+..
T Consensus 463 sssv~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV~a~aG~~~A~~a 542 (561)
T KOG4254|consen 463 SSSVESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGVMAAAGRLAAHSA 542 (561)
T ss_pred cceEEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCCCccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999888888999999999999999999999999999999998
Q ss_pred HHHhhh
Q 038727 557 LQDFKK 562 (565)
Q Consensus 557 ~~~~~~ 562 (565)
+.+...
T Consensus 543 ~~~~~~ 548 (561)
T KOG4254|consen 543 ILDRKL 548 (561)
T ss_pred hhhhhh
Confidence 876543
No 2
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=1.8e-60 Score=500.95 Aligned_cols=483 Identities=23% Similarity=0.338 Sum_probs=375.2
Q ss_pred EEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhh--hhhHhhhccc--cccCceee
Q 038727 23 ALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLL--RPSVIRELEL--KKHGLKLL 98 (565)
Q Consensus 23 ViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~--~~~~~~~l~l--~~~g~~~~ 98 (565)
|||||||++||+||.+|+++|++|+||||++++||+++++. .+||.||.|++++... ..++++++|+ .+. +++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~l~~~lg~~l~~~-l~~~ 78 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMPEALEELFALAGRDLADY-VELV 78 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccccHHHHHHHHcCCChhhe-EEEE
Confidence 69999999999999999999999999999999999999987 6899999999875432 2256677764 343 7888
Q ss_pred cCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHH-HHHHhhcCCCCCCcCCCchhhhhhhhh
Q 038727 99 KPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCK-IMDFLLDSPPPEALHGDLSFHDLLRDK 177 (565)
Q Consensus 99 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (565)
+.++.+.+.+.+|+.+.++.+.+...+++.++++.+.+.+.++.+.++.... ....++..+... +..
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----- 146 (502)
T TIGR02734 79 PLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLS-------PRD----- 146 (502)
T ss_pred ECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-------HHH-----
Confidence 8777777777788888999998888899998888888888888888777665 233333222111 000
Q ss_pred hhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHH-HhccCCCCCCChhHHHHHHHHhccc
Q 038727 178 MQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADA-ITGSMASIHAPGSGYVLLHHVMGET 256 (565)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 256 (565)
++.... ...+......++.+++++++.++.++.++.... +++. .+....+.+.++.+.
T Consensus 147 -----~~~~~~----------~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~--~p~~~~~~~~l~~~~---- 205 (502)
T TIGR02734 147 -----LLRADL----------PQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGG--NPFRTPSIYALISAL---- 205 (502)
T ss_pred -----HHhHhh----------HhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeecc--CcccchHHHHHHHHH----
Confidence 000000 001122346888999999999999999887543 3442 455555444444332
Q ss_pred cCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 257 DGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 257 ~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
....+.| ++.||++.++++|.+.++++|++|+++++|++|..++ +++++|++.+|+++.||+||+|+++..+...|++
T Consensus 206 ~~~~g~~-~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~ 283 (502)
T TIGR02734 206 EREWGVW-FPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVHLADGERLDADAVVSNADLHHTYRRLLP 283 (502)
T ss_pred HhhceEE-EcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcC
Confidence 2345666 8999999999999999999999999999999999888 8888899999988999999999999888777877
Q ss_pred CCCCCHHHHHHHhhcCCCCceEEEEEecCCCC-ccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCe
Q 038727 337 RDVLPDDFLRAIKYSDYHSGVTKINVAVDKLP-QFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPV 415 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 415 (565)
.+..++.+.+.+++..++++.++++++++..+ .+. . ..+| ++++..+....+...+ ..|.+++.|+
T Consensus 284 ~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~-------~-~~~~--~~~~~~~~~~~~~~~~---~~g~~~~~p~ 350 (502)
T TIGR02734 284 NHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWP-------Q-LAHH--TLCFGPRYKELFDEIF---RKGRLAEDPS 350 (502)
T ss_pred ccccccccccccccCCcCCeeeEEEEeeccccCcCC-------C-cCce--eEecCcCHHHHHHHHh---cCCCCCCCCc
Confidence 65555556677788888899999999999643 221 1 1223 6776444322233222 3466788999
Q ss_pred EEEEcCCCCCCCCCCCCccEEEEEcccccCC-CCCCCCCChhHHHHHHHHHHHHHHHh-CCCCCCcEeEEEeCChhhHHH
Q 038727 416 MEMTIPSSLDKTISPPGKHVVSLFTQYTPYK-PSDGSWEDPTYRESYAQKCFSLIDEY-APGFSSSVIGYDLLTPPDLER 493 (565)
Q Consensus 416 ~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~~~-~P~~~~~i~~~~~~tp~t~~~ 493 (565)
+++++|+..||+++|+|++++++++. .|+. .....|. +.|+++.+++++.|+++ +|+++++|+..++.||.||++
T Consensus 351 ~~v~~~s~~dp~~aP~G~~~~~~~~~-~~~~~~~~~~~~--~~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~ 427 (502)
T TIGR02734 351 LYLHRPTVTDPSLAPPGCENLYVLAP-VPHLGTADVDWS--VEGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRD 427 (502)
T ss_pred EEEEcCCCCCCCCCCCCCccEEEEEe-CCCCCCCCCCcH--HHHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHH
Confidence 99999999999999999999888764 4543 2223454 46899999999999998 999999999999999999999
Q ss_pred HcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCCCCccCc--chHHHHHHHHHHhhh
Q 038727 494 EFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPGGGVMGA--PGRNAAHVVLQDFKK 562 (565)
Q Consensus 494 ~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g~g~~~a--sg~~aa~~i~~~~~~ 562 (565)
|++.++|++||..+.+.|...+||. ..+|+++|||+||+|+|||+|++++ ||++||++|+++++.
T Consensus 428 ~~~~~~G~~~G~~~~~~q~~~~rp~----~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 428 RYNAWLGSAFSLEHTLTQSAWFRPH----NRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred hcCCCCccccchhhchhhcccCCCC----CCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999888888778883 4579999999999999999999997 999999999998754
No 3
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=2.5e-56 Score=466.83 Aligned_cols=483 Identities=21% Similarity=0.276 Sum_probs=351.4
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhh----hhhHh-hhccccccCc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLL----RPSVI-RELELKKHGL 95 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~----~~~~~-~~l~l~~~g~ 95 (565)
+||||||||++||+||.+|+++|++|+||||++.+||++.++. ++||.||.|++.+... .+.++ +.++.....+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL 79 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence 6999999999999999999999999999999999999999987 7999999999875321 23322 2232111125
Q ss_pred eeecCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhhh
Q 038727 96 KLLKPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLR 175 (565)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (565)
++...++.....+++|..+.++.|.+...+++.+++|.+...+.++.+.+......+..+........ .
T Consensus 80 ~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---- 148 (493)
T TIGR02730 80 ETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEP-------R---- 148 (493)
T ss_pred cccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccCh-------H----
Confidence 55544444555667787888889999999999998898888899988887766654432210000000 0
Q ss_pred hhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHHHhccCCCCCCChhHHHHHHHHhcc
Q 038727 176 DKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADAITGSMASIHAPGSGYVLLHHVMGE 255 (565)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 255 (565)
.+.... ... ......+..+...++.+++++++.++.+++++....++.+..++...+..+....+..
T Consensus 149 -------~~~~~~---~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~-- 215 (493)
T TIGR02730 149 -------YLFRVF---FKH-PLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSD-- 215 (493)
T ss_pred -------HHHHHH---hhc-hhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcc--
Confidence 000000 000 0011123344568999999999999999999886544333222223322222222111
Q ss_pred ccCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcC
Q 038727 256 TDGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 256 ~~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~ 335 (565)
....+.| ++.||++.++++|.+.++++|++|+++++|++|..++ +++.+|++.+|+++.||+||+|++++.++.+|+
T Consensus 216 -~~~~g~~-~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 216 -RHYGGIN-YPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred -cccceEe-cCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 1223455 9999999999999999999999999999999999988 899999999998899999999999999887899
Q ss_pred CCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCe
Q 038727 336 PRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPV 415 (565)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 415 (565)
+.+.+++.+...+++++++.+.++++++++....- .....| .+++ .+ .+. .....++
T Consensus 293 ~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p--------~~~~~~--~~~~-~~-~~~-----------~~~~~~~ 349 (493)
T TIGR02730 293 KAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLP--------PGTECH--HILL-ED-WTN-----------LEKPQGT 349 (493)
T ss_pred CccccchhhHHHHhhccCCCceEEEEEEecCccCC--------CCCCcc--EEec-ch-hhc-----------cCCCCCe
Confidence 87777777777778888888999999999974210 000112 3333 21 111 1134689
Q ss_pred EEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCC--CCCChhHHHHHHHHHHHHHHHhCCCCCCcEeEEEeCChhhHHH
Q 038727 416 MEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDG--SWEDPTYRESYAQKCFSLIDEYAPGFSSSVIGYDLLTPPDLER 493 (565)
Q Consensus 416 ~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~--~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~t~~~ 493 (565)
+++++|+..||+++|+|+++++++++ .+...|.+ .-++++.|+++.+++++.|++++|+++++|+..++.||.|+++
T Consensus 350 ~~v~~ps~~dps~aP~G~~~i~~~~~-~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r 428 (493)
T TIGR02730 350 IFVSIPTLLDPSLAPEGHHIIHTFTP-SSMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRR 428 (493)
T ss_pred EEEEeCCCCCCCCCcCCcEEEEEecC-CChhhccCCCcHHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHH
Confidence 99999999999999999999887753 22211111 1123567999999999999999999999999999999999999
Q ss_pred HcCCCCCccccccCCccccccCC-CCCCCCCCCCCCCCeEEcCCCCCCCCCccCc--chHHHHHHHHHHhh
Q 038727 494 EFGLTGGNIFHGAMGLDSLFLMR-PVKGWSGYRTPVRGLYLCGSGSHPGGGVMGA--PGRNAAHVVLQDFK 561 (565)
Q Consensus 494 ~~~~~~G~~~g~~~~~~~~~~~r-p~~~~~~~~t~i~~lylaG~~~~~g~g~~~a--sg~~aa~~i~~~~~ 561 (565)
|++.++|+ ||......+....+ | ..+|+++||||||+|++||+|++++ ||++||++|+++++
T Consensus 429 ~~~~~~G~-~G~~~~~~~~~~~~~~-----~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 429 FLGRDSGT-YGPIPRRTLPGLLPMP-----FNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADLG 493 (493)
T ss_pred HhCCCCcc-cCCcccccccccccCC-----CCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 99999998 66544332332223 3 4689999999999999999999996 99999999999864
No 4
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=6.7e-56 Score=464.72 Aligned_cols=471 Identities=21% Similarity=0.260 Sum_probs=341.4
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhh-----hhhHhhhccccccCc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLL-----RPSVIRELELKKHGL 95 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~-----~~~~~~~l~l~~~g~ 95 (565)
.||||||||++||+||..|+++|++|+|||+++++||++.++. ++||.||.|++++... .+.++++||+...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~-- 78 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEPGGIHARIFRELGIPLP-- 78 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCcCCHHHHHHHHcCCCCc--
Confidence 5899999999999999999999999999999999999999987 6999999999886432 2368888876522
Q ss_pred eeecCCCceeeecCCC-cEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhh
Q 038727 96 KLLKPIATSFTPCLDG-LYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLL 174 (565)
Q Consensus 96 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (565)
++...++...+.+.+| ..+.++.|.+...+++.+.++.+.. ++..+.+..+.....+...+..... .+.+ +
T Consensus 79 ~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~ 150 (492)
T TIGR02733 79 EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER----FWQLCSQLHQSNWRFAGRDPVLPPR---NYWD-L 150 (492)
T ss_pred ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH----HHHHHHHHHHHHHHHhhcCCCCCCC---CHHH-H
Confidence 1344566666677777 5677789998888888876666533 3333333333322222211100000 0000 0
Q ss_pred hhhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcc--cCChHHHHHHHHHHHhccCCCCCCChhHHHHHHHH
Q 038727 175 RDKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKW--FESDVLKATVAADAITGSMASIHAPGSGYVLLHHV 252 (565)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 252 (565)
. ..+. ...... .....+...++.++++++ +.++.++.++..........+++.+...+......
T Consensus 151 ~----------~~~~---~~~~~~-~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (492)
T TIGR02733 151 L----------QLVS---ALRPDT-LLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQ 216 (492)
T ss_pred H----------HHHH---hcChhh-hhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhh
Confidence 0 0000 000000 012223568889999886 88999999998654322223444554444332211
Q ss_pred hccccCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC-----cEEecCEEEECCCh
Q 038727 253 MGETDGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG-----TRVHSSFVLSNATP 327 (565)
Q Consensus 253 ~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G-----~~~~ad~VI~a~~~ 327 (565)
. .....|.| +++||++.|+++|++.++++|++|+++++|++|..++ +++.+|++.+| +++.||+||+|+++
T Consensus 217 ~--~~~~~G~~-~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 217 M--AQAPHGLW-HLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred c--cccCCCce-eecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 1 12335677 8999999999999999999999999999999999998 88778887665 57899999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCC-ccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhh
Q 038727 328 YKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLP-QFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAW 406 (565)
Q Consensus 328 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (565)
..+ .+|++++.+++++.+.+++++++++++++++++++.. .+. . ..+ .... +
T Consensus 293 ~~~-~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~--------~-~~~--~~~~-----------~---- 345 (492)
T TIGR02733 293 QSL-LELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVD--------C-PPH--LQFL-----------S---- 345 (492)
T ss_pred HHH-HHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCC--------C-Ccc--eeec-----------c----
Confidence 886 6788776788888888999999888999999998732 221 0 112 1111 0
Q ss_pred cCCCCCCCeEEEEcCCCCCCCCCCCCccEEEEEc--ccccCCCC-CCCCCChhHHHHHHHHHHHHHHHhCCCCCCcEeEE
Q 038727 407 NGLPSRRPVMEMTIPSSLDKTISPPGKHVVSLFT--QYTPYKPS-DGSWEDPTYRESYAQKCFSLIDEYAPGFSSSVIGY 483 (565)
Q Consensus 407 ~g~~~~~~~~~~~~~~~~d~~~~p~G~~~v~~~~--~~~~~~~~-~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~ 483 (565)
.....++++.++ .||+++|+|++++++.+ ++.+|... ..+| .+.|+++.+++++.|++++|+++++|+..
T Consensus 346 ----~~~~~~~v~~~~-~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y--~~~k~~~~~~il~~le~~~p~l~~~i~~~ 418 (492)
T TIGR02733 346 ----DHQGSLFVSISQ-EGDGRAPQGEATLIASSFTDTNDWSSLDEEDY--TAKKKQYTQTIIERLGHYFDLLEENWVHV 418 (492)
T ss_pred ----CCCceEEEEeCC-ccccCCCCCceEEEEEcCCCHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHCCCccccEEEE
Confidence 012367887765 47899999999886653 33444311 1123 45789999999999999999999999999
Q ss_pred EeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCCCCccCc--chHHHHHHHHHH
Q 038727 484 DLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPGGGVMGA--PGRNAAHVVLQD 559 (565)
Q Consensus 484 ~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g~g~~~a--sg~~aa~~i~~~ 559 (565)
++.||.||+++++.++|++||+.+.+.|+...++ ..+|+++||||||+|+|||+|++|+ ||++||+.|+++
T Consensus 419 ~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~-----~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 419 ELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGL-----SSRTPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred EccCCchHHHHhCCCCcEECCCCcCccccCCcCC-----CCCCCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999988888655554 4589999999999999999999998 999999999875
No 5
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.5e-54 Score=447.13 Aligned_cols=480 Identities=33% Similarity=0.498 Sum_probs=365.8
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhhh-hHhhhcc-ccccCce
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRP-SVIRELE-LKKHGLK 96 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~~-~~~~~l~-l~~~g~~ 96 (565)
+.+||||||||++||+||.+|+++|++|+||||+.++||++++++ ..||.||+|++++.+... .++++++ ++..++.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~~~~~~~~l~~l~~~~l~ 80 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDPGPLFRELGNLDADGLD 80 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCchHHHHHHhccCccccee
Confidence 458999999999999999999999999999999999999999988 559999999976555443 6889999 8888899
Q ss_pred eecCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhhhh
Q 038727 97 LLKPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLRD 176 (565)
Q Consensus 97 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (565)
+...++.+...+.+|..+....|.+.....+..+.+.+...+.++.....+..+.+...+-........
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 149 (487)
T COG1233 81 LLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELL----------- 149 (487)
T ss_pred eeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhh-----------
Confidence 988888888888889999999999999999998888888888888876555444443322111111000
Q ss_pred hhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHHHhccCCCCCCChhHHHHHHHHhccc
Q 038727 177 KMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADAITGSMASIHAPGSGYVLLHHVMGET 256 (565)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 256 (565)
........+..+..+...+..+++..+|.++.+++.+.....++. .++..+.+.+.++++.
T Consensus 150 --------------~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~~~~~---- 210 (487)
T COG1233 150 --------------LVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPPALYLLLSHL---- 210 (487)
T ss_pred --------------hccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchhHHHHHHHHh----
Confidence 001112233455556778888888888999999999987655554 5666666444444433
Q ss_pred cCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 257 DGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 257 ~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
....|.+ +|+||++.|+++|++.++++|++|+++++|++|..++ ++.+++++.+|+.+.+|.||+++.+ .+...+.+
T Consensus 211 ~~~~G~~-~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~g~~~~ad~vv~~~~~-~~~~~l~~ 287 (487)
T COG1233 211 GLSGGVF-YPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSDGENIEADAVVSNADP-ALLARLLG 287 (487)
T ss_pred cccCCee-eeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccccceeccceeEecCch-hhhhhhhh
Confidence 4455666 9999999999999999999999999999999999999 8877788888877999999999998 33344443
Q ss_pred CCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeE
Q 038727 337 RDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVM 416 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 416 (565)
.. .. .+......+..+++..+++++.. . +...+. ..++..++.+.+.+.+.+ ..|+.+ ++
T Consensus 288 ~~--~~--~~~~~~~~~~~~al~~~~g~~~~--~---------~~~~~~-~~~~~~~~~~~~~~~~~~-~~g~~~---~~ 347 (487)
T COG1233 288 EA--RR--PRYRGSYLKSLSALSLYLGLKGD--L---------LPLAHH-TTILLGDTREQIEEAFDD-RAGRPP---PL 347 (487)
T ss_pred hh--hh--hccccchhhhhHHHHhccCCCCC--C---------cchhhc-ceEecCCcHHHHHHHhhh-hcCCCC---ce
Confidence 31 11 12222333344555555555542 0 011122 334447888899988877 666655 88
Q ss_pred EEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCCcEeEEEeCChhhHHHHcC
Q 038727 417 EMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFSSSVIGYDLLTPPDLEREFG 496 (565)
Q Consensus 417 ~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~t~~~~~~ 496 (565)
++++|+..||+++|+|++. ++.++.++. .. ..+++.|+++.+. +..++++.|+++++|+...+.||.+++++.+
T Consensus 348 ~v~~ps~~Dps~AP~G~~~--~~~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~p~~~~~iv~~~~~tp~~~e~~~~ 421 (487)
T COG1233 348 YVSIPSLTDPSLAPEGKHS--TFAQLVPVP-SL--GDYDELKESLADA-IDALEELAPGLRDRIVAREVLTPLDLERYLG 421 (487)
T ss_pred EEeCCCCCCCccCCCCCcc--eeeeeeecC-cC--CChHHHHHHHHHH-HHHHhhcCCCcccceeEEEEeChHHHHHhcC
Confidence 9999999999999999982 222233332 11 2233578888888 8899999999999999999999999999999
Q ss_pred CCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCCCCccCcchHHHHHHHHHHhhh
Q 038727 497 LTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPGGGVMGAPGRNAAHVVLQDFKK 562 (565)
Q Consensus 497 ~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g~g~~~asg~~aa~~i~~~~~~ 562 (565)
.++|+++|+.+.++|....||. ..+|||+|||+||+++|||+|++++.|..+|..++.+++.
T Consensus 422 ~~~G~~~~~~~~~~q~~~~rp~----~~~t~i~~LYl~Ga~t~PG~Gv~g~~g~~~a~~~~~~~~~ 483 (487)
T COG1233 422 LPGGDIFGGAHTLDQLGPFRPP----PKSTPIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDLDR 483 (487)
T ss_pred CCCCcccchhcChhhhcCCCCC----CCCCCcCceEEeCCcCCCCCCcchhhhhHHHHHhhhcccc
Confidence 9999999999999999999984 2379999999999999999999999777777777665543
No 6
>PLN02612 phytoene desaturase
Probab=100.00 E-value=6.4e-33 Score=292.16 Aligned_cols=441 Identities=17% Similarity=0.216 Sum_probs=256.9
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhhh---hHhhhccccccCc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRP---SVIRELELKKHGL 95 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~~---~~~~~l~l~~~g~ 95 (565)
+..||+|||||++||+||++|+++|++|+|+|+++++||++.++...+|+.+|.|.+++....+ +++++||+.+. +
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~-~ 170 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR-L 170 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc-c
Confidence 4578999999999999999999999999999999999999998764579999999987665555 57788887654 4
Q ss_pred eeecCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhhh
Q 038727 96 KLLKPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLR 175 (565)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (565)
.+.+....+.....++....+.. .. . .+.. +. ... .++..... .++.++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~-p~----~----~P~~---l~-------~~~----~~l~~~~~------ls~~~kl~ 221 (567)
T PLN02612 171 QWKEHSMIFAMPNKPGEFSRFDF-PE----V----LPAP---LN-------GIW----AILRNNEM------LTWPEKIK 221 (567)
T ss_pred eecccceEEEecCCCCceeeCcC-ch----h----cCCh---hh-------hhH----HHHhcCcc------CCHHHHHH
Confidence 44322111111111111111000 00 0 0000 00 000 00000000 00111110
Q ss_pred hhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHH-HHHHHHHhccCCCCCCChhHHHHH--HHH
Q 038727 176 DKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKA-TVAADAITGSMASIHAPGSGYVLL--HHV 252 (565)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~-~~~~~~~~g~~~~~~~~~~~~~~~--~~~ 252 (565)
... ........ .......+...++.+++++...++.+.. ++......-....++..+....+. ...
T Consensus 222 ~~~-------~~~~~~~~----~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~ 290 (567)
T PLN02612 222 FAI-------GLLPAIVG----GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF 290 (567)
T ss_pred HHH-------hhhHHhcc----cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH
Confidence 000 00000000 0001112345788888888766665443 333221000011233322222221 111
Q ss_pred hccccCCCccccccCCch-HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHH
Q 038727 253 MGETDGDRNLWSHVEGGM-GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTF 331 (565)
Q Consensus 253 ~~~~~~~~g~~~~~~gG~-~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~ 331 (565)
+.. .......++.|+. ..++++|.+.++++|++|++|++|++|..++++.+++|++.+|+++.||+||+|+++.. +
T Consensus 291 l~~--~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~-l 367 (567)
T PLN02612 291 LQE--KHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDI-L 367 (567)
T ss_pred Hhc--cCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHH-H
Confidence 111 1111223566665 67999999999999999999999999998642656778888898899999999998765 5
Q ss_pred hhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCC
Q 038727 332 MGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPS 411 (565)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 411 (565)
..|+++...+..+.+.++++.+ .+++++++.++++. +. . ..+ .++. ..
T Consensus 368 ~~Ll~~~~~~~~~~~~l~~l~~-~~v~~v~l~~dr~~-~~-------~--~~~--~~~~-~~------------------ 415 (567)
T PLN02612 368 KLLLPDQWKEIPYFKKLDKLVG-VPVINVHIWFDRKL-KN-------T--YDH--LLFS-RS------------------ 415 (567)
T ss_pred HHhCcchhcCcHHHHHHHhcCC-CCeEEEEEEECccc-CC-------C--CCc--eeec-CC------------------
Confidence 7788764444466777777765 58999999999863 21 0 111 3321 11
Q ss_pred CCCeEEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCC------Cc-EeEEE
Q 038727 412 RRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFS------SS-VIGYD 484 (565)
Q Consensus 412 ~~~~~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~------~~-i~~~~ 484 (565)
....++...++.. +..+++|+.++.+.. .+.. .|... .++++.+.+++.|+++||+.. .. +.+..
T Consensus 416 ~~~~~~~d~S~~~-~~~~~~~~~ll~~~~--~~a~----~~~~~-sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~ 487 (567)
T PLN02612 416 PLLSVYADMSTTC-KEYYDPNKSMLELVF--APAE----EWISR-SDEDIIDATMKELAKLFPDEISADQSKAKILKYHV 487 (567)
T ss_pred CCceeehhhhhcc-hhhcCCCCeEEEEEE--EcCh----hhhcC-CHHHHHHHHHHHHHHHCCcccccccCCceEEEEEE
Confidence 0112222222222 334566666554432 2211 34332 579999999999999999762 22 33356
Q ss_pred eCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCC--CCccCc--chHHHHHHHHHHh
Q 038727 485 LLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPG--GGVMGA--PGRNAAHVVLQDF 560 (565)
Q Consensus 485 ~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g--~g~~~a--sg~~aa~~i~~~~ 560 (565)
+.+|.++-.+ .+++. ..|| ..+||++||||||||+.++ +++.|| ||++||++|++++
T Consensus 488 v~~P~a~~~~--~pg~~------------~~rp-----~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~ 548 (567)
T PLN02612 488 VKTPRSVYKT--VPNCE------------PCRP-----LQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDY 548 (567)
T ss_pred eccCCceEEe--CCCCc------------ccCc-----cccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 6677775221 11111 1366 5689999999999999654 477887 9999999999987
Q ss_pred hh
Q 038727 561 KK 562 (565)
Q Consensus 561 ~~ 562 (565)
+.
T Consensus 549 ~~ 550 (567)
T PLN02612 549 EL 550 (567)
T ss_pred cc
Confidence 54
No 7
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=283.56 Aligned_cols=420 Identities=23% Similarity=0.304 Sum_probs=250.2
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhhh---hHhhhccccccCceee
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRP---SVIRELELKKHGLKLL 98 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~~---~~~~~l~l~~~g~~~~ 98 (565)
+|+|||||++||+||+.|+++|++|+|||+++++||++.++. .+|+.||.|.+++....+ ++++++|+... +.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~-~~~~ 78 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDELGLEDK-LRWR 78 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHcCCCCc-eeec
Confidence 699999999999999999999999999999999999998876 679999999887644333 57778877543 3332
Q ss_pred cCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhhhhhh
Q 038727 99 KPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLRDKM 178 (565)
Q Consensus 99 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (565)
... ....+ ++....+ .+. ..+..+..... .+.+......+. . .. ..
T Consensus 79 ~~~--~~~~~-~~~~~~~-~~~----~~~~~~~~~~~------~~~~~~~~~~~~-~-~~-~~----------------- 124 (434)
T PRK07233 79 ETK--TGYYV-DGKLYPL-GTP----LELLRFPHLSL------IDKFRLGLLTLL-A-RR-IK----------------- 124 (434)
T ss_pred cCc--eEEEE-CCeEecC-CCH----HHHHcCCCCCH------HHHHHhHHHHHh-h-hh-cc-----------------
Confidence 211 11111 2322111 111 11111111000 000000000000 0 00 00
Q ss_pred hhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHH--HhccCCCCCCChhHHHHHHHHh-cc
Q 038727 179 QKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADA--ITGSMASIHAPGSGYVLLHHVM-GE 255 (565)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~-~~ 255 (565)
....+...++.+++.+.+.++..+.++.... .++ ..++..+....+..... ..
T Consensus 125 ----------------------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~~~~~~ 180 (434)
T PRK07233 125 ----------------------DWRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFG--DYADDVSAAWLWSRIKRRGN 180 (434)
T ss_pred ----------------------cccccccccHHHHHHHhcCHHHHHHHHHHHHhcccC--CCccccCHHHHHHHHhhhhc
Confidence 0001123556666666665554455544332 222 23343333221111110 00
Q ss_pred c--cCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhh
Q 038727 256 T--DGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMG 333 (565)
Q Consensus 256 ~--~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~ 333 (565)
. ......+.+++||++.++++|.+.+++.|++|+++++|++|..++ ++++.+. .+++++.||+||+|+++..+ ..
T Consensus 181 ~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~-~~~~~~~-~~~~~~~ad~vI~a~p~~~~-~~ 257 (434)
T PRK07233 181 RRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDG-GGVTGVE-VDGEEEDFDAVISTAPPPIL-AR 257 (434)
T ss_pred cccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcC-CceEEEE-eCCceEECCEEEECCCHHHH-Hh
Confidence 0 000112458999999999999999999999999999999999887 7776554 56667999999999998875 67
Q ss_pred cCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCC
Q 038727 334 LVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRR 413 (565)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 413 (565)
+++. +++...+.++++.+ .+.+++++.++++. . +.+ ++.... ++.
T Consensus 258 ll~~--~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~-----------~~~--~~~~~~------------------~~~ 302 (434)
T PRK07233 258 LVPD--LPADVLARLRRIDY-QGVVCMVLKLRRPL-T-----------DYY--WLNIND------------------PGA 302 (434)
T ss_pred hcCC--CcHHHHhhhcccCc-cceEEEEEEecCCC-C-----------CCc--eeeecC------------------CCC
Confidence 8754 66667778888876 58889999998753 1 111 222211 112
Q ss_pred CeEEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCC-cEeEEEeCChhhHH
Q 038727 414 PVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFSS-SVIGYDLLTPPDLE 492 (565)
Q Consensus 414 ~~~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~-~i~~~~~~tp~t~~ 492 (565)
+...+..+++.+|..+|+|++++++.. +.+.. ...|. ..++++.+++++.|++++|+++. .++...+.. |.
T Consensus 303 ~~~~~~~~s~~~~~~~~~g~~~~~~~~-~~~~~--~~~~~--~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r---~~ 374 (434)
T PRK07233 303 PFGGVIEHTNLVPPERYGGEHLVYLPK-YLPGD--HPLWQ--MSDEELLDRFLSYLRKMFPDFDRDDVRAVRISR---AP 374 (434)
T ss_pred CcceEEEecccCCccccCCceEEEEee-ecCCC--Chhhc--CCHHHHHHHHHHHHHHhCCCCChhheeeEEEEE---ec
Confidence 333344456677777777877654432 12211 11122 25789999999999999998853 344444321 11
Q ss_pred HHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCC--CCCCccCc--chHHHHHHHHHHhhh
Q 038727 493 REFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSH--PGGGVMGA--PGRNAAHVVLQDFKK 562 (565)
Q Consensus 493 ~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~--~g~g~~~a--sg~~aa~~i~~~~~~ 562 (565)
+ .. .+|. +. ....+| ..+++++|||+||++.. ++.++.+| ||+.||++|++.+++
T Consensus 375 -~-a~---~~~~----~g-~~~~~~-----~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~~ 433 (434)
T PRK07233 375 -Y-AQ---PIYE----PG-YLDKIP-----PYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRRN 433 (434)
T ss_pred -c-cc---cccc----Cc-hhhcCC-----CcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhcC
Confidence 1 01 1111 10 011244 45678999999999642 34578887 999999999998864
No 8
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.9e-30 Score=257.83 Aligned_cols=416 Identities=18% Similarity=0.204 Sum_probs=250.4
Q ss_pred CEEEEcCChhHHHHHHHHHHCC--CcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhh---hhHhhhccccccCce
Q 038727 22 DALVIGGGHNGLIAAAYLARGG--LSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLR---PSVIRELELKKHGLK 96 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~---~~~~~~l~l~~~g~~ 96 (565)
+|+|||||++||+||++|++++ .+|+|||+.+++||.+.|+. .+||.||.|++.+-... .+++++||+++. +.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~-l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDK-LL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHh-hc
Confidence 6999999999999999999999 99999999999999999986 88999999997654432 368889988765 33
Q ss_pred eecCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhhhh
Q 038727 97 LLKPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLRD 176 (565)
Q Consensus 97 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (565)
+- ......++.+|+...++... +..+...... . .......+..+........ .
T Consensus 80 ~~--~~~~~~i~~~gkl~p~P~~~------i~~ip~~~~~---~----~~~~~~~~~~~~~~~~~~~-~----------- 132 (444)
T COG1232 80 WN--STARKYIYYDGKLHPIPTPT------ILGIPLLLLS---S----EAGLARALQEFIRPKSWEP-K----------- 132 (444)
T ss_pred cC--CcccceEeeCCcEEECCccc------eeecCCcccc---c----hhHHHHHHHhhhcccCCCC-C-----------
Confidence 22 11122344577777766542 1111111110 0 0011111111111100000 0
Q ss_pred hhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHH--HhccCCCCCCChhHH--------
Q 038727 177 KMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADA--ITGSMASIHAPGSGY-------- 246 (565)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~g~~~~~~~~~~~~-------- 246 (565)
...++.+|+++.|.++.+..++.+.. .+++ ..+..+...
T Consensus 133 -----------------------------~d~sv~~f~r~~fG~ev~~~~~~pll~giy~~--~~~~LS~~~~~p~~~~~ 181 (444)
T COG1232 133 -----------------------------QDISVGEFIRRRFGEEVVERFIEPLLEGIYAG--DADKLSAAAAFPILARA 181 (444)
T ss_pred -----------------------------CCcCHHHHHHHHHhHHHHHHHHHHHhhchhcC--CHHHhhHHHhcchhhhh
Confidence 11222233333333332222222110 0110 000000000
Q ss_pred -----HH----HHHHhccccCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEe
Q 038727 247 -----VL----LHHVMGETDGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVH 317 (565)
Q Consensus 247 -----~~----~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ 317 (565)
++ ............+.+++++||++++++++++.++.. |+++++|++|..+. .... +++.+|.++.
T Consensus 182 e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~-~~~~-~~~~~g~~~~ 256 (444)
T COG1232 182 ERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKG-AGKT-IVDVGGEKIT 256 (444)
T ss_pred hhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcC-CccE-EEEcCCceEE
Confidence 00 000000001112356789999999999999998765 99999999999986 5444 6778888899
Q ss_pred cCEEEECCChHHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHH
Q 038727 318 SSFVLSNATPYKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEE 397 (565)
Q Consensus 318 ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (565)
||.||+|++++. +..++++ ....+.++++.+ .+++++.+++++..... .+ +...+.+..+
T Consensus 257 ~D~VI~t~p~~~-l~~ll~~----~~~~~~~~~~~~-~s~~~vv~~~~~~~~~~---------~~-~~~g~~iad~---- 316 (444)
T COG1232 257 ADGVISTAPLPE-LARLLGD----EAVSKAAKELQY-TSVVTVVVGLDEKDNPA---------LP-DGYGLLIADD---- 316 (444)
T ss_pred cceEEEcCCHHH-HHHHcCC----cchhhhhhhccc-cceEEEEEEeccccccC---------CC-CceEEEEecC----
Confidence 999999999988 4789877 223456677777 58888999998752110 12 2224444221
Q ss_pred HHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCC
Q 038727 398 IGSACQDAWNGLPSRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFS 477 (565)
Q Consensus 398 ~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~ 477 (565)
......++.+|+.-|...|+|++++++... .+.. .+......||+.+.+++.|.++++...
T Consensus 317 --------------~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~-~~g~----~~~~~~~dee~~~~~l~~L~~~~~~~~ 377 (444)
T COG1232 317 --------------DPYILAITFHSNKWPHEAPEGKTLLRVEFG-GPGD----ESVSTMSDEELVAAVLDDLKKLGGING 377 (444)
T ss_pred --------------CCcceeEEEecccCCCCCCCCcEEEEEEee-cCCC----cchhccCHHHHHHHHHHHHHHHcCcCc
Confidence 111557888999999999999999988743 2221 233334579999999999999997665
Q ss_pred CcEeEEEeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCCCCccCc--chHHHHHH
Q 038727 478 SSVIGYDLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPGGGVMGA--PGRNAAHV 555 (565)
Q Consensus 478 ~~i~~~~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g~g~~~a--sg~~aa~~ 555 (565)
+.. ...+. .|. .+.|...+.+.. ... ..|. ...+-.+|++++|.|- .|.|++.| +|..||++
T Consensus 378 ~~~-~~~v~---r~~--~~~PqY~vG~~~-~~~---~ir~-----~l~~~y~gi~~~G~~~-~g~g~~d~I~~g~~aa~~ 441 (444)
T COG1232 378 DPV-FVEVT---RWK--YAMPQYEVGHLD-RLE---PIRA-----ALKGAYPGIKSVGRYG-EGVGLPDCIAAGKEAAEQ 441 (444)
T ss_pred chh-heeee---ecc--ccCCccchhHHH-HHH---HHHH-----hhccccCCeEEeccCC-CCCCchHHHHHHHHHHHH
Confidence 544 33332 121 244444332221 111 1232 2333458999999998 44789987 89999998
Q ss_pred HH
Q 038727 556 VL 557 (565)
Q Consensus 556 i~ 557 (565)
++
T Consensus 442 l~ 443 (444)
T COG1232 442 LL 443 (444)
T ss_pred hh
Confidence 76
No 9
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.97 E-value=5.6e-30 Score=267.25 Aligned_cols=422 Identities=16% Similarity=0.187 Sum_probs=234.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCC--CcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhhh---hHhhhccccccCc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGG--LSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRP---SVIRELELKKHGL 95 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~~---~~~~~l~l~~~g~ 95 (565)
.+|+|||||++||+||+.|+++| ++|+|||+++++||+++|.. .+|+.+|.|++.+....+ +++++||+... +
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~-~ 78 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDE-L 78 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCccc-e
Confidence 36999999999999999999988 89999999999999999986 679999999976544333 57777776532 1
Q ss_pred eeecCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhh--HHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhh
Q 038727 96 KLLKPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTY--PRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDL 173 (565)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (565)
.... .... ..+.+|....++.+. +..+. .....+ .........+.... .. .... ...
T Consensus 79 ~~~~-~~~~-~~~~~g~~~~~p~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-~~~--------- 137 (451)
T PRK11883 79 VANT-TGQS-YIYVNGKLHPIPPGT------VMGIP-TSIAPFLFAGLVSPIGKLRAAA-DL-RPPR-WKP--------- 137 (451)
T ss_pred ecCC-CCcc-eEEECCeEEECCCCC------eeccC-CCchhhhcCCCCCHHHHHHhhC-cc-cCCC-CCC---------
Confidence 1111 1111 122244443332210 00000 000000 00000000000000 00 0000 000
Q ss_pred hhhhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHH--HhccCCCCCCChhHHHH---
Q 038727 174 LRDKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADA--ITGSMASIHAPGSGYVL--- 248 (565)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~g~~~~~~~~~~~~~~--- 248 (565)
....++.+++.+.+.+...+.++.... .++. .++..+....+
T Consensus 138 -------------------------------~~~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~~ 184 (451)
T PRK11883 138 -------------------------------GQDQSVGAFFRRRFGDEVVENLIEPLLSGIYAG--DIDTLSLRATFPQL 184 (451)
T ss_pred -------------------------------CCCcCHHHHHHHhccHHHHHHHHHHhhceeecC--ChHHccHHHhHHHH
Confidence 012344444444433333333332210 1111 11111111110
Q ss_pred H----------HHHhccc-c---CCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCc
Q 038727 249 L----------HHVMGET-D---GDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGT 314 (565)
Q Consensus 249 ~----------~~~~~~~-~---~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~ 314 (565)
. ....... . .....|.+++||++.++++|++.+.+. +|+++++|++|..++ +++. |.+.+|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~-~~~~-v~~~~g~ 260 (451)
T PRK11883 185 AQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSG-DGYE-IVLSNGG 260 (451)
T ss_pred HHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcC-CeEE-EEECCCC
Confidence 0 0000000 0 112345578999999999998877543 899999999999887 6654 7788888
Q ss_pred EEecCEEEECCChHHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCC
Q 038727 315 RVHSSFVLSNATPYKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCES 394 (565)
Q Consensus 315 ~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (565)
++.||+||+|+|+..+ ..++.+ +...+.++++.+. ++.++++.++++..+. +... .+++..+
T Consensus 261 ~~~~d~vI~a~p~~~~-~~l~~~----~~~~~~~~~~~~~-~~~~v~l~~~~~~~~~----------~~~~-~~~~~~~- 322 (451)
T PRK11883 261 EIEADAVIVAVPHPVL-PSLFVA----PPAFALFKTIPST-SVATVALAFPESATNL----------PDGT-GFLVARN- 322 (451)
T ss_pred EEEcCEEEECCCHHHH-HHhccC----hhHHHHHhCCCCC-ceEEEEEEeccccCCC----------CCce-EEEecCC-
Confidence 8999999999999885 677543 3456778888884 7889999998752110 1111 3333221
Q ss_pred HHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCC
Q 038727 395 MEEIGSACQDAWNGLPSRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAP 474 (565)
Q Consensus 395 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P 474 (565)
...+...+.++++.+|..+|+|..++.++.. .+.. .+.....++++.+.+++.|+++++
T Consensus 323 ----------------~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~L~~~~g 381 (451)
T PRK11883 323 ----------------SDYTITACTWTSKKWPHTTPEGKVLLRLYVG-RPGD----EAVVDATDEELVAFVLADLSKVMG 381 (451)
T ss_pred ----------------CCCcEEEEEeEcCcCCCCCCCCcEEEEEecC-CCCC----chhccCCHHHHHHHHHHHHHHHhC
Confidence 1123344556666777788888876665532 2211 111112568999999999999974
Q ss_pred CCCCcEeEEEeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCCCCccCc--chHHH
Q 038727 475 GFSSSVIGYDLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPGGGVMGA--PGRNA 552 (565)
Q Consensus 475 ~~~~~i~~~~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g~g~~~a--sg~~a 552 (565)
+..+.+...+. +|..- .+ .|+... ..+....++ .... ++|||+||+|+. |.|+++| ||+.|
T Consensus 382 -~~~~~~~~~~~---rw~~a--~p---~~~~~~-~~~~~~l~~-----~l~~-~~~l~~aG~~~~-g~~i~~av~sg~~~ 444 (451)
T PRK11883 382 -ITGDPEFTIVQ---RWKEA--MP---QYGVGH-IERVAELRA-----GLPH-YPGLYVAGASFE-GVGLPDCIAQAKRA 444 (451)
T ss_pred -CCCCceEEEEe---ecCcc--CC---CCCccH-HHHHHHHHH-----hhhh-CCCEEEECcccC-CccHHHHHHHHHHH
Confidence 33344433332 23321 11 111111 011111122 1222 679999999986 6789987 99999
Q ss_pred HHHHHH
Q 038727 553 AHVVLQ 558 (565)
Q Consensus 553 a~~i~~ 558 (565)
|++|+.
T Consensus 445 a~~i~~ 450 (451)
T PRK11883 445 AARLLA 450 (451)
T ss_pred HHHHHh
Confidence 999986
No 10
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.97 E-value=1e-29 Score=265.71 Aligned_cols=243 Identities=16% Similarity=0.187 Sum_probs=161.5
Q ss_pred ccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCCCCCCH
Q 038727 263 WSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPRDVLPD 342 (565)
Q Consensus 263 ~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~~~~~~ 342 (565)
+..+.||+++|+++|++.+.. ++|+++++|++|..++ ++++ |++.+|+++.||+||+|+|+..+ ..|+++ +++
T Consensus 217 ~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~~-v~~~~g~~~~ad~VI~t~P~~~~-~~ll~~--~~~ 289 (462)
T TIGR00562 217 FQTLATGLETLPEEIEKRLKL--TKVYKGTKVTKLSHRG-SNYT-LELDNGVTVETDSVVVTAPHKAA-AGLLSE--LSN 289 (462)
T ss_pred eEecchhHHHHHHHHHHHhcc--CeEEcCCeEEEEEecC-CcEE-EEECCCcEEEcCEEEECCCHHHH-HHHhcc--cCH
Confidence 447899999999999888752 7899999999999887 7665 78888888999999999999885 788865 677
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCC
Q 038727 343 DFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEMTIPS 422 (565)
Q Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 422 (565)
...+.++++.| .++.++.+.++++. +. .. +.. ..++.+.. ...+.+.+.+.+
T Consensus 290 ~~~~~l~~l~~-~~~~~v~l~~~~~~-~~-------~~-~~~--~g~l~~~~----------------~~~~~~~~i~~s 341 (462)
T TIGR00562 290 SASSHLDKIHS-PPVANVNLGFPEGS-VD-------GE-LEG--FGFLISRS----------------SKFAILGCIFTS 341 (462)
T ss_pred HHHHHHhcCCC-CceEEEEEEEchHH-cC-------CC-CCc--eEEEccCC----------------CCCceEEEEEEc
Confidence 88889999998 48999999987642 21 00 111 33332110 011334455566
Q ss_pred CCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCCcEeEEEeCChhhHHHHcCCCCCcc
Q 038727 423 SLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFSSSVIGYDLLTPPDLEREFGLTGGNI 502 (565)
Q Consensus 423 ~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~t~~~~~~~~~G~~ 502 (565)
+..|..+|+|+.++++++... .. ..+.. ..++++.+.+++.|.++++ +...++...+. .|.. ..|...+
T Consensus 342 ~~~p~~~p~g~~~l~~~~~g~-~~---~~~~~-~~~ee~~~~v~~~L~~~~g-i~~~p~~~~v~---rw~~--a~P~~~~ 410 (462)
T TIGR00562 342 KLFPNRAPPGKTLLTAYIGGA-TD---ESIVD-LSENEIINIVLRDLKKVLN-INNEPEMLCVT---RWHR--AIPQYHV 410 (462)
T ss_pred cccCCcCCCCcEEEEEEeCCC-CC---ccccC-CCHHHHHHHHHHHHHHHhC-CCCCCcEEEEe---Eccc--cCCCCCC
Confidence 667778888888777764321 11 11111 2568999999999999985 45434444432 2331 2222222
Q ss_pred ccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCCCCccCc--chHHHHHHHHHHhh
Q 038727 503 FHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPGGGVMGA--PGRNAAHVVLQDFK 561 (565)
Q Consensus 503 ~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g~g~~~a--sg~~aa~~i~~~~~ 561 (565)
.+. ..+.+ .++ ....+.+|||+||+|.. |.|+++| +|+.||+++++.+.
T Consensus 411 g~~-~~~~~---i~~-----~l~~~~~~l~l~G~~~~-g~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 411 GHD-QRLKE---ARE-----LLESAYPGVFLTGNSFE-GVGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred ChH-HHHHH---HHH-----HHHhhCCCEEEeccccC-CCcHHHHHHHHHHHHHHHHHhhc
Confidence 110 00110 111 11234579999999974 6789887 99999999998764
No 11
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.97 E-value=3e-29 Score=260.81 Aligned_cols=430 Identities=17% Similarity=0.208 Sum_probs=234.2
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhhh---hHhhhccccccCceee
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRP---SVIRELELKKHGLKLL 98 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~~---~~~~~l~l~~~g~~~~ 98 (565)
+|+|||||++||+||++|+++|++|+|||+++++||++.+....+|+.+|.|.+++....+ +++++||+.+. +.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~-~~~~ 79 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR-LQWK 79 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc-eeec
Confidence 5999999999999999999999999999999999999988754578999999987655445 46677776543 3332
Q ss_pred cCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhhhhhh
Q 038727 99 KPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLRDKM 178 (565)
Q Consensus 99 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (565)
.....+.....++....+... ... ..+... .. ++..... .++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~---------~~~----~~~~~~-------~~----~~~~~~~------~~~~~~~~--- 126 (453)
T TIGR02731 80 SHSMIFNQPDKPGTFSRFDFP---------DIP----APFNGV-------AA----ILRNNDM------LTWPEKIK--- 126 (453)
T ss_pred CCceEEecCCCCcceeeccCC---------CCC----CCHHHH-------HH----HhcCcCC------CCHHHHHH---
Confidence 211111100111111111100 000 000000 00 0000000 00001000
Q ss_pred hhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHH-HHHHH--HHhccCCCCCCChhHHHHHHHHhcc
Q 038727 179 QKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKA-TVAAD--AITGSMASIHAPGSGYVLLHHVMGE 255 (565)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~-~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~ 255 (565)
+.......... .......+...++.+++++....+.+.. ++... .+++ ..+...+..+.+ ......
T Consensus 127 ----~~~~~~~~~~~----~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~--~~p~~~S~~~~~-~~l~~~ 195 (453)
T TIGR02731 127 ----FAIGLLPAIVR----GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNF--INPDELSMTVVL-TALNRF 195 (453)
T ss_pred ----HHHHhHHHHhc----CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHH-HHHHHH
Confidence 00000000000 0001122345788888887666666444 33322 1122 123322222221 111100
Q ss_pred ccCCCcc-ccccCCc-hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCc-----EEecCEEEECCChH
Q 038727 256 TDGDRNL-WSHVEGG-MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGT-----RVHSSFVLSNATPY 328 (565)
Q Consensus 256 ~~~~~g~-~~~~~gG-~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~-----~~~ad~VI~a~~~~ 328 (565)
.....+. ..+..|+ ++.++++|.+.+++.|++|++|++|++|..++++++++|++.+|+ ++.||.||+|+++.
T Consensus 196 ~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 196 LQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD 275 (453)
T ss_pred HhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence 0001111 1134444 578999999999999999999999999986542668889887665 79999999999987
Q ss_pred HHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcC
Q 038727 329 KTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNG 408 (565)
Q Consensus 329 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 408 (565)
. +.+|++...-...+.+.++++.+ .+++++++.++++. +. +. ++++. .+.
T Consensus 276 ~-~~~lL~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~~~-~~----------~~--~~~~~-~~~-------------- 325 (453)
T TIGR02731 276 I-FKLLLPQPWKQMPFFQKLNGLEG-VPVINVHIWFDRKL-TT----------VD--HLLFS-RSP-------------- 325 (453)
T ss_pred H-HHhhCchhhhcCHHHHHhhcCCC-CcEEEEEEEEcccc-CC----------CC--ceeee-CCC--------------
Confidence 7 57888653212456677777775 58999999999853 10 11 12222 110
Q ss_pred CCCCCCeEEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCC------CcEeE
Q 038727 409 LPSRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFS------SSVIG 482 (565)
Q Consensus 409 ~~~~~~~~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~------~~i~~ 482 (565)
...+......... ..++++++++.+++. ... .|.. ..++++.+++++.|++++|... +-+.+
T Consensus 326 ----~~~~~~~~s~~~~-~~~~~~~~l~~~~~~--~~~----~~~~-~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~ 393 (453)
T TIGR02731 326 ----LLSVYADMSETCK-EYADPDKSMLELVFA--PAA----DWIG-RSDEEIIDATMAELAKLFPNHIKADSPAKILKY 393 (453)
T ss_pred ----cceeecchhhhCh-hhcCCCCeEEEEEec--Chh----hhhc-CCHHHHHHHHHHHHHHhCCcccCCCCCceEEEE
Confidence 0000001111111 223455565554421 111 1221 2579999999999999998521 12334
Q ss_pred EEeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCC--CCccCc--chHHHHHHHH
Q 038727 483 YDLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPG--GGVMGA--PGRNAAHVVL 557 (565)
Q Consensus 483 ~~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g--~g~~~a--sg~~aa~~i~ 557 (565)
.++..|.+. +. +.+.+ ...+| ..++|++||||||+++..+ +++.|| ||+.||++|+
T Consensus 394 ~~~~~p~a~--~~-----------~~pg~-~~~~~-----~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 394 KVVKTPRSV--YK-----------TTPGR-QQYRP-----HQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred EEEECCCce--ec-----------cCCCC-hhhCc-----cccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 444444431 11 11111 11244 5578899999999998332 267787 9999999874
No 12
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.97 E-value=3.4e-29 Score=259.16 Aligned_cols=452 Identities=15% Similarity=0.142 Sum_probs=237.6
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhhh---hHhhhccccccCceee
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRP---SVIRELELKKHGLKLL 98 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~~---~~~~~l~l~~~g~~~~ 98 (565)
+|+|||||++||+||+.|+++|++|+|+|+++++||+++++....|+.+|.|.+++....+ ++++++|+.+. +...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~-~~~~ 79 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDN-LLLK 79 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCccc-cccc
Confidence 5899999999999999999999999999999999999999754679999999988665555 45666766543 2221
Q ss_pred cCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhhhhhh
Q 038727 99 KPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLRDKM 178 (565)
Q Consensus 99 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (565)
. ........++....+... . + ....+.. +..++.... .++.++++-..
T Consensus 80 ~--~~~~~~~~~~~~~~~~~~----------~-~-~~~P~~~-----------~~~~l~~~~-------ls~~dklr~~~ 127 (474)
T TIGR02732 80 E--HTHTFVNKGGDIGELDFR----------F-A-TGAPFNG-----------LKAFFTTSQ-------LKWVDKLRNAL 127 (474)
T ss_pred c--ceeEEEcCCCcccccccC----------C-C-CCCchhh-----------hHHHhcCCC-------CCHHHHHHHHH
Confidence 1 111111111221110000 0 0 0000000 000000000 00111000000
Q ss_pred hhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChH-HHHHHHHHHHhcc-CCCCCCChhHHHHH-HHHhcc
Q 038727 179 QKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDV-LKATVAADAITGS-MASIHAPGSGYVLL-HHVMGE 255 (565)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~~g~-~~~~~~~~~~~~~~-~~~~~~ 255 (565)
.... +. .... +.........+......++.++++++..++. ++.++.... .+. ...++..++...+. .+.+..
T Consensus 128 ~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll-~~~~~~~~~~~Sa~~~~~~~~~~~~ 203 (474)
T TIGR02732 128 ALGT-SP-IVRG-LVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIA-YALGFIDCENISARCMLTIFMLFAA 203 (474)
T ss_pred Hhhh-hH-HHhh-ccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 0000 00 0000 0000000111222345888999999988875 555555432 221 12344433333222 112221
Q ss_pred ccCCCccccccCCchHH-HHHHHHHHHHHcCcEEEeCcceeEEEecCC--C--ceeEEEeCCC---cEEecCEEEECCCh
Q 038727 256 TDGDRNLWSHVEGGMGS-VSLAISKAATKAGAHILVNTEVSQIMIGDS--G--EVDGVLLVDG---TRVHSSFVLSNATP 327 (565)
Q Consensus 256 ~~~~~g~~~~~~gG~~~-l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~--~--~v~~V~~~~G---~~~~ad~VI~a~~~ 327 (565)
..... ...+++||... +.+.+.+.++++|++|+++++|++|..+++ + ++++|++.+| +++.||+||+|+++
T Consensus 204 ~~~~s-~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~ 282 (474)
T TIGR02732 204 KTEAS-KLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDV 282 (474)
T ss_pred CCCcc-eeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCCh
Confidence 11111 33477888766 677799999999999999999999987531 2 3777777654 46899999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCC-CCccccEEEeCCCCHHHHHHHHHHhh
Q 038727 328 YKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEV-GPHHTATVHIGCESMEEIGSACQDAW 406 (565)
Q Consensus 328 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (565)
+.+ .+|+++..-.....+.++++.+ .++.+|++.++++......+...+.. ......++.+..
T Consensus 283 ~~~-~~Ll~~~~~~~~~~~~l~~l~~-~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~-------------- 346 (474)
T TIGR02732 283 PGI-KRLLPQEWRQFEEFDNIYKLDA-VPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTA-------------- 346 (474)
T ss_pred HHH-HhhCChhhhcCHHHhhHhcCCC-CCeEEEEEEeccccccccchhhhhccccccccccccccc--------------
Confidence 985 8898763222245677888877 58999999998753221000000000 000000000000
Q ss_pred cCCCCCCCeEEEEcCCCCCC-CCCCCCccE-EEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCCc-EeEE
Q 038727 407 NGLPSRRPVMEMTIPSSLDK-TISPPGKHV-VSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFSSS-VIGY 483 (565)
Q Consensus 407 ~g~~~~~~~~~~~~~~~~d~-~~~p~G~~~-v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~-i~~~ 483 (565)
+..+.+...-+...+ ...+.|... +.+.+. + .+..+. ..++++.+++.+.|+++||.+++. +...
T Consensus 347 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~---~~~~~~--~~~~~l~~~~~~~L~~~~p~~~~~~~~~~ 414 (474)
T TIGR02732 347 -----DADFSCFADLALTSPDDYYKEGQGSLLQCVLT--P---GDPWMP--ESNEEIAKRVDKQVRALFPSSKNLKLTWS 414 (474)
T ss_pred -----CccceeeehhhccCHHHHhccCCCeEEEEEEe--C---hhhhcC--CCHHHHHHHHHHHHHHhCccccCCceeEE
Confidence 000101000001111 123334433 333221 1 011111 146899999999999999987543 2221
Q ss_pred EeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCC--CCccCc--chHHHHHHHH
Q 038727 484 DLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPG--GGVMGA--PGRNAAHVVL 557 (565)
Q Consensus 484 ~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g--~g~~~a--sg~~aa~~i~ 557 (565)
.+. .+. .++|.. .+.. ...|| ..+|+++|||+||||+.++ .++.+| ||+.||+.|+
T Consensus 415 ~v~---~~~-------~a~~~~--~pg~-~~~~P-----~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 415 SVV---KLA-------QSLYRE--APGM-DPFRP-----DQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred EEE---Eec-------Cceecc--CCCC-cccCC-----CCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 121 111 112211 1111 12467 7899999999999999654 244566 9999999874
No 13
>PLN02487 zeta-carotene desaturase
Probab=99.97 E-value=1.4e-28 Score=255.70 Aligned_cols=459 Identities=16% Similarity=0.137 Sum_probs=246.3
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhhh---hHhhhccccccCc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRP---SVIRELELKKHGL 95 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~~---~~~~~l~l~~~g~ 95 (565)
+..+|+|||||++||++|+.|+++|++|+|+|+++.+||++.++....|+.+|.|.|++....+ +++++||+.+. +
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~-~ 152 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADEN-L 152 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccc-c
Confidence 4569999999999999999999999999999999999999998865679999999987644444 57778877544 3
Q ss_pred eeecCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhhh
Q 038727 96 KLLKPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLR 175 (565)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (565)
.+.. ........++....+.. .+ +... .+ ..+..++..... ++.++++
T Consensus 153 ~~~~--~~~~~~~~~g~~~~~~~----------~~-p~~~-pl-----------~~~~~~l~~~~L-------s~~dklr 200 (569)
T PLN02487 153 LVKD--HTHTFVNKGGDVGELDF----------RF-PVGA-PL-----------HGIKAFLTTNQL-------EPYDKAR 200 (569)
T ss_pred cccc--cceeEEecCCEEeeecc----------CC-CCCc-hh-----------hhHHHHHcCCCC-------CHHHHHh
Confidence 2211 11111112222211100 00 0000 00 000000000000 0000000
Q ss_pred hhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCCh-HHHHHHHHHHHhccCCCCCCChhHHHHHHHHhc
Q 038727 176 DKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESD-VLKATVAADAITGSMASIHAPGSGYVLLHHVMG 254 (565)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 254 (565)
-.... ++...+...... ...+..+......++.+++.++..++ .++.++....+......++..++........+.
T Consensus 201 ~~~~l--~~~~~~~al~~~-~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~ 277 (569)
T PLN02487 201 NALAL--ATSPVVRALVDP-DGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLF 277 (569)
T ss_pred hcccc--cccchhhhccCc-cccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 00000 000000000000 00000111123478888998888877 455565544322221233433333222211110
Q ss_pred cccCCCccccccCCchHH-HHHHHHHHHHHcCcEEEeCcceeEEEecCC--C--ceeEEEe---CCCcEEecCEEEECCC
Q 038727 255 ETDGDRNLWSHVEGGMGS-VSLAISKAATKAGAHILVNTEVSQIMIGDS--G--EVDGVLL---VDGTRVHSSFVLSNAT 326 (565)
Q Consensus 255 ~~~~~~g~~~~~~gG~~~-l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~--~--~v~~V~~---~~G~~~~ad~VI~a~~ 326 (565)
......+...+++||... |++.+++.|+++|++|+++++|++|..+++ + ++++|++ .+++++.+|.||+|++
T Consensus 278 ~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p 357 (569)
T PLN02487 278 ATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACD 357 (569)
T ss_pred hhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCC
Confidence 011111323589999995 999999999999999999999999998731 2 3788888 3455789999999999
Q ss_pred hHHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCC--CCccccEEEeCCCCHHHHHHHHHH
Q 038727 327 PYKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEV--GPHHTATVHIGCESMEEIGSACQD 404 (565)
Q Consensus 327 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 404 (565)
++. +.+|+++..-.....+.+.++.+ ..++.+++.++++..........+.. ..+..+.++. .+
T Consensus 358 ~~~-~~~Llp~~~~~~~~~~~l~~L~~-~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~-~~----------- 423 (569)
T PLN02487 358 VPG-IKRLLPEQWREYEFFDNIYKLVG-VPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYS-AD----------- 423 (569)
T ss_pred HHH-HHHhCCchhhccHHHhHHhcCCC-eeEEEEEEEecccccccccccccccccccccccccccc-cC-----------
Confidence 997 58999874222234667777766 68999999998753221000000000 0000000100 00
Q ss_pred hhcCCCCCCCeEEE-EcCCCCCCCCC-CCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCCc-Ee
Q 038727 405 AWNGLPSRRPVMEM-TIPSSLDKTIS-PPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFSSS-VI 481 (565)
Q Consensus 405 ~~~g~~~~~~~~~~-~~~~~~d~~~~-p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~-i~ 481 (565)
...+++.. ..-+..|- .. .+| ..+.+.+. +. +..+. ..++++.+++++.|.+++|.+++. +.
T Consensus 424 ------~~~~f~~di~l~~~~~~-~~~~~g-~~l~~vis--~a---~~~~~--~~~~ei~~~~~~~L~~~~p~~~~~~v~ 488 (569)
T PLN02487 424 ------ADFSCFADLALTSPEDY-YKEGEG-SLIQAVLT--PG---DPYMP--LSNDKIVEKVHKQVLELFPSSRGLEVT 488 (569)
T ss_pred ------CCcceEeeeecCCHHHH-cccCCc-eEEEEEEc--CC---ccccC--CCHHHHHHHHHHHHHHhCcccccCceE
Confidence 01111111 10000000 01 123 33333321 11 11111 256999999999999999998654 44
Q ss_pred EEEeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCC--CCccCc--chHHHHHHHH
Q 038727 482 GYDLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPG--GGVMGA--PGRNAAHVVL 557 (565)
Q Consensus 482 ~~~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g--~g~~~a--sg~~aa~~i~ 557 (565)
...+. .+.+ ++|... +.+ ...|| ..+|+++|||+||||+.++ .++.+| ||..||+.|+
T Consensus 489 ~~~vv---~~~~-------at~~~~--pg~-~~~RP-----~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~ 550 (569)
T PLN02487 489 WSSVV---KIGQ-------SLYREA--PGM-DPFRP-----DQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYIC 550 (569)
T ss_pred EEEEE---EccC-------ceeccC--CCc-cccCC-----CCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHH
Confidence 33332 1111 122211 111 12577 7899999999999999654 244456 9999999998
Q ss_pred HHh
Q 038727 558 QDF 560 (565)
Q Consensus 558 ~~~ 560 (565)
++.
T Consensus 551 ~~~ 553 (569)
T PLN02487 551 EAG 553 (569)
T ss_pred HHh
Confidence 864
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.97 E-value=2.6e-28 Score=254.57 Aligned_cols=428 Identities=14% Similarity=0.166 Sum_probs=234.5
Q ss_pred CCEEEEcCChhHHHHHHHHHHC------CCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhhh---hHhhhcccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARG------GLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRP---SVIRELELK 91 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~------G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~~---~~~~~l~l~ 91 (565)
.+|+|||||++||+||+.|+++ |.+|+|||+++++||+++|.. ..|+.+|.|++++....+ +++++||++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 3699999999999999999986 379999999999999999987 679999999987655444 577888776
Q ss_pred ccCceeecCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHH-HHHHHHHHHHHHHHhhcCCCCCCcCCCchh
Q 038727 92 KHGLKLLKPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPR-YENELSKFCKIMDFLLDSPPPEALHGDLSF 170 (565)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (565)
.. +..... ...+.+ .++....++.+. +..+.......+.. ..... .....+...+... ....
T Consensus 81 ~~-~~~~~~-~~~~~~-~~~~~~~~p~~~------~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~----- 143 (463)
T PRK12416 81 EE-MVYNET-GISYIY-SDNTLHPIPSDT------IFGIPMSVESLFSSTLVSTK-GKIVALKDFITKN--KEFT----- 143 (463)
T ss_pred cc-eecCCC-CceEEE-ECCeEEECCCCC------eecCCCChHHhhcCCcCCHH-HHHHhhhhhccCC--CCCC-----
Confidence 43 211111 112211 133332222110 00000000000000 00000 0001111111100 0000
Q ss_pred hhhhhhhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHH--HhccCCCCCCChhHH--
Q 038727 171 HDLLRDKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADA--ITGSMASIHAPGSGY-- 246 (565)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~g~~~~~~~~~~~~-- 246 (565)
...++.+++++.+..+..+.++.... .++. .++..+...
T Consensus 144 -----------------------------------~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~--~~~~ls~~~~~ 186 (463)
T PRK12416 144 -----------------------------------KDTSLALFLESFLGKELVERQIAPVLSGVYSG--KLNELTMASTL 186 (463)
T ss_pred -----------------------------------CCCCHHHHHHHhcCHHHHHHHHHHHhcccccC--CcccccHHHhh
Confidence 12344555555444443333333221 1111 122221111
Q ss_pred H-HHHHH---------h----cc-ccCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC
Q 038727 247 V-LLHHV---------M----GE-TDGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV 311 (565)
Q Consensus 247 ~-~~~~~---------~----~~-~~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~ 311 (565)
. +.... + .. .......+.+++||+++|+++|++.+.+ ++|+++++|++|..++ +++. |++.
T Consensus 187 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~~-v~~~ 262 (463)
T PRK12416 187 PYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQG-DRYE-ISFA 262 (463)
T ss_pred HHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcC-CEEE-EEEC
Confidence 0 00000 0 00 0011123457899999999999998865 6899999999999887 7764 8888
Q ss_pred CCcEEecCEEEECCChHHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeC
Q 038727 312 DGTRVHSSFVLSNATPYKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIG 391 (565)
Q Consensus 312 ~G~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (565)
+|+++.||+||+|+++.. +.+|+.++.+ .+.++++.+ .+++++++.++.+. +. + ++...+.+.-
T Consensus 263 ~g~~~~ad~VI~a~p~~~-~~~ll~~~~l----~~~~~~~~~-~~~~~v~l~~~~~~-~~-~-------~~~g~G~l~~- 326 (463)
T PRK12416 263 NHESIQADYVVLAAPHDI-AETLLQSNEL----NEQFHTFKN-SSLISIYLGFDILD-EQ-L-------PADGTGFIVT- 326 (463)
T ss_pred CCCEEEeCEEEECCCHHH-HHhhcCCcch----hHHHhcCCC-CceEEEEEEechhh-cC-C-------CCCceEEEee-
Confidence 888899999999998777 4788865433 345667766 58999999998643 11 0 0112222221
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCccEEEEEccc-ccCCCCCCCCCChhHHHHHHHHHHHHHH
Q 038727 392 CESMEEIGSACQDAWNGLPSRRPVMEMTIPSSLDKTISPPGKHVVSLFTQY-TPYKPSDGSWEDPTYRESYAQKCFSLID 470 (565)
Q Consensus 392 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~p~G~~~v~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~l~ 470 (565)
.. .......+..+++..+..+|++..++.+++.. .+.. ..+.+ ..++++.+.+++.|+
T Consensus 327 ~~-----------------~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~-~~dee~~~~~~~~L~ 385 (463)
T PRK12416 327 EN-----------------SDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVY---ETIKN-YSEEELVRVALYDIE 385 (463)
T ss_pred CC-----------------CCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCc---hhhhc-CCHHHHHHHHHHHHH
Confidence 10 00011123445555555556555555555321 1110 01221 246899999999999
Q ss_pred HhCCCCCCcEeEEEeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCCCCccCc--c
Q 038727 471 EYAPGFSSSVIGYDLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPGGGVMGA--P 548 (565)
Q Consensus 471 ~~~P~~~~~i~~~~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g~g~~~a--s 548 (565)
+++. +....+...+. .|.. ..|.+.+.+.. ...+. ++ ..+.+.+|||+||++. .|.|+++| |
T Consensus 386 ~~lG-~~~~p~~~~v~---~W~~--a~P~y~~~~~~-~~~~~---~~-----~l~~~~~~l~~aG~~~-~g~~i~~ai~s 449 (463)
T PRK12416 386 KSLG-IKGEPEVVEVT---NWKD--LMPKYHLEHNQ-AVQSL---QE-----KMMNLYPNIYLAGASY-YGVGIGACIGN 449 (463)
T ss_pred HHhC-CCCCceEEEEE---Eccc--cCCCcCcCHHH-HHHHH---HH-----HHHhhCCCeEEecccc-ccccHHHHHHH
Confidence 9984 54445444442 3442 34433322111 11111 11 1223468999999996 46789987 9
Q ss_pred hHHHHHHHHHHh
Q 038727 549 GRNAAHVVLQDF 560 (565)
Q Consensus 549 g~~aa~~i~~~~ 560 (565)
|+.||++|++.+
T Consensus 450 g~~aA~~i~~~~ 461 (463)
T PRK12416 450 GKNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHHh
Confidence 999999999775
No 15
>PRK07208 hypothetical protein; Provisional
Probab=99.96 E-value=1.6e-27 Score=249.89 Aligned_cols=424 Identities=15% Similarity=0.130 Sum_probs=234.5
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhhh---hHhhhccccccCc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRP---SVIRELELKKHGL 95 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~~---~~~~~l~l~~~g~ 95 (565)
++.||+|||||++||+||++|+++|++|+|+|+++++||++.+.. .+|+.+|.|++++....+ +++++++..+. +
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~-~ 80 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDD-F 80 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCc-c
Confidence 457899999999999999999999999999999999999999876 679999999987655444 46666654221 1
Q ss_pred eeecCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhhh
Q 038727 96 KLLKPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLR 175 (565)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (565)
.. ........ .+|....++.+. .+.+..... ........+.+...... . .
T Consensus 81 ~~--~~~~~~~~-~~g~~~~~p~~~---~~~l~~~~~---------~~~~~~~~~~~~~~~~~---~--~---------- 130 (479)
T PRK07208 81 LL--RPRLSRIY-YRGKFFDYPLKA---FDALKNLGL---------WRTAKCGASYLKARLRP---R--K---------- 130 (479)
T ss_pred cc--ccccceEE-ECCEEecCCcch---hHHHHhCCH---------hHHHHHHHHHHHHhcCC---C--C----------
Confidence 11 11111111 134443332211 011110100 00011111111110000 0 0
Q ss_pred hhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHH--HhccCCCCCCChhHH-------
Q 038727 176 DKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADA--ITGSMASIHAPGSGY------- 246 (565)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~g~~~~~~~~~~~~------- 246 (565)
...++.+++.+.+..+..+.++.... .++. .++..+..+
T Consensus 131 ------------------------------~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~--~~~~~s~~~~~~~~~~ 178 (479)
T PRK07208 131 ------------------------------EEDSFEDWVINRFGRRLYSTFFKGYTEKVWGV--PCDEISADWAAQRIKG 178 (479)
T ss_pred ------------------------------CCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCC--ChHHCCChHHhCcccC
Confidence 01233333333333322222222110 1111 111111100
Q ss_pred -----HHHHHHhc----------cccCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCc-eeEEEe
Q 038727 247 -----VLLHHVMG----------ETDGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGE-VDGVLL 310 (565)
Q Consensus 247 -----~~~~~~~~----------~~~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~-v~~V~~ 310 (565)
.+...... ........+.+|+||++.|+++|.+.+++.|++|++|++|++|..++ ++ ++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~ 257 (479)
T PRK07208 179 LSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVV 257 (479)
T ss_pred CCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEE
Confidence 00000000 00001124568999999999999999999999999999999999987 55 444443
Q ss_pred C--CCc--EEecCEEEECCChHHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCcccc
Q 038727 311 V--DGT--RVHSSFVLSNATPYKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTA 386 (565)
Q Consensus 311 ~--~G~--~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (565)
. +|+ ++.||+||+|+++..+ ..++.+ .+++...+.++++.+. +++++++.++++... +.+
T Consensus 258 ~~~~g~~~~~~ad~VI~a~p~~~l-~~~l~~-~~~~~~~~~~~~l~~~-~~~~v~l~~~~~~~~-----------~~~-- 321 (479)
T PRK07208 258 NDTDGTEETVTADQVISSMPLREL-VAALDP-PPPPEVRAAAAGLRYR-DFITVGLLVKELNLF-----------PDN-- 321 (479)
T ss_pred EcCCCCEEEEEcCEEEECCCHHHH-HHhcCC-CCCHHHHHHHhCCCcc-eeEEEEEEecCCCCC-----------CCc--
Confidence 2 353 5889999999999886 566653 4677888888888884 789999999876421 112
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHH
Q 038727 387 TVHIGCESMEEIGSACQDAWNGLPSRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCF 466 (565)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 466 (565)
++++.+. ..+.-.+..+++.+|..+|+|++ .++.+.+..+. ....|.. .++++.++++
T Consensus 322 ~~~~~~~------------------~~~~~r~~~~~~~~~~~~p~g~~-~~l~~~~~~~~-~~~~~~~--~deel~~~~~ 379 (479)
T PRK07208 322 WIYIHDP------------------DVKVGRLQNFNNWSPYLVPDGRD-TWLGLEYFCFE-GDDLWNM--SDEDLIALAI 379 (479)
T ss_pred eEEecCC------------------CCccceecccccCCcccCCCCCc-eEEEEEEEccC-CCccccC--CHHHHHHHHH
Confidence 4444221 00111234456667888899885 22221111111 1113432 4688999999
Q ss_pred HHHHHhCCCCCCcEeEEEeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCC-CCcc
Q 038727 467 SLIDEYAPGFSSSVIGYDLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPG-GGVM 545 (565)
Q Consensus 467 ~~l~~~~P~~~~~i~~~~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g-~g~~ 545 (565)
+.|.++.+.-.+.++...+.. ++. ..|.....+ ...... .+ ...++.+|||+||...... ..+.
T Consensus 380 ~~L~~l~~~~~~~~~~~~v~r---~~~--a~P~y~~~~-~~~~~~---~~------~~~~~~~~l~laGr~~~~~~~~~d 444 (479)
T PRK07208 380 QELARLGLIRPADVEDGFVVR---VPK--AYPVYDGTY-ERNVEI---IR------DLLDHFPNLHLVGRNGMHRYNNQD 444 (479)
T ss_pred HHHHHcCCCChhheeEEEEEE---ecC--cccCCCchH-HHHHHH---HH------HHHHhcCCceeeccccccccCChh
Confidence 999997542145555554421 221 122111111 111111 01 1234579999999775322 3555
Q ss_pred Cc--chHHHHHHHHHHh
Q 038727 546 GA--PGRNAAHVVLQDF 560 (565)
Q Consensus 546 ~a--sg~~aa~~i~~~~ 560 (565)
+| ||..||++|+..-
T Consensus 445 ~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 445 HSMLTAMLAVENIIAGE 461 (479)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 66 9999999997753
No 16
>PLN02576 protoporphyrinogen oxidase
Probab=99.96 E-value=1.2e-26 Score=244.36 Aligned_cols=437 Identities=15% Similarity=0.153 Sum_probs=234.6
Q ss_pred CCCCCEEEEcCChhHHHHHHHHHHC-CCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhhhhHh--hhccccccC
Q 038727 18 DKKWDALVIGGGHNGLIAAAYLARG-GLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSVI--RELELKKHG 94 (565)
Q Consensus 18 ~~~~dViIIGaGiaGL~aA~~La~~-G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~~~~~--~~l~l~~~g 94 (565)
..++||+|||||++||+||++|+++ |++|+|||+++++||++.|.. .+||.+|.|++++....+.+. .+.++.+.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~gl~~~- 87 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDSGLRDD- 87 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHcCChhh-
Confidence 3567999999999999999999999 999999999999999999987 689999999988765555332 22255432
Q ss_pred ceeecCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhh
Q 038727 95 LKLLKPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLL 174 (565)
Q Consensus 95 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (565)
+.+.... .....+.+|+...++.+.. .+.... +....+.+......+. . ...... .
T Consensus 88 ~~~~~~~-~~~~~~~~g~~~~~p~~~~----~~~~~~------~~~~~~~~~~~~~~~~-~-~~~~~~--~--------- 143 (496)
T PLN02576 88 LVFPDPQ-APRYVVWNGKLRPLPSNPI----DLPTFD------LLSAPGKIRAGLGAFG-W-KRPPPP--G--------- 143 (496)
T ss_pred eecCCCC-ceEEEEECCEEEEcCCChH----HhcCcC------cCChhHHHHHhHHHhh-c-cCCCCC--C---------
Confidence 2222211 1122233555554443321 111000 0000011110001010 0 000000 0
Q ss_pred hhhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHH--HhccCCCCCCChhHHHH----
Q 038727 175 RDKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADA--ITGSMASIHAPGSGYVL---- 248 (565)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--~~g~~~~~~~~~~~~~~---- 248 (565)
...++.+++.+.+..+..+.++.... .++. .++..+....+
T Consensus 144 -------------------------------~~~sv~~~l~~~~g~~~~~~~~~p~~~~~~~~--~~~~lS~~~~~~~~~ 190 (496)
T PLN02576 144 -------------------------------REESVGEFVRRHLGDEVFERLIDPFVSGVYAG--DPSSLSMKAAFPKLW 190 (496)
T ss_pred -------------------------------CCCcHHHHHHHhcCHHHHHHHHHHHhCceecC--CHHHHhHHHHhHHHH
Confidence 12334444444443333333332210 1110 11111110000
Q ss_pred -------------HHHHhccc--------------cCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecC
Q 038727 249 -------------LHHVMGET--------------DGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGD 301 (565)
Q Consensus 249 -------------~~~~~~~~--------------~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~ 301 (565)
+....... ......+ .++||+++|+++|++.+.+ ++|++|++|++|..++
T Consensus 191 ~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gG~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~ 267 (496)
T PLN02576 191 NLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVG-SFRGGLQTLPDALAKRLGK--DKVKLNWKVLSLSKND 267 (496)
T ss_pred HHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeE-eccchHHHHHHHHHHhhCc--CcEEcCCEEEEEEECC
Confidence 00000000 0001123 6799999999999876621 6899999999999887
Q ss_pred CCc-eeEEEe--CCCc-EEecCEEEECCChHHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCC
Q 038727 302 SGE-VDGVLL--VDGT-RVHSSFVLSNATPYKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQ 377 (565)
Q Consensus 302 ~~~-v~~V~~--~~G~-~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 377 (565)
++ +. |.+ .+|+ ++.||+||+|+|+..+ ..++.+ .+++..+.++++.| .++.+|++.++++. |.. ...
T Consensus 268 -~~~~~-v~~~~~~g~~~~~ad~VI~a~P~~~l-~~ll~~--~~~~~~~~l~~~~~-~~~~~v~l~~~~~~-~~~--~~~ 338 (496)
T PLN02576 268 -DGGYS-LTYDTPEGKVNVTAKAVVMTAPLYVV-SEMLRP--KSPAAADALPEFYY-PPVAAVTTSYPKEA-VKR--ERL 338 (496)
T ss_pred -CCcEE-EEEecCCCceeEEeCEEEECCCHHHH-HHHhcc--cCHHHHHHhccCCC-CceEEEEEEEchHH-ccc--ccc
Confidence 54 33 443 3553 6899999999998884 788765 56677888999988 47888999988742 210 000
Q ss_pred cCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhH
Q 038727 378 LEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTY 457 (565)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~ 457 (565)
.+.+... .-++... ....+.+.+...+...|.+.|++..+++.++..... ..-++ ..
T Consensus 339 ~~~~~~~--~g~l~~~----------------~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~---~~~~~--~s 395 (496)
T PLN02576 339 IDGPLEG--FGQLHPR----------------KQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRN---TGIAS--AS 395 (496)
T ss_pred cCCCCCc--eEEEccC----------------CCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCC---ccccc--CC
Confidence 0001111 1111110 011234445555666777788887777666431111 11122 25
Q ss_pred HHHHHHHHHHHHHHhCCCCC-CcEeEEEeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCC
Q 038727 458 RESYAQKCFSLIDEYAPGFS-SSVIGYDLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGS 536 (565)
Q Consensus 458 k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~ 536 (565)
++++.+.+++.|.++++.-. ...+...+. .|.. ..|...+.+... .... .++ -.....+|||+||+
T Consensus 396 ~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~---~w~~--a~P~~~~g~~~~-~~~~--~~~-----l~~~~~~~l~~aG~ 462 (496)
T PLN02576 396 EEELVEAVDRDLRKLLLKPGAPPPKVVGVR---VWPK--AIPQYLLGHLDV-LEAA--EKM-----EKDLGLPGLFLGGN 462 (496)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcEEEEe---EcCc--ccCCCCcCHHHH-HHHH--HHH-----HHhcCCCCEEEecc
Confidence 68999999999999986321 122222221 2321 222222211100 0000 000 00011279999999
Q ss_pred CCCCCCCccCc--chHHHHHHHHHHhhh
Q 038727 537 GSHPGGGVMGA--PGRNAAHVVLQDFKK 562 (565)
Q Consensus 537 ~~~~g~g~~~a--sg~~aa~~i~~~~~~ 562 (565)
|+. |.|+++| ||+.||++|++.+.+
T Consensus 463 ~~~-g~~i~~ai~sg~~aA~~i~~~~~~ 489 (496)
T PLN02576 463 YRG-GVALGKCVESGYEAADLVISYLES 489 (496)
T ss_pred ccC-CccHHHHHHHHHHHHHHHHHHHhh
Confidence 995 6789987 999999999987643
No 17
>PLN02268 probable polyamine oxidase
Probab=99.96 E-value=2.1e-26 Score=238.31 Aligned_cols=235 Identities=18% Similarity=0.135 Sum_probs=145.9
Q ss_pred cccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhh--cCCCCCCC
Q 038727 264 SHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMG--LVPRDVLP 341 (565)
Q Consensus 264 ~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~--l~~~~~~~ 341 (565)
.++.+|++.++++|.+ +.+|++|++|++|...+ +++. |++.+|+++.||+||+|+|+..+ .+ +...+.+|
T Consensus 194 ~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~~-~~v~-v~~~~g~~~~ad~VIva~P~~~l-~~~~i~f~p~lp 265 (435)
T PLN02268 194 GLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRRY-NGVK-VTVEDGTTFVADAAIIAVPLGVL-KANIIKFEPELP 265 (435)
T ss_pred eeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEcC-CcEE-EEECCCcEEEcCEEEEecCHHHH-hcCcceecCCCC
Confidence 3678899999999854 45799999999999887 7766 88888888999999999998874 43 22345689
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcC
Q 038727 342 DDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEMTIP 421 (565)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 421 (565)
+...+.++++.++ ...++++.++++. |. + ....+.+. +. .....+....
T Consensus 266 ~~~~~ai~~~~~g-~~~Kv~l~f~~~f-w~-------~--~~~~g~~~--~~------------------~~~~~~~~~~ 314 (435)
T PLN02268 266 EWKEEAISDLGVG-IENKIALHFDSVF-WP-------N--VEFLGVVA--PT------------------SYGCSYFLNL 314 (435)
T ss_pred HHHHHHHHhCCcc-ceeEEEEEeCCCC-CC-------C--CceeeccC--CC------------------CCCceEEEec
Confidence 8889999999884 7889999999852 31 1 11111110 00 0111111111
Q ss_pred CCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCCcEeEEEeCChhhHHHHcCCCCCc
Q 038727 422 SSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFSSSVIGYDLLTPPDLEREFGLTGGN 501 (565)
Q Consensus 422 ~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~t~~~~~~~~~G~ 501 (565)
. .+.|+.++++++.. +.. ..+.. ...+++.+.+++.|.+++|...+-+ ...+ ..|... ....|+
T Consensus 315 -----~-~~~g~~~l~~~~~g-~~a---~~~~~-~~~~e~~~~v~~~L~~~~~~~~~p~-~~~~---~~W~~d-p~~~G~ 378 (435)
T PLN02268 315 -----H-KATGHPVLVYMPAG-RLA---RDIEK-LSDEAAANFAMSQLKKMLPDATEPV-QYLV---SRWGSD-PNSLGC 378 (435)
T ss_pred -----c-cCCCCCEEEEEecc-HHH---HHHHh-CCHHHHHHHHHHHHHHHcCCCCCcc-EEEe---cccCCC-CCCCcc
Confidence 1 12456666665321 111 01211 2458899999999999998643322 2222 245443 333443
Q ss_pred cccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCC-C-CccCc--chHHHHHHHHHHh
Q 038727 502 IFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPG-G-GVMGA--PGRNAAHVVLQDF 560 (565)
Q Consensus 502 ~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g-~-g~~~a--sg~~aa~~i~~~~ 560 (565)
..... +.+....++ ..+.|+.+|||||+.+... . .+.|| ||++||++|++.|
T Consensus 379 ~~~~~--~g~~~~~~~-----~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 379 YSYDL--VGKPHDLYE-----RLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCCCC--CCCCHHHHH-----HHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 22111 111110111 3456788999999998542 2 45677 9999999999764
No 18
>PLN02568 polyamine oxidase
Probab=99.95 E-value=2.6e-25 Score=231.52 Aligned_cols=100 Identities=21% Similarity=0.187 Sum_probs=84.0
Q ss_pred ccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhh------cCC
Q 038727 263 WSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMG------LVP 336 (565)
Q Consensus 263 ~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~------l~~ 336 (565)
+..+.||++.|+++|++.+. +.+|++|++|++|..++ +.+. |++.+|+++.||+||+|+|+..+ .. +..
T Consensus 234 ~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~-~~v~-V~~~dG~~~~aD~VIvTvPl~vL-~~~~~~~~i~F 308 (539)
T PLN02568 234 EITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQD-EPVK-LHFADGSTMTADHVIVTVSLGVL-KAGIGEDSGLF 308 (539)
T ss_pred eEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeC-CeEE-EEEcCCCEEEcCEEEEcCCHHHH-hhcccccccee
Confidence 34789999999999988874 35799999999999887 7666 88889988999999999998874 43 334
Q ss_pred CCCCCHHHHHHHhhcCCCCceEEEEEecCCCC
Q 038727 337 RDVLPDDFLRAIKYSDYHSGVTKINVAVDKLP 368 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 368 (565)
.+.+|....++++++.+ ..+.++++.+++++
T Consensus 309 ~P~LP~~k~~Ai~~l~~-g~~~Ki~l~f~~~f 339 (539)
T PLN02568 309 SPPLPDFKTDAISRLGF-GVVNKLFVELSPRP 339 (539)
T ss_pred cCCCCHHHHHHHHhcCC-ceeeEEEEEecCCC
Confidence 56699999999999998 48999999999864
No 19
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.94 E-value=3e-25 Score=214.90 Aligned_cols=240 Identities=20% Similarity=0.142 Sum_probs=157.9
Q ss_pred ccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCCCCCCHHH
Q 038727 265 HVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPRDVLPDDF 344 (565)
Q Consensus 265 ~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~ 344 (565)
.+.|||+.|++++++.+ |-.|+++++|.+|...+ ++|+ |++.+..++.+|+|||++|+.. +.++--.+.+++.+
T Consensus 203 ~~~GGmd~la~Afa~ql---~~~I~~~~~V~rI~q~~-~gV~-Vt~~~~~~~~ad~~i~tiPl~~-l~qI~f~P~l~~~~ 276 (450)
T COG1231 203 QRLGGMDQLAEAFAKQL---GTRILLNEPVRRIDQDG-DGVT-VTADDVGQYVADYVLVTIPLAI-LGQIDFAPLLPAEY 276 (450)
T ss_pred ccCccHHHHHHHHHHHh---hceEEecCceeeEEEcC-CeEE-EEeCCcceEEecEEEEecCHHH-HhhcccCCCCCHHH
Confidence 45599999999997766 56899999999999998 7777 8888845699999999998877 57777667789999
Q ss_pred HHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCC
Q 038727 345 LRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEMTIPSSL 424 (565)
Q Consensus 345 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 424 (565)
+++++...| .+..++.+.++++. |. +.. .+.|..+. +.+..+++.+++
T Consensus 277 ~~a~~~~~y-~~~~K~~v~f~rpF-We-------e~~-~l~G~~~t---------------------D~~~~~i~~~s~- 324 (450)
T COG1231 277 KQAAKGVPY-GSATKIGVAFSRPF-WE-------EAG-ILGGESLT---------------------DLGLGFISYPSA- 324 (450)
T ss_pred HHHhcCcCc-chheeeeeecCchh-hh-------hcc-cCCceEee---------------------cCCcceEecCcc-
Confidence 999999888 48999999999863 42 221 12233332 233456777665
Q ss_pred CCCCCCCCccEEEEE-cccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC-CCcEeEEEeCChhhHHHHcCCCCCcc
Q 038727 425 DKTISPPGKHVVSLF-TQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGF-SSSVIGYDLLTPPDLEREFGLTGGNI 502 (565)
Q Consensus 425 d~~~~p~G~~~v~~~-~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~-~~~i~~~~~~tp~t~~~~~~~~~G~~ 502 (565)
+. .+|..++.-+ +-.... ..|+-- ..++..+.++..+.++||+- .+....... .+|.++ ..+.| .
T Consensus 325 ~~---~~G~gVl~g~~~~g~~A----~~~~~~-~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~---~~W~~d-pwt~G-~ 391 (450)
T COG1231 325 PF---ADGPGVLLGSYAFGDDA----LVIDAL-PEAERRQKVLARLAKLFGDEAADPFDYGAS---VDWSKD-PWTLG-G 391 (450)
T ss_pred cc---CCCceEEEeeeeccccc----eeEecC-CHHHHHHHHHHhHhhhCChhhcccccccee---eecccC-CcCCc-c
Confidence 22 2455655442 111111 123321 35788999999999999943 333333111 235554 33334 1
Q ss_pred ccccCCccccccCCCCCCCCCCCCCCCCeEEcC-CCC-CCCCCccCc--chHHHHHHHHHHhh
Q 038727 503 FHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCG-SGS-HPGGGVMGA--PGRNAAHVVLQDFK 561 (565)
Q Consensus 503 ~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG-~~~-~~g~g~~~a--sg~~aa~~i~~~~~ 561 (565)
+. .....+..-.-| ....|...+|||| .++ ..++.+.|| ||+.||.+|...+.
T Consensus 392 ~a-a~~~g~~~~~~~-----~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 392 TA-AYPPGQRTKLYP-----TLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred cc-ccCCcccccccc-----cccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 11 122222211112 3345788899999 665 344567788 99999999998764
No 20
>PLN02529 lysine-specific histone demethylase 1
Probab=99.94 E-value=1.5e-24 Score=229.90 Aligned_cols=418 Identities=16% Similarity=0.129 Sum_probs=219.9
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccC-CC--ceeccchhhhhhhhh----hHhhhcccc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELI-PG--FKFSRCSYLQSLLRP----SVIRELELK 91 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~-~G--~~~d~g~~~~~~~~~----~~~~~l~l~ 91 (565)
...||+|||||++||+||..|+++|++|+|||+++++||++.+.... +| +.+|.|+.++..... .+.+++++.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~ 238 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIP 238 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCC
Confidence 56799999999999999999999999999999999999999987632 23 479999977654322 355566443
Q ss_pred ccCceeecCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhh
Q 038727 92 KHGLKLLKPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFH 171 (565)
Q Consensus 92 ~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (565)
+.+.......+..+|..+....+. .+. ..+ ...++++.+.. ...... ...
T Consensus 239 -----~~~~~~~~~~~~~~G~~v~~~~~~-----~~~-------~~~---~~~l~~~~~l~-~~~~~~-----~~d---- 288 (738)
T PLN02529 239 -----LHKVRDNCPLYKPDGALVDKEIDS-----NIE-------FIF---NKLLDKVTELR-QIMGGF-----AND---- 288 (738)
T ss_pred -----ccccCCCceEEeCCCcCcchhhhh-----hHH-------HHH---HHHHHHHHHHH-HhcccC-----ccC----
Confidence 323223222333444443211110 000 001 11111111110 000000 000
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHccc------CChHHHHHHHHHH-HhccCCCCCCChh
Q 038727 172 DLLRDKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWF------ESDVLKATVAADA-ITGSMASIHAPGS 244 (565)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~l~~~~~~~~-~~g~~~~~~~~~~ 244 (565)
.++.+++++.. .++.-++++.... .+.. .... ...
T Consensus 289 ------------------------------------~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~-a~~~-~~s 330 (738)
T PLN02529 289 ------------------------------------ISLGSVLERLRQLYGVARSTEERQLLDWHLANLEY-ANAG-CLS 330 (738)
T ss_pred ------------------------------------CCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhce-ecCC-ChH
Confidence 11111111100 1111122222111 0110 0111 112
Q ss_pred HHHHHHHHhccccCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEEC
Q 038727 245 GYVLLHHVMGETDGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSN 324 (565)
Q Consensus 245 ~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a 324 (565)
.+++..+.........|.+..+.||+++|+++|++. ..|++|++|++|..++ ++|+ |++ +++++.||+||+|
T Consensus 331 ~LSl~~~~~~~~~e~~G~~~~i~GG~~~Li~aLA~~-----L~IrLnt~V~~I~~~~-dGVt-V~t-~~~~~~AD~VIVT 402 (738)
T PLN02529 331 DLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCEG-----VPIFYGKTVDTIKYGN-DGVE-VIA-GSQVFQADMVLCT 402 (738)
T ss_pred HhhhhHhhhccccccCCceEEECCcHHHHHHHHHhc-----CCEEcCCceeEEEEcC-CeEE-EEE-CCEEEEcCEEEEC
Confidence 222222211100112334447899999999999764 3599999999999987 6665 654 4457999999999
Q ss_pred CChHHHHh--hcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHH
Q 038727 325 ATPYKTFM--GLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSAC 402 (565)
Q Consensus 325 ~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (565)
+|+..+ . .+...+++|+...++++++.| ..+.+|++.++++. |. .. ....+ ++....
T Consensus 403 VPlgVL-k~~~I~F~PpLP~~K~~AI~rL~y-G~v~KV~L~F~~~F-W~-------~~-~~~fG--~l~~~~-------- 461 (738)
T PLN02529 403 VPLGVL-KKRTIRFEPELPRRKLAAIDRLGF-GLLNKVAMVFPSVF-WG-------EE-LDTFG--CLNESS-------- 461 (738)
T ss_pred CCHHHH-HhccccCCCCCCHHHHHHHHcCCC-ceeEEEEEEeCCcc-cc-------CC-CCceE--EEeccC--------
Confidence 998884 4 343355689999999999999 48999999998852 32 10 11111 111100
Q ss_pred HHhhcCCCCCCCeEEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC--CC-Cc
Q 038727 403 QDAWNGLPSRRPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPG--FS-SS 479 (565)
Q Consensus 403 ~~~~~g~~~~~~~~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~--~~-~~ 479 (565)
.....+++.. + ... +.|..++.+++.. +.. ..++. ...+++.+.+++.|.++|+. .. ..
T Consensus 462 --------~~~g~~~~~~-~---~~~-~~ggpvLvafv~G-~~A---~~le~-lsdeeii~~vl~~L~~ifgp~~~~vp~ 523 (738)
T PLN02529 462 --------NKRGEFFLFY-G---YHT-VSGGPALVALVAG-EAA---QRFEN-TDPSTLLHRVLSVLRGIYNPKGINVPD 523 (738)
T ss_pred --------CCCceEEEEe-c---CCC-CCCCCEEEEEECc-hhh---HHHhc-CCHHHHHHHHHHHHHHHhCccccccCC
Confidence 0111112221 1 111 2234556665431 111 01221 24578899999999998852 21 12
Q ss_pred EeEEEeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCC-CCCeEEcCCCCCCC--CCccCc--chHHHHH
Q 038727 480 VIGYDLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTP-VRGLYLCGSGSHPG--GGVMGA--PGRNAAH 554 (565)
Q Consensus 480 i~~~~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~-i~~lylaG~~~~~g--~g~~~a--sg~~aa~ 554 (565)
.+...+ ..|... ....|+...... .+....+. ....| ..+|||||+++.++ +-+.|| ||.+||+
T Consensus 524 Pi~~v~---t~W~~D-P~s~GsYS~~~~--g~~~~d~~-----~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~ 592 (738)
T PLN02529 524 PIQTIC---TRWGSD-PLSYGSYSHVRV--QSSGSDYD-----ILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREAS 592 (738)
T ss_pred ceEEEE---ccCCcC-CCCCCCcccCCC--CCchhHHH-----HHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHH
Confidence 222211 235443 333444322111 00000000 11233 36799999998543 245577 9999999
Q ss_pred HHHHHhhh
Q 038727 555 VVLQDFKK 562 (565)
Q Consensus 555 ~i~~~~~~ 562 (565)
+|++.+++
T Consensus 593 eIl~~l~~ 600 (738)
T PLN02529 593 RILHVARS 600 (738)
T ss_pred HHHHHHhh
Confidence 99987644
No 21
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.94 E-value=7.5e-25 Score=232.87 Aligned_cols=245 Identities=15% Similarity=0.096 Sum_probs=144.7
Q ss_pred ccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHh--hcCCCC
Q 038727 261 NLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFM--GLVPRD 338 (565)
Q Consensus 261 g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~--~l~~~~ 338 (565)
+.+.++.||++.|+++|++.+ .|++|++|++|...+ +++. | +.+|+++.||+||+|+|+..+ . .+...+
T Consensus 427 G~~~~v~GG~~~Li~aLa~~L-----~I~ln~~V~~I~~~~-dgV~-V-~~~G~~~~AD~VIvTvPl~vL-k~~~I~F~P 497 (808)
T PLN02328 427 GDHCFIPGGNDTFVRELAKDL-----PIFYERTVESIRYGV-DGVI-V-YAGGQEFHGDMVLCTVPLGVL-KKGSIEFYP 497 (808)
T ss_pred CeEEEECCcHHHHHHHHHhhC-----CcccCCeeEEEEEcC-CeEE-E-EeCCeEEEcCEEEECCCHHHH-hhcccccCC
Confidence 334578899999999998765 389999999999987 6654 5 456778999999999998874 4 233345
Q ss_pred CCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEE
Q 038727 339 VLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEM 418 (565)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 418 (565)
.+|....++++++.|+ .+.+|++.++.+. |. . .....+.+.- +. ..... +.
T Consensus 498 ~LP~~K~~AI~~l~yG-~~~KV~L~F~~~F-W~-------~-~~d~fG~l~~--d~----------------s~rG~-~~ 548 (808)
T PLN02328 498 ELPQRKKDAIQRLGYG-LLNKVALLFPYNF-WG-------G-EIDTFGHLTE--DP----------------SMRGE-FF 548 (808)
T ss_pred CCCHHHHHHHHcCCCc-ceEEEEEEeCCcc-cc-------C-CCCceEEEee--cC----------------CCCce-EE
Confidence 6999999999999994 8899999998853 32 1 0111122221 10 00111 11
Q ss_pred EcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC--C-CCcEeEEEeCChhhHHHHc
Q 038727 419 TIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPG--F-SSSVIGYDLLTPPDLEREF 495 (565)
Q Consensus 419 ~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~--~-~~~i~~~~~~tp~t~~~~~ 495 (565)
.+.+. + .+.|..++..++.. ++. ..++. ..++++.+.+++.|.++|+. . ....+...+ ..|.+.
T Consensus 549 lf~s~---s-~~~G~~vLvafv~G-~~A---~~~e~-lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~v---trW~~D- 615 (808)
T PLN02328 549 LFYSY---S-SVSGGPLLIALVAG-DAA---VKFET-LSPVESVKRVLQILRGIFHPKGIVVPDPVQAVC---TRWGKD- 615 (808)
T ss_pred EEecC---C-CCCCCcEEEEEecC-hhh---HHHhc-CCHHHHHHHHHHHHHHHhCcccccccCcceEEE---ecCCCC-
Confidence 11211 0 12345666666431 111 11211 14578889999999998752 1 112222222 235443
Q ss_pred CCCCCccccccCCccccccCCCCCCCCCCCCCC--CCeEEcCCCCCCC--CCccCc--chHHHHHHHHHHhhhh
Q 038727 496 GLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPV--RGLYLCGSGSHPG--GGVMGA--PGRNAAHVVLQDFKKQ 563 (565)
Q Consensus 496 ~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i--~~lylaG~~~~~g--~g~~~a--sg~~aa~~i~~~~~~~ 563 (565)
....|+.-... +.+.....+ ....|+ .+|||||+++... +.+.|| ||.+||++|++.+.+.
T Consensus 616 P~s~GSYS~~~--pG~~~~~~~-----~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~ 682 (808)
T PLN02328 616 CFTYGSYSYVA--VGSSGDDYD-----ILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRR 682 (808)
T ss_pred CCcCCCCCCCC--CCCchhHHH-----HHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhc
Confidence 22234321111 111100000 123344 4799999998532 345687 9999999999977554
No 22
>PLN03000 amine oxidase
Probab=99.94 E-value=8.7e-25 Score=231.92 Aligned_cols=242 Identities=14% Similarity=0.119 Sum_probs=148.1
Q ss_pred ccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHh--hcCCCC
Q 038727 261 NLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFM--GLVPRD 338 (565)
Q Consensus 261 g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~--~l~~~~ 338 (565)
+.+..+.||++.|+++|++.+ .|+++++|++|...+ +++. |++.+ +++.||+||+|+|+..+ . .+...+
T Consensus 371 G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~~-dgV~-V~~~~-~~~~AD~VIvTVPlgVL-k~~~I~F~P 441 (881)
T PLN03000 371 GDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYGS-NGVK-VIAGN-QVYEGDMVLCTVPLGVL-KNGSIKFVP 441 (881)
T ss_pred CceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEECC-CeEE-EEECC-cEEEeceEEEcCCHHHH-hhCceeeCC
Confidence 334468899999999998766 399999999999987 7666 66654 47999999999998874 5 344456
Q ss_pred CCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEE
Q 038727 339 VLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEM 418 (565)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 418 (565)
++|....++++++.|+ .+.+|++.++++. |. . .....+.+.- .. ......++
T Consensus 442 pLP~~K~~AI~rL~~G-~l~KViL~Fd~~F-W~-------~-d~~~FG~l~~-~~-----------------~~rg~~~~ 493 (881)
T PLN03000 442 ELPQRKLDCIKRLGFG-LLNKVAMLFPYVF-WS-------T-DLDTFGHLTE-DP-----------------NYRGEFFL 493 (881)
T ss_pred CCCHHHHHHHHcCCCc-ceEEEEEEeCCcc-cc-------C-CCCceeEEec-CC-----------------CCCceeEE
Confidence 6999999999999995 8999999999862 42 1 1111222211 00 00111122
Q ss_pred EcCCCCCCCCCC-CCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC--CC-CcEeEEEeCChhhHHHH
Q 038727 419 TIPSSLDKTISP-PGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPG--FS-SSVIGYDLLTPPDLERE 494 (565)
Q Consensus 419 ~~~~~~d~~~~p-~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~--~~-~~i~~~~~~tp~t~~~~ 494 (565)
+.+ ..| .|..+++.++...... .++. ...+++.+.+++.|.++|+. .. ...+...+ ..|...
T Consensus 494 -f~s-----~sp~~G~pVLvafv~Gd~A~----~le~-lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~iv---trW~~D 559 (881)
T PLN03000 494 -FYS-----YAPVAGGPLLIALVAGEAAH----KFET-MPPTDAVTRVLHILRGIYEPQGINVPDPLQTVC---TRWGGD 559 (881)
T ss_pred -EeC-----CCCCCCCcEEEEEecCchhH----Hhhc-CCHHHHHHHHHHHHHHHhCccccccCCceEEEE---ccCCCC
Confidence 211 223 4556666664322111 1222 24688899999999999852 21 12222222 235544
Q ss_pred cCCCCCccccccCCccccccCCCCCCCCCCCCCC--CCeEEcCCCCCCC--CCccCc--chHHHHHHHHHHhh
Q 038727 495 FGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPV--RGLYLCGSGSHPG--GGVMGA--PGRNAAHVVLQDFK 561 (565)
Q Consensus 495 ~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i--~~lylaG~~~~~g--~g~~~a--sg~~aa~~i~~~~~ 561 (565)
....|++.... +.+....+ ...+.|+ .+|||||+.+... +.+.|| ||++||++|+..+.
T Consensus 560 -PysrGSYS~~~--pG~~~~~~-----d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~ 624 (881)
T PLN03000 560 -PFSLGSYSNVA--VGASGDDY-----DILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAK 624 (881)
T ss_pred -CCCCccccCCC--CCCchHHH-----HHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhh
Confidence 34455433221 11111001 1224455 3799999998432 245688 99999999998764
No 23
>PLN02676 polyamine oxidase
Probab=99.94 E-value=1.6e-24 Score=224.44 Aligned_cols=243 Identities=17% Similarity=0.159 Sum_probs=148.9
Q ss_pred CCchHHHHHHHHHHHHHc------CcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhh--cCCCC
Q 038727 267 EGGMGSVSLAISKAATKA------GAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMG--LVPRD 338 (565)
Q Consensus 267 ~gG~~~l~~~l~~~l~~~------G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~--l~~~~ 338 (565)
+||+++|++.|++.+.++ +.+|++|++|++|..++ ++|. |.+.+|+++.||+||+|+|+..+ .. +...+
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~-~gV~-V~~~~G~~~~a~~VIvtvPl~vL-k~~~I~F~P 296 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK-NGVT-VKTEDGSVYRAKYVIVSVSLGVL-QSDLIKFKP 296 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC-CcEE-EEECCCCEEEeCEEEEccChHHh-ccCceEEeC
Confidence 689999999999877543 25799999999999987 7776 88999988999999999988774 43 54556
Q ss_pred CCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEE
Q 038727 339 VLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEM 418 (565)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 418 (565)
++|....+.++++.+ ....|+++.++++. |. .. +.. .++...+. ..+ ...++.
T Consensus 297 ~LP~~k~~ai~~l~~-g~~~Kv~l~f~~~F-W~-------~~-~~~--~~~~~~~~-----------~~~----~~~~~~ 349 (487)
T PLN02676 297 PLPDWKIEAIYQFDM-AVYTKIFLKFPYKF-WP-------SG-PGT--EFFLYAHE-----------RRG----YYPFWQ 349 (487)
T ss_pred CCCHHHHHHHHhCCc-eeeEEEEEEeCCCC-CC-------CC-CCc--eeeeeecc-----------ccc----cchhhh
Confidence 799988999999988 58999999999862 32 10 111 11110100 000 000111
Q ss_pred EcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC-CCCcEeEEEeCChhhHHHHcCC
Q 038727 419 TIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPG-FSSSVIGYDLLTPPDLEREFGL 497 (565)
Q Consensus 419 ~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~-~~~~i~~~~~~tp~t~~~~~~~ 497 (565)
. .|. .+++..++.++.. .+.. ..|+. ...++..+.+++.|.++|+. +.. ++.... .+|... ..
T Consensus 350 ~----~~~--~~~~~~~l~~~~~-g~~a---~~~~~-~s~e~~~~~vl~~L~~~~g~~~~~-p~~~~~---~~W~~d-p~ 413 (487)
T PLN02676 350 H----LEN--EYPGSNVLFVTVT-DEES---RRIEQ-QPDSETKAEIMEVLRKMFGPNIPE-ATDILV---PRWWSN-RF 413 (487)
T ss_pred h----ccc--CCCCCCEEEEEec-hHHH---HHHHh-CCHHHHHHHHHHHHHHHhCCCCCC-cceEEe---cccCCC-CC
Confidence 1 111 1234445555432 1110 01211 13577888999999999862 322 222211 245443 34
Q ss_pred CCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCC--CCccCc--chHHHHHHHHHHhhh
Q 038727 498 TGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPG--GGVMGA--PGRNAAHVVLQDFKK 562 (565)
Q Consensus 498 ~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g--~g~~~a--sg~~aa~~i~~~~~~ 562 (565)
..|+..... +.+.....+ ..+.|+.+|||||+.+... +-+.|| ||++||++|++.+..
T Consensus 414 s~Gsys~~~--pG~~~~~~~-----~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 414 FKGSYSNWP--IGVSRYEFD-----QIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred CCcccCCCC--CCCChhHHH-----HHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence 445432211 111110111 3456788999999998543 245687 999999999998754
No 24
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.94 E-value=1.7e-26 Score=240.67 Aligned_cols=238 Identities=28% Similarity=0.411 Sum_probs=141.7
Q ss_pred cCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCCCCCCHHHH
Q 038727 266 VEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPRDVLPDDFL 345 (565)
Q Consensus 266 ~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~ 345 (565)
..|+...+ +...+...|++|++|++|++|..++ +++. |.+.+|++++||+||+|+|+..+ .++.-.+.++....
T Consensus 207 ~~g~~~~~---~~~~~~~~g~~i~l~~~V~~I~~~~-~~v~-v~~~~g~~~~ad~VI~a~p~~~l-~~i~~~p~l~~~~~ 280 (450)
T PF01593_consen 207 GMGGLSLA---LALAAEELGGEIRLNTPVTRIERED-GGVT-VTTEDGETIEADAVISAVPPSVL-KNILLLPPLPEDKR 280 (450)
T ss_dssp ETTTTHHH---HHHHHHHHGGGEESSEEEEEEEEES-SEEE-EEETTSSEEEESEEEE-S-HHHH-HTSEEESTSHHHHH
T ss_pred cccchhHH---HHHHHhhcCceeecCCcceeccccc-cccc-cccccceEEecceeeecCchhhh-hhhhhccccccccc
Confidence 34444443 4444556678999999999999998 8877 88999989999999999999885 53222233777778
Q ss_pred HHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCC
Q 038727 346 RAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEMTIPSSLD 425 (565)
Q Consensus 346 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 425 (565)
+.++++.+ .+..+|++.++... |. .. ....+.+.. + ...+..++..++..+
T Consensus 281 ~a~~~~~~-~~~~~v~l~~~~~~-~~-------~~-~~~~~~~~~-~------------------~~~~~~~~~~~~~~~ 331 (450)
T PF01593_consen 281 RAIENLPY-SSVSKVFLGFDRPF-WP-------PD-IDFFGILYS-D------------------GFSPIGYVSDPSKFP 331 (450)
T ss_dssp HHHHTEEE-EEEEEEEEEESSGG-GG-------ST-TTESEEEEE-S------------------STSSEEEEEEECCTT
T ss_pred cccccccc-CcceeEEEeeeccc-cc-------cc-ccccceecc-c------------------CccccccccccccCc
Confidence 88888888 47789999999863 21 00 011223332 1 012344555555433
Q ss_pred CCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC-CCCcEeEEEeCChhhHHHHcCCCCCcccc
Q 038727 426 KTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPG-FSSSVIGYDLLTPPDLEREFGLTGGNIFH 504 (565)
Q Consensus 426 ~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~-~~~~i~~~~~~tp~t~~~~~~~~~G~~~g 504 (565)
+. ++..+++.++. .+.. ..+.. ..++++.+.+++.|++++|. .........+ ..|.+. ..+.|+...
T Consensus 332 ~~---~~~~~l~~~~~-~~~~---~~~~~-~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~---~~w~~~-~~~~~~~~~ 399 (450)
T PF01593_consen 332 GR---PGGGVLTSYVG-GPDA---PEWDD-LSDEEILERVLDDLRKILPGASIPDPIDITV---TRWSRD-PYPRGSYSY 399 (450)
T ss_dssp SC---TTSEEEEEEEE-HHHH---HHHTT-SCHHHHHHHHHHHHHHHHTTGGGGEESEEEE---EECTTS-TTTSSSCEC
T ss_pred cc---ccCCcceeeee-cccc---chhcc-cchhhhHHHHHHHhhhccccccccccccccc---cccccc-ccccccccc
Confidence 32 34454554432 2210 01222 25689999999999999995 1111211111 123331 222332221
Q ss_pred ccCCccccccCCCCCCCCCCCCCC-CCeEEcCCCCCCC--CCccCc--chHHHHHHHH
Q 038727 505 GAMGLDSLFLMRPVKGWSGYRTPV-RGLYLCGSGSHPG--GGVMGA--PGRNAAHVVL 557 (565)
Q Consensus 505 ~~~~~~~~~~~rp~~~~~~~~t~i-~~lylaG~~~~~g--~g~~~a--sg~~aa~~i~ 557 (565)
...... ...+| ..++|+ +||||||++++++ +|+++| ||++||++||
T Consensus 400 ~~~~~~--~~~~~-----~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 400 FPPGQS--SQFRP-----ALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp HCTTHH--HHHHH-----HHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccc--ccccc-----cccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 111111 01233 446677 7999999999887 688888 9999999986
No 25
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.93 E-value=1.3e-23 Score=217.21 Aligned_cols=401 Identities=16% Similarity=0.139 Sum_probs=215.7
Q ss_pred HHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCc--eeccchhhhhhhhh---hHhhhccccccCceeecCCCceeeec
Q 038727 34 IAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGF--KFSRCSYLQSLLRP---SVIRELELKKHGLKLLKPIATSFTPC 108 (565)
Q Consensus 34 ~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~--~~d~g~~~~~~~~~---~~~~~l~l~~~g~~~~~~~~~~~~~~ 108 (565)
+||++|+++|++|+|||+++++||++.|+. .+|+ .+|.|++++....+ +++++||++.. +.. +. .......
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~-~~~-~~-~~~~~~~ 76 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPR-LQG-PR-LPLPFYD 76 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccHHHHHHHHHhCCchh-hhc-cc-CCcceec
Confidence 589999999999999999999999999986 5655 49999987654444 57788877543 221 11 1111111
Q ss_pred CCCcEEEEcCC-h---HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhhhhhhhhhHHH
Q 038727 109 LDGLYLLLGFD-D---QQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLRDKMQKSVFW 184 (565)
Q Consensus 109 ~~g~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (565)
.++....+..+ . ......+..+.........+ +...+..+....
T Consensus 77 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~------------------------- 124 (419)
T TIGR03467 77 PGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLA-------LARALLALRRTR------------------------- 124 (419)
T ss_pred CCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHH-------HHHHHHHHHhcC-------------------------
Confidence 22221111110 0 00001111110000000000 000000000000
Q ss_pred HHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHHHhccC-CCCCCChhHHHHHHH--HhccccCCCc
Q 038727 185 ARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADAITGSM-ASIHAPGSGYVLLHH--VMGETDGDRN 261 (565)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~-~~~~~~~~~~~~~~~--~~~~~~~~~g 261 (565)
...+...++.+++++++.++.+...+....+.+.+ ..++..+..+..... .+.. .....
T Consensus 125 -----------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~ 186 (419)
T TIGR03467 125 -----------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLA-GRAAS 186 (419)
T ss_pred -----------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-CCCcc
Confidence 00123467888888877665555533322111111 123333322222111 1110 01112
Q ss_pred cccccCCchHHHH-HHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCCCCC
Q 038727 262 LWSHVEGGMGSVS-LAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPRDVL 340 (565)
Q Consensus 262 ~~~~~~gG~~~l~-~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~~~~ 340 (565)
.+.+++||++++. ++|++.+++.|++|++|++|++|..++ +++..+...+|+++.||+||+|+++..+ .+|++.+
T Consensus 187 ~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~-~~~~~~~~~~g~~~~~d~vi~a~p~~~~-~~ll~~~-- 262 (419)
T TIGR03467 187 DLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA-GGIRALVLSGGETLPADAVVLAVPPRHA-ASLLPGE-- 262 (419)
T ss_pred eeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC-CcceEEEecCCccccCCEEEEcCCHHHH-HHhCCCc--
Confidence 2448999987766 559999999999999999999999988 7765333346778999999999999885 7887642
Q ss_pred CHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEc
Q 038727 341 PDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEMTI 420 (565)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 420 (565)
...+.++++.|. ++.++++.++++. |. . ... ..+. . .+.-++..
T Consensus 263 --~~~~~l~~~~~~-~~~~v~l~~~~~~-~~-------~--~~~--~~~~-~--------------------~~~~~~~~ 306 (419)
T TIGR03467 263 --DLGALLTALGYS-PITTVHLRLDRAV-RL-------P--APM--VGLV-G--------------------GLAQWLFD 306 (419)
T ss_pred --hHHHHHhhcCCc-ceEEEEEEeCCCc-CC-------C--CCe--eeec-C--------------------CceeEEEE
Confidence 456678888884 7889999999863 21 0 011 1111 0 11112221
Q ss_pred CCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCC-CcEeEEEeCChhhHHHHcCCCC
Q 038727 421 PSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFS-SSVIGYDLLTPPDLEREFGLTG 499 (565)
Q Consensus 421 ~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tp~t~~~~~~~~~ 499 (565)
.+ ...++ ...+.+++... . .+.. ..++++.+.+++.|++++|... ..++...+. ....
T Consensus 307 ~~----~~~~~-~~~~~~~~~~~--~----~~~~-~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~---------~~~~ 365 (419)
T TIGR03467 307 RG----QLAGE-PGYLAVVISAA--R----DLVD-LPREELADRIVAELRRAFPRVAGAKPLWARVI---------KEKR 365 (419)
T ss_pred CC----cCCCC-CCEEEEEEecc--h----hhcc-CCHHHHHHHHHHHHHHhcCccccCCccceEEE---------EccC
Confidence 11 11111 23333332211 1 1111 1468999999999999999653 222222221 1111
Q ss_pred CccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCCCCCC--CccCc--chHHHHHHHHH
Q 038727 500 GNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPGG--GVMGA--PGRNAAHVVLQ 558 (565)
Q Consensus 500 G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g~--g~~~a--sg~~aa~~i~~ 558 (565)
+ .|...... ...+| ..++|++|||||||++++|. .+.|| ||..||++|++
T Consensus 366 ~-~~~~~~g~---~~~~~-----~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 366 A-TFAATPGL---NRLRP-----GARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred C-ccccCCcc---cccCC-----CCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 1 22211111 11344 34678999999999997641 33466 99999999874
No 26
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=4.1e-23 Score=210.98 Aligned_cols=239 Identities=18% Similarity=0.206 Sum_probs=144.1
Q ss_pred cccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhh--cCCCCCCC
Q 038727 264 SHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMG--LVPRDVLP 341 (565)
Q Consensus 264 ~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~--l~~~~~~~ 341 (565)
....+|+..+...++. |.+|++++.|.+|...+ +....+++.+++.+.+|.||++++...+ .. +...+++|
T Consensus 212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~~~~~~~~~~~~~~d~vvvt~pl~vL-k~~~i~F~P~Lp 284 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGAVKVTVETGDGYEADAVVVTVPLGVL-KSGLIEFSPPLP 284 (501)
T ss_pred hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCceEEEEECCCeeEeeEEEEEccHHHh-ccCceeeCCCCc
Confidence 3567888888888865 88999999999999887 4423466666667999999999998875 44 44567799
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcC
Q 038727 342 DDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEMTIP 421 (565)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 421 (565)
..+.++|+++.. ..+.+|.+.++..- |. +.....+ ..+... .... ++ .+.
T Consensus 285 ~~k~~aI~~lg~-g~~~Kv~l~F~~~f-W~--------~~~d~fg--~~~~~~----------------~~~~-~~-~f~ 334 (501)
T KOG0029|consen 285 RWKQEAIDRLGF-GLVNKVILEFPRVF-WD--------QDIDFFG--IVPETS----------------VLRG-LF-TFY 334 (501)
T ss_pred HHHHHHHHhcCC-CceeEEEEEecccc-CC--------CCcCeEE--Eccccc----------------cccc-hh-hhh
Confidence 999999999997 48899999998752 31 1111111 111110 0000 00 111
Q ss_pred CCCCCCCCC-CCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC--CCCcEeEEEeCChhhHHHHcCCC
Q 038727 422 SSLDKTISP-PGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPG--FSSSVIGYDLLTPPDLEREFGLT 498 (565)
Q Consensus 422 ~~~d~~~~p-~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~--~~~~i~~~~~~tp~t~~~~~~~~ 498 (565)
+ ..| .|..+++..+...... .+.. ..+++..+.+...|+++|+. ..+.+... +. .|... ...
T Consensus 335 ~-----~~~~~~~~~l~~~~~~~~a~----~~~~-~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~-vt---~w~~d-~~~ 399 (501)
T KOG0029|consen 335 D-----CKPVAGHPVLMSVVVGEAAE----RVET-LSDSEIVKKAMKLLRKVFGSEEVPDPLDAL-VT---RWGTD-PLS 399 (501)
T ss_pred h-----cCccCCCCeEEEEehhhhhH----HHhc-CCHHHHHHHHHHHHHHHhccCcCCCcccee-ee---eeccc-ccC
Confidence 1 112 1222344432211111 1222 26789999999999999982 22222222 11 23332 334
Q ss_pred CCccccccCCccccccCCCCCCCCCCCCCCCC-eEEcCCCCCCC--CCccCc--chHHHHHHHHHHhh
Q 038727 499 GGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRG-LYLCGSGSHPG--GGVMGA--PGRNAAHVVLQDFK 561 (565)
Q Consensus 499 ~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~-lylaG~~~~~g--~g~~~a--sg~~aa~~i~~~~~ 561 (565)
.|+.+..... -|...+...+.|+.| +||||..+.-. +-+.|| ||.+||..|+..+.
T Consensus 400 ~gsys~~~~~-------~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 400 GGSYSYVAVG-------SDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred CccccccCCC-------CChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 4444332221 111112244678999 99999998321 255677 99999999998875
No 27
>PLN02976 amine oxidase
Probab=99.92 E-value=2.1e-22 Score=219.01 Aligned_cols=243 Identities=14% Similarity=0.114 Sum_probs=147.0
Q ss_pred cccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecC---------CCceeEEEeCCCcEEecCEEEECCChHHHHh--
Q 038727 264 SHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGD---------SGEVDGVLLVDGTRVHSSFVLSNATPYKTFM-- 332 (565)
Q Consensus 264 ~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~---------~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~-- 332 (565)
..+.||++.|+++|++.+ .|++|++|++|...+ +++|. |.+.+|+++.||+||+|+|+..+ .
T Consensus 929 ~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVt-VtTsDGetftADaVIVTVPLGVL-Kag 1001 (1713)
T PLN02976 929 CMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVK-VSTSNGSEFLGDAVLITVPLGCL-KAE 1001 (1713)
T ss_pred EEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEE-EEECCCCEEEeceEEEeCCHHHh-hhc
Confidence 368999999999998765 499999999998841 13454 88889988999999999998874 3
Q ss_pred hcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCC
Q 038727 333 GLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSR 412 (565)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 412 (565)
.+...++||....++|+++.+ ..+.++++.++++ .|. .. ....+... .+ .+.
T Consensus 1002 ~I~FsPPLPe~KqaAIqrLgf-G~lnKV~LeFdrp-FW~-------~d-~d~FG~s~--ed----------------tdl 1053 (1713)
T PLN02976 1002 TIKFSPPLPDWKYSSIQRLGF-GVLNKVVLEFPEV-FWD-------DS-VDYFGATA--EE----------------TDL 1053 (1713)
T ss_pred ccccCCcccHHHHHHHHhhcc-ccceEEEEEeCCc-ccc-------CC-CCcccccc--cc----------------CCC
Confidence 355567799999999999998 4899999999885 242 10 11111000 00 001
Q ss_pred CCeEEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC-CCcEeEEEeCChhhH
Q 038727 413 RPVMEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGF-SSSVIGYDLLTPPDL 491 (565)
Q Consensus 413 ~~~~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~-~~~i~~~~~~tp~t~ 491 (565)
...+++..+ ...+.|..+++.++...... .++. ...+++.+.+++.|.++|++- ...++...+ ..|
T Consensus 1054 rG~~~~~wn-----lr~psG~pVLVafv~G~aAr----eiEs-LSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vv---TrW 1120 (1713)
T PLN02976 1054 RGQCFMFWN-----VKKTVGAPVLIALVVGKAAI----DGQS-MSSSDHVNHALMVLRKLFGEALVPDPVASVV---TDW 1120 (1713)
T ss_pred CceEEEecc-----CCCCCCCCEEEEEeccHhHH----HHhh-CCHHHHHHHHHHHHHHHcCcccccCcceeEE---ecC
Confidence 122233221 12244556666553221110 1211 145788899999999999742 122322222 135
Q ss_pred HHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCC-eEEcCCCCCCC-C-CccCc--chHHHHHHHHHHhhh
Q 038727 492 EREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRG-LYLCGSGSHPG-G-GVMGA--PGRNAAHVVLQDFKK 562 (565)
Q Consensus 492 ~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~-lylaG~~~~~g-~-g~~~a--sg~~aa~~i~~~~~~ 562 (565)
... +...|++... .+.+....+. ....|+.| |||||+.+... . -+.|| ||++||.+|+..+..
T Consensus 1121 ssD-PySrGSYSy~--~PGs~~~d~d-----~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1121 GRD-PFSYGAYSYV--AIGASGEDYD-----ILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred CCC-CCcCccccCC--CCCCCchHHH-----HHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 443 3344543111 1111100010 23456777 99999987442 2 34577 999999999988743
No 28
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.90 E-value=3.7e-21 Score=186.19 Aligned_cols=254 Identities=20% Similarity=0.225 Sum_probs=144.6
Q ss_pred ccCCchHHHHHHHHHHHHHc----C--cEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhh---cC
Q 038727 265 HVEGGMGSVSLAISKAATKA----G--AHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMG---LV 335 (565)
Q Consensus 265 ~~~gG~~~l~~~l~~~l~~~----G--~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~---l~ 335 (565)
...-|+..+.+.|+..+.+. | .+++++++|.+|..++.+++. |++.||+.++||+||||++...+ .+ -+
T Consensus 217 ~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~-l~c~dg~v~~adhVIvTvsLGvL-k~~h~~l 294 (498)
T KOG0685|consen 217 WNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVK-LRCSDGEVFHADHVIVTVSLGVL-KEQHHKL 294 (498)
T ss_pred echhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEE-EEEeCCcEEeccEEEEEeechhh-hhhhhhh
Confidence 45667888888888766543 2 356677999999987635555 99999999999999999987763 33 13
Q ss_pred CCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCe
Q 038727 336 PRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPV 415 (565)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 415 (565)
..+++|....++|+++.++ .+-|+|+.+.+++ |. .+ .... +++..++..+++...- +.+ -+ ..
T Consensus 295 F~P~LP~~K~~AIe~lgfG-tv~KiFLE~E~pf-wp-------~~-~~~i-~~lw~~e~l~e~r~~~-~~w----~~-~~ 357 (498)
T KOG0685|consen 295 FVPPLPAEKQRAIERLGFG-TVNKIFLEFEEPF-WP-------SD-WNGI-QLLWLDEDLEELRSTL-DAW----EE-DI 357 (498)
T ss_pred cCCCCCHHHHHHHHhccCC-ccceEEEEccCCC-CC-------CC-Ccee-EEEEecCcHHHHhhhh-HHH----Hh-hc
Confidence 3466999999999999995 8999999999874 42 11 1111 2222232234443221 111 11 11
Q ss_pred EEEEcCCCCCCCCCCCCccEEEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCCcEeEEEeCChhhHHH--
Q 038727 416 MEMTIPSSLDKTISPPGKHVVSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFSSSVIGYDLLTPPDLER-- 493 (565)
Q Consensus 416 ~~~~~~~~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~t~~~-- 493 (565)
+...+.. .+| .++...+.+. +...-..-..+++.+.+...|.++..+++ +--|..+-|
T Consensus 358 -~~f~~v~----~~~---~vL~gWiaG~-----~~~~me~lsdEev~e~~~~~lr~fl~n~~-------iP~p~kilRs~ 417 (498)
T KOG0685|consen 358 -MGFQPVS----WAP---NVLLGWIAGR-----EARHMETLSDEEVLEGLTKLLRKFLKNPE-------IPKPKKILRSQ 417 (498)
T ss_pred -eEEEEcC----cch---hhhheeccCC-----cceehhhCCHHHHHHHHHHHHHHhcCCCC-------CCCchhhhhhc
Confidence 1222221 122 3344432211 10111112457888888888888765432 011111111
Q ss_pred Hc--CCCCCccccccCC-----ccccccCCCCCCCCCCCCCCCCeEEcCCCCCCC--CCccCc--chHHHHHHHHHHhh
Q 038727 494 EF--GLTGGNIFHGAMG-----LDSLFLMRPVKGWSGYRTPVRGLYLCGSGSHPG--GGVMGA--PGRNAAHVVLQDFK 561 (565)
Q Consensus 494 ~~--~~~~G~~~g~~~~-----~~~~~~~rp~~~~~~~~t~i~~lylaG~~~~~g--~g~~~a--sg~~aa~~i~~~~~ 561 (565)
|. ....|++.-.+.. .+.+..-.|. ...++-|.+-|||..+|-- .-+.|| ||++.|++++..+.
T Consensus 418 W~snp~frGSYSY~svgs~~~d~~~~a~p~p~----~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~ 492 (498)
T KOG0685|consen 418 WISNPFFRGSYSYRSVGSDGSDTGALALPLPL----TLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYE 492 (498)
T ss_pred ccCCCccCceeeEeeccccccccchhhccCCc----cccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHH
Confidence 11 2233443221111 1111112231 2345668899999999643 344577 99999999998553
No 29
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.88 E-value=6e-20 Score=186.07 Aligned_cols=332 Identities=15% Similarity=0.191 Sum_probs=187.2
Q ss_pred CCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeeccc-------C------------CCceeccchhhhh
Q 038727 18 DKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEEL-------I------------PGFKFSRCSYLQS 78 (565)
Q Consensus 18 ~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~-------~------------~G~~~d~g~~~~~ 78 (565)
+++|||||||+|++|+.+|..|+++|++|+++|++++.||++.|+.. . ..|-.|..+.+.-
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 45799999999999999999999999999999999999999998631 0 0111222221110
Q ss_pred h--hhhhHhhhccccccCceeecCCCceeeecCCCcEEEEcCChH-HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHh
Q 038727 79 L--LRPSVIRELELKKHGLKLLKPIATSFTPCLDGLYLLLGFDDQ-QNNSEISKFSKRDADTYPRYENELSKFCKIMDFL 155 (565)
Q Consensus 79 ~--~~~~~~~~l~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (565)
. ..-.++...++.++ +++...+..+ ++..+|+....+.... .....+..+. +...+.+|...+.+ .
T Consensus 82 ~~G~lv~lL~~s~v~ry-leF~~l~g~~-v~~~~g~~~~vP~s~~~~~~s~ll~l~--eKr~l~kfl~~v~~-------~ 150 (443)
T PTZ00363 82 ASGELVKILLHTDVTRY-LEFKVIDGSY-VYQKEGKIHKVPATDMEALSSPLMGFF--EKNRCKNFLQYVSN-------Y 150 (443)
T ss_pred cCChHHHHHhhcCccce-eeeEEeceEE-EEecCCeEEECCCCHHHHhhCCCcchh--hHHHHHHHHHHHHh-------h
Confidence 0 11135556677776 7776655322 2214565555554322 1111111111 11222222222211 1
Q ss_pred hcCCCCCCcCCCchhhhhhhhhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHH-HHhc
Q 038727 156 LDSPPPEALHGDLSFHDLLRDKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAAD-AITG 234 (565)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~g 234 (565)
.... ++... -..+...++.++++++..++..+.++... .+..
T Consensus 151 ~~~~-~~~~~------------------------------------~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~ 193 (443)
T PTZ00363 151 DEND-PETHK------------------------------------GLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYT 193 (443)
T ss_pred ccCC-hhhhc------------------------------------ccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 0000 00000 00012467888888888888777765422 1211
Q ss_pred cCCCCCCCh-hHHH-HHHHHhccccCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC
Q 038727 235 SMASIHAPG-SGYV-LLHHVMGETDGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD 312 (565)
Q Consensus 235 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~ 312 (565)
.......+. ..+. +..+......+....+.||.||++.|+++|++.++..|++++++++|++|..++++++.+|++.+
T Consensus 194 ~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~ 273 (443)
T PTZ00363 194 NDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEG 273 (443)
T ss_pred ccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECC
Confidence 100111121 1111 11111100111223345899999999999999999999999999999999887536788899999
Q ss_pred CcEEecCEEEECCChHHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCC
Q 038727 313 GTRVHSSFVLSNATPYKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGC 392 (565)
Q Consensus 313 G~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (565)
|+++.|+.||++..... . . ++ ....+....+.++.+..-. . ..+..+|.+++
T Consensus 274 Ge~i~a~~VV~~~s~~p-------~-----~----~~---~~~~v~R~i~i~~~pi~~~-------~--~~~~~~i~~P~ 325 (443)
T PTZ00363 274 GEVAKCKLVICDPSYFP-------D-----K----VK---KVGKVIRCICILNHPIPNT-------N--NANSCQIIIPQ 325 (443)
T ss_pred CcEEECCEEEECccccc-------c-----c----cc---cccEEEEEEEEEccccccc-------C--cCccEEEEECC
Confidence 99999999999654321 1 0 01 1124555555666653110 0 11222566644
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCccEEEEEcc
Q 038727 393 ESMEEIGSACQDAWNGLPSRRPVMEMTIPSSLDKTISPPGKHVVSLFTQ 441 (565)
Q Consensus 393 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~p~G~~~v~~~~~ 441 (565)
. ++.+.+.+++.+-+. +...+|.|+.++.+++.
T Consensus 326 ~---------------~~~~~~~i~v~~~s~-~~~~cp~g~~i~~~st~ 358 (443)
T PTZ00363 326 K---------------QLGRKNDIYIMLVSS-NHGVCPKGKYIAIISTT 358 (443)
T ss_pred c---------------ccCCCCCEEEEEecC-CCCcCCCCcEEEEEEEe
Confidence 2 223455677766543 34568999999888753
No 30
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=4.7e-20 Score=182.64 Aligned_cols=440 Identities=17% Similarity=0.160 Sum_probs=236.3
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhhhhhhHhhh---ccccccCcee
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSVIRE---LELKKHGLKL 97 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~~~~~~~~~---l~l~~~g~~~ 97 (565)
.+|+|+|||++||+||++|+++|++|+|+|+++++||.+.+....+|...|.|-|+|...++.+++. ++.++. +.+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~-~~~ 79 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDR-LQL 79 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchhe-eeh
Confidence 3799999999999999999999999999999999999999998889999999999988888765544 433322 222
Q ss_pred ecCCCceee-ecCCCcEEEEcCChHHHHHHHhccchhhh-hhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCCchhhhhhh
Q 038727 98 LKPIATSFT-PCLDGLYLLLGFDDQQNNSEISKFSKRDA-DTYPRYENELSKFCKIMDFLLDSPPPEALHGDLSFHDLLR 175 (565)
Q Consensus 98 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (565)
......+.. ....|.. ..+.+. .. ..+... ..++..+ . .
T Consensus 80 ~~~~~~~~~~~~~~g~~-----------~~~~~~---~~p~p~~~~-----------~~~l~~~--~-----~------- 120 (485)
T COG3349 80 REHTKTFVGSGTRPGAI-----------GRFARP---DAPQPTNGL-----------KAFLRLP--Q-----L------- 120 (485)
T ss_pred HhhhhhhcccCCCCCcc-----------cccccC---CCCCcchhh-----------hhhhhcc--c-----c-------
Confidence 111110000 0000100 000000 00 000000 0000000 0 0
Q ss_pred hhhhhhHHHHHHHHHhhhcCcc---cHHHHHHHHhccHHHHHHcccC-ChHHHHHHHHHHHhccCCCCCCChhHHHHH--
Q 038727 176 DKMQKSVFWARCLRHVLSLGQK---DLVDFMDILLSPTTKILNKWFE-SDVLKATVAADAITGSMASIHAPGSGYVLL-- 249 (565)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~-- 249 (565)
.+...+...++.... ..+...++...+.++++.+.-. ....++.+....+-+.+..++..++...+.
T Consensus 121 -------~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~ 193 (485)
T COG3349 121 -------PRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTIL 193 (485)
T ss_pred -------CHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHH
Confidence 000011111122111 2445666778899999998543 345666666655555555555554432221
Q ss_pred HHHhccccCCCccccccCCch-HHHHHHHHHHHHHcCcEEEeCcceeEEEecC---CCceeEEEeCCCcE---EecCEEE
Q 038727 250 HHVMGETDGDRNLWSHVEGGM-GSVSLAISKAATKAGAHILVNTEVSQIMIGD---SGEVDGVLLVDGTR---VHSSFVL 322 (565)
Q Consensus 250 ~~~~~~~~~~~g~~~~~~gG~-~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~---~~~v~~V~~~~G~~---~~ad~VI 322 (565)
...+..+....-.+ ...|+. ..+...+.+.+++.|.+++++.+|++|..+. ..++.++.+. +.. ..++.++
T Consensus 194 ~~~~~~~~~~~i~~-~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~ 271 (485)
T COG3349 194 NLFLIVTLEASILR-NLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVV 271 (485)
T ss_pred HHHHHhccCcchhh-hhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhh
Confidence 11111111111122 345554 4578888999999999999999999998653 2457777776 433 4445566
Q ss_pred ECCChHHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHH
Q 038727 323 SNATPYKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSAC 402 (565)
Q Consensus 323 ~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (565)
...+... +...++.+.-+....+.+..... .++.++++.++....+.- +. .+ .-++.+.+
T Consensus 272 ~~~~v~~-~~~~~ps~W~~~~~f~~ly~l~~-~p~~~~~l~~~~~~~~~~------~~--~~--~~~~dn~~-------- 331 (485)
T COG3349 272 DAFAVQR-FKRDLPSEWPKWSNFDGLYGLRL-VPVITLHLRFDGWVTELT------DR--NQ--QFGIDNLL-------- 331 (485)
T ss_pred cccccch-HhhcCcccccccccccccccccc-cceeEEEEeecCcccccc------cc--ch--hhhhhccc--------
Confidence 6555555 35566555433555556655544 578888888876432110 00 00 00000000
Q ss_pred HHhhcCCCCCCCeEEEEcCCCCCCCCCCCCccE-EEEEcccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCC-cE
Q 038727 403 QDAWNGLPSRRPVMEMTIPSSLDKTISPPGKHV-VSLFTQYTPYKPSDGSWEDPTYRESYAQKCFSLIDEYAPGFSS-SV 480 (565)
Q Consensus 403 ~~~~~g~~~~~~~~~~~~~~~~d~~~~p~G~~~-v~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~-~i 480 (565)
+. .......+.-.+...+ ....+|... +.... .|- ..|.. ...+++.....+.+...+|...+ .+
T Consensus 332 ---~s--~~~l~~~~ad~~~~~~-~y~e~g~~~~le~~~--~~~----~~~~~-~~~~~~~a~~e~~~~~~vP~~~~a~~ 398 (485)
T COG3349 332 ---WS--DDTLGGVVADLALTSP-DYVEPGAGCYLEKVL--APG----WPFLF-ESDEAIVATFEKELYELVPSLAEAKL 398 (485)
T ss_pred ---cc--cccCCceeeeccccch-hhccccchhhhhhhh--ccc----ccccc-cchhhHHHHHHHHhhhcCCchhcccc
Confidence 00 0111222222222221 233344321 11110 111 12332 25688888888899988887643 22
Q ss_pred eEEEeCChhhHHHHcCCCCCccccccCCccccccCCCCCCCCCCCCCCCCeEEcCCCC-CCCC-CccCc--chHHHHHHH
Q 038727 481 IGYDLLTPPDLEREFGLTGGNIFHGAMGLDSLFLMRPVKGWSGYRTPVRGLYLCGSGS-HPGG-GVMGA--PGRNAAHVV 556 (565)
Q Consensus 481 ~~~~~~tp~t~~~~~~~~~G~~~g~~~~~~~~~~~rp~~~~~~~~t~i~~lylaG~~~-~~g~-g~~~a--sg~~aa~~i 556 (565)
....+.++... ++..... ...|| ...||++||+++||++ .+.. .+++| ||+.||+.|
T Consensus 399 ~~~~i~~~q~~-----------~~~~pgs---~~~rP-----~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v 459 (485)
T COG3349 399 KSSVLVNQQSL-----------YGLAPGS---YHYRP-----EQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAI 459 (485)
T ss_pred cccceeccccc-----------cccCCCc---cccCC-----CCCCCccchhhccceeecCCcCccchhhhhHHHHHHHH
Confidence 22222222221 2211111 13588 7899999999999998 3432 33455 999999999
Q ss_pred HHHhh
Q 038727 557 LQDFK 561 (565)
Q Consensus 557 ~~~~~ 561 (565)
+..+.
T Consensus 460 ~~~~~ 464 (485)
T COG3349 460 LDNLG 464 (485)
T ss_pred HHhhh
Confidence 97654
No 31
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.86 E-value=1.7e-19 Score=171.60 Aligned_cols=241 Identities=18% Similarity=0.167 Sum_probs=149.3
Q ss_pred ccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCcee-EEEeCCCc-EEecCEEEECCChHHHHhhcCCCCCCCH
Q 038727 265 HVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVD-GVLLVDGT-RVHSSFVLSNATPYKTFMGLVPRDVLPD 342 (565)
Q Consensus 265 ~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~-~V~~~~G~-~~~ad~VI~a~~~~~~~~~l~~~~~~~~ 342 (565)
..+||.+.+++++.+.+.+..+.|.+..++..+.....+++. +.+..+++ ....++++.+.++.. +.+|++. ..+
T Consensus 243 sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k-~a~ll~~--~~~ 319 (491)
T KOG1276|consen 243 SLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVK-LAKLLRG--LQN 319 (491)
T ss_pred hhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHH-hhhhccc--cch
Confidence 579999999999999999999999999999999765424433 23334443 344455666777776 5899887 566
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeCCCCHHHHHHHHHHhhcCCCCCCCeEEEEcCC
Q 038727 343 DFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIGCESMEEIGSACQDAWNGLPSRRPVMEMTIPS 422 (565)
Q Consensus 343 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 422 (565)
.....+.++.| .++.+|.+-+.++. . +.+...+|.++..+.. .....+-+.+.+
T Consensus 320 sls~~L~ei~y-~~V~vVn~~yp~~~-~--------~~pl~GFG~LvPs~~~----------------~~~~~LG~ifdS 373 (491)
T KOG1276|consen 320 SLSNALSEIPY-VPVAVVNTYYPKEK-I--------DLPLQGFGLLVPSEPK----------------NGFKTLGTIFDS 373 (491)
T ss_pred hhhhhhhcCCC-CceEEEEEeccCcc-c--------ccccccceeeccCCCC----------------CCCceeEEEeec
Confidence 77888999988 58888888887642 0 1122334444431110 123445555556
Q ss_pred CCCCCCCCCCccEEEEEcccccCCCCCCCCC-ChhHHHHHHHHHHHHHHHhCCCCCCcEeEEEeCChhhHHHHcCCCCCc
Q 038727 423 SLDKTISPPGKHVVSLFTQYTPYKPSDGSWE-DPTYRESYAQKCFSLIDEYAPGFSSSVIGYDLLTPPDLEREFGLTGGN 501 (565)
Q Consensus 423 ~~d~~~~p~G~~~v~~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~t~~~~~~~~~G~ 501 (565)
...|.+.|.+...+++... .++ .|. ...+.+|+.+.+.+.|.++. ++++......+. -|.+ ..|+..
T Consensus 374 ~~Fp~~~~s~~vtvm~gg~--~~~----n~~~~~~S~ee~~~~v~~alq~~L-gi~~~P~~~~v~---l~~~--ciPqy~ 441 (491)
T KOG1276|consen 374 MLFPDRSPSPKVTVMMGGG--GST----NTSLAVPSPEELVNAVTSALQKML-GISNKPVSVNVH---LWKN--CIPQYT 441 (491)
T ss_pred ccCCCCCCCceEEEEeccc--ccc----cCcCCCCCHHHHHHHHHHHHHHHh-CCCCCcccccce---ehhh--ccccee
Confidence 5566667766666665432 111 111 12367999999999999987 565544433321 1222 244444
Q ss_pred cccccCCccccccCCCCCCCCCCCCCC--CCeEEcCCCCCCCCCccCc--chHHHHHHHH
Q 038727 502 IFHGAMGLDSLFLMRPVKGWSGYRTPV--RGLYLCGSGSHPGGGVMGA--PGRNAAHVVL 557 (565)
Q Consensus 502 ~~g~~~~~~~~~~~rp~~~~~~~~t~i--~~lylaG~~~~~g~g~~~a--sg~~aa~~i~ 557 (565)
+.|.. .... .+ ..-+.. .+|+++|.+. .|.++..| +|+.+|.+++
T Consensus 442 vGh~~-~le~---a~------~~l~~~~g~~l~l~G~~y-~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 442 VGHDD-VLEA---AK------SMLTDSPGLGLFLGGNHY-GGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred cchHH-HHHH---HH------HHHHhCCCCceEeecccc-CCCChhHHHHhhHHHHHhhc
Confidence 43322 1110 01 112223 4899999998 56777766 9999998875
No 32
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.82 E-value=2.1e-19 Score=160.86 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=73.0
Q ss_pred ccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC-cEEecCEEEECCChHHHHhhcCCC--CCCC
Q 038727 265 HVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG-TRVHSSFVLSNATPYKTFMGLVPR--DVLP 341 (565)
Q Consensus 265 ~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G-~~~~ad~VI~a~~~~~~~~~l~~~--~~~~ 341 (565)
.-.-||.+|++.|+..+ +|+++++|++|...+ +..+ +.+++| +...+|.||+++|.+.+ ..|+.. ..+|
T Consensus 102 vg~pgmsalak~LAtdL-----~V~~~~rVt~v~~~~-~~W~-l~~~~g~~~~~~d~vvla~PAPQ~-~~LLt~~~~~~p 173 (331)
T COG3380 102 VGEPGMSALAKFLATDL-----TVVLETRVTEVARTD-NDWT-LHTDDGTRHTQFDDVVLAIPAPQT-ATLLTTDADDLP 173 (331)
T ss_pred ccCcchHHHHHHHhccc-----hhhhhhhhhhheecC-CeeE-EEecCCCcccccceEEEecCCCcc-hhhcCcccccch
Confidence 33557888888776554 689999999999886 7666 888655 46889999999999997 567644 5578
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCC
Q 038727 342 DDFLRAIKYSDYHSGVTKINVAVDKL 367 (565)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~v~~~~~~~ 367 (565)
..++..+..+.|. +++.+.+++..+
T Consensus 174 ~~l~~~~a~V~y~-Pc~s~~lg~~q~ 198 (331)
T COG3380 174 AALRAALADVVYA-PCWSAVLGYPQP 198 (331)
T ss_pred HHHHHhhccceeh-hHHHHHhcCCcc
Confidence 8899999998884 777777777654
No 33
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.81 E-value=3.5e-18 Score=158.21 Aligned_cols=286 Identities=16% Similarity=0.155 Sum_probs=154.1
Q ss_pred cCCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecc---cCCCceeccchhhhhh-hhh---hHhhhcc
Q 038727 17 KDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEE---LIPGFKFSRCSYLQSL-LRP---SVIRELE 89 (565)
Q Consensus 17 ~~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~---~~~G~~~d~g~~~~~~-~~~---~~~~~l~ 89 (565)
.....+|+|||+|++||+||+.|++. ++|++||++.++||.++|.. .-.|+..|+|..+... .+| .+++++|
T Consensus 5 ~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iG 83 (447)
T COG2907 5 PHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIG 83 (447)
T ss_pred CCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcC
Confidence 44567899999999999999999987 89999999999999999874 3456778888876543 455 5677775
Q ss_pred ccccCceeecCCCceeeecCCCcEEEEcCC--hHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCcCCC
Q 038727 90 LKKHGLKLLKPIATSFTPCLDGLYLLLGFD--DQQNNSEISKFSKRDADTYPRYENELSKFCKIMDFLLDSPPPEALHGD 167 (565)
Q Consensus 90 l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (565)
. +..+.+..+.+...+| .+.+... .......-.. -....+..+..++-++... ...+......+
T Consensus 84 v-----~t~as~Msf~v~~d~g-glEy~g~tgl~~L~aqk~n---~l~pRf~~mlaeiLrf~r~----~~~~~d~~~~~- 149 (447)
T COG2907 84 V-----DTKASFMSFSVSLDMG-GLEYSGLTGLAGLLAQKRN---LLRPRFPCMLAEILRFYRS----DLAPSDNAGQG- 149 (447)
T ss_pred C-----CCcccceeEEEEecCC-ceeeccCCCccchhhcccc---ccchhHHHHHHHHHHHhhh----hccchhhhcCC-
Confidence 4 4444444443333332 2222221 0100000000 0111222222222222111 00100000000
Q ss_pred chhhhhhhhhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHHHHhccCCCCCCChhHHH
Q 038727 168 LSFHDLLRDKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAADAITGSMASIHAPGSGYV 247 (565)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 247 (565)
...+..|. ....+.+.+.+.+.-|...+.++.... ..-.-|.+.+.
T Consensus 150 ----------------------------~~tl~~~L--~~~~f~~af~e~~l~P~~aaiwstp~~----d~~~~pa~~~~ 195 (447)
T COG2907 150 ----------------------------DTTLAQYL--KQRNFGRAFVEDFLQPLVAAIWSTPLA----DASRYPACNFL 195 (447)
T ss_pred ----------------------------CccHHHHH--HhcCccHHHHHHhHHHHHHHHhcCcHh----hhhhhhHHHHH
Confidence 01111111 011112222222222222222211100 00001111111
Q ss_pred HH--HHHhccccCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECC
Q 038727 248 LL--HHVMGETDGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNA 325 (565)
Q Consensus 248 ~~--~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~ 325 (565)
.+ ++-+. ....+..|..+.||+...++.|...+ +++|.++++|.+|..-. +++. |+..+|+.-++|+||.++
T Consensus 196 ~f~~nhGll-~l~~rp~wrtV~ggS~~yvq~laa~~---~~~i~t~~~V~~l~rlP-dGv~-l~~~~G~s~rFD~vViAt 269 (447)
T COG2907 196 VFTDNHGLL-YLPKRPTWRTVAGGSRAYVQRLAADI---RGRIETRTPVCRLRRLP-DGVV-LVNADGESRRFDAVVIAT 269 (447)
T ss_pred HHHhccCce-ecCCCCceeEcccchHHHHHHHhccc---cceeecCCceeeeeeCC-CceE-EecCCCCccccceeeeec
Confidence 11 11111 13456688888999988888886544 57899999999999877 5555 556679888999999999
Q ss_pred ChHHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEE
Q 038727 326 TPYKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKI 360 (565)
Q Consensus 326 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v 360 (565)
.+... ..|+++ -.++-.+.+.++.|+....++
T Consensus 270 h~dqA-l~mL~e--~sp~e~qll~a~~Ys~n~aVl 301 (447)
T COG2907 270 HPDQA-LALLDE--PSPEERQLLGALRYSANTAVL 301 (447)
T ss_pred ChHHH-HHhcCC--CCHHHHHHHHhhhhhhceeEE
Confidence 99996 467665 345556789999996443333
No 34
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.65 E-value=1.4e-14 Score=148.10 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=54.9
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHC----CCcEEEEcccCCCCCeeeecc-cCCCceeccchhhhhhhhhhHhhhc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARG----GLSVAVLERRHVIGGAAVTEE-LIPGFKFSRCSYLQSLLRPSVIREL 88 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~-~~~G~~~d~g~~~~~~~~~~~~~~l 88 (565)
.+.+|+|||||++||+||++|++. |++|+|||+++.+||++.+.. ...||.++.|... ....+.+++.+
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~~y~~l~~ll 94 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-ENHFECLWDLF 94 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cchHHHHHHHH
Confidence 357899999999999999999996 689999999999999998743 3579999988764 33344444433
No 35
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.52 E-value=1.4e-12 Score=130.63 Aligned_cols=330 Identities=18% Similarity=0.221 Sum_probs=167.9
Q ss_pred CCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccC-------C-------------Cceeccchhhh
Q 038727 18 DKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELI-------P-------------GFKFSRCSYLQ 77 (565)
Q Consensus 18 ~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~-------~-------------G~~~d~g~~~~ 77 (565)
+.+|||||+|.|+.-...|..|++.|++|+.+|+|++.||...++... . .|.+|..+.++
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 467999999999999999999999999999999999999998876511 0 11122211111
Q ss_pred hhhhh---hHhhhccccccCceeecCCCceeeecCCCcEEEEcCChHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Q 038727 78 SLLRP---SVIRELELKKHGLKLLKPIATSFTPCLDGLYLLLGFDDQQNNSEISKFSKRDADTYPRYENELSKFCKIMDF 154 (565)
Q Consensus 78 ~~~~~---~~~~~l~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (565)
- ... +++-.-++.++ +++...+..+ .+.+++...++......... ..+...+...+. ++...+..
T Consensus 82 ~-a~g~LV~lLi~S~V~rY-LEFk~V~~~~--v~~~~~l~kVP~sr~dvf~s-~~lsl~eKR~lm-------kFl~~v~~ 149 (438)
T PF00996_consen 82 Y-ARGPLVKLLISSGVTRY-LEFKAVDGSY--VYKNGKLHKVPCSREDVFKS-KLLSLFEKRRLM-------KFLKFVAN 149 (438)
T ss_dssp E-TTSHHHHHHHHCTGGGG-SEEEEESEEE--EEETTEEEE--SSHHHHHC--TTS-HHHHHHHH-------HHHHHHHH
T ss_pred h-ccCHHHHHHHhCCcccc-eEEEEcceeE--EEeCCEEeeCCCCHHHhhcC-CCccHHHHHHHH-------HHHHHHhh
Confidence 0 111 23344467777 7887765533 33366776666653322111 001111111221 22222222
Q ss_pred hhcCCCCCCcCCCchhhhhhhhhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHH-HHHh
Q 038727 155 LLDSPPPEALHGDLSFHDLLRDKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAA-DAIT 233 (565)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~~ 233 (565)
+-... ++...+ .+....++.++++++-.++.++..+.. .++.
T Consensus 150 ~~~~~-~~~~~~------------------------------------~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~ 192 (438)
T PF00996_consen 150 YEEDD-PSTHKG------------------------------------LDPEKKTFQELLKKFGLSENLIDFIGHAIALS 192 (438)
T ss_dssp GCTTB-GGGSTT------------------------------------G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-S
T ss_pred cccCC-cchhhc------------------------------------cccccccHHHHHHhcCCCHHHHHHHHHhhhhc
Confidence 11111 110000 011346777777777777777777652 2222
Q ss_pred ccCCCCCCCh-hHHHHH-HHHhccccCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC
Q 038727 234 GSMASIHAPG-SGYVLL-HHVMGETDGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV 311 (565)
Q Consensus 234 g~~~~~~~~~-~~~~~~-~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~ 311 (565)
..-.....|. ..+..+ .+......+..+.|.||..|.+.|++++.+.+.-.|+...+|++|++|..++++++.+|..
T Consensus 193 ~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s- 271 (438)
T PF00996_consen 193 LDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS- 271 (438)
T ss_dssp SSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-
T ss_pred cCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-
Confidence 2111111111 122212 1221112233456779999999999999999999999999999999999854388888875
Q ss_pred CCcEEecCEEEECCChHHHHhhcCCCCCCCHHHHHHHhhcCCCCceEEEEEecCCCCccccccCCCcCCCCccccEEEeC
Q 038727 312 DGTRVHSSFVLSNATPYKTFMGLVPRDVLPDDFLRAIKYSDYHSGVTKINVAVDKLPQFHCCKSSQLEVGPHHTATVHIG 391 (565)
Q Consensus 312 ~G~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (565)
+|+++.|++||.. |.. +. . +++. ...+....+.++.+..-. +. ...-.|.++
T Consensus 272 ~ge~v~~k~vI~d--psy-~p----~---------~v~~---~~~V~RaI~Il~~pi~~t-------~~--~~s~~IiiP 323 (438)
T PF00996_consen 272 EGEVVKAKKVIGD--PSY-LP----E---------KVKK---TGQVSRAICILDHPIPNT-------ED--ASSVQIIIP 323 (438)
T ss_dssp TTEEEEESEEEEE--GGG-BG----C---------GEEE---EEEEEEEEEEESS-STTS-------TT---SSEEEEE-
T ss_pred CCEEEEcCEEEEC--Ccc-Cc----c---------cccc---cceEEEEEEEEcCCCCCC-------CC--CceEEEecC
Confidence 7889999999963 332 11 1 1111 124555566667653110 11 111145553
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCCeEEEEcCCCCCCCCCCCCccEEEEEcc
Q 038727 392 CESMEEIGSACQDAWNGLPSRRPVMEMTIPSSLDKTISPPGKHVVSLFTQ 441 (565)
Q Consensus 392 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~p~G~~~v~~~~~ 441 (565)
+. +..+.+.+++...+. +...+|+|+.++.+.+.
T Consensus 324 ~~---------------~~~~~~dIyv~~~ss-~~~~CP~G~yi~~~St~ 357 (438)
T PF00996_consen 324 QS---------------QVGRKSDIYVLQLSS-STGVCPKGQYIAYVSTT 357 (438)
T ss_dssp GG---------------GCTSSS-EEEEEEEG-GGTSS-TT-EEEEEEEE
T ss_pred Cc---------------ccCCCCCeEEEEECC-CccccCCCcEEEEEEec
Confidence 31 123344466654432 34578999998888753
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.51 E-value=3.8e-13 Score=129.05 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=57.6
Q ss_pred CccccccC-CchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 260 RNLWSHVE-GGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 260 ~g~~~~~~-gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.|.. ||. ...+.|+++|...+++.|++|+++++|.+|..++ .+.. +.+.+|++++||.+|++++...
T Consensus 100 ~Gr~-Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-~~f~-l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 100 LGRM-FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD-SGFR-LDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred Ccee-cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC-ceEE-EEcCCCCEEEccEEEEecCCcC
Confidence 4544 776 7788999999999999999999999999999987 5554 8999998899999999988443
No 37
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.50 E-value=2.5e-13 Score=137.23 Aligned_cols=68 Identities=32% Similarity=0.482 Sum_probs=58.4
Q ss_pred ccCCc---hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 265 HVEGG---MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 265 ~~~gG---~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
++.+| ...++++|.+.+++.|++|+.+++|++|..++ +++.+|++.+|+ +.||+||+|++++.. .|+.
T Consensus 138 ~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~g~-i~ad~vV~a~G~~s~--~l~~ 208 (358)
T PF01266_consen 138 FPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSDGE-IRADRVVLAAGAWSP--QLLP 208 (358)
T ss_dssp ETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET-TEEEEEEETTEE-EEECEEEE--GGGHH--HHHH
T ss_pred ccccccccccchhhhhHHHHHHhhhhccccccccchhhcc-cccccccccccc-cccceeEecccccce--eeee
Confidence 67777 78999999999999999999999999999999 999999999998 999999999998873 4443
No 38
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.46 E-value=4e-11 Score=122.11 Aligned_cols=61 Identities=26% Similarity=0.306 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
..++..+.+.+.+.|++++++++|++|..++ +.+. |++++| ++.+|.||+|++++. ..+++
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~-v~~~~g-~~~a~~vV~A~G~~~--~~l~~ 209 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADG-DGVT-VTTADG-TYEAKKLVVSAGAWV--KDLLP 209 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeC-CeEE-EEeCCC-EEEeeEEEEecCcch--hhhcc
Confidence 4677778888888999999999999999877 6554 888888 599999999999886 35554
No 39
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.46 E-value=1e-10 Score=120.26 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEec-CCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIG-DSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~-~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..++.+|++.+.++|++++.+++|++|... + +++.+|++.+| ++.+++||++++.+.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCCc-eEECCEEEECCChhh
Confidence 356778888899999999999999999764 5 67777888888 499999999888876
No 40
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.45 E-value=5.9e-14 Score=103.03 Aligned_cols=54 Identities=39% Similarity=0.645 Sum_probs=48.3
Q ss_pred EEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceeccchhhhhh
Q 038727 25 VIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSL 79 (565)
Q Consensus 25 IIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d~g~~~~~~ 79 (565)
|||||++||+||+.|+++|++|+|||+++++||++.+.. .+|+.+|.|++.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~d~g~~~~~~ 54 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFR-IPGYRFDLGAHYFFP 54 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEE-ETTEEEETSS-SEEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEE-ECCEEEeeccEEEeC
Confidence 899999999999999999999999999999999999887 588999999987644
No 41
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.43 E-value=7e-11 Score=123.01 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+++.|++.+++.|++|+.+++|++|.. + +. ..|++.+|+ +.||+||+|++.+.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~-~~-~~v~t~~g~-v~A~~VV~Atga~s 237 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-G-QP-AVVRTPDGQ-VTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-C-Cc-eEEEeCCcE-EECCEEEEcccccc
Confidence 367899999999999999999999999974 3 33 448888784 89999999999875
No 42
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.43 E-value=1.3e-10 Score=118.55 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+++.|++++.+++|++|..++ +.+. |++.+| ++.+|.||+|++.+.
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~~-v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTE-LLVT-VKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeEE-EEeCCC-EEEeCEEEEecCcch
Confidence 5678888888899999999999999999876 6655 777776 599999999999875
No 43
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.43 E-value=9.1e-12 Score=123.85 Aligned_cols=60 Identities=25% Similarity=0.343 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcE-EecCEEEECCChHHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTR-VHSSFVLSNATPYKT 330 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~-~~ad~VI~a~~~~~~ 330 (565)
...++.+|++.++++|++|++|++|+.|..++ +++..+.+.+|++ ++|+.||.|++..+.
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQS-DGVFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-CceEEEEecCCcEEEEeeEEEECCchhHH
Confidence 46789999999999999999999999999987 6566688888877 999999999998763
No 44
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.41 E-value=3e-12 Score=127.03 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=54.0
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCce-eccchhhhhhhhhhHhhh
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFK-FSRCSYLQSLLRPSVIRE 87 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~-~d~g~~~~~~~~~~~~~~ 87 (565)
+||+|||||++||++|++|++.|.+|+|+|+++.+||.|.+.. ..|+. .+.|++++....+.+++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~~~ 68 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVWDY 68 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHHHH
Confidence 7999999999999999999999999999999999999998765 34544 477887765555544443
No 45
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.38 E-value=2.8e-12 Score=129.06 Aligned_cols=64 Identities=22% Similarity=0.181 Sum_probs=47.2
Q ss_pred ccCC-chHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 265 HVEG-GMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 265 ~~~g-G~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
||.- -..++.++|.+.+++.|++|+++++|++|..++ +++..|++++++++.||.||+|++...
T Consensus 102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEEEEETTTEEEEESEEEE----SS
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeEeeccCcccccCCEEEEecCCCC
Confidence 5543 456789999999999999999999999999988 777779987777899999999988543
No 46
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.35 E-value=3e-11 Score=123.42 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.++|.+.+++.|++++++++|++|..++ +++ .|++.+| ++.||.||+|++.+.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcch
Confidence 36889999999999999999999999998876 665 4888777 599999999999875
No 47
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.33 E-value=2e-11 Score=106.80 Aligned_cols=42 Identities=43% Similarity=0.747 Sum_probs=39.2
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
...||+|||||++||+||++|+++|.+|+|||++..+||-++
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 356999999999999999999999999999999999998864
No 48
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.32 E-value=5.4e-11 Score=122.91 Aligned_cols=58 Identities=26% Similarity=0.333 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHH----cC--cEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHH
Q 038727 271 GSVSLAISKAATK----AG--AHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKT 330 (565)
Q Consensus 271 ~~l~~~l~~~l~~----~G--~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~ 330 (565)
..++++|.+.+++ +| ++|+++++|++|..++ ++...|.+.+| ++.||.||+|++.+..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 6789999999998 78 7899999999999886 66666888888 5999999999999873
No 49
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.30 E-value=6.7e-11 Score=125.13 Aligned_cols=58 Identities=28% Similarity=0.342 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC---C--cEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD---G--TRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~---G--~~~~ad~VI~a~~~~~ 329 (565)
..++.+++..+.++|++|+++++|++|..++ +++++|++.+ | .++.||.||.|+++|.
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 4678888888899999999999999999988 8888887632 3 3689999999999987
No 50
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.24 E-value=3.2e-10 Score=116.73 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC-----cEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG-----TRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G-----~~~~ad~VI~a~~~~~ 329 (565)
..+...|.+.+++.|++|+.+++|++|..++ +.++ +.+.++ .+++||+||+|++++.
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEE-EEEEcCCCCccceEecCEEEECCCcCh
Confidence 5678888999999999999999999998876 6654 443332 3689999999999986
No 51
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.21 E-value=2.3e-10 Score=108.02 Aligned_cols=41 Identities=46% Similarity=0.803 Sum_probs=38.4
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAA 59 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~ 59 (565)
.++||+|||||++||+||+.|+++|++|+|+||+..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 57999999999999999999999999999999999988764
No 52
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.21 E-value=4.9e-10 Score=115.72 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...++.+|.+.++++|++|+++++|++|..++ +++.+|++.++ ++.||+||+|++++.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 45788899999999999999999999999887 77777877766 589999999999886
No 53
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.20 E-value=7.5e-10 Score=115.79 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=52.1
Q ss_pred cCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC--CC--cEEecCEEEECCChHH
Q 038727 266 VEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV--DG--TRVHSSFVLSNATPYK 329 (565)
Q Consensus 266 ~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~--~G--~~~~ad~VI~a~~~~~ 329 (565)
+.++...+.+.|.+.+++.|++|+++++|++|..++ +++++|++. +| ..+.|+.||+|++...
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD-GRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 345567789999999999999999999999999887 899988774 23 3679999999998643
No 54
>PRK07121 hypothetical protein; Validated
Probab=99.19 E-value=7.2e-10 Score=116.47 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC-Cc--EEec-CEEEECCChHH
Q 038727 269 GMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD-GT--RVHS-SFVLSNATPYK 329 (565)
Q Consensus 269 G~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~-G~--~~~a-d~VI~a~~~~~ 329 (565)
+...+.+.|.+.+++.|++|+++++|++|..++++++++|+..+ ++ .+.| +.||+|++...
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 45678999999999999999999999999886426898887753 32 5788 99999998764
No 55
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.19 E-value=9.1e-10 Score=111.54 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 271 GSVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 271 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
..++..|.+.+.+. |++|+.+++|++|.. + .|++.+|+ ++||+||+|++++. ..|++
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g~-i~a~~VV~A~G~~s--~~l~~ 202 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSRGD-VHADQVFVCPGADF--ETLFP 202 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCCCc-EEeCEEEECCCCCh--hhhCc
Confidence 46788888888776 999999999999952 3 47788775 78999999999886 45554
No 56
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.18 E-value=3.5e-10 Score=107.29 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC-----------CcEEecCEEEECCChHHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD-----------GTRVHSSFVLSNATPYKT 330 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~-----------G~~~~ad~VI~a~~~~~~ 330 (565)
..+...|.+.+.+.|++|++++.|+++..++++++.+|.+.. ..++.|+.||.|++....
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 366788888889999999999999999876614788877642 236899999999986653
No 57
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.18 E-value=3.3e-10 Score=105.63 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecC-CCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGD-SGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~-~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.-.+++...++++|+.++.+..|+.+...+ ++..++|.+.+|..+.|+.+|+|+++|. .+||++
T Consensus 154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi--~klL~~ 218 (399)
T KOG2820|consen 154 KSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI--NKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH--HhhcCc
Confidence 457788888999999999999999998432 1556679999999999999999999997 588875
No 58
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.17 E-value=1.7e-10 Score=102.03 Aligned_cols=42 Identities=45% Similarity=0.745 Sum_probs=35.5
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
.++||+|||||++||+||++|+++|++|+|||++..+||...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 568999999999999999999999999999999999998764
No 59
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.16 E-value=1.4e-09 Score=114.29 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC--CCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV--DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~--~G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+++.|++|+++++|++|..++ +++++|+.. +|+ ++.|+.||++++...
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~-g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD-GKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC-CEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 4578899999999999999999999999877 888888763 332 588999999988554
No 60
>PRK08244 hypothetical protein; Provisional
Probab=99.16 E-value=9.7e-09 Score=108.21 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC--CC-cEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV--DG-TRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~--~G-~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+-+.|.+.+++.|++|+++++|++|..++ +++. |.+. +| ++++||+||.|.+.+..+.+.++
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDG-DGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcC-CeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence 345566677778899999999999998877 6654 4443 45 47999999999998887666664
No 61
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.15 E-value=6.2e-10 Score=121.10 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=55.0
Q ss_pred ccCCch---HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 265 HVEGGM---GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 265 ~~~gG~---~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
++.+|. ..++++|.+.+++ |++|+.+++|++|..++ +++. |.+++|..+.||+||+|++.+. ..+.+
T Consensus 399 ~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~~-v~t~~g~~~~ad~VV~A~G~~s--~~l~~ 468 (662)
T PRK01747 399 YPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED-DGWQ-LDFAGGTLASAPVVVLANGHDA--ARFAQ 468 (662)
T ss_pred eCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC-CEEE-EEECCCcEEECCEEEECCCCCc--ccccc
Confidence 565653 5789999999988 99999999999999887 7766 8888887778999999999886 34543
No 62
>PRK07190 hypothetical protein; Provisional
Probab=99.14 E-value=1.3e-09 Score=113.70 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+-+.|.+.+.+.|++|+++++|++|..++ +++. +.+.+|++++|++||.|.+...++.+.++
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~-~~v~-v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQ-AGCL-TTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeeE-EEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 345566777888899999999999999887 6665 66677888999999999999887777664
No 63
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.14 E-value=1.2e-09 Score=111.76 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+.+.|.+.+++.|++++++++|++|..++ +++. |++.+|+++.+|.||.|.+.+..+.+.++
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~a~~vV~AdG~~S~vr~~~g 176 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDA-DRVR-LRLDDGRRLEAALAIAADGAASTLRELAG 176 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecC-CeEE-EEECCCCEEEeCEEEEecCCCchHHHhhc
Confidence 567788888888999999999999999877 7665 88888888999999999988776555553
No 64
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.14 E-value=7.5e-10 Score=112.95 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.+-+.|++.+++.|++++.++.|+.+..++ +++..++..++.+++|+.||.+-++...+.+.+..
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~ 160 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGL 160 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCC
Confidence 345668888999999999999999999988 66665555555789999999999988876666654
No 65
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.13 E-value=8.7e-10 Score=113.45 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~ 335 (565)
.+-+.|.+.+++.|++|+.+++|++|..++ +++.+|. .+|.++.||.||.|.+....+.+-+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~-~~g~~i~A~~VI~A~G~~s~l~~~l 170 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVE-ADGDVIEAKTVILADGVNSILAEKL 170 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEE-cCCcEEECCEEEEEeCCCHHHHHHc
Confidence 345567777888999999999999998877 7776565 4566799999999998776544433
No 66
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.12 E-value=2.7e-09 Score=114.34 Aligned_cols=59 Identities=25% Similarity=0.408 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEec--CCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIG--DSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~--~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
...++.+|++.++++|++|+.+++|++|..+ + +++.+|++ .+|+ ++.||.||+|+++|.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 4578899999999999999999999999876 5 77777775 2343 589999999999996
No 67
>PRK10015 oxidoreductase; Provisional
Probab=99.11 E-value=1.9e-09 Score=110.76 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhc
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGL 334 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l 334 (565)
.+-+.|.+.+++.|++++.+++|++|..++ +++.+|... +.++.||.||.|.+....+.+-
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~-~~~i~A~~VI~AdG~~s~v~~~ 169 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAG-DDILEANVVILADGVNSMLGRS 169 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeC-CeEEECCEEEEccCcchhhhcc
Confidence 344557777888899999999999998887 777767654 4569999999999987654443
No 68
>PRK06847 hypothetical protein; Provisional
Probab=99.11 E-value=1.1e-09 Score=111.34 Aligned_cols=62 Identities=29% Similarity=0.376 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~ 335 (565)
.+.+.|.+.+++.|++|+++++|++|..++ +++. |.+.+|+++.+|.||.|.+.+....+.+
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~~~-v~~~~g~~~~ad~vI~AdG~~s~~r~~l 169 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDD-DGVT-VTFSDGTTGRYDLVVGADGLYSKVRSLV 169 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC-CEEE-EEEcCCCEEEcCEEEECcCCCcchhhHh
Confidence 567788888888899999999999998876 6655 7788898899999999999877554444
No 69
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.11 E-value=1.4e-09 Score=110.67 Aligned_cols=62 Identities=26% Similarity=0.339 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCc-----EEecCEEEECCChHHHHhhcCC
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGT-----RVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~-----~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
..|+-..+..+.++|.++++.++|+++..++ + +.+|++.|.+ +++|+.||.+++||. .+++.
T Consensus 164 aRLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~--d~i~~ 230 (532)
T COG0578 164 ARLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDRETGETYEIRARAVVNAAGPWV--DEILE 230 (532)
T ss_pred HHHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEecCCCcEEEEEcCEEEECCCccH--HHHHH
Confidence 3677788888899999999999999999998 7 8899987643 589999999999997 45554
No 70
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.10 E-value=1.9e-09 Score=111.27 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeCC-C--cEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLVD-G--TRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~~-G--~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+.+.|.+.+.+. |++++++++|++|..++ +.+. |++.+ + .+++||.||.|-+.+..+.+.++
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~-~~~~-v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~ 188 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQ-DAAT-VTLEIEGKQQTLQSKLVVAADGARSPIRQAAG 188 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeeE-EEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence 4667777777765 69999999999998877 6655 66653 2 36999999999988876655553
No 71
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.09 E-value=1.4e-09 Score=111.78 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.+.+.|.+.+.+.|++|+.+++|++|..++ +.+. |++.+|+++.||.||.|.+.+....++++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSG-DDWL-LTLADGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcC-CeEE-EEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence 456777777888899999999999998877 6665 788888889999999999998877777654
No 72
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.09 E-value=1.8e-09 Score=111.49 Aligned_cols=60 Identities=33% Similarity=0.509 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC---CCc--EEecCEEEECCChHH
Q 038727 269 GMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV---DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 269 G~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~---~G~--~~~ad~VI~a~~~~~ 329 (565)
+...+.+.|.+.++++|++|+++++|+++..++ ++|+||+.. +|+ ++.|+.||+|++...
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 567899999999999999999999999999998 999999987 454 578999999988766
No 73
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.08 E-value=1.9e-09 Score=110.22 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcC-cEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKAG-AHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+.+.|.+.+.+.| ++|+++++|++|..++ +++. |++.+|+++.+|.||.|.+.+..+.+.+.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~~-v~~~~g~~~~~~~vi~adG~~S~vr~~l~ 170 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS-DHVE-LTLDDGQQLRARLLVGADGANSKVRQLAG 170 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC-CeeE-EEECCCCEEEeeEEEEeCCCCCHHHHHcC
Confidence 56788888888888 9999999999998877 7665 88889988999999998888776555554
No 74
>PRK07045 putative monooxygenase; Reviewed
Probab=99.08 E-value=2.9e-09 Score=108.75 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHH-cCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhc
Q 038727 272 SVSLAISKAATK-AGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGL 334 (565)
Q Consensus 272 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l 334 (565)
.|.+.|.+.+.+ .|++++++++|+.|..++++.++.|++.+|+++.+|.||.|-+......+.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence 456667776654 479999999999999865244556888899999999999999988876664
No 75
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.07 E-value=1.5e-08 Score=107.36 Aligned_cols=64 Identities=20% Similarity=0.315 Sum_probs=51.5
Q ss_pred ccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC-CCc--EEec-CEEEECCChHHH
Q 038727 265 HVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV-DGT--RVHS-SFVLSNATPYKT 330 (565)
Q Consensus 265 ~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~-~G~--~~~a-d~VI~a~~~~~~ 330 (565)
+..+| +.|..+|.+.+++.|++|+++++|+++..++ ++|+||... +|. .+.+ +.||++++....
T Consensus 212 ~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 212 YAAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDG-GRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred ccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecC-CEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 44555 8999999999999999999999999998877 899998654 343 3556 579998887764
No 76
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.07 E-value=4.6e-10 Score=117.26 Aligned_cols=58 Identities=26% Similarity=0.261 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.+++.|++++++++|++|..++ +.+. +++.+|+++.+|.||++++...
T Consensus 215 d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~-~~~~-v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD-DGVI-VHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC-CeEE-EEECCCCEEEeCEEEEeecCCc
Confidence 45678889999999999999999999998766 5544 6677888899999999988665
No 77
>PRK07236 hypothetical protein; Provisional
Probab=99.06 E-value=5e-09 Score=106.84 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=40.6
Q ss_pred CcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcC
Q 038727 285 GAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 285 G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~ 335 (565)
+++|+++++|++|..++ +.+. |++.+|+++.||.||.|-+.+....+.+
T Consensus 112 ~~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vIgADG~~S~vR~~l 160 (386)
T PRK07236 112 AERYHLGETLVGFEQDG-DRVT-ARFADGRRETADLLVGADGGRSTVRAQL 160 (386)
T ss_pred CcEEEcCCEEEEEEecC-CeEE-EEECCCCEEEeCEEEECCCCCchHHHHh
Confidence 36799999999999877 7666 8889999999999999988777665554
No 78
>PRK06184 hypothetical protein; Provisional
Probab=99.06 E-value=2.7e-09 Score=112.56 Aligned_cols=63 Identities=6% Similarity=0.062 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEe---CCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLL---VDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+-+.|.+.+.+.|++|+++++|++|..++ +.++ |++ .++++++||+||.|.+.+....+.++
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~-~~v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDA-DGVT-ARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcC-CcEE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 355677777888899999999999999887 6665 555 55678999999999999987777664
No 79
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.05 E-value=1.9e-09 Score=113.31 Aligned_cols=57 Identities=26% Similarity=0.346 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC---Cc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD---GT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~---G~--~~~ad~VI~a~~~~~ 329 (565)
..++..+++.+.++|++++++++|++|..++ +.+ +|++.+ |+ ++.|+.||.|+++|.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARREN-GLW-HVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-CEE-EEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 4677788888899999999999999998776 554 466543 53 689999999999987
No 80
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.05 E-value=3.3e-09 Score=108.25 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHH-cCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATK-AGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+.+.|.+.+.+ .|++++++++|++|..++ +++. |.+.+|+++.||.||.|.+.+..+.+.+.
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ-DYVR-VTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC-CeEE-EEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 577888888888 499999999999998877 6665 77888888999999999998876666654
No 81
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=1.1e-09 Score=101.55 Aligned_cols=104 Identities=21% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccC-CCce-eccchhhhhhhhhhHhhhccccccCcee
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELI-PGFK-FSRCSYLQSLLRPSVIRELELKKHGLKL 97 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~-~G~~-~d~g~~~~~~~~~~~~~~l~l~~~g~~~ 97 (565)
++|++|||||++|+.+|..|++.|++|+|+||.+.+||.|.+.... .|.. ..-|+|+|......+++-+. +. .++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~--~F-~e~ 77 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVN--QF-TEF 77 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHh--hh-hhh
Confidence 3799999999999999999999999999999999999999886532 4643 44689998877777776552 11 222
Q ss_pred ecCCCceeeecCCCcEEEEcCChHHHHHHH
Q 038727 98 LKPIATSFTPCLDGLYLLLGFDDQQNNSEI 127 (565)
Q Consensus 98 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 127 (565)
.+-.... .-..+|..+.++.+......-+
T Consensus 78 ~~Y~hrV-la~~ng~~~~lP~nl~ti~ql~ 106 (374)
T COG0562 78 NPYQHRV-LALVNGQLYPLPFNLNTINQLF 106 (374)
T ss_pred hhhccce-eEEECCeeeeccccHHHHHHHh
Confidence 2211111 1123777777777754443333
No 82
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.04 E-value=7.7e-09 Score=105.32 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcC-cEEEeCcceeEEEecCCCceeEEEeC-CCcEEecCEEEECCChHHHHhhcCC
Q 038727 271 GSVSLAISKAATKAG-AHILVNTEVSQIMIGDSGEVDGVLLV-DGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~v~~V~~~-~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
..+.+.|.+.+.+.+ ++++++++|+.+..++ +.+. |+++ +|+++.||.||-|=+.+..+.+.+.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 367888889898877 8999999999999998 8888 8888 9999999999998888887777776
No 83
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.04 E-value=4.7e-09 Score=103.01 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC-CCcEEecCEEEECCChHHHHhhcC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV-DGTRVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~-~G~~~~ad~VI~a~~~~~~~~~l~ 335 (565)
.+.+.|.+.+++.|++++++++|+++..++ +++. +.+. ++.+++||.||.|.+....+.+.+
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~~~a~~vv~a~G~~s~~~~~~ 154 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD-DRVV-VIVRGGEGTVTAKIVIGADGSRSIVAKKL 154 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-CEEE-EEEcCccEEEEeCEEEECCCcchHHHHhc
Confidence 456777888888999999999999998887 6654 4444 345799999999999876555544
No 84
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.04 E-value=1.8e-09 Score=112.85 Aligned_cols=58 Identities=28% Similarity=0.259 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC--cEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG--TRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G--~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.+++.|++++++++|++|..++ +++. +++.+| +++.+|.||++++...
T Consensus 210 ~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 210 DAEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQVV-YENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence 35678888889999999999999999998776 6665 666666 4799999999888665
No 85
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.03 E-value=7.4e-09 Score=107.49 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC--CCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV--DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~--~G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+++.|++|+++++|++|..++++++++|++. +++ ++.++.||++++...
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 46889999999999999999999999998642788887764 343 468899999988765
No 86
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.03 E-value=6.6e-09 Score=106.52 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcC-cEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcC
Q 038727 272 SVSLAISKAATKAG-AHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 272 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~ 335 (565)
.+.+.|.+.+.+.+ ++++++++|++|..++ +.+. |.+.+|+++.||.||.|.+.+....+.+
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vV~AdG~~S~~r~~~ 172 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG-DGVT-VFDQQGNRWTGDALIGCDGVKSVVRQSL 172 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCC-CceE-EEEcCCCEEecCEEEECCCcChHHHhhc
Confidence 45667777777765 8999999999998776 6665 7788888899999999999887654444
No 87
>PRK07588 hypothetical protein; Provisional
Probab=99.03 E-value=4.4e-09 Score=107.57 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~ 335 (565)
.|.+.|.+.+. .|++|+++++|++|..++ +.+. |++++|+++.+|.||-|-+.+....+.+
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~~ 164 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHR-DGVR-VTFERGTPRDFDLVIGADGLHSHVRRLV 164 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECC-CeEE-EEECCCCEEEeCEEEECCCCCccchhhc
Confidence 34555555443 378999999999999887 7766 8888998899999999998887665543
No 88
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.02 E-value=7.7e-09 Score=106.34 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+.+.|.+.+.+.|++|+++++|++|..++ +.+. |++.+|+++.+|.||.|.+.+..+.+.++
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRD-EGVT-VTLSDGSVLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CEEE-EEECCCCEEEeCEEEEcCCCChHHHHHcC
Confidence 677888888888899999999999998877 6665 78888888999999999988776666554
No 89
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.01 E-value=3.4e-09 Score=108.39 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcC-cEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKAG-AHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+.+.|.+.+++.| ++++ ++.|++|..++ +.+. |++.+|++++||.||.|.+.+..+.+.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~-~~~~-v~~~~g~~~~a~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDP-DAAT-LTLADGQVLRADLVVGADGAHSWVRSQAG 174 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecC-CeEE-EEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence 56778888888887 8888 99999998776 6655 88888888999999999998766666654
No 90
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.1e-07 Score=91.28 Aligned_cols=254 Identities=14% Similarity=0.198 Sum_probs=133.4
Q ss_pred CCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCC-Cceeccc-----------hhhh-------h
Q 038727 18 DKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP-GFKFSRC-----------SYLQ-------S 78 (565)
Q Consensus 18 ~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~-G~~~d~g-----------~~~~-------~ 78 (565)
++.|||+|+|.|+.-+..+..|+..|.+|+.+|+|+.-||...+..... --+|+.+ ..+. -
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~l 81 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFL 81 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhh
Confidence 3459999999999999999999999999999999999999877654100 0011100 0010 0
Q ss_pred hhhhhHhhhc---cccccCceeecCCCceeeecCCCcEEEEcCChHHHHH-HHhccchhhhhhhHHHHHHHHHHHHHHHH
Q 038727 79 LLRPSVIREL---ELKKHGLKLLKPIATSFTPCLDGLYLLLGFDDQQNNS-EISKFSKRDADTYPRYENELSKFCKIMDF 154 (565)
Q Consensus 79 ~~~~~~~~~l---~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (565)
+...++++.| ++.++ +++......+ .+.+|+...++........ .+... .....+.+|...+..+.+
T Consensus 82 mAn~~Lvk~Li~T~V~~Y-L~fk~i~gsf--v~~~~k~~KVP~t~~Ea~~s~lmgl--~eKrr~~kFl~~V~n~~e---- 152 (440)
T KOG1439|consen 82 MANGELVKILIHTGVTRY-LEFKSISGSF--VYKKGKIYKVPATEAEALTSPLMGL--FEKRRVMKFLKFVLNYDE---- 152 (440)
T ss_pred hccchHHHHHHHhchhhh-eEEEeecceE--EEECCeEEECCCCHHHHhcCCccch--hHHHHHHHHHHHHhhhhh----
Confidence 1112333333 55555 6666543332 3345666666655322111 11110 111122222222222111
Q ss_pred hhcCCCCCCcCCCchhhhhhhhhhhhhHHHHHHHHHhhhcCcccHHHHHHHHhccHHHHHHcccCChHHHHHHHHH-HHh
Q 038727 155 LLDSPPPEALHGDLSFHDLLRDKMQKSVFWARCLRHVLSLGQKDLVDFMDILLSPTTKILNKWFESDVLKATVAAD-AIT 233 (565)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~ 233 (565)
..+ ....+. .....++.+++.+++............ .++
T Consensus 153 ---~~~-~~~~~~------------------------------------~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~ 192 (440)
T KOG1439|consen 153 ---EDP-KTWQGY------------------------------------DLSKDTMREFLGKFGLLEGTIDFIGHAIALL 192 (440)
T ss_pred ---hcc-cccccc------------------------------------ccccchHHHHHHHhcccccceeeeeeeeEEE
Confidence 111 000000 001124445555554443333222100 000
Q ss_pred ccCCCCCCCh----hHHHHHHHHhccccCCCccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEe-cCCCceeEE
Q 038727 234 GSMASIHAPG----SGYVLLHHVMGETDGDRNLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMI-GDSGEVDGV 308 (565)
Q Consensus 234 g~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~-~~~~~v~~V 308 (565)
......+.|. ..+.+....++. +....|.||..|.+.|++.+++...-.|+...+|.++.+|.. ++ +++.+|
T Consensus 193 ~dd~~ld~p~~~~~~ri~~Y~~S~~~--yg~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~-gk~igv 269 (440)
T KOG1439|consen 193 CDDSYLDQPAKETLERILLYVRSFAR--YGKSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKN-GKVIGV 269 (440)
T ss_pred ecchhccCccHHHHHHHHHHHHHHhh--cCCCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCC-ccEEEE
Confidence 0000111111 112222222222 222236799999999999999998888999999999999998 56 888877
Q ss_pred EeCCCcEEecCEEEEC
Q 038727 309 LLVDGTRVHSSFVLSN 324 (565)
Q Consensus 309 ~~~~G~~~~ad~VI~a 324 (565)
...+ ++..++.||+.
T Consensus 270 k~~~-~v~~~k~vi~d 284 (440)
T KOG1439|consen 270 KSGG-EVAKCKKVICD 284 (440)
T ss_pred ecCC-ceeecceEEec
Confidence 6554 45778888874
No 91
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.01 E-value=4.3e-09 Score=108.52 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHH-cCcEEEeCcceeEEEec-CCCceeEEE---eCCCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATK-AGAHILVNTEVSQIMIG-DSGEVDGVL---LVDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~-~~~~v~~V~---~~~G~--~~~ad~VI~a~~~~~ 329 (565)
...+.++|.+.+.+ .|++|+++++|++|..+ + +.+. |+ +.+|+ +++||+||+|++.+.
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGWE-VTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCEE-EEEEecCCCceEEEEcCEEEECCCcch
Confidence 35778899888865 48999999999999887 5 6654 43 34452 589999999999987
No 92
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.00 E-value=9e-09 Score=105.33 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+-+.|.+.+++. |++++.+++|+++..++ +++. |.+.+|++++||.||.|.+.+..+.+.++
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~-v~~~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDD-DGWE-LTLADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC-CeEE-EEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 4556677767766 89999999999998776 6554 78888888999999999998887666664
No 93
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.00 E-value=1.1e-08 Score=103.68 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=56.6
Q ss_pred ccCCc---hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHH
Q 038727 265 HVEGG---MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKT 330 (565)
Q Consensus 265 ~~~gG---~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~ 330 (565)
.|..| ...++.+|+..+.+.|+.|..||+|++|..+. ++..+|++..|. +++.+||.|++.|+.
T Consensus 178 ~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~-~~~~gVeT~~G~-iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 178 SPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVET-DKFGGVETPHGS-IETECVVNAAGVWAR 244 (856)
T ss_pred cCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeec-CCccceeccCcc-eecceEEechhHHHH
Confidence 45444 36789999999999999999999999999988 777799999997 999999999999984
No 94
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.00 E-value=2.4e-08 Score=106.36 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC-Cc--EEecC-EEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD-GT--RVHSS-FVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~-G~--~~~ad-~VI~a~~~~~ 329 (565)
...+...|.+.+++.|++|+++++|+++..+++++|+||+..+ |+ .+.|+ .||+|++...
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 4567888888899999999999999999986338899987753 33 47787 4999888765
No 95
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.00 E-value=1.5e-08 Score=105.24 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=49.3
Q ss_pred ccCCc---hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEe---CCC--cEEecCEEEECCChHH
Q 038727 265 HVEGG---MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLL---VDG--TRVHSSFVLSNATPYK 329 (565)
Q Consensus 265 ~~~gG---~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~---~~G--~~~~ad~VI~a~~~~~ 329 (565)
++.+| ...++++|.+.++++|++|+++++|++|..++++.+. |.+ .+| .+++||+||+|++.+.
T Consensus 169 ~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 169 AAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred eCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcch
Confidence 45554 3688999999999999999999999999886413443 432 334 2689999999999887
No 96
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.00 E-value=1.4e-08 Score=103.75 Aligned_cols=56 Identities=25% Similarity=0.242 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcC-cEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAG-AHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..++++|++.++++| ..+..+++|..+..+ . ++.+|.+.+|+ +.||+||+|++.+.
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 578999999999999 566669999999875 1 45678899987 99999999999886
No 97
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.00 E-value=3.4e-09 Score=108.30 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+.+.|.+.+.+.++..+++++|++|..++ +.+. |++++|++++||.||.|.+.+..+.+.++
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPRE-DEVT-VTLADGTTLSARLVVGADGRNSPVREAAG 174 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcC-CeEE-EEECCCCEEEEeEEEEecCCCchhHHhcC
Confidence 567777787877765558899999998877 7766 88888888999999999888776555554
No 98
>PRK09126 hypothetical protein; Provisional
Probab=98.99 E-value=6e-09 Score=106.68 Aligned_cols=62 Identities=18% Similarity=0.334 Sum_probs=47.4
Q ss_pred HHHHHHHHHH-HcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 273 VSLAISKAAT-KAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 273 l~~~l~~~l~-~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
+.+.|.+.+. ..|++|+++++|+++..++ +.+. |.+++|+++.||.||.|.+......+.++
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~-~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDD-DGAQ-VTLANGRRLTARLLVAADSRFSATRRQLG 174 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcC-CeEE-EEEcCCCEEEeCEEEEeCCCCchhhHhcC
Confidence 4445555553 4589999999999998876 6554 88888889999999999888766555553
No 99
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.98 E-value=2.4e-08 Score=106.73 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC--CCc-EEec-CEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV--DGT-RVHS-SFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~--~G~-~~~a-d~VI~a~~~~~ 329 (565)
..++..|.+.+++.|++|+++++|++|..++ +++++|+.. ++. ++.| +.||+|++.+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRED-GRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 5688999999999999999999999998887 898888764 332 4788 99999998876
No 100
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.98 E-value=1.6e-08 Score=107.95 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC--Cc-EEecC-EEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD--GT-RVHSS-FVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~--G~-~~~ad-~VI~a~~~~~ 329 (565)
..+.+.|.+.+++.|++|+++++|+++..++ +++++|++.+ ++ .+.++ .||++++...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG-GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 6788999999999999999999999999888 9998888754 33 46786 6999888765
No 101
>PRK08013 oxidoreductase; Provisional
Probab=98.97 E-value=9.6e-09 Score=105.23 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+-+.|.+.+.+. |++++++++|++|..++ +.+. |.+.+|++++||.||-|-+....+.+.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v~-v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGE-NEAF-LTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeEE-EEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 4566777777775 79999999999998876 6665 77888989999999999888887777664
No 102
>PRK06116 glutathione reductase; Validated
Probab=98.97 E-value=2.6e-09 Score=111.14 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.++++|++++++++|++|..++++.+. |++.+|+++.+|.||++++...
T Consensus 207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~-v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLT-LTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEE-EEEcCCcEEEeCEEEEeeCCCc
Confidence 3467788888999999999999999999876513344 7778888899999999987654
No 103
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1.1e-08 Score=108.76 Aligned_cols=58 Identities=7% Similarity=0.009 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC---Cc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD---GT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~---G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+.+.|++|++++.++++..++ |+++||...+ |+ .+.|+.||+|++...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4688889888888899999999999999988 9999988643 33 578999999998765
No 104
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.97 E-value=9.1e-10 Score=114.18 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.+++.|+++++++.|++|..++ +.+. |++.+|+++.+|.||++++...
T Consensus 206 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~~-v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 206 DDDMRALLARNMEGRGIRIHPQTSLTSITKTD-DGLK-VTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeEE-EEEcCCcEeecCEEEEeeCCCc
Confidence 35677788888999999999999999998765 4444 6777888899999999887654
No 105
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.97 E-value=2e-08 Score=104.39 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=49.0
Q ss_pred ccCCc---hHHHHHHHHHHHHHcC-cEEEeCcceeEEEecCCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 265 HVEGG---MGSVSLAISKAATKAG-AHILVNTEVSQIMIGDSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 265 ~~~gG---~~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
++.+| ...+.++|.+.+++.| ++|+++++|++|..++++.+. |.+ .+|+ ++.|++||+|++.+.
T Consensus 174 ~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 174 IEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred cCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcch
Confidence 44444 4678999999999987 799999999999986514444 443 3453 589999999999887
No 106
>PRK06834 hypothetical protein; Provisional
Probab=98.96 E-value=9.4e-09 Score=107.36 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+-+.|.+.+++.|++|+++++|++|..++ +.+. |++.+|++++||+||.|.+.+....+.++
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-~~v~-v~~~~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDD-TGVD-VELSDGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CeEE-EEECCCCEEEeCEEEEecCCCCCcHhhcC
Confidence 466777788888899999999999999887 7665 77778888999999999988876655554
No 107
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.96 E-value=1.2e-08 Score=105.30 Aligned_cols=43 Identities=42% Similarity=0.589 Sum_probs=39.8
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
...+|+|||||++||+||..|++.|++|+|||+++.+||.+..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 3578999999999999999999999999999999999998743
No 108
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.95 E-value=6.1e-09 Score=109.56 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC----cEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG----TRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G----~~~~ad~VI~a~~~~~ 329 (565)
..+...++..++++|++++.+++|++|..++ +. .+|.+.++ .++.|+.||.|+++|.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREG-GL-WRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-CE-EEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 4677788888899999999999999998876 54 34666554 2589999999999987
No 109
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=2.5e-08 Score=107.27 Aligned_cols=55 Identities=20% Similarity=0.334 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC---CCc--EEecCEEEECCChHH
Q 038727 274 SLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV---DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 274 ~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~---~G~--~~~ad~VI~a~~~~~ 329 (565)
.+.|.+.+++.|++|++++.|+++..++ ++++||... +|+ .+.|+.||+|++...
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~-g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVD-GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 3667777888899999999999999888 899999874 454 588999999998765
No 110
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.95 E-value=7.3e-10 Score=115.72 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC---cEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG---TRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G---~~~~ad~VI~a~~~~~ 329 (565)
..+.+.+.+.+++.|++++++++|++|..++ +++. +.+.+| +++.+|.||++++...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~v~-v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD-DGVT-VTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEEE-EEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 5677888888999999999999999998776 5554 666655 6799999999988665
No 111
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.95 E-value=1.7e-08 Score=103.74 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 273 VSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 273 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
+.+.|.+.+.+. |++++++++|++|..++ +.+. |++.+|++++||.||.|-+....+.+.+.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~~~-v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGE-SEAW-LTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeC-CeEE-EEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 445666666654 69999999999998876 6655 88889989999999999998776666654
No 112
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.95 E-value=2.3e-08 Score=101.93 Aligned_cols=62 Identities=10% Similarity=0.200 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 273 VSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 273 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
+-..|.+.+.+. |++++++++|+++..++ +.+. |++++|+++++|.||.|-+....+.+.+.
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~-~~~~-v~~~~g~~~~~~lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSA-EGNR-VTLESGAEIEAKWVIGADGANSQVRQLAG 174 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcC-CeEE-EEECCCCEEEeeEEEEecCCCchhHHhcC
Confidence 445566665554 68999999999999887 6665 88899999999999999998887666654
No 113
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.94 E-value=3e-08 Score=105.24 Aligned_cols=59 Identities=27% Similarity=0.403 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC-CCc--EEecC-EEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV-DGT--RVHSS-FVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~-~G~--~~~ad-~VI~a~~~~~ 329 (565)
...+...|.+.+++.|++|+++++|++|..++ ++|+||+.. +|+ .+.|+ .||++++...
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVED-GRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 35688899999999999999999999999888 999998774 343 47785 6898887765
No 114
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=4.8e-08 Score=104.56 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+++.|++|++++.|+++..+++++++||.. .+|+ .+.|+.||++++...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688999998999999999999999998764268999875 3564 678999999998765
No 115
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.93 E-value=2e-08 Score=102.34 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC-CCc--EEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV-DGT--RVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~-~G~--~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.+.+.|.+.+.+.|++++++++++++...+...+ .|++. +|+ +++||.||-|-+.+..+.+.++.
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERDGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 4556677777778999999999888865331333 47675 775 68999999998888877676643
No 116
>PRK12839 hypothetical protein; Provisional
Probab=98.93 E-value=7.8e-08 Score=102.18 Aligned_cols=49 Identities=35% Similarity=0.508 Sum_probs=43.2
Q ss_pred cccccCCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 13 TRTLKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 13 ~~~~~~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
|+..++.++||+|||+|++||+||+.|+++|.+|+|+||+..+||.+..
T Consensus 1 ~~~~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 1 MTPSMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CCCCcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 3334567899999999999999999999999999999999999998753
No 117
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.93 E-value=1.9e-08 Score=103.11 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=47.6
Q ss_pred HHHHHHHHHHH-cCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 273 VSLAISKAATK-AGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 273 l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
+-+.|.+.+.+ .|++++++++|++|..++ +++. |++++|.++.+|.||.|.+.+..+.+.++
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~~ 176 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQ-GSVR-VTLDDGETLTGRLLVAADGSHSALREALG 176 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcC-CeEE-EEECCCCEEEeCEEEEecCCChhhHHhhC
Confidence 34455555555 478999999999998776 6665 88888888999999999998876555553
No 118
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.93 E-value=8e-09 Score=95.26 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.+.+.|.+.+++.+.+++++++|++|..++ ++.. |++.+++++.||+||+|++...
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~-~~w~-v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRRDG-DGWT-VTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEEET-TTEE-EEETTS-EEEEEEEEE---SSC
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEEec-cEEE-EEEEecceeeeeeEEEeeeccC
Confidence 345566666778888899999999999998 7765 9999997899999999998543
No 119
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.93 E-value=1.8e-08 Score=103.59 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEe-CCCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLL-VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~-~~G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.++++ |++|+++++|++|..++ +++.+|.. .+++ .+.|+.||+|++...
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEND-NTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecC-CEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 46788888888764 89999999999998887 88888653 3444 589999999988754
No 120
>PLN02661 Putative thiazole synthesis
Probab=98.93 E-value=2e-08 Score=97.39 Aligned_cols=41 Identities=32% Similarity=0.546 Sum_probs=37.3
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHC-CCcEEEEcccCCCCCee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARG-GLSVAVLERRHVIGGAA 59 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~-G~~V~vlE~~~~~GG~~ 59 (565)
.++||+|||||++||+||+.|++. |++|+|+|++..+||..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 457999999999999999999986 89999999999988754
No 121
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.92 E-value=3e-08 Score=105.46 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeC--CC--cEEecCEEEECCChHHHHhhcCCC
Q 038727 273 VSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLV--DG--TRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 273 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~--~G--~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
+-+.|.+.+.+. |++|+++++|++|..++ ++++ |++. +| ++++||.||-|-+...+..+.++.
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~-~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~ 182 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDD-DGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTLGV 182 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcC-CeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCC
Confidence 445666666664 89999999999999887 7665 6554 56 479999999999998887777643
No 122
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.92 E-value=3.8e-08 Score=104.57 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC-CCc--EEecC-EEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV-DGT--RVHSS-FVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~-~G~--~~~ad-~VI~a~~~~~ 329 (565)
...+...|.+.+++.|++|+++++|++|..++ ++|++|+.. +|+ .+.|+ .||+|++...
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~ 269 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED-GRVTGVHAAESGEPQLIRARRGVILASGGFE 269 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-CEEEEEEEEeCCcEEEEEeceeEEEccCCcC
Confidence 45678888899999999999999999999887 899988774 443 47786 5888777654
No 123
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.92 E-value=2.9e-08 Score=106.24 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
..+...|.+.+++.|++|++++.|++|..++ ++++||.. .+|+ .+.|+.||+|++...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 4678888888888899999999999999888 89888765 3564 589999999999765
No 124
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.92 E-value=9.5e-09 Score=107.34 Aligned_cols=58 Identities=29% Similarity=0.283 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC--CC--cEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV--DG--TRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~--~G--~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.++++|++|+++++|++|..++ +.+. +++. +| +++.+|.||++++...
T Consensus 212 d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~~-v~~~~~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 212 DAEVSKEIAKQYKKLGVKILTGTKVESIDDNG-SKVT-VTVSKKDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred CHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CeEE-EEEEecCCCeEEEEeCEEEECcCccc
Confidence 35677888899999999999999999998765 5443 4443 56 3699999999988665
No 125
>PLN02697 lycopene epsilon cyclase
Probab=98.91 E-value=3.1e-08 Score=103.14 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.+.+.|.+.+.+.|+++ ++++|++|..++ +++..+.+.+|.++.|+.||.|.+.+.
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEAS-DGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 56677888888889998 688999998876 666546677888899999999999876
No 126
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.91 E-value=2.3e-08 Score=102.14 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEe-cCCCceeEEEe-CCCc--EEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMI-GDSGEVDGVLL-VDGT--RVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~-~~~~~v~~V~~-~~G~--~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.+.+.|.+.+.+.|++++++++|++|.. ++ +.+ .|++ .+|+ +++||.||-|-+......+.++.
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~-~~~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~ 171 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDS-DRP-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPA 171 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCC-Cce-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCc
Confidence 3456666666778999999999999986 33 443 3666 4664 68999999988888776666643
No 127
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.91 E-value=1.8e-09 Score=111.83 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC-cEEecCEEEECCChHHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG-TRVHSSFVLSNATPYKT 330 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G-~~~~ad~VI~a~~~~~~ 330 (565)
...+.+.+.+.+++.|+++++++.|++|..++ +....|++.+| +++.+|.||++++....
T Consensus 206 d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~-~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 206 DSMISETITEEYEKEGINVHKLSKPVKVEKTV-EGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeC-CceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 34677888888999999999999999998764 33234777777 57999999999886653
No 128
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.90 E-value=5.6e-08 Score=102.40 Aligned_cols=42 Identities=43% Similarity=0.640 Sum_probs=38.6
Q ss_pred CCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 18 DKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 18 ~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
+.++||||||+| +||+||+.+++.|.+|+||||....||.+.
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 457899999999 999999999999999999999998888753
No 129
>PRK06185 hypothetical protein; Provisional
Probab=98.90 E-value=3.4e-08 Score=101.64 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEe--CCCc-EEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLL--VDGT-RVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~--~~G~-~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+.+.|.+.+.+. |++++.+++|+++..++ +++.+|.+ .+|+ +++||.||.|.+.+..+.+.++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 4566677766664 79999999999999887 77765654 4564 7999999999998876666654
No 130
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.90 E-value=7.7e-08 Score=103.17 Aligned_cols=59 Identities=17% Similarity=0.321 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEe-cCCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMI-GDSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~-~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
...+...|.+.+++.|++|+.++.|+++.. ++ +++.||.. .+|+ .+.|+.||+|++...
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 357888999989999999999999999987 56 88998875 3564 578999999998764
No 131
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.90 E-value=2.9e-08 Score=100.47 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCc--EEecCEEEECCChHH
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~--~~~ad~VI~a~~~~~ 329 (565)
.+.+.|.+.+++.|++|+++++|+++..++ +++..+...+|+ .++||.||++++...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 789999999999999999999999999887 777766665553 589999999988643
No 132
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.90 E-value=3.8e-08 Score=105.75 Aligned_cols=59 Identities=8% Similarity=0.173 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHc--------C-----cEEEeCcceeEEEecCCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKA--------G-----AHILVNTEVSQIMIGDSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~--------G-----~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
...+.+.|.+.+++. | ++|++++.|+++..++ +++.||.. .+|+ .+.|+.||+|++...
T Consensus 137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC-CEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 346888888888776 6 9999999999999877 88888764 3554 579999999999754
No 133
>PRK06126 hypothetical protein; Provisional
Probab=98.89 E-value=2.9e-08 Score=106.00 Aligned_cols=63 Identities=6% Similarity=0.112 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEe---CCCc--EEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLL---VDGT--RVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+-+.|.+.+++. |++|+++++|++|..++ ++++ +.+ .+|+ ++++|.||.|-+.+..+.+.++
T Consensus 127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDA-DGVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHHhCCCceEEeccEEEEEEECC-CeEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 3556677777664 79999999999999887 7665 444 3354 6899999999999887766664
No 134
>PRK06753 hypothetical protein; Provisional
Probab=98.89 E-value=3.4e-08 Score=100.42 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.+.+.|.+.++ +.+|+++++|++|..++ +++. |.+++|+++.+|.||-|-+.+....+.+..
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~~~~vigadG~~S~vR~~~~~ 160 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENET-DKVT-IHFADGESEAFDLCIGADGIHSKVRQSVNA 160 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecC-CcEE-EEECCCCEEecCEEEECCCcchHHHHHhCC
Confidence 34455554443 35799999999998776 7665 788899889999999999988877776643
No 135
>PLN02507 glutathione reductase
Probab=98.89 E-value=4.6e-09 Score=110.00 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.+++.|+++++++.|++|..++ +++. |++.+|+++.+|.||++++...
T Consensus 243 d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~-~~~~-v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 243 DDEMRAVVARNLEGRGINLHPRTNLTQLTKTE-GGIK-VITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CeEE-EEECCCcEEEcCEEEEeecCCC
Confidence 35677888888999999999999999998765 5554 7777888899999999888654
No 136
>PRK06370 mercuric reductase; Validated
Probab=98.89 E-value=1.6e-09 Score=113.16 Aligned_cols=47 Identities=38% Similarity=0.638 Sum_probs=39.8
Q ss_pred CCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccC
Q 038727 18 DKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELI 65 (565)
Q Consensus 18 ~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~ 65 (565)
+.+|||+|||||++|++||.+|++.|++|+|+|+. .+||.|....+.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gci 49 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCV 49 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccC
Confidence 45699999999999999999999999999999996 567776544333
No 137
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=1.2e-07 Score=101.29 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEec-CCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIG-DSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~-~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
...|...|.+.+.+.|++|++++.|+++..+ + ++++||.. .+|+ .+.|+.||+|++...
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 4568889988888889999999999999985 6 89999875 3554 578999999998765
No 138
>PRK05868 hypothetical protein; Validated
Probab=98.89 E-value=2.6e-08 Score=100.79 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=43.9
Q ss_pred HcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 283 KAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 283 ~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
..|++++++++|++|..++ +.+. |++++|++++||.||-|-+.+.+..+.+.
T Consensus 116 ~~~v~i~~~~~v~~i~~~~-~~v~-v~~~dg~~~~adlvIgADG~~S~vR~~~~ 167 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDG-DSVR-VTFERAAAREFDLVIGADGLHSNVRRLVF 167 (372)
T ss_pred cCCcEEEeCCEEEEEEecC-CeEE-EEECCCCeEEeCEEEECCCCCchHHHHhc
Confidence 4588999999999998766 6665 88899989999999999998887777664
No 139
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.88 E-value=7.8e-09 Score=107.28 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.+++.|++++++++|++|..++ +++. +.+.+++ +.+|.||++++...
T Consensus 198 ~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~v~-v~~~~g~-i~~D~vl~a~G~~p 254 (441)
T PRK08010 198 DRDIADNIATILRDQGVDIILNAHVERISHHE-NQVQ-VHSEHAQ-LAVDALLIASGRQP 254 (441)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEEE-EEEcCCe-EEeCEEEEeecCCc
Confidence 35678888899999999999999999998766 6544 6666664 89999999988665
No 140
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.88 E-value=4.2e-08 Score=99.52 Aligned_cols=63 Identities=5% Similarity=0.036 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcC-cEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATKAG-AHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.|-+.|.+.+++.+ ++++++++|++|..++ +.+. |.++++ +++||.||-|-+....+.+.+..
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v~-v~~~~~-~~~adlvIgADG~~S~vR~~l~~ 168 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHN-DYSI-IKFDDK-QIKCNLLIICDGANSKVRSHYFA 168 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcC-CeEE-EEEcCC-EEeeCEEEEeCCCCchhHHhcCC
Confidence 56777888777775 8899999999998877 6665 778777 79999999999988877666643
No 141
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=1.1e-07 Score=101.72 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC---CCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV---DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~---~G~--~~~ad~VI~a~~~~~ 329 (565)
...+.+.|.+.+.+.|++++.++.|+++..++++++.||... +|+ .+.|+.||++++...
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 356888998888889999999999999987632788888763 454 578999999998765
No 142
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.87 E-value=7.1e-08 Score=103.96 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC---CCc--EEecCEEEECCChHH
Q 038727 269 GMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV---DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 269 G~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~---~G~--~~~ad~VI~a~~~~~ 329 (565)
....+...|.+.+.+.|++|+.++.|++|..++ +++.||... +|+ .+.|+.||+|++...
T Consensus 156 tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 156 TGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 345677888888899999999999999999888 898887764 565 467999999999765
No 143
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.87 E-value=1.6e-07 Score=99.49 Aligned_cols=60 Identities=23% Similarity=0.256 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC-------CC-cEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV-------DG-TRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~-------~G-~~~~ad~VI~a~~~~~ 329 (565)
...+.+.|.+.+++.|++|+.++.|+++..+++++++||.+. ++ ..+.|+.||+|++...
T Consensus 143 G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 143 GAEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 357889999999999999999999999987652688888763 22 3588999999998765
No 144
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.87 E-value=1.5e-07 Score=100.60 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC-c--EEec-CEEEECCChHHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG-T--RVHS-SFVLSNATPYKT 330 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G-~--~~~a-d~VI~a~~~~~~ 330 (565)
..+..+|.+.++++|++|+++++|+++..++ +++++|...++ + ++.| +.||+|++....
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH-GRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 4688999999999999999999999998877 99999877543 3 4676 689999988764
No 145
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.87 E-value=1e-07 Score=102.15 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEec-CCCceeEEEeC---CCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIG-DSGEVDGVLLV---DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~-~~~~v~~V~~~---~G~--~~~ad~VI~a~~~~~ 329 (565)
...+.+.|.+.+.+.|++|+.++.++++..+ + +++.||... +|+ .+.|+.||+|++...
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 3568889999888899999999999998876 6 889988763 454 578999999998765
No 146
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.86 E-value=7e-08 Score=102.65 Aligned_cols=42 Identities=40% Similarity=0.636 Sum_probs=39.1
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC--CCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH--VIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~--~~GG~~~ 60 (565)
.++||||||+|.+||+||..++++|.+|+||||.+ ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 56899999999999999999999999999999999 7899764
No 147
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.85 E-value=1.3e-08 Score=105.66 Aligned_cols=48 Identities=38% Similarity=0.546 Sum_probs=41.1
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC-CCCeeeecccCC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHV-IGGAAVTEELIP 66 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~-~GG~~~t~~~~~ 66 (565)
++|||+|||||++|++||..|++.|++|+|+|+++. +||.|....+.+
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP 50 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIP 50 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCcccc
Confidence 369999999999999999999999999999999874 699875544443
No 148
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.85 E-value=9.3e-09 Score=104.50 Aligned_cols=64 Identities=28% Similarity=0.328 Sum_probs=52.7
Q ss_pred ccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCc--EEecCEEEECCChHHH
Q 038727 265 HVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGT--RVHSSFVLSNATPYKT 330 (565)
Q Consensus 265 ~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~--~~~ad~VI~a~~~~~~ 330 (565)
+..+=...+.+.+.+.+++.|++++++++|+++...+ +++ .|.+++|+ ++.+|.|+++++-...
T Consensus 208 iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~-~~v-~v~~~~g~~~~~~ad~vLvAiGR~Pn 273 (454)
T COG1249 208 ILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKD-DGV-LVTLEDGEGGTIEADAVLVAIGRKPN 273 (454)
T ss_pred CCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecC-CeE-EEEEecCCCCEEEeeEEEEccCCccC
Confidence 4455567899999999999889999999999999877 554 48888876 6889999999986653
No 149
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.85 E-value=3.7e-08 Score=100.44 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 269 GMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 269 G~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
....+.+.|.+.+++.|++++++++|++|..++ +.+ .|++ +++++.+|.||+|++...
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~-~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDD-NGF-GVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-CeE-EEEE-CCcEEEcCEEEECCCCcc
Confidence 356789999999999999999999999998765 544 4766 455799999999998754
No 150
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.85 E-value=5.2e-08 Score=102.46 Aligned_cols=59 Identities=20% Similarity=0.292 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeCC-Cc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLVD-GT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~~-G~--~~~ad~VI~a~~~~~ 329 (565)
...+.+.|.+.+++. |++|+.++.|++|..++ ++++||...+ +. .+.|+.||+|++...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD-GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC-CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 457889999888876 89999999999998877 8888887653 32 589999999998764
No 151
>PTZ00058 glutathione reductase; Provisional
Probab=98.84 E-value=9.5e-09 Score=108.16 Aligned_cols=51 Identities=35% Similarity=0.580 Sum_probs=44.1
Q ss_pred cccCCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCC
Q 038727 15 TLKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP 66 (565)
Q Consensus 15 ~~~~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~ 66 (565)
...+.+|||||||||.+|++||..+++.|.+|+|+|++ .+||.|-...|.|
T Consensus 43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiP 93 (561)
T PTZ00058 43 KKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVP 93 (561)
T ss_pred cCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCC
Confidence 34457899999999999999999999999999999996 7999987655544
No 152
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.84 E-value=1.5e-08 Score=106.11 Aligned_cols=47 Identities=36% Similarity=0.693 Sum_probs=41.5
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP 66 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~ 66 (565)
..|||+|||||.+|++||..|++.|++|+|+|+. .+||.|....+.+
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciP 49 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIP 49 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCc
Confidence 4699999999999999999999999999999996 7899886654444
No 153
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.84 E-value=1.9e-07 Score=97.19 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKT 330 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~ 330 (565)
..+.+.|.+.+++.|++++.+ .|+++..++ +++++|.. +|+.+.++.||+|++.+..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKN-GKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 468899999999999999865 899998777 88888877 4567999999999998763
No 154
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.84 E-value=1.1e-07 Score=100.66 Aligned_cols=60 Identities=10% Similarity=0.199 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHc-CcEEEeCcceeEEEecC-CCceeEEEeC-CCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKA-GAHILVNTEVSQIMIGD-SGEVDGVLLV-DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~-~~~v~~V~~~-~G~--~~~ad~VI~a~~~~~ 329 (565)
...+.+.|.+.+++. |++|++++.|+++..++ +++++||... +|+ .+.|+.||+|++...
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 356888998888765 89999999999998763 2678888654 454 378999999998754
No 155
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.83 E-value=3.8e-09 Score=110.09 Aligned_cols=47 Identities=36% Similarity=0.639 Sum_probs=42.2
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP 66 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~ 66 (565)
+|||+|||||++|++||..|+++|++|+|+|+++.+||.|....+.|
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciP 49 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMP 49 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccc
Confidence 59999999999999999999999999999999888999986654444
No 156
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=5.3e-08 Score=104.02 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
...+.+.|.+.+++.|++|++++.|+++..++ +++.||.. .+|+ .+.|+.||++++...
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 45788999998999999999999999998887 88888764 3554 589999999999865
No 157
>PRK08275 putative oxidoreductase; Provisional
Probab=98.83 E-value=1.7e-07 Score=99.75 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEec-CCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIG-DSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~-~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+++.|++|+.++.|++|..+ + +++.||.. .+|+ .+.|+.||+|++...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 467889999899999999999999999987 6 88888864 3564 478999999998765
No 158
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=8.7e-08 Score=102.51 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHH-cCcEEEeCcceeEEEecCCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATK-AGAHILVNTEVSQIMIGDSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
...+.+.|.+.+.+ .|++++.++.|+++..++ ++++||.. .+|+ .+.|+.||+|++...
T Consensus 136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 136 GFYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 34678888888776 589999999999999887 88888764 3554 578999999998765
No 159
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.83 E-value=1.6e-07 Score=100.59 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcC-cEEEeCcceeEEEecCCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAG-AHILVNTEVSQIMIGDSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+++.| ++|+.++.|++|..++ ++++||.. .+|+ .+.|+.||+|++...
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 357778888888876 9999999999998887 88888753 3454 689999999999765
No 160
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.82 E-value=1.1e-07 Score=98.35 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=52.6
Q ss_pred ccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEec--CCCceeEEEeCC-CcEEecCEEEECCChH
Q 038727 265 HVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIG--DSGEVDGVLLVD-GTRVHSSFVLSNATPY 328 (565)
Q Consensus 265 ~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~--~~~~v~~V~~~~-G~~~~ad~VI~a~~~~ 328 (565)
++.++...+.+.|.+.+++.|++|+++++|++|..+ + +++++|...+ +.++.|+.||+|++..
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~-g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFD-GAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCC-CeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 455667789999999999999999999999999876 5 7888887643 3578999999999854
No 161
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.82 E-value=1.4e-07 Score=100.75 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEe--CCCc-EEecCEEEECCChHHHHhhcCCC
Q 038727 273 VSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLL--VDGT-RVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 273 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~--~~G~-~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
+-+.|.+.+.+. |++|+++++|+++..++ +.+. +.+ .+|. ++++|.||.|.+....+.++++.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~ 193 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHD-DGVT-LTVETPDGPYTLEADWVIACDGARSPLREMLGL 193 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcC-CEEE-EEEECCCCcEEEEeCEEEECCCCCcHHHHHcCC
Confidence 445566666665 68999999999999877 6554 333 3454 68999999999988876677654
No 162
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.81 E-value=1.2e-08 Score=100.06 Aligned_cols=77 Identities=29% Similarity=0.350 Sum_probs=52.4
Q ss_pred ccCCchHHHHHHHHHHHHHc-CcEEEeCcceeEEEec--CCCceeEEEeCC--Cc----EEecCEEEECCChHHHHhhcC
Q 038727 265 HVEGGMGSVSLAISKAATKA-GAHILVNTEVSQIMIG--DSGEVDGVLLVD--GT----RVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 265 ~~~gG~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~--~~~~v~~V~~~~--G~----~~~ad~VI~a~~~~~~~~~l~ 335 (565)
++.|.-.+....+...+.++ |.+|++++.|++|..+ + +++++|++.+ +. ++.++.||++++...+ .+||
T Consensus 186 ~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~-~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T-p~LL 263 (296)
T PF00732_consen 186 CPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG-GRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT-PRLL 263 (296)
T ss_dssp ECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS-TEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH-HHHH
T ss_pred ccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc-cceeeeeeeecCCcceeeeccceeEEeccCCCCC-hhhh
Confidence 45555455555555445555 8999999999999765 5 8899998864 32 4678999999999887 5665
Q ss_pred CCCCC-CHH
Q 038727 336 PRDVL-PDD 343 (565)
Q Consensus 336 ~~~~~-~~~ 343 (565)
-..-+ +.+
T Consensus 264 l~SGiG~~~ 272 (296)
T PF00732_consen 264 LRSGIGPKD 272 (296)
T ss_dssp HHTTEE-HH
T ss_pred cccccccHH
Confidence 43334 443
No 163
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.80 E-value=1.3e-08 Score=102.73 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC--CCc--EEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV--DGT--RVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~--~G~--~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.+-+.|.+.+++.|++|+++++|+.+..+. +++..+... +|+ +++||.||-|-+.+..+.+.+..
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~-~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~ 180 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDD-DGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGI 180 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEET-TEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTG
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccc-cccccccccccCCceeEEEEeeeecccCcccchhhhccc
Confidence 577888888999999999999999999887 665533322 243 68999999999988877766643
No 164
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.79 E-value=3.8e-07 Score=95.65 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCcceeEEEecCCCceeEEEeCC-C--cEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATK-AGAHILVNTEVSQIMIGDSGEVDGVLLVD-G--TRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~v~~V~~~~-G--~~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+++ .|++|+.++.|++|..++ +++.+|...+ + ..+.|+.||+|++...
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET-GRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4688899998887 589999999999998887 8888887654 3 3689999999999876
No 165
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.78 E-value=1e-07 Score=93.72 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=40.0
Q ss_pred HHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 276 AISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 276 ~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.+.+.+++.|+++++ ++|++|..++ +.+. |++.+|+++.+|+||+|++...
T Consensus 62 ~l~~~~~~~gv~~~~-~~v~~v~~~~-~~~~-v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 62 KMKEQAVKFGAEIIY-EEVIKVDLSD-RPFK-VKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHcCCeEEE-EEEEEEEecC-CeeE-EEeCCCCEEEeCEEEECCCCCc
Confidence 334446677889988 8999998876 6555 7778888899999999999754
No 166
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.78 E-value=5.3e-09 Score=109.38 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC--C--cEEecCEEEECCChHH
Q 038727 269 GMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD--G--TRVHSSFVLSNATPYK 329 (565)
Q Consensus 269 G~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~--G--~~~~ad~VI~a~~~~~ 329 (565)
....+.+.+.+.+++.|++|+++++|++|..++ +++. |++.+ | +++.+|.||++++...
T Consensus 222 ~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~p 284 (475)
T PRK06327 222 ADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG-KGVS-VAYTDADGEAQTLEVDKLIVSIGRVP 284 (475)
T ss_pred CCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC-CEEE-EEEEeCCCceeEEEcCEEEEccCCcc
Confidence 346778888888999999999999999998776 5554 55444 3 4689999999887655
No 167
>PLN02463 lycopene beta cyclase
Probab=98.77 E-value=8.1e-08 Score=98.52 Aligned_cols=55 Identities=15% Similarity=0.264 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.+-+.|.+.+.+.|++++ +++|++|..++ +++ .|.+++|++++||.||.|.+...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~-~~~-~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEE-SKS-LVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcC-CeE-EEEECCCCEEEcCEEEECcCCCc
Confidence 456677777888899986 68999999876 665 48889998899999999988654
No 168
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.77 E-value=2.9e-08 Score=103.41 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 272 SVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 272 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.+...+.+.+++. |+++ +...|++|..++ +++.+|.+.+|..+.|+.||+|++.+.
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~-grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIVEN-GRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEecC-CEEEEEEECCCCEEECCEEEEeeCcch
Confidence 3456666667665 6787 477899999888 899999999999999999999999653
No 169
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.77 E-value=1.2e-07 Score=96.62 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC------C--cEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD------G--TRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~------G--~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+-+.|.+.+.+.|++++.. .|++|..++ +.+. |.+.+ | .+++||.||.|.+....+.+.++
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~~-v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg 162 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDR-DGVT-LTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELG 162 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcC-CeEE-EEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcC
Confidence 44566777777889999754 699998776 6654 55542 2 36899999999998776666554
No 170
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.76 E-value=2.2e-07 Score=98.80 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCc-eeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGE-VDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~-v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+++.|++|++++.|+++..++ ++ ++||.. .+|+ .+.|+.||++++...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 5688889888888999999999999998876 54 888764 3554 588999999998765
No 171
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.76 E-value=1e-07 Score=95.25 Aligned_cols=57 Identities=9% Similarity=0.107 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC--cEEecCEEEECCChH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG--TRVHSSFVLSNATPY 328 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G--~~~~ad~VI~a~~~~ 328 (565)
..+.++|.+.++++|++++.+++|.++..++ +++++|.+.++ ..++||+||+|++.|
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecCCccceEECCEEEEccCCC
Confidence 4788999999999999999999999999998 88888887776 379999999999988
No 172
>PLN02985 squalene monooxygenase
Probab=98.76 E-value=3.4e-07 Score=96.01 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeC--CCc--EEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLV--DGT--RVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~--~G~--~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.+.+.|.+.+.+. |++++.+ .|+++..++ +.+.+|++. +|+ ++.||.||.|-|....+.+.+..
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~ 216 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLND 216 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhcc
Confidence 5677777777766 5888754 688887776 777677753 565 35689999999988877666643
No 173
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.76 E-value=1.6e-07 Score=97.24 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcC---cEEEeCcceeEEEec------CCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATKAG---AHILVNTEVSQIMIG------DSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~~G---~~i~~~~~V~~I~~~------~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.+.+.|.+.+++.+ ++++++++|++|..+ ++..+ .|++.+|++++||.||-|-+....+.+.+.-
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v-~v~~~~g~~i~a~llVgADG~~S~vR~~~gi 191 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV-HITLSDGQVLYTKLLIGADGSNSNVRKAANI 191 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce-EEEEcCCCEEEeeEEEEecCCCChhHHHcCC
Confidence 45566777777765 899999999999752 21344 4888899999999999998888877776643
No 174
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.75 E-value=1.3e-08 Score=105.95 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.++++|+++++++.|++|..++ ++...|++.+|+++.+|.||++++...
T Consensus 230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~-~~~~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNA-DGSKHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence 36788899999999999999999999998765 443447777788899999999888655
No 175
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.75 E-value=2.2e-07 Score=95.22 Aligned_cols=63 Identities=10% Similarity=0.163 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEe---CCCcEEecCEEEECCChHHHHhhcCC
Q 038727 272 SVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLL---VDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 272 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.|.+.|.+.+.+. |++++++++|+++..++ +++. |++ .+++++.+|.||-|-+.+....+.++
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~-~~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTG-NSIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCC-CceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 5667777777664 78999999999998876 6655 444 34457899999999998887777763
No 176
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.75 E-value=4.5e-07 Score=104.19 Aligned_cols=44 Identities=32% Similarity=0.444 Sum_probs=40.2
Q ss_pred cCCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 17 KDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 17 ~~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
.+.++||||||+|.+||+||..+++.|.+|+|+||.+..||.+.
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 34679999999999999999999999999999999999999753
No 177
>PLN02815 L-aspartate oxidase
Probab=98.75 E-value=2.1e-07 Score=98.95 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCcceeEEEecCCC---ceeEEEeC---CCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKA-GAHILVNTEVSQIMIGDSG---EVDGVLLV---DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~---~v~~V~~~---~G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+++. |++|+.++.++++..++++ +++||... +|+ .+.|+.||+|++...
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 46888888888776 8999999999999875314 27888753 454 568999999998765
No 178
>PRK07538 hypothetical protein; Provisional
Probab=98.75 E-value=1.6e-07 Score=96.66 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHH-cC-cEEEeCcceeEEEecCCCceeEEEeCCC-----cEEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATK-AG-AHILVNTEVSQIMIGDSGEVDGVLLVDG-----TRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~-~G-~~i~~~~~V~~I~~~~~~~v~~V~~~~G-----~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.|-+.|.+.+.+ .| .+|+++++|+++..++ +.++ +.+.++ ++++||.||-|-+......+.+.+
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~-~~~~-~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~ 173 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA-DVTV-VFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYP 173 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC-CceE-EEEeccCCCccceEEeeEEEECCCCCHHHhhhhcC
Confidence 455666666655 46 4799999999998776 5433 444332 479999999999988876666543
No 179
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=2.8e-07 Score=98.47 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcC----cEEEeCcceeEEEec-CCCceeEEEeCC---Cc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAG----AHILVNTEVSQIMIG-DSGEVDGVLLVD---GT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G----~~i~~~~~V~~I~~~-~~~~v~~V~~~~---G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+++.+ ++++.++.++++..+ + ++|+||...+ |+ .+.|+.||++++...
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 467788877776554 779999999999875 5 8899998743 43 478999999998866
No 180
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=3.8e-07 Score=97.54 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCC---CceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDS---GEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~---~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.|.+.+++.|++|+.++.|+++..+++ ++++||.. .+|+ .+.|+.||+|++...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 57888999999999999999999999987642 67888865 3554 578999999998765
No 181
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.74 E-value=1.8e-07 Score=98.34 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC--Cc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD--GT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~--G~--~~~ad~VI~a~~~~~ 329 (565)
..+.++|.+.++ .|++|+.++.|++|..++ +++.||...+ |+ .+.|+.||+|++...
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN-GRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecC-CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 457888888776 689999999999998887 8888887654 33 578999999998765
No 182
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.73 E-value=2.1e-07 Score=93.09 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=46.3
Q ss_pred CCCEEEEcCChhHHHHHHHHHHC----CCcEEEEcccCCCCCeeeecc-cCCCceeccch
Q 038727 20 KWDALVIGGGHNGLIAAAYLARG----GLSVAVLERRHVIGGAAVTEE-LIPGFKFSRCS 74 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~-~~~G~~~d~g~ 74 (565)
+.++-|||+|||+|+||.+|-|. |.+|+|||+.+.+||.+-+.. ...||..-.|.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR 61 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGR 61 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCc
Confidence 35789999999999999999986 579999999999999987655 45688776654
No 183
>PLN02546 glutathione reductase
Probab=98.72 E-value=1.8e-08 Score=106.14 Aligned_cols=59 Identities=12% Similarity=-0.003 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.++++|+++++++.|++|..++ +....+.+.+++...+|.||++++...
T Consensus 292 d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~-~g~v~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 292 DEEVRDFVAEQMSLRGIEFHTEESPQAIIKSA-DGSLSLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred CHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcC-CCEEEEEECCeEEEecCEEEEeecccc
Confidence 34566778888999999999999999998654 333336666665555899999888665
No 184
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.72 E-value=1.6e-07 Score=95.91 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.+.+.|.+.+.+.|++++ ++.|+.+..++ +....|++.+|++++|+.||.|.+...
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 456777777788888885 67899998774 444458888887899999999999876
No 185
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.72 E-value=4.4e-07 Score=94.49 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=36.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCe
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGA 58 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~ 58 (565)
|||+|||+|++|+++|+.|+++|++|+|+|++...||.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence 69999999999999999999999999999999998864
No 186
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.71 E-value=1.1e-08 Score=105.33 Aligned_cols=57 Identities=16% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC---CcEEecCEEEECCChHHHHhhcCCC
Q 038727 279 KAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD---GTRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 279 ~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~---G~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
+.+.+.|++|++++.|.++..++ +++++|++.+ ..++.|+.||-|++-.. +..+.+-
T Consensus 98 ~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~-l~~~aG~ 157 (428)
T PF12831_consen 98 EMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVETKSGRKEIRAKVFIDATGDGD-LAALAGA 157 (428)
T ss_dssp --------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccccccc
Confidence 33567799999999999999998 9999999875 45799999999888554 3555543
No 187
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.71 E-value=3.5e-07 Score=97.88 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHH----cCcEEEeCcceeEEEecCCCceeEEEeC---CCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATK----AGAHILVNTEVSQIMIGDSGEVDGVLLV---DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~----~G~~i~~~~~V~~I~~~~~~~v~~V~~~---~G~--~~~ad~VI~a~~~~~ 329 (565)
..+...|.+.+++ .|++|+++++|+++..+++++++||... +|+ .+.|+.||+|++...
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 3455666555544 3799999999999987542689998864 353 578999999998764
No 188
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.70 E-value=3.4e-07 Score=97.73 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
..|.+.|.+.+.+. |++++.++.|+++..++ +++.||.. .+|+ .+.|+.||+|++...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 46778888877765 79999999999999888 88888754 4563 688999999998765
No 189
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.70 E-value=2.8e-07 Score=97.44 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 273 VSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 273 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
+.+.+.+.+++.|++++++++|++|..++ +... |.+.+|+++.+|.||++++...
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~-~~~~-V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAA-GLIE-VELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecC-CeEE-EEECCCCEEEcCEEEECCCCCc
Confidence 34555566777789999999999998875 5444 7788888899999999999754
No 190
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.69 E-value=9e-07 Score=94.30 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
...|.+.|.+.+.+. |++++.++.|+++..++ +++.||.. .+|+ .+.|+.||+|++...
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 356888888887764 79999999999999888 89988764 3563 678999999998765
No 191
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.69 E-value=1.7e-07 Score=98.43 Aligned_cols=57 Identities=21% Similarity=0.145 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..+.+.+.+.+++.|+++++++.|++|...+ +.+. |++.+|+++.+|.||++++...
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~~-v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKIK-VLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeEE-EEECCCCEEEcCEEEEeeCCCC
Confidence 4567888888999999999999999998765 5444 7777888899999999988765
No 192
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.68 E-value=6.6e-08 Score=95.44 Aligned_cols=53 Identities=23% Similarity=0.405 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCCh
Q 038727 273 VSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATP 327 (565)
Q Consensus 273 l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~ 327 (565)
+.+.+.+.+++. +.+|+ +.+|++|..++ +++.||.+.+|+++.+|.||+|+++
T Consensus 97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTII-QGEVTDLIVEN-GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEEE-ES-EEEEEECT-TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEEE-EcccceEEecC-CeEEEEEeCCCCEEecCEEEEeccc
Confidence 355566667764 56774 78999999999 9999999999999999999999998
No 193
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.66 E-value=7.6e-08 Score=91.48 Aligned_cols=48 Identities=40% Similarity=0.693 Sum_probs=44.0
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIP 66 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~ 66 (565)
.+|||+|||+|++|-.||...++.|.+.+++|++...||.|....+.|
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIP 85 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIP 85 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccc
Confidence 469999999999999999999999999999999999999998765544
No 194
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.65 E-value=5.3e-07 Score=83.81 Aligned_cols=39 Identities=38% Similarity=0.597 Sum_probs=36.5
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
-|||||+|++||+|+..+...|-.|+++|++..+||..-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 599999999999999999999888999999999999864
No 195
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.64 E-value=1.5e-07 Score=90.35 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC------C---------cEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD------G---------TRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~------G---------~~~~ad~VI~a~~~~~ 329 (565)
...+++-|-+.+++.|++|.-+..+.++.++.+|.|.||-++| | -+++|..-|++-+-+-
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccc
Confidence 3478889999999999999999999999987668899998865 2 2578888888766554
No 196
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.64 E-value=2.6e-07 Score=95.24 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~ 335 (565)
.|.+.|.+.+. ++.++++++|++|..++ +++. |.+.+|+++.+|.||.|-+.+....+.+
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~-~~~~-v~~~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQA-EEVQ-VLFTDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecC-CcEE-EEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence 45666666553 35688999999998877 6665 8888898899999999999888766555
No 197
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.63 E-value=4.3e-07 Score=95.88 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 274 SLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 274 ~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.+.+.+.+++.|++++++++|++|..++ +... |.+.+|+.+.+|.||++++...
T Consensus 270 ~~~l~~~l~~~gv~i~~~~~V~~I~~~~-~~~~-v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 270 AANLEEHIKQYPIDLMENQRAKKIETED-GLIV-VTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHhCCeEEcCCEEEEEEecC-CeEE-EEECCCCEEEeCEEEECCCCCc
Confidence 4445555667789999999999998765 5544 7788888899999999998753
No 198
>PRK06996 hypothetical protein; Provisional
Probab=98.63 E-value=7.8e-07 Score=91.09 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC---cEEecCEEEECCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG---TRVHSSFVLSNAT 326 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G---~~~~ad~VI~a~~ 326 (565)
.+.+.|.+.+++.|++++++++|++|..+. +.+. |.+.+| ++++||.||-|-+
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~-~~v~-v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDA-DGVT-LALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecC-CeEE-EEECCCCcceEEeeeEEEECCC
Confidence 567888888899999999999999998776 6655 666654 5799999999866
No 199
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.63 E-value=4.7e-07 Score=86.27 Aligned_cols=37 Identities=35% Similarity=0.491 Sum_probs=34.4
Q ss_pred cCCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 17 KDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 17 ~~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+..+||||||||++|.+.|+.|+|.|.+|+|+||+=
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 4567999999999999999999999999999999973
No 200
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.63 E-value=7.9e-07 Score=90.75 Aligned_cols=36 Identities=36% Similarity=0.499 Sum_probs=33.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
+||+|||||++|++||..|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999986544
No 201
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.62 E-value=1.7e-06 Score=91.63 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHc-CcEEEeCcceeEEEecC-----CCceeEEEeC---CCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKA-GAHILVNTEVSQIMIGD-----SGEVDGVLLV---DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~-----~~~v~~V~~~---~G~--~~~ad~VI~a~~~~~ 329 (565)
..+...|.+.+.+. |++|+.++.|+++..++ +++++||... +|+ .+.|+.||++++...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 46778888877765 89999999999998642 1678888763 354 578999999998765
No 202
>PRK02106 choline dehydrogenase; Validated
Probab=98.61 E-value=2.4e-07 Score=98.96 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=44.5
Q ss_pred HHHHHHHHH-HcCcEEEeCcceeEEEecCCCceeEEEeCCC--c--EEecCEEEECCChHHHHhhcC
Q 038727 274 SLAISKAAT-KAGAHILVNTEVSQIMIGDSGEVDGVLLVDG--T--RVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 274 ~~~l~~~l~-~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G--~--~~~ad~VI~a~~~~~~~~~l~ 335 (565)
..++...+. ..+.+|++++.|++|..++ +++++|++.+. . .+.++.||+|++...+ .+||
T Consensus 203 ~~~~l~~a~~~~nl~i~~~a~V~rI~~~~-~~a~GV~~~~~~~~~~~~~ak~VILaaGai~T-P~LL 267 (560)
T PRK02106 203 ARAYLDPALKRPNLTIVTHALTDRILFEG-KRAVGVEYERGGGRETARARREVILSAGAINS-PQLL 267 (560)
T ss_pred HHHhhccccCCCCcEEEcCCEEEEEEEeC-CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCC-HHHH
Confidence 444444333 3469999999999999987 89999998543 2 4578999999998876 3443
No 203
>PRK11445 putative oxidoreductase; Provisional
Probab=98.57 E-value=1.6e-06 Score=87.19 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=40.4
Q ss_pred HHcCcEEEeCcceeEEEecCCCceeEEEe-CCCc--EEecCEEEECCChHHHHhhcCC
Q 038727 282 TKAGAHILVNTEVSQIMIGDSGEVDGVLL-VDGT--RVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 282 ~~~G~~i~~~~~V~~I~~~~~~~v~~V~~-~~G~--~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+.|+++++++.|++|..++ +.+. |.+ .+|+ +++||.||.|.+....+.+.+.
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~-~~~~-v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~ 164 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWRED-DGYH-VIFRADGWEQHITARYLVGADGANSMVRRHLY 164 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcC-CEEE-EEEecCCcEEEEEeCEEEECCCCCcHHhHHhc
Confidence 35689999999999998876 6655 554 5664 6899999999998776555553
No 204
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.56 E-value=2.5e-07 Score=96.50 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.++++|++++++++|++|..++ +++. |.+.+|+++.+|.||++++...
T Consensus 217 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~~-v~~~~g~~l~~D~vl~a~G~~p 274 (466)
T PRK07845 217 DADAAEVLEEVFARRGMTVLKRSRAESVERTG-DGVV-VTLTDGRTVEGSHALMAVGSVP 274 (466)
T ss_pred CHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC-CEEE-EEECCCcEEEecEEEEeecCCc
Confidence 34567788888999999999999999998766 6554 7777888899999999887655
No 205
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.55 E-value=1.5e-05 Score=79.28 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHH-cCcEEEeCcceeEEEecCCC-ceeEEEeCCC----cEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATK-AGAHILVNTEVSQIMIGDSG-EVDGVLLVDG----TRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~-~v~~V~~~~G----~~~~ad~VI~a~~~~~ 329 (565)
..+.++|.+.+++ .+++|+.++.+.+|..++ + .+.||.+.+. ..+.++.||++++...
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIED-GIGVAGVLVLNRNGELGTFRAKAVVLATGGLG 196 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcC-CceEeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence 4678888888877 589999999999999998 7 5558887543 3688899999887643
No 206
>PRK09897 hypothetical protein; Provisional
Probab=98.55 E-value=2.7e-06 Score=88.76 Aligned_cols=54 Identities=9% Similarity=0.056 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcC--cEEEeCcceeEEEecCCCceeEEEeCC-CcEEecCEEEECCCh
Q 038727 272 SVSLAISKAATKAG--AHILVNTEVSQIMIGDSGEVDGVLLVD-GTRVHSSFVLSNATP 327 (565)
Q Consensus 272 ~l~~~l~~~l~~~G--~~i~~~~~V~~I~~~~~~~v~~V~~~~-G~~~~ad~VI~a~~~ 327 (565)
...+.+.+.+.+.| ++++.+++|++|..++ +++. |.+.+ |..+.||+||+|++.
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~~-V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGVM-LATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEEE-EEECCCCeEEEcCEEEECCCC
Confidence 34555666677777 6888899999998887 6655 76655 467899999999985
No 207
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.53 E-value=8.9e-07 Score=92.30 Aligned_cols=56 Identities=18% Similarity=0.351 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHc-CcEEEeCcceeEEEec-CCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 272 SVSLAISKAATKA-GAHILVNTEVSQIMIG-DSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 272 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~-~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.+...+.+.+++. |++++ ...|+++..+ + +++.+|.+.+|..+.|+.||+|++.+.
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCccc
Confidence 4566777778877 56775 5678888776 6 889999999998999999999999884
No 208
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.52 E-value=6.6e-06 Score=81.62 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeC-----CCcEEecCEEEECCChHHH
Q 038727 270 MGSVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLV-----DGTRVHSSFVLSNATPYKT 330 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~-----~G~~~~ad~VI~a~~~~~~ 330 (565)
++.|.+.|.+.+++. |++++++++|++|...+++... |.+. +..++.|+.|++.++...+
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~-v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWE-VKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEE-EEEEecCCCCeEEEECCEEEECCchHhH
Confidence 578999999999998 8999999999999988735444 5543 2347999999999998873
No 209
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.51 E-value=1.4e-07 Score=98.41 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC---cEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG---TRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G---~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.+++.|++|++++.+++|...+ +.+. |++.++ +++.+|.||++++...
T Consensus 219 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~~-v~~~~~~~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 219 DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-AKVK-VTFTDSTNGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeEE-EEEecCCcceEEEeCEEEEEecCCc
Confidence 35677888889999999999999999998765 5543 665555 3799999999988665
No 210
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.50 E-value=6.8e-06 Score=87.59 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCC--CceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDS--GEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~--~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
..+.+.+...+.+.+++|+.++.|+++..+++ |+++||.. .+|+ .+.|+.||+|++.+.
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 35566666667777789999999999998642 58888875 3454 578999999999875
No 211
>PTZ00367 squalene epoxidase; Provisional
Probab=98.50 E-value=1.3e-06 Score=92.24 Aligned_cols=35 Identities=31% Similarity=0.559 Sum_probs=33.1
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.++||||||||++|+++|..|+++|++|+|+|++.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999975
No 212
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=9.5e-06 Score=77.23 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=48.4
Q ss_pred ccccccCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEEC
Q 038727 261 NLWSHVEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSN 324 (565)
Q Consensus 261 g~~~~~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a 324 (565)
..|.||+-|.+.|++.+++...-.|+.+.+|+++.+|...+ . |.+|.. ++.+..|..||..
T Consensus 219 ~pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk-~-v~~v~~-~~~~~ka~KiI~~ 279 (434)
T COG5044 219 SPYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETK-D-VETVDK-GSLTQKAGKIISS 279 (434)
T ss_pred CcceeeccCchhhhHHHHHhhhccCceeecCcchhhhcccc-c-eeeeec-CcceeecCcccCC
Confidence 34568998999999999999888899999999999998776 3 333433 3446889998874
No 213
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.47 E-value=2.9e-06 Score=87.67 Aligned_cols=57 Identities=16% Similarity=0.367 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.+.+.|.+.+++.|++++.+ .|+++..++++.+.+|++.+|++++||.||=|.+...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 56778888899999999877 4888877653778899999999999999999888654
No 214
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.46 E-value=3.1e-06 Score=91.27 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCc--EEEeCcceeEEEecCCC--ceeEEEeC------CC--cEEecCEEEECCChHHHHhhcCCC
Q 038727 272 SVSLAISKAATKAGA--HILVNTEVSQIMIGDSG--EVDGVLLV------DG--TRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~--~i~~~~~V~~I~~~~~~--~v~~V~~~------~G--~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.+-+.|.+.+.+.|+ +++++++|+++..++++ .|+ |++. +| ++++||+||-|=+.+.+..+.++-
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi 218 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT-VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGR 218 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE-EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCC
Confidence 355677777777764 77889999999876412 243 5553 35 579999999999988887777743
No 215
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.46 E-value=1.9e-06 Score=87.13 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.+-+.+.+.+. .++.+++++.|++|..++ +.+. |++++|++++|+.||-+.++..
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~-~~~~-v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETG-DGVL-VVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecC-ceEE-EEECCCCEEEeeEEEECCCccc
Confidence 45566667677 556788899999999887 6444 8889998999999999877443
No 216
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.46 E-value=9.3e-07 Score=86.66 Aligned_cols=58 Identities=31% Similarity=0.389 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPY 328 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~ 328 (565)
...+++.+.+.++++|++|+++++|+.|..++ +.+.+|.+++|+++.+|+||++.+-.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccCCcEEecCEEEEccCcc
Confidence 34778999999999999999999999999998 88889999999999999999987744
No 217
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.45 E-value=7.6e-07 Score=94.61 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=45.7
Q ss_pred HHHHHHHHHHH-HcCcEEEeCcceeEEEecCCCceeEEEeCCC-c---EEecCEEEECCChHHHHhhcC
Q 038727 272 SVSLAISKAAT-KAGAHILVNTEVSQIMIGDSGEVDGVLLVDG-T---RVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 272 ~l~~~l~~~l~-~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G-~---~~~ad~VI~a~~~~~~~~~l~ 335 (565)
+....+...+. ..|.+|++++.|++|..++ ++++||++.++ . .+.++.||++++...+ .+||
T Consensus 194 s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~S-P~LL 260 (532)
T TIGR01810 194 SAARAYLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKKGGRKEHTEANKEVILSAGAINS-PQLL 260 (532)
T ss_pred cHHHHHhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCC-HHHH
Confidence 33444444444 4469999999999999988 99999998543 2 3578999999998665 4444
No 218
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.45 E-value=2.5e-07 Score=95.09 Aligned_cols=56 Identities=29% Similarity=0.518 Sum_probs=46.6
Q ss_pred ccCCCCCEEEEcCChhHHHHHHHHHHCCCc-EEEEcccCCCCCeeeecccCCCceecc
Q 038727 16 LKDKKWDALVIGGGHNGLIAAAYLARGGLS-VAVLERRHVIGGAAVTEELIPGFKFSR 72 (565)
Q Consensus 16 ~~~~~~dViIIGaGiaGL~aA~~La~~G~~-V~vlE~~~~~GG~~~t~~~~~G~~~d~ 72 (565)
+..+++||+|||||++||++|++|.++|.. ++||||++.+||..+.+. .+|...+.
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~r-y~~l~~~~ 60 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR-YPGLRLDS 60 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhcc-CCceEECC
Confidence 345779999999999999999999999998 999999999999976654 44444433
No 219
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.44 E-value=4.3e-06 Score=78.51 Aligned_cols=45 Identities=36% Similarity=0.596 Sum_probs=38.0
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHC----CCcEEEEcccCC---------CCCeeeecc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARG----GLSVAVLERRHV---------IGGAAVTEE 63 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~----G~~V~vlE~~~~---------~GG~~~t~~ 63 (565)
.+.||+|||||..|+++|+.|.++ |.+|+|+|+++. +||.|..|.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS 142 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS 142 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecc
Confidence 367999999999999999999864 799999999875 467776654
No 220
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.43 E-value=4.5e-06 Score=78.17 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCc--EEecCEEEECCChHH
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~--~~~ad~VI~a~~~~~ 329 (565)
.+-+.|.+.+++.|+.+..+-+|.+....+ ++|+.|.+.+.. .++||.+|++.+...
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecccccCCCChhHeeeeccccc
Confidence 567888899999999999999999999999 999999998865 468898888877554
No 221
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.42 E-value=3.2e-05 Score=72.11 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCc----eeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGE----VDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~----v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
+.+...+.+..+..|+++.+|-+|+.|..++ .. -+.|.-..|++++...||-|++...
T Consensus 196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~-~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNK-EATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred HHHHHHHHHHHHHhcccccccceeccchhcc-CCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 4677888888999999999999999998776 32 2223333467899999998887664
No 222
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.42 E-value=1.6e-06 Score=86.21 Aligned_cols=58 Identities=22% Similarity=0.203 Sum_probs=49.1
Q ss_pred cCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCc-EEecCEEEECCChHH
Q 038727 266 VEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGT-RVHSSFVLSNATPYK 329 (565)
Q Consensus 266 ~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~-~~~ad~VI~a~~~~~ 329 (565)
...-..++.+...+.++++|++|+++++|++|..+. |.+.+|+ ++.++.||++++...
T Consensus 204 Lp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 204 LPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEccCCeeEecCEEEEcCCCcC
Confidence 334456788888899999999999999999998765 7888887 499999999998776
No 223
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.41 E-value=3.2e-05 Score=78.78 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcC
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~ 335 (565)
..++.+|.+.+++ |++|+.+++|++|..++ +++ .|++.+|..++||+||+|++++. ..+.
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~~-~v~t~~g~~~~a~~vV~a~G~~~--~~l~ 194 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG-EGW-QLLDANGEVIAASVVVLANGAQA--GQLA 194 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-CeE-EEEeCCCCEEEcCEEEEcCCccc--cccc
Confidence 6788999999988 99999999999999877 664 48888887789999999999887 3454
No 224
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.40 E-value=1e-05 Score=91.11 Aligned_cols=36 Identities=47% Similarity=0.666 Sum_probs=33.9
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~ 54 (565)
.++||+|||||++||+||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999875
No 225
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.36 E-value=4.5e-07 Score=93.54 Aligned_cols=38 Identities=42% Similarity=0.682 Sum_probs=35.4
Q ss_pred ccCCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 16 LKDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 16 ~~~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+.+.++||+|||||++|++||..|+++|++|+|+|++.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 55678999999999999999999999999999999975
No 226
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.32 E-value=6.7e-07 Score=93.41 Aligned_cols=47 Identities=32% Similarity=0.417 Sum_probs=41.7
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELI 65 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~ 65 (565)
.+|||+|||||.+|++||..|++.|++|+|+|+.+.+||.|....+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gci 49 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCI 49 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcc
Confidence 46999999999999999999999999999999988899987554433
No 227
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.31 E-value=3.9e-06 Score=77.03 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcC-cEEEeCcceeEEEecCCCceeEEEeC---C-CcEEecCEEEECCChHHHHhhcCCC
Q 038727 271 GSVSLAISKAATKAG-AHILVNTEVSQIMIGDSGEVDGVLLV---D-GTRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~v~~V~~~---~-G~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
+.+++.++..+++.| +++.++ .|.++..+. +++.+|-.+ + +....++++|++++||. .+|++.
T Consensus 147 ~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk-~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT--skllp~ 214 (380)
T KOG2852|consen 147 YLFCHFILSEAEKRGGVKLVFG-KVKEVSDEK-HRINSVPKAEAEDTIIKADVHKIVVSAGPWT--SKLLPF 214 (380)
T ss_pred HHHHHHHHHHHHhhcCeEEEEe-eeEEeeccc-ccccccchhhhcCceEEeeeeEEEEecCCCc--hhhccc
Confidence 367888888888887 788765 588887665 777666655 2 33456778999999998 577764
No 228
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.31 E-value=5.1e-06 Score=87.72 Aligned_cols=66 Identities=24% Similarity=0.221 Sum_probs=47.2
Q ss_pred CchHHHHHHHHHHHHHc-CcEEEeCcceeEEEecCCCceeEEEeCC--C---c-EEecCEEEECCChHHHHhhcC
Q 038727 268 GGMGSVSLAISKAATKA-GAHILVNTEVSQIMIGDSGEVDGVLLVD--G---T-RVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 268 gG~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~v~~V~~~~--G---~-~~~ad~VI~a~~~~~~~~~l~ 335 (565)
|...+-..++...+.++ +.+|++++.|++|..++ +++++|++.. + + .+.++.||++++...+ .+|+
T Consensus 199 g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~-~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S-p~LL 271 (542)
T COG2303 199 GRRWSAARAYLKPALKRPNLTLLTGARVRRILLEG-DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS-PKLL 271 (542)
T ss_pred CeEeechhhcchhHhcCCceEEecCCEEEEEEEEC-CeeEEEEEEeCCCCceEEEecCceEEEeccccCC-HHHH
Confidence 33344455555555555 48999999999999999 9988888753 2 2 2567899999888776 4443
No 229
>PRK14694 putative mercuric reductase; Provisional
Probab=98.30 E-value=8.2e-07 Score=92.85 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.+++.|+++++++.|++|..++ +.+. +.+.++ ++.+|.||++++...
T Consensus 217 ~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-~~~~-v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 217 DPAVGEAIEAAFRREGIEVLKQTQASEVDYNG-REFI-LETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEEE-EEECCC-EEEeCEEEEccCCCC
Confidence 35678889999999999999999999998765 5443 655555 599999999987665
No 230
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=2.1e-05 Score=75.73 Aligned_cols=118 Identities=13% Similarity=0.147 Sum_probs=79.0
Q ss_pred HHHHHHHhccHHHHHHcccCChHHHHHHHH-HHHhccCCCCCCCh--hHHHHHH---HHhccccCCCccccccCCchHHH
Q 038727 200 VDFMDILLSPTTKILNKWFESDVLKATVAA-DAITGSMASIHAPG--SGYVLLH---HVMGETDGDRNLWSHVEGGMGSV 273 (565)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~~g~~~~~~~~~--~~~~~~~---~~~~~~~~~~g~~~~~~gG~~~l 273 (565)
....++..+++.++|......+.++.++.. .++.+ ...+. ..+.... ..++ .+....+.||--|.+.|
T Consensus 215 ~~~~~~~e~~F~EyL~~~rltp~lqs~vl~aIaM~~----~~~~tt~eGm~at~~fl~slG--rfgntpfLfPlYGqGEL 288 (547)
T KOG4405|consen 215 DEYVEFRERPFSEYLKTMRLTPKLQSIVLHAIAMLS----ESQLTTIEGMDATKNFLTSLG--RFGNTPFLFPLYGQGEL 288 (547)
T ss_pred HHHHHhhcCcHHHHHHhcCCChhhHHHHHHHHHhcC----cccccHHHHHHHHHHHHHHhh--ccCCCcceeeccCCCcc
Confidence 344556678999999998888888877653 23332 22111 1221111 2222 22333567899999999
Q ss_pred HHHHHHHHHHcCcEEEeCcceeEEEecCCCce--eEEEeCCCcEEecCEEEEC
Q 038727 274 SLAISKAATKAGAHILVNTEVSQIMIGDSGEV--DGVLLVDGTRVHSSFVLSN 324 (565)
Q Consensus 274 ~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v--~~V~~~~G~~~~ad~VI~a 324 (565)
++++.+.+.-.|+-..++.+|+.|..++ +.. ..+....|+.+.+.++|+.
T Consensus 289 pQcFCRlcAVfGgIYcLr~~Vq~ivldk-~s~~~~~~l~s~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 289 PQCFCRLCAVFGGIYCLRRPVQAIVLDK-ESLDCKAILDSFGQRINAKNFVVS 340 (547)
T ss_pred hHHHHHHHHHhcceEEeccchhheeecc-cccchhhhHhhhcchhcceeeeec
Confidence 9999999999999999999999999876 432 3233456777888887764
No 231
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.27 E-value=8e-06 Score=84.22 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPY 328 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~ 328 (565)
..+.+.+.+.++++|++++++++|++|..+ .|++++|+++.+|.||++++..
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCC
Confidence 467888889999999999999999999632 2678899999999999987743
No 232
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.27 E-value=5.2e-06 Score=84.88 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..+.+.+.+.+++.|++++++++|++|.. + +.+ .|++.+|+++.+|.||++++...
T Consensus 186 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~-~~~-~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 186 PPVQRYLLQRHQQAGVRILLNNAIEHVVD-G-EKV-ELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEEc-C-CEE-EEEECCCCEEECCEEEECCCCCh
Confidence 35567778888999999999999999975 3 444 37788898999999999988654
No 233
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.26 E-value=1.5e-06 Score=89.56 Aligned_cols=43 Identities=26% Similarity=0.374 Sum_probs=39.4
Q ss_pred CCCCEEEEcCChhHHHHHHHHHH--CCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLAR--GGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~--~G~~V~vlE~~~~~GG~~~t 61 (565)
...+|+|||||++||+||..|++ .|++|+|||+.+.+||.++.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 45689999999999999999997 79999999999999998864
No 234
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=1.1e-06 Score=92.04 Aligned_cols=42 Identities=38% Similarity=0.674 Sum_probs=38.7
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
++|||+|||||++|++||.+|++.|++|+|+|+ +.+||.|..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN 43 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence 459999999999999999999999999999999 788998754
No 235
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.24 E-value=1.2e-06 Score=97.93 Aligned_cols=42 Identities=40% Similarity=0.525 Sum_probs=39.6
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
...+|+|||||+|||+||++|+++|++|+|||+++.+||.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 357899999999999999999999999999999999999975
No 236
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.23 E-value=1.3e-06 Score=96.74 Aligned_cols=43 Identities=37% Similarity=0.590 Sum_probs=40.1
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
..+||+|||||+|||+||+.|++.|++|+|+|+++.+||.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4579999999999999999999999999999999999999854
No 237
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.22 E-value=2.1e-05 Score=68.84 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCcEEE-eCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCCh
Q 038727 275 LAISKAATKAGAHIL-VNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATP 327 (565)
Q Consensus 275 ~~l~~~l~~~G~~i~-~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~ 327 (565)
+.+.+.+ ..|++|. .+.+|+.|...+ ++.. |.+.+|..+.||+||+|++.
T Consensus 105 ~~~~~~~-~~~i~v~~~~~~V~~i~~~~-~~~~-v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 105 DRLLARL-PAGITVRHVRAEVVDIRRDD-DGYR-VVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHhh-cCCcEEEEEeeEEEEEEEcC-CcEE-EEECCCCEEEeCEEEECCCC
Confidence 3333334 3454443 467999999987 6654 88899999999999999874
No 238
>PRK14727 putative mercuric reductase; Provisional
Probab=98.22 E-value=1.8e-06 Score=90.51 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKT 330 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~ 330 (565)
...+.+.+.+.+++.|++++++++|++|..++ +.+. |.+.++ ++.+|.||++++....
T Consensus 227 d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-~~~~-v~~~~g-~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 227 DPLLGETLTACFEKEGIEVLNNTQASLVEHDD-NGFV-LTTGHG-ELRAEKLLISTGRHAN 284 (479)
T ss_pred hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC-CEEE-EEEcCC-eEEeCEEEEccCCCCC
Confidence 45678888899999999999999999998766 5544 666666 4899999999987763
No 239
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.21 E-value=1.6e-06 Score=88.03 Aligned_cols=44 Identities=43% Similarity=0.490 Sum_probs=40.5
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeec
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTE 62 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 62 (565)
...+|+|||||.|||++|..|.+.|++|+||||.+.+||.....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 34789999999999999999999999999999999999997653
No 240
>PRK13748 putative mercuric reductase; Provisional
Probab=98.19 E-value=1.6e-06 Score=93.08 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.+++.|++|++++.|++|..++ +.+. +.+.++ ++.+|.||++++...
T Consensus 309 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-~~~~-v~~~~~-~i~~D~vi~a~G~~p 365 (561)
T PRK13748 309 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-GEFV-LTTGHG-ELRADKLLVATGRAP 365 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEE-EEecCC-eEEeCEEEEccCCCc
Confidence 45678888999999999999999999998766 6544 666666 599999999988765
No 241
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.18 E-value=1.6e-06 Score=85.21 Aligned_cols=43 Identities=40% Similarity=0.542 Sum_probs=39.9
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeec
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTE 62 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 62 (565)
..+++|||||++|++||..|++.|++|.++||++.+||++...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 4579999999999999999999999999999999999997654
No 242
>PRK12831 putative oxidoreductase; Provisional
Probab=98.18 E-value=2e-06 Score=89.31 Aligned_cols=42 Identities=40% Similarity=0.539 Sum_probs=39.5
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
...||+|||||++||+||++|++.|++|+|+|+++.+||.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 457999999999999999999999999999999999999874
No 243
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.9e-06 Score=83.48 Aligned_cols=40 Identities=50% Similarity=0.792 Sum_probs=33.1
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCc-EEEEcccCCCCCee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLS-VAVLERRHVIGGAA 59 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~-V~vlE~~~~~GG~~ 59 (565)
+.+||+|||||++||+||.++++++.+ ++|+|+ ..+||..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~ 42 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQL 42 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCcc
Confidence 569999999999999999999999999 555555 5566554
No 244
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.16 E-value=2e-06 Score=89.95 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC---CCcEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV---DGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~---~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.+++.|++++++++|++|..++ +... +++. +++++.+|.||++++...
T Consensus 206 d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~~~-v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 206 EPEISAAVEEALAEEGIEVVTSAQVKAVSVRG-GGKI-ITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC-CEEE-EEEEeCCCceEEEeCEEEEeECCCc
Confidence 34577788888999999999999999998765 4433 4443 235799999999888654
No 245
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.16 E-value=1e-05 Score=83.73 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..+.+.+.+.+++.|++++++++|++|.. . .|++.+|+++.+|.||++++...
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCCCc
Confidence 45777888889999999999999999952 2 26677788899999999888654
No 246
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.16 E-value=2.5e-06 Score=90.90 Aligned_cols=42 Identities=33% Similarity=0.651 Sum_probs=38.0
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
..|||+|||||++||+||..|+++|++|+|+|++ ..||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 3599999999999999999999999999999995 68887754
No 247
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.12 E-value=2e-05 Score=87.33 Aligned_cols=58 Identities=9% Similarity=0.149 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.++++|++|++++.|++|..++.+.+..|.+.+|+++.+|.||++++...
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 4567788889999999999999999976431345568889999999999999988665
No 248
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.11 E-value=1.8e-05 Score=82.40 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..+.+.+.+.+++.|++++++++|++|.. + +++..+.++++ ++.+|.||++++...
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~-~-~~~~~v~~~~~-~i~~d~vi~a~G~~p 246 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG-E-DKVEGVVTDKG-EYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec-C-CcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence 46778888889999999999999999964 3 55555666555 699999999988653
No 249
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.10 E-value=3.4e-06 Score=93.03 Aligned_cols=43 Identities=42% Similarity=0.623 Sum_probs=40.0
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
...+|+|||||++||+||+.|+++|++|+|+|+++.+||.+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 4568999999999999999999999999999999999999854
No 250
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.09 E-value=3.6e-06 Score=81.86 Aligned_cols=36 Identities=39% Similarity=0.558 Sum_probs=33.2
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
+.+||||||||+||++|..|.++|++|+|||+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 468999999999999999999999999999997654
No 251
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.07 E-value=1.7e-05 Score=80.61 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..+.+.+.+.+++.|++++++++|++|..++ +.+ .|++.+|+++.+|.||++++...
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD-SGI-RATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEccC-CEE-EEEEcCCcEEECCEEEECcCCCc
Confidence 3466778888999999999999999998765 544 47888999999999999988654
No 252
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.05 E-value=6.1e-06 Score=93.62 Aligned_cols=43 Identities=35% Similarity=0.567 Sum_probs=40.2
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
..+||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999998754
No 253
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.04 E-value=6e-06 Score=85.68 Aligned_cols=42 Identities=40% Similarity=0.550 Sum_probs=39.4
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
..+||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 457999999999999999999999999999999999999874
No 254
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.04 E-value=3.4e-06 Score=88.42 Aligned_cols=40 Identities=40% Similarity=0.518 Sum_probs=34.7
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
.+|+|||||++||++|..|.+.|++|++|||++.+||..+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 5799999999999999999999999999999999999875
No 255
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.03 E-value=6.5e-06 Score=89.59 Aligned_cols=43 Identities=37% Similarity=0.562 Sum_probs=39.8
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
...+|+|||||++||+||..|++.|++|+|+|+.+.+||....
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 4568999999999999999999999999999999999998753
No 256
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.02 E-value=6.9e-06 Score=88.03 Aligned_cols=48 Identities=33% Similarity=0.512 Sum_probs=42.2
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEccc-CCCCCeeeecccCC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERR-HVIGGAAVTEELIP 66 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~-~~~GG~~~t~~~~~ 66 (565)
.+|||||||+|.+|..||..+++.|.+|+|+|++ ..+||.|-...|.|
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiP 163 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIP 163 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcc
Confidence 4799999999999999999999999999999985 47999987665554
No 257
>PRK10262 thioredoxin reductase; Provisional
Probab=98.02 E-value=6.4e-06 Score=81.76 Aligned_cols=42 Identities=33% Similarity=0.493 Sum_probs=37.2
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
+.+||+|||||++||+||..|++.|++|+|+|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 6789999999999999999999999999999965 57887643
No 258
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.01 E-value=5.5e-06 Score=93.50 Aligned_cols=42 Identities=40% Similarity=0.540 Sum_probs=39.2
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
...||+|||||++||+||..|+++|++|+|||+.+.+||.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 346899999999999999999999999999999999999875
No 259
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.99 E-value=7.6e-06 Score=87.13 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLV 335 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~ 335 (565)
.|.+.|.+.+.. ..++++++|++|..++ ++++ |++.+|+++.+|.||.|-+.+....+.+
T Consensus 195 ~L~~~L~~alg~--~~i~~g~~V~~I~~~~-d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~~l 254 (668)
T PLN02927 195 TLQQILARAVGE--DVIRNESNVVDFEDSG-DKVT-VVLENGQRYEGDLLVGADGIWSKVRNNL 254 (668)
T ss_pred HHHHHHHhhCCC--CEEEcCCEEEEEEEeC-CEEE-EEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence 455555443321 2477899999999887 7776 8888998899999999999887665554
No 260
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.98 E-value=9.5e-06 Score=82.46 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=37.8
Q ss_pred CCCEEEEcCChhHHHHHHHHH-HCCCcEEEEcccCCCCCeeee
Q 038727 20 KWDALVIGGGHNGLIAAAYLA-RGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La-~~G~~V~vlE~~~~~GG~~~t 61 (565)
..+|+|||||++||.||.+|+ +.|++|+|||+.+.+||.++.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 457999999999999999765 679999999999999999864
No 261
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.95 E-value=1.1e-05 Score=84.39 Aligned_cols=42 Identities=43% Similarity=0.563 Sum_probs=39.2
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
..+||+|||||++||+||..|+++|++|+|+|+.+.+||...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 456899999999999999999999999999999999999864
No 262
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.95 E-value=9.9e-06 Score=89.66 Aligned_cols=42 Identities=40% Similarity=0.522 Sum_probs=39.3
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
..+||+|||||++||+||..|+++|++|+|||+.+.+||...
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 457899999999999999999999999999999999999875
No 263
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.95 E-value=0.00021 Score=68.33 Aligned_cols=56 Identities=29% Similarity=0.420 Sum_probs=45.7
Q ss_pred CCCEEEEcCChhHHHHHHHHHHC----CCcEEEEcccCCCCCeeeecc-cCCCceeccchh
Q 038727 20 KWDALVIGGGHNGLIAAAYLARG----GLSVAVLERRHVIGGAAVTEE-LIPGFKFSRCSY 75 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~-~~~G~~~d~g~~ 75 (565)
+..+-|||+|++||++|..|-|. |.++.|+|--+..||..-... ...||....|-.
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRe 82 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGRE 82 (587)
T ss_pred cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHH
Confidence 35689999999999999999886 679999999999999875443 466887766653
No 264
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.93 E-value=9.4e-06 Score=81.80 Aligned_cols=37 Identities=35% Similarity=0.671 Sum_probs=34.2
Q ss_pred CEEEEcCChhHHHHHHHHHHC--CCcEEEEcccCCCCCe
Q 038727 22 DALVIGGGHNGLIAAAYLARG--GLSVAVLERRHVIGGA 58 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~--G~~V~vlE~~~~~GG~ 58 (565)
||+|||||++||++|+.|+++ |++|+|+|+.+..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999997 9999999999877763
No 265
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=1.9e-05 Score=79.33 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=39.2
Q ss_pred HHHHHHHHHc-CcEEEeCcceeEEEecCCC-ceeEEEeCCCcEEecCEEEECCChH
Q 038727 275 LAISKAATKA-GAHILVNTEVSQIMIGDSG-EVDGVLLVDGTRVHSSFVLSNATPY 328 (565)
Q Consensus 275 ~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~-~v~~V~~~~G~~~~ad~VI~a~~~~ 328 (565)
+.+.+.++.. +..| ....|+++..++ + +++||.+.+|..+.|+.||+|++-.
T Consensus 104 ~~mk~~le~~~NL~l-~q~~v~dli~e~-~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 104 RAMKNELENQPNLHL-LQGEVEDLIVEE-GQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred HHHHHHHhcCCCcee-hHhhhHHHhhcC-CCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 3444445544 3444 467888888877 6 5999999999999999999998854
No 266
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.93 E-value=1.1e-05 Score=80.62 Aligned_cols=36 Identities=39% Similarity=0.380 Sum_probs=33.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.||+|||||++|+.||+.|++.|++|+|+|+.+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 589999999999999999999999999999977543
No 267
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.92 E-value=1.4e-05 Score=83.29 Aligned_cols=43 Identities=40% Similarity=0.560 Sum_probs=39.8
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
...+|+|||||++||+||..|++.|++|+|+|+.+.+||....
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF 182 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence 4578999999999999999999999999999999999998753
No 268
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.90 E-value=1.6e-05 Score=86.09 Aligned_cols=51 Identities=41% Similarity=0.617 Sum_probs=42.9
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCCceec
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPGFKFS 71 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G~~~d 71 (565)
...+|+|||||++||++|+.|++.|++|+|+|+++.+||.... . .+.|+++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~-g-ip~~~l~ 359 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF-G-IPPFKLD 359 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec-c-CCcccCC
Confidence 3578999999999999999999999999999999999998753 2 3444433
No 269
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.90 E-value=1.5e-05 Score=86.53 Aligned_cols=42 Identities=33% Similarity=0.522 Sum_probs=39.3
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
..++|+|||||++||+||..|++.|++|+|+|+++.+||...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 346899999999999999999999999999999999999875
No 270
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.90 E-value=1.6e-05 Score=83.00 Aligned_cols=42 Identities=40% Similarity=0.536 Sum_probs=39.0
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
..++|+|||||++||++|..|++.|++|+|+|+++.+||...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 457899999999999999999999999999999999999864
No 271
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.89 E-value=1.2e-05 Score=82.09 Aligned_cols=41 Identities=41% Similarity=0.539 Sum_probs=39.3
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
.+|+|||||++||+||..|+++|++|+|+|+.+.+||.+..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 68999999999999999999999999999999999999854
No 272
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.86 E-value=0.00011 Score=81.63 Aligned_cols=55 Identities=13% Similarity=0.278 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChH
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPY 328 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~ 328 (565)
.+.+.+.+.++++|++|++++.|++|..+ +++.+|++.+|+++.+|.||++++..
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECCCCEEEcCEEEECCCCC
Confidence 45667778889999999999999999754 45667889999999999999998865
No 273
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.86 E-value=1.6e-05 Score=85.22 Aligned_cols=42 Identities=36% Similarity=0.529 Sum_probs=39.3
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
-.+|+|||+|++||+||..|-|.||-|+|+||.+++||....
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 368999999999999999999999999999999999999753
No 274
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.86 E-value=3.3e-05 Score=77.20 Aligned_cols=43 Identities=33% Similarity=0.519 Sum_probs=39.5
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
.++||+|||||..|.-||.-.+-+|.+|.++|+++...|....
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSk 108 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSK 108 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCcccc
Confidence 5699999999999999999999999999999999998887643
No 275
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.82 E-value=2.1e-05 Score=85.93 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=34.6
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGG 57 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG 57 (565)
...+|+|||||++||+||++|++.|++|+|+|+.+..|+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 456899999999999999999999999999999765444
No 276
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.80 E-value=2.3e-05 Score=78.99 Aligned_cols=37 Identities=38% Similarity=0.343 Sum_probs=33.7
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGG 57 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG 57 (565)
.||+|||||++|+.||+.|++.|++|+|+|+.+..+-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3799999999999999999999999999999876544
No 277
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.79 E-value=2.6e-05 Score=73.15 Aligned_cols=41 Identities=41% Similarity=0.631 Sum_probs=36.2
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC--CCCCee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH--VIGGAA 59 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~--~~GG~~ 59 (565)
..+||||||||++||.||..|+.+|++|+|+|+.. .+||-+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 46899999999999999999999999999998864 466654
No 278
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.78 E-value=2.5e-05 Score=81.45 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC--cEEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG--TRVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G--~~~~ad~VI~a~~~~~ 329 (565)
...+.+.+.+.+++.|++|+++++|++|..++ +.+. +.. +| +++.+|.||++++...
T Consensus 210 d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~~v~-~~~-~g~~~~i~~D~vivA~G~~p 268 (458)
T PRK06912 210 DEDIAHILREKLENDGVKIFTGAALKGLNSYK-KQAL-FEY-EGSIQEVNAEFVLVSVGRKP 268 (458)
T ss_pred cHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-CEEE-EEE-CCceEEEEeCEEEEecCCcc
Confidence 35678888889999999999999999998665 4433 433 34 3689999999988665
No 279
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.76 E-value=3.4e-05 Score=80.77 Aligned_cols=42 Identities=38% Similarity=0.533 Sum_probs=39.1
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
..+|+|||||++||+||..|++.|++|+|+|+.+++||.+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~ 184 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY 184 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec
Confidence 368999999999999999999999999999999999998753
No 280
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.75 E-value=2.9e-05 Score=71.27 Aligned_cols=32 Identities=47% Similarity=0.728 Sum_probs=30.2
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
||+|||||++||+||..|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998864
No 281
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.72 E-value=3.7e-05 Score=80.84 Aligned_cols=43 Identities=40% Similarity=0.546 Sum_probs=39.1
Q ss_pred cCCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCee
Q 038727 17 KDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAA 59 (565)
Q Consensus 17 ~~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~ 59 (565)
...++||||||||.+||.||..++.+|.+|+|+||....+|.+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t 45 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT 45 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence 4467999999999999999999999999999999998888664
No 282
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.70 E-value=0.00048 Score=69.71 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..+.+.+.+.++++|++++++++|++|. + + .|.+.+|+++.+|.||++++...
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~-~---~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D-G---ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C-C---eEEeCCCCEEecCEEEEccCCCh
Confidence 3466777888999999999999999984 3 3 37778888999999999888544
No 283
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.70 E-value=5.7e-05 Score=57.63 Aligned_cols=35 Identities=37% Similarity=0.498 Sum_probs=32.7
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
+|+|||||..|+-+|..|++.|.+|+|+|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 48999999999999999999999999999998755
No 284
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.69 E-value=6.2e-05 Score=75.68 Aligned_cols=43 Identities=35% Similarity=0.453 Sum_probs=39.3
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t 61 (565)
...+|+|||||++||++|..|++.|++|+|+|+.+.+||....
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF 59 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence 3468999999999999999999999999999999999998743
No 285
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.65 E-value=5.9e-05 Score=80.80 Aligned_cols=42 Identities=38% Similarity=0.480 Sum_probs=39.0
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
...+|+|||||++||++|..|++.|++|+|+|+.+.+||...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 346899999999999999999999999999999999999874
No 286
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.64 E-value=0.0002 Score=74.07 Aligned_cols=39 Identities=36% Similarity=0.503 Sum_probs=35.0
Q ss_pred cCCCCCEEEEcCChhHHHHHHHHHHC-CCcEEEEcccCCC
Q 038727 17 KDKKWDALVIGGGHNGLIAAAYLARG-GLSVAVLERRHVI 55 (565)
Q Consensus 17 ~~~~~dViIIGaGiaGL~aA~~La~~-G~~V~vlE~~~~~ 55 (565)
....||.||||||-+|+..|.+|++. -.+|+|||++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45789999999999999999999997 5899999998655
No 287
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.63 E-value=6.9e-05 Score=77.91 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..+.+.+.+. .+.|+++++++.|++|..++ +++. |++.+|+++.+|.||++++...
T Consensus 210 ~~~~~~l~~~-~~~gI~i~~~~~V~~i~~~~-~~v~-v~~~~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 210 EDISDRFTEI-AKKKWDIRLGRNVTAVEQDG-DGVT-LTLDDGSTVTADVLLVATGRVP 265 (452)
T ss_pred HHHHHHHHHH-HhcCCEEEeCCEEEEEEEcC-CeEE-EEEcCCCEEEcCEEEEeeccCc
Confidence 3455555543 35689999999999998766 5554 6777788899999999988665
No 288
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.0003 Score=69.45 Aligned_cols=40 Identities=43% Similarity=0.613 Sum_probs=34.0
Q ss_pred CCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEccc-CCCCC
Q 038727 18 DKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERR-HVIGG 57 (565)
Q Consensus 18 ~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~-~~~GG 57 (565)
+.+|||||||||.+|.-||+..+|.|.+.+++-.+ +.+|-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~ 66 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGE 66 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccc
Confidence 57899999999999999999999999998887665 44443
No 289
>PRK13984 putative oxidoreductase; Provisional
Probab=97.56 E-value=9.8e-05 Score=79.93 Aligned_cols=42 Identities=36% Similarity=0.469 Sum_probs=39.1
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~ 60 (565)
...+|+|||+|++||++|..|+++|++|+|||+.+.+||...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 456899999999999999999999999999999999999764
No 290
>PRK07846 mycothione reductase; Reviewed
Probab=97.54 E-value=8e-05 Score=77.35 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..+.+.+.+ +.+.|++++++++|++|..++ +++. |++.+|+++.+|.||++++...
T Consensus 207 ~~~~~~l~~-l~~~~v~i~~~~~v~~i~~~~-~~v~-v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 207 DDISERFTE-LASKRWDVRLGRNVVGVSQDG-SGVT-LRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred HHHHHHHHH-HHhcCeEEEeCCEEEEEEEcC-CEEE-EEECCCcEeecCEEEEEECCcc
Confidence 345555554 345689999999999998766 5544 7777888899999999988665
No 291
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.53 E-value=7.9e-05 Score=82.45 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=31.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHC--CCcEEEEcccCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARG--GLSVAVLERRHV 54 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~--G~~V~vlE~~~~ 54 (565)
++|+|||||++||++|..|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 3799999999999999999998 899999999876
No 292
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.48 E-value=0.00023 Score=67.40 Aligned_cols=50 Identities=38% Similarity=0.545 Sum_probs=44.9
Q ss_pred CCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCeeeecccCCC
Q 038727 18 DKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAAVTEELIPG 67 (565)
Q Consensus 18 ~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~G 67 (565)
.+.+|..|||||-+|+++|.+.+..|.+|.|+|..-.+||.|-...+.|.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPK 67 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPK 67 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccc
Confidence 35899999999999999999999999999999999899999977665554
No 293
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00016 Score=69.32 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=38.8
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHC--CCcEEEEcccCCCCCeeee
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARG--GLSVAVLERRHVIGGAAVT 61 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~--G~~V~vlE~~~~~GG~~~t 61 (565)
.++.|+|||+|++|+.+|..|.++ +..|.|+|+.+.|+|..+.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 456899999999999999999985 6899999999999999864
No 294
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.31 E-value=5.7e-05 Score=66.23 Aligned_cols=41 Identities=37% Similarity=0.575 Sum_probs=36.7
Q ss_pred CCCEEEEcCChhHHHHHHHHHHC--CCcEEEEcccCCCCCeee
Q 038727 20 KWDALVIGGGHNGLIAAAYLARG--GLSVAVLERRHVIGGAAV 60 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~--G~~V~vlE~~~~~GG~~~ 60 (565)
.-||+|||+|-+||+|||..+++ ..+|.|+|++-.|||-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 45999999999999999999965 689999999999998764
No 295
>PLN02785 Protein HOTHEAD
Probab=97.24 E-value=0.00036 Score=74.46 Aligned_cols=35 Identities=43% Similarity=0.643 Sum_probs=32.3
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~ 54 (565)
.+||+||||||.+|+.+|.+|++ +.+|+|||++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 56999999999999999999999 699999999763
No 296
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.15 E-value=0.0014 Score=65.07 Aligned_cols=34 Identities=41% Similarity=0.468 Sum_probs=26.9
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCC-CcEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGG-LSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G-~~V~vlE~~~ 53 (565)
.+|+|+||.|+++|+.|..|...+ .+++.||+.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 489999999999999999999986 8999999976
No 297
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.10 E-value=0.0018 Score=64.68 Aligned_cols=68 Identities=26% Similarity=0.341 Sum_probs=57.4
Q ss_pred ccCCc---hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 265 HVEGG---MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 265 ~~~gG---~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
.+.+| ...++..|++.+.++|++++.+++|++|..++ +++.+|.+.+| ++.||.||+|++++. ..|.+
T Consensus 128 ~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~g-~~~a~~vV~a~G~~~--~~l~~ 198 (337)
T TIGR02352 128 YPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPSG-DVQADQVVLAAGAWA--GELLP 198 (337)
T ss_pred cCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCCC-EEECCEEEEcCChhh--hhccc
Confidence 44444 47889999999999999999999999999887 88888888888 699999999999987 35543
No 298
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0011 Score=62.80 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=46.9
Q ss_pred cCCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCC---Cc--EEecCEEEECCChHHHH
Q 038727 266 VEGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVD---GT--RVHSSFVLSNATPYKTF 331 (565)
Q Consensus 266 ~~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~---G~--~~~ad~VI~a~~~~~~~ 331 (565)
.+|=.+.+++.+.+.++++|+++.-.+..++|+.-++++. .|...+ ++ +-.+|.|+++++-....
T Consensus 233 LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 233 LRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred cccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccch
Confidence 4666788999999999999999998888888876552552 244332 22 35678899988866543
No 299
>PRK14727 putative mercuric reductase; Provisional
Probab=96.72 E-value=0.016 Score=60.93 Aligned_cols=32 Identities=31% Similarity=0.245 Sum_probs=29.8
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 47999999999999999999999999999864
No 300
>PRK13748 putative mercuric reductase; Provisional
Probab=96.72 E-value=0.015 Score=62.64 Aligned_cols=32 Identities=34% Similarity=0.305 Sum_probs=30.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.+|+|||||..|+-.|..|++.|.+|+|++++
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 47999999999999999999999999999974
No 301
>PRK14694 putative mercuric reductase; Provisional
Probab=96.71 E-value=0.018 Score=60.30 Aligned_cols=32 Identities=41% Similarity=0.360 Sum_probs=29.8
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 47999999999999999999999999999863
No 302
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.003 Score=63.48 Aligned_cols=40 Identities=28% Similarity=0.479 Sum_probs=33.8
Q ss_pred CCCEEEEcCChhHHHHHHHHHHC--C-CcEEEEcccCCCCCee
Q 038727 20 KWDALVIGGGHNGLIAAAYLARG--G-LSVAVLERRHVIGGAA 59 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~--G-~~V~vlE~~~~~GG~~ 59 (565)
+++|+|||+|++|+++|.+|.+. . ..|.|+|.....|+-+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 36899999999999999999986 1 2399999999988443
No 303
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0065 Score=54.21 Aligned_cols=44 Identities=30% Similarity=0.395 Sum_probs=36.0
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcc----cCCCCCeeeec
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLER----RHVIGGAAVTE 62 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~----~~~~GG~~~t~ 62 (565)
.+.+|+|||+|+++-+||.+++++-.+-++||- +.-+||-..+.
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT 54 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT 54 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence 445899999999999999999999999999996 23346665443
No 304
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.35 E-value=0.0037 Score=64.38 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=37.6
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCee
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAA 59 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~ 59 (565)
..+++|||+|..||.+|..|+++|++|+++|+.+++||..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 3689999999999999999999999999999999988875
No 305
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.0038 Score=59.07 Aligned_cols=36 Identities=39% Similarity=0.432 Sum_probs=32.5
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.-|.|||||++|.-|||+++++|..|.++|-.+.-+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 459999999999999999999999999999986533
No 306
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.21 E-value=0.0052 Score=53.70 Aligned_cols=32 Identities=38% Similarity=0.478 Sum_probs=30.2
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||||-.|.+.|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999864
No 307
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.20 E-value=0.038 Score=55.22 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=70.4
Q ss_pred HHHHHHhccHHHHHHcccCChHHHHHHHHHHHhccCCCCCCChhHHHHHHHHhccccCCCccccccCCchHHHHHHHHHH
Q 038727 201 DFMDILLSPTTKILNKWFESDVLKATVAADAITGSMASIHAPGSGYVLLHHVMGETDGDRNLWSHVEGGMGSVSLAISKA 280 (565)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gG~~~l~~~l~~~ 280 (565)
+|.++...+..+++.+..-++....-+........+.. ......++-.+.......|.| -++||..++++.|
T Consensus 63 ~~~~~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ----~~~i~a~~G~vSla~a~~gl~-sV~GGN~qI~~~l--- 134 (368)
T PF07156_consen 63 DFLNLTKVTGEEYLKENGISERFINELVQAATRVNYGQ----NVNIHAFAGLVSLAGATGGLW-SVEGGNWQIFEGL--- 134 (368)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHhheEeeccc----ccchhhhhhheeeeeccCCce-EecCCHHHHHHHH---
Confidence 45556667778888776555554443332221111111 112223333333333456788 8999999999999
Q ss_pred HHHcCcEEEeCcceeEEE-ecCCCc-eeEEEeCC--Cc-EEecCEEEECCChHH
Q 038727 281 ATKAGAHILVNTEVSQIM-IGDSGE-VDGVLLVD--GT-RVHSSFVLSNATPYK 329 (565)
Q Consensus 281 l~~~G~~i~~~~~V~~I~-~~~~~~-v~~V~~~~--G~-~~~ad~VI~a~~~~~ 329 (565)
++..|.++ ++++|++|. ..+++. ...|...+ +. .-.+|.||+|+|...
T Consensus 135 l~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 135 LEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred HHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 55678899 899999993 333132 11244433 22 345799999998754
No 308
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.91 E-value=0.0092 Score=53.36 Aligned_cols=32 Identities=38% Similarity=0.524 Sum_probs=28.2
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999964
No 309
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.80 E-value=0.01 Score=58.06 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=31.1
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHC----CCcEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARG----GLSVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~----G~~V~vlE~~~ 53 (565)
.++||+|||||+.|++.|..|... .++|+++|...
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 479999999999999999999864 57999999974
No 310
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.78 E-value=0.026 Score=59.91 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeC---CCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLV---DGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~---~G~--~~~ad~VI~a~~~~~ 329 (565)
...++.++++.+.++|++|+++++|++|..++ +++.+|++. +|+ ++.|+.||.|+++|.
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 35788899999999999999999999999888 888777763 342 689999999999997
No 311
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.62 E-value=0.05 Score=54.47 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=49.5
Q ss_pred cc-CCchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC-cEEecCEEEECCChHH
Q 038727 265 HV-EGGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG-TRVHSSFVLSNATPYK 329 (565)
Q Consensus 265 ~~-~gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G-~~~~ad~VI~a~~~~~ 329 (565)
|| ..-..++.++|...+++.|++|+++++|++| ++ ++ ..|.+.++ ..++||.||+|++...
T Consensus 79 fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~-~~-~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 79 FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG-GT-LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC-Cc-EEEEECCCceEEecCEEEEcCCCcc
Confidence 77 4567889999999999999999999999999 43 44 34776543 4699999999998755
No 312
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.49 E-value=0.015 Score=52.23 Aligned_cols=33 Identities=36% Similarity=0.313 Sum_probs=26.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
++|.|||.|..||.+|..|+++|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 369999999999999999999999999999975
No 313
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.47 E-value=0.015 Score=60.82 Aligned_cols=34 Identities=38% Similarity=0.438 Sum_probs=31.6
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
+|.|||.|.+|+++|..|+++|++|+++|++..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999998754
No 314
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.39 E-value=0.14 Score=50.61 Aligned_cols=37 Identities=32% Similarity=0.309 Sum_probs=32.8
Q ss_pred cCCCCCEEEEcCChhHHHHHHHHHHCC-CcEEEEcccC
Q 038727 17 KDKKWDALVIGGGHNGLIAAAYLARGG-LSVAVLERRH 53 (565)
Q Consensus 17 ~~~~~dViIIGaGiaGL~aA~~La~~G-~~V~vlE~~~ 53 (565)
.++.+|+|.||-|+.-|+.|+.|...+ .+++.|||.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 346689999999999999999999975 7899999976
No 315
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.36 E-value=0.018 Score=55.71 Aligned_cols=33 Identities=33% Similarity=0.400 Sum_probs=31.0
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 379999999999999999999999999999875
No 316
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.34 E-value=0.018 Score=58.86 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=34.5
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCe
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGA 58 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~ 58 (565)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~ 182 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR 182 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence 47999999999999999999999999999998876554
No 317
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.27 E-value=0.016 Score=54.18 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCCC
Q 038727 272 SVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPRD 338 (565)
Q Consensus 272 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~~ 338 (565)
.+..-|.+.+.++|+++. ..+|+++.. + .+ -.+|.||.|++.+. .+|.+++
T Consensus 152 ~ylpyl~k~l~e~Gvef~-~r~v~~l~E--------~--~~---~~~DVivNCtGL~a--~~L~gDd 202 (342)
T KOG3923|consen 152 KYLPYLKKRLTENGVEFV-QRRVESLEE--------V--AR---PEYDVIVNCTGLGA--GKLAGDD 202 (342)
T ss_pred hhhHHHHHHHHhcCcEEE-EeeeccHHH--------h--cc---CCCcEEEECCcccc--ccccCCc
Confidence 446677888899999985 566666521 1 11 35899999999887 6787764
No 318
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.14 E-value=0.027 Score=55.11 Aligned_cols=33 Identities=24% Similarity=0.130 Sum_probs=30.8
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||+|..|...|..++.+|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999865
No 319
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.08 E-value=0.026 Score=59.46 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=30.8
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999865
No 320
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.01 E-value=0.029 Score=58.25 Aligned_cols=35 Identities=34% Similarity=0.410 Sum_probs=32.4
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
.+|+|||+|..|+.+|..|++.|.+|+|+|+.+++
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 47999999999999999999999999999998754
No 321
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.93 E-value=0.029 Score=58.92 Aligned_cols=34 Identities=35% Similarity=0.451 Sum_probs=31.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~ 54 (565)
.+|+|||||..|+-+|..|++.|.+|+|+|++++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 5799999999999999999999999999999764
No 322
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.90 E-value=0.027 Score=55.37 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=30.5
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||+|..|.+.|..|+++|++|++++++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999875
No 323
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.017 Score=55.12 Aligned_cols=31 Identities=42% Similarity=0.778 Sum_probs=27.4
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEE
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVL 49 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vl 49 (565)
..|||+|||||++|-+||.+.+|+|.+.-|+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ 240 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence 4599999999999999999999999876443
No 324
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.66 E-value=0.039 Score=56.11 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=33.0
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l 177 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL 177 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc
Confidence 579999999999999999999999999999987653
No 325
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.63 E-value=0.041 Score=57.64 Aligned_cols=36 Identities=33% Similarity=0.357 Sum_probs=33.3
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+.+|..|++.|.+|+|+|+.+.+.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 206 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL 206 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence 579999999999999999999999999999987653
No 326
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.62 E-value=0.047 Score=53.82 Aligned_cols=34 Identities=35% Similarity=0.378 Sum_probs=31.0
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
..+|+|||+|.-|.+.|..|+++|++|+++.+++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3579999999999999999999999999998853
No 327
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.61 E-value=0.046 Score=51.73 Aligned_cols=48 Identities=33% Similarity=0.444 Sum_probs=37.1
Q ss_pred cccCccccccccC----CCCCEEEEcCChhHHHHHHHHHHC-C-CcEEEEcccC
Q 038727 6 FSNGVSLTRTLKD----KKWDALVIGGGHNGLIAAAYLARG-G-LSVAVLERRH 53 (565)
Q Consensus 6 ~~~~~~~~~~~~~----~~~dViIIGaGiaGL~aA~~La~~-G-~~V~vlE~~~ 53 (565)
.+..|.+..++.. ++++|+|||||-+|++.|..+.++ | -+|.|+|-.+
T Consensus 21 ~~~~~~~~~t~~~~~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 21 SQTGPFQLATMLARFARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccccEeehhhhhhhcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 3345555555433 689999999999999999999987 5 4799998765
No 328
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.58 E-value=0.044 Score=47.49 Aligned_cols=31 Identities=39% Similarity=0.574 Sum_probs=28.8
Q ss_pred EEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 23 ALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 23 ViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
|+|||+|..|+..|++|+++|++|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998853
No 329
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=94.51 E-value=0.044 Score=57.40 Aligned_cols=36 Identities=36% Similarity=0.422 Sum_probs=33.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 202 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL 202 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence 579999999999999999999999999999987653
No 330
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.43 E-value=0.046 Score=50.81 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=31.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
++++|||+|--|.+.|..|++.|++|+++|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 369999999999999999999999999999976
No 331
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=94.43 E-value=0.05 Score=55.98 Aligned_cols=36 Identities=36% Similarity=0.419 Sum_probs=33.0
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+++|||||..|+=.|..+++.|.+|+|+|+.+++-
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL 209 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL 209 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 359999999999999999999999999999988643
No 332
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.39 E-value=0.049 Score=56.71 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=33.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 579999999999999999999999999999987654
No 333
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.35 E-value=0.12 Score=39.15 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCC
Q 038727 268 GGMGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDG 313 (565)
Q Consensus 268 gG~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G 313 (565)
.-...+.+.+.+.+++.|+++++++.|++|..++ +++. |+++||
T Consensus 37 ~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~~~-V~~~~g 80 (80)
T PF00070_consen 37 GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDG-DGVE-VTLEDG 80 (80)
T ss_dssp TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TSEE-EEEETS
T ss_pred hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CEEE-EEEecC
Confidence 3445778888899999999999999999999887 6666 888886
No 334
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.32 E-value=0.052 Score=56.88 Aligned_cols=36 Identities=33% Similarity=0.331 Sum_probs=33.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il 210 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 479999999999999999999999999999987643
No 335
>PRK07846 mycothione reductase; Reviewed
Probab=94.27 E-value=0.053 Score=56.45 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=33.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 579999999999999999999999999999987653
No 336
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.27 E-value=0.055 Score=56.53 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=32.6
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
.+++|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 47999999999999999999999999999998764
No 337
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.26 E-value=0.045 Score=53.21 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=30.3
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||+|..|...|..|+++|++|++++.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 59999999999999999999999999999875
No 338
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.21 E-value=0.049 Score=52.93 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=30.6
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||+|..|.+.|..|+++|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 339
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.16 E-value=0.058 Score=56.45 Aligned_cols=34 Identities=32% Similarity=0.323 Sum_probs=31.6
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~ 54 (565)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.++
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 5799999999999999999999999999998764
No 340
>PRK06370 mercuric reductase; Validated
Probab=94.12 E-value=0.062 Score=56.28 Aligned_cols=36 Identities=36% Similarity=0.414 Sum_probs=32.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 207 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL 207 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence 579999999999999999999999999999987643
No 341
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.05 E-value=0.062 Score=56.29 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=33.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 208 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL 208 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC
Confidence 479999999999999999999999999999987653
No 342
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.04 E-value=0.062 Score=56.33 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=32.3
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 47999999999999999999999999999987654
No 343
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.04 E-value=0.19 Score=53.88 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
...+.+.|.+.+++.|++|+.++.|+++..++ |+++||.. .+|+ .+.|+.||++++...
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED-GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 35789999999999999999999999999887 99999876 2454 578999999998765
No 344
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.02 E-value=0.069 Score=55.90 Aligned_cols=36 Identities=42% Similarity=0.468 Sum_probs=33.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 205 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL 205 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence 579999999999999999999999999999987654
No 345
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.00 E-value=0.074 Score=51.88 Aligned_cols=33 Identities=27% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||+|..|...|..|+++|++|+++++++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 346
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.99 E-value=0.06 Score=55.87 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=33.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 479999999999999999999999999999987654
No 347
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.97 E-value=0.074 Score=47.00 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=29.8
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
...+|+|+|+|..|+.||..|...|.+|+++|.+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 45789999999999999999999999999999853
No 348
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.89 E-value=0.069 Score=55.31 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=32.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 47999999999999999999999999999987654
No 349
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.89 E-value=0.069 Score=55.92 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=33.3
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 579999999999999999999999999999987654
No 350
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.75 E-value=0.041 Score=50.59 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=28.1
Q ss_pred CEEEEcCChhHHHHHHHHHHC--CCcEEEEcccCC
Q 038727 22 DALVIGGGHNGLIAAAYLARG--GLSVAVLERRHV 54 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~--G~~V~vlE~~~~ 54 (565)
+.+||||||+|.+||-.|+.. ..+|+++-+++.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 468999999999999999986 568998887654
No 351
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.74 E-value=0.084 Score=55.10 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=31.5
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
..+|+|||+|..|+.+|..|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999864
No 352
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=93.73 E-value=0.17 Score=50.97 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCC
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVP 336 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~ 336 (565)
..+.+.+.+.++++|+++++++.+.++.-+.+|+++.|.+.+|+++.||.||+.++.... ..++.
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~-t~~~~ 319 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN-TSFLE 319 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc-ccccc
Confidence 357788888899999999999999999876548999999999999999999998887763 44443
No 353
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=93.72 E-value=0.077 Score=55.72 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=33.0
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 219 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL 219 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC
Confidence 479999999999999999999999999999987653
No 354
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=93.66 E-value=0.083 Score=55.04 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=33.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+++|||+|..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll 205 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL 205 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc
Confidence 579999999999999999999999999999987653
No 355
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.65 E-value=0.091 Score=51.50 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=30.6
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.++|+|||+|--|...|++|+++|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 357999999999999999999999999999985
No 356
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.48 E-value=0.076 Score=51.76 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=30.6
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 359999999999999999999999999999864
No 357
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.46 E-value=0.09 Score=52.58 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=30.0
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.+|.|||+|..|...|..|+++|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 46999999999999999999999999999975
No 358
>PRK04148 hypothetical protein; Provisional
Probab=93.39 E-value=0.08 Score=44.15 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=30.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~ 54 (565)
.++++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999889999999999999998764
No 359
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.27 E-value=0.095 Score=51.58 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
++|.|||+|-.||++|.-|++.||+|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 360
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.20 E-value=0.1 Score=51.26 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=29.4
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
+|+|||+|-.|...|..|+++|++|+++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5999999999999999999999999999984
No 361
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.12 E-value=0.095 Score=50.81 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=30.1
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||+|..|.+.|..|+++|++|+++|.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 69999999999999999999999999999864
No 362
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.11 E-value=0.091 Score=49.70 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=31.6
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
..-+|+|||+|+.|.-+|..+.-.|.+|+|+|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 3468999999999999999999999999999997
No 363
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.10 E-value=0.11 Score=50.81 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=30.2
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999864
No 364
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.07 E-value=0.1 Score=58.29 Aligned_cols=36 Identities=39% Similarity=0.417 Sum_probs=33.0
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++-
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence 479999999999999999999999999999987653
No 365
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.05 E-value=0.11 Score=50.92 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=28.7
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcc
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLER 51 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~ 51 (565)
+|+|||+|..|...|..|+++|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999987
No 366
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=93.01 E-value=0.12 Score=56.13 Aligned_cols=36 Identities=19% Similarity=0.053 Sum_probs=33.0
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 479999999999999999999999999999987643
No 367
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=92.99 E-value=0.12 Score=53.85 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=32.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 46999999999999999999999999999997754
No 368
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.99 E-value=0.11 Score=53.34 Aligned_cols=33 Identities=30% Similarity=0.188 Sum_probs=30.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||.|..|+..|..|+++|++|++++.++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 469999999999999999999999999999865
No 369
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.95 E-value=0.12 Score=53.96 Aligned_cols=34 Identities=18% Similarity=-0.007 Sum_probs=31.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~ 54 (565)
.+|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 4699999999999999999999999999997643
No 370
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.95 E-value=0.13 Score=53.84 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=33.3
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGG 57 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG 57 (565)
.+++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~ 214 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP 214 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC
Confidence 4799999999999999999999999999999876543
No 371
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.92 E-value=0.14 Score=50.37 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=31.4
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
..+|.|||+|..|.+.|..|+++|++|+++.++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999999999999999999999999999864
No 372
>PTZ00058 glutathione reductase; Provisional
Probab=92.91 E-value=0.12 Score=55.14 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=31.6
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~ 54 (565)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 5799999999999999999999999999999764
No 373
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.86 E-value=0.15 Score=44.73 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=30.1
Q ss_pred CCCCEEEEcCCh-hHHHHHHHHHHCCCcEEEEccc
Q 038727 19 KKWDALVIGGGH-NGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 19 ~~~dViIIGaGi-aGL~aA~~La~~G~~V~vlE~~ 52 (565)
...+|+|||+|- .|..+|..|.+.|.+|+|..+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 346899999995 7999999999999999999875
No 374
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.85 E-value=0.13 Score=50.60 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=30.4
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||+|..|.+.|..|++.|++|++++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999764
No 375
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.84 E-value=0.11 Score=55.03 Aligned_cols=33 Identities=45% Similarity=0.447 Sum_probs=30.4
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 479999999999999999999999999998654
No 376
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.82 E-value=0.13 Score=53.60 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=32.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
.+|+|||||..|+-+|..|++.|.+|+++|+.+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 57999999999999999999999999999987754
No 377
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.81 E-value=0.13 Score=50.42 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=29.5
Q ss_pred CEEEEcCChhHHHHHHHHHHCC--CcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGG--LSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G--~~V~vlE~~~ 53 (565)
+|.|||+|..|.++|+.|+..| .+|+++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 6999999999999999999999 5899999864
No 378
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.70 E-value=0.15 Score=49.78 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=29.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCC-cEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGL-SVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~ 53 (565)
.+|.|||+|..|+.+|+.|+..|+ +|+++|..+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999887 899999843
No 379
>PLN02507 glutathione reductase
Probab=92.58 E-value=0.14 Score=53.94 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=32.3
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 47999999999999999999999999999997753
No 380
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.58 E-value=0.44 Score=51.16 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHcCcEEEeCcceeEEEec-CCCceeEEEe---CCCc--EEecCEEEECCChHH
Q 038727 270 MGSVSLAISKAATKAGAHILVNTEVSQIMIG-DSGEVDGVLL---VDGT--RVHSSFVLSNATPYK 329 (565)
Q Consensus 270 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~-~~~~v~~V~~---~~G~--~~~ad~VI~a~~~~~ 329 (565)
...|.+.|.+.+.+.|++|+.++.++++..+ + |+|+||.. .+|+ .+.|+.||++++...
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 4578999999898899999999999999985 5 89999876 3565 578999999998766
No 381
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.57 E-value=0.16 Score=51.84 Aligned_cols=36 Identities=36% Similarity=0.474 Sum_probs=33.2
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
..+|+|+|-|.+|++||..|.+.|.+|++.|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 567999999999999999999999999999987655
No 382
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.54 E-value=0.13 Score=57.53 Aligned_cols=36 Identities=33% Similarity=0.381 Sum_probs=32.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+++|||||..|+-+|..|++.|.+|+|+|..+++-
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 469999999999999999999999999999987643
No 383
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.46 E-value=0.16 Score=44.53 Aligned_cols=33 Identities=33% Similarity=0.400 Sum_probs=28.7
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||-|..|...|..|.++|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 469999999999999999999999999999863
No 384
>PRK06116 glutathione reductase; Validated
Probab=92.46 E-value=0.15 Score=53.11 Aligned_cols=35 Identities=20% Similarity=0.146 Sum_probs=32.4
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 57999999999999999999999999999997754
No 385
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.41 E-value=0.18 Score=50.08 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=30.6
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||+|..|...|..|+++|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 369999999999999999999999999999853
No 386
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.39 E-value=0.16 Score=52.77 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=32.3
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
.+|+|||+|..|+-.|..|++.|.+|+|+|+++.+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 47999999999999999999999999999997654
No 387
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.21 E-value=0.14 Score=52.51 Aligned_cols=33 Identities=36% Similarity=0.308 Sum_probs=30.7
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~ 54 (565)
+|.|||.|..|+..|..|+++|++|++++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998753
No 388
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.20 E-value=0.16 Score=52.81 Aligned_cols=33 Identities=36% Similarity=0.444 Sum_probs=30.7
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999998864
No 389
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.17 E-value=0.22 Score=45.28 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.8
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCC-cEEEEccc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGL-SVAVLERR 52 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~ 52 (565)
+..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 44679999999999999999999998 59999886
No 390
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.09 E-value=0.15 Score=53.57 Aligned_cols=33 Identities=30% Similarity=0.307 Sum_probs=30.7
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 459999999999999999999999999999864
No 391
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.08 E-value=0.15 Score=54.53 Aligned_cols=35 Identities=34% Similarity=0.487 Sum_probs=32.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVI 55 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~ 55 (565)
.+|+|||||..|+-.|..|++.|.+|+++++.+.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 57999999999999999999999999999998753
No 392
>PRK10262 thioredoxin reductase; Provisional
Probab=92.08 E-value=0.17 Score=50.05 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=30.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 479999999999999999999999999999865
No 393
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.07 E-value=0.24 Score=45.31 Aligned_cols=33 Identities=30% Similarity=0.487 Sum_probs=30.3
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|+|||||-.|+..+..|.+.|.+|+|+..+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999997654
No 394
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.03 E-value=0.28 Score=41.49 Aligned_cols=34 Identities=35% Similarity=0.422 Sum_probs=30.5
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCc-EEEEccc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLS-VAVLERR 52 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~-V~vlE~~ 52 (565)
+..+|+|||+|-+|-++++.|++.|.+ |+|+-|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 446799999999999999999999987 9999875
No 395
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.88 E-value=0.18 Score=53.65 Aligned_cols=33 Identities=42% Similarity=0.372 Sum_probs=30.5
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|+|||||.+|+-+|..|+..+.+|+|+++.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 479999999999999999999999999998754
No 396
>PLN02546 glutathione reductase
Probab=91.81 E-value=0.19 Score=53.50 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=32.8
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+.+.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il 288 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL 288 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc
Confidence 479999999999999999999999999999987643
No 397
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.79 E-value=0.2 Score=52.64 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=30.7
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||+|..|...|..|+++|++|+++|++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 459999999999999999999999999999865
No 398
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=91.73 E-value=0.22 Score=49.45 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=30.1
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||+|..|...|..|++.|++|++++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999863
No 399
>PRK12831 putative oxidoreductase; Provisional
Probab=91.71 E-value=0.2 Score=52.36 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=30.4
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|+|||||..|+-+|..|++.|.+|+|+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 579999999999999999999999999998753
No 400
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.55 E-value=0.22 Score=49.42 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=29.8
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||+|-.|.+.|..|+++|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999998853
No 401
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=91.50 E-value=0.25 Score=44.50 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
....|.|||||..|.-.|-..+..|+.|.+++++.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 44679999999999999999999999999999974
No 402
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.47 E-value=0.22 Score=52.36 Aligned_cols=32 Identities=38% Similarity=0.411 Sum_probs=30.0
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||+|..|...|..|+++|++|+|+++++
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999998763
No 403
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.44 E-value=0.25 Score=49.70 Aligned_cols=35 Identities=31% Similarity=0.373 Sum_probs=31.4
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
...+|+|||+|..|+.+|..|.+.|.+|++++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34579999999999999999999999999999853
No 404
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.36 E-value=0.23 Score=49.91 Aligned_cols=33 Identities=27% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCc-EEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLS-VAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~-V~vlE~~~ 53 (565)
.+|+|||+|..|+-+|..|++.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 4699999999999999999999987 99998753
No 405
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.34 E-value=0.27 Score=51.72 Aligned_cols=32 Identities=38% Similarity=0.478 Sum_probs=29.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.+++|||||..|+-+|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 47999999999999999999999999999874
No 406
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=91.28 E-value=0.24 Score=51.98 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=30.8
Q ss_pred CCEEEEcCChhHHHHHHHHHHC---CCcEEEEcccCCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARG---GLSVAVLERRHVIG 56 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~---G~~V~vlE~~~~~G 56 (565)
.+|+|||||..|+-.|..++.. |.+|+|+|+.+++.
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 5799999999999999776654 99999999988754
No 407
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.18 E-value=0.16 Score=40.68 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=30.3
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
+..+|+|||+|-.|..-+..|.+.|.+|+|+-..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4467999999999999999999999999999775
No 408
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.09 E-value=0.35 Score=44.09 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.0
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
..+|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 357999999999999999999999999999764
No 409
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.98 E-value=0.26 Score=51.49 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 469999999999999999999999999999865
No 410
>PTZ00052 thioredoxin reductase; Provisional
Probab=90.95 E-value=0.3 Score=51.58 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=29.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 37999999999999999999999999999874
No 411
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.93 E-value=0.25 Score=47.67 Aligned_cols=32 Identities=31% Similarity=0.311 Sum_probs=30.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.+|.|||||..|-..|..++..|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46999999999999999999988999999997
No 412
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.91 E-value=0.31 Score=48.71 Aligned_cols=32 Identities=38% Similarity=0.534 Sum_probs=30.4
Q ss_pred CCEEEEcCChhHHHHHHHHHHCC-CcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGG-LSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G-~~V~vlE~~ 52 (565)
.+|+|||+|--|.++|+.|++.| .+|+|.+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 57999999999999999999999 899999997
No 413
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.83 E-value=0.27 Score=47.93 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=30.5
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|+|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 479999999999999999999999999999854
No 414
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.73 E-value=0.23 Score=54.74 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=30.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||||..|...|..++.+|++|+++|.++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999874
No 415
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=90.72 E-value=0.28 Score=47.37 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=29.6
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999998853
No 416
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=90.72 E-value=0.38 Score=45.50 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=39.8
Q ss_pred cccccccCccccccc--cCCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 2 WRRSFSNGVSLTRTL--KDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
|.|+...++.+.++. .+...+|-.||=|+.|-..+..|-+.||+|+|+++..
T Consensus 15 ~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~ 68 (327)
T KOG0409|consen 15 FSRRLVKASETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTK 68 (327)
T ss_pred hcccccccccccccccCCcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcH
Confidence 455555555543332 2246789999999999999999999999999999754
No 417
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.63 E-value=0.39 Score=50.54 Aligned_cols=32 Identities=31% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.+|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999999999999999999999999999965
No 418
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.58 E-value=0.3 Score=49.50 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=28.2
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 59999999999999988885 99999999865
No 419
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.43 E-value=0.27 Score=51.28 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=30.9
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
..+|+|||+|..||.|+..+...|.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4679999999999999999999999999999864
No 420
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.41 E-value=0.42 Score=41.56 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=29.0
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLE 50 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE 50 (565)
+..+|+|||||-.|+.-|..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 34569999999999999999999999999994
No 421
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.35 E-value=0.3 Score=50.68 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=29.5
Q ss_pred CCEEEEcCChhHHHHHHHHHHCC--CcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGG--LSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G--~~V~vlE~~~ 53 (565)
++|.|||+|-.||..|..|+++| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 46999999999999999999985 7899999765
No 422
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.34 E-value=0.41 Score=49.85 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=31.3
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~ 54 (565)
.+|+|+|.|-+|+++|..|++.|++|++.|....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4699999999999999999999999999998664
No 423
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.31 E-value=0.3 Score=53.73 Aligned_cols=33 Identities=24% Similarity=0.191 Sum_probs=30.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||||..|...|..++.+|++|+++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999874
No 424
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.20 E-value=0.38 Score=50.11 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=30.4
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
..|+|+|+|-+|+++|..|++.|++|++.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 459999999999999999999999999999764
No 425
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.17 E-value=0.37 Score=44.70 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=28.2
Q ss_pred CEEEEc-CChhHHHHHHHHHHCCCcEEEEccc
Q 038727 22 DALVIG-GGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 22 dViIIG-aGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
+|.||| +|..|.+.|..|+++|++|+++.++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 599997 7999999999999999999998764
No 426
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.14 E-value=0.32 Score=47.34 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=29.7
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998864
No 427
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.94 E-value=0.49 Score=38.66 Aligned_cols=31 Identities=35% Similarity=0.579 Sum_probs=28.1
Q ss_pred EEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 23 ALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 23 ViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
|+|+|.|-.|...+..|.+.+.+|+++|.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999878999999985
No 428
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.93 E-value=0.39 Score=46.94 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=29.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|+|+|.-|...|++|+++|.+|+++=+..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 369999999999999999999998888876654
No 429
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=89.79 E-value=0.32 Score=51.72 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 274 SLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 274 ~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
.+.|.+.+++.|.++++++.+++|.. . +++.+|+++||..+.||.||.+++...
T Consensus 190 g~lL~~~le~~Gi~~~l~~~t~ei~g-~-~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 190 GRLLRRKLEDLGIKVLLEKNTEEIVG-E-DKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred HHHHHHHHHhhcceeecccchhhhhc-C-cceeeEeecCCCcccceeEEEeccccc
Confidence 45677888999999999999999987 4 788899999999999999999888764
No 430
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.75 E-value=0.47 Score=46.72 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCC-cEEEEcccCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGL-SVAVLERRHV 54 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~~ 54 (565)
.+|+|||+|..|.+.|+.|+..|+ +|+++|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 589999999999999999999996 8999998764
No 431
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=89.67 E-value=0.32 Score=53.63 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=30.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||||..|...|..++.+|++|+++|.++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 469999999999999999999999999999874
No 432
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.47 E-value=0.55 Score=42.76 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=30.4
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
..|+|+|.|-.|..+|..|.+.|++|++.|.+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 469999999999999999999999999998753
No 433
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=0.32 Score=46.83 Aligned_cols=34 Identities=41% Similarity=0.370 Sum_probs=28.9
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
+-.||+|||||-+|.-||.-|+--=.-|++||=.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 3468999999999999999998766678888854
No 434
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.33 E-value=0.5 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=29.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCC-cEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGL-SVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~ 53 (565)
.+|+|||+|..|.+.|+.|+..|. +|.++|.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 479999999999999999999876 999999854
No 435
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=89.20 E-value=0.45 Score=49.71 Aligned_cols=33 Identities=39% Similarity=0.499 Sum_probs=29.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCC-cEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGL-SVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~ 53 (565)
.+|+|||+|..|+-+|..|++.|. +|+|+++.+
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999999999998 899998753
No 436
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.18 E-value=0.6 Score=45.89 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=30.9
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCC--cEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGL--SVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~--~V~vlE~~~ 53 (565)
...+|+|||+|-.|.++|+.|+..|. ++.++|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 34689999999999999999999987 799999854
No 437
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=89.10 E-value=0.45 Score=46.95 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHHHHhhcCCC
Q 038727 274 SLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYKTFMGLVPR 337 (565)
Q Consensus 274 ~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~~~~~l~~~ 337 (565)
.+.-.+.+++.|+.|+-|..|+++.... +.+. +.++||.+++.|+||++++-... ..|...
T Consensus 396 s~wt~ekir~~GV~V~pna~v~sv~~~~-~nl~-lkL~dG~~l~tD~vVvavG~ePN-~ela~~ 456 (659)
T KOG1346|consen 396 SQWTIEKIRKGGVDVRPNAKVESVRKCC-KNLV-LKLSDGSELRTDLVVVAVGEEPN-SELAEA 456 (659)
T ss_pred HHHHHHHHHhcCceeccchhhhhhhhhc-cceE-EEecCCCeeeeeeEEEEecCCCc-hhhccc
Confidence 4444566788899999999999998876 7766 89999999999999998886653 455544
No 438
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.03 E-value=0.76 Score=35.28 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=29.0
Q ss_pred CCCEEEEcCChhHHHHHHHHHHC-CCcEEEEcc
Q 038727 20 KWDALVIGGGHNGLIAAAYLARG-GLSVAVLER 51 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~-G~~V~vlE~ 51 (565)
..+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35799999999999999999998 678999988
No 439
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=89.02 E-value=0.49 Score=48.88 Aligned_cols=35 Identities=37% Similarity=0.422 Sum_probs=30.5
Q ss_pred CEEEEcCChhHHHHHHHHHH--------------CCCcEEEEcccCCCC
Q 038727 22 DALVIGGGHNGLIAAAYLAR--------------GGLSVAVLERRHVIG 56 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~--------------~G~~V~vlE~~~~~G 56 (565)
+|+|||||..|+-.|..|++ .+.+|+|+|+.+++.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll 223 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL 223 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc
Confidence 79999999999999999986 478999999987653
No 440
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.00 E-value=0.49 Score=46.39 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=29.5
Q ss_pred CEEEEcCChhHHHHHHHHHHCC--CcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGG--LSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G--~~V~vlE~~~ 53 (565)
+|+|||+|-.|.++|+.|+..| .+|++++++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999999 5899999865
No 441
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.95 E-value=0.59 Score=49.02 Aligned_cols=32 Identities=34% Similarity=0.353 Sum_probs=29.8
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.+|.|+|.|.+|+++|..|.+.|.+|++.|+.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 46999999999999999999999999999975
No 442
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=88.75 E-value=0.55 Score=44.92 Aligned_cols=33 Identities=33% Similarity=0.328 Sum_probs=31.1
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~ 54 (565)
+|.+||-|..|...|.+|.++|++|+|++++..
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence 699999999999999999999999999999754
No 443
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=88.64 E-value=0.42 Score=52.56 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=30.1
Q ss_pred CCEEEEcCChhHHHHHHHHH-HCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLA-RGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La-~~G~~V~vlE~~~ 53 (565)
.+|.|||||..|...|..++ ++|++|+++|.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 46999999999999999998 5899999999874
No 444
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=88.63 E-value=1.3 Score=45.73 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCcEEEeCcceeEEEecCCCceeEEEeCCCcEEecCEEEECCChHH
Q 038727 271 GSVSLAISKAATKAGAHILVNTEVSQIMIGDSGEVDGVLLVDGTRVHSSFVLSNATPYK 329 (565)
Q Consensus 271 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~v~~V~~~~G~~~~ad~VI~a~~~~~ 329 (565)
..+.+.+.+.+++.|+++++++.|++|..++ .+ +.+.+|+++.+|.||++++...
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~--~~--v~~~~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEGEE--RV--KVFTSGGVYQADMVILATGIKP 233 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEecCC--CE--EEEcCCCEEEeCEEEECCCccC
Confidence 3567778888999999999999999997543 32 4567788899999999887653
No 445
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=88.61 E-value=0.24 Score=48.34 Aligned_cols=39 Identities=36% Similarity=0.400 Sum_probs=36.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCCCCCee
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHVIGGAA 59 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~~GG~~ 59 (565)
.+.+|||||..||-.+..-.+.|-+|+++|..+.+||.+
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m 250 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM 250 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc
Confidence 479999999999999999999999999999999888774
No 446
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.61 E-value=0.64 Score=46.15 Aligned_cols=35 Identities=31% Similarity=0.571 Sum_probs=31.6
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCC-cEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGL-SVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~ 53 (565)
.+.+|+|||+|--|..+|..|+++|. +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45789999999999999999999998 899999853
No 447
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=88.55 E-value=0.64 Score=43.23 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=30.1
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCC---cEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGL---SVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~---~V~vlE~~~ 53 (565)
..+|+|+|+|-+|..+|..|.+.|. +|.|++++.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4579999999999999999999996 499999873
No 448
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.52 E-value=0.62 Score=45.32 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=31.5
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
..+|+|||.|..|..+|..|.+.|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4679999999999999999999999999998874
No 449
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.51 E-value=0.53 Score=47.80 Aligned_cols=34 Identities=32% Similarity=0.188 Sum_probs=31.0
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
...|+|+|+|.-|+.+|..|+..|.+|+|+|.++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 3479999999999999999999999999999865
No 450
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.51 E-value=0.5 Score=49.45 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=30.6
Q ss_pred CCEEEEcCChhHHH-HHHHHHHCCCcEEEEcccCC
Q 038727 21 WDALVIGGGHNGLI-AAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 21 ~dViIIGaGiaGL~-aA~~La~~G~~V~vlE~~~~ 54 (565)
.+|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 46999999999999 59999999999999998654
No 451
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.49 E-value=0.71 Score=43.89 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCC-CcEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGG-LSVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G-~~V~vlE~~~ 53 (565)
...+|+|||.|-.|..+|..|++.| .+++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4567999999999999999999999 6899999763
No 452
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.39 E-value=0.66 Score=44.84 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCC-cEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGL-SVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~ 53 (565)
.+|+|||+|-+|-++|+.|++.|. +|+|++++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 579999999999999999999997 799998863
No 453
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.37 E-value=0.42 Score=52.66 Aligned_cols=33 Identities=30% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCEEEEcCChhHHHHHHHHH-HCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLA-RGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La-~~G~~V~vlE~~~ 53 (565)
.+|.|||||..|...|..++ ++|++|+++|.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 46999999999999999999 8899999999864
No 454
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=88.32 E-value=0.76 Score=39.15 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=29.3
Q ss_pred CCEEEEcC-ChhHHHHHHHHHHCC--CcEEEEcccC
Q 038727 21 WDALVIGG-GHNGLIAAAYLARGG--LSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGa-GiaGL~aA~~La~~G--~~V~vlE~~~ 53 (565)
.+|.|||+ |.-|.+.|+.|...+ .++.++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 37999999 999999999999986 4799999974
No 455
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.31 E-value=0.49 Score=40.01 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=29.8
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCC-cEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGL-SVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~ 53 (565)
+.+|+|||+|--|...|..|++.|. +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4579999999999999999999997 689998853
No 456
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=88.26 E-value=0.55 Score=52.40 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=30.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCc-EEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLS-VAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~-V~vlE~~~ 53 (565)
.+|+|||||..|+-+|..|.+.|.+ |+|+++.+
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999987 99998753
No 457
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=88.22 E-value=0.55 Score=45.80 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=30.1
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||.|..|...|..|+++|++|++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999998864
No 458
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.10 E-value=0.62 Score=45.47 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=30.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 369999999999999999999999999998764
No 459
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.06 E-value=0.74 Score=46.53 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=30.9
Q ss_pred CCCEEEEc-CChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 20 KWDALVIG-GGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIG-aGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
..+|+||| .|..|-+.|..|+++|++|+++++++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 35799999 89999999999999999999999853
No 460
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.01 E-value=0.73 Score=45.72 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=31.4
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCC-cEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGL-SVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~ 53 (565)
.+.+|+|||+|--|..+|..|+++|. +++|+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45679999999999999999999997 799999864
No 461
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.85 E-value=0.55 Score=48.88 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=31.0
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
..+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999998864
No 462
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.75 E-value=0.64 Score=49.14 Aligned_cols=33 Identities=36% Similarity=0.484 Sum_probs=30.4
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||.|.+|+++|..|.+.|++|.+.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 469999999999999999999999999999764
No 463
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.65 E-value=0.88 Score=40.38 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=28.9
Q ss_pred CEEEEcCChhHHHHHHHHHHCCC-cEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGL-SVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~ 53 (565)
+|+|||+|-.|...|..|++.|. +++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999998 499998863
No 464
>PTZ00117 malate dehydrogenase; Provisional
Probab=87.64 E-value=0.78 Score=45.21 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=30.9
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCC-CcEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGG-LSVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G-~~V~vlE~~~ 53 (565)
++.+|+|||||..|.+.|+.|+..| .++.++|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 3468999999999999999999998 5899999864
No 465
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.63 E-value=0.61 Score=45.62 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=28.5
Q ss_pred EEEEcCChhHHHHHHHHHHCCC-cEEEEcccC
Q 038727 23 ALVIGGGHNGLIAAAYLARGGL-SVAVLERRH 53 (565)
Q Consensus 23 ViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~ 53 (565)
|.|||+|..|..+|+.|+..|. +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5899999999999999999877 999999974
No 466
>PLN00016 RNA-binding protein; Provisional
Probab=87.63 E-value=0.66 Score=47.14 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=32.2
Q ss_pred cCCCCCEEEE----cC-ChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 17 KDKKWDALVI----GG-GHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 17 ~~~~~dViII----Ga-GiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
..++.+|+|+ || |.-|...+..|.++|++|+++.++.
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 3355679999 75 9999999999999999999999875
No 467
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.60 E-value=0.61 Score=48.53 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=28.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.+|+|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 469999999999999999995 9999999954
No 468
>PLN02602 lactate dehydrogenase
Probab=87.53 E-value=0.95 Score=45.04 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=29.7
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCC--cEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGL--SVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~--~V~vlE~~~ 53 (565)
.+|+|||+|-.|.++|+.|+..|. ++.++|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999998875 699999854
No 469
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.39 E-value=0.87 Score=44.64 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=30.1
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCC--cEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGL--SVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~--~V~vlE~~~ 53 (565)
+.+|+|||+|..|.++|+.|+..|. ++.|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4689999999999999999999875 689999864
No 470
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=87.39 E-value=0.42 Score=48.14 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=29.0
Q ss_pred CCEEEEcCChhHHHHHHHHHHCC-------------CcEEEEcccCCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGG-------------LSVAVLERRHVI 55 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G-------------~~V~vlE~~~~~ 55 (565)
-.++|||||.+|.=.|..|++.- .+|+|+|+.+++
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 46999999999999999997641 288999998764
No 471
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.20 E-value=0.69 Score=48.21 Aligned_cols=32 Identities=38% Similarity=0.668 Sum_probs=29.9
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
-|+|||.|-+|+++|..|.+.|++|++.|...
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 49999999999999999999999999999765
No 472
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.13 E-value=0.68 Score=39.09 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=27.3
Q ss_pred EEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 23 ALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 23 ViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
++|+|+|.-+.+.|..++..|++|+|+|-.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999998874
No 473
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.10 E-value=0.76 Score=47.38 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=30.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||-|.+|+++|..|.++|++|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 369999999999999999999999999999754
No 474
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.04 E-value=0.79 Score=45.00 Aligned_cols=33 Identities=27% Similarity=0.231 Sum_probs=29.0
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCC--cEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGL--SVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~--~V~vlE~~~ 53 (565)
.+|+|||+|..|.+.|..|++.|. +|++++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 369999999999999999999985 788898753
No 475
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=86.88 E-value=0.7 Score=48.01 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccCC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRHV 54 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~~ 54 (565)
.+|.|||.|..|...|..|+++|++|++++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998643
No 476
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.65 E-value=0.82 Score=44.66 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=29.9
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||.|..|...|..|+++|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999998864
No 477
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.65 E-value=1.1 Score=41.14 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=30.4
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCc-EEEEccc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLS-VAVLERR 52 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~-V~vlE~~ 52 (565)
...+|+|||+|-.|..+|..|++.|.. ++|+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456799999999999999999999974 8988886
No 478
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=86.59 E-value=1 Score=40.74 Aligned_cols=33 Identities=42% Similarity=0.566 Sum_probs=29.5
Q ss_pred CCCEEEEcC-ChhHHHHHHHHHHCCCcEEEEccc
Q 038727 20 KWDALVIGG-GHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 20 ~~dViIIGa-GiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
..+++|+|| |..|..+|..|++.|.+|+++.++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999997 999999999999999999999764
No 479
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=86.51 E-value=1 Score=35.25 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=28.2
Q ss_pred CEEEEcCChhHHHHHHHHHHCC---CcEEEE-cccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGG---LSVAVL-ERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G---~~V~vl-E~~~ 53 (565)
+|.|||+|-.|.+.+..|.+.| .+|.+. ++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 4889999999999999999999 889865 7753
No 480
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.46 E-value=1.2 Score=40.71 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=30.7
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCC-cEEEEccc
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGL-SVAVLERR 52 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~ 52 (565)
.+.+|+|||.|-.|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 45689999999999999999999996 79998885
No 481
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=86.44 E-value=0.87 Score=44.06 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=30.7
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|+|||.|-.|.+.|..|+..|.+|++++++.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999999864
No 482
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.42 E-value=0.8 Score=47.90 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=29.7
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
.+|.|||.|-+|+++|..|.++|++|.+.|..
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 36999999999999999999999999999965
No 483
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.42 E-value=1.1 Score=45.25 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=33.3
Q ss_pred ccCCCCCEEEEcC-ChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 16 LKDKKWDALVIGG-GHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 16 ~~~~~~dViIIGa-GiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+.+...+|+|.|| |.-|...+..|.++|++|+++.+..
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 4456678999999 9999999999999999999998753
No 484
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=86.10 E-value=1.2 Score=38.54 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=29.8
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCC-CcEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGG-LSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G-~~V~vlE~~~ 53 (565)
..+++|||+|..|.+.|..|++.| .+|++++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 357999999999999999999996 7899998763
No 485
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.95 E-value=1.1 Score=46.58 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=30.5
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||-|-+|++++..|++.|++|++.|...
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 469999999999999999999999999999765
No 486
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.83 E-value=1.3 Score=37.83 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=29.1
Q ss_pred CEEEEcCChhHHHHHHHHHHCCC-cEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGL-SVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~ 53 (565)
+|+|||+|-.|...|..|++.|. +++|+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999997 699998864
No 487
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=85.79 E-value=1 Score=40.61 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=28.1
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLER 51 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~ 51 (565)
+.+.|+|+|--|.+.|.+|+++|++|+|-=+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~ 32 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSS 32 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecC
Confidence 4589999999999999999999999998744
No 488
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=85.77 E-value=1.1 Score=43.07 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
..+++|+|+|-.|.++|..|++.|.+|+|+.++
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 346999999999999999999999999999875
No 489
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.60 E-value=0.87 Score=47.55 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=30.3
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|+|||+|..|...|..|.+.|++|+++|+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 69999999999999999999999999999865
No 490
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=85.47 E-value=1.1 Score=44.60 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=28.8
Q ss_pred CEEEEcCChhHHHHHHHHHHCC--------CcEEEEccc
Q 038727 22 DALVIGGGHNGLIAAAYLARGG--------LSVAVLERR 52 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G--------~~V~vlE~~ 52 (565)
+|.|||+|--|.+.|..|++.| ++|+++.++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~ 39 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE 39 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec
Confidence 5899999999999999999999 999999774
No 491
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.34 E-value=1.1 Score=43.97 Aligned_cols=32 Identities=34% Similarity=0.341 Sum_probs=29.8
Q ss_pred CEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
+|.|||.|..|...|..|+++|++|++++++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 59999999999999999999999999998863
No 492
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=85.34 E-value=0.95 Score=50.98 Aligned_cols=33 Identities=30% Similarity=0.207 Sum_probs=30.3
Q ss_pred CCEEEEcCChhHHHH-HHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIA-AAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~a-A~~La~~G~~V~vlE~~~ 53 (565)
.+|.|||.|-+|+++ |..|.++|++|++.|.+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 359999999999999 999999999999999764
No 493
>PLN02256 arogenate dehydrogenase
Probab=85.30 E-value=1.2 Score=43.43 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
...+|.|||.|..|-+.|..|++.|++|.+++++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 44679999999999999999999999999998763
No 494
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=85.22 E-value=0.95 Score=47.16 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=30.9
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
..+|+|||+|.+|+=.|..|++.+.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 3579999999999999999999999999998864
No 495
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=85.11 E-value=1.4 Score=42.86 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=28.9
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCc-EEEEccc
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLS-VAVLERR 52 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~-V~vlE~~ 52 (565)
..++|+|||=+|.++|+.|++.|.+ |+|+.++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4699999999999999999999986 9999875
No 496
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=85.07 E-value=0.69 Score=38.45 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=28.3
Q ss_pred cCCCCCEEEEcCChhHHHHHHHHHHCCCcEEEEccc
Q 038727 17 KDKKWDALVIGGGHNGLIAAAYLARGGLSVAVLERR 52 (565)
Q Consensus 17 ~~~~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~ 52 (565)
+..+.+|.|||+|-.|-+.|..|.++|+.|.-+...
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 345689999999999999999999999998876553
No 497
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=85.05 E-value=1 Score=45.52 Aligned_cols=34 Identities=26% Similarity=0.095 Sum_probs=31.2
Q ss_pred CCCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 20 KWDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 20 ~~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
...|+|||.|.-|+.+|..|+..|.+|+|+|.++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3479999999999999999999999999999865
No 498
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.01 E-value=1.2 Score=43.42 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=28.5
Q ss_pred CEEEEcCChhHHHHHHHHHHCCC--cEEEEcccC
Q 038727 22 DALVIGGGHNGLIAAAYLARGGL--SVAVLERRH 53 (565)
Q Consensus 22 dViIIGaGiaGL~aA~~La~~G~--~V~vlE~~~ 53 (565)
+|+|||+|-.|.++|+.|...+. ++.++|.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999999875 699999853
No 499
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.82 E-value=1.4 Score=41.36 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=30.4
Q ss_pred CCCCEEEEcCChhHHHHHHHHHHCCC-cEEEEcccC
Q 038727 19 KKWDALVIGGGHNGLIAAAYLARGGL-SVAVLERRH 53 (565)
Q Consensus 19 ~~~dViIIGaGiaGL~aA~~La~~G~-~V~vlE~~~ 53 (565)
+..+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 45689999999999999999999995 688888753
No 500
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=84.70 E-value=1 Score=51.22 Aligned_cols=33 Identities=36% Similarity=0.497 Sum_probs=30.5
Q ss_pred CCEEEEcCChhHHHHHHHHHHCCCcEEEEcccC
Q 038727 21 WDALVIGGGHNGLIAAAYLARGGLSVAVLERRH 53 (565)
Q Consensus 21 ~dViIIGaGiaGL~aA~~La~~G~~V~vlE~~~ 53 (565)
.+|+|||||..|+-+|..+.+.|.+|+++.+.+
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 479999999999999999999999999998764
Done!