BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038733
         (519 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PLT|A Chain A, Crystal Structure Of Lsp1 From Saccharomyces Cerevisiae
 pdb|3PLT|B Chain B, Crystal Structure Of Lsp1 From Saccharomyces Cerevisiae
 pdb|3PLT|C Chain C, Crystal Structure Of Lsp1 From Saccharomyces Cerevisiae
          Length = 234

 Score = 36.6 bits (83), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 38/73 (52%)

Query: 63  GEIDDPDLGNIMDEINCFTYESEMVIDTFINSINEHKSQSSCSKDIYDALQGLQSRITKI 122
           G  +D D+ ++ D++    YE   + D FI+  ++++      ++I  ++Q  + R  KI
Sbjct: 57  GADNDDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKI 116

Query: 123 KQRVQQLKHIDPK 135
              +  LK+ DP+
Sbjct: 117 TDEIAHLKYKDPQ 129


>pdb|2W45|A Chain A, Epstein-Barr Virus Alkaline Nuclease
 pdb|2W45|B Chain B, Epstein-Barr Virus Alkaline Nuclease
          Length = 470

 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220
           ++ V +PDS+ + KT+ TA     +Y  + FD   W+PS
Sbjct: 423 VTPVVLPDSV-IRKTLSTAAGSWKAYADNTFDTAPWVPS 460


>pdb|2W4B|A Chain A, Epstein-Barr Virus Alkaline Nuclease D203s Mutant
 pdb|2W4B|B Chain B, Epstein-Barr Virus Alkaline Nuclease D203s Mutant
          Length = 470

 Score = 30.0 bits (66), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220
           ++ V +PDS+ + KT+ TA     +Y  + FD   W+PS
Sbjct: 423 VTPVVLPDSV-IRKTLSTAAGSWKAYADNTFDTAPWVPS 460


>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
           (Tcmip)
          Length = 167

 Score = 29.6 bits (65), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 462 THETRLEQQQGGRKRLRRVFADEEVMLPDAAKLP 495
           +HE R+      RKR+ R+F +++   PDA KLP
Sbjct: 6   SHEERMNNY---RKRVGRLFMEQKAAQPDAVKLP 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,862,879
Number of Sequences: 62578
Number of extensions: 611002
Number of successful extensions: 1168
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1164
Number of HSP's gapped (non-prelim): 10
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)