Query 038733
Match_columns 519
No_of_seqs 299 out of 2854
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-65 4.6E-70 569.8 29.5 488 1-518 1-605 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 5.5E-37 1.2E-41 306.7 13.9 209 164-374 1-284 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.1E-35 2.5E-40 346.8 16.2 246 154-425 179-506 (1153)
4 PRK04841 transcriptional regul 99.0 1.1E-08 2.5E-13 118.3 21.3 239 158-422 13-333 (903)
5 PRK00411 cdc6 cell division co 98.9 2.9E-07 6.3E-12 96.4 22.9 121 154-277 25-150 (394)
6 TIGR02928 orc1/cdc6 family rep 98.5 8.2E-07 1.8E-11 91.9 12.5 120 156-277 12-141 (365)
7 PRK00080 ruvB Holliday junctio 98.4 3E-06 6.6E-11 86.4 14.3 227 157-397 23-311 (328)
8 TIGR00635 ruvB Holliday juncti 98.4 3.3E-06 7.2E-11 85.2 13.5 225 159-397 4-290 (305)
9 cd01128 rho_factor Transcripti 98.4 5.8E-07 1.3E-11 87.5 6.9 95 182-277 16-115 (249)
10 PTZ00202 tuzin; Provisional 98.3 3.5E-05 7.5E-10 79.3 18.1 103 154-271 257-367 (550)
11 PRK09376 rho transcription ter 98.3 7.5E-07 1.6E-11 90.8 5.7 93 182-276 169-267 (416)
12 COG2909 MalT ATP-dependent tra 98.2 0.0001 2.2E-09 80.9 20.6 245 157-424 17-341 (894)
13 PF13191 AAA_16: AAA ATPase do 98.2 2.5E-06 5.5E-11 79.0 6.4 50 160-209 1-51 (185)
14 PF13401 AAA_22: AAA domain; P 98.2 2.2E-06 4.8E-11 74.8 5.5 91 182-277 4-99 (131)
15 TIGR03015 pepcterm_ATPase puta 98.2 2.4E-05 5.3E-10 77.2 13.3 88 182-278 43-136 (269)
16 TIGR00767 rho transcription te 98.1 1.4E-05 3.1E-10 81.9 8.9 94 182-276 168-266 (415)
17 cd00009 AAA The AAA+ (ATPases 98.0 2.8E-05 6.2E-10 68.2 9.6 57 162-222 1-57 (151)
18 PF01637 Arch_ATPase: Archaeal 97.9 1.6E-05 3.6E-10 76.1 6.0 43 161-205 1-43 (234)
19 COG1474 CDC6 Cdc6-related prot 97.8 0.00018 3.9E-09 74.1 11.1 114 157-277 15-135 (366)
20 PF05729 NACHT: NACHT domain 97.7 9.5E-05 2.1E-09 66.9 7.4 85 183-278 1-94 (166)
21 COG3903 Predicted ATPase [Gene 97.7 0.00011 2.5E-09 74.6 7.8 226 181-424 13-317 (414)
22 KOG2543 Origin recognition com 97.6 0.00028 6.1E-09 70.9 9.5 118 157-279 4-129 (438)
23 PTZ00112 origin recognition co 97.6 0.00047 1E-08 76.6 11.7 117 157-277 753-881 (1164)
24 PF13173 AAA_14: AAA domain 97.6 0.00012 2.5E-09 64.0 5.3 75 182-280 2-76 (128)
25 PRK13342 recombination factor 97.5 0.00019 4.1E-09 75.7 7.0 46 158-205 11-59 (413)
26 KOG2028 ATPase related to the 97.5 0.00043 9.3E-09 69.1 8.9 92 156-276 141-233 (554)
27 PRK11331 5-methylcytosine-spec 97.5 0.00033 7.2E-09 73.2 8.4 109 158-278 174-285 (459)
28 COG2256 MGS1 ATPase related to 97.4 0.00063 1.4E-08 69.1 8.7 100 155-287 26-136 (436)
29 PF05496 RuvB_N: Holliday junc 97.4 0.0016 3.4E-08 61.8 10.5 55 156-212 21-78 (233)
30 PRK08118 topology modulation p 97.3 0.00011 2.4E-09 67.4 2.5 35 183-217 2-37 (167)
31 PF04665 Pox_A32: Poxvirus A32 97.3 0.00046 9.9E-09 66.5 6.0 36 183-220 14-49 (241)
32 COG3899 Predicted ATPase [Gene 97.2 0.0053 1.1E-07 70.3 15.2 119 293-419 243-384 (849)
33 TIGR02903 spore_lon_C ATP-depe 97.2 0.0083 1.8E-07 66.3 15.2 117 158-277 153-304 (615)
34 KOG2227 Pre-initiation complex 97.1 0.0042 9.2E-08 64.3 11.5 129 154-287 145-292 (529)
35 PRK04195 replication factor C 97.1 0.0016 3.5E-08 70.0 8.7 48 158-205 13-62 (482)
36 PRK06893 DNA replication initi 97.1 0.0006 1.3E-08 65.9 4.8 37 182-220 39-75 (229)
37 smart00382 AAA ATPases associa 97.1 0.0025 5.4E-08 55.1 8.1 88 183-278 3-91 (148)
38 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.0014 3.1E-08 62.8 7.1 53 164-220 22-74 (226)
39 PRK13341 recombination factor 97.1 0.0012 2.6E-08 73.8 7.3 51 158-212 27-80 (725)
40 PF00004 AAA: ATPase family as 97.0 0.0013 2.8E-08 57.0 6.1 21 185-205 1-21 (132)
41 PF05621 TniB: Bacterial TniB 97.0 0.0067 1.5E-07 60.1 11.6 116 157-277 32-157 (302)
42 PRK08116 hypothetical protein; 97.0 0.0027 5.9E-08 62.8 8.5 78 183-280 115-195 (268)
43 PRK10536 hypothetical protein; 97.0 0.0077 1.7E-07 58.6 11.1 58 156-217 52-109 (262)
44 PRK07261 topology modulation p 96.9 0.0025 5.5E-08 58.6 7.2 35 184-218 2-37 (171)
45 PF12061 DUF3542: Protein of u 96.9 0.0024 5.2E-08 62.4 6.7 106 3-127 296-401 (402)
46 CHL00095 clpC Clp protease ATP 96.9 0.00096 2.1E-08 76.4 4.6 45 159-205 179-223 (821)
47 cd01393 recA_like RecA is a b 96.9 0.0098 2.1E-07 57.0 11.0 101 173-275 10-124 (226)
48 PRK12608 transcription termina 96.8 0.0031 6.7E-08 64.5 7.6 105 168-275 120-230 (380)
49 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0058 1.3E-07 59.0 9.3 96 180-275 17-125 (235)
50 TIGR01242 26Sp45 26S proteasom 96.8 0.001 2.2E-08 68.9 4.2 57 154-212 117-184 (364)
51 PRK09361 radB DNA repair and r 96.8 0.0058 1.3E-07 58.7 9.1 97 172-274 13-116 (225)
52 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0015 3.1E-08 66.6 4.7 50 156-205 48-101 (361)
53 PRK05564 DNA polymerase III su 96.8 0.0088 1.9E-07 60.6 10.5 77 159-236 4-85 (313)
54 TIGR02237 recomb_radB DNA repa 96.8 0.0056 1.2E-07 58.0 8.5 92 180-274 10-106 (209)
55 PRK08727 hypothetical protein; 96.8 0.0073 1.6E-07 58.5 9.3 55 162-220 23-77 (233)
56 PF13207 AAA_17: AAA domain; P 96.7 0.0012 2.5E-08 56.7 2.9 22 184-205 1-22 (121)
57 PRK14722 flhF flagellar biosyn 96.7 0.05 1.1E-06 56.1 15.2 85 182-274 137-224 (374)
58 PRK10865 protein disaggregatio 96.7 0.0042 9.1E-08 71.3 8.1 46 158-205 177-222 (857)
59 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0051 1.1E-07 70.4 8.6 47 157-205 185-231 (852)
60 PRK12323 DNA polymerase III su 96.7 0.0088 1.9E-07 65.3 9.9 47 158-205 15-61 (700)
61 TIGR02639 ClpA ATP-dependent C 96.6 0.0063 1.4E-07 68.9 8.9 46 158-205 181-226 (731)
62 PRK03992 proteasome-activating 96.6 0.0053 1.1E-07 64.2 7.2 52 154-205 126-188 (389)
63 TIGR03689 pup_AAA proteasome A 96.5 0.0071 1.5E-07 64.8 8.0 50 156-205 179-239 (512)
64 PRK12377 putative replication 96.5 0.0088 1.9E-07 58.3 7.7 38 182-221 101-138 (248)
65 PRK07003 DNA polymerase III su 96.5 0.013 2.8E-07 64.9 9.8 47 158-205 15-61 (830)
66 PRK14961 DNA polymerase III su 96.5 0.017 3.6E-07 59.9 10.3 47 158-205 15-61 (363)
67 PLN03025 replication factor C 96.5 0.014 3.1E-07 59.3 9.6 46 158-205 12-57 (319)
68 PRK14957 DNA polymerase III su 96.5 0.012 2.6E-07 63.7 9.3 46 158-204 15-60 (546)
69 PRK06696 uridine kinase; Valid 96.4 0.0044 9.4E-08 59.6 5.3 41 164-204 3-44 (223)
70 PRK12727 flagellar biosynthesi 96.4 0.12 2.6E-06 55.4 16.2 23 182-204 350-372 (559)
71 TIGR03346 chaperone_ClpB ATP-d 96.4 0.0073 1.6E-07 69.5 7.9 46 158-205 172-217 (852)
72 PRK14962 DNA polymerase III su 96.4 0.019 4E-07 61.4 10.2 47 158-205 13-59 (472)
73 PHA00729 NTP-binding motif con 96.4 0.013 2.9E-07 55.9 8.1 34 170-205 7-40 (226)
74 TIGR02238 recomb_DMC1 meiotic 96.4 0.018 3.9E-07 58.2 9.4 104 172-275 86-201 (313)
75 cd01133 F1-ATPase_beta F1 ATP 96.4 0.0092 2E-07 58.7 7.1 92 182-275 69-173 (274)
76 PRK07667 uridine kinase; Provi 96.4 0.0052 1.1E-07 57.7 5.2 37 168-204 3-39 (193)
77 PRK08084 DNA replication initi 96.3 0.01 2.2E-07 57.6 7.0 59 158-220 22-81 (235)
78 PRK05642 DNA replication initi 96.3 0.017 3.6E-07 56.0 8.4 37 182-220 45-81 (234)
79 PRK00440 rfc replication facto 96.3 0.024 5.3E-07 57.2 10.0 46 158-205 16-61 (319)
80 PRK14949 DNA polymerase III su 96.3 0.019 4.1E-07 64.9 9.6 47 158-205 15-61 (944)
81 PLN03187 meiotic recombination 96.3 0.019 4.1E-07 58.6 9.0 102 173-274 117-230 (344)
82 PRK06995 flhF flagellar biosyn 96.3 0.25 5.4E-06 52.8 17.6 24 182-205 256-279 (484)
83 PRK15455 PrkA family serine pr 96.3 0.0054 1.2E-07 65.8 5.1 45 160-204 77-125 (644)
84 PRK04301 radA DNA repair and r 96.2 0.03 6.6E-07 56.8 10.4 103 172-274 92-207 (317)
85 PRK14960 DNA polymerase III su 96.2 0.024 5.2E-07 62.1 9.9 47 158-205 14-60 (702)
86 TIGR00763 lon ATP-dependent pr 96.2 0.04 8.7E-07 62.8 12.3 53 158-212 319-375 (775)
87 COG0466 Lon ATP-dependent Lon 96.2 0.0056 1.2E-07 66.5 5.0 106 156-277 320-429 (782)
88 PRK14963 DNA polymerase III su 96.2 0.026 5.5E-07 60.9 10.1 46 159-205 14-59 (504)
89 PF08423 Rad51: Rad51; InterP 96.2 0.014 3.1E-07 57.2 7.5 104 171-274 27-142 (256)
90 PF00308 Bac_DnaA: Bacterial d 96.2 0.056 1.2E-06 51.7 11.4 96 159-277 9-109 (219)
91 PRK07952 DNA replication prote 96.2 0.026 5.5E-07 54.9 9.1 51 167-219 84-134 (244)
92 PRK05541 adenylylsulfate kinas 96.1 0.0081 1.8E-07 55.3 5.2 36 181-218 6-41 (176)
93 PRK14955 DNA polymerase III su 96.1 0.026 5.7E-07 59.1 9.4 47 158-205 15-61 (397)
94 PRK14969 DNA polymerase III su 96.1 0.037 8E-07 60.1 10.8 46 159-205 16-61 (527)
95 TIGR02239 recomb_RAD51 DNA rep 96.1 0.032 6.9E-07 56.5 9.6 105 170-274 84-200 (316)
96 PF05673 DUF815: Protein of un 96.1 0.02 4.3E-07 55.1 7.6 52 154-205 22-75 (249)
97 PTZ00361 26 proteosome regulat 96.1 0.015 3.3E-07 61.3 7.4 52 159-212 183-245 (438)
98 PTZ00454 26S protease regulato 96.1 0.013 2.8E-07 61.3 6.7 52 154-205 140-202 (398)
99 PRK08691 DNA polymerase III su 96.1 0.027 5.8E-07 62.2 9.3 46 158-204 15-60 (709)
100 PLN03186 DNA repair protein RA 96.0 0.047 1E-06 55.8 10.4 104 171-274 112-227 (342)
101 PRK14958 DNA polymerase III su 96.0 0.034 7.5E-07 60.0 9.9 47 158-205 15-61 (509)
102 cd01394 radB RadB. The archaea 96.0 0.033 7.1E-07 53.2 8.8 98 171-274 8-112 (218)
103 PRK14088 dnaA chromosomal repl 96.0 0.028 6E-07 59.7 8.9 96 158-276 105-205 (440)
104 PRK08181 transposase; Validate 96.0 0.11 2.4E-06 51.4 12.4 23 183-205 107-129 (269)
105 COG0572 Udk Uridine kinase [Nu 95.9 0.02 4.4E-07 54.1 6.8 79 181-267 7-86 (218)
106 PF00448 SRP54: SRP54-type pro 95.9 0.02 4.3E-07 53.9 6.8 56 182-239 1-58 (196)
107 KOG2004 Mitochondrial ATP-depe 95.9 0.014 3E-07 63.5 6.1 105 156-276 408-516 (906)
108 COG1419 FlhF Flagellar GTP-bin 95.9 0.05 1.1E-06 56.0 9.9 74 181-260 202-278 (407)
109 PRK12402 replication factor C 95.9 0.0094 2E-07 60.8 4.9 46 158-205 14-59 (337)
110 PRK14951 DNA polymerase III su 95.8 0.039 8.4E-07 60.7 9.5 46 158-204 15-60 (618)
111 TIGR02397 dnaX_nterm DNA polym 95.8 0.067 1.4E-06 55.0 10.9 47 158-205 13-59 (355)
112 PRK05896 DNA polymerase III su 95.8 0.024 5.2E-07 61.7 7.6 47 158-205 15-61 (605)
113 COG0468 RecA RecA/RadA recombi 95.8 0.059 1.3E-06 53.3 9.7 99 175-276 53-152 (279)
114 PRK06645 DNA polymerase III su 95.8 0.056 1.2E-06 58.2 10.2 47 158-205 20-66 (507)
115 TIGR03499 FlhF flagellar biosy 95.8 0.041 8.8E-07 54.9 8.6 25 181-205 193-217 (282)
116 COG1618 Predicted nucleotide k 95.8 0.0087 1.9E-07 53.5 3.3 33 182-216 5-38 (179)
117 PRK14964 DNA polymerase III su 95.8 0.046 1E-06 58.4 9.4 46 158-204 12-57 (491)
118 cd01120 RecA-like_NTPases RecA 95.8 0.053 1.2E-06 48.3 8.7 40 184-225 1-40 (165)
119 PRK00149 dnaA chromosomal repl 95.7 0.039 8.5E-07 58.9 8.9 94 160-276 124-222 (450)
120 PF13238 AAA_18: AAA domain; P 95.7 0.0072 1.6E-07 52.0 2.7 21 185-205 1-21 (129)
121 COG2255 RuvB Holliday junction 95.7 0.011 2.3E-07 57.7 4.0 49 157-205 24-75 (332)
122 PRK05480 uridine/cytidine kina 95.7 0.0095 2.1E-07 56.5 3.7 25 181-205 5-29 (209)
123 PF00485 PRK: Phosphoribulokin 95.7 0.0074 1.6E-07 56.6 2.9 83 184-269 1-87 (194)
124 TIGR01243 CDC48 AAA family ATP 95.7 0.024 5.3E-07 64.2 7.5 50 156-205 175-235 (733)
125 TIGR00362 DnaA chromosomal rep 95.7 0.043 9.2E-07 57.7 8.8 94 160-276 112-210 (405)
126 PTZ00301 uridine kinase; Provi 95.7 0.011 2.3E-07 56.2 3.8 23 182-204 3-25 (210)
127 TIGR02236 recomb_radA DNA repa 95.7 0.083 1.8E-06 53.4 10.5 65 173-237 86-154 (310)
128 TIGR00235 udk uridine kinase. 95.7 0.011 2.4E-07 56.0 3.9 25 181-205 5-29 (207)
129 PRK09270 nucleoside triphospha 95.6 0.016 3.4E-07 55.9 4.9 26 179-204 30-55 (229)
130 PRK14954 DNA polymerase III su 95.6 0.057 1.2E-06 59.5 9.8 47 158-205 15-61 (620)
131 PRK08233 hypothetical protein; 95.6 0.011 2.3E-07 54.6 3.5 24 182-205 3-26 (182)
132 PTZ00035 Rad51 protein; Provis 95.6 0.087 1.9E-06 53.9 10.4 106 170-275 106-223 (337)
133 COG0542 clpA ATP-binding subun 95.6 0.017 3.6E-07 64.3 5.5 47 156-204 167-213 (786)
134 PRK14956 DNA polymerase III su 95.6 0.04 8.6E-07 58.5 8.0 47 158-205 17-63 (484)
135 PRK07994 DNA polymerase III su 95.6 0.05 1.1E-06 60.0 9.1 47 158-205 15-61 (647)
136 cd00983 recA RecA is a bacter 95.6 0.04 8.8E-07 55.7 7.7 87 180-275 53-143 (325)
137 PRK14087 dnaA chromosomal repl 95.5 0.056 1.2E-06 57.6 9.0 99 158-277 115-218 (450)
138 PRK14723 flhF flagellar biosyn 95.5 0.69 1.5E-05 52.0 17.7 23 182-204 185-207 (767)
139 PRK07940 DNA polymerase III su 95.5 0.084 1.8E-06 55.1 10.1 46 159-204 5-58 (394)
140 KOG0733 Nuclear AAA ATPase (VC 95.5 0.053 1.1E-06 58.1 8.4 96 158-277 189-294 (802)
141 PRK14721 flhF flagellar biosyn 95.5 1.1 2.3E-05 47.2 18.0 23 182-204 191-213 (420)
142 CHL00195 ycf46 Ycf46; Provisio 95.4 0.52 1.1E-05 50.7 16.0 48 158-205 227-282 (489)
143 TIGR02881 spore_V_K stage V sp 95.4 0.015 3.3E-07 57.2 4.2 45 160-204 7-64 (261)
144 PHA02544 44 clamp loader, smal 95.4 0.02 4.4E-07 57.9 5.1 49 156-205 18-66 (316)
145 TIGR02639 ClpA ATP-dependent C 95.4 0.042 9.1E-07 62.3 8.2 60 158-222 453-519 (731)
146 PRK06547 hypothetical protein; 95.4 0.024 5.1E-07 52.2 5.1 26 180-205 13-38 (172)
147 KOG0991 Replication factor C, 95.4 0.041 8.9E-07 52.1 6.5 47 156-204 24-70 (333)
148 PRK14970 DNA polymerase III su 95.4 0.097 2.1E-06 54.2 10.2 47 158-205 16-62 (367)
149 TIGR02012 tigrfam_recA protein 95.4 0.053 1.1E-06 54.8 7.8 90 180-275 53-143 (321)
150 TIGR01069 mutS2 MutS2 family p 95.4 0.095 2.1E-06 59.5 10.7 23 182-204 322-344 (771)
151 PRK12726 flagellar biosynthesi 95.4 0.55 1.2E-05 48.5 15.1 86 181-274 205-294 (407)
152 PRK06762 hypothetical protein; 95.3 0.015 3.3E-07 52.8 3.5 24 182-205 2-25 (166)
153 PRK08903 DnaA regulatory inact 95.3 0.028 6.1E-07 54.0 5.5 43 162-205 22-65 (227)
154 cd02019 NK Nucleoside/nucleoti 95.3 0.014 3.1E-07 44.8 2.8 22 184-205 1-22 (69)
155 PLN00020 ribulose bisphosphate 95.3 0.044 9.5E-07 56.0 6.7 26 180-205 146-171 (413)
156 PRK09354 recA recombinase A; P 95.3 0.063 1.4E-06 54.8 8.0 98 172-275 49-148 (349)
157 PF13671 AAA_33: AAA domain; P 95.3 0.014 3E-07 51.4 2.9 21 184-204 1-21 (143)
158 PRK06002 fliI flagellum-specif 95.2 0.091 2E-06 55.3 9.3 92 182-276 165-265 (450)
159 PRK08939 primosomal protein Dn 95.2 0.058 1.3E-06 54.4 7.6 57 163-221 135-193 (306)
160 cd02025 PanK Pantothenate kina 95.2 0.072 1.6E-06 51.1 8.0 73 184-263 1-76 (220)
161 COG1484 DnaC DNA replication p 95.2 0.035 7.5E-07 54.5 5.8 54 164-220 88-141 (254)
162 TIGR00602 rad24 checkpoint pro 95.2 0.024 5.2E-07 62.5 5.2 52 154-205 79-133 (637)
163 PRK09111 DNA polymerase III su 95.2 0.1 2.2E-06 57.5 9.9 49 156-205 21-69 (598)
164 PF01695 IstB_IS21: IstB-like 95.2 0.015 3.2E-07 53.8 3.0 36 182-219 47-82 (178)
165 PRK12422 chromosomal replicati 95.1 0.055 1.2E-06 57.5 7.3 73 182-277 141-214 (445)
166 PRK06526 transposase; Provisio 95.1 0.03 6.5E-07 54.9 5.0 24 182-205 98-121 (254)
167 TIGR01360 aden_kin_iso1 adenyl 95.1 0.019 4.2E-07 53.1 3.5 24 181-204 2-25 (188)
168 PRK06921 hypothetical protein; 95.1 0.021 4.7E-07 56.3 3.8 37 182-220 117-154 (266)
169 cd02023 UMPK Uridine monophosp 95.0 0.016 3.4E-07 54.5 2.7 21 184-204 1-21 (198)
170 PRK14950 DNA polymerase III su 95.0 0.058 1.2E-06 59.5 7.5 47 158-205 15-61 (585)
171 PRK14952 DNA polymerase III su 95.0 0.13 2.9E-06 56.2 10.1 46 159-205 13-58 (584)
172 PRK09183 transposase/IS protei 95.0 0.079 1.7E-06 52.1 7.6 23 183-205 103-125 (259)
173 PRK00771 signal recognition pa 94.9 0.16 3.4E-06 53.8 10.1 88 181-274 94-184 (437)
174 PRK10867 signal recognition pa 94.9 0.15 3.2E-06 53.9 9.8 24 181-204 99-122 (433)
175 TIGR00678 holB DNA polymerase 94.9 0.21 4.6E-06 46.3 10.0 35 170-205 3-37 (188)
176 PRK13531 regulatory ATPase Rav 94.9 0.036 7.9E-07 58.7 5.2 43 159-205 20-62 (498)
177 PRK03839 putative kinase; Prov 94.9 0.021 4.5E-07 52.8 3.0 22 184-205 2-23 (180)
178 TIGR01241 FtsH_fam ATP-depende 94.8 0.089 1.9E-06 56.9 8.3 51 155-205 51-111 (495)
179 TIGR00959 ffh signal recogniti 94.8 0.17 3.7E-06 53.3 10.0 24 181-204 98-121 (428)
180 CHL00176 ftsH cell division pr 94.8 0.041 9E-07 60.9 5.7 49 157-205 181-239 (638)
181 PRK14738 gmk guanylate kinase; 94.8 0.026 5.5E-07 53.6 3.5 32 174-205 5-36 (206)
182 cd03115 SRP The signal recogni 94.8 0.11 2.4E-06 47.6 7.7 21 184-204 2-22 (173)
183 PRK11889 flhF flagellar biosyn 94.8 0.18 3.9E-06 52.2 9.7 24 181-204 240-263 (436)
184 KOG0735 AAA+-type ATPase [Post 94.8 0.068 1.5E-06 58.2 6.8 71 182-276 431-505 (952)
185 TIGR00150 HI0065_YjeE ATPase, 94.7 0.051 1.1E-06 47.6 4.9 41 166-206 6-46 (133)
186 PRK11034 clpA ATP-dependent Cl 94.7 0.036 7.7E-07 62.6 5.0 45 159-205 186-230 (758)
187 PRK14953 DNA polymerase III su 94.7 0.21 4.6E-06 53.7 10.5 46 158-204 15-60 (486)
188 PRK04040 adenylate kinase; Pro 94.6 0.028 6.1E-07 52.5 3.3 23 182-204 2-24 (188)
189 PRK10865 protein disaggregatio 94.6 0.15 3.2E-06 58.8 9.8 47 158-204 567-620 (857)
190 TIGR02322 phosphon_PhnN phosph 94.6 0.028 6.1E-07 51.8 3.3 23 183-205 2-24 (179)
191 PRK07764 DNA polymerase III su 94.6 0.16 3.5E-06 57.9 9.9 46 159-205 15-60 (824)
192 cd01131 PilT Pilus retraction 94.6 0.043 9.3E-07 51.7 4.5 85 183-278 2-87 (198)
193 cd02024 NRK1 Nicotinamide ribo 94.6 0.024 5.2E-07 52.8 2.7 22 184-205 1-22 (187)
194 TIGR00390 hslU ATP-dependent p 94.6 0.1 2.2E-06 54.4 7.4 52 159-212 12-75 (441)
195 TIGR03263 guanyl_kin guanylate 94.6 0.028 6E-07 51.8 3.1 22 183-204 2-23 (180)
196 PRK05703 flhF flagellar biosyn 94.5 0.16 3.5E-06 53.6 9.0 23 182-204 221-243 (424)
197 KOG1514 Origin recognition com 94.5 0.37 8E-06 52.7 11.6 122 157-287 394-544 (767)
198 PF00158 Sigma54_activat: Sigm 94.5 0.046 9.9E-07 50.1 4.3 45 161-205 1-45 (168)
199 TIGR03345 VI_ClpV1 type VI sec 94.5 0.11 2.4E-06 59.6 8.3 48 157-204 564-618 (852)
200 COG1428 Deoxynucleoside kinase 94.5 0.03 6.5E-07 52.4 3.0 24 182-205 4-27 (216)
201 cd01878 HflX HflX subfamily. 94.5 0.052 1.1E-06 51.0 4.7 26 181-206 40-65 (204)
202 PRK10463 hydrogenase nickel in 94.4 0.27 5.7E-06 48.9 9.7 92 180-276 102-195 (290)
203 PRK00625 shikimate kinase; Pro 94.4 0.031 6.7E-07 51.4 3.0 21 184-204 2-22 (173)
204 PRK08972 fliI flagellum-specif 94.4 0.17 3.7E-06 53.2 8.7 91 182-276 162-263 (444)
205 PRK00889 adenylylsulfate kinas 94.4 0.04 8.6E-07 50.6 3.7 24 182-205 4-27 (175)
206 cd02028 UMPK_like Uridine mono 94.4 0.029 6.3E-07 51.9 2.8 22 184-205 1-22 (179)
207 PRK05201 hslU ATP-dependent pr 94.4 0.097 2.1E-06 54.5 6.8 48 158-205 14-73 (443)
208 TIGR01243 CDC48 AAA family ATP 94.4 0.14 3E-06 58.2 8.8 49 157-205 451-510 (733)
209 TIGR00064 ftsY signal recognit 94.4 0.35 7.6E-06 47.9 10.5 24 181-204 71-94 (272)
210 COG1124 DppF ABC-type dipeptid 94.3 0.056 1.2E-06 51.7 4.5 23 182-204 33-55 (252)
211 PRK00131 aroK shikimate kinase 94.3 0.039 8.4E-07 50.2 3.4 24 182-205 4-27 (175)
212 KOG1969 DNA replication checkp 94.3 0.11 2.3E-06 56.9 7.0 52 181-237 325-377 (877)
213 PRK12724 flagellar biosynthesi 94.3 0.11 2.5E-06 54.1 7.0 23 182-204 223-245 (432)
214 TIGR03346 chaperone_ClpB ATP-d 94.3 0.24 5.3E-06 57.1 10.4 47 158-204 564-617 (852)
215 cd02020 CMPK Cytidine monophos 94.3 0.033 7.1E-07 49.2 2.7 21 184-204 1-21 (147)
216 TIGR01359 UMP_CMP_kin_fam UMP- 94.2 0.032 7E-07 51.5 2.7 21 184-204 1-21 (183)
217 PRK00300 gmk guanylate kinase; 94.2 0.037 8E-07 52.2 3.2 24 182-205 5-28 (205)
218 PRK12597 F0F1 ATP synthase sub 94.2 0.14 2.9E-06 54.4 7.6 93 182-275 143-247 (461)
219 COG1373 Predicted ATPase (AAA+ 94.2 0.18 3.8E-06 52.9 8.5 71 184-280 39-109 (398)
220 cd01135 V_A-ATPase_B V/A-type 94.2 0.17 3.8E-06 49.8 7.8 94 182-275 69-176 (276)
221 PRK13947 shikimate kinase; Pro 94.2 0.036 7.8E-07 50.6 2.9 21 184-204 3-23 (171)
222 PF07728 AAA_5: AAA domain (dy 94.2 0.079 1.7E-06 46.5 5.1 42 185-231 2-43 (139)
223 PRK06217 hypothetical protein; 94.2 0.036 7.9E-07 51.4 3.0 22 184-205 3-24 (183)
224 PF00625 Guanylate_kin: Guanyl 94.2 0.06 1.3E-06 49.9 4.4 37 182-220 2-38 (183)
225 PF03205 MobB: Molybdopterin g 94.2 0.038 8.2E-07 49.0 2.9 39 183-222 1-39 (140)
226 cd00071 GMPK Guanosine monopho 94.2 0.042 9.2E-07 48.4 3.2 22 184-205 1-22 (137)
227 PLN02318 phosphoribulokinase/u 94.2 0.059 1.3E-06 58.3 4.9 33 172-204 55-87 (656)
228 cd01121 Sms Sms (bacterial rad 94.2 0.2 4.4E-06 51.9 8.6 100 169-275 69-168 (372)
229 PRK10751 molybdopterin-guanine 94.1 0.046 1E-06 50.1 3.3 25 181-205 5-29 (173)
230 PRK08927 fliI flagellum-specif 94.1 0.15 3.3E-06 53.6 7.6 92 181-276 157-259 (442)
231 PF08477 Miro: Miro-like prote 94.1 0.047 1E-06 46.2 3.2 23 185-207 2-24 (119)
232 PRK09280 F0F1 ATP synthase sub 94.0 0.19 4.1E-06 53.2 8.2 94 182-276 144-249 (463)
233 CHL00095 clpC Clp protease ATP 94.0 0.26 5.7E-06 56.7 10.1 47 158-204 508-561 (821)
234 PRK03846 adenylylsulfate kinas 94.0 0.052 1.1E-06 51.0 3.7 25 180-204 22-46 (198)
235 cd02021 GntK Gluconate kinase 94.0 0.039 8.4E-07 49.2 2.7 22 184-205 1-22 (150)
236 PF08298 AAA_PrkA: PrkA AAA do 94.0 0.091 2E-06 53.3 5.4 49 156-204 58-110 (358)
237 cd00227 CPT Chloramphenicol (C 94.0 0.046 1E-06 50.3 3.2 23 183-205 3-25 (175)
238 PRK14959 DNA polymerase III su 93.9 0.3 6.5E-06 53.7 9.8 46 159-205 16-61 (624)
239 CHL00181 cbbX CbbX; Provisiona 93.9 0.096 2.1E-06 52.4 5.6 46 160-205 24-82 (287)
240 KOG0744 AAA+-type ATPase [Post 93.9 0.24 5.2E-06 49.4 8.0 80 182-275 177-260 (423)
241 PRK05439 pantothenate kinase; 93.9 0.084 1.8E-06 53.1 5.1 81 180-266 84-166 (311)
242 PF07726 AAA_3: ATPase family 93.9 0.048 1E-06 47.2 2.8 42 185-231 2-43 (131)
243 PRK14086 dnaA chromosomal repl 93.9 0.17 3.7E-06 55.3 7.7 45 161-205 291-337 (617)
244 PRK08149 ATP synthase SpaL; Va 93.9 0.22 4.9E-06 52.3 8.4 91 182-276 151-252 (428)
245 TIGR03575 selen_PSTK_euk L-ser 93.9 0.2 4.4E-06 51.1 7.8 21 185-205 2-22 (340)
246 PRK10078 ribose 1,5-bisphospho 93.8 0.049 1.1E-06 50.6 3.2 23 183-205 3-25 (186)
247 TIGR00554 panK_bact pantothena 93.8 0.053 1.1E-06 54.1 3.4 78 181-266 61-142 (290)
248 PRK04296 thymidine kinase; Pro 93.8 0.079 1.7E-06 49.5 4.4 84 183-274 3-87 (190)
249 PTZ00185 ATPase alpha subunit; 93.8 0.23 4.9E-06 53.0 8.1 95 182-276 189-300 (574)
250 PF12775 AAA_7: P-loop contain 93.8 0.16 3.5E-06 50.3 6.8 89 169-277 23-112 (272)
251 PF00910 RNA_helicase: RNA hel 93.8 0.042 9.2E-07 46.2 2.3 21 185-205 1-21 (107)
252 PRK13975 thymidylate kinase; P 93.8 0.056 1.2E-06 50.5 3.4 23 183-205 3-25 (196)
253 TIGR02640 gas_vesic_GvpN gas v 93.8 0.17 3.7E-06 49.8 7.0 56 166-230 9-64 (262)
254 PF00154 RecA: recA bacterial 93.7 0.14 3E-06 51.7 6.3 90 181-276 52-142 (322)
255 KOG0741 AAA+-type ATPase [Post 93.7 0.44 9.5E-06 50.5 9.9 74 180-280 536-613 (744)
256 PF01583 APS_kinase: Adenylyls 93.7 0.069 1.5E-06 48.1 3.7 36 182-219 2-37 (156)
257 COG0470 HolB ATPase involved i 93.7 0.4 8.7E-06 48.3 9.8 46 160-205 2-47 (325)
258 PRK04328 hypothetical protein; 93.7 0.29 6.3E-06 47.8 8.4 61 172-236 13-73 (249)
259 PRK09519 recA DNA recombinatio 93.7 0.24 5.1E-06 55.8 8.6 100 170-275 47-148 (790)
260 PRK13949 shikimate kinase; Pro 93.7 0.055 1.2E-06 49.6 3.1 22 184-205 3-24 (169)
261 PF05659 RPW8: Arabidopsis bro 93.7 0.59 1.3E-05 41.7 9.5 107 2-131 8-115 (147)
262 cd00464 SK Shikimate kinase (S 93.7 0.054 1.2E-06 48.3 3.0 20 185-204 2-21 (154)
263 PRK06620 hypothetical protein; 93.7 0.12 2.6E-06 49.3 5.4 50 156-205 14-67 (214)
264 TIGR01313 therm_gnt_kin carboh 93.6 0.047 1E-06 49.4 2.5 21 185-205 1-21 (163)
265 PRK05563 DNA polymerase III su 93.6 0.45 9.7E-06 52.2 10.5 46 158-204 15-60 (559)
266 PRK10787 DNA-binding ATP-depen 93.6 0.085 1.8E-06 60.0 5.0 48 157-204 320-371 (784)
267 cd01136 ATPase_flagellum-secre 93.6 0.29 6.2E-06 49.7 8.3 90 182-275 69-169 (326)
268 PRK06067 flagellar accessory p 93.6 0.37 8E-06 46.5 8.8 99 172-274 15-129 (234)
269 PRK14971 DNA polymerase III su 93.5 0.43 9.2E-06 52.9 10.2 46 158-204 16-61 (614)
270 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.5 0.32 7E-06 43.1 7.7 24 182-205 26-49 (144)
271 TIGR01425 SRP54_euk signal rec 93.5 0.45 9.7E-06 50.1 9.8 24 181-204 99-122 (429)
272 cd00820 PEPCK_HprK Phosphoenol 93.5 0.068 1.5E-06 44.9 3.1 22 182-203 15-36 (107)
273 PRK14965 DNA polymerase III su 93.5 0.45 9.8E-06 52.4 10.4 47 158-205 15-61 (576)
274 PRK14530 adenylate kinase; Pro 93.5 0.06 1.3E-06 51.3 3.1 22 183-204 4-25 (215)
275 cd01672 TMPK Thymidine monopho 93.5 0.13 2.9E-06 47.7 5.5 22 184-205 2-23 (200)
276 TIGR02880 cbbX_cfxQ probable R 93.5 0.13 2.9E-06 51.3 5.6 45 160-204 23-80 (284)
277 PRK12723 flagellar biosynthesi 93.5 0.48 1E-05 49.3 9.9 86 181-274 173-263 (388)
278 KOG3347 Predicted nucleotide k 93.4 0.14 3.1E-06 45.3 5.0 70 182-266 7-77 (176)
279 cd01132 F1_ATPase_alpha F1 ATP 93.4 0.25 5.5E-06 48.6 7.4 90 182-275 69-171 (274)
280 KOG1532 GTPase XAB1, interacts 93.4 0.07 1.5E-06 51.8 3.4 26 181-206 18-43 (366)
281 COG2607 Predicted ATPase (AAA+ 93.4 0.22 4.8E-06 47.6 6.6 55 156-212 57-113 (287)
282 TIGR03498 FliI_clade3 flagella 93.4 0.29 6.2E-06 51.4 8.2 24 182-205 140-163 (418)
283 COG0563 Adk Adenylate kinase a 93.4 0.063 1.4E-06 49.6 3.0 22 184-205 2-23 (178)
284 PF03308 ArgK: ArgK protein; 93.4 0.13 2.8E-06 50.0 5.1 38 167-204 14-51 (266)
285 PF14516 AAA_35: AAA-like doma 93.4 0.76 1.6E-05 46.9 11.1 117 156-277 8-139 (331)
286 TIGR03877 thermo_KaiC_1 KaiC d 93.3 0.43 9.4E-06 46.2 8.9 56 172-231 11-66 (237)
287 PRK00409 recombination and DNA 93.3 8.6 0.00019 44.0 20.5 23 181-203 326-348 (782)
288 cd04139 RalA_RalB RalA/RalB su 93.3 0.08 1.7E-06 47.3 3.5 23 184-206 2-24 (164)
289 TIGR00073 hypB hydrogenase acc 93.3 0.077 1.7E-06 50.3 3.5 26 180-205 20-45 (207)
290 PF06309 Torsin: Torsin; Inte 93.3 0.17 3.7E-06 43.6 5.3 47 159-205 25-76 (127)
291 COG1222 RPT1 ATP-dependent 26S 93.3 0.12 2.5E-06 52.2 4.8 57 154-212 146-213 (406)
292 COG1703 ArgK Putative periplas 93.3 0.15 3.3E-06 50.3 5.4 63 168-230 37-99 (323)
293 PRK08472 fliI flagellum-specif 93.2 0.29 6.2E-06 51.6 7.9 39 182-224 157-195 (434)
294 PRK12678 transcription termina 93.2 0.13 2.9E-06 55.3 5.4 89 182-275 416-513 (672)
295 TIGR00764 lon_rel lon-related 93.2 0.24 5.1E-06 54.8 7.6 76 156-238 15-92 (608)
296 PRK05057 aroK shikimate kinase 93.2 0.076 1.6E-06 48.8 3.2 24 182-205 4-27 (172)
297 COG1936 Predicted nucleotide k 93.2 0.067 1.4E-06 48.5 2.7 20 184-203 2-21 (180)
298 PRK09099 type III secretion sy 93.2 0.27 5.8E-06 51.9 7.6 93 181-276 162-264 (441)
299 PRK06761 hypothetical protein; 93.1 0.17 3.6E-06 50.3 5.7 23 183-205 4-26 (282)
300 COG0194 Gmk Guanylate kinase [ 93.1 0.13 2.9E-06 47.3 4.5 25 182-206 4-28 (191)
301 PRK10416 signal recognition pa 93.1 0.4 8.8E-06 48.6 8.6 25 181-205 113-137 (318)
302 cd02027 APSK Adenosine 5'-phos 93.1 0.068 1.5E-06 47.8 2.7 22 184-205 1-22 (149)
303 TIGR03305 alt_F1F0_F1_bet alte 93.1 0.21 4.5E-06 52.7 6.7 94 182-276 138-243 (449)
304 PRK12339 2-phosphoglycerate ki 93.1 0.089 1.9E-06 49.5 3.5 24 182-205 3-26 (197)
305 TIGR00176 mobB molybdopterin-g 93.1 0.07 1.5E-06 48.1 2.7 35 184-219 1-35 (155)
306 PRK13946 shikimate kinase; Pro 93.1 0.08 1.7E-06 49.2 3.2 23 182-204 10-32 (184)
307 PF00005 ABC_tran: ABC transpo 93.1 0.068 1.5E-06 46.7 2.6 24 182-205 11-34 (137)
308 COG1116 TauB ABC-type nitrate/ 93.0 0.079 1.7E-06 51.0 3.1 23 182-204 29-51 (248)
309 COG1102 Cmk Cytidylate kinase 93.0 0.075 1.6E-06 47.7 2.7 22 184-205 2-23 (179)
310 TIGR01040 V-ATPase_V1_B V-type 93.0 0.27 5.9E-06 51.8 7.3 95 182-276 141-258 (466)
311 PRK13695 putative NTPase; Prov 93.0 0.099 2.1E-06 48.0 3.6 34 184-218 2-35 (174)
312 PRK09825 idnK D-gluconate kina 93.0 0.085 1.9E-06 48.7 3.2 23 183-205 4-26 (176)
313 PRK09435 membrane ATPase/prote 93.0 0.16 3.5E-06 51.7 5.4 36 169-204 43-78 (332)
314 PRK14948 DNA polymerase III su 93.0 0.62 1.3E-05 51.6 10.4 47 158-205 15-61 (620)
315 PRK04182 cytidylate kinase; Pr 92.9 0.087 1.9E-06 48.2 3.2 22 184-205 2-23 (180)
316 TIGR01041 ATP_syn_B_arch ATP s 92.9 0.36 7.7E-06 51.3 8.1 95 182-276 141-249 (458)
317 PRK14974 cell division protein 92.9 0.53 1.1E-05 48.1 9.1 24 181-204 139-162 (336)
318 PRK07594 type III secretion sy 92.9 0.34 7.3E-06 51.0 7.9 91 182-276 155-256 (433)
319 COG1126 GlnQ ABC-type polar am 92.9 0.14 3.1E-06 48.2 4.5 35 182-219 28-62 (240)
320 PF02562 PhoH: PhoH-like prote 92.9 0.14 3.1E-06 48.3 4.6 53 163-219 4-56 (205)
321 COG0467 RAD55 RecA-superfamily 92.9 0.15 3.3E-06 50.1 5.1 48 180-231 21-68 (260)
322 COG2019 AdkA Archaeal adenylat 92.9 0.091 2E-06 47.4 3.1 23 182-204 4-26 (189)
323 PRK13948 shikimate kinase; Pro 92.9 0.096 2.1E-06 48.6 3.4 24 181-204 9-32 (182)
324 COG0003 ArsA Predicted ATPase 92.9 0.14 3.1E-06 51.7 4.9 47 182-230 2-48 (322)
325 PF03193 DUF258: Protein of un 92.9 0.16 3.4E-06 46.0 4.6 36 166-206 24-59 (161)
326 PRK09087 hypothetical protein; 92.9 0.091 2E-06 50.6 3.3 24 182-205 44-67 (226)
327 PRK14527 adenylate kinase; Pro 92.9 0.097 2.1E-06 48.8 3.4 25 181-205 5-29 (191)
328 PRK06936 type III secretion sy 92.8 0.38 8.2E-06 50.7 8.1 92 181-276 161-263 (439)
329 TIGR00750 lao LAO/AO transport 92.8 0.14 3E-06 51.5 4.8 37 169-205 21-57 (300)
330 PRK08451 DNA polymerase III su 92.8 0.79 1.7E-05 49.7 10.7 46 158-204 13-58 (535)
331 COG0714 MoxR-like ATPases [Gen 92.8 0.28 6E-06 50.1 7.0 64 159-231 24-87 (329)
332 PF00006 ATP-synt_ab: ATP synt 92.8 0.22 4.7E-06 47.5 5.8 37 183-223 16-52 (215)
333 TIGR02546 III_secr_ATP type II 92.8 0.57 1.2E-05 49.4 9.4 91 182-276 145-246 (422)
334 PRK07721 fliI flagellum-specif 92.8 0.51 1.1E-05 49.9 9.0 25 181-205 157-181 (438)
335 PRK11823 DNA repair protein Ra 92.8 0.51 1.1E-05 50.2 9.1 100 169-275 67-166 (446)
336 PLN02348 phosphoribulokinase 92.7 0.15 3.3E-06 52.6 4.9 26 180-205 47-72 (395)
337 COG1100 GTPase SAR1 and relate 92.7 0.097 2.1E-06 49.6 3.3 24 183-206 6-29 (219)
338 TIGR00960 3a0501s02 Type II (G 92.7 0.16 3.5E-06 48.3 4.8 24 182-205 29-52 (216)
339 PF14532 Sigma54_activ_2: Sigm 92.7 0.068 1.5E-06 47.1 2.0 44 162-205 1-44 (138)
340 TIGR03497 FliI_clade2 flagella 92.7 0.52 1.1E-05 49.5 8.9 25 181-205 136-160 (413)
341 PRK06793 fliI flagellum-specif 92.7 0.34 7.3E-06 51.0 7.5 91 182-276 156-257 (432)
342 PRK05688 fliI flagellum-specif 92.7 0.39 8.4E-06 50.8 7.9 91 182-276 168-269 (451)
343 PRK05922 type III secretion sy 92.7 0.45 9.8E-06 50.1 8.4 91 182-276 157-258 (434)
344 COG0593 DnaA ATPase involved i 92.7 0.37 8.1E-06 50.1 7.7 99 156-276 85-186 (408)
345 PRK15453 phosphoribulokinase; 92.7 0.57 1.2E-05 46.4 8.5 24 181-204 4-27 (290)
346 COG4608 AppF ABC-type oligopep 92.6 0.15 3.2E-06 49.8 4.4 94 181-277 38-139 (268)
347 PRK14737 gmk guanylate kinase; 92.6 0.14 3E-06 47.8 4.1 25 181-205 3-27 (186)
348 PRK05537 bifunctional sulfate 92.6 0.18 3.9E-06 55.3 5.5 48 157-204 367-414 (568)
349 COG0237 CoaE Dephospho-CoA kin 92.6 0.11 2.3E-06 49.0 3.3 23 182-204 2-24 (201)
350 TIGR02173 cyt_kin_arch cytidyl 92.6 0.11 2.3E-06 47.2 3.3 21 184-204 2-22 (171)
351 PRK07196 fliI flagellum-specif 92.6 0.45 9.7E-06 50.1 8.2 25 181-205 154-178 (434)
352 PF13521 AAA_28: AAA domain; P 92.5 0.08 1.7E-06 48.0 2.4 21 185-205 2-22 (163)
353 CHL00081 chlI Mg-protoporyphyr 92.5 0.14 3E-06 52.4 4.3 49 155-205 13-61 (350)
354 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.5 0.1 2.2E-06 49.7 3.1 24 182-205 30-53 (218)
355 cd03269 ABC_putative_ATPase Th 92.5 0.18 3.9E-06 47.7 4.8 34 182-218 26-59 (210)
356 PRK13765 ATP-dependent proteas 92.5 0.23 5E-06 55.0 6.2 77 156-238 28-105 (637)
357 cd03225 ABC_cobalt_CbiO_domain 92.5 0.1 2.3E-06 49.3 3.2 24 182-205 27-50 (211)
358 TIGR02030 BchI-ChlI magnesium 92.4 0.19 4.1E-06 51.3 5.2 44 159-204 4-47 (337)
359 PLN02796 D-glycerate 3-kinase 92.4 0.12 2.6E-06 52.6 3.7 25 181-205 99-123 (347)
360 PF10662 PduV-EutP: Ethanolami 92.4 0.11 2.3E-06 46.1 2.9 24 183-206 2-25 (143)
361 TIGR02902 spore_lonB ATP-depen 92.4 0.16 3.6E-06 55.2 5.0 45 159-205 65-109 (531)
362 COG1120 FepC ABC-type cobalami 92.4 0.1 2.2E-06 50.9 3.1 23 182-204 28-50 (258)
363 PF03266 NTPase_1: NTPase; In 92.4 0.11 2.3E-06 47.6 3.0 21 185-205 2-22 (168)
364 smart00173 RAS Ras subfamily o 92.4 0.13 2.8E-06 46.1 3.6 22 184-205 2-23 (164)
365 COG0542 clpA ATP-binding subun 92.4 0.16 3.6E-06 56.7 4.9 104 158-278 490-606 (786)
366 cd04119 RJL RJL (RabJ-Like) su 92.4 0.14 2.9E-06 45.9 3.6 22 185-206 3-24 (168)
367 TIGR02673 FtsE cell division A 92.3 0.18 4E-06 47.8 4.7 34 182-218 28-61 (214)
368 PRK05342 clpX ATP-dependent pr 92.3 0.19 4.1E-06 52.8 5.1 46 159-204 71-130 (412)
369 cd03265 ABC_DrrA DrrA is the A 92.3 0.19 4.1E-06 47.9 4.8 34 182-218 26-59 (220)
370 TIGR00041 DTMP_kinase thymidyl 92.3 0.27 5.9E-06 45.7 5.8 23 183-205 4-26 (195)
371 TIGR03496 FliI_clade1 flagella 92.3 0.33 7.2E-06 50.9 6.9 89 182-276 137-238 (411)
372 PF01926 MMR_HSR1: 50S ribosom 92.3 0.1 2.3E-06 44.1 2.7 21 185-205 2-22 (116)
373 cd01862 Rab7 Rab7 subfamily. 92.3 0.11 2.4E-06 46.9 3.0 22 184-205 2-23 (172)
374 PLN02200 adenylate kinase fami 92.3 0.13 2.8E-06 49.8 3.6 24 181-204 42-65 (234)
375 PRK03731 aroL shikimate kinase 92.3 0.12 2.5E-06 47.2 3.1 22 183-204 3-24 (171)
376 cd03116 MobB Molybdenum is an 92.3 0.13 2.9E-06 46.6 3.4 22 183-204 2-23 (159)
377 PRK09112 DNA polymerase III su 92.2 0.25 5.3E-06 50.9 5.7 49 156-205 20-68 (351)
378 TIGR01166 cbiO cobalt transpor 92.2 0.12 2.6E-06 48.1 3.1 24 182-205 18-41 (190)
379 cd03229 ABC_Class3 This class 92.2 0.12 2.6E-06 47.6 3.2 24 182-205 26-49 (178)
380 cd01122 GP4d_helicase GP4d_hel 92.2 1 2.2E-05 44.3 10.0 52 182-236 30-82 (271)
381 cd04163 Era Era subfamily. Er 92.2 0.13 2.9E-06 45.6 3.4 24 182-205 3-26 (168)
382 PRK08099 bifunctional DNA-bind 92.2 0.11 2.4E-06 54.3 3.2 24 181-204 218-241 (399)
383 cd02022 DPCK Dephospho-coenzym 92.1 0.11 2.3E-06 48.0 2.7 21 184-204 1-21 (179)
384 PRK08356 hypothetical protein; 92.1 0.14 3E-06 48.0 3.5 22 182-203 5-26 (195)
385 PRK06820 type III secretion sy 92.1 0.71 1.5E-05 48.8 9.0 89 182-276 163-264 (440)
386 cd01983 Fer4_NifH The Fer4_Nif 92.1 0.12 2.6E-06 41.5 2.7 22 184-205 1-22 (99)
387 TIGR00416 sms DNA repair prote 92.1 0.89 1.9E-05 48.5 9.9 102 168-276 80-181 (454)
388 cd01130 VirB11-like_ATPase Typ 92.1 0.15 3.1E-06 47.5 3.6 35 167-204 13-47 (186)
389 cd00876 Ras Ras family. The R 92.1 0.15 3.2E-06 45.2 3.5 21 185-205 2-22 (160)
390 cd04138 H_N_K_Ras_like H-Ras/N 92.1 0.15 3.3E-06 45.3 3.6 21 185-205 4-24 (162)
391 cd04159 Arl10_like Arl10-like 92.1 0.14 3.1E-06 45.0 3.4 21 185-205 2-22 (159)
392 TIGR01287 nifH nitrogenase iro 92.1 0.11 2.4E-06 51.5 2.9 22 183-204 1-22 (275)
393 KOG0727 26S proteasome regulat 92.1 0.44 9.5E-06 45.8 6.6 57 154-212 150-217 (408)
394 cd04155 Arl3 Arl3 subfamily. 92.1 0.12 2.5E-06 47.0 2.8 24 182-205 14-37 (173)
395 cd03264 ABC_drug_resistance_li 92.0 0.19 4.1E-06 47.6 4.4 21 184-204 27-47 (211)
396 COG3640 CooC CO dehydrogenase 92.0 0.27 5.8E-06 46.9 5.1 36 390-425 99-134 (255)
397 PRK00698 tmk thymidylate kinas 92.0 0.14 3E-06 48.0 3.4 23 183-205 4-26 (205)
398 cd02026 PRK Phosphoribulokinas 92.0 0.11 2.4E-06 51.5 2.7 21 184-204 1-21 (273)
399 cd03297 ABC_ModC_molybdenum_tr 92.0 0.14 3E-06 48.7 3.4 23 183-205 24-46 (214)
400 COG1136 SalX ABC-type antimicr 92.0 0.13 2.9E-06 49.1 3.2 23 182-204 31-53 (226)
401 cd03261 ABC_Org_Solvent_Resist 92.0 0.13 2.8E-06 49.7 3.1 24 182-205 26-49 (235)
402 TIGR03864 PQQ_ABC_ATP ABC tran 91.9 0.23 4.9E-06 48.0 4.9 24 182-205 27-50 (236)
403 PRK13540 cytochrome c biogenes 91.9 0.23 5.1E-06 46.6 4.8 34 182-218 27-60 (200)
404 PRK14493 putative bifunctional 91.9 0.13 2.9E-06 50.9 3.2 23 183-205 2-24 (274)
405 cd01428 ADK Adenylate kinase ( 91.9 0.13 2.8E-06 47.8 3.0 21 185-205 2-22 (194)
406 TIGR02315 ABC_phnC phosphonate 91.9 0.13 2.8E-06 49.8 3.1 24 182-205 28-51 (243)
407 TIGR00231 small_GTP small GTP- 91.9 0.16 3.5E-06 44.4 3.5 23 184-206 3-25 (161)
408 PRK01184 hypothetical protein; 91.9 0.13 2.9E-06 47.5 3.0 19 183-201 2-20 (184)
409 cd04113 Rab4 Rab4 subfamily. 91.9 0.17 3.6E-06 45.3 3.6 22 185-206 3-24 (161)
410 TIGR03574 selen_PSTK L-seryl-t 91.9 0.11 2.4E-06 50.6 2.7 21 185-205 2-22 (249)
411 cd03224 ABC_TM1139_LivF_branch 91.9 0.22 4.8E-06 47.4 4.7 24 182-205 26-49 (222)
412 cd03263 ABC_subfamily_A The AB 91.9 0.14 2.9E-06 48.9 3.2 24 182-205 28-51 (220)
413 PRK13541 cytochrome c biogenes 91.8 0.14 3E-06 47.9 3.2 24 182-205 26-49 (195)
414 COG0541 Ffh Signal recognition 91.8 14 0.0003 38.7 17.6 56 181-239 99-157 (451)
415 cd03256 ABC_PhnC_transporter A 91.8 0.13 2.9E-06 49.6 3.1 24 182-205 27-50 (241)
416 cd03238 ABC_UvrA The excision 91.8 0.14 3E-06 47.2 3.1 23 182-204 21-43 (176)
417 cd03293 ABC_NrtD_SsuB_transpor 91.8 0.14 3E-06 48.9 3.2 24 182-205 30-53 (220)
418 cd03259 ABC_Carb_Solutes_like 91.8 0.14 3E-06 48.6 3.2 23 182-204 26-48 (213)
419 cd03222 ABC_RNaseL_inhibitor T 91.8 0.14 2.9E-06 47.4 2.9 24 182-205 25-48 (177)
420 TIGR01039 atpD ATP synthase, F 91.8 0.6 1.3E-05 49.4 8.0 94 182-276 143-248 (461)
421 cd03260 ABC_PstB_phosphate_tra 91.8 0.14 3.1E-06 49.1 3.2 23 182-204 26-48 (227)
422 PRK11608 pspF phage shock prot 91.7 0.18 3.9E-06 51.4 4.0 47 159-205 6-52 (326)
423 COG1224 TIP49 DNA helicase TIP 91.7 0.36 7.8E-06 48.8 5.9 57 156-212 36-95 (450)
424 smart00072 GuKc Guanylate kina 91.7 0.2 4.4E-06 46.4 4.1 24 182-205 2-25 (184)
425 PRK13768 GTPase; Provisional 91.7 0.15 3.3E-06 50.0 3.4 23 182-204 2-24 (253)
426 cd03266 ABC_NatA_sodium_export 91.7 0.23 5.1E-06 47.2 4.6 34 182-218 31-64 (218)
427 PRK10584 putative ABC transpor 91.7 0.15 3.2E-06 49.0 3.2 24 182-205 36-59 (228)
428 cd03235 ABC_Metallic_Cations A 91.7 0.14 2.9E-06 48.7 2.9 24 182-205 25-48 (213)
429 COG1763 MobB Molybdopterin-gua 91.7 0.13 2.7E-06 46.6 2.5 23 182-204 2-24 (161)
430 cd03292 ABC_FtsE_transporter F 91.7 0.15 3.2E-06 48.4 3.2 24 182-205 27-50 (214)
431 PRK14532 adenylate kinase; Pro 91.6 0.14 3.1E-06 47.4 3.0 20 185-204 3-22 (188)
432 cd03226 ABC_cobalt_CbiO_domain 91.6 0.15 3.2E-06 48.1 3.1 24 182-205 26-49 (205)
433 smart00175 RAB Rab subfamily o 91.6 0.15 3.3E-06 45.5 3.1 21 185-205 3-23 (164)
434 TIGR01026 fliI_yscN ATPase Fli 91.6 0.48 1E-05 50.2 7.1 24 182-205 163-186 (440)
435 cd03301 ABC_MalK_N The N-termi 91.6 0.27 5.8E-06 46.6 4.8 24 182-205 26-49 (213)
436 PRK11629 lolD lipoprotein tran 91.6 0.26 5.7E-06 47.4 4.9 24 182-205 35-58 (233)
437 PRK06835 DNA replication prote 91.6 0.2 4.4E-06 50.9 4.2 50 169-220 170-219 (329)
438 cd03296 ABC_CysA_sulfate_impor 91.5 0.15 3.3E-06 49.3 3.1 24 182-205 28-51 (239)
439 cd03230 ABC_DR_subfamily_A Thi 91.5 0.28 6.1E-06 44.9 4.8 24 182-205 26-49 (173)
440 PF06068 TIP49: TIP49 C-termin 91.5 0.46 9.9E-06 48.6 6.5 58 157-216 22-82 (398)
441 PF03215 Rad17: Rad17 cell cyc 91.5 0.29 6.2E-06 53.0 5.5 59 157-219 17-78 (519)
442 cd00879 Sar1 Sar1 subfamily. 91.5 0.28 6.1E-06 45.3 4.8 24 182-205 19-42 (190)
443 PTZ00494 tuzin-like protein; P 91.5 8 0.00017 40.8 15.4 78 155-240 367-446 (664)
444 PF07693 KAP_NTPase: KAP famil 91.5 0.66 1.4E-05 46.9 7.9 74 165-238 2-82 (325)
445 cd00154 Rab Rab family. Rab G 91.5 0.16 3.6E-06 44.6 3.1 22 185-206 3-24 (159)
446 PLN02165 adenylate isopentenyl 91.5 0.15 3.2E-06 51.6 3.1 24 182-205 43-66 (334)
447 CHL00059 atpA ATP synthase CF1 91.5 0.64 1.4E-05 49.4 7.9 91 182-276 141-244 (485)
448 PRK11124 artP arginine transpo 91.5 0.27 5.9E-06 47.6 4.8 34 182-218 28-61 (242)
449 cd00544 CobU Adenosylcobinamid 91.5 0.61 1.3E-05 42.7 6.9 79 185-274 2-82 (169)
450 cd02029 PRK_like Phosphoribulo 91.4 0.58 1.3E-05 45.9 7.0 80 184-266 1-85 (277)
451 cd03218 ABC_YhbG The ABC trans 91.4 0.26 5.6E-06 47.4 4.6 24 182-205 26-49 (232)
452 COG0703 AroK Shikimate kinase 91.4 0.17 3.6E-06 46.2 3.0 28 183-212 3-30 (172)
453 cd04136 Rap_like Rap-like subf 91.4 0.2 4.3E-06 44.8 3.6 22 184-205 3-24 (163)
454 TIGR02211 LolD_lipo_ex lipopro 91.4 0.16 3.5E-06 48.4 3.2 24 182-205 31-54 (221)
455 TIGR00455 apsK adenylylsulfate 91.4 0.2 4.4E-06 46.3 3.7 25 181-205 17-41 (184)
456 PTZ00088 adenylate kinase 1; P 91.4 0.16 3.4E-06 49.0 3.0 20 185-204 9-28 (229)
457 CHL00060 atpB ATP synthase CF1 91.4 0.35 7.6E-06 51.5 5.8 94 182-276 161-273 (494)
458 PF13245 AAA_19: Part of AAA d 91.4 0.2 4.3E-06 39.3 3.1 23 182-204 10-33 (76)
459 PF01078 Mg_chelatase: Magnesi 91.4 0.38 8.3E-06 45.3 5.5 42 159-204 3-44 (206)
460 PRK05800 cobU adenosylcobinami 91.3 0.82 1.8E-05 41.9 7.6 81 184-274 3-85 (170)
461 KOG2228 Origin recognition com 91.3 0.48 1E-05 47.6 6.3 78 158-238 23-105 (408)
462 cd04124 RabL2 RabL2 subfamily. 91.3 0.17 3.8E-06 45.4 3.1 21 185-205 3-23 (161)
463 cd01864 Rab19 Rab19 subfamily. 91.3 0.2 4.4E-06 45.0 3.6 24 182-205 3-26 (165)
464 PRK15177 Vi polysaccharide exp 91.3 0.16 3.5E-06 48.3 3.0 24 182-205 13-36 (213)
465 cd03257 ABC_NikE_OppD_transpor 91.3 0.16 3.5E-06 48.6 3.1 24 182-205 31-54 (228)
466 cd03258 ABC_MetN_methionine_tr 91.3 0.17 3.6E-06 48.8 3.2 24 182-205 31-54 (233)
467 cd02117 NifH_like This family 91.3 0.16 3.5E-06 48.2 3.0 22 183-204 1-22 (212)
468 PHA02530 pseT polynucleotide k 91.3 0.17 3.8E-06 50.7 3.4 22 183-204 3-24 (300)
469 PRK13538 cytochrome c biogenes 91.3 0.17 3.7E-06 47.7 3.1 24 182-205 27-50 (204)
470 TIGR03608 L_ocin_972_ABC putat 91.3 0.17 3.7E-06 47.6 3.2 24 182-205 24-47 (206)
471 cd01673 dNK Deoxyribonucleosid 91.3 0.15 3.3E-06 47.5 2.7 22 184-205 1-22 (193)
472 cd04177 RSR1 RSR1 subgroup. R 91.3 0.21 4.5E-06 45.2 3.6 22 185-206 4-25 (168)
473 TIGR01189 ccmA heme ABC export 91.3 0.3 6.4E-06 45.8 4.7 24 182-205 26-49 (198)
474 PRK10247 putative ABC transpor 91.2 0.17 3.8E-06 48.5 3.2 24 182-205 33-56 (225)
475 COG4240 Predicted kinase [Gene 91.2 0.65 1.4E-05 44.1 6.7 82 181-266 49-134 (300)
476 PF03029 ATP_bind_1: Conserved 91.2 0.14 3.1E-06 49.6 2.6 32 187-220 1-32 (238)
477 COG0464 SpoVK ATPases of the A 91.2 0.49 1.1E-05 51.1 7.0 100 157-280 240-350 (494)
478 cd03237 ABC_RNaseL_inhibitor_d 91.2 0.17 3.7E-06 49.3 3.1 24 182-205 25-48 (246)
479 PRK14531 adenylate kinase; Pro 91.2 0.19 4E-06 46.6 3.3 21 184-204 4-24 (183)
480 PRK06305 DNA polymerase III su 91.2 0.3 6.6E-06 52.0 5.2 46 158-204 16-61 (451)
481 PRK11248 tauB taurine transpor 91.2 0.17 3.7E-06 49.6 3.2 24 182-205 27-50 (255)
482 cd04123 Rab21 Rab21 subfamily. 91.2 0.18 4E-06 44.7 3.1 21 185-205 3-23 (162)
483 TIGR01184 ntrCD nitrate transp 91.1 0.18 3.9E-06 48.6 3.2 24 182-205 11-34 (230)
484 PRK14250 phosphate ABC transpo 91.1 0.29 6.3E-06 47.5 4.7 24 182-205 29-52 (241)
485 PRK14490 putative bifunctional 91.1 0.28 6E-06 51.0 4.8 31 182-214 5-35 (369)
486 KOG0734 AAA+-type ATPase conta 91.1 0.28 6E-06 52.0 4.6 51 158-208 303-363 (752)
487 PRK07471 DNA polymerase III su 91.1 0.39 8.4E-06 49.7 5.7 47 157-204 17-63 (365)
488 cd01134 V_A-ATPase_A V/A-type 91.1 2.2 4.8E-05 43.6 10.8 39 182-224 157-195 (369)
489 COG4136 ABC-type uncharacteriz 91.1 0.33 7.2E-06 43.1 4.4 36 182-219 28-65 (213)
490 cd03114 ArgK-like The function 91.1 0.16 3.5E-06 45.4 2.6 22 184-205 1-22 (148)
491 cd01860 Rab5_related Rab5-rela 91.0 0.19 4.1E-06 44.9 3.1 23 184-206 3-25 (163)
492 PRK13407 bchI magnesium chelat 91.0 0.27 6E-06 50.1 4.5 46 157-204 6-51 (334)
493 TIGR01650 PD_CobS cobaltochela 91.0 0.65 1.4E-05 47.0 7.1 40 161-204 47-86 (327)
494 TIGR01277 thiQ thiamine ABC tr 91.0 0.31 6.7E-06 46.3 4.6 24 182-205 24-47 (213)
495 PRK09493 glnQ glutamine ABC tr 91.0 0.32 6.9E-06 47.1 4.8 34 182-218 27-60 (240)
496 TIGR02528 EutP ethanolamine ut 91.0 0.18 3.8E-06 44.2 2.7 22 184-205 2-23 (142)
497 TIGR00382 clpX endopeptidase C 91.0 0.35 7.5E-06 50.7 5.3 48 157-204 75-138 (413)
498 cd03219 ABC_Mj1267_LivG_branch 91.0 0.17 3.8E-06 48.7 3.0 23 182-204 26-48 (236)
499 TIGR00017 cmk cytidylate kinas 91.0 0.2 4.3E-06 47.9 3.3 22 183-204 3-24 (217)
500 cd01858 NGP_1 NGP-1. Autoanti 91.0 0.38 8.2E-06 43.2 5.0 44 163-206 82-126 (157)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-65 Score=569.79 Aligned_cols=488 Identities=22% Similarity=0.253 Sum_probs=377.1
Q ss_pred CcchHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHcHhhhHHhhhhcCCCCCCCChhHHHHHHHHHHH
Q 038733 1 MDISFRLFSERLGRVLAGEEVTLPDAAKLPIQNLHAEVEIVTSWLSEFEDDMSWLLLQKIGGGEIDDPDLGNIMDEINCF 80 (519)
Q Consensus 1 ~~a~v~~~~~kl~~~l~~~e~~~~~~~~~~~~~L~~eL~~i~~~l~~a~~~~~~~~~~~~e~~~~~~~~~~~Wl~~lr~~ 80 (519)
|++.++..++|+.+++. +++..+.+.++.+..|+++|..++++++++ +.++.....+..|...++++
T Consensus 1 ~~~~~s~~~~~~~~~l~-~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~------------~a~~~~~~~~~~~~e~~~~~ 67 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLN-RESECLDGKDNYILELKENLKALQSALEDL------------DAKRDDLERRVNWEEDVGDL 67 (889)
T ss_pred CCeEEEEehhhHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHH------------HhhcchHHHHHHHHHHHHHH
Confidence 67788889999999999 999999999999999999999999999999 88888888999999999999
Q ss_pred HHHHHHHHHHHHHhhhccC-CC-Cc-c--ccchhh---hHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCCCC--CC--
Q 038733 81 TYESEMVIDTFINSINEHK-SQ-SS-C--SKDIYD---ALQGLQSRITKIKQRVQQLKHIDPKFMDDFRSVEAE--SG-- 148 (519)
Q Consensus 81 aydaeD~lDe~~~~~~~~~-~g-~~-~--~~~~~~---~~~~i~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~--~~-- 148 (519)
+|++||.++.|.......+ .+ .. + ..+..+ ..+..+..+..+.+++..+.+....++......... ..
T Consensus 68 ~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~ 147 (889)
T KOG4658|consen 68 VYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPR 147 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccch
Confidence 9999999999998876432 22 11 1 222222 126666666667777777766666666443221111 11
Q ss_pred cccCC-CCCCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccC-ccCCCcEEEEEEcCCCCCH
Q 038733 149 YFPAF-SSSKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSY-VKHYFDYLAWIPSPYHYDA 226 (519)
Q Consensus 149 ~~~~~-~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~-v~~~F~~~~wv~vs~~~~~ 226 (519)
...++ +...... ||.+..++++++.|.+++ ..+++|+||||+||||||+.++|+.. ++.+||.++||+||++|+.
T Consensus 148 ~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~ 224 (889)
T KOG4658|consen 148 EKVETRPIQSESD-VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTT 224 (889)
T ss_pred hhcccCCCCcccc-ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccH
Confidence 11122 4444445 999999999999999887 39999999999999999999999987 9999999999999999999
Q ss_pred HHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccCCCC-----------CCceEEE----cCC
Q 038733 227 DQILD-IVTVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWSTDLK-----------DGENIRL----DLV 290 (519)
Q Consensus 227 ~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~~~w-----------~gs~iiv----~~V 290 (519)
.++++ |+..++.... .....+.++++..+.+.|++|||||||||||+..+| +||+|++ .+|
T Consensus 225 ~~iq~~Il~~l~~~~~---~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V 301 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDE---EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEV 301 (889)
T ss_pred HhHHHHHHHHhccCCc---ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhh
Confidence 99999 9999987443 223334579999999999999999999999999998 7899999 333
Q ss_pred -------------------------------------CC----chhHHhhcCCchhHHHHhcccchH-------HHHHHH
Q 038733 291 -------------------------------------PT----GGPLRATYQGWPFLILYHGSISFE-------ENIVEA 322 (519)
Q Consensus 291 -------------------------------------p~----~~~i~~~c~GlPLai~~~g~~L~~-------~~~~~~ 322 (519)
|. |++++++|+|+|||++++|+.|+. +++.+.
T Consensus 302 ~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~ 381 (889)
T KOG4658|consen 302 CGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNV 381 (889)
T ss_pred hhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcc
Confidence 11 999999999999999999999999 444444
Q ss_pred hcC------C------chhhHHHhcCCChhHHHHHhhhccCCCCCccChhHHHHHHHHcCCCCch-----hHHHHHHHHH
Q 038733 323 IET------P------LGLLTVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDN-----SVAIAGKYLE 385 (519)
Q Consensus 323 L~~------~------~~~l~~sy~~L~~~lk~cfly~s~FP~~~~i~~~~Lv~~W~aeg~i~~~-----~e~~~~~~~~ 385 (519)
|.. + .++|++||++||+++|.||+|||+||+||.|+++.|+.+|+||||+.+. ++++|+.|+.
T Consensus 382 l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~ 461 (889)
T KOG4658|consen 382 LKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIE 461 (889)
T ss_pred ccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHH
Confidence 431 1 7999999999998899999999999999999999999999999999874 8999999999
Q ss_pred HHHHccCccccccCCCCceeEEEEChhHHHHHHHHhc-----ccCcEEEec-cC------CCCCCccccceeccccccc-
Q 038733 386 QLINRGFVDTRKRRAGGTINTCSVRGRCRPVLLTVAF-----KAEFIFLLF-MD------SKGPGFRDIATLITGSRME- 452 (519)
Q Consensus 386 ~Lv~rsll~~~~~~~~g~~~~~~mHdlv~d~a~~~~~-----~e~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~- 452 (519)
+|+++||++..... ++..+|+|||+|||+|.++|+ +|+++.... +- .+...+|+.+.........
T Consensus 462 ~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~ 539 (889)
T KOG4658|consen 462 ELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIA 539 (889)
T ss_pred HHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhcc
Confidence 99999999987754 667899999999999999999 777554322 00 1111223332222211100
Q ss_pred ----cccceeeeeeccc----ccc-cccCCCCcccEEEEcCCcCCCCCCcccccccccCcchhHHHHhHhhccCC
Q 038733 453 ----FDDAYALLLTHET----RLE-QQQGGRKRLRRVFADEEVMLPDAAKLPKSRDMVGLDDRMEELLDLLIEGP 518 (519)
Q Consensus 453 ----~~~~~~~~~~~~~----~~~-~~~~~~~~Lr~L~~~~~~~~~~~~~lp~s~~~l~l~~r~~~~~~l~~~~~ 518 (519)
-.+..+++..... .++ ..|..|++||+|.++++.. ..+||++||. +-.|+.|.+.++
T Consensus 540 ~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~---l~~LP~~I~~------Li~LryL~L~~t 605 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS---LSKLPSSIGE------LVHLRYLDLSDT 605 (889)
T ss_pred CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc---cCcCChHHhh------hhhhhcccccCC
Confidence 0112222222211 111 3477899999999988554 6799999973 346666666654
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.5e-37 Score=306.70 Aligned_cols=209 Identities=31% Similarity=0.494 Sum_probs=175.3
Q ss_pred chhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCC
Q 038733 164 LDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSM 242 (519)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~ 242 (519)
|+.++++|.+.|.....+.++|+|+||||+||||||+.++++..++.+|+.++|+.++...+..+++. |+.++......
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999998667799999999999999999999999777999999999999999999999999 99999886431
Q ss_pred CcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccCCCC-----------CCceEEE----cCC-----------------
Q 038733 243 LSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWSTDLK-----------DGENIRL----DLV----------------- 290 (519)
Q Consensus 243 ~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~~~w-----------~gs~iiv----~~V----------------- 290 (519)
. ....+.+.....+++.|.++++||||||||+...| .||+||+ ..|
T Consensus 81 ~--~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 I--SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp S--SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred c--ccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 14467888999999999999999999999998766 6999999 222
Q ss_pred ---------------C--------C-chhHHhhcCCchhHHHHhcccchH-------HHHHHHhc----C----C---ch
Q 038733 291 ---------------P--------T-GGPLRATYQGWPFLILYHGSISFE-------ENIVEAIE----T----P---LG 328 (519)
Q Consensus 291 ---------------p--------~-~~~i~~~c~GlPLai~~~g~~L~~-------~~~~~~L~----~----~---~~ 328 (519)
+ + +++|+++|+|+||||+++|++|+. +++++++. + . ..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 1 789999999999999999999965 44454433 1 1 88
Q ss_pred hhHHHhcCCChhHHHHHhhhccCCCCCccChhHHHHHHHHcCCCCc
Q 038733 329 LLTVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPD 374 (519)
Q Consensus 329 ~l~~sy~~L~~~lk~cfly~s~FP~~~~i~~~~Lv~~W~aeg~i~~ 374 (519)
++.+||+.||+++|+||+|||+||+++.|+++.|+++|+|||||.+
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999999999999999999999999975
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-35 Score=346.75 Aligned_cols=246 Identities=17% Similarity=0.209 Sum_probs=192.3
Q ss_pred CCCCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc---CCC-------
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS---PYH------- 223 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v---s~~------- 223 (519)
+..+..++||++.+++++..+|..+..++++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccc
Confidence 344567899999999999999976666799999999999999999999999 78889998888742 111
Q ss_pred ----CC-HHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccCCCC-----------CCceEE
Q 038733 224 ----YD-ADQILD-IVTVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWSTDLK-----------DGENIR 286 (519)
Q Consensus 224 ----~~-~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~~~w-----------~gs~ii 286 (519)
++ ...++. ++.++...... .... ...+++.|.+||+||||||||+..+| +||+||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~----~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDI----KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCc----ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEE
Confidence 11 123455 66665443321 1111 24578889999999999999987654 699999
Q ss_pred E----cCC---------------------------------CC------chhHHhhcCCchhHHHHhcccchH------H
Q 038733 287 L----DLV---------------------------------PT------GGPLRATYQGWPFLILYHGSISFE------E 317 (519)
Q Consensus 287 v----~~V---------------------------------p~------~~~i~~~c~GlPLai~~~g~~L~~------~ 317 (519)
| .++ |. +++|+++|+|+|||++++|+.|++ +
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~ 408 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHH
Confidence 9 111 21 788999999999999999999998 5
Q ss_pred HHHHHhcC--C---chhhHHHhcCCChh-HHHHHhhhccCCCCCccChhHHHHHHHHcCCCCchhHHHHHHHHHHHHHcc
Q 038733 318 NIVEAIET--P---LGLLTVICCKLPFH-LKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSVAIAGKYLEQLINRG 391 (519)
Q Consensus 318 ~~~~~L~~--~---~~~l~~sy~~L~~~-lk~cfly~s~FP~~~~i~~~~Lv~~W~aeg~i~~~~e~~~~~~~~~Lv~rs 391 (519)
+++++|++ + ..+|++||++|+++ .|.||++||+||.+..++ .+..|++.+... ++..++.|+++|
T Consensus 409 ~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~~L~~ks 479 (1153)
T PLN03210 409 DMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLKNLVDKS 479 (1153)
T ss_pred HHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChHHHHhcC
Confidence 56666764 2 89999999999875 999999999999987553 477888877654 333499999999
Q ss_pred CccccccCCCCceeEEEEChhHHHHHHHHhcccC
Q 038733 392 FVDTRKRRAGGTINTCSVRGRCRPVLLTVAFKAE 425 (519)
Q Consensus 392 ll~~~~~~~~g~~~~~~mHdlv~d~a~~~~~~e~ 425 (519)
|++... ..++|||++|+||+.+++++.
T Consensus 480 Li~~~~-------~~~~MHdLl~~~~r~i~~~~~ 506 (1153)
T PLN03210 480 LIHVRE-------DIVEMHSLLQEMGKEIVRAQS 506 (1153)
T ss_pred CEEEcC-------CeEEhhhHHHHHHHHHHHhhc
Confidence 998753 359999999999999998874
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=1.1e-08 Score=118.27 Aligned_cols=239 Identities=13% Similarity=0.112 Sum_probs=149.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCC-CCCHHHHHH-HHHH
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPY-HYDADQILD-IVTV 235 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~-~~~~~~l~~-il~~ 235 (519)
...++-|.. |.+.|.. ....+++.|.|++|.||||++...... ++.++|+++.. +-+...+.. ++..
T Consensus 13 ~~~~~~R~r----l~~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 13 LHNTVVRER----LLAKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred ccccCcchH----HHHHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHH
Confidence 445666654 4444433 235789999999999999999987752 23688999964 456677777 8887
Q ss_pred hcCCCCC--Cc------CCCCCCHHHHHHHHHHHhc--CCcEEEEecccccCCC-----C---------CCceEEE--cC
Q 038733 236 ILLPFSM--LS------KIKDKDYEMKKIILGEYLM--TKRYLIVLDDVWSTDL-----K---------DGENIRL--DL 289 (519)
Q Consensus 236 l~~~~~~--~~------~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv~~~~~-----w---------~gs~iiv--~~ 289 (519)
+...... ++ .....+...+...+-..+. +.+++|||||+...+. + .+..+|+ +.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 7532110 00 0011223334444444443 6789999999976431 1 3344444 11
Q ss_pred ---C---------------------------------------CC-chhHHhhcCCchhHHHHhcccchH-H----HHHH
Q 038733 290 ---V---------------------------------------PT-GGPLRATYQGWPFLILYHGSISFE-E----NIVE 321 (519)
Q Consensus 290 ---V---------------------------------------p~-~~~i~~~c~GlPLai~~~g~~L~~-~----~~~~ 321 (519)
. |+ ..+|.+.|+|+|+++..++..+.. . ....
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~ 241 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSAR 241 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhH
Confidence 1 01 678999999999999988876654 1 1122
Q ss_pred HhcC----C-chh-hHHHhcCCChhHHHHHhhhccCCCCCccChhHHHHHHHHcCCCCchhHHHHHHHHHHHHHccCccc
Q 038733 322 AIET----P-LGL-LTVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSVAIAGKYLEQLINRGFVDT 395 (519)
Q Consensus 322 ~L~~----~-~~~-l~~sy~~L~~~lk~cfly~s~FP~~~~i~~~~Lv~~W~aeg~i~~~~e~~~~~~~~~Lv~rsll~~ 395 (519)
.+.. . ... ..-.++.||++.+..++..|+++ .++.+.+-.+ .. .+.+...+++|.+.++|..
T Consensus 242 ~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~---~~~~~~~L~~l~~~~l~~~ 309 (903)
T PRK04841 242 RLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG---EENGQMRLEELERQGLFIQ 309 (903)
T ss_pred hhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC---CCcHHHHHHHHHHCCCeeE
Confidence 2321 1 222 33348899999999999999997 3443322221 11 2346889999999999753
Q ss_pred cccCCCCceeEEEEChhHHHHHHHHhc
Q 038733 396 RKRRAGGTINTCSVRGRCRPVLLTVAF 422 (519)
Q Consensus 396 ~~~~~~g~~~~~~mHdlv~d~a~~~~~ 422 (519)
.... ++ ..|+.|++++++.+....
T Consensus 310 ~~~~-~~--~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 310 RMDD-SG--EWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred eecC-CC--CEEehhHHHHHHHHHHHH
Confidence 2211 11 468899999999998763
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.89 E-value=2.9e-07 Score=96.37 Aligned_cols=121 Identities=16% Similarity=0.096 Sum_probs=85.9
Q ss_pred CCCCCCccccchhHHHHHHHHHhcC--CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEG--PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
+...+..++||++++++|...|... ......+-|+|++|+||||+++.++++.......-..++++.....+...++.
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3345678999999999999998542 23345678999999999999999998532222122356666666667788888
Q ss_pred -HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhc--CCcEEEEecccccC
Q 038733 232 -IVTVILLPFSMLSKIKDKDYEMKKIILGEYLM--TKRYLIVLDDVWST 277 (519)
Q Consensus 232 -il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv~~~ 277 (519)
|+.++..... + ....+..++...+.+.+. ++..+||+|+++.-
T Consensus 105 ~i~~~l~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 105 EIARQLFGHPP-P--SSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHHhcCCCC-C--CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 9999875221 1 122356677777777775 45689999999863
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.52 E-value=8.2e-07 Score=91.93 Aligned_cols=120 Identities=18% Similarity=0.016 Sum_probs=82.0
Q ss_pred CCCCccccchhHHHHHHHHHhcC--CCcceEEEeeCCCCCCHHHHHHHHHhccCc-cCCC---cEEEEEEcCCCCCHHHH
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEG--PTQLSVVAIPDSIGLDKTIFTAEAYNSSYV-KHYF---DYLAWIPSPYHYDADQI 229 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v-~~~F---~~~~wv~vs~~~~~~~l 229 (519)
..+..++||++++++|..+|... ......+.|+|++|+|||++++.+++...- .... -..+|++.....+...+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 34458999999999999998752 233457899999999999999999984211 0111 13567777666677888
Q ss_pred HH-HHHHhcC-CCCCCcCCCCCCHHHHHHHHHHHhc--CCcEEEEecccccC
Q 038733 230 LD-IVTVILL-PFSMLSKIKDKDYEMKKIILGEYLM--TKRYLIVLDDVWST 277 (519)
Q Consensus 230 ~~-il~~l~~-~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv~~~ 277 (519)
+. |++++.. ....+ ....+..++...+.+.+. ++.++||||+++.-
T Consensus 92 ~~~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 92 LVELANQLRGSGEEVP--TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHhhcCCCCC--CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 88 9998852 11101 112344556666666663 56789999999765
No 7
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.45 E-value=3e-06 Score=86.44 Aligned_cols=227 Identities=15% Similarity=0.068 Sum_probs=129.0
Q ss_pred CCCccccchhHHHHHHHHHhc---CCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHH
Q 038733 157 KNRNMVGLDDRMEELLDLLIE---GPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIV 233 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il 233 (519)
.-.+++|++..++.+..++.. .......+.++|++|+||||||+.+.+. ....+ .++..+......++..++
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~~~~~~~~l~~~l 97 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGPALEKPGDLAAIL 97 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecccccChHHHHHHH
Confidence 345799999999999888864 2334567889999999999999999994 33222 122222111222232355
Q ss_pred HHhcCCCC-CCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccCCCC----CCceEEE--cC---C-------------
Q 038733 234 TVILLPFS-MLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWSTDLK----DGENIRL--DL---V------------- 290 (519)
Q Consensus 234 ~~l~~~~~-~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~~~w----~gs~iiv--~~---V------------- 290 (519)
..+....- .-++++..+ ....+.+...+.+.+..+++|+..+...+ ++..+|. +. +
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~ 176 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQR 176 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeee
Confidence 55543210 001112121 12344566777778888888886554332 1111111 00 0
Q ss_pred -------------------------CC-chhHHhhcCCchhHHHHhcccchHHHHHHH---hcCC-----chhhHHHhcC
Q 038733 291 -------------------------PT-GGPLRATYQGWPFLILYHGSISFEENIVEA---IETP-----LGLLTVICCK 336 (519)
Q Consensus 291 -------------------------p~-~~~i~~~c~GlPLai~~~g~~L~~~~~~~~---L~~~-----~~~l~~sy~~ 336 (519)
|+ ...|++.|+|.|=.+..+...+..-...+. +..+ ...+...|..
T Consensus 177 l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~~~~~ 256 (328)
T PRK00080 177 LEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGVDELG 256 (328)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcCC
Confidence 12 778999999999543333332221111110 1000 4456677788
Q ss_pred CChhHHHHHh-hhccCCCCCccChhHHHHHHHHcCCCCchhHHHHHHHHH-HHHHccCccccc
Q 038733 337 LPFHLKLCFL-YLSVFPAHLEISTRQLYQLWIAEGFIPDNSVAIAGKYLE-QLINRGFVDTRK 397 (519)
Q Consensus 337 L~~~lk~cfl-y~s~FP~~~~i~~~~Lv~~W~aeg~i~~~~e~~~~~~~~-~Lv~rsll~~~~ 397 (519)
|++..+.-+. ....|+.+ .+..+.+-... | . ..+.++..++ .|++.+|++...
T Consensus 257 l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--~--~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 257 LDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--E--ERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred CCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--C--CcchHHHHhhHHHHHcCCcccCC
Confidence 8888777774 77778766 46665553332 1 1 2455666777 899999997554
No 8
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.42 E-value=3.3e-06 Score=85.18 Aligned_cols=225 Identities=14% Similarity=0.091 Sum_probs=127.0
Q ss_pred CccccchhHHHHHHHHHhcC---CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHH
Q 038733 159 RNMVGLDDRMEELLDLLIEG---PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTV 235 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~ 235 (519)
.+++|++..++.|..++... ......+.++|++|+|||+||+.+.+. ....| ..+..+.......+...+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~l~~~l~~ 78 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGDLAAILTN 78 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchhHHHHHHh
Confidence 46899999999999988642 223556789999999999999999984 33222 12222211222333334444
Q ss_pred hcCCCC-CCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccCCCC----CCceEEE----------------------c
Q 038733 236 ILLPFS-MLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWSTDLK----DGENIRL----------------------D 288 (519)
Q Consensus 236 l~~~~~-~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~~~w----~gs~iiv----------------------~ 288 (519)
+....- .-++++..+ ......+...+.+.+..+|+++..+...| ++..+|. .
T Consensus 79 ~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~ 157 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLE 157 (305)
T ss_pred cccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeC
Confidence 432210 001112222 22345677778888888999987666544 2211111 0
Q ss_pred CC---------------------CC-chhHHhhcCCchhHHHHhcccchH-HHHHHH--hcCC-----chhhHHHhcCCC
Q 038733 289 LV---------------------PT-GGPLRATYQGWPFLILYHGSISFE-ENIVEA--IETP-----LGLLTVICCKLP 338 (519)
Q Consensus 289 ~V---------------------p~-~~~i~~~c~GlPLai~~~g~~L~~-~~~~~~--L~~~-----~~~l~~sy~~L~ 338 (519)
.. |+ ...|++.|+|.|-.+..+...+.. ....+. +..+ ...+..+|..|+
T Consensus 158 ~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~ 237 (305)
T TIGR00635 158 FYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMIDELGLD 237 (305)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCC
Confidence 00 12 667899999999554444333221 000000 0000 233666788898
Q ss_pred hhHHHHHh-hhccCCCCCccChhHHHHHHHHcCCCCchhHHHHHHHHH-HHHHccCccccc
Q 038733 339 FHLKLCFL-YLSVFPAHLEISTRQLYQLWIAEGFIPDNSVAIAGKYLE-QLINRGFVDTRK 397 (519)
Q Consensus 339 ~~lk~cfl-y~s~FP~~~~i~~~~Lv~~W~aeg~i~~~~e~~~~~~~~-~Lv~rsll~~~~ 397 (519)
++.+.-+. .++.|+.+ .+..+.+-... |- ....++..++ .|++++|+....
T Consensus 238 ~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~----~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 238 EIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE----DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred HHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC----CcchHHHhhhHHHHHcCCcccCC
Confidence 88777665 56777544 45544433322 11 2456778788 699999997544
No 9
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.39 E-value=5.8e-07 Score=87.52 Aligned_cols=95 Identities=11% Similarity=-0.076 Sum_probs=61.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCC--CCHHHHHH-HHHHhcCCC-CCCcCCCCCCHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYH--YDADQILD-IVTVILLPF-SMLSKIKDKDYEMKKII 257 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~--~~~~~l~~-il~~l~~~~-~~~~~~~~~~~~~l~~~ 257 (519)
-..++|+|++|+|||||++.+|++.... +|+..+|+.+++. +++.++++ |...+-... +.+......-.......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999975444 8999999997776 88999998 833322211 10000000001111222
Q ss_pred HHHH-hcCCcEEEEecccccC
Q 038733 258 LGEY-LMTKRYLIVLDDVWST 277 (519)
Q Consensus 258 l~~~-L~~kr~LlVLDDv~~~ 277 (519)
...+ -.+++.++++|++..-
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 2222 2579999999998543
No 10
>PTZ00202 tuzin; Provisional
Probab=98.32 E-value=3.5e-05 Score=79.34 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=71.5
Q ss_pred CCCCCCccccchhHHHHHHHHHhcCC-CcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEGP-TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD- 231 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~- 231 (519)
.+.+...|+||+.+...|...|...+ ...+++.|+|++|+|||||++.+..... ..+++.-+. +..++++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHHH
Confidence 34567789999999999999997543 3356999999999999999999987422 113333333 6799999
Q ss_pred HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHh-----c-CCcEEEEe
Q 038733 232 IVTVILLPFSMLSKIKDKDYEMKKIILGEYL-----M-TKRYLIVL 271 (519)
Q Consensus 232 il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L-----~-~kr~LlVL 271 (519)
|+.+|+.+.. ....++...|.+.+ . +++.+||+
T Consensus 329 LL~ALGV~p~-------~~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 329 VVKALGVPNV-------EACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHcCCCCc-------ccHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999997321 22344555555544 2 56666654
No 11
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.31 E-value=7.5e-07 Score=90.75 Aligned_cols=93 Identities=12% Similarity=-0.019 Sum_probs=59.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCC--CHHHHHH-HHHHhcCC-CCCCcCCCCCCHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHY--DADQILD-IVTVILLP-FSMLSKIKDKDYEMKKII 257 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~--~~~~l~~-il~~l~~~-~~~~~~~~~~~~~~l~~~ 257 (519)
-.-.+|+|++|+||||||+.||++.... +|+.++||.+++.. ++.++++ |+..+-.. ...+..... ......-.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~-~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHV-QVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHH-HHHHHHHH
Confidence 4567899999999999999999975554 89999999999887 6777777 65322211 110000000 00011111
Q ss_pred HHHH--hcCCcEEEEeccccc
Q 038733 258 LGEY--LMTKRYLIVLDDVWS 276 (519)
Q Consensus 258 l~~~--L~~kr~LlVLDDv~~ 276 (519)
..++ -.+++.+|++|++..
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHH
Confidence 2222 367999999999854
No 12
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.25 E-value=0.0001 Score=80.90 Aligned_cols=245 Identities=17% Similarity=0.129 Sum_probs=152.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCC-CCHHHHHH-HHH
Q 038733 157 KNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYH-YDADQILD-IVT 234 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~-~~~~~l~~-il~ 234 (519)
...+.|-| .++.+.|... .+.+.+-|..++|.|||||+-.... +. ..=..+.|.+...+ -++..+.. ++.
T Consensus 17 ~~~~~v~R----~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 17 RPDNYVVR----PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred Cccccccc----HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHH
Confidence 34455555 4555656554 2589999999999999999988765 11 12235899998754 67788888 888
Q ss_pred HhcCCCCC-Cc-------CCCCCCHHHHHHHHHHHhcC--CcEEEEecccccCCCC--------------CCceEEE--c
Q 038733 235 VILLPFSM-LS-------KIKDKDYEMKKIILGEYLMT--KRYLIVLDDVWSTDLK--------------DGENIRL--D 288 (519)
Q Consensus 235 ~l~~~~~~-~~-------~~~~~~~~~l~~~l~~~L~~--kr~LlVLDDv~~~~~w--------------~gs~iiv--~ 288 (519)
.++.-.+. .+ .....+...+...+..-+.. +..++||||..-..+= .+-.+|| +
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 88742210 00 01122344455555554443 6889999997644321 4545555 2
Q ss_pred CC-----------------------------------------CC--chhHHhhcCCchhHHHHhcccchH----HHHHH
Q 038733 289 LV-----------------------------------------PT--GGPLRATYQGWPFLILYHGSISFE----ENIVE 321 (519)
Q Consensus 289 ~V-----------------------------------------p~--~~~i~~~c~GlPLai~~~g~~L~~----~~~~~ 321 (519)
+- ++ .+.+.+..+|.+-|+..++=.++. +....
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 11 01 555666666777666666655552 12222
Q ss_pred HhcC-C----chhhHHHhcCCChhHHHHHhhhccCCCCCccChhHHHHHHHHcCCCCchhHHHHHHHHHHHHHccCcccc
Q 038733 322 AIET-P----LGLLTVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSVAIAGKYLEQLINRGFVDTR 396 (519)
Q Consensus 322 ~L~~-~----~~~l~~sy~~L~~~lk~cfly~s~FP~~~~i~~~~Lv~~W~aeg~i~~~~e~~~~~~~~~Lv~rsll~~~ 396 (519)
.|.. . .-...--++.||+++|..++-||+++.- . ..|+..-.. ++-+...+++|-+++|+-..
T Consensus 249 ~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~Ltg--------~~ng~amLe~L~~~gLFl~~ 316 (894)
T COG2909 249 GLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNALTG--------EENGQAMLEELERRGLFLQR 316 (894)
T ss_pred hccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHHhc--------CCcHHHHHHHHHhCCCceee
Confidence 2221 0 1223334688999999999999999752 2 233333222 56688899999999998643
Q ss_pred ccCCCCceeEEEEChhHHHHHHHHhccc
Q 038733 397 KRRAGGTINTCSVRGRCRPVLLTVAFKA 424 (519)
Q Consensus 397 ~~~~~g~~~~~~mHdlv~d~a~~~~~~e 424 (519)
-.+ ....|+.|.++.||.+.....+
T Consensus 317 Ldd---~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 317 LDD---EGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred ecC---CCceeehhHHHHHHHHhhhccc
Confidence 322 2268999999999999877663
No 13
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.20 E-value=2.5e-06 Score=78.96 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=33.6
Q ss_pred ccccchhHHHHHHHHHh-cCCCcceEEEeeCCCCCCHHHHHHHHHhccCcc
Q 038733 160 NMVGLDDRMEELLDLLI-EGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVK 209 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~ 209 (519)
.|+||+++++++...|. ......+.+.|+|.+|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999994 234457899999999999999999988853333
No 14
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.19 E-value=2.2e-06 Score=74.77 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=64.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCc---cCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYV---KHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIKDKDYEMKKII 257 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v---~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~ 257 (519)
-+.+.|+|.+|+|||++++.+.++..- ...-...+|+..+...+...+.. |+..++.... ...+...+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-----SRQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-----STS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-----ccCCHHHHHHH
Confidence 568899999999999999999884211 00123467999988889999999 9999997553 23467777788
Q ss_pred HHHHhcCCcE-EEEecccccC
Q 038733 258 LGEYLMTKRY-LIVLDDVWST 277 (519)
Q Consensus 258 l~~~L~~kr~-LlVLDDv~~~ 277 (519)
+.+.+...+. +||+|++..-
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHH
T ss_pred HHHHHHhcCCeEEEEeChHhc
Confidence 8888876555 9999998653
No 15
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.18 E-value=2.4e-05 Score=77.25 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=57.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIKDKDYEMKKIILGE 260 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 260 (519)
..++.|+|++|+|||||++.+++..... .+ ..+|+. ....+..+++. |+..++.... ..+.......+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~------~~~~~~~~~~l~~ 113 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLV-NTRVDAEDLLRMVAADFGLETE------GRDKAALLRELED 113 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeee-CCCCCHHHHHHHHHHHcCCCCC------CCCHHHHHHHHHH
Confidence 5688999999999999999999853321 11 223433 33467788888 8888765421 1222333333333
Q ss_pred Hh-----cCCcEEEEecccccCC
Q 038733 261 YL-----MTKRYLIVLDDVWSTD 278 (519)
Q Consensus 261 ~L-----~~kr~LlVLDDv~~~~ 278 (519)
.+ .+++++||+||++...
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLT 136 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCC
Confidence 22 6788999999998764
No 16
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.06 E-value=1.4e-05 Score=81.88 Aligned_cols=94 Identities=10% Similarity=-0.090 Sum_probs=61.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCC--CCHHHHHH-HHHHhcCCCC-CCcCCCCCCHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYH--YDADQILD-IVTVILLPFS-MLSKIKDKDYEMKKII 257 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~--~~~~~l~~-il~~l~~~~~-~~~~~~~~~~~~l~~~ 257 (519)
-..++|+|++|+|||||++.+++..... +|+..+||.+++. .++.++++ |+..+-.... .+......-.....+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 4678999999999999999999964333 7999999999866 78889998 8654433211 0110000000111111
Q ss_pred HHHH-hcCCcEEEEeccccc
Q 038733 258 LGEY-LMTKRYLIVLDDVWS 276 (519)
Q Consensus 258 l~~~-L~~kr~LlVLDDv~~ 276 (519)
.... -.+++.+|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 2222 257999999999854
No 17
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.04 E-value=2.8e-05 Score=68.19 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=41.6
Q ss_pred ccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCC
Q 038733 162 VGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPY 222 (519)
Q Consensus 162 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~ 222 (519)
+|++..++.+...+.... .+.+.|+|.+|+||||+++.+++... ..-...+++..+.
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~ 57 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASD 57 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhh
Confidence 477888888888887643 56888999999999999999998432 2123355665544
No 18
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.91 E-value=1.6e-05 Score=76.14 Aligned_cols=43 Identities=28% Similarity=0.395 Sum_probs=35.9
Q ss_pred cccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 161 MVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
|+||++++++|.+++..+. .+.+.|+|+.|+|||+|++.+.+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 6899999999999998754 678899999999999999999984
No 19
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00018 Score=74.12 Aligned_cols=114 Identities=15% Similarity=0.075 Sum_probs=84.8
Q ss_pred CCCccccchhHHHHHHHHHhcC--CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcE--EEEEEcCCCCCHHHHHH-
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG--PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDY--LAWIPSPYHYDADQILD- 231 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~--~~wv~vs~~~~~~~l~~- 231 (519)
.+..+.+|+.+++++...|..- .....-+-|+|..|+|||+.++.+.. ++...... .+.|+.-......+++.
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3444999999999999988652 22233388899999999999999998 44443221 67888888888999999
Q ss_pred HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhc--CCcEEEEecccccC
Q 038733 232 IVTVILLPFSMLSKIKDKDYEMKKIILGEYLM--TKRYLIVLDDVWST 277 (519)
Q Consensus 232 il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv~~~ 277 (519)
|+++++... . ..+...+....+.+.+. ++.+++|||++..-
T Consensus 93 i~~~~~~~p---~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 93 ILNKLGKVP---L--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHHHcCCCC---C--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 999997311 1 23456677777777774 48999999999754
No 20
>PF05729 NACHT: NACHT domain
Probab=97.72 E-value=9.5e-05 Score=66.86 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=51.4
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCC----CcEEEEEEcCCCCCHH---HHHH-HHHHhcCCCCCCcCCCCCCHHHH
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHY----FDYLAWIPSPYHYDAD---QILD-IVTVILLPFSMLSKIKDKDYEMK 254 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~----F~~~~wv~vs~~~~~~---~l~~-il~~l~~~~~~~~~~~~~~~~~l 254 (519)
+++.|.|.+|+||||+++.++..-..... +...+|.+........ .+.. |......... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--------~~~~- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA--------PIEE- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh--------hhHH-
Confidence 57899999999999999998875333222 4566677765443322 3444 4444432211 1111
Q ss_pred HHHHHHH-hcCCcEEEEecccccCC
Q 038733 255 KIILGEY-LMTKRYLIVLDDVWSTD 278 (519)
Q Consensus 255 ~~~l~~~-L~~kr~LlVLDDv~~~~ 278 (519)
.+... -..++++||+|++.+..
T Consensus 72 --~~~~~~~~~~~~llilDglDE~~ 94 (166)
T PF05729_consen 72 --LLQELLEKNKRVLLILDGLDELE 94 (166)
T ss_pred --HHHHHHHcCCceEEEEechHhcc
Confidence 22222 25789999999987653
No 21
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.68 E-value=0.00011 Score=74.63 Aligned_cols=226 Identities=15% Similarity=0.090 Sum_probs=149.6
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-H-HHHhcCCCCCCcCCCCCCHHHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-I-VTVILLPFSMLSKIKDKDYEMKKIIL 258 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-i-l~~l~~~~~~~~~~~~~~~~~l~~~l 258 (519)
..+-+.++|.|||||||++-.+.. +..-|..-.|..--.++.-..+.- + ...+..... +-+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~--------~g~~~~~~~ 81 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ--------PGDSAVDTL 81 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc--------cchHHHHHH
Confidence 478999999999999999998887 666786655554444444444444 4 444555332 224455577
Q ss_pred HHHhcCCcEEEEecccccCC------CC--------------CCceEEE-cCC---------------------------
Q 038733 259 GEYLMTKRYLIVLDDVWSTD------LK--------------DGENIRL-DLV--------------------------- 290 (519)
Q Consensus 259 ~~~L~~kr~LlVLDDv~~~~------~w--------------~gs~iiv-~~V--------------------------- 290 (519)
..++.++|.++|+||..+-. .| ...-+.+ -++
T Consensus 82 ~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 82 VRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 77888999999999986532 12 0111111 111
Q ss_pred -----CC---chhHHhhcCCchhHHHHhcccchH---HHHHHHhc-------C------C-----chhhHHHhcCCChhH
Q 038733 291 -----PT---GGPLRATYQGWPFLILYHGSISFE---ENIVEAIE-------T------P-----LGLLTVICCKLPFHL 341 (519)
Q Consensus 291 -----p~---~~~i~~~c~GlPLai~~~g~~L~~---~~~~~~L~-------~------~-----~~~l~~sy~~L~~~l 341 (519)
++ ..+|.++..|.|++|...++..+. ..+.+.|. + . .+.+.+||.-|....
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 11 788999999999999999999888 55555543 1 0 889999999999999
Q ss_pred HHHHhhhccCCCCCccChhHHHHHHHHcCCCCchhHHHHHHHHHHHHHccCccccccCCCCceeEEEEChhHHHHHHHHh
Q 038733 342 KLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSVAIAGKYLEQLINRGFVDTRKRRAGGTINTCSVRGRCRPVLLTVA 421 (519)
Q Consensus 342 k~cfly~s~FP~~~~i~~~~Lv~~W~aeg~i~~~~e~~~~~~~~~Lv~rsll~~~~~~~~g~~~~~~mHdlv~d~a~~~~ 421 (519)
+--|.-++.|...+... ...|.+-|=....+.-....-+..|++.|++....... . ..|+.-+-+|.|+..+.
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~--~-a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLG--R-ARYRLLETGRRYALAEL 314 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhh--H-HHHHHHHHHHHHHHHHH
Confidence 99999999998877654 33455554332112334445566788888887654211 1 34666667777776665
Q ss_pred ccc
Q 038733 422 FKA 424 (519)
Q Consensus 422 ~~e 424 (519)
.+.
T Consensus 315 ~r~ 317 (414)
T COG3903 315 HRS 317 (414)
T ss_pred Hhh
Confidence 543
No 22
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.62 E-value=0.00028 Score=70.95 Aligned_cols=118 Identities=15% Similarity=0.176 Sum_probs=82.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCcc-eEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHH
Q 038733 157 KNRNMVGLDDRMEELLDLLIEGPTQL-SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVT 234 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~ 234 (519)
.++.+.+|+..+..+..++.+.+..+ +.|-|.|-.|.|||.+.+.+++.. .. ..+|++.-+.++..-++. |+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHHHH
Confidence 45678899999999999998876544 445889999999999999999954 22 348999999999999999 999
Q ss_pred HhcCCCCCCcCCCC--CCHHHHHHHHHH--Hhc--CCcEEEEecccccCCC
Q 038733 235 VILLPFSMLSKIKD--KDYEMKKIILGE--YLM--TKRYLIVLDDVWSTDL 279 (519)
Q Consensus 235 ~l~~~~~~~~~~~~--~~~~~l~~~l~~--~L~--~kr~LlVLDDv~~~~~ 279 (519)
+.......+..... .+..+....+.. ... ++.++||||++..-.+
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD 129 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD 129 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc
Confidence 98632211111111 122222333333 112 4689999999976543
No 23
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.60 E-value=0.00047 Score=76.58 Aligned_cols=117 Identities=9% Similarity=-0.005 Sum_probs=77.8
Q ss_pred CCCccccchhHHHHHHHHHhcC---CCcceEEEeeCCCCCCHHHHHHHHHhccCc---cCCCc--EEEEEEcCCCCCHHH
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG---PTQLSVVAIPDSIGLDKTIFTAEAYNSSYV---KHYFD--YLAWIPSPYHYDADQ 228 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v---~~~F~--~~~wv~vs~~~~~~~ 228 (519)
.+..+.||++++++|...|... .....++-|.|++|.|||+.++.|.+...- +...+ ..++|....-.+...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 4467899999999999988652 223467789999999999999999874211 11222 245666666667888
Q ss_pred HHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhc---CCcEEEEecccccC
Q 038733 229 ILD-IVTVILLPFSMLSKIKDKDYEMKKIILGEYLM---TKRYLIVLDDVWST 277 (519)
Q Consensus 229 l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~---~kr~LlVLDDv~~~ 277 (519)
+.. |..++....+ . ...........+...+. ....+||||+|..-
T Consensus 833 IYqvI~qqL~g~~P--~--~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 833 AYQVLYKQLFNKKP--P--NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHHcCCCC--C--ccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 888 9988854331 1 22233445555555542 22458999999754
No 24
>PF13173 AAA_14: AAA domain
Probab=97.56 E-value=0.00012 Score=63.98 Aligned_cols=75 Identities=12% Similarity=0.063 Sum_probs=47.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGEY 261 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 261 (519)
-+++.|.|+.|+|||||++.++.+.. .-...++++..+...... .+.+ ..+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~--------------------~~~~-~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRL--------------------ADPD-LLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHH--------------------hhhh-hHHHHHHh
Confidence 46899999999999999999887432 223455665443211000 0001 33344444
Q ss_pred hcCCcEEEEecccccCCCC
Q 038733 262 LMTKRYLIVLDDVWSTDLK 280 (519)
Q Consensus 262 L~~kr~LlVLDDv~~~~~w 280 (519)
...++.++++|++.....|
T Consensus 58 ~~~~~~~i~iDEiq~~~~~ 76 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQYLPDW 76 (128)
T ss_pred hccCCcEEEEehhhhhccH
Confidence 4457889999999988887
No 25
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.50 E-value=0.00019 Score=75.68 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=36.2
Q ss_pred CCccccchhHHHH---HHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEE---LLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-+++||.+..+.. +.+++.... ...+.++|++|+||||||+.+.+.
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 3468888877655 777776543 567788999999999999999984
No 26
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.50 E-value=0.00043 Score=69.11 Aligned_cols=92 Identities=13% Similarity=0.177 Sum_probs=55.3
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHH
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVT 234 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~ 234 (519)
+.+.+++|-+.- |.+++..+ .+..+..||++|+||||||+.+.+..+-.. ..||..|..-....=.+ |++
T Consensus 141 vGQ~hlv~q~gl---lrs~ieq~--~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 141 VGQSHLVGQDGL---LRSLIEQN--RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred cchhhhcCcchH---HHHHHHcC--CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence 344455555333 33333333 478888999999999999999999654444 34566654433222223 444
Q ss_pred HhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEeccccc
Q 038733 235 VILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~ 276 (519)
+... ...+.++|..|.+|.|..
T Consensus 212 ~aq~--------------------~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 212 QAQN--------------------EKSLTKRKTILFIDEIHR 233 (554)
T ss_pred HHHH--------------------HHhhhcceeEEEeHHhhh
Confidence 3321 112456888899999864
No 27
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.49 E-value=0.00033 Score=73.16 Aligned_cols=109 Identities=9% Similarity=0.102 Sum_probs=73.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVI 236 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l 236 (519)
..++++.+...+.+...|... +.|.+.|++|+|||++|+.+++.......|+.+.||++++.++..++.. +.-.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~- 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN- 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-
Confidence 346888999999999999853 4677899999999999999998654455788889999999888777654 3110
Q ss_pred cCCCCCCcCCCCCCHHHHHHHHHHHhc--CCcEEEEecccccCC
Q 038733 237 LLPFSMLSKIKDKDYEMKKIILGEYLM--TKRYLIVLDDVWSTD 278 (519)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv~~~~ 278 (519)
+. ... ....-..+.+...-. +++++||+|++...+
T Consensus 249 ~v------gy~-~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 249 GV------GFR-RKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred CC------CeE-ecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 00 000 001112222222222 468999999996654
No 28
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.00063 Score=69.05 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=59.8
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCC-CHHHHHHHH
Q 038733 155 SSKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHY-DADQILDIV 233 (519)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~-~~~~l~~il 233 (519)
.+.+.+++|-+..+.+++ ..+ .+...-.||++|+||||||+.+.. .....|. .+|... .++++..++
T Consensus 26 ~vGQ~HLlg~~~~lrr~v---~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 26 VVGQEHLLGEGKPLRRAV---EAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLREII 93 (436)
T ss_pred hcChHhhhCCCchHHHHH---hcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHHHHH
Confidence 344455566555544444 333 467777899999999999999998 4555553 223222 222222222
Q ss_pred HHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccCC----C-C-----CCceEEE
Q 038733 234 TVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWSTD----L-K-----DGENIRL 287 (519)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~~----~-w-----~gs~iiv 287 (519)
+... +....+++.+|.+|.|..-+ + + +|.-|+|
T Consensus 94 e~a~---------------------~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilI 136 (436)
T COG2256 94 EEAR---------------------KNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILI 136 (436)
T ss_pred HHHH---------------------HHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEE
Confidence 2211 22234789999999997543 1 1 7888888
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.37 E-value=0.0016 Score=61.82 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=37.6
Q ss_pred CCCCccccchhHHHHHHHHHhc---CCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC
Q 038733 156 SKNRNMVGLDDRMEELLDLLIE---GPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF 212 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F 212 (519)
..-.++||.+.-++.+.-++.. ....+.-+-.||++|+||||||+.+.+ +....|
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 3456899999988887665542 344577888999999999999999999 455454
No 30
>PRK08118 topology modulation protein; Reviewed
Probab=97.34 E-value=0.00011 Score=67.35 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=28.3
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCcc-CCCcEEEE
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVK-HYFDYLAW 217 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~-~~F~~~~w 217 (519)
+-|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999965444 45777775
No 31
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.28 E-value=0.00046 Score=66.53 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=30.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v 220 (519)
-.++|+|..|.|||||...+.. .....|+++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3678999999999999999987 57778988777754
No 32
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.25 E-value=0.0053 Score=70.28 Aligned_cols=119 Identities=14% Similarity=0.070 Sum_probs=75.4
Q ss_pred chhHHhhcCCchhHHHHhcccchHHHHH-------------HHhcC-C--c---hhhHHHhcCCChhHHHHHhhhccCCC
Q 038733 293 GGPLRATYQGWPFLILYHGSISFEENIV-------------EAIET-P--L---GLLTVICCKLPFHLKLCFLYLSVFPA 353 (519)
Q Consensus 293 ~~~i~~~c~GlPLai~~~g~~L~~~~~~-------------~~L~~-~--~---~~l~~sy~~L~~~lk~cfly~s~FP~ 353 (519)
...|++|..|.|+-+.-+-..|..+.++ .++.. + . +.+..-.+.||...+...-.-|++
T Consensus 243 ~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~i-- 320 (849)
T COG3899 243 LELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAACI-- 320 (849)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Confidence 8889999999999887777666652111 11222 1 2 247888999999999999888888
Q ss_pred CCccChhHHHHHHHHcCCCCchhHHHHHHHHHHHHHccCccccccCCCCceeEE----EEChhHHHHHHH
Q 038733 354 HLEISTRQLYQLWIAEGFIPDNSVAIAGKYLEQLINRGFVDTRKRRAGGTINTC----SVRGRCRPVLLT 419 (519)
Q Consensus 354 ~~~i~~~~Lv~~W~aeg~i~~~~e~~~~~~~~~Lv~rsll~~~~~~~~g~~~~~----~mHdlv~d~a~~ 419 (519)
|-.|+.+.|-..|-.. ....+...++.|....++-..+....+..... -.||.+++.|-.
T Consensus 321 G~~F~l~~La~l~~~~------~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~ 384 (849)
T COG3899 321 GNRFDLDTLAALAEDS------PALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYN 384 (849)
T ss_pred CccCCHHHHHHHHhhc------hHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhc
Confidence 4567788888777431 25666666777766555543333222221111 356666666644
No 33
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.16 E-value=0.0083 Score=66.33 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=71.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCc---EEEEEEcCC---CCCHHHHHH
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFD---YLAWIPSPY---HYDADQILD 231 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~---~~~wv~vs~---~~~~~~l~~ 231 (519)
-++++|.+..+..+...+.... ...+.|+|++|+||||||+.+++.......+. ..-|+.+.. ..+...+..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 3468999999999888875433 56799999999999999999998644333331 234555432 122222222
Q ss_pred -HH---------------HHhcCCCC-------------CCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccC
Q 038733 232 -IV---------------TVILLPFS-------------MLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWST 277 (519)
Q Consensus 232 -il---------------~~l~~~~~-------------~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~ 277 (519)
++ ...+.... .-++....+ ...+..+.+.+++++++++.|+.|..
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccC
Confidence 21 11111000 011222233 34577888999999999997777654
No 34
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=0.0042 Score=64.25 Aligned_cols=129 Identities=13% Similarity=0.071 Sum_probs=86.2
Q ss_pred CCCCCCccccchhHHHHHHHHHhcC--CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEG--PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
....+..++||+.++..+.+|+... ......+-|.|.+|.|||.+...++.+..-...=.+++.++-..--....++.
T Consensus 145 ~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 145 NTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred hcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3456778999999999999999763 34566788899999999999999998633222212445554443345566777
Q ss_pred -HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCC--cEEEEecccccC-----------CCC---CCceEEE
Q 038733 232 -IVTVILLPFSMLSKIKDKDYEMKKIILGEYLMTK--RYLIVLDDVWST-----------DLK---DGENIRL 287 (519)
Q Consensus 232 -il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVLDDv~~~-----------~~w---~gs~iiv 287 (519)
|...+..... ......+..+.+.+..... -+|+|||.+..- .+| ++|++|+
T Consensus 225 kI~~~~~q~~~-----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iL 292 (529)
T KOG2227|consen 225 KIFSSLLQDLV-----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIIL 292 (529)
T ss_pred HHHHHHHHHhc-----CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeee
Confidence 7777732211 1112255566666666553 589999998643 246 7888877
No 35
>PRK04195 replication factor C large subunit; Provisional
Probab=97.10 E-value=0.0016 Score=70.04 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=40.6
Q ss_pred CCccccchhHHHHHHHHHhcC--CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEG--PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..++.+.+|+..- ....+.+-|+|++|+||||+|+.+.+.
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999752 223678999999999999999999994
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=97.09 E-value=0.0006 Score=65.87 Aligned_cols=37 Identities=14% Similarity=-0.020 Sum_probs=27.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v 220 (519)
.+.+.++|+.|+|||+|++.+++. .........|+++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeH
Confidence 467899999999999999999984 3222334456655
No 37
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.06 E-value=0.0025 Score=55.05 Aligned_cols=88 Identities=13% Similarity=0.019 Sum_probs=46.9
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGEYL 262 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L 262 (519)
..+.|+|++|+||||+++.+... ........+.+..+................. .............+.+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLLLIIVGG------KKASGSGELRLRLALALA 74 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHHhhhhhc------cCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999884 3333223444444332221111101000000 001122333344445555
Q ss_pred cCCc-EEEEecccccCC
Q 038733 263 MTKR-YLIVLDDVWSTD 278 (519)
Q Consensus 263 ~~kr-~LlVLDDv~~~~ 278 (519)
+..+ .+|++|++....
T Consensus 75 ~~~~~~viiiDei~~~~ 91 (148)
T smart00382 75 RKLKPDVLILDEITSLL 91 (148)
T ss_pred HhcCCCEEEEECCcccC
Confidence 4444 899999997664
No 38
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.06 E-value=0.0014 Score=62.79 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc
Q 038733 164 LDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220 (519)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v 220 (519)
.+..++.+.+++... ....+.|+|..|+|||+||+.+++. ........++++.
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~ 74 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPL 74 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeH
Confidence 455677777776533 3668889999999999999999984 2222333455543
No 39
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.05 E-value=0.0012 Score=73.83 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=37.3
Q ss_pred CCccccchhHHH---HHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC
Q 038733 158 NRNMVGLDDRME---ELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF 212 (519)
Q Consensus 158 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F 212 (519)
-++++|.+..+. .+.+.+..+. ...+-++|++|+||||||+.+++ .....|
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 346889887774 4555555443 56678999999999999999998 444444
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.04 E-value=0.0013 Score=56.97 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=19.3
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|.|+|+.|+||||+|+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999995
No 41
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.04 E-value=0.0067 Score=60.11 Aligned_cols=116 Identities=11% Similarity=0.140 Sum_probs=76.5
Q ss_pred CCCccccch---hHHHHHHHHHhcC-CCcceEEEeeCCCCCCHHHHHHHHHhccCccC--CC--cEEEEEEcCCCCCHHH
Q 038733 157 KNRNMVGLD---DRMEELLDLLIEG-PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKH--YF--DYLAWIPSPYHYDADQ 228 (519)
Q Consensus 157 ~~~~~vGr~---~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~--~F--~~~~wv~vs~~~~~~~ 228 (519)
..+..+|-. +.++++.++|... ....+-+.|||.+|.|||++++......-... .- -.++.|.++..++...
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 345566643 3445555555543 23456789999999999999998876421111 10 1467788899999999
Q ss_pred HHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcC-CcEEEEecccccC
Q 038733 229 ILD-IVTVILLPFSMLSKIKDKDYEMKKIILGEYLMT-KRYLIVLDDVWST 277 (519)
Q Consensus 229 l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVLDDv~~~ 277 (519)
+.. |+.+++.... .......+.......++. +--+||+|.+.+.
T Consensus 112 ~Y~~IL~~lgaP~~-----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 112 FYSAILEALGAPYR-----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred HHHHHHHHhCcccC-----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 999 9999998654 223445555555556654 3447888988553
No 42
>PRK08116 hypothetical protein; Validated
Probab=96.99 E-value=0.0027 Score=62.78 Aligned_cols=78 Identities=19% Similarity=0.125 Sum_probs=46.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHHH
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIKDKDYEMKKIILGEY 261 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 261 (519)
..+.++|..|+|||.||.++++. +...--.+++++ ..+++. |........ ..+... +.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~-------~~~~~~----~~~~ 175 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG-------KEDENE----IIRS 175 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc-------cccHHH----HHHH
Confidence 45789999999999999999994 333333455655 344555 554433211 112222 2333
Q ss_pred hcCCcEEEEecccc--cCCCC
Q 038733 262 LMTKRYLIVLDDVW--STDLK 280 (519)
Q Consensus 262 L~~kr~LlVLDDv~--~~~~w 280 (519)
+.+-. ||||||+- ...+|
T Consensus 176 l~~~d-lLviDDlg~e~~t~~ 195 (268)
T PRK08116 176 LVNAD-LLILDDLGAERDTEW 195 (268)
T ss_pred hcCCC-EEEEecccCCCCCHH
Confidence 44334 89999994 34456
No 43
>PRK10536 hypothetical protein; Provisional
Probab=96.97 E-value=0.0077 Score=58.56 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=42.6
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEE
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAW 217 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~w 217 (519)
.+...+.++......++.+|.+. .++.+.|..|+|||+||.++..+.-....|+..+-
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34456778889999999988753 49999999999999999987774322344554443
No 44
>PRK07261 topology modulation protein; Provisional
Probab=96.93 E-value=0.0025 Score=58.56 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=25.2
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCcc-CCCcEEEEE
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVK-HYFDYLAWI 218 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~-~~F~~~~wv 218 (519)
.|.|+|++|+||||||+.+.....+. -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 48899999999999999987642221 234555563
No 45
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.87 E-value=0.0024 Score=62.44 Aligned_cols=106 Identities=21% Similarity=0.187 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHcHhhhHHhhhhcCCCCCCCChhHHHHHHHHHHHHH
Q 038733 3 ISFRLFSERLGRVLAGEEVTLPDAAKLPIQNLHAEVEIVTSWLSEFEDDMSWLLLQKIGGGEIDDPDLGNIMDEINCFTY 82 (519)
Q Consensus 3 a~v~~~~~kl~~~l~~~e~~~~~~~~~~~~~L~~eL~~i~~~l~~a~~~~~~~~~~~~e~~~~~~~~~~~Wl~~lr~~ay 82 (519)
+.|.+++++|.++.. .....+.-++.+++-++.+|+.+|.||+..- +...........+..++...||
T Consensus 296 GyVdFlL~NLkdfq~-rysdSlaflKnQiqvIQ~elesLqpFLk~V~-----------ee~~nkh~~~ed~a~~ii~kAy 363 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQG-RYSDSLAFLKNQIQVIQTELESLQPFLKHVV-----------EEPHNKHDTNEDCATQIIRKAY 363 (402)
T ss_pred cHHHHHHhhHHHHhc-cccchHHHHHHHHHHHHHHHHHhhHHHHHHH-----------hccchhhhhhhhHHHHHHHHHh
Confidence 568899999999998 7888889999999999999999999999981 3333333448899999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCccccchhhhHHHHHHHHHHHHHHHH
Q 038733 83 ESEMVIDTFINSINEHKSQSSCSKDIYDALQGLQSRITKIKQRVQ 127 (519)
Q Consensus 83 daeD~lDe~~~~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~l~ 127 (519)
++|.++|-+....... +|.. +.+..+..+|+.++++++
T Consensus 364 evEYVVDaCi~k~~P~----Wcl~---~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 364 EVEYVVDACISKSVPH----WCLE---RWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred heeeeeehhhcCCCcH----HHHH---HHHHHHHHHHHHHHHHhc
Confidence 9999999986643211 1222 233778888888888765
No 46
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.86 E-value=0.00096 Score=76.37 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++||+++++.+++.|.... ..-+.++|.+|+|||++|+.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998754 223458999999999999988774
No 47
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.86 E-value=0.0098 Score=57.04 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=61.7
Q ss_pred HHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC------cEEEEEEcCCCCCHHHHHHHHHHhcCCCC-CCcC
Q 038733 173 DLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF------DYLAWIPSPYHYDADQILDIVTVILLPFS-MLSK 245 (519)
Q Consensus 173 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F------~~~~wv~vs~~~~~~~l~~il~~l~~~~~-~~~~ 245 (519)
++|..+-..-.++.|+|.+|+|||+||..+... ....- ..++|+.....++...+.++......... ..+.
T Consensus 10 ~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~ 87 (226)
T cd01393 10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDN 87 (226)
T ss_pred HHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhcc
Confidence 333333335679999999999999999888653 22222 45789998888888777665554332110 0000
Q ss_pred ---CCCCCHHHHHHHHHHHhc---C-CcEEEEecccc
Q 038733 246 ---IKDKDYEMKKIILGEYLM---T-KRYLIVLDDVW 275 (519)
Q Consensus 246 ---~~~~~~~~l~~~l~~~L~---~-kr~LlVLDDv~ 275 (519)
....+.+++...+..... . +--|+|+|.+.
T Consensus 88 i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 88 IYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 112345666666665543 3 44589999874
No 48
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.85 E-value=0.0031 Score=64.54 Aligned_cols=105 Identities=11% Similarity=-0.028 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccC-CCcE-EEEEEcCCC-CCHHHHHH-HHHHhcCCCCCC
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKH-YFDY-LAWIPSPYH-YDADQILD-IVTVILLPFSML 243 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~-~F~~-~~wv~vs~~-~~~~~l~~-il~~l~~~~~~~ 243 (519)
..++++.+..-.. -.-+.|+|..|+|||||++.+.+. +.. +=+. .+|+.+.+. -.+.++.+ +...+.......
T Consensus 120 ~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 120 SMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 3457777764322 345689999999999999998873 322 2234 467777654 56778888 877666532100
Q ss_pred cCCCCCCHHHHHHHHHHHh--cCCcEEEEecccc
Q 038733 244 SKIKDKDYEMKKIILGEYL--MTKRYLIVLDDVW 275 (519)
Q Consensus 244 ~~~~~~~~~~l~~~l~~~L--~~kr~LlVLDDv~ 275 (519)
+.............+.+++ ++++.+||+|++.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 0000011111222233333 5799999999984
No 49
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.84 E-value=0.0058 Score=58.98 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=58.2
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhccCccCC----CcEEEEEEcCCCCCHHHHHHHHHHhcCCCC-CCcC---CCCCCH
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHY----FDYLAWIPSPYHYDADQILDIVTVILLPFS-MLSK---IKDKDY 251 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l~~il~~l~~~~~-~~~~---~~~~~~ 251 (519)
..-.++.|+|.+|+|||+||..+.-....... -..++|++....++..++.++++....... ..+. ....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCCH
Confidence 34679999999999999999988643222221 357889998888888777765554433110 0000 011222
Q ss_pred H---HHHHHHHHHhcC--CcEEEEecccc
Q 038733 252 E---MKKIILGEYLMT--KRYLIVLDDVW 275 (519)
Q Consensus 252 ~---~l~~~l~~~L~~--kr~LlVLDDv~ 275 (519)
. .....+...+.. +--|||+|.+.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 3 333445555533 56689999873
No 50
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.83 E-value=0.001 Score=68.89 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=42.7
Q ss_pred CCCCCCccccchhHHHHHHHHHhcC--C---------CcceEEEeeCCCCCCHHHHHHHHHhccCccCCC
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEG--P---------TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF 212 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~--~---------~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F 212 (519)
+.....++.|+++.+++|.+.+... . ...+-+.++|++|+|||++|+.+++ .....|
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 4444567899999999999887431 1 1245688999999999999999999 444443
No 51
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.82 E-value=0.0058 Score=58.70 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=57.3
Q ss_pred HHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHH-hc---CCCCCCcCCC
Q 038733 172 LDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTV-IL---LPFSMLSKIK 247 (519)
Q Consensus 172 ~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~-l~---~~~~~~~~~~ 247 (519)
-++|..+=..-.++.|+|.+|+|||++|.++... ....-..++|++.. .++...+.++... +. ..... ..
T Consensus 13 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~~~~~~~~~~~~~~~~~---~~ 86 (225)
T PRK09361 13 DELLGGGFERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFKQIAGEDFEELLSNIII---FE 86 (225)
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHHHHHhhChHhHhhCeEE---Ee
Confidence 3344333345679999999999999999888763 32334567899876 6777666554332 11 10000 01
Q ss_pred CCCHHH---HHHHHHHHhcCCcEEEEeccc
Q 038733 248 DKDYEM---KKIILGEYLMTKRYLIVLDDV 274 (519)
Q Consensus 248 ~~~~~~---l~~~l~~~L~~kr~LlVLDDv 274 (519)
..+..+ ....+...+..+--++|+|.+
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 87 PSSFEEQSEAIRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred CCCHHHHHHHHHHHHHHHHhcccEEEEeCc
Confidence 122222 334444444456668999987
No 52
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.78 E-value=0.0015 Score=66.60 Aligned_cols=50 Identities=8% Similarity=0.237 Sum_probs=42.4
Q ss_pred CCCCccccchhHHHHHHHHHhcC----CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEG----PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
....+++|.++.++++++++... +...+++.++|++|+||||||+.+.+.
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33448999999999999999763 234689999999999999999999885
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.0088 Score=60.59 Aligned_cols=77 Identities=17% Similarity=0.310 Sum_probs=53.9
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc----cCccCCCcEEEEEE-cCCCCCHHHHHHHH
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS----SYVKHYFDYLAWIP-SPYHYDADQILDIV 233 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~----~~v~~~F~~~~wv~-vs~~~~~~~l~~il 233 (519)
.+++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.++.. .....|.|...|.. -+......++..+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHH
Confidence 468899999999999987653 3457789999999999999988773 12345677767765 34445555544444
Q ss_pred HHh
Q 038733 234 TVI 236 (519)
Q Consensus 234 ~~l 236 (519)
+.+
T Consensus 83 ~~~ 85 (313)
T PRK05564 83 EEV 85 (313)
T ss_pred HHH
Confidence 443
No 54
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.77 E-value=0.0056 Score=58.01 Aligned_cols=92 Identities=11% Similarity=0.061 Sum_probs=55.3
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHh-c---CCCCCCcCCCCCCHHHHH
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVI-L---LPFSMLSKIKDKDYEMKK 255 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l-~---~~~~~~~~~~~~~~~~l~ 255 (519)
..-+++-|+|.+|+|||+++..+... ....-..++|++... ++..++.++.... . .+-...+.....+.....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 35689999999999999999887663 323346788998865 7777777644432 1 000000000111222335
Q ss_pred HHHHHHhcC-CcEEEEeccc
Q 038733 256 IILGEYLMT-KRYLIVLDDV 274 (519)
Q Consensus 256 ~~l~~~L~~-kr~LlVLDDv 274 (519)
..+.+.+.. +--+||+|.+
T Consensus 87 ~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHhhcCccEEEEeCc
Confidence 555555544 4558999986
No 55
>PRK08727 hypothetical protein; Validated
Probab=96.76 E-value=0.0073 Score=58.46 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=34.2
Q ss_pred ccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc
Q 038733 162 VGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220 (519)
Q Consensus 162 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v 220 (519)
+|-......+..+.... ....+.|+|..|+|||+|++.+++. .........++++
T Consensus 23 ~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~ 77 (233)
T PRK08727 23 AAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPL 77 (233)
T ss_pred CCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeH
Confidence 44444444444433322 2456999999999999999999884 3333334556654
No 56
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.70 E-value=0.0012 Score=56.65 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 57
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.05 Score=56.14 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=45.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCC--CHHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHY--DADQILD-IVTVILLPFSMLSKIKDKDYEMKKIIL 258 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~--~~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l 258 (519)
-.++.++|+.|+||||++..+......+.....+..++ .+.+ ...+-++ ..+.++.... ...+..++...+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~-----~~~~~~~l~~~l 210 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH-----AVKDGGDLQLAL 210 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceE-----ecCCcccHHHHH
Confidence 46999999999999999988877321111122344554 3333 3444455 5555554321 111222333333
Q ss_pred HHHhcCCcEEEEeccc
Q 038733 259 GEYLMTKRYLIVLDDV 274 (519)
Q Consensus 259 ~~~L~~kr~LlVLDDv 274 (519)
. .+.++. ++++|..
T Consensus 211 ~-~l~~~D-lVLIDTa 224 (374)
T PRK14722 211 A-ELRNKH-MVLIDTI 224 (374)
T ss_pred H-HhcCCC-EEEEcCC
Confidence 3 344554 4557876
No 58
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.69 E-value=0.0042 Score=71.27 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-+.++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+...
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999998765 334558999999999999998874
No 59
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.67 E-value=0.0051 Score=70.41 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=39.1
Q ss_pred CCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-+.++||+.++.+++..|.... ..-+.++|.+|+||||+|+.+...
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHH
Confidence 34589999999999999998764 334458999999999999998874
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.0088 Score=65.28 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAka 61 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKS 61 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999997654 2456788999999999999988773
No 61
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.62 E-value=0.0063 Score=68.85 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-++++||+.++++++..|.... ..-+.++|.+|+|||++|+.+.+.
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999987654 334568999999999999998874
No 62
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.57 E-value=0.0053 Score=64.17 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=40.2
Q ss_pred CCCCCCccccchhHHHHHHHHHhcC-----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEG-----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+.....++.|+++.+++|.+.+... -...+-|.++|++|+|||++|+++++.
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 3344567899999999998876421 123556889999999999999999983
No 63
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.53 E-value=0.0071 Score=64.84 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=38.7
Q ss_pred CCCCccccchhHHHHHHHHHhcC-----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEG-----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.++.|.+..+++|.+.+... -...+-+.++|++|+|||++|+.+++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 34456888999999998876421 123456889999999999999999994
No 64
>PRK12377 putative replication protein; Provisional
Probab=96.49 E-value=0.0088 Score=58.32 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=28.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcC
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSP 221 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs 221 (519)
...+.++|..|+|||+||.++.+. .....-.+++++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH
Confidence 467889999999999999999994 43333345666543
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.013 Score=64.94 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999997654 2345569999999999999988773
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.017 Score=59.88 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=39.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|-+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 3478999999999999887653 3456789999999999999999874
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=96.48 E-value=0.014 Score=59.25 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=37.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.++.++.|..++..+. .+-+-++|++|+||||+|+.+.+.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 3468898888888888876543 445678999999999999998873
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.012 Score=63.75 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|-+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999987643 345677899999999999999987
No 69
>PRK06696 uridine kinase; Validated
Probab=96.45 E-value=0.0044 Score=59.57 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHhc-CCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 164 LDDRMEELLDLLIE-GPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 164 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
|.+-+++|.+.+.. ......+|+|.|.+|+||||||+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 56677788887764 344688999999999999999999987
No 70
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.12 Score=55.45 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+|+|+|.+|+||||++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999988766
No 71
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.42 E-value=0.0073 Score=69.46 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=38.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-+.++||+.++.+++..|.... ..-+.++|.+|+|||++|+.+...
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 3569999999999999998765 334447999999999999988774
No 72
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.019 Score=61.41 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=37.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-++++|.+...+.|...+..+. -...+-++|++|+||||+|+.+.+.
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999888888888777553 2356789999999999999999874
No 73
>PHA00729 NTP-binding motif containing protein
Probab=96.38 E-value=0.013 Score=55.91 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 170 ELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++++.+...+ ...|.|.|.+|+||||||..+.+.
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444433 557889999999999999999883
No 74
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.37 E-value=0.018 Score=58.22 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=62.4
Q ss_pred HHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccC----CCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCC-CcC-
Q 038733 172 LDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKH----YFDYLAWIPSPYHYDADQILDIVTVILLPFSM-LSK- 245 (519)
Q Consensus 172 ~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~-~~~- 245 (519)
-++|..+=..-+++-|+|.+|+|||+|+..+.-...... .=..++|++.-..|++.++.++++.++..... .++
T Consensus 86 D~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i 165 (313)
T TIGR02238 86 DGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNI 165 (313)
T ss_pred HHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcE
Confidence 334444333567999999999999999977653222211 11368899999999999998877776542110 000
Q ss_pred --CCCCCHHHHH---HHHHHHhc-CCcEEEEecccc
Q 038733 246 --IKDKDYEMKK---IILGEYLM-TKRYLIVLDDVW 275 (519)
Q Consensus 246 --~~~~~~~~l~---~~l~~~L~-~kr~LlVLDDv~ 275 (519)
....+.+... ..+...+. .+--|||+|.+-
T Consensus 166 ~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 166 LYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred EEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 0112333333 33333443 344489999873
No 75
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.36 E-value=0.0092 Score=58.71 Aligned_cols=92 Identities=12% Similarity=0.245 Sum_probs=53.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCC-cEEEEEEcCCCCC-HHHHHH-HHHHhcCCCC-CCcCCCCCC------H
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF-DYLAWIPSPYHYD-ADQILD-IVTVILLPFS-MLSKIKDKD------Y 251 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F-~~~~wv~vs~~~~-~~~l~~-il~~l~~~~~-~~~~~~~~~------~ 251 (519)
-.-++|.|..|+|||||++.+++ .++.+| +.++++-+++... +.++.. +...-..... .-....+.. .
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999999999999 455455 4566777776543 344444 4432110000 000000111 1
Q ss_pred HHHHHHHHHHh--c-CCcEEEEecccc
Q 038733 252 EMKKIILGEYL--M-TKRYLIVLDDVW 275 (519)
Q Consensus 252 ~~l~~~l~~~L--~-~kr~LlVLDDv~ 275 (519)
....-.+.+++ + ++++|+++||+-
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 12233455666 3 899999999983
No 76
>PRK07667 uridine kinase; Provisional
Probab=96.36 E-value=0.0052 Score=57.65 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+.|.+.+........+|+|-|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777766655678999999999999999999988
No 77
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.30 E-value=0.01 Score=57.58 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=35.1
Q ss_pred CCccccchh-HHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc
Q 038733 158 NRNMVGLDD-RMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220 (519)
Q Consensus 158 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v 220 (519)
++-++|-+. .+..+.++.... ....+.|+|+.|+|||+|++.+++. ....-..+.++++
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~ 81 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPL 81 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEH
Confidence 344456333 333333333322 3467889999999999999999984 3222223455554
No 78
>PRK05642 DNA replication initiation factor; Validated
Probab=96.29 E-value=0.017 Score=56.00 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=26.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v 220 (519)
...+.|+|..|+|||.|++.+.+. ....-..++|++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeH
Confidence 367889999999999999999873 2222234556654
No 79
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.29 E-value=0.024 Score=57.23 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=38.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+++.++.+..++.... .+.+-++|..|+||||+|+.+.+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999997643 455799999999999999999884
No 80
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.27 E-value=0.019 Score=64.86 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=38.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999987653 2445689999999999999999884
No 81
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.27 E-value=0.019 Score=58.64 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=62.0
Q ss_pred HHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCcc----CCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCC-CcC--
Q 038733 173 DLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVK----HYFDYLAWIPSPYHYDADQILDIVTVILLPFSM-LSK-- 245 (519)
Q Consensus 173 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~----~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~-~~~-- 245 (519)
++|..+=..-+++-|.|.+|+|||+|+..++-..... ..-..++|++.-..|++.++.++++.++..... .++
T Consensus 117 ~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~ 196 (344)
T PLN03187 117 ELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNII 196 (344)
T ss_pred hhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEE
Confidence 3444433356788899999999999998775322221 112468999999999999998877776543210 000
Q ss_pred -CCCCCHHHHH---HHHHHHhcC-CcEEEEeccc
Q 038733 246 -IKDKDYEMKK---IILGEYLMT-KRYLIVLDDV 274 (519)
Q Consensus 246 -~~~~~~~~l~---~~l~~~L~~-kr~LlVLDDv 274 (519)
....+.+++. ..+...+.. +--|||+|.+
T Consensus 197 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 197 YARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred EecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1122344333 333333433 3448899987
No 82
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.27 E-value=0.25 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..|++++|+.|+||||++..+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 469999999999999998888763
No 83
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.25 E-value=0.0054 Score=65.84 Aligned_cols=45 Identities=9% Similarity=0.266 Sum_probs=39.4
Q ss_pred ccccchhHHHHHHHHHhc----CCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 160 NMVGLDDRMEELLDLLIE----GPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+++|.++.+++|++.|.. -+..-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 689999999999999933 244568999999999999999999987
No 84
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.25 E-value=0.03 Score=56.80 Aligned_cols=103 Identities=15% Similarity=0.140 Sum_probs=61.9
Q ss_pred HHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC----cEEEEEEcCCCCCHHHHHHHHHHhcCCCCC-CcCC
Q 038733 172 LDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF----DYLAWIPSPYHYDADQILDIVTVILLPFSM-LSKI 246 (519)
Q Consensus 172 ~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F----~~~~wv~vs~~~~~~~l~~il~~l~~~~~~-~~~~ 246 (519)
-++|..+=..-.++-|+|.+|+|||+|+..+.-.......+ ..++|++....|+..++.++++.++..... .+.+
T Consensus 92 D~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i 171 (317)
T PRK04301 92 DELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNI 171 (317)
T ss_pred HHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccE
Confidence 33444333356789999999999999998876542221111 378999999999999888866665432110 0000
Q ss_pred ---CCCC---HHHHHHHHHHHhcC-Cc-EEEEeccc
Q 038733 247 ---KDKD---YEMKKIILGEYLMT-KR-YLIVLDDV 274 (519)
Q Consensus 247 ---~~~~---~~~l~~~l~~~L~~-kr-~LlVLDDv 274 (519)
...+ ...+...+...+.. .+ -|||+|.+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSi 207 (317)
T PRK04301 172 HVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSL 207 (317)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECc
Confidence 1111 12334455555544 33 48999987
No 85
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.024 Score=62.11 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=39.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999998654 2467789999999999999998773
No 86
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.22 E-value=0.04 Score=62.82 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=40.7
Q ss_pred CCccccchhHHHHHHHHHhc----CCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC
Q 038733 158 NRNMVGLDDRMEELLDLLIE----GPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF 212 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F 212 (519)
..+++|.+..++.|.+++.. ......++.++|++|+|||++|+.+.+ .....|
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 44589999999999887642 222345899999999999999999998 444444
No 87
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0056 Score=66.53 Aligned_cols=106 Identities=15% Similarity=0.077 Sum_probs=65.6
Q ss_pred CCCCccccchhHHHHHHHHHhc----CCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 156 SKNRNMVGLDDRMEELLDLLIE----GPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
..+.+-+|.++.+++|++.|.- ..-.-++++.||++|+|||+|++.|.. .....|- -+.++.--|..+|
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEI-- 392 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEI-- 392 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHh--
Confidence 3456679999999999999853 233457999999999999999999999 5666652 2233433333332
Q ss_pred HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccC
Q 038733 232 IVTVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWST 277 (519)
Q Consensus 232 il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~ 277 (519)
.++.. .-+..+ +..+.+.+++ ...++-+++||.+...
T Consensus 393 -----RGHRR--TYIGam-PGrIiQ~mkk-a~~~NPv~LLDEIDKm 429 (782)
T COG0466 393 -----RGHRR--TYIGAM-PGKIIQGMKK-AGVKNPVFLLDEIDKM 429 (782)
T ss_pred -----ccccc--cccccC-ChHHHHHHHH-hCCcCCeEEeechhhc
Confidence 11110 001111 2233333332 2457789999988643
No 88
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.026 Score=60.90 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=38.4
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999988887654 3456789999999999999999875
No 89
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.19 E-value=0.014 Score=57.23 Aligned_cols=104 Identities=22% Similarity=0.185 Sum_probs=60.8
Q ss_pred HHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCC----CcEEEEEEcCCCCCHHHHHHHHHHhcCCCC-CCcC
Q 038733 171 LLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHY----FDYLAWIPSPYHYDADQILDIVTVILLPFS-MLSK 245 (519)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l~~il~~l~~~~~-~~~~ 245 (519)
|-++|..+=..-.++=|+|.+|+|||.|+-.++-...+... =..++|++-...|+..++.+|++....... ..+.
T Consensus 27 lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~ 106 (256)
T PF08423_consen 27 LDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDN 106 (256)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHT
T ss_pred HHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhc
Confidence 33444333223568999999999999999877654333221 135889999999999999887765432110 0000
Q ss_pred ---CCCCCHHHHHH---HHHHHhc-CCcEEEEeccc
Q 038733 246 ---IKDKDYEMKKI---ILGEYLM-TKRYLIVLDDV 274 (519)
Q Consensus 246 ---~~~~~~~~l~~---~l~~~L~-~kr~LlVLDDv 274 (519)
....+.+++.. .+...+. .+=-|||+|.+
T Consensus 107 I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 107 IFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred eeeeecCCHHHHHHHHHHHHhhccccceEEEEecch
Confidence 01123344433 3333343 34459999987
No 90
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.19 E-value=0.056 Score=51.75 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=54.3
Q ss_pred Cccccc-hhHHHHHHHHHhcC-CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC-c-EEEEEEcCCCCCHHHHHH-HH
Q 038733 159 RNMVGL-DDRMEELLDLLIEG-PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF-D-YLAWIPSPYHYDADQILD-IV 233 (519)
Q Consensus 159 ~~~vGr-~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F-~-~~~wv~vs~~~~~~~l~~-il 233 (519)
.-++|- .+..-...+.+.+. +.....+-|+|..|+|||.|.+++++. ..+.. + .+++++ ..++.. +.
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~ 80 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFA 80 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHH
Confidence 334564 33333444444443 334556889999999999999999994 32221 1 244553 455666 66
Q ss_pred HHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccC
Q 038733 234 TVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWST 277 (519)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~ 277 (519)
..+.... ...+++.+++ -=+|++||+..-
T Consensus 81 ~~~~~~~--------------~~~~~~~~~~-~DlL~iDDi~~l 109 (219)
T PF00308_consen 81 DALRDGE--------------IEEFKDRLRS-ADLLIIDDIQFL 109 (219)
T ss_dssp HHHHTTS--------------HHHHHHHHCT-SSEEEEETGGGG
T ss_pred HHHHccc--------------chhhhhhhhc-CCEEEEecchhh
Confidence 6554311 1234444443 337788999764
No 91
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.19 E-value=0.026 Score=54.94 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEE
Q 038733 167 RMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIP 219 (519)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~ 219 (519)
.+..+.++..........+-++|.+|+|||+||.++.+. ....-..+++++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it 134 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE
Confidence 344455555433333457889999999999999999994 322223445553
No 92
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.14 E-value=0.0081 Score=55.30 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=28.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
...+|.++|+.|+||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 356999999999999999999998 455455555555
No 93
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.026 Score=59.15 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|..+.+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999988887653 2345778999999999999998773
No 94
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.037 Score=60.10 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=38.1
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.+...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999988654 2345678999999999999998763
No 95
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.10 E-value=0.032 Score=56.54 Aligned_cols=105 Identities=15% Similarity=0.086 Sum_probs=61.4
Q ss_pred HHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccC----CCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCC-Cc
Q 038733 170 ELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKH----YFDYLAWIPSPYHYDADQILDIVTVILLPFSM-LS 244 (519)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~-~~ 244 (519)
.|-.+|..+=..-.++.|.|.+|+|||||+..+........ .-..++|+.....++..++.++++.++..... .+
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~ 163 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLD 163 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhc
Confidence 34444544434578999999999999999988765322211 11357899988888888876666665432110 00
Q ss_pred C---CCCCCHHHHH---HHHHHHhcC-CcEEEEeccc
Q 038733 245 K---IKDKDYEMKK---IILGEYLMT-KRYLIVLDDV 274 (519)
Q Consensus 245 ~---~~~~~~~~l~---~~l~~~L~~-kr~LlVLDDv 274 (519)
+ ....+.+++. ..+...+.. +--|||+|.+
T Consensus 164 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI 200 (316)
T TIGR02239 164 NVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSA 200 (316)
T ss_pred cEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECc
Confidence 0 0112333333 333333433 4458999987
No 96
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.09 E-value=0.02 Score=55.13 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCCCCCccccchhHHHHHHHHHhc--CCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIE--GPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
....-++++|.+..++.|++-... ......-+-+||..|.|||+|++++.+.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 345567899999999988765432 1223555667999999999999999883
No 97
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.08 E-value=0.015 Score=61.32 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=38.8
Q ss_pred CccccchhHHHHHHHHHhcC-----------CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC
Q 038733 159 RNMVGLDDRMEELLDLLIEG-----------PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF 212 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F 212 (519)
.++.|.+..+++|.+.+.-. -...+-+.++|++|+|||++|+.+.+ .....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 46788999999888877421 01345677899999999999999999 444444
No 98
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.06 E-value=0.013 Score=61.31 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=39.6
Q ss_pred CCCCCCccccchhHHHHHHHHHhcC---C--------CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEG---P--------TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~---~--------~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
|...-.++.|.+..+++|.+.+... + ...+-+.++|++|+|||+||+.+.+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3344457889999998888876421 0 23567889999999999999999993
No 99
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.05 E-value=0.027 Score=62.18 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=38.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 3579999999999999998653 245678999999999999998877
No 100
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.02 E-value=0.047 Score=55.84 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=63.5
Q ss_pred HHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCC----CcEEEEEEcCCCCCHHHHHHHHHHhcCCCC-CCcC
Q 038733 171 LLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHY----FDYLAWIPSPYHYDADQILDIVTVILLPFS-MLSK 245 (519)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l~~il~~l~~~~~-~~~~ 245 (519)
|-++|..+=..-.++-|.|.+|+|||+|+..++-....... =..++|++.-..|++.++.+|++.++.... ..++
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~ 191 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLEN 191 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccc
Confidence 34444444345678889999999999999877653222111 126899999999999998888777654221 0001
Q ss_pred ---CCCCCHHHHHHHHH---HHh-cCCcEEEEeccc
Q 038733 246 ---IKDKDYEMKKIILG---EYL-MTKRYLIVLDDV 274 (519)
Q Consensus 246 ---~~~~~~~~l~~~l~---~~L-~~kr~LlVLDDv 274 (519)
....+.+.+...+. ..+ ..+--|||+|-+
T Consensus 192 i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI 227 (342)
T PLN03186 192 VAYARAYNTDHQSELLLEAASMMAETRFALMIVDSA 227 (342)
T ss_pred eEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCc
Confidence 11233444433332 333 334558999987
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.034 Score=60.02 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=38.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.++||-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999997653 2346788999999999999988773
No 102
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.01 E-value=0.033 Score=53.16 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=52.9
Q ss_pred HHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHh----cCCCCCCcCC
Q 038733 171 LLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVI----LLPFSMLSKI 246 (519)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l----~~~~~~~~~~ 246 (519)
|-.+|..+=..-.++.|.|.+|+||||||.++... ....=..++|+.....++ ..+.+++... ..... -.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~-~~~~~~~~~~~~~~~~~~~---~~ 81 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS-ERFRQIAGDRPERAASSII---VF 81 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH-HHHHHHHhHChHhhhcCEE---EE
Confidence 33444333335679999999999999999887763 222223567887655554 3333343321 11000 00
Q ss_pred CCCCHHHH---HHHHHHHhcCCcEEEEeccc
Q 038733 247 KDKDYEMK---KIILGEYLMTKRYLIVLDDV 274 (519)
Q Consensus 247 ~~~~~~~l---~~~l~~~L~~kr~LlVLDDv 274 (519)
...+..++ ...+...+..+--++|+|-+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi 112 (218)
T cd01394 82 EPMDFNEQGRAIQETETFADEKVDLVVVDSA 112 (218)
T ss_pred eCCCHHHHHHHHHHHHHHHhcCCcEEEEech
Confidence 11222222 33444445444568888976
No 103
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.97 E-value=0.028 Score=59.72 Aligned_cols=96 Identities=22% Similarity=0.277 Sum_probs=54.8
Q ss_pred CCccccchhHH--HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC-c-EEEEEEcCCCCCHHHHHH-H
Q 038733 158 NRNMVGLDDRM--EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF-D-YLAWIPSPYHYDADQILD-I 232 (519)
Q Consensus 158 ~~~~vGr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F-~-~~~wv~vs~~~~~~~l~~-i 232 (519)
++-++|-.... ....++... +....-+-|+|..|+|||+|++++.+. +.... . .++|++. .++.. +
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~-~~~~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~ 175 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKN-PGRYNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDL 175 (440)
T ss_pred cccccCCchHHHHHHHHHHHhC-cCCCCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHH
Confidence 33455744432 233333332 222456899999999999999999994 43332 3 3456643 45566 6
Q ss_pred HHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEeccccc
Q 038733 233 VTVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~ 276 (519)
...+... .... +++.+..+.-+|++||+..
T Consensus 176 ~~~~~~~----------~~~~----f~~~~~~~~dvLlIDDi~~ 205 (440)
T PRK14088 176 VDSMKEG----------KLNE----FREKYRKKVDVLLIDDVQF 205 (440)
T ss_pred HHHHhcc----------cHHH----HHHHHHhcCCEEEEechhh
Confidence 6555421 1122 2333333455899999974
No 104
>PRK08181 transposase; Validated
Probab=95.95 E-value=0.11 Score=51.36 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=20.4
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-+.++|.+|+|||.||..+.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~ 129 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA 129 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH
Confidence 35889999999999999999873
No 105
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.02 Score=54.13 Aligned_cols=79 Identities=15% Similarity=0.072 Sum_probs=45.7
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIKDKDYEMKKIILG 259 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~ 259 (519)
.+.+|||.|.+|.||||+|+.++. .+...+ .+-++-..-+. ..=.. ..+....... .....+.+-+.+.|.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d---~p~A~D~dLl~~~L~ 78 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYK-DQSHLPFEERNKINYD---HPEAFDLDLLIEHLK 78 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeecccccc-chhhcCHhhcCCcCcc---ChhhhcHHHHHHHHH
Confidence 468999999999999999999998 444331 11111111111 00001 1111111111 234567788888898
Q ss_pred HHhcCCcE
Q 038733 260 EYLMTKRY 267 (519)
Q Consensus 260 ~~L~~kr~ 267 (519)
..++++..
T Consensus 79 ~L~~g~~v 86 (218)
T COG0572 79 DLKQGKPV 86 (218)
T ss_pred HHHcCCcc
Confidence 88888874
No 106
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.94 E-value=0.02 Score=53.86 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=33.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcC-CCCCHHHHHH-HHHHhcCC
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSP-YHYDADQILD-IVTVILLP 239 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs-~~~~~~~l~~-il~~l~~~ 239 (519)
.+||.+||+.|+||||.+-.+......+ =..+..++.. ......+-++ ..+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 3689999999999999555444422222 2235566643 2234445555 77777653
No 107
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.014 Score=63.45 Aligned_cols=105 Identities=17% Similarity=0.154 Sum_probs=66.7
Q ss_pred CCCCccccchhHHHHHHHHHhc----CCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 156 SKNRNMVGLDDRMEELLDLLIE----GPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
..+.+-+|+++-+++|++++.- +..+-++++.+|++|||||++|+.|.. .....|-. ++|+.-.|..+|-
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFfR---fSvGG~tDvAeIk- 481 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFFR---FSVGGMTDVAEIK- 481 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceEE---EeccccccHHhhc-
Confidence 3456779999999999999853 345688999999999999999999998 56555522 3455555544422
Q ss_pred HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEeccccc
Q 038733 232 IVTVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 232 il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~ 276 (519)
++.. .-...+ +..+.+.|++ .+..+-|+.+|.|..
T Consensus 482 ------GHRR--TYVGAM-PGkiIq~LK~-v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 482 ------GHRR--TYVGAM-PGKIIQCLKK-VKTENPLILIDEVDK 516 (906)
T ss_pred ------ccce--eeeccC-ChHHHHHHHh-hCCCCceEEeehhhh
Confidence 1110 000111 2333333332 345667888888864
No 108
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.90 E-value=0.05 Score=56.03 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=42.4
Q ss_pred cceEEEeeCCCCCCHHH-HHHHHHhccCccCCCcEEEEEEcC-CCCCHHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTI-FTAEAYNSSYVKHYFDYLAWIPSP-YHYDADQILD-IVTVILLPFSMLSKIKDKDYEMKKII 257 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTt-LA~~v~~~~~v~~~F~~~~wv~vs-~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~ 257 (519)
+-++|.+||+.|+|||| ||+..+.-.....+ ..+..++.. --....+-++ ..+-++.+-. ...+..++...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-----vv~~~~el~~a 275 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLE-----VVYSPKELAEA 275 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceE-----EecCHHHHHHH
Confidence 37899999999999998 88887773312222 334555542 2233444444 5555554332 23345555555
Q ss_pred HHH
Q 038733 258 LGE 260 (519)
Q Consensus 258 l~~ 260 (519)
+..
T Consensus 276 i~~ 278 (407)
T COG1419 276 IEA 278 (407)
T ss_pred HHH
Confidence 443
No 109
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.90 E-value=0.0094 Score=60.78 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|++..++.+..++..+. .+.+-++|+.|+||||+|+.+.+.
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999887653 456779999999999999998873
No 110
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.039 Score=60.69 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-+++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478998888888999888654 345678999999999999999865
No 111
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.84 E-value=0.067 Score=55.00 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=38.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..++.+.+++..+. -...+-++|+.|+||||+|+.+...
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999997653 2457789999999999999888763
No 112
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.81 E-value=0.024 Score=61.72 Aligned_cols=47 Identities=11% Similarity=0.153 Sum_probs=39.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..++.+.+++..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999987653 2457889999999999999998773
No 113
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.80 E-value=0.059 Score=53.28 Aligned_cols=99 Identities=14% Similarity=0.009 Sum_probs=62.8
Q ss_pred HhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHH-hcCCCCCCcCCCCCCHHH
Q 038733 175 LIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTV-ILLPFSMLSKIKDKDYEM 253 (519)
Q Consensus 175 L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~-l~~~~~~~~~~~~~~~~~ 253 (519)
|..+=+.-+++=|+|+.|.||||+|.+++-. .+..-...+|+..-..+++..+.++... +.. ....+.....+...
T Consensus 53 LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~-l~v~~~~~~e~q~~ 129 (279)
T COG0468 53 LGGGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDN-LLVSQPDTGEQQLE 129 (279)
T ss_pred hcCCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcc-eeEecCCCHHHHHH
Confidence 3333345789999999999999999887763 4444448899999999999998886665 322 10000011122333
Q ss_pred HHHHHHHHhcCCcEEEEeccccc
Q 038733 254 KKIILGEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 254 l~~~l~~~L~~kr~LlVLDDv~~ 276 (519)
+...+......+=-|+|+|.|-.
T Consensus 130 i~~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 130 IAEKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHHHHhccCCCCEEEEecCcc
Confidence 44444444444456899998743
No 114
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.78 E-value=0.056 Score=58.16 Aligned_cols=47 Identities=11% Similarity=0.026 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|-+..+..|...+..+. -..-+-++|+.|+||||+|+.+++.
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999998888776543 2457788999999999999999874
No 115
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.77 E-value=0.041 Score=54.88 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+++++|++|+||||++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999998887763
No 116
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.0087 Score=53.49 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=25.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCC-CcEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHY-FDYLA 216 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~-F~~~~ 216 (519)
..-|.|.||+|+||||+++.+.+ ..+.. |...-
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgG 38 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGG 38 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCceeee
Confidence 45689999999999999999998 44333 65433
No 117
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.046 Score=58.44 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.++||-+..++.|.+.+..+. -..-+-++|+.|+||||+|+.+..
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 3478999998888888887654 234788999999999999998875
No 118
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.76 E-value=0.053 Score=48.33 Aligned_cols=40 Identities=8% Similarity=0.078 Sum_probs=29.1
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD 225 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~ 225 (519)
++.|.|.+|+||||+++.+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4679999999999999998873 333335677877665543
No 119
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.73 E-value=0.039 Score=58.87 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=52.3
Q ss_pred ccccchhH--HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCc--EEEEEEcCCCCCHHHHHH-HHH
Q 038733 160 NMVGLDDR--MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFD--YLAWIPSPYHYDADQILD-IVT 234 (519)
Q Consensus 160 ~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~--~~~wv~vs~~~~~~~l~~-il~ 234 (519)
-++|.... ......+....+.....+-|+|..|+|||+|++++.+ ++...+. .+++++. .++.. +..
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~ 195 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVN 195 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHH
Confidence 35565443 3333333333233346688999999999999999999 4444432 2445543 33444 444
Q ss_pred HhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEeccccc
Q 038733 235 VILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~ 276 (519)
.+... ..+ .+.+.+++ --+|++||+..
T Consensus 196 ~~~~~----------~~~----~~~~~~~~-~dlLiiDDi~~ 222 (450)
T PRK00149 196 ALRNN----------TME----EFKEKYRS-VDVLLIDDIQF 222 (450)
T ss_pred HHHcC----------cHH----HHHHHHhc-CCEEEEehhhh
Confidence 44321 112 22333332 34888999964
No 120
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.72 E-value=0.0072 Score=51.97 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.3
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|.|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999883
No 121
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.011 Score=57.69 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=40.9
Q ss_pred CCCccccchhHHHHHHHHHhcC---CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG---PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|.++-++.+.=++... ...+--+-++|++|.||||||..+.+.
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 3457999999999988777642 456778999999999999999999994
No 122
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.71 E-value=0.0095 Score=56.51 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.8
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+|+|.|.+|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999983
No 123
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.71 E-value=0.0074 Score=56.59 Aligned_cols=83 Identities=13% Similarity=0.021 Sum_probs=45.5
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCccC-CCc---EEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHH
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVKH-YFD---YLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILG 259 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~~-~F~---~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 259 (519)
||+|.|.+|+||||+|+.+... ... .+. ....+....-.........-. ..............+.+.+.+.++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~--L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI--LNKRGIPAMEMDIILSLDDFYDDYHLRDRKG-RGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--HTTCTTTCCCSEEEEEGGGGBHHHHHHHHHH-HCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--hCccCcCccceeEEEeecccccccchhhHhh-ccccccCCCCccccCHHHHHHHHH
Confidence 7999999999999999999883 332 122 123333222222111111111 111111111234567888888888
Q ss_pred HHhcCCcEEE
Q 038733 260 EYLMTKRYLI 269 (519)
Q Consensus 260 ~~L~~kr~Ll 269 (519)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 8777776544
No 124
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.68 E-value=0.024 Score=64.25 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=38.3
Q ss_pred CCCCccccchhHHHHHHHHHhcC-----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEG-----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-+++.|.+..+++|.+++... -...+-+.++|++|+||||||+.+.+.
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 33446889999999998877421 012456889999999999999999983
No 125
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.66 E-value=0.043 Score=57.74 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=51.8
Q ss_pred ccccchhHH--HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC--cEEEEEEcCCCCCHHHHHH-HHH
Q 038733 160 NMVGLDDRM--EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF--DYLAWIPSPYHYDADQILD-IVT 234 (519)
Q Consensus 160 ~~vGr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F--~~~~wv~vs~~~~~~~l~~-il~ 234 (519)
-++|..... ..+..+..........+.|+|..|+|||+|++++++. +.... -.+++++ ..++.. +..
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~ 183 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVN 183 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHH
Confidence 356755442 2223333322223456889999999999999999994 33322 1244553 334455 555
Q ss_pred HhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEeccccc
Q 038733 235 VILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~ 276 (519)
.+... ..... .+.+.+ .-+|++||+..
T Consensus 184 ~~~~~----------~~~~~----~~~~~~-~dlLiiDDi~~ 210 (405)
T TIGR00362 184 ALRNN----------KMEEF----KEKYRS-VDLLLIDDIQF 210 (405)
T ss_pred HHHcC----------CHHHH----HHHHHh-CCEEEEehhhh
Confidence 55421 12222 233332 23788999964
No 126
>PTZ00301 uridine kinase; Provisional
Probab=95.66 E-value=0.011 Score=56.24 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|+|.|.+|.||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 127
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.66 E-value=0.083 Score=53.42 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=45.8
Q ss_pred HHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCC----CcEEEEEEcCCCCCHHHHHHHHHHhc
Q 038733 173 DLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHY----FDYLAWIPSPYHYDADQILDIVTVIL 237 (519)
Q Consensus 173 ~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l~~il~~l~ 237 (519)
.+|..+=..-.++-|+|.+|+|||||+..++-....... =..++|+..-..|+..++.++++.++
T Consensus 86 ~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~g 154 (310)
T TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARG 154 (310)
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcC
Confidence 444433234678999999999999999888664322111 12689999988899998877665544
No 128
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.65 E-value=0.011 Score=56.03 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.6
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+|+|+|++|+|||||++.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999873
No 129
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.63 E-value=0.016 Score=55.94 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.5
Q ss_pred CCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 179 PTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 179 ~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.....+++|.|..|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999999887
No 130
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.62 E-value=0.057 Score=59.51 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999887643 2345889999999999999888774
No 131
>PRK08233 hypothetical protein; Provisional
Probab=95.61 E-value=0.011 Score=54.55 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999873
No 132
>PTZ00035 Rad51 protein; Provisional
Probab=95.60 E-value=0.087 Score=53.88 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=62.1
Q ss_pred HHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCcc---C-CCcEEEEEEcCCCCCHHHHHHHHHHhcCCCC-CCc
Q 038733 170 ELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVK---H-YFDYLAWIPSPYHYDADQILDIVTVILLPFS-MLS 244 (519)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~---~-~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~-~~~ 244 (519)
.|-++|..+=..-.++.|+|..|+|||||+..+.-..... . .=..++|+.....|+..++.++++.++.... ..+
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~ 185 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLD 185 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhh
Confidence 3344454443457899999999999999998886533321 0 1135679998888898887777666544211 000
Q ss_pred C---CCCCCHHHHHHHH---HHHhc-CCcEEEEecccc
Q 038733 245 K---IKDKDYEMKKIIL---GEYLM-TKRYLIVLDDVW 275 (519)
Q Consensus 245 ~---~~~~~~~~l~~~l---~~~L~-~kr~LlVLDDv~ 275 (519)
+ ....+.+++...+ ...+. .+--|||+|.+.
T Consensus 186 nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 186 NIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred ceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0 0122333433333 33333 344589999873
No 133
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.017 Score=64.34 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=37.7
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..-+.++||++++.++++.|.....+-+|+ +|.+|||||+++.-+..
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPvL--iGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPVL--VGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCeE--ecCCCCCHHHHHHHHHH
Confidence 344678999999999999999876555554 89999999997755554
No 134
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.04 Score=58.49 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|-+..+..|..++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999988754 2346789999999999999999883
No 135
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.58 E-value=0.05 Score=60.03 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.++||-+..++.|.+.+..+. -...+-++|..|+||||+|+.+.+.
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999887654 2345788999999999999998773
No 136
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.57 E-value=0.04 Score=55.70 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=53.5
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHH---HHHhcCCCCCCcCCCCCCHHHHHH
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDI---VTVILLPFSMLSKIKDKDYEMKKI 256 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~i---l~~l~~~~~~~~~~~~~~~~~l~~ 256 (519)
+.-+++-|.|++|+||||||.++.-. ....-..++|+.....++......+ +..+... ...+.++...
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~-------~p~~~eq~l~ 123 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLIS-------QPDTGEQALE 123 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHHHHHHcCCCHHHheec-------CCCCHHHHHH
Confidence 34678889999999999999886653 2233356789987776665432221 1222211 1224455566
Q ss_pred HHHHHhcC-CcEEEEecccc
Q 038733 257 ILGEYLMT-KRYLIVLDDVW 275 (519)
Q Consensus 257 ~l~~~L~~-kr~LlVLDDv~ 275 (519)
.+...++. .--++|+|.|-
T Consensus 124 i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHhccCCCEEEEcchH
Confidence 66555543 45589999874
No 137
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.53 E-value=0.056 Score=57.58 Aligned_cols=99 Identities=13% Similarity=0.173 Sum_probs=54.5
Q ss_pred CCccccchhH--HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC--cEEEEEEcCCCCCHHHHHH-H
Q 038733 158 NRNMVGLDDR--MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF--DYLAWIPSPYHYDADQILD-I 232 (519)
Q Consensus 158 ~~~~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F--~~~~wv~vs~~~~~~~l~~-i 232 (519)
+.-++|-... ......+....+.....+-|+|..|+|||+|++++.+. +.... -.+++++ ..++.. +
T Consensus 115 dnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~ 186 (450)
T PRK14087 115 ENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKA 186 (450)
T ss_pred hcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHH
Confidence 3345665443 22333333322223456889999999999999999983 32211 1233433 356666 7
Q ss_pred HHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccC
Q 038733 233 VTVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWST 277 (519)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~ 277 (519)
...+.... .....+++.+.. .-+||+||+...
T Consensus 187 ~~~l~~~~------------~~~~~~~~~~~~-~dvLiIDDiq~l 218 (450)
T PRK14087 187 VDILQKTH------------KEIEQFKNEICQ-NDVLIIDDVQFL 218 (450)
T ss_pred HHHHHHhh------------hHHHHHHHHhcc-CCEEEEeccccc
Confidence 76665310 112334444443 347888999643
No 138
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.69 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=20.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.||+++|+.|+||||.+..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 46999999999999998877776
No 139
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.084 Score=55.14 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhcCCC--------cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 159 RNMVGLDDRMEELLDLLIEGPT--------QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
++++|-+..++.|.+++..+.. -..-+-++|+.|+||||+|..+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999976431 245688999999999999998866
No 140
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.053 Score=58.06 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=62.8
Q ss_pred CCccccchhHHHHHHHHHhcC--C--------CcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHH
Q 038733 158 NRNMVGLDDRMEELLDLLIEG--P--------TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDAD 227 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~--~--------~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~ 227 (519)
-.++-|.+..+.++.+++..- + ...+=+-++|++|+|||.||+++.+. ..-.| +.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch----
Confidence 356788999999999887642 1 23566778999999999999999994 43333 222211
Q ss_pred HHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccC
Q 038733 228 QILDIVTVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWST 277 (519)
Q Consensus 228 ~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~ 277 (519)
+ |+... ...+++.+.+...+.-..-.+++.+|++.--
T Consensus 258 e---ivSGv----------SGESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 E---IVSGV----------SGESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred h---hhccc----------CcccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 0 11111 2234455555555556678899999998643
No 141
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=1.1 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=20.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++++|..|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999998887665
No 142
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.45 E-value=0.52 Score=50.65 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=33.2
Q ss_pred CCccccchhHHHHHHHHHhc--------CCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIE--------GPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.++.|.+.-++.+.+.... +-...+-|-++|++|+|||.+|+.+.+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 34677877666655543211 1123566889999999999999999993
No 143
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.43 E-value=0.015 Score=57.20 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=32.7
Q ss_pred ccccchhHHHHHHHH---Hhc----------CCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 160 NMVGLDDRMEELLDL---LIE----------GPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~---L~~----------~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+++|.+..++.|.+. +.- ..+...-+.++|++|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 588988877776543 211 022455677899999999999999977
No 144
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.43 E-value=0.02 Score=57.94 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=40.8
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.+++|.+...+.+..++..+. -..++-++|++|+||||+|+.+++.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 344678999999999999998643 3567778999999999999999883
No 145
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.42 E-value=0.042 Score=62.28 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=43.3
Q ss_pred CCccccchhHHHHHHHHHhcC-------CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCC
Q 038733 158 NRNMVGLDDRMEELLDLLIEG-------PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPY 222 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~ 222 (519)
...++|.+..++.+.+.+... +....++.++|+.|+|||+||+.+... . +...+.+.++.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se 519 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSE 519 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCch
Confidence 356789999999998887632 123457889999999999999999883 3 22345555554
No 146
>PRK06547 hypothetical protein; Provisional
Probab=95.42 E-value=0.024 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=23.1
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
....+|+|.|..|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999874
No 147
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.39 E-value=0.041 Score=52.15 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=38.2
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..-.++||-++.++.+.-.-.+++ .+-+.|.||+|+||||-+..+.+
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 334579999999999887776655 78888999999999997776666
No 148
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.39 E-value=0.097 Score=54.24 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=39.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..++.+.+.+..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999997653 3457889999999999999998773
No 149
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.38 E-value=0.053 Score=54.80 Aligned_cols=90 Identities=16% Similarity=0.042 Sum_probs=52.3
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHH
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILG 259 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 259 (519)
+.-+++-|.|++|+||||||.++... ....=..++|+...+.++... ++.++......--....+.++....+.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~~----a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPVY----ARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHHH----HHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 35679999999999999999876653 322334577887766655432 222222100000001123455555555
Q ss_pred HHhc-CCcEEEEecccc
Q 038733 260 EYLM-TKRYLIVLDDVW 275 (519)
Q Consensus 260 ~~L~-~kr~LlVLDDv~ 275 (519)
..++ +.--++|+|.|-
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 5553 355689999874
No 150
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.38 E-value=0.095 Score=59.48 Aligned_cols=23 Identities=22% Similarity=-0.022 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..++.|+|+.|.|||||.+.+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHH
Confidence 57999999999999999998865
No 151
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.55 Score=48.47 Aligned_cols=86 Identities=9% Similarity=0.047 Sum_probs=47.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC--HHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD--ADQILD-IVTVILLPFSMLSKIKDKDYEMKKII 257 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~--~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~ 257 (519)
..+++.++|+.|+||||++..+......+ . ..+.+++.. ++. ..+-++ ..+.++.... ...+..++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~-g-~~V~lItaD-tyR~gAveQLk~yae~lgvpv~-----~~~dp~dL~~a 276 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ-N-RTVGFITTD-TFRSGAVEQFQGYADKLDVELI-----VATSPAELEEA 276 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeCC-ccCccHHHHHHHHhhcCCCCEE-----ecCCHHHHHHH
Confidence 36799999999999999888877632112 1 235556543 332 233344 5554443211 22355666555
Q ss_pred HHHHhc-CCcEEEEeccc
Q 038733 258 LGEYLM-TKRYLIVLDDV 274 (519)
Q Consensus 258 l~~~L~-~kr~LlVLDDv 274 (519)
+...-. +..=++++|-.
T Consensus 277 l~~l~~~~~~D~VLIDTA 294 (407)
T PRK12726 277 VQYMTYVNCVDHILIDTV 294 (407)
T ss_pred HHHHHhcCCCCEEEEECC
Confidence 544321 23345666654
No 152
>PRK06762 hypothetical protein; Provisional
Probab=95.32 E-value=0.015 Score=52.83 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|.|+|+.|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 153
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.31 E-value=0.028 Score=53.97 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=29.2
Q ss_pred ccchhHH-HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 162 VGLDDRM-EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 162 vGr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.|.++.. ..+.++.. .......+.|+|..|+|||+||+.+++.
T Consensus 22 ~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 22 AGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4554444 33333333 2223567889999999999999999984
No 154
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.31 E-value=0.014 Score=44.82 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998884
No 155
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.26 E-value=0.044 Score=55.95 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=23.5
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.....++|||++|+|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999994
No 156
>PRK09354 recA recombinase A; Provisional
Probab=95.26 E-value=0.063 Score=54.79 Aligned_cols=98 Identities=18% Similarity=0.036 Sum_probs=57.1
Q ss_pred HHHHh-cCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCC
Q 038733 172 LDLLI-EGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKD 250 (519)
Q Consensus 172 ~~~L~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~ 250 (519)
-.+|. .+=+.-+++-|.|+.|+||||||.++... ....=...+|+..-..++... ++.++.....---....+
T Consensus 49 D~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~~----a~~lGvdld~lli~qp~~ 122 (349)
T PRK09354 49 DIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPVY----AKKLGVDIDNLLVSQPDT 122 (349)
T ss_pred HHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHHH----HHHcCCCHHHeEEecCCC
Confidence 34444 33345679999999999999999887653 223335678998877777532 222222100000001123
Q ss_pred HHHHHHHHHHHhcC-CcEEEEecccc
Q 038733 251 YEMKKIILGEYLMT-KRYLIVLDDVW 275 (519)
Q Consensus 251 ~~~l~~~l~~~L~~-kr~LlVLDDv~ 275 (519)
.++....+...++. .--+||+|-|-
T Consensus 123 ~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 123 GEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 45555555555543 45589999874
No 157
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.26 E-value=0.014 Score=51.42 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=19.4
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 158
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.24 E-value=0.091 Score=55.34 Aligned_cols=92 Identities=12% Similarity=0.128 Sum_probs=49.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCC-C-CCcCCCC----CCHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPF-S-MLSKIKD----KDYEMK 254 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~-~-~~~~~~~----~~~~~l 254 (519)
-..++|+|..|+|||||++.+..... ....+++..--..-++.++.. .+....... . ..+.-.. .-....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 45899999999999999998886322 223444443323445555555 444332110 0 0000000 001122
Q ss_pred HHHHHHHh--cCCcEEEEeccccc
Q 038733 255 KIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 255 ~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
...+.+++ +++++|+++||+-.
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHH
Confidence 23344444 47999999999843
No 159
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.24 E-value=0.058 Score=54.37 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=36.9
Q ss_pred cchhHHHHHHHHHhcCC--CcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcC
Q 038733 163 GLDDRMEELLDLLIEGP--TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSP 221 (519)
Q Consensus 163 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs 221 (519)
++........+++..-. ...+-+-++|..|+|||.||.++.+... +..+ .+.+++++
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~ 193 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFP 193 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHH
Confidence 45555555666665321 2346788999999999999999999532 2223 34566553
No 160
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.23 E-value=0.072 Score=51.06 Aligned_cols=73 Identities=11% Similarity=-0.021 Sum_probs=39.9
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCccC-CC-cEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHH
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVKH-YF-DYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIKDKDYEMKKIILGE 260 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~~-~F-~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 260 (519)
+|+|.|..|+||||||+.+... ... .. ..+..++...-+.....+. .- .+. ..+ .....+.+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~--l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~-~~g---~p~~~d~~~l~~~L~~ 73 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL--LSRWPDHPNVELITTDGFLYPNKELIERG-LMD-RKG---FPESYDMEALLKFLKD 73 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEecCcccCcHHHHHHhh-hhh-cCC---CcccCCHHHHHHHHHH
Confidence 5899999999999999999873 321 01 1234555544332222222 11 111 111 1134566677666666
Q ss_pred Hhc
Q 038733 261 YLM 263 (519)
Q Consensus 261 ~L~ 263 (519)
.-.
T Consensus 74 l~~ 76 (220)
T cd02025 74 IKS 76 (220)
T ss_pred HHC
Confidence 655
No 161
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.22 E-value=0.035 Score=54.46 Aligned_cols=54 Identities=17% Similarity=0.098 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc
Q 038733 164 LDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220 (519)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v 220 (519)
+...+..+......=+ +..-+.++|.+|+|||.||.++.+..- +..+ .+.++++
T Consensus 88 ~~~~l~~~~~~~~~~~-~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~ 141 (254)
T COG1484 88 DKKALEDLASLVEFFE-RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA 141 (254)
T ss_pred hHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH
Confidence 4444444443332212 466788999999999999999999533 2222 3455554
No 162
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.22 E-value=0.024 Score=62.45 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=42.5
Q ss_pred CCCCCCccccchhHHHHHHHHHhcCC---CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEGP---TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+..-.+++|-+..++++..|+.... ....++.++|+.|+||||+++.+...
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44556689999999999999997642 23467999999999999999999883
No 163
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.20 E-value=0.1 Score=57.48 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=40.1
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.+++|.+..++.|.+++..+. -..-+-++|+.|+||||+|+.+.+.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 344579999999999999987653 2446778999999999999998873
No 164
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.19 E-value=0.015 Score=53.81 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=24.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIP 219 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~ 219 (519)
..-+.++|..|+|||.||..+.+.. +...+ .+.|++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEee
Confidence 4568899999999999999998742 22222 345665
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.09 E-value=0.055 Score=57.49 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=43.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIKDKDYEMKKIILGE 260 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 260 (519)
..-+-|+|..|+|||+|++++.+. +...--.+++++ ...+.. +...+... . ...++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~----------~----~~~f~~ 198 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG----------E----MQRFRQ 198 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc----------h----HHHHHH
Confidence 456889999999999999999994 322222234443 334444 55554321 1 122333
Q ss_pred HhcCCcEEEEecccccC
Q 038733 261 YLMTKRYLIVLDDVWST 277 (519)
Q Consensus 261 ~L~~kr~LlVLDDv~~~ 277 (519)
.+.. .-+|++||+...
T Consensus 199 ~~~~-~dvLiIDDiq~l 214 (445)
T PRK12422 199 FYRN-VDALFIEDIEVF 214 (445)
T ss_pred Hccc-CCEEEEcchhhh
Confidence 3333 347888998654
No 166
>PRK06526 transposase; Provisional
Probab=95.09 E-value=0.03 Score=54.87 Aligned_cols=24 Identities=17% Similarity=-0.029 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-+.++|++|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 346889999999999999999874
No 167
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.08 E-value=0.019 Score=53.07 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 168
>PRK06921 hypothetical protein; Provisional
Probab=95.05 E-value=0.021 Score=56.33 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=27.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCC-CcEEEEEEc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHY-FDYLAWIPS 220 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~-F~~~~wv~v 220 (519)
..-+.++|..|+|||+||.++.+. +... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 567889999999999999999994 4333 234566654
No 169
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.04 E-value=0.016 Score=54.48 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999977
No 170
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.058 Score=59.51 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999988887653 2456678999999999999998873
No 171
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.13 Score=56.23 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=38.5
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999998653 3446789999999999999998873
No 172
>PRK09183 transposase/IS protein; Provisional
Probab=94.99 E-value=0.079 Score=52.12 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=20.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+.|+|+.|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999773
No 173
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.93 E-value=0.16 Score=53.76 Aligned_cols=88 Identities=18% Similarity=0.086 Sum_probs=46.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC--HHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD--ADQILD-IVTVILLPFSMLSKIKDKDYEMKKII 257 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~--~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~ 257 (519)
...+|.++|.+|+||||.+..+..... +..+ .+.-|+. +.+. ..+-++ +...++.+.... ....+.......
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~-D~~R~aa~eQL~~la~~~gvp~~~~--~~~~d~~~i~~~ 168 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAA-DTYRPAAYDQLKQLAEKIGVPFYGD--PDNKDAVEIAKE 168 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecC-CCCCHHHHHHHHHHHHHcCCcEEec--CCccCHHHHHHH
Confidence 467999999999999999988876322 1223 2333333 2233 244455 666655422100 011233333333
Q ss_pred HHHHhcCCcEEEEeccc
Q 038733 258 LGEYLMTKRYLIVLDDV 274 (519)
Q Consensus 258 l~~~L~~kr~LlVLDDv 274 (519)
..+.+.+. -++|+|..
T Consensus 169 al~~~~~~-DvVIIDTA 184 (437)
T PRK00771 169 GLEKFKKA-DVIIVDTA 184 (437)
T ss_pred HHHHhhcC-CEEEEECC
Confidence 33333444 46777776
No 174
>PRK10867 signal recognition particle protein; Provisional
Probab=94.93 E-value=0.15 Score=53.87 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=20.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|.++|.+|+||||.+..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999997766655
No 175
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.91 E-value=0.21 Score=46.35 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 170 ELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+.+.+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~ 37 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKA 37 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455554432 2367889999999999999888773
No 176
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.91 E-value=0.036 Score=58.71 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=37.2
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|+++.++.+...+..+. -+-+.|++|+|||+||+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 358999999999998887654 5778999999999999999884
No 177
>PRK03839 putative kinase; Provisional
Probab=94.88 E-value=0.021 Score=52.79 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.1
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999983
No 178
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.85 E-value=0.089 Score=56.88 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=36.2
Q ss_pred CCCCCccccchhHHHHHHHHHh---cC-------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 155 SSKNRNMVGLDDRMEELLDLLI---EG-------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...-.+++|.+..++++.+++. .. ....+-+-++|++|+|||+||+.+.+.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3444578898887776665543 21 112345778999999999999999984
No 179
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.83 E-value=0.17 Score=53.32 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=20.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...++.++|.+|+||||.|..+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999998776665
No 180
>CHL00176 ftsH cell division protein; Validated
Probab=94.83 E-value=0.041 Score=60.90 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=35.2
Q ss_pred CCCccccchhHHHHHHHHH---hcCC-------CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLL---IEGP-------TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.++.|.++.++++.+.+ .... ...+-+.++|++|+|||+||+.+.+.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456888877776665554 3221 12446889999999999999999984
No 181
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.82 E-value=0.026 Score=53.56 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.4
Q ss_pred HHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 174 LLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 174 ~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
|+.++....++|.|+|++|+|||||++.+...
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 44455567889999999999999999999763
No 182
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.81 E-value=0.11 Score=47.55 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=19.1
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988876
No 183
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.78 E-value=0.18 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.3
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..++|+++|.+|+||||++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999988876
No 184
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.068 Score=58.23 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=44.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHH---
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIIL--- 258 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l--- 258 (519)
..-|-|.|..|+|||+||+++++... +.+.-++..|+.+.- .....+..+..+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l-----------------------~~~~~e~iQk~l~~v 486 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTL-----------------------DGSSLEKIQKFLNNV 486 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhc-----------------------cchhHHHHHHHHHHH
Confidence 45678899999999999999999533 333334445554321 111122333332
Q ss_pred -HHHhcCCcEEEEeccccc
Q 038733 259 -GEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 259 -~~~L~~kr~LlVLDDv~~ 276 (519)
.+.+.....+|||||+..
T Consensus 487 fse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 487 FSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHHHhhCCcEEEEcchhh
Confidence 333455788999999963
No 185
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.75 E-value=0.051 Score=47.58 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 166 DRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
++.+++-+.|...-..-.+|.+.|.-|.|||||++.+....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34445555554322235589999999999999999999853
No 186
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.74 E-value=0.036 Score=62.58 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=37.5
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+.++||++++.++++.|.... ..-+.++|.+|+|||++|+.+...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999998753 223357999999999999998873
No 187
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.21 Score=53.67 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.+..
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468899999999999997753 245667899999999999998876
No 188
>PRK04040 adenylate kinase; Provisional
Probab=94.65 E-value=0.028 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999988
No 189
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.64 E-value=0.15 Score=58.80 Aligned_cols=47 Identities=13% Similarity=0.247 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHHHHhcC-------CCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEG-------PTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...++|.+..++.+...+... +....++.++|+.|+|||+||+.+.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999998888632 12235788999999999999999987
No 190
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.64 E-value=0.028 Score=51.79 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.6
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
No 191
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.62 E-value=0.16 Score=57.88 Aligned_cols=46 Identities=20% Similarity=0.113 Sum_probs=38.4
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998654 2356789999999999999998774
No 192
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.62 E-value=0.043 Score=51.67 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=45.7
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcC-CCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHHH
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSP-YHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGEY 261 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs-~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 261 (519)
.+|.|+|+.|.||||++..+.. ........++++--. ..+.......++.+- + ...+.......++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~--------~-vg~~~~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIEDPIEFVHESKRSLINQR--------E-VGLDTLSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEcCCccccccCccceeeec--------c-cCCCccCHHHHHHHH
Confidence 4789999999999999998777 333333444443221 111100000011100 0 011123345566777
Q ss_pred hcCCcEEEEecccccCC
Q 038733 262 LMTKRYLIVLDDVWSTD 278 (519)
Q Consensus 262 L~~kr~LlVLDDv~~~~ 278 (519)
+....=.+++|.+.+.+
T Consensus 71 Lr~~pd~ii~gEird~e 87 (198)
T cd01131 71 LRQDPDVILVGEMRDLE 87 (198)
T ss_pred hcCCcCEEEEcCCCCHH
Confidence 76666688999986654
No 193
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.59 E-value=0.024 Score=52.79 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=20.3
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 194
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.59 E-value=0.1 Score=54.37 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=38.9
Q ss_pred CccccchhHHHHHHHHHhcC------------CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC
Q 038733 159 RNMVGLDDRMEELLDLLIEG------------PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF 212 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F 212 (519)
..++|.++.++.+.-.+... +...+-|.++|++|+||||+|+.+.. .....|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeE
Confidence 45889999888887666542 11246788999999999999999988 444444
No 195
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.58 E-value=0.028 Score=51.78 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=20.7
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
++|.|+|+.|+|||||++.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999988
No 196
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.51 E-value=0.16 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=19.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+++.++|++|+||||++..+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999998877655
No 197
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.51 E-value=0.37 Score=52.68 Aligned_cols=122 Identities=14% Similarity=0.052 Sum_probs=82.8
Q ss_pred CCCccccchhHHHHHHHHHhcC--C-CcceEEEeeCCCCCCHHHHHHHHHhccC------ccCCCcEEEEEEcCCCCCHH
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG--P-TQLSVVAIPDSIGLDKTIFTAEAYNSSY------VKHYFDYLAWIPSPYHYDAD 227 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~-~~~~vi~I~G~gGvGKTtLA~~v~~~~~------v~~~F~~~~wv~vs~~~~~~ 227 (519)
.+..+-+|+.+..+|...+... + ..-+.+-|.|.+|.|||..+..|-+..+ --..|+. +.++.-.-....
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPR 472 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHH
Confidence 3445678999999999988652 2 3445888999999999999999887421 1223433 344444445688
Q ss_pred HHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhc-----CCcEEEEecccccC-----------CCC---CCceEEE
Q 038733 228 QILD-IVTVILLPFSMLSKIKDKDYEMKKIILGEYLM-----TKRYLIVLDDVWST-----------DLK---DGENIRL 287 (519)
Q Consensus 228 ~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LlVLDDv~~~-----------~~w---~gs~iiv 287 (519)
++.. |...+.+..- ......+.|..++. .+.+++++|.+... .+| ++||++|
T Consensus 473 ~~Y~~I~~~lsg~~~--------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV--------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred HHHHHHHHhcccCcc--------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 9999 9999987542 33444555555553 35678888876432 367 8999888
No 198
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.50 E-value=0.046 Score=50.06 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=33.5
Q ss_pred cccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 161 MVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++|....+.++++.+..-.....-|-|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888888753222345559999999999999999994
No 199
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.50 E-value=0.11 Score=59.65 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=38.7
Q ss_pred CCCccccchhHHHHHHHHHhcC-------CCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG-------PTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-...++|.+..++.+.+.+... .....++.++|+.|+|||.||+.+..
T Consensus 564 L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 564 LAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred hcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999988531 22356789999999999999998876
No 200
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.47 E-value=0.03 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=22.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|+|-||=|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 568999999999999999999994
No 201
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.45 E-value=0.052 Score=51.03 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=22.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
....|+|+|.+|+|||||.+.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 36789999999999999999998863
No 202
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.43 E-value=0.27 Score=48.94 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=48.5
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCC-CCc-CCCCCCHHHHHHH
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFS-MLS-KIKDKDYEMKKII 257 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~-~~~-~~~~~~~~~l~~~ 257 (519)
.+..++.|+|..|.|||||...+.+ .........+. .....+..+.. .+...+.+.- ... ...-.+...+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~~VI--~gD~~t~~Da~-rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPCAVI--EGDQQTVNDAA-RIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCEEEE--CCCcCcHHHHH-HHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 4699999999999999999999988 44333333222 22222222222 2233222110 000 0112334455555
Q ss_pred HHHHhcCCcEEEEeccccc
Q 038733 258 LGEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 258 l~~~L~~kr~LlVLDDv~~ 276 (519)
+...-...--++++++|-+
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 5554444445677788753
No 203
>PRK00625 shikimate kinase; Provisional
Probab=94.42 E-value=0.031 Score=51.43 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=19.3
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.|.++||+|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 204
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.42 E-value=0.17 Score=53.18 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=51.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC-HHHHHH-HHHHhcCCCCC-CcCCCCCC------HH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD-ADQILD-IVTVILLPFSM-LSKIKDKD------YE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~-il~~l~~~~~~-~~~~~~~~------~~ 252 (519)
-..++|+|..|+|||||++.+.+. . ..+..+.+-+++... +.++.. ++..-...... --...+.. ..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~--~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--T--TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--C--CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 468999999999999999999873 2 125666676766543 233444 43321111000 00000111 11
Q ss_pred HHHHHHHHHh--cCCcEEEEeccccc
Q 038733 253 MKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 253 ~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
...-.+.+++ +++++|+++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1223345555 58999999999843
No 205
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.41 E-value=0.04 Score=50.63 Aligned_cols=24 Identities=17% Similarity=0.015 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|.|+|++|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999999884
No 206
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.40 E-value=0.029 Score=51.93 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 207
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.39 E-value=0.097 Score=54.52 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=37.9
Q ss_pred CCccccchhHHHHHHHHHhcC------------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEG------------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...++|.++.++.+..++... +....-|.++|++|+||||||+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999998888541 112467899999999999999999883
No 208
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.39 E-value=0.14 Score=58.19 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=36.6
Q ss_pred CCCccccchhHHHHHHHHHhcC-----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG-----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.++.|.+..++.|.+.+.-. -...+-+.++|++|+|||+||+++.+.
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3456788888888887766421 112445788999999999999999993
No 209
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.35 E-value=0.35 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=20.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..++|.++|++|+||||.+..+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877765
No 210
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.34 E-value=0.056 Score=51.73 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|..|+|||||++.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 211
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.28 E-value=0.039 Score=50.24 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|.++|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458899999999999999999883
No 212
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.27 E-value=0.11 Score=56.94 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=37.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVIL 237 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~ 237 (519)
.-++.-.+|++|+||||||..|.++.-. .++=++.|+.-....+-. |...+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~avq 377 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAVQ 377 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHHh
Confidence 5689999999999999999999984222 245667777666666555 555444
No 213
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.27 E-value=0.11 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.114 Sum_probs=20.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..++.++|++|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999988875
No 214
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.26 E-value=0.24 Score=57.14 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHHHHhcC------C-CcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEG------P-TQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...++|.+..++.+.+.+... + ....++.++|+.|+|||++|+.+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999988752 1 1245788999999999999999987
No 215
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.25 E-value=0.033 Score=49.16 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=19.6
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+|.|.|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 216
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.24 E-value=0.032 Score=51.51 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=19.4
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 217
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.23 E-value=0.037 Score=52.18 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999883
No 218
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.22 E-value=0.14 Score=54.39 Aligned_cols=93 Identities=11% Similarity=0.137 Sum_probs=54.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC-HHHHHH-HHHHhcCCCCC-CcCCCCC------CHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD-ADQILD-IVTVILLPFSM-LSKIKDK------DYE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~-il~~l~~~~~~-~~~~~~~------~~~ 252 (519)
-.-++|.|..|+|||||+..+.+.... .+-+.++++-+++..+ +.++.. +...-...... --...+. ...
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 457899999999999999888774332 2567888887776433 344444 44321110000 0000011 112
Q ss_pred HHHHHHHHHh---cCCcEEEEecccc
Q 038733 253 MKKIILGEYL---MTKRYLIVLDDVW 275 (519)
Q Consensus 253 ~l~~~l~~~L---~~kr~LlVLDDv~ 275 (519)
.....+.+++ +++++|+++||+-
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccch
Confidence 2334456666 3799999999984
No 219
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.21 E-value=0.18 Score=52.90 Aligned_cols=71 Identities=11% Similarity=-0.029 Sum_probs=41.7
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGEYLM 263 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~ 263 (519)
++.|.|+.++|||||++.+... ..+. .+++..-+... ......+....+.+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~---------------------~~~~l~d~~~~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRL---------------------DRIELLDLLRAYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhc---------------------chhhHHHHHHHHHHhhc
Confidence 9999999999999999777663 2222 44444321110 00011111111111112
Q ss_pred CCcEEEEecccccCCCC
Q 038733 264 TKRYLIVLDDVWSTDLK 280 (519)
Q Consensus 264 ~kr~LlVLDDv~~~~~w 280 (519)
.++.+|+||.|.....|
T Consensus 93 ~~~~yifLDEIq~v~~W 109 (398)
T COG1373 93 REKSYIFLDEIQNVPDW 109 (398)
T ss_pred cCCceEEEecccCchhH
Confidence 27789999999999999
No 220
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.21 E-value=0.17 Score=49.76 Aligned_cols=94 Identities=16% Similarity=0.084 Sum_probs=54.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCc--cCCCcEEEEEEcCCCCC-HHHHHH-HHHHhcCCC-----CCCcCCC--CCC
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYV--KHYFDYLAWIPSPYHYD-ADQILD-IVTVILLPF-----SMLSKIK--DKD 250 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v--~~~F~~~~wv~vs~~~~-~~~l~~-il~~l~~~~-----~~~~~~~--~~~ 250 (519)
-.-++|.|-.|+|||||+..+.++..+ +.+-+.++++-+++... ..++.. +...-.... ...++.. -.-
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 456799999999999999998875431 22357788998887643 445555 443211110 0000000 001
Q ss_pred HHHHHHHHHHHhc---CCcEEEEecccc
Q 038733 251 YEMKKIILGEYLM---TKRYLIVLDDVW 275 (519)
Q Consensus 251 ~~~l~~~l~~~L~---~kr~LlVLDDv~ 275 (519)
.......+.++++ ++++|+++||+-
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1122334556653 689999999984
No 221
>PRK13947 shikimate kinase; Provisional
Probab=94.21 E-value=0.036 Score=50.58 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.5
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 222
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.20 E-value=0.079 Score=46.48 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=30.9
Q ss_pred EEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 185 VAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
|-++|.+|+|||+||+.+..- ... ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEecccccccccee
Confidence 568999999999999999883 311 233467788888888776
No 223
>PRK06217 hypothetical protein; Validated
Probab=94.20 E-value=0.036 Score=51.37 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=20.2
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.|.|.|.+|+||||+|+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999984
No 224
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.19 E-value=0.06 Score=49.91 Aligned_cols=37 Identities=8% Similarity=0.067 Sum_probs=29.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v 220 (519)
.++|.|+|+.|+|||||++.+.. .....|...++.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 46899999999999999999998 56667765555543
No 225
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.19 E-value=0.038 Score=49.00 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=26.9
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCC
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPY 222 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~ 222 (519)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999942 224555555555543
No 226
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.19 E-value=0.042 Score=48.44 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999883
No 227
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.19 E-value=0.059 Score=58.31 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=27.0
Q ss_pred HHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 172 LDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 172 ~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+.|........+|+|.|..|.||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 444444545688999999999999999999987
No 228
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.15 E-value=0.2 Score=51.89 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCC
Q 038733 169 EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKD 248 (519)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~ 248 (519)
.++-..|..+=..-.++.|.|.+|+|||||+..+... ....-..++|++... +..++..-+..++.......-...
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE--s~~qi~~Ra~rlg~~~~~l~l~~e 144 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE--SPEQIKLRADRLGISTENLYLLAE 144 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc--CHHHHHHHHHHcCCCcccEEEEcc
Confidence 3344444443234579999999999999999888763 222224567776543 333433334444432210000112
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEecccc
Q 038733 249 KDYEMKKIILGEYLMTKRYLIVLDDVW 275 (519)
Q Consensus 249 ~~~~~l~~~l~~~L~~kr~LlVLDDv~ 275 (519)
.+.+.+...+. ..+.-++|+|.+.
T Consensus 145 ~~le~I~~~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 145 TNLEDILASIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred CcHHHHHHHHH---hcCCcEEEEcchH
Confidence 33444444443 2356689999874
No 229
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.08 E-value=0.046 Score=50.15 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999873
No 230
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.08 E-value=0.15 Score=53.64 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=51.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC-HHHHHH-HHHHhcCCCCC-CcCCCCCC------H
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD-ADQILD-IVTVILLPFSM-LSKIKDKD------Y 251 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~-il~~l~~~~~~-~~~~~~~~------~ 251 (519)
.-..++|+|..|+|||||++.+.+... -+..+.+-+++... ..++.. .+..-+..... --...+.. .
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 356889999999999999999998432 24555666665443 223333 33321110000 00001111 1
Q ss_pred HHHHHHHHHHh--cCCcEEEEeccccc
Q 038733 252 EMKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 252 ~~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
....-.+.+++ +++++|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 12223345555 58999999999843
No 231
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.06 E-value=0.047 Score=46.24 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEeeCCCCCCHHHHHHHHHhccC
Q 038733 185 VAIPDSIGLDKTIFTAEAYNSSY 207 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~~~ 207 (519)
|.|+|..|+|||||.+.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 67999999999999999987643
No 232
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.04 E-value=0.19 Score=53.21 Aligned_cols=94 Identities=13% Similarity=0.217 Sum_probs=53.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC-HHHHHH-HHHHhcCCCCC-CcCCCCCC------HH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD-ADQILD-IVTVILLPFSM-LSKIKDKD------YE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~-il~~l~~~~~~-~~~~~~~~------~~ 252 (519)
-.-++|.|..|+|||||+..+......... +.++++-+++... +.++.. ++..-...... --...+.. ..
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~-~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHG-GYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCC-CEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 457899999999999999987654222111 4577777766443 344555 44321111000 00001111 11
Q ss_pred HHHHHHHHHh---cCCcEEEEeccccc
Q 038733 253 MKKIILGEYL---MTKRYLIVLDDVWS 276 (519)
Q Consensus 253 ~l~~~l~~~L---~~kr~LlVLDDv~~ 276 (519)
...-.+.+++ +++++||++||+-.
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHH
Confidence 2234466666 67999999999853
No 233
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.03 E-value=0.26 Score=56.66 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=37.3
Q ss_pred CCccccchhHHHHHHHHHhcC-------CCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEG-------PTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...++|-+..++.+.+.+... +.....+-++|+.|+|||+||+.+.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 467899999999998887632 12245667899999999999999887
No 234
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.02 E-value=0.052 Score=51.02 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=22.6
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
....+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 235
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.01 E-value=0.039 Score=49.20 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=19.5
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999999883
No 236
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.96 E-value=0.091 Score=53.31 Aligned_cols=49 Identities=10% Similarity=0.233 Sum_probs=42.8
Q ss_pred CCCCccccchhHHHHHHHHHhcC----CCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEG----PTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.....++|.++.++++++.+... +..-+|+-.+|+.|.||||||..+.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999763 45678999999999999999999887
No 237
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.96 E-value=0.046 Score=50.26 Aligned_cols=23 Identities=4% Similarity=0.089 Sum_probs=20.9
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 238
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.3 Score=53.66 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|-+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 468898888888888887643 2467778999999999999998874
No 239
>CHL00181 cbbX CbbX; Provisional
Probab=93.93 E-value=0.096 Score=52.36 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=31.8
Q ss_pred ccccchhHHHHHHHHHh---cC----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 160 NMVGLDDRMEELLDLLI---EG----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~---~~----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+++|.+..+++|.++.. -. ......+.++|.+|+||||+|+.+++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 58888777776655431 11 112334778999999999999999773
No 240
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.24 Score=49.36 Aligned_cols=80 Identities=11% Similarity=0.073 Sum_probs=48.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCc--cCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYV--KHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILG 259 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v--~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 259 (519)
-++|-++|++|.|||+|.+++++.-.+ .+.|.....+.+. -..+.. ..-.. .......+.+++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFS---KWFsE-------SgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFS---KWFSE-------SGKLVAKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHH---HHHhh-------hhhHHHHHHHHHH
Confidence 578999999999999999999996433 3445444444443 122222 11111 1234566777777
Q ss_pred HHhcCCcEE--EEecccc
Q 038733 260 EYLMTKRYL--IVLDDVW 275 (519)
Q Consensus 260 ~~L~~kr~L--lVLDDv~ 275 (519)
+.+.++..| +.+|.|.
T Consensus 243 ELv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHHhCCCcEEEEEeHHHH
Confidence 777776543 4457664
No 241
>PRK05439 pantothenate kinase; Provisional
Probab=93.90 E-value=0.084 Score=53.11 Aligned_cols=81 Identities=9% Similarity=0.059 Sum_probs=45.2
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhccCccCCC--cEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF--DYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKII 257 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F--~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~ 257 (519)
...-+|+|.|.+|+||||+|+.+.. ...... ..+.-+++..=+-....+. -..+....+. ....|.+.+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~-~~~l~~~kg~---Pes~D~~~l~~~ 157 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLE-ERGLMKRKGF---PESYDMRALLRF 157 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHh-hhhccccCCC---cccccHHHHHHH
Confidence 4577999999999999999998877 332211 2233444433222222111 0011111111 234577777777
Q ss_pred HHHHhcCCc
Q 038733 258 LGEYLMTKR 266 (519)
Q Consensus 258 l~~~L~~kr 266 (519)
|.....++.
T Consensus 158 L~~Lk~G~~ 166 (311)
T PRK05439 158 LSDVKSGKP 166 (311)
T ss_pred HHHHHcCCC
Confidence 777777765
No 242
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.89 E-value=0.048 Score=47.23 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=23.1
Q ss_pred EEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 185 VAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
|-++|.+|+||||+|+.+.. .....|.. |....+..+.+|+.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R---Iq~tpdllPsDi~G 43 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR---IQFTPDLLPSDILG 43 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE---EE--TT--HHHHHE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE---EEecCCCCccccee
Confidence 56899999999999999998 56666743 22233344445443
No 243
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.88 E-value=0.17 Score=55.32 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=29.2
Q ss_pred cccchhH--HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 161 MVGLDDR--MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 161 ~vGr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++|-... ......+..........+.|+|..|+|||.|++++.+.
T Consensus 291 vvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~ 337 (617)
T PRK14086 291 VIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHY 337 (617)
T ss_pred cCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4565443 22333333332223445899999999999999999994
No 244
>PRK08149 ATP synthase SpaL; Validated
Probab=93.88 E-value=0.22 Score=52.26 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=50.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCC-CCHHHHHH-HHHHhcCCCC----CCcCCCC---CCHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYH-YDADQILD-IVTVILLPFS----MLSKIKD---KDYE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~-~~~~~l~~-il~~l~~~~~----~~~~~~~---~~~~ 252 (519)
-..++|+|..|+|||||++.+.+.... +..+...+... -+..++.. .+........ .+.+... ....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 458899999999999999999874222 33333444432 34445555 5543221110 0000000 0112
Q ss_pred HHHHHHHHHh--cCCcEEEEeccccc
Q 038733 253 MKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 253 ~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.....+.+++ ++|++||++||+-.
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHH
Confidence 2233344444 58999999999854
No 245
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.86 E-value=0.2 Score=51.07 Aligned_cols=21 Identities=5% Similarity=-0.013 Sum_probs=18.6
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
+.+.|+.|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999874
No 246
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.85 E-value=0.049 Score=50.64 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.7
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999774
No 247
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.81 E-value=0.053 Score=54.11 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=44.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCC--cEEEEEEcCCCCCHHHHHHHHHHhcC--CCCCCcCCCCCCHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF--DYLAWIPSPYHYDADQILDIVTVILL--PFSMLSKIKDKDYEMKKI 256 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F--~~~~wv~vs~~~~~~~l~~il~~l~~--~~~~~~~~~~~~~~~l~~ 256 (519)
...+|||.|..|+||||+|+.+.. ...... ..+..++...-......+. ..+. ..+ .....+...+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~---~~g~~~~~g---~P~s~D~~~l~~ 132 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLK---ERNLMKKKG---FPESYDMHRLVK 132 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHH---HcCCccccC---CChhccHHHHHH
Confidence 467999999999999999987755 222111 1234444443332222222 1111 111 124567777777
Q ss_pred HHHHHhcCCc
Q 038733 257 ILGEYLMTKR 266 (519)
Q Consensus 257 ~l~~~L~~kr 266 (519)
.+...-.++.
T Consensus 133 ~L~~Lk~g~~ 142 (290)
T TIGR00554 133 FLSDLKSGKP 142 (290)
T ss_pred HHHHHHCCCC
Confidence 7777766653
No 248
>PRK04296 thymidine kinase; Provisional
Probab=93.80 E-value=0.079 Score=49.53 Aligned_cols=84 Identities=12% Similarity=-0.070 Sum_probs=44.9
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHHH
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIKDKDYEMKKIILGEY 261 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 261 (519)
.++-|+|..|.||||+|...... ...+-..++.+. ..++...... +++.++.... ........++...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~---~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSRE---AIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCccc---ceEeCChHHHHHHHHh-
Confidence 46788999999999999777663 322222333331 2223233233 5555543211 0111234555555555
Q ss_pred hcCCcEEEEeccc
Q 038733 262 LMTKRYLIVLDDV 274 (519)
Q Consensus 262 L~~kr~LlVLDDv 274 (519)
..++--+||+|.+
T Consensus 75 ~~~~~dvviIDEa 87 (190)
T PRK04296 75 EGEKIDCVLIDEA 87 (190)
T ss_pred hCCCCCEEEEEcc
Confidence 3334458999987
No 249
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.79 E-value=0.23 Score=52.97 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=53.7
Q ss_pred ceEEEeeCCCCCCHHHHH-HHHHhccCc-----cCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCC--cCCCCCC--
Q 038733 182 LSVVAIPDSIGLDKTIFT-AEAYNSSYV-----KHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSML--SKIKDKD-- 250 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA-~~v~~~~~v-----~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~--~~~~~~~-- 250 (519)
-.-++|.|-.|+|||||| -.|.|...+ .++-+.++++-+++..+.-.-+. .+++-+.-.... ....+..
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 457899999999999997 666665422 13445788899887755332233 444433111000 0000000
Q ss_pred ----HHHHHHHHHHHh--cCCcEEEEeccccc
Q 038733 251 ----YEMKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 251 ----~~~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.......+.+++ +++..|+|+||+..
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 011223344444 57999999999964
No 250
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.77 E-value=0.16 Score=50.32 Aligned_cols=89 Identities=18% Similarity=0.128 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCC
Q 038733 169 EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIK 247 (519)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~ 247 (519)
..+++.+... -+-+-++|+.|+|||++++....... ...| ...-++.+.......+++ |-..+..... .
T Consensus 23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~-----~ 92 (272)
T PF12775_consen 23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG-----R 92 (272)
T ss_dssp HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT-----E
T ss_pred HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC-----C
Confidence 4556666554 34567899999999999999876311 1122 233455555444444444 3222221111 0
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEecccccC
Q 038733 248 DKDYEMKKIILGEYLMTKRYLIVLDDVWST 277 (519)
Q Consensus 248 ~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~ 277 (519)
.. .--.+|+.++.+||+.-.
T Consensus 93 ~~----------gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 93 VY----------GPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp EE----------EEESSSEEEEEEETTT-S
T ss_pred CC----------CCCCCcEEEEEecccCCC
Confidence 00 001368999999999644
No 251
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.77 E-value=0.042 Score=46.16 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.1
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999997773
No 252
>PRK13975 thymidylate kinase; Provisional
Probab=93.76 E-value=0.056 Score=50.50 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999983
No 253
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.76 E-value=0.17 Score=49.81 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHH
Q 038733 166 DRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQIL 230 (519)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~ 230 (519)
.-.+++..++..+ .-+-+.|.+|+|||+||+.+.. ..... .+.++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEeCCccCCHHHHh
Confidence 3445555555542 2455899999999999999987 33222 3445555555544443
No 254
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.74 E-value=0.14 Score=51.69 Aligned_cols=90 Identities=17% Similarity=0.105 Sum_probs=51.6
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGE 260 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 260 (519)
.-+++-|.|..|+||||||-.+.. ..+..-..++|+.....++...... ++.....---..+...++....+..
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a~~----lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYAES----LGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHHHH----TT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHHHh----cCccccceEEecCCcHHHHHHHHHH
Confidence 457999999999999999988877 3444445788999988887655433 2221100000011234555555555
Q ss_pred HhcC-CcEEEEeccccc
Q 038733 261 YLMT-KRYLIVLDDVWS 276 (519)
Q Consensus 261 ~L~~-kr~LlVLDDv~~ 276 (519)
.++. .--++|+|.|-.
T Consensus 126 lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHTTSESEEEEE-CTT
T ss_pred HhhcccccEEEEecCcc
Confidence 5644 345888898744
No 255
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.44 Score=50.52 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=47.9
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHH
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILG 259 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 259 (519)
..+..+.+.|++|+|||+||..+.. ...|+.+--++.- +....++..-...++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe-----------------------~miG~sEsaKc~~i~ 588 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPE-----------------------DMIGLSESAKCAHIK 588 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChH-----------------------HccCccHHHHHHHHH
Confidence 3566777889999999999998876 3457654333211 112223333334444
Q ss_pred HHh----cCCcEEEEecccccCCCC
Q 038733 260 EYL----MTKRYLIVLDDVWSTDLK 280 (519)
Q Consensus 260 ~~L----~~kr~LlVLDDv~~~~~w 280 (519)
+.+ +..-..||+||+..--+|
T Consensus 589 k~F~DAYkS~lsiivvDdiErLiD~ 613 (744)
T KOG0741|consen 589 KIFEDAYKSPLSIIVVDDIERLLDY 613 (744)
T ss_pred HHHHHhhcCcceEEEEcchhhhhcc
Confidence 443 456678999999988888
No 256
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.71 E-value=0.069 Score=48.09 Aligned_cols=36 Identities=11% Similarity=-0.118 Sum_probs=26.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIP 219 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~ 219 (519)
..||=|.|.+|.||||||+.+.. +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 35888999999999999999998 4444334445553
No 257
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.71 E-value=0.4 Score=48.35 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=36.8
Q ss_pred ccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 160 NMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.++|-+....++..+......-..-+-+.|+.|+||||+|..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~ 47 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE 47 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH
Confidence 4677888888899888865433445889999999999999888774
No 258
>PRK04328 hypothetical protein; Provisional
Probab=93.71 E-value=0.29 Score=47.80 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=37.2
Q ss_pred HHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHh
Q 038733 172 LDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVI 236 (519)
Q Consensus 172 ~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l 236 (519)
-++|..+=..-+++.|.|.+|.|||+||..+... ..+. -...+|++... +..++.+.++++
T Consensus 13 D~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~~~-ge~~lyis~ee--~~~~i~~~~~~~ 73 (249)
T PRK04328 13 DEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GLQM-GEPGVYVALEE--HPVQVRRNMRQF 73 (249)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HHhc-CCcEEEEEeeC--CHHHHHHHHHHc
Confidence 3344443234679999999999999999875442 2222 34577887655 334444433433
No 259
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.70 E-value=0.24 Score=55.81 Aligned_cols=100 Identities=18% Similarity=0.058 Sum_probs=58.9
Q ss_pred HHHHHHh-cCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCC
Q 038733 170 ELLDLLI-EGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKD 248 (519)
Q Consensus 170 ~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~ 248 (519)
.|-.+|. .+=..-+++-|.|..|+|||||+..+... ....=..++|+.....++.. .+++++......--...
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~----~A~~lGvDl~~llv~~~ 120 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD----YAKKLGVDTDSLLVSQP 120 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH----HHHHcCCChhHeEEecC
Confidence 3344454 33345778889999999999999664442 21222457899887777743 44444432110001122
Q ss_pred CCHHHHHHHHHHHhcC-CcEEEEecccc
Q 038733 249 KDYEMKKIILGEYLMT-KRYLIVLDDVW 275 (519)
Q Consensus 249 ~~~~~l~~~l~~~L~~-kr~LlVLDDv~ 275 (519)
.+.+.....+...++. +--|||+|.+-
T Consensus 121 ~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 121 DTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred CCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 2345566666666644 55589999985
No 260
>PRK13949 shikimate kinase; Provisional
Probab=93.69 E-value=0.055 Score=49.58 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=20.1
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-|.|+|+.|+||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999883
No 261
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.69 E-value=0.59 Score=41.70 Aligned_cols=107 Identities=7% Similarity=0.111 Sum_probs=76.6
Q ss_pred cchHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHcHhhhHHhhhhcCCCC-CCCChhHHHHHHHHHHH
Q 038733 2 DISFRLFSERLGRVLAGEEVTLPDAAKLPIQNLHAEVEIVTSWLSEFEDDMSWLLLQKIGGG-EIDDPDLGNIMDEINCF 80 (519)
Q Consensus 2 ~a~v~~~~~kl~~~l~~~e~~~~~~~~~~~~~L~~eL~~i~~~l~~a~~~~~~~~~~~~e~~-~~~~~~~~~Wl~~lr~~ 80 (519)
+||++.+++.|...+. +.......++.-+++|...++.|.-++.+. +.. ..-+..-+.-++++.+.
T Consensus 8 gaalG~~~~eLlk~v~-~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI------------~~~~~eld~~~~ee~e~L~~~ 74 (147)
T PF05659_consen 8 GAALGAVFGELLKAVI-DASKKSLSFKSILKRLESTLESIIPIIKEI------------DKLNVELDRPRQEEIERLKEL 74 (147)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhhhHHHHH------------HHHhhhcCCchhHHHHHHHHH
Confidence 5788888888888888 777888888899999999999999999998 433 22333336778899999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCccccchhhhHHHHHHHHHHHHHHHHHHHh
Q 038733 81 TYESEMVIDTFINSINEHKSQSSCSKDIYDALQGLQSRITKIKQRVQQLKH 131 (519)
Q Consensus 81 aydaeD~lDe~~~~~~~~~~g~~~~~~~~~~~~~i~~~i~~i~~~l~~i~~ 131 (519)
..+++++++.|..-.. +.+++. ++.+++|+++.+.+....+
T Consensus 75 L~~g~~LV~k~sk~~r---------~n~~kk-~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 75 LEKGKELVEKCSKVRR---------WNLYKK-PRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHHhccccH---------HHHHhh-HhHHHHHHHHHHHHHHHhc
Confidence 9999999988854210 111111 4556666666666655433
No 262
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.67 E-value=0.054 Score=48.30 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=18.8
Q ss_pred EEeeCCCCCCHHHHHHHHHh
Q 038733 185 VAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~ 204 (519)
|.++|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 263
>PRK06620 hypothetical protein; Validated
Probab=93.65 E-value=0.12 Score=49.33 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=31.4
Q ss_pred CCCCccccc-hh-HHHHHHHHHhcCCCcc--eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGL-DD-RMEELLDLLIEGPTQL--SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr-~~-~~~~l~~~L~~~~~~~--~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++-++|- .. ....+.++-.....+. +.+-|+|+.|+|||+|++.+.+.
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhc
Confidence 345556775 33 2333344332111112 66899999999999999998884
No 264
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.61 E-value=0.047 Score=49.44 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=18.7
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|.|+|+.|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999883
No 265
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.60 E-value=0.45 Score=52.17 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=38.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|.+..++.+.+++..+. -...+-++|+.|+||||+|+.+..
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999999998754 245677899999999999998866
No 266
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.58 E-value=0.085 Score=59.97 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=40.0
Q ss_pred CCCccccchhHHHHHHHHHhcC----CCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG----PTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+.+.+|.++.++.|+++|... .....++.++|++|+||||+|+.+..
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999988631 22456899999999999999999998
No 267
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.57 E-value=0.29 Score=49.66 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=48.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCC-CCCHHHHHH-HHHHhcCCCCC-CcCCCCC------CHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPY-HYDADQILD-IVTVILLPFSM-LSKIKDK------DYE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~-~~~~~~l~~-il~~l~~~~~~-~~~~~~~------~~~ 252 (519)
-..++|+|..|+|||||.+.+.+.... +..+...+.. .-+..++.. .+..-...... --...+. -..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 457899999999999999999884221 3334444443 234444444 44322111000 0000001 111
Q ss_pred HHHHHHHHHh--cCCcEEEEecccc
Q 038733 253 MKKIILGEYL--MTKRYLIVLDDVW 275 (519)
Q Consensus 253 ~l~~~l~~~L--~~kr~LlVLDDv~ 275 (519)
...-.+.+++ ++|.+|+++||+-
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccch
Confidence 2223344444 5899999999974
No 268
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.56 E-value=0.37 Score=46.49 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=56.6
Q ss_pred HHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCC----------
Q 038733 172 LDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFS---------- 241 (519)
Q Consensus 172 ~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~---------- 241 (519)
-++|..+=..-+++.|.|.+|+||||||.++... ..+. =..++|++..++ ..++.+-+.+++....
T Consensus 15 D~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~~-g~~~~y~~~e~~--~~~~~~~~~~~g~~~~~~~~~g~l~i 90 (234)
T PRK06067 15 DRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALKQ-GKKVYVITTENT--SKSYLKQMESVKIDISDFFLWGYLRI 90 (234)
T ss_pred HHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHhC-CCEEEEEEcCCC--HHHHHHHHHHCCCChhHHHhCCCceE
Confidence 3344344345779999999999999999987442 1222 246778887654 3444442222321100
Q ss_pred --C-Cc--CCCCCCHHHHHHHHHHHhcC-CcEEEEeccc
Q 038733 242 --M-LS--KIKDKDYEMKKIILGEYLMT-KRYLIVLDDV 274 (519)
Q Consensus 242 --~-~~--~~~~~~~~~l~~~l~~~L~~-kr~LlVLDDv 274 (519)
. +. .....+.+.+...+.+.+.. +.-++|+|.+
T Consensus 91 ~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~ 129 (234)
T PRK06067 91 FPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSL 129 (234)
T ss_pred EeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecH
Confidence 0 00 01123446677777777754 4557889976
No 269
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.52 E-value=0.43 Score=52.88 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999997653 245678999999999999988766
No 270
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.51 E-value=0.32 Score=43.14 Aligned_cols=24 Identities=8% Similarity=0.010 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999884
No 271
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.51 E-value=0.45 Score=50.07 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=20.8
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|.++|..|+||||++..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999998877765
No 272
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.50 E-value=0.068 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=20.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAY 203 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~ 203 (519)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 273
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.50 E-value=0.45 Score=52.36 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999987653 2456678999999999999988773
No 274
>PRK14530 adenylate kinase; Provisional
Probab=93.49 E-value=0.06 Score=51.30 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+.|.|+|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999977
No 275
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.49 E-value=0.13 Score=47.69 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=20.3
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 276
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.47 E-value=0.13 Score=51.30 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=30.1
Q ss_pred ccccchhHHHHHHHHHh---cC--------C--CcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 160 NMVGLDDRMEELLDLLI---EG--------P--TQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~---~~--------~--~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.++|.++.+++|.++.. .. . ....-+.++|.+|+||||+|+.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 47887777777655422 11 0 0122577899999999999977665
No 277
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.46 E-value=0.48 Score=49.31 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=46.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCcc--CCCcEEEEEEcCCCCCHH--HHHH-HHHHhcCCCCCCcCCCCCCHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVK--HYFDYLAWIPSPYHYDAD--QILD-IVTVILLPFSMLSKIKDKDYEMKK 255 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~--~~F~~~~wv~vs~~~~~~--~l~~-il~~l~~~~~~~~~~~~~~~~~l~ 255 (519)
...+|.++|..|+||||.+..+....... .+=..+..++.. .+... +-++ ..+.++.+.. ...+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-----~~~~~~~l~ 246 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-----AIESFKDLK 246 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-----eeCcHHHHH
Confidence 35799999999999999887776632211 111234444443 33332 2244 5555544221 222445555
Q ss_pred HHHHHHhcCCcEEEEeccc
Q 038733 256 IILGEYLMTKRYLIVLDDV 274 (519)
Q Consensus 256 ~~l~~~L~~kr~LlVLDDv 274 (519)
..+.+. .+.-++++|..
T Consensus 247 ~~L~~~--~~~DlVLIDTa 263 (388)
T PRK12723 247 EEITQS--KDFDLVLVDTI 263 (388)
T ss_pred HHHHHh--CCCCEEEEcCC
Confidence 555443 33457777765
No 278
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.45 E-value=0.14 Score=45.27 Aligned_cols=70 Identities=9% Similarity=0.033 Sum_probs=41.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIKDKDYEMKKIILGE 260 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 260 (519)
.+=|-|.|-+|+|||||+..+..- .. .-|+++|+-.....+.. .=+... -...|.+.+.+.|-.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~--~~-----~~~i~isd~vkEn~l~~gyDE~y~--------c~i~DEdkv~D~Le~ 71 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK--TG-----LEYIEISDLVKENNLYEGYDEEYK--------CHILDEDKVLDELEP 71 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH--hC-----CceEehhhHHhhhcchhccccccc--------CccccHHHHHHHHHH
Confidence 445789999999999999999862 21 13667665332222222 111111 133567777777777
Q ss_pred HhcCCc
Q 038733 261 YLMTKR 266 (519)
Q Consensus 261 ~L~~kr 266 (519)
.+.+..
T Consensus 72 ~m~~Gg 77 (176)
T KOG3347|consen 72 LMIEGG 77 (176)
T ss_pred HHhcCC
Confidence 665533
No 279
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.44 E-value=0.25 Score=48.61 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=48.1
Q ss_pred ceEEEeeCCCCCCHHHHH-HHHHhccCccCCCcEE-EEEEcCCCCC-HHHHHH-HHHHhcCCCC-CCcCCCCCCH-H---
Q 038733 182 LSVVAIPDSIGLDKTIFT-AEAYNSSYVKHYFDYL-AWIPSPYHYD-ADQILD-IVTVILLPFS-MLSKIKDKDY-E--- 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA-~~v~~~~~v~~~F~~~-~wv~vs~~~~-~~~l~~-il~~l~~~~~-~~~~~~~~~~-~--- 252 (519)
-.-++|.|..|+|||+|| +.+.+. . +-+.. +++-+++... ..++.. +.+.-..... .--...+... .
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 457899999999999995 667663 2 23444 6677776543 344444 4432111000 0000001111 1
Q ss_pred --HHHHHHHHHh--cCCcEEEEecccc
Q 038733 253 --MKKIILGEYL--MTKRYLIVLDDVW 275 (519)
Q Consensus 253 --~l~~~l~~~L--~~kr~LlVLDDv~ 275 (519)
...-.+.+++ +++.+|+++||+-
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 1123333433 5799999999984
No 280
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.43 E-value=0.07 Score=51.76 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
....|.++||+|.||||..|.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 46678889999999999999998853
No 281
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.42 E-value=0.22 Score=47.63 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=39.4
Q ss_pred CCCCccccchhHHHHHHHHHhc--CCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC
Q 038733 156 SKNRNMVGLDDRMEELLDLLIE--GPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF 212 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F 212 (519)
.+-..++|.+..++.+++--.. ......=+-.||..|.||++|++++.+ .+....
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~g 113 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEG 113 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcC
Confidence 4445789999888888764432 122244567899999999999999999 454443
No 282
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.42 E-value=0.29 Score=51.41 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-..++|.|..|+|||||++.+...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC
Confidence 458999999999999999999874
No 283
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.063 Score=49.64 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=20.0
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.|.|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999984
No 284
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.36 E-value=0.13 Score=49.95 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 167 RMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...++++.+.....+..+|+|.|.+|+||+||.-.+..
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 45667777766555688999999999999999987766
No 285
>PF14516 AAA_35: AAA-like domain
Probab=93.36 E-value=0.76 Score=46.94 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=71.8
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCC-----CCCHHHHH
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPY-----HYDADQIL 230 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~-----~~~~~~l~ 230 (519)
.+.+-.|+|...-+++.+.|... -..+.|.|+..+|||||...+.+..+-. .+. .+++.... ..+..+.+
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHH
Confidence 34455678887777788777653 3488999999999999999988743332 343 34665543 13566666
Q ss_pred H-HHHHhcCCCCCCcCC------CCCCHHHHHHHHHHHh---cCCcEEEEecccccC
Q 038733 231 D-IVTVILLPFSMLSKI------KDKDYEMKKIILGEYL---MTKRYLIVLDDVWST 277 (519)
Q Consensus 231 ~-il~~l~~~~~~~~~~------~~~~~~~l~~~l~~~L---~~kr~LlVLDDv~~~ 277 (519)
+ +...+...-...... ...........+.+.+ .+++.+|++|+|...
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 6 666655433221111 0112234444455443 258999999999753
No 286
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.35 E-value=0.43 Score=46.18 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=36.0
Q ss_pred HHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 172 LDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 172 ~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
-++|..+=..-+++.|.|.+|+|||+||..+... .. ..-..++|++... +..++.+
T Consensus 11 D~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~-~~-~~ge~~lyvs~ee--~~~~i~~ 66 (237)
T TIGR03877 11 DEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGIYVALEE--HPVQVRR 66 (237)
T ss_pred HHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHH-HH-HcCCcEEEEEeeC--CHHHHHH
Confidence 3444444345789999999999999999765432 12 2235677887654 4445555
No 287
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.34 E-value=8.6 Score=44.02 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=20.1
Q ss_pred cceEEEeeCCCCCCHHHHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAY 203 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~ 203 (519)
+.+++.|.|+.+.||||+.+.+.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHH
Confidence 36788999999999999998874
No 288
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.32 E-value=0.08 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.2
Q ss_pred EEEeeCCCCCCHHHHHHHHHhcc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
-|+++|.+|+|||||+..+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 289
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.32 E-value=0.077 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.5
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+++++|+++|..|+|||||.+.+.+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999998873
No 290
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.31 E-value=0.17 Score=43.64 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=35.3
Q ss_pred CccccchhHHHHHHHHHhc-----CCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIE-----GPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-----~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|-.-..+.+++.+.. .+...-|++..|..|+|||.+++.|.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4678877666666666643 2456889999999999999988777664
No 291
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.12 Score=52.23 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=43.4
Q ss_pred CCCCCCccccchhHHHHHHHHHhcC---C--------CcceEEEeeCCCCCCHHHHHHHHHhccCccCCC
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEG---P--------TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF 212 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~---~--------~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F 212 (519)
|.....++-|-++.+++|.+.+.-. + ...+=|-.+|++|.|||-||++|.| +....|
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF 213 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF 213 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE
Confidence 4445567778999999998877532 1 2466778899999999999999999 555554
No 292
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.26 E-value=0.15 Score=50.29 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHH
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQIL 230 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~ 230 (519)
-.+|+..+.....+..+|+|.|.+|+||+||.-.+-....-+.+==.++=|.-|.+++--.|+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 356667676666678899999999999999997776632222222234445556666544443
No 293
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=93.24 E-value=0.29 Score=51.55 Aligned_cols=39 Identities=8% Similarity=-0.118 Sum_probs=27.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCC
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHY 224 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~ 224 (519)
-..++|+|..|+|||||++.+..... -+..+...+++..
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGerg 195 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERG 195 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccc
Confidence 45889999999999999999987422 2344445555443
No 294
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.22 E-value=0.13 Score=55.31 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=48.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccC-CCcEEE-EEEcCCCCCHHHHHHHHHHhcC-----CCCCCcCCCCCCHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKH-YFDYLA-WIPSPYHYDADQILDIVTVILL-----PFSMLSKIKDKDYEMK 254 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~-~F~~~~-wv~vs~~~~~~~l~~il~~l~~-----~~~~~~~~~~~~~~~l 254 (519)
-.-..|+|.+|+|||||++.|.+. +.. +=++.+ .+-|.+... ++..+-+.+.. ....+.. .-.....+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~--i~~n~~~~~~ivvLIgERpe--EVtdm~rsVkgeVVasT~D~p~~-~~~~~a~~ 490 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANA--ITTNNPECHLMVVLVDERPE--EVTDMQRSVKGEVIASTFDRPPS-DHTTVAEL 490 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHH--HhhcCCCeEEEEEEEeCchh--hHHHHHHhccceEEEECCCCCHH-HHHHHHHH
Confidence 456789999999999999999983 322 223433 334444332 22113333311 1110000 00112233
Q ss_pred HHHHHHHh--cCCcEEEEecccc
Q 038733 255 KIILGEYL--MTKRYLIVLDDVW 275 (519)
Q Consensus 255 ~~~l~~~L--~~kr~LlVLDDv~ 275 (519)
...+.+++ .++.+||++|++-
T Consensus 491 ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 491 AIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHcCCCEEEEEeCch
Confidence 34455555 6799999999984
No 295
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.22 E-value=0.24 Score=54.85 Aligned_cols=76 Identities=9% Similarity=0.067 Sum_probs=50.2
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccC-CCcEEEEEEcCCCCCHHHHHH-HH
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKH-YFDYLAWIPSPYHYDADQILD-IV 233 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~-~F~~~~wv~vs~~~~~~~l~~-il 233 (519)
..-++++|.++.++.+...+.... -+-++|+.|+||||+|+.+.+ .+.. .|...+++.-+. .+...+++ ++
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~~-~~~~~~~~~v~ 87 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNPE-DPNMPRIVEVP 87 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCCC-CCchHHHHHHH
Confidence 344678999988888887776542 445899999999999999998 4433 333334333332 23445566 66
Q ss_pred HHhcC
Q 038733 234 TVILL 238 (519)
Q Consensus 234 ~~l~~ 238 (519)
.+++.
T Consensus 88 ~~~g~ 92 (608)
T TIGR00764 88 AGEGR 92 (608)
T ss_pred Hhhch
Confidence 66654
No 296
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.21 E-value=0.076 Score=48.77 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|.|+|+.|.||||+++.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999999883
No 297
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.20 E-value=0.067 Score=48.54 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=18.5
Q ss_pred EEEeeCCCCCCHHHHHHHHH
Q 038733 184 VVAIPDSIGLDKTIFTAEAY 203 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~ 203 (519)
.|+|.|-+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 298
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.20 E-value=0.27 Score=51.94 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=49.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCC----CCcCCCCC---CHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFS----MLSKIKDK---DYE 252 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~----~~~~~~~~---~~~ 252 (519)
.-..++|.|..|+|||||++.+....... ..+++..--+.-...++.+ +...-..... .+.+.... -..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999998743221 1333333223333444444 4332111000 00000000 012
Q ss_pred HHHHHHHHHh--cCCcEEEEeccccc
Q 038733 253 MKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 253 ~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.....+.+++ +++++|+++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 2233445555 57999999999843
No 299
>PRK06761 hypothetical protein; Provisional
Probab=93.13 E-value=0.17 Score=50.26 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=21.3
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++|.|.|++|+||||+++.+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999984
No 300
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.13 E-value=0.13 Score=47.29 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=22.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
-.++.|.|+.|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578899999999999999999954
No 301
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.12 E-value=0.4 Score=48.59 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=22.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+++++|++|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888774
No 302
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.12 E-value=0.068 Score=47.83 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=19.6
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
||.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998873
No 303
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.12 E-value=0.21 Score=52.73 Aligned_cols=94 Identities=11% Similarity=0.172 Sum_probs=55.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC-HHHHHH-HHHHhcCCCC-CCcCCCCC------CHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD-ADQILD-IVTVILLPFS-MLSKIKDK------DYE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~-il~~l~~~~~-~~~~~~~~------~~~ 252 (519)
-.-++|.|..|+|||+|+..+..... +.+-+.++++-+++..+ ..++.+ +...-..... .--...+. ...
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 45789999999999999988876522 23347888888876553 334444 4432111100 00000111 112
Q ss_pred HHHHHHHHHhc---CCcEEEEeccccc
Q 038733 253 MKKIILGEYLM---TKRYLIVLDDVWS 276 (519)
Q Consensus 253 ~l~~~l~~~L~---~kr~LlVLDDv~~ 276 (519)
...-.+.++++ ++++|+++||+-.
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHH
Confidence 23345666664 5899999999854
No 304
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.11 E-value=0.089 Score=49.50 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999883
No 305
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.09 E-value=0.07 Score=48.14 Aligned_cols=35 Identities=11% Similarity=0.008 Sum_probs=24.9
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEE
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIP 219 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~ 219 (519)
|++|+|+.|+|||||+..+....+ ...+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~-~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK-ARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEec
Confidence 589999999999999999988422 12354444433
No 306
>PRK13946 shikimate kinase; Provisional
Probab=93.07 E-value=0.08 Score=49.16 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+.|.++|+.|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999998
No 307
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.05 E-value=0.068 Score=46.67 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|+|||||.+.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 358999999999999999999873
No 308
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.05 E-value=0.079 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
--+++|+|+.|+|||||.+.|..
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999976
No 309
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.04 E-value=0.075 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+|.|-|.+|+||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6899999999999999999984
No 310
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.03 E-value=0.27 Score=51.79 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=55.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccC--CCc---------EEEEEEcCCCCCHHHHHH-HHHHhc-CCCC----CCc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKH--YFD---------YLAWIPSPYHYDADQILD-IVTVIL-LPFS----MLS 244 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~--~F~---------~~~wv~vs~~~~~~~l~~-il~~l~-~~~~----~~~ 244 (519)
-.-++|.|-.|+|||||+..+.+...... ..| .++++-+++.....+.+. .+..-+ .... .+.
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 45789999999999999999887544210 022 567788887755555444 444433 1110 000
Q ss_pred CCC---CCCHHHHHHHHHHHhc---CCcEEEEeccccc
Q 038733 245 KIK---DKDYEMKKIILGEYLM---TKRYLIVLDDVWS 276 (519)
Q Consensus 245 ~~~---~~~~~~l~~~l~~~L~---~kr~LlVLDDv~~ 276 (519)
+-. -.-.......+.++++ ++++|+++||+-.
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 000 0011222334666665 5999999999843
No 311
>PRK13695 putative NTPase; Provisional
Probab=92.98 E-value=0.099 Score=47.96 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=24.4
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-|+|+|.+|+|||||++.+++.... ..|....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4789999999999999999874222 234444454
No 312
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.97 E-value=0.085 Score=48.66 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.++.|+|..|.|||||++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999983
No 313
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.97 E-value=0.16 Score=51.66 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 169 EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..|.+.+........+|+|.|.+|+|||||+..+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 455555544344678999999999999999998766
No 314
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.96 E-value=0.62 Score=51.64 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=38.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..++.|..++..+. -..-+-++|..|+||||+|+.+.+.
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHH
Confidence 3578999999999999988653 2346778999999999999999874
No 315
>PRK04182 cytidylate kinase; Provisional
Probab=92.95 E-value=0.087 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=20.4
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999883
No 316
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.93 E-value=0.36 Score=51.26 Aligned_cols=95 Identities=16% Similarity=0.129 Sum_probs=53.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCc--EEEEEEcCCCCC-HHHHHH-HHHHhcCCCC----CCcCCCC---CC
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFD--YLAWIPSPYHYD-ADQILD-IVTVILLPFS----MLSKIKD---KD 250 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~--~~~wv~vs~~~~-~~~l~~-il~~l~~~~~----~~~~~~~---~~ 250 (519)
-.-++|.|-.|+|||||+..+.+.......+. .++++-+++..+ +.++.. +...-..... .+.+... .-
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 45789999999999999999988644322221 566777766433 344555 4432111100 0000000 01
Q ss_pred HHHHHHHHHHHhc---CCcEEEEeccccc
Q 038733 251 YEMKKIILGEYLM---TKRYLIVLDDVWS 276 (519)
Q Consensus 251 ~~~l~~~l~~~L~---~kr~LlVLDDv~~ 276 (519)
.......+.++++ ++++||++||+..
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 1222344666665 6899999999853
No 317
>PRK14974 cell division protein FtsY; Provisional
Probab=92.92 E-value=0.53 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=20.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|.++|+.|+||||++..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999997776665
No 318
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.92 E-value=0.34 Score=51.01 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=49.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCC-CCHHHHHH-HHHHhcCCCC----CCcCCCC---CCHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYH-YDADQILD-IVTVILLPFS----MLSKIKD---KDYE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~-~~~~~l~~-il~~l~~~~~----~~~~~~~---~~~~ 252 (519)
-..++|+|..|+|||||++.+.+.. +.+..+++.+++. ..+.+++. ....-..... .+.+... .-..
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 5688999999999999999998732 2345566655543 33334444 3321000000 0000000 0111
Q ss_pred HHHHHHHHHh--cCCcEEEEeccccc
Q 038733 253 MKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 253 ~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.....+.+++ +++++||++||+..
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 1223345555 57999999999843
No 319
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.92 E-value=0.14 Score=48.18 Aligned_cols=35 Identities=14% Similarity=-0.111 Sum_probs=27.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIP 219 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~ 219 (519)
-.|++|+|+.|+|||||.+.+..-+.. =...+|+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEEC
Confidence 459999999999999999999874333 34567775
No 320
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.90 E-value=0.14 Score=48.30 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEE
Q 038733 163 GLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIP 219 (519)
Q Consensus 163 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~ 219 (519)
.+..+-...++.|.. ..++.+.|++|.|||.||-+..-+.-....|+..+++.
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 455566667777773 56999999999999999988776544457888887774
No 321
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.90 E-value=0.15 Score=50.08 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=36.9
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
+.-+++.|.|.+|+|||+++.+... +.......++||+... +..++.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e--~~~~l~~ 68 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEE--SPEELLE 68 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecC--CHHHHHH
Confidence 4578999999999999999977666 3555588899998765 3445555
No 322
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.88 E-value=0.091 Score=47.35 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999987766
No 323
>PRK13948 shikimate kinase; Provisional
Probab=92.88 E-value=0.096 Score=48.58 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.8
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+.|.++|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357888999999999999999988
No 324
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.88 E-value=0.14 Score=51.71 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=29.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQIL 230 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~ 230 (519)
.+++.+.|.|||||||+|.+..- ........+.-|+.....+..+++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhh
Confidence 57899999999999999987544 222333335555554444444433
No 325
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.88 E-value=0.16 Score=46.05 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 166 DRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
+.+++|.++|.. +++.++|..|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456777777753 588999999999999999999853
No 326
>PRK09087 hypothetical protein; Validated
Probab=92.87 E-value=0.091 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+.+.|+|..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999874
No 327
>PRK14527 adenylate kinase; Provisional
Probab=92.85 E-value=0.097 Score=48.85 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=22.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+|.|+|++|+||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998863
No 328
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.84 E-value=0.38 Score=50.66 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=51.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC-HHHHHH-HHHHhcCCCC-CCcCCCCCCH------
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD-ADQILD-IVTVILLPFS-MLSKIKDKDY------ 251 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~-il~~l~~~~~-~~~~~~~~~~------ 251 (519)
.-..++|.|..|+|||||.+.+++... -+.++.+-+++..+ ..++.. .+..-..... .--...+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 356899999999999999999998432 25677777776543 233333 2221110000 0000011111
Q ss_pred HHHHHHHHHHh--cCCcEEEEeccccc
Q 038733 252 EMKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 252 ~~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
......+.+++ ++|++|+++||+-.
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11123344444 58999999999843
No 329
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.83 E-value=0.14 Score=51.54 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 169 EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+++-+........+|+|+|.+|+|||||+..+...
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444433446889999999999999999887763
No 330
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.82 E-value=0.79 Score=49.67 Aligned_cols=46 Identities=13% Similarity=-0.018 Sum_probs=37.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|-+..++.+...+..+. -...+-++|+.|+||||+|+.+.+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999987654 345678999999999999997766
No 331
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.82 E-value=0.28 Score=50.06 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=47.7
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
..++|.++.+..+...+..+. -+-+.|.+|+|||+||+.+.. .... ...++.........++..
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHhcC
Confidence 348998888888877776543 577899999999999999988 3332 235666677777777766
No 332
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.81 E-value=0.22 Score=47.52 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=28.5
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCC
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYH 223 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~ 223 (519)
.-++|.|..|+|||+|++.+.++.. -+..+++.+++.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer 52 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGER 52 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESEC
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeecccc
Confidence 5788999999999999999988532 234477777654
No 333
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=92.78 E-value=0.57 Score=49.43 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=49.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCC-CCCHHHHHH-HHHHhcCCCC-CCcCCCCCC------HH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPY-HYDADQILD-IVTVILLPFS-MLSKIKDKD------YE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~-~~~~~~l~~-il~~l~~~~~-~~~~~~~~~------~~ 252 (519)
-..++|.|..|+|||||.+.+.+.. . -+..+.+.+.. ..+..++.. .......... .-....... ..
T Consensus 145 Gq~~~I~G~sG~GKStLl~~I~~~~--~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~ 220 (422)
T TIGR02546 145 GQRIGIFAGAGVGKSTLLGMIARGA--S--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAA 220 (422)
T ss_pred CCEEEEECCCCCChHHHHHHHhCCC--C--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHH
Confidence 4578999999999999999999832 2 23344444443 334444443 3332111110 000001111 11
Q ss_pred HHHHHHHHHh--cCCcEEEEeccccc
Q 038733 253 MKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 253 ~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.....+.+++ ++++.|+++||+..
T Consensus 221 ~~a~~~AE~f~~~g~~Vl~~~Dsltr 246 (422)
T TIGR02546 221 YTATAIAEYFRDQGKRVLLMMDSLTR 246 (422)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCchH
Confidence 2233445555 46899999999853
No 334
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.77 E-value=0.51 Score=49.93 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=22.1
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-..++|+|..|+|||||++.+.+.
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~ 181 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARN 181 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999998874
No 335
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.75 E-value=0.51 Score=50.23 Aligned_cols=100 Identities=22% Similarity=0.161 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCC
Q 038733 169 EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKD 248 (519)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~ 248 (519)
..+-+.|..+=..-.++.|.|.+|+|||||+..+..... ..=..++|++... +..++..-++.++.......-...
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ee--s~~qi~~ra~rlg~~~~~l~~~~e 142 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEE--SASQIKLRAERLGLPSDNLYLLAE 142 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccc--cHHHHHHHHHHcCCChhcEEEeCC
Confidence 344444544433466999999999999999988876422 2223567776543 333443334444432110000112
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEecccc
Q 038733 249 KDYEMKKIILGEYLMTKRYLIVLDDVW 275 (519)
Q Consensus 249 ~~~~~l~~~l~~~L~~kr~LlVLDDv~ 275 (519)
.+.+.+...+.+ .+.-++|+|.+.
T Consensus 143 ~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 143 TNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred CCHHHHHHHHHh---hCCCEEEEechh
Confidence 344444444432 355589999874
No 336
>PLN02348 phosphoribulokinase
Probab=92.73 E-value=0.15 Score=52.62 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=23.3
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...-+|+|.|.+|+||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999883
No 337
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.72 E-value=0.097 Score=49.62 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 468899999999999999998863
No 338
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.69 E-value=0.16 Score=48.29 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999983
No 339
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.68 E-value=0.068 Score=47.06 Aligned_cols=44 Identities=23% Similarity=0.170 Sum_probs=32.2
Q ss_pred ccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 162 VGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 162 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
||.-..++++.+.+..-......|-|.|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56667777777777653233556789999999999999999985
No 340
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.68 E-value=0.52 Score=49.47 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=22.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-..++|+|..|+|||||++.+.+.
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~ 160 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARN 160 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999988873
No 341
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.68 E-value=0.34 Score=51.01 Aligned_cols=91 Identities=11% Similarity=0.038 Sum_probs=49.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCC-CCCHHHHHH-HHHHhcCCCC-CCcCCCCC------CHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPY-HYDADQILD-IVTVILLPFS-MLSKIKDK------DYE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~-~~~~~~l~~-il~~l~~~~~-~~~~~~~~------~~~ 252 (519)
-..++|.|..|+|||||++.+....+. ....+. .+++ .....+++. .+..-+.... .-....+. ...
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC---CeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 458899999999999999999884322 112232 3333 355556655 5544221110 00000111 112
Q ss_pred HHHHHHHHHh--cCCcEEEEeccccc
Q 038733 253 MKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 253 ~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.....+.+++ +++..||++||+-.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHH
Confidence 2223344444 47999999999854
No 342
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=92.68 E-value=0.39 Score=50.76 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=48.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCC-CHHHHHH-HHHHhcCCCCC--CcCCCCCC-----HH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHY-DADQILD-IVTVILLPFSM--LSKIKDKD-----YE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~-~~~~l~~-il~~l~~~~~~--~~~~~~~~-----~~ 252 (519)
-..++|+|..|+|||||++.+.+.. . .+..+...+.... +..++.. +...-...... ....+... ..
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~---~-~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT---E-ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---C-CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4579999999999999999998732 1 2344444444332 3344444 43321111000 00000111 11
Q ss_pred HHHHHHHHHh--cCCcEEEEeccccc
Q 038733 253 MKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 253 ~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.....+.+++ +++++||++||+-.
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhH
Confidence 2223345555 57999999999843
No 343
>PRK05922 type III secretion system ATPase; Validated
Probab=92.67 E-value=0.45 Score=50.06 Aligned_cols=91 Identities=9% Similarity=0.057 Sum_probs=48.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCC-CCHHHHHH-HHHHhcCCCCC-CcCCCCC------CHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYH-YDADQILD-IVTVILLPFSM-LSKIKDK------DYE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~-~~~~~l~~-il~~l~~~~~~-~~~~~~~------~~~ 252 (519)
-..++|+|..|+|||||.+.+.+... -+..+.+.++.. -...+.+. ........... --...+. -..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 45689999999999999999987421 233344333332 22334444 33322211100 0000000 111
Q ss_pred HHHHHHHHHh--cCCcEEEEeccccc
Q 038733 253 MKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 253 ~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
...-.+.+++ +++++|+++||+-.
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 2233345555 57999999999843
No 344
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.67 E-value=0.37 Score=50.14 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=56.3
Q ss_pred CCCCccccchhHHH-HHHHHHhc-CCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-H
Q 038733 156 SKNRNMVGLDDRME-ELLDLLIE-GPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-I 232 (519)
Q Consensus 156 ~~~~~~vGr~~~~~-~l~~~L~~-~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-i 232 (519)
..+.-++|-..... .+...+.+ .......+-|+|..|.|||.|++++.| ....+......++++ ...... +
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~ 158 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDF 158 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHH
Confidence 34445666444333 23333333 223477999999999999999999999 555555533333332 233333 4
Q ss_pred HHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEeccccc
Q 038733 233 VTVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~ 276 (519)
+..+.. .-....++.. .-=++++||++-
T Consensus 159 v~a~~~--------------~~~~~Fk~~y--~~dlllIDDiq~ 186 (408)
T COG0593 159 VKALRD--------------NEMEKFKEKY--SLDLLLIDDIQF 186 (408)
T ss_pred HHHHHh--------------hhHHHHHHhh--ccCeeeechHhH
Confidence 444332 1233445554 333778899875
No 345
>PRK15453 phosphoribulokinase; Provisional
Probab=92.66 E-value=0.57 Score=46.37 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.7
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999998876
No 346
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.65 E-value=0.15 Score=49.81 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=51.8
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCC-----CCCHHH-HHHHHHHhcCCCCC-CcCCCCCCH-H
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPY-----HYDADQ-ILDIVTVILLPFSM-LSKIKDKDY-E 252 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~-----~~~~~~-l~~il~~l~~~~~~-~~~~~~~~~-~ 252 (519)
.-.++++||..|+|||||++.+..- ..-... .++..-.+ .....+ +.+++..++..... .......+- +
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L--~~pt~G-~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL--EEPTSG-EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC--cCCCCc-eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3569999999999999999999982 222232 33332111 111222 33366665542210 001112222 2
Q ss_pred HHHHHHHHHhcCCcEEEEecccccC
Q 038733 253 MKKIILGEYLMTKRYLIVLDDVWST 277 (519)
Q Consensus 253 ~l~~~l~~~L~~kr~LlVLDDv~~~ 277 (519)
.-.-.+.+.|.-+.-++|.|..-+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhh
Confidence 2234566777888889999986443
No 347
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.64 E-value=0.14 Score=47.75 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=22.3
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3678999999999999999999873
No 348
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.60 E-value=0.18 Score=55.28 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=36.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 157 KNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+..+.|.+..+.|.++-......-.+|.|+|+.|+||||+|+.+..
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred CCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHH
Confidence 445566677666666665555555566899999999999999999988
No 349
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.59 E-value=0.11 Score=49.04 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|+++|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998766
No 350
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.57 E-value=0.11 Score=47.25 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=19.9
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+|.|.|..|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999987
No 351
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.56 E-value=0.45 Score=50.14 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=22.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-..++|+|..|+|||||++.+.+.
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhcc
Confidence 3568999999999999999998873
No 352
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.54 E-value=0.08 Score=47.96 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=17.5
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999983
No 353
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.53 E-value=0.14 Score=52.42 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=38.9
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 155 SSKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+-+.+||-++.+..|...+.+.. +.-+-|.|..|+||||+|+.+++-
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~--~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPK--IGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCC--CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3455679999998888887776643 555669999999999999999764
No 354
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.51 E-value=0.1 Score=49.71 Aligned_cols=24 Identities=21% Similarity=0.032 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 458999999999999999999883
No 355
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.51 E-value=0.18 Score=47.71 Aligned_cols=34 Identities=9% Similarity=-0.159 Sum_probs=26.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|..|.|||||++.+.... ......+|+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~ 59 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLF 59 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEE
Confidence 4689999999999999999999842 223445554
No 356
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.51 E-value=0.23 Score=54.98 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=55.1
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHH
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVT 234 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~ 234 (519)
..-+.++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+.. -..+|+..+|..-+. .+...+++ +..
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~-~~~~~~~~~v~~ 101 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPE-DPNNPKIRTVPA 101 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCC-cchHHHHHHHHH
Confidence 34457899988888888877654 368889999999999999998741 223457778876643 35566666 666
Q ss_pred HhcC
Q 038733 235 VILL 238 (519)
Q Consensus 235 ~l~~ 238 (519)
+++.
T Consensus 102 ~~G~ 105 (637)
T PRK13765 102 GKGK 105 (637)
T ss_pred hcCH
Confidence 5554
No 357
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.47 E-value=0.1 Score=49.33 Aligned_cols=24 Identities=17% Similarity=-0.002 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999883
No 358
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.45 E-value=0.19 Score=51.34 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=35.4
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+||.+..+..++-.+.+.. ..-+.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 468999999888866666533 44567999999999999999975
No 359
>PLN02796 D-glycerate 3-kinase
Probab=92.44 E-value=0.12 Score=52.56 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=22.6
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-+|+|.|..|+|||||++.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999999999883
No 360
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.44 E-value=0.11 Score=46.07 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
+-|-++|..|+|||||+|.+...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999998753
No 361
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.44 E-value=0.16 Score=55.24 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=36.5
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|.+..++.+...+.... ..-+-|+|..|+||||+|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999988775443 345578999999999999999863
No 362
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.42 E-value=0.1 Score=50.86 Aligned_cols=23 Identities=13% Similarity=0.029 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999999998
No 363
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.41 E-value=0.11 Score=47.65 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.0
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|.|.|..|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 678999999999999998874
No 364
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.40 E-value=0.13 Score=46.10 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.3
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 365
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.16 Score=56.69 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=65.6
Q ss_pred CCccccchhHHHHHHHHHhcC-------CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC---cEEEEEEcCCCCCHH
Q 038733 158 NRNMVGLDDRMEELLDLLIEG-------PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF---DYLAWIPSPYHYDAD 227 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F---~~~~wv~vs~~~~~~ 227 (519)
...++|-+..++.+.+.+... ...+.+.-.+|+.|||||.||+.+... -| +.-+-+ |+.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~------DMS 558 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRI------DMS 558 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceee------chH
Confidence 457899999999999988642 234678888999999999999988772 23 222333 444
Q ss_pred HHHH--HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcE-EEEecccccCC
Q 038733 228 QILD--IVTVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRY-LIVLDDVWSTD 278 (519)
Q Consensus 228 ~l~~--il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LlVLDDv~~~~ 278 (519)
+... -+..|-+. |+..-..+ + -..|.+.++.+.| +|.||.|....
T Consensus 559 Ey~EkHsVSrLIGa---PPGYVGye--e-GG~LTEaVRr~PySViLlDEIEKAH 606 (786)
T COG0542 559 EYMEKHSVSRLIGA---PPGYVGYE--E-GGQLTEAVRRKPYSVILLDEIEKAH 606 (786)
T ss_pred HHHHHHHHHHHhCC---CCCCceec--c-ccchhHhhhcCCCeEEEechhhhcC
Confidence 4444 33333332 12221111 1 3455666677777 78889997654
No 366
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=92.36 E-value=0.14 Score=45.93 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.6
Q ss_pred EEeeCCCCCCHHHHHHHHHhcc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~~ 206 (519)
|.++|.+|+|||||+..+.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999988753
No 367
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.35 E-value=0.18 Score=47.78 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=25.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|..|.|||||++.+..- . ......+++
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl--~-~~~~G~i~~ 61 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA--L-TPSRGQVRI 61 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCceEEE
Confidence 459999999999999999999873 2 233445554
No 368
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.34 E-value=0.19 Score=52.80 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=34.7
Q ss_pred CccccchhHHHHHHHHHhc-------C-----C--CcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 159 RNMVGLDDRMEELLDLLIE-------G-----P--TQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-------~-----~--~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..++|.+..++.+...+.. . + ....-+.++|++|+|||+||+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4589999998888655521 0 0 1235688999999999999999987
No 369
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.34 E-value=0.19 Score=47.92 Aligned_cols=34 Identities=12% Similarity=-0.116 Sum_probs=26.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|..|.|||||.+.+.... ......+++
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~ 59 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL---KPTSGRATV 59 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEE
Confidence 4689999999999999999999832 234455554
No 370
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.34 E-value=0.27 Score=45.74 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 371
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.31 E-value=0.33 Score=50.88 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=47.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCc-----CCCCCC------
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLS-----KIKDKD------ 250 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~-----~~~~~~------ 250 (519)
-..++|+|..|+|||||++.+.+... -+..+.+.++... .++..+.+.+........ ...+..
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~--~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERG--REVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecCh--HHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 45799999999999999999887322 1344445555432 233333332222110000 000111
Q ss_pred HHHHHHHHHHHh--cCCcEEEEeccccc
Q 038733 251 YEMKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 251 ~~~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.......+.+++ +++++|+++||+-.
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 112223344454 57999999999843
No 372
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.31 E-value=0.1 Score=44.11 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=19.5
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 373
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=92.31 E-value=0.11 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.6
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-|+|+|.+|+|||||++.+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998775
No 374
>PLN02200 adenylate kinase family protein
Probab=92.31 E-value=0.13 Score=49.83 Aligned_cols=24 Identities=8% Similarity=-0.031 Sum_probs=21.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998877
No 375
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.26 E-value=0.12 Score=47.23 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=19.9
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+.|.|+|+.|+||||+|+.+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999988
No 376
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.26 E-value=0.13 Score=46.56 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.6
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
++++|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999887
No 377
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.22 E-value=0.25 Score=50.88 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=40.3
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.....++|-+...+.+...+..+. -...+-|.|+.|+||||+|..+.+.
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHH
Confidence 345678999999999999997654 3456889999999999999988773
No 378
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.22 E-value=0.12 Score=48.15 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+...
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999883
No 379
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.21 E-value=0.12 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999873
No 380
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.18 E-value=1 Score=44.35 Aligned_cols=52 Identities=12% Similarity=-0.003 Sum_probs=34.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVI 236 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l 236 (519)
-.++.|.|.+|+||||++..+..... ..+=..++|++... +..++.. +...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 45888999999999999988766321 12123567877654 4566666 65544
No 381
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=92.17 E-value=0.13 Score=45.55 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|+++|..|+|||||.+.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998764
No 382
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.17 E-value=0.11 Score=54.30 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=22.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-++.|+|+|..|.|||||++.+.+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999987
No 383
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=92.12 E-value=0.11 Score=48.04 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+|+|+|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999877
No 384
>PRK08356 hypothetical protein; Provisional
Probab=92.12 E-value=0.14 Score=48.01 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=19.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAY 203 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~ 203 (519)
..+|.|+|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999993
No 385
>PRK06820 type III secretion system ATPase; Validated
Probab=92.12 E-value=0.71 Score=48.76 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=49.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCc-----CCCCCC------
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLS-----KIKDKD------ 250 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~-----~~~~~~------ 250 (519)
-..++|+|..|+|||||++.+.... +-+..+...++... .++..+++.......... ...+..
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~~----~~dv~V~~~iGerg--rEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~ 236 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCADS----AADVMVLALIGERG--REVREFLEQVLTPEARARTVVVVATSDRPALERLK 236 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhccC----CCCEEEEEEEccCh--HHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHH
Confidence 4588999999999999999988732 22344555555542 344333333322110000 001111
Q ss_pred HHHHHHHHHHHh--cCCcEEEEeccccc
Q 038733 251 YEMKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 251 ~~~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.......+.+++ +++++||++||+-.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 264 (440)
T PRK06820 237 GLSTATTIAEYFRDRGKKVLLMADSLTR 264 (440)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchhH
Confidence 111223345555 57999999999843
No 386
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.11 E-value=0.12 Score=41.48 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++.+.|.+|+||||++..+...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999888773
No 387
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.10 E-value=0.89 Score=48.50 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCC
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIK 247 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~ 247 (519)
+..+-.+|..+=..-.++.|.|.+|+|||||+..+... ....=..++|++.-. +..++..-+..++.......-..
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE--s~~qi~~ra~rlg~~~~~l~~~~ 155 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE--SLQQIKMRAIRLGLPEPNLYVLS 155 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC--CHHHHHHHHHHcCCChHHeEEcC
Confidence 34555555544344679999999999999999887653 211112466776543 33333222233332111000012
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEeccccc
Q 038733 248 DKDYEMKKIILGEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 248 ~~~~~~l~~~l~~~L~~kr~LlVLDDv~~ 276 (519)
..+.+.+...+.+ .+--++|+|.+..
T Consensus 156 e~~~~~I~~~i~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 156 ETNWEQICANIEE---ENPQACVIDSIQT 181 (454)
T ss_pred CCCHHHHHHHHHh---cCCcEEEEecchh
Confidence 2344444444432 2455799998743
No 388
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.10 E-value=0.15 Score=47.49 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 167 RMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+..+++.+.... -..+.|+|..|.|||||++.+..
T Consensus 13 ~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 13 LQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh
Confidence 344444444432 45899999999999999999887
No 389
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=92.09 E-value=0.15 Score=45.22 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.0
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|.|+|..|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998764
No 390
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.08 E-value=0.15 Score=45.31 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=18.9
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|.++|.+|+|||||.+.+.+.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999988775
No 391
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=92.08 E-value=0.14 Score=45.01 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=19.4
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 392
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.07 E-value=0.11 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=18.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+.|+|.|-||+||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4789999999999998877665
No 393
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=0.44 Score=45.85 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=41.6
Q ss_pred CCCCCCccccchhHHHHHHHHHhcC----C-------CcceEEEeeCCCCCCHHHHHHHHHhccCccCCC
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEG----P-------TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF 212 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~----~-------~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F 212 (519)
|.....++-|.+-.++++.+.+.-. + ...+=+..+|++|.|||-||+++.|+ ....|
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~--t~a~f 217 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH--TTAAF 217 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc--cchhe
Confidence 5556667888888888877765422 0 23566778999999999999999994 44444
No 394
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.06 E-value=0.12 Score=46.97 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|+|+|..|+|||||.+.+.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456999999999999999999874
No 395
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.03 E-value=0.19 Score=47.58 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=20.4
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+++|+|..|.|||||++.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999997
No 396
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.01 E-value=0.27 Score=46.92 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=25.1
Q ss_pred ccCccccccCCCCceeEEEEChhHHHHHHHHhcccC
Q 038733 390 RGFVDTRKRRAGGTINTCSVRGRCRPVLLTVAFKAE 425 (519)
Q Consensus 390 rsll~~~~~~~~g~~~~~~mHdlv~d~a~~~~~~e~ 425 (519)
--|+........|+=.+|-|.-++|.+.+++..++.
T Consensus 99 ~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~ 134 (255)
T COG3640 99 IDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRY 134 (255)
T ss_pred ccEEEeccccCCCCcccchHHHHHHHHHHHHhcccC
Confidence 344444444444555679999999999999887743
No 397
>PRK00698 tmk thymidylate kinase; Validated
Probab=92.01 E-value=0.14 Score=48.04 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 398
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.00 E-value=0.11 Score=51.53 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=19.7
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+|+|.|..|+|||||++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 399
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.00 E-value=0.14 Score=48.67 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=21.6
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|+|..|.|||||++.+..-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 89999999999999999999873
No 400
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.97 E-value=0.13 Score=49.08 Aligned_cols=23 Identities=22% Similarity=0.062 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||...+..
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999987
No 401
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.95 E-value=0.13 Score=49.66 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999983
No 402
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.92 E-value=0.23 Score=47.99 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999873
No 403
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.92 E-value=0.23 Score=46.59 Aligned_cols=34 Identities=12% Similarity=-0.103 Sum_probs=25.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|..|.|||||.+.+.... ......+++
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~ 60 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLL---NPEKGEILF 60 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC---CCCCeeEEE
Confidence 4699999999999999999998842 223345554
No 404
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.92 E-value=0.13 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++|+|+|.+|+|||||+..+...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998883
No 405
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.91 E-value=0.13 Score=47.83 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=19.2
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999883
No 406
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.91 E-value=0.13 Score=49.85 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999873
No 407
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=91.90 E-value=0.16 Score=44.36 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=20.5
Q ss_pred EEEeeCCCCCCHHHHHHHHHhcc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
-|+++|.+|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998864
No 408
>PRK01184 hypothetical protein; Provisional
Probab=91.89 E-value=0.13 Score=47.50 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=17.1
Q ss_pred eEEEeeCCCCCCHHHHHHH
Q 038733 183 SVVAIPDSIGLDKTIFTAE 201 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~ 201 (519)
.+|+|+|+.|+||||+|+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4899999999999999883
No 409
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=91.88 E-value=0.17 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.4
Q ss_pred EEeeCCCCCCHHHHHHHHHhcc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~~ 206 (519)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999987753
No 410
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.86 E-value=0.11 Score=50.63 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|.++|++|+||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999998873
No 411
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.86 E-value=0.22 Score=47.44 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999873
No 412
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.85 E-value=0.14 Score=48.90 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999983
No 413
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.85 E-value=0.14 Score=47.93 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999884
No 414
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.85 E-value=14 Score=38.74 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=33.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCC--CCHHHHHH-HHHHhcCC
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYH--YDADQILD-IVTVILLP 239 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~--~~~~~l~~-il~~l~~~ 239 (519)
...||-.||.-|.||||-+-.+.+. .+. ....+-+...+. +..-+-++ +.++++..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 3689999999999999988777663 333 222232222222 22333344 66766653
No 415
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.83 E-value=0.13 Score=49.65 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 416
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.81 E-value=0.14 Score=47.24 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999864
No 417
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.81 E-value=0.14 Score=48.91 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999883
No 418
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.80 E-value=0.14 Score=48.57 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.79 E-value=0.14 Score=47.37 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 459999999999999999999873
No 420
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=91.78 E-value=0.6 Score=49.36 Aligned_cols=94 Identities=11% Similarity=0.196 Sum_probs=53.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC-HHHHHH-HHHHhcCCCC-CCcCCCCCC------HH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD-ADQILD-IVTVILLPFS-MLSKIKDKD------YE 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~-il~~l~~~~~-~~~~~~~~~------~~ 252 (519)
-.-++|.|..|+|||||+..+...... .+=+.++++-+++... +.++.. +...-..... .--...+.. ..
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 457899999999999999987764211 1123677777766533 345555 5432111000 000001111 12
Q ss_pred HHHHHHHHHh---cCCcEEEEeccccc
Q 038733 253 MKKIILGEYL---MTKRYLIVLDDVWS 276 (519)
Q Consensus 253 ~l~~~l~~~L---~~kr~LlVLDDv~~ 276 (519)
...-.+.+++ +++++||++||+-.
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 2334566676 46899999999854
No 421
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.77 E-value=0.14 Score=49.07 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999987
No 422
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=91.75 E-value=0.18 Score=51.42 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=38.7
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|....+.++.+.+..-...-.-|-|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999999888764333456778999999999999999873
No 423
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.74 E-value=0.36 Score=48.79 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=42.8
Q ss_pred CCCCccccchhHHH---HHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC
Q 038733 156 SKNRNMVGLDDRME---ELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF 212 (519)
Q Consensus 156 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F 212 (519)
...+.+||..+..+ -|++++.+..-.-+.|-|+|++|.|||+||-.+...---.-.|
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 44567899766554 4678888776567899999999999999999999843333344
No 424
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=91.72 E-value=0.2 Score=46.38 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+.|.|+|+.|+|||||++.+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 468899999999999999999884
No 425
>PRK13768 GTPase; Provisional
Probab=91.72 E-value=0.15 Score=49.96 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..++.|.|.||+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 35789999999999998877765
No 426
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.68 E-value=0.23 Score=47.19 Aligned_cols=34 Identities=15% Similarity=-0.118 Sum_probs=26.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|..|.|||||.+.+..- .......+++
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 64 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL---LEPDAGFATV 64 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC---cCCCCceEEE
Confidence 458999999999999999999873 2233455555
No 427
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.68 E-value=0.15 Score=49.00 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=22.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999999999983
No 428
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=91.68 E-value=0.14 Score=48.67 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999873
No 429
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.67 E-value=0.13 Score=46.64 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|++|+|..|+|||||...+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 47999999999999999999877
No 430
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.65 E-value=0.15 Score=48.36 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999883
No 431
>PRK14532 adenylate kinase; Provisional
Probab=91.62 E-value=0.14 Score=47.42 Aligned_cols=20 Identities=5% Similarity=-0.074 Sum_probs=18.5
Q ss_pred EEeeCCCCCCHHHHHHHHHh
Q 038733 185 VAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~ 204 (519)
|.+.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 432
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.61 E-value=0.15 Score=48.08 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 459999999999999999999883
No 433
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=91.61 E-value=0.15 Score=45.47 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=19.2
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|.++|.+|+|||||++.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999875
No 434
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=91.59 E-value=0.48 Score=50.19 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-..++|.|..|+|||||.+.+.+.
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 435
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.58 E-value=0.27 Score=46.61 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999984
No 436
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.57 E-value=0.26 Score=47.43 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999983
No 437
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.57 E-value=0.2 Score=50.94 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc
Q 038733 169 EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220 (519)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v 220 (519)
+...+++..-+....-+.++|..|+|||+||.++.+. ....--.++++++
T Consensus 170 ~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~ 219 (329)
T PRK06835 170 EKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTA 219 (329)
T ss_pred HHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEH
Confidence 3344455432222367899999999999999999994 3222224556654
No 438
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.53 E-value=0.15 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999883
No 439
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.53 E-value=0.28 Score=44.88 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 440
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.52 E-value=0.46 Score=48.58 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=39.4
Q ss_pred CCCccccchhHHHH---HHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEE
Q 038733 157 KNRNMVGLDDRMEE---LLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLA 216 (519)
Q Consensus 157 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~ 216 (519)
....+||..+..+. +++++....-.-+.|-+.|++|.|||+||..+.. ......+++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~--eLG~~~PF~~ 82 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAK--ELGEDVPFVS 82 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHH--HCTTTS-EEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHH--HhCCCCCeeE
Confidence 35689997766554 5777776654567888999999999999999999 5555554433
No 441
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=91.52 E-value=0.29 Score=52.95 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=43.9
Q ss_pred CCCccccchhHHHHHHHHHhcC---CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEE
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG---PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIP 219 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~ 219 (519)
...++.--.+.++++..||... ....+++.+.|++|+||||.++.+.+. . .|+.+-|.+
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e--l--g~~v~Ew~n 78 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE--L--GFEVQEWIN 78 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH--h--CCeeEEecC
Confidence 3445555677889999999763 234679999999999999999999883 2 355666754
No 442
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=91.52 E-value=0.28 Score=45.30 Aligned_cols=24 Identities=8% Similarity=-0.093 Sum_probs=20.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|+|+|.+|+|||||...+.++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345599999999999999998874
No 443
>PTZ00494 tuzin-like protein; Provisional
Probab=91.51 E-value=8 Score=40.77 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=58.9
Q ss_pred CCCCCccccchhHHHHHHHHHhcC-CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-H
Q 038733 155 SSKNRNMVGLDDRMEELLDLLIEG-PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-I 232 (519)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-i 232 (519)
......+|.|+.+-.-+.+.|..- ....+++.+.|.-|.||++|.+.....+.+ ..++|.|... ++-++ |
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHHHH
Confidence 345667899999988888888764 457899999999999999999987775444 3466777654 34577 8
Q ss_pred HHHhcCCC
Q 038733 233 VTVILLPF 240 (519)
Q Consensus 233 l~~l~~~~ 240 (519)
++.++.+.
T Consensus 439 VKALgV~n 446 (664)
T PTZ00494 439 VRALGVSN 446 (664)
T ss_pred HHHhCCCC
Confidence 88888743
No 444
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=91.50 E-value=0.66 Score=46.93 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhcCC-CcceEEEeeCCCCCCHHHHHHHHHhccCcc--CCC---cEEEEEEcCCCCCHHHHHH-HHHHhc
Q 038733 165 DDRMEELLDLLIEGP-TQLSVVAIPDSIGLDKTIFTAEAYNSSYVK--HYF---DYLAWIPSPYHYDADQILD-IVTVIL 237 (519)
Q Consensus 165 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~--~~F---~~~~wv~vs~~~~~~~l~~-il~~l~ 237 (519)
+...+.|.+.|.+.+ ....+|+|.|.=|+||||+.+.+.+..+-. ..+ ..-.|-.-+.+--...++. |..++.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 455677888887653 578899999999999999999998843322 112 2233444433333445555 666665
Q ss_pred C
Q 038733 238 L 238 (519)
Q Consensus 238 ~ 238 (519)
.
T Consensus 82 ~ 82 (325)
T PF07693_consen 82 K 82 (325)
T ss_pred H
Confidence 4
No 445
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=91.49 E-value=0.16 Score=44.56 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.7
Q ss_pred EEeeCCCCCCHHHHHHHHHhcc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~~ 206 (519)
|.++|..|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 6789999999999999998763
No 446
>PLN02165 adenylate isopentenyltransferase
Probab=91.49 E-value=0.15 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+|+|+|+.|+||||||..+...
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 559999999999999999998874
No 447
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=91.47 E-value=0.64 Score=49.44 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=48.7
Q ss_pred ceEEEeeCCCCCCHHHHH-HHHHhccCccCCCcEE-EEEEcCCCCC-HHHHHH-HHHHhcCCCC-CCcCCCCC-CHH---
Q 038733 182 LSVVAIPDSIGLDKTIFT-AEAYNSSYVKHYFDYL-AWIPSPYHYD-ADQILD-IVTVILLPFS-MLSKIKDK-DYE--- 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA-~~v~~~~~v~~~F~~~-~wv~vs~~~~-~~~l~~-il~~l~~~~~-~~~~~~~~-~~~--- 252 (519)
-.-++|.|-.|+|||||| ..+.|. . .-+.. +++-+++..+ +.++.. +...-..... .--...+. ...
T Consensus 141 GQR~~I~g~~g~GKt~Lal~~I~~q--~--~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 141 GQRELIIGDRQTGKTAVATDTILNQ--K--GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHhc--c--cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 457899999999999995 566663 1 23444 7888876543 344444 3332111000 00000000 001
Q ss_pred --HHHHHHHHHh--cCCcEEEEeccccc
Q 038733 253 --MKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 253 --~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.....+.+++ +++++|+|+||+..
T Consensus 217 ap~~a~aiAEyfr~~G~~VLlv~DdlTr 244 (485)
T CHL00059 217 APYTGAALAEYFMYRGRHTLIIYDDLSK 244 (485)
T ss_pred HHHHHhhHHHHHHHcCCCEEEEEcChhH
Confidence 1112234443 57999999999964
No 448
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.46 E-value=0.27 Score=47.63 Aligned_cols=34 Identities=9% Similarity=-0.166 Sum_probs=25.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|..|.|||||++.+..-. ......+++
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~ 61 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLE---MPRSGTLNI 61 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEE
Confidence 4689999999999999999999832 223345554
No 449
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.45 E-value=0.61 Score=42.67 Aligned_cols=79 Identities=10% Similarity=0.078 Sum_probs=44.8
Q ss_pred EEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCCCC-CHHHHHHHHHHHh
Q 038733 185 VAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIKDK-DYEMKKIILGEYL 262 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~~~-~~~~l~~~l~~~L 262 (519)
+-|.|..|.|||++|..+... .....+++.-...++.+ ..+ |....... |..+... ...++...+.+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R---~~~w~t~E~~~~l~~~l~~~- 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRR---PAHWRTIETPRDLVSALKEL- 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhC---CCCceEeecHHHHHHHHHhc-
Confidence 578999999999999988653 22356777777777654 444 54432221 1122222 123333333221
Q ss_pred cCCcEEEEeccc
Q 038733 263 MTKRYLIVLDDV 274 (519)
Q Consensus 263 ~~kr~LlVLDDv 274 (519)
. +.-.+++|.+
T Consensus 72 ~-~~~~VLIDcl 82 (169)
T cd00544 72 D-PGDVVLIDCL 82 (169)
T ss_pred C-CCCEEEEEcH
Confidence 2 2336888886
No 450
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.45 E-value=0.58 Score=45.94 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=42.0
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCC--CCHHHHHH-HHHHhcCCCCCCcC--CCCCCHHHHHHHH
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYH--YDADQILD-IVTVILLPFSMLSK--IKDKDYEMKKIIL 258 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~--~~~~~l~~-il~~l~~~~~~~~~--~~~~~~~~l~~~l 258 (519)
+|+|.|..|+||||+++.+... .+..=...+.++...- ++-...-. +......... -+. .+..+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~--l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~n-fdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHI--FAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRN-FSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCC-CCCCCcccccHHHHHHHH
Confidence 5899999999999999988762 2111011233332221 22222222 3332211110 011 2445677788888
Q ss_pred HHHhcCCc
Q 038733 259 GEYLMTKR 266 (519)
Q Consensus 259 ~~~L~~kr 266 (519)
+.+-+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 87777643
No 451
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.43 E-value=0.26 Score=47.40 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 452
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.42 E-value=0.17 Score=46.22 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=22.6
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCC
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYF 212 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F 212 (519)
+-|.++||.|+||||+.+.+.. ...-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 3477899999999999999988 454444
No 453
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=91.42 E-value=0.2 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.0
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-|.|+|.+|+|||||+..+.++
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887764
No 454
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.40 E-value=0.16 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.090 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+...
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999883
No 455
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.39 E-value=0.2 Score=46.33 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=22.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+|.|.|.+|.||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999873
No 456
>PTZ00088 adenylate kinase 1; Provisional
Probab=91.38 E-value=0.16 Score=49.02 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=18.9
Q ss_pred EEeeCCCCCCHHHHHHHHHh
Q 038733 185 VAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~ 204 (519)
|.|.|++|+||||+|+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999877
No 457
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=91.38 E-value=0.35 Score=51.49 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=54.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC-HHHHHH-HHHHhcC-CCC--C-Cc--CCCCCC---
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD-ADQILD-IVTVILL-PFS--M-LS--KIKDKD--- 250 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~-il~~l~~-~~~--~-~~--~~~~~~--- 250 (519)
-.-++|.|-.|+|||||+..+.... .+.+=+.++++-+++... +.++.. ++..-.. ... . .. -....+
T Consensus 161 GQR~gIfgg~GvGKs~L~~~~~~~~-~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~ 239 (494)
T CHL00060 161 GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 239 (494)
T ss_pred CCEEeeecCCCCChhHHHHHHHHHH-HHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCH
Confidence 4578999999999999999877641 111116788888876543 345555 4441100 000 0 00 000111
Q ss_pred -----HHHHHHHHHHHhc--CC-cEEEEeccccc
Q 038733 251 -----YEMKKIILGEYLM--TK-RYLIVLDDVWS 276 (519)
Q Consensus 251 -----~~~l~~~l~~~L~--~k-r~LlVLDDv~~ 276 (519)
.......+.++++ ++ ++||++||+-.
T Consensus 240 ~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 240 GARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 1233455777774 34 99999999854
No 458
>PF13245 AAA_19: Part of AAA domain
Probab=91.37 E-value=0.2 Score=39.31 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=17.4
Q ss_pred ceEEEeeCCCCCCHH-HHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKT-IFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKT-tLA~~v~~ 204 (519)
-+++.|.|.+|.||| |+++.+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457788999999999 45555555
No 459
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.36 E-value=0.38 Score=45.29 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.7
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+++|.+..+..+.-.... ..=+.++|.+|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688888888877666654 34688999999999999999865
No 460
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.34 E-value=0.82 Score=41.90 Aligned_cols=81 Identities=10% Similarity=0.074 Sum_probs=43.7
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCCCC-CHHHHHHHHHHH
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIKDK-DYEMKKIILGEY 261 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~~~-~~~~l~~~l~~~ 261 (519)
++.|.|.+|+||||+|..+... ... ..+++.....++. +..+ |........ ..+... ...++...+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~~---~~~~iat~~~~~~-e~~~ri~~h~~~R~---~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SGL---QVLYIATAQPFDD-EMAARIAHHRQRRP---AHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cCC---CcEeCcCCCCChH-HHHHHHHHHHhcCC---CCCeEecccccHHHHHHhh
Confidence 6889999999999999988763 111 1234443444443 4444 544433221 122211 223445555544
Q ss_pred hcCCcEEEEeccc
Q 038733 262 LMTKRYLIVLDDV 274 (519)
Q Consensus 262 L~~kr~LlVLDDv 274 (519)
..+.. ++++|.+
T Consensus 74 ~~~~~-~VlID~L 85 (170)
T PRK05800 74 AAPGR-CVLVDCL 85 (170)
T ss_pred cCCCC-EEEehhH
Confidence 43323 6888876
No 461
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=91.33 E-value=0.48 Score=47.59 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=52.5
Q ss_pred CCccccchhHHHHHHHHHhcC--CCcceEEEeeCCCCCCHHHHHHHHHhc-cCccCCCcEEEEEEcCCCCCHHH-HHH-H
Q 038733 158 NRNMVGLDDRMEELLDLLIEG--PTQLSVVAIPDSIGLDKTIFTAEAYNS-SYVKHYFDYLAWIPSPYHYDADQ-ILD-I 232 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~-~~v~~~F~~~~wv~vs~~~~~~~-l~~-i 232 (519)
...++|-.++..++-.|+... .++...+.|+|+.|.|||+|...+..+ .++.++ ..-|...+....++ .++ |
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHH
Confidence 446899999999999988753 223556778999999999999888776 233333 34455555444433 344 6
Q ss_pred HHHhcC
Q 038733 233 VTVILL 238 (519)
Q Consensus 233 l~~l~~ 238 (519)
.+++..
T Consensus 100 ~rql~~ 105 (408)
T KOG2228|consen 100 TRQLAL 105 (408)
T ss_pred HHHHHH
Confidence 666654
No 462
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=91.32 E-value=0.17 Score=45.43 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=18.4
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|.++|.+|+|||||++.+.++
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999887664
No 463
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.32 E-value=0.2 Score=45.04 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|.+|+|||||+..+..+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Confidence 346789999999999999988654
No 464
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.32 E-value=0.16 Score=48.32 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 465
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.32 E-value=0.16 Score=48.58 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999883
No 466
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.31 E-value=0.17 Score=48.78 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999999884
No 467
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.30 E-value=0.16 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=18.6
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999998776655
No 468
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=91.30 E-value=0.17 Score=50.65 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|.++|.+|+||||+|+.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~ 24 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAA 24 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5788899999999999999887
No 469
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.29 E-value=0.17 Score=47.72 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999984
No 470
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.27 E-value=0.17 Score=47.59 Aligned_cols=24 Identities=17% Similarity=-0.067 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+..-
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999983
No 471
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=91.26 E-value=0.15 Score=47.50 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+|+|-|+.|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 472
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=91.25 E-value=0.21 Score=45.21 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.4
Q ss_pred EEeeCCCCCCHHHHHHHHHhcc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~~ 206 (519)
|.++|.+|+|||||.+.+.++.
T Consensus 4 i~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999987653
No 473
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.25 E-value=0.3 Score=45.80 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=22.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999884
No 474
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=91.23 E-value=0.17 Score=48.47 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999884
No 475
>COG4240 Predicted kinase [General function prediction only]
Probab=91.23 E-value=0.65 Score=44.13 Aligned_cols=82 Identities=13% Similarity=-0.006 Sum_probs=48.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcC---CCCCCcCCCCCCHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILL---PFSMLSKIKDKDYEMKKI 256 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~---~~~~~~~~~~~~~~~l~~ 256 (519)
..-+++|.|+-|.||||++..+++.-.-+.. ...+..+..+-+-...-.. ++++... ..+ . ....|..-...
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RG-l--pGTHD~tlgln 124 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRG-L--PGTHDPTLGLN 124 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccC-C--CCCCchHHHHH
Confidence 4779999999999999999999995333322 3555555544333333333 5555321 111 1 13345666666
Q ss_pred HHHHHhcCCc
Q 038733 257 ILGEYLMTKR 266 (519)
Q Consensus 257 ~l~~~L~~kr 266 (519)
.|....+++.
T Consensus 125 VLnai~~g~~ 134 (300)
T COG4240 125 VLNAIARGGP 134 (300)
T ss_pred HHHHHhcCCC
Confidence 6666666653
No 476
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.23 E-value=0.14 Score=49.65 Aligned_cols=32 Identities=13% Similarity=-0.080 Sum_probs=20.9
Q ss_pred eeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc
Q 038733 187 IPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220 (519)
Q Consensus 187 I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v 220 (519)
|+|++|+||||+++.+.+.... .-...+-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~--~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES--NGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT--T-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHh--ccCCceEEEc
Confidence 6899999999999999885333 2233444443
No 477
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.49 Score=51.14 Aligned_cols=100 Identities=14% Similarity=0.055 Sum_probs=57.9
Q ss_pred CCCccccchhHHHHHHHHHh---cC--------CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC
Q 038733 157 KNRNMVGLDDRMEELLDLLI---EG--------PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD 225 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~---~~--------~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~ 225 (519)
.-.++.|.+..++.+.+.+. .. -...+.+-++|++|.|||.||+++.+ .....|-.+.+-....
T Consensus 240 ~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~~l~s--- 314 (494)
T COG0464 240 TLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGSELLS--- 314 (494)
T ss_pred ceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCHHHhc---
Confidence 33456666666655554443 21 13456888999999999999999999 4555553322111100
Q ss_pred HHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccCCCC
Q 038733 226 ADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWSTDLK 280 (519)
Q Consensus 226 ~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~~~w 280 (519)
..-......+.......-+...+.|.+|.+..--.+
T Consensus 315 -------------------k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~ 350 (494)
T COG0464 315 -------------------KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASG 350 (494)
T ss_pred -------------------cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhcc
Confidence 001112333444444444577899999998665444
No 478
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.20 E-value=0.17 Score=49.33 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|+|||||++.+...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 479
>PRK14531 adenylate kinase; Provisional
Probab=91.20 E-value=0.19 Score=46.61 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=19.4
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.|.|+|++|+||||+++.+..
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 480
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.19 E-value=0.3 Score=52.02 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|.+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999997653 235677899999999999988876
No 481
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.18 E-value=0.17 Score=49.57 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999973
No 482
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=91.18 E-value=0.18 Score=44.73 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=19.1
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|+|+|.+|+|||||...+.+.
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999888875
No 483
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=91.15 E-value=0.18 Score=48.59 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999883
No 484
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.13 E-value=0.29 Score=47.45 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999983
No 485
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=91.12 E-value=0.28 Score=50.96 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=25.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDY 214 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~ 214 (519)
.-+|+|+|..|+|||||+..+.. +.+..+..
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~--~l~~~~~V 35 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVR--RLSERFSV 35 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH--HHhhCceE
Confidence 56999999999999999999998 44444443
No 486
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=0.28 Score=52.01 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=37.7
Q ss_pred CCccccchh---HHHHHHHHHhcCC-------CcceEEEeeCCCCCCHHHHHHHHHhccCc
Q 038733 158 NRNMVGLDD---RMEELLDLLIEGP-------TQLSVVAIPDSIGLDKTIFTAEAYNSSYV 208 (519)
Q Consensus 158 ~~~~vGr~~---~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~~~v 208 (519)
-.++-|-|+ ++++|+++|.+.. .-.+=|-.+|++|.|||-||++|.....|
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 345667554 5677788887652 23567889999999999999999985544
No 487
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.07 E-value=0.39 Score=49.72 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=38.3
Q ss_pred CCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 157 KNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+++|-+..++.+.+.+..+. -..-+-++|+.|+||||+|..+..
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 34579999999999999888754 244688999999999999977665
No 488
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.05 E-value=2.2 Score=43.59 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=30.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCC
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHY 224 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~ 224 (519)
-..++|.|..|+|||+|++.+.+.. +-+.++++-+++..
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg 195 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERG 195 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCCh
Confidence 4588999999999999999999842 23577788777643
No 489
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.05 E-value=0.33 Score=43.10 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=29.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcE--EEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDY--LAWIP 219 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~--~~wv~ 219 (519)
--|+.+.|+.|+||+||..-+.. .....|++ .+|+.
T Consensus 28 GeivtlMGPSGcGKSTLls~~~G--~La~~F~~~G~~~l~ 65 (213)
T COG4136 28 GEIVTLMGPSGCGKSTLLSWMIG--ALAGQFSCTGELWLN 65 (213)
T ss_pred CcEEEEECCCCccHHHHHHHHHh--hcccCcceeeEEEEC
Confidence 45899999999999999988887 56667765 77875
No 490
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.05 E-value=0.16 Score=45.37 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.1
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++++.|.+|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999888763
No 491
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=91.03 E-value=0.19 Score=44.90 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=20.1
Q ss_pred EEEeeCCCCCCHHHHHHHHHhcc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
-|.|+|.+|+|||||++.+.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999988864
No 492
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=91.03 E-value=0.27 Score=50.08 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=35.0
Q ss_pred CCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 157 KNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+-..++|.+..++.+.-.+.... ..-+-+.|..|+||||+|+.+.+
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~--~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPG--IGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccC--CCcEEEEcCCCCCHHHHHHHHHH
Confidence 34578999998888775554322 33478899999999999999865
No 493
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.02 E-value=0.65 Score=46.97 Aligned_cols=40 Identities=8% Similarity=-0.041 Sum_probs=29.5
Q ss_pred cccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 161 MVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
++=..+....++.++... +-|.+.|..|+||||+|+.+..
T Consensus 47 y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred ccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHH
Confidence 333444555666666542 3588999999999999999988
No 494
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=91.00 E-value=0.31 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=22.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.++..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999999999984
No 495
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=91.00 E-value=0.32 Score=47.06 Aligned_cols=34 Identities=15% Similarity=-0.042 Sum_probs=26.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|..|.|||||++.+.... ......+++
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~---~~~~G~i~~ 60 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLE---EITSGDLIV 60 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEE
Confidence 4689999999999999999999832 233455554
No 496
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=90.98 E-value=0.18 Score=44.17 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.4
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-|.|+|.+|+|||||...+.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999988764
No 497
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=90.98 E-value=0.35 Score=50.71 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=36.0
Q ss_pred CCCccccchhHHHHHHHHHh-------c---CC--C----cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 157 KNRNMVGLDDRMEELLDLLI-------E---GP--T----QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~-------~---~~--~----~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
....++|.++.++.+...+. . .. . ....+.++|++|+|||+||+.+..
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 44568999999988876552 1 11 1 135788999999999999999987
No 498
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=90.98 E-value=0.17 Score=48.70 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 45899999999999999999987
No 499
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=90.97 E-value=0.2 Score=47.91 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=20.6
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|+|.|+.|+||||+|+.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAE 24 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 500
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=90.97 E-value=0.38 Score=43.23 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=29.0
Q ss_pred cchhHHHHHHHHHhcC-CCcceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 163 GLDDRMEELLDLLIEG-PTQLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 163 Gr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
|.+.-++.|.+.+... ......++++|++|+|||||...+..+.
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence 4444455555443211 1124567899999999999999998753
Done!