Query 038733
Match_columns 519
No_of_seqs 299 out of 2854
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 03:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.4E-45 2.9E-49 393.7 19.4 257 162-426 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-37 9.1E-42 364.0 20.7 260 154-424 119-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 8.2E-35 2.8E-39 323.2 18.0 247 160-418 129-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-32 5.4E-37 300.1 19.6 254 156-421 121-449 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.7 4.2E-17 1.4E-21 138.5 8.9 83 3-98 1-85 (115)
6 1w5s_A Origin recognition comp 99.3 2.5E-11 8.5E-16 125.7 13.3 236 157-397 20-372 (412)
7 2qen_A Walker-type ATPase; unk 99.2 2.1E-10 7.3E-15 115.6 18.2 239 154-417 7-348 (350)
8 2fna_A Conserved hypothetical 99.2 9.1E-10 3.1E-14 111.2 18.2 237 154-417 8-356 (357)
9 1fnn_A CDC6P, cell division co 99.0 3.3E-08 1.1E-12 101.1 21.3 259 158-423 16-386 (389)
10 2v1u_A Cell division control p 98.9 5.7E-08 1.9E-12 99.1 18.6 116 157-276 17-141 (387)
11 2qby_B CDC6 homolog 3, cell di 98.6 7.7E-08 2.6E-12 98.3 9.6 115 159-276 20-144 (384)
12 2qby_A CDC6 homolog 1, cell di 98.5 1.3E-07 4.4E-12 96.3 6.5 114 157-276 18-139 (386)
13 1njg_A DNA polymerase III subu 98.3 3.6E-06 1.2E-10 79.2 10.4 47 158-205 22-68 (250)
14 1hqc_A RUVB; extended AAA-ATPa 98.1 4.7E-06 1.6E-10 82.9 9.0 110 158-273 11-125 (324)
15 1jbk_A CLPB protein; beta barr 98.1 4.2E-06 1.4E-10 75.8 6.9 46 158-205 21-66 (195)
16 3te6_A Regulatory protein SIR3 98.0 1.4E-05 4.7E-10 79.5 9.0 114 160-277 21-144 (318)
17 2chg_A Replication factor C sm 98.0 2.1E-05 7.3E-10 72.8 9.4 46 158-205 16-61 (226)
18 1sxj_B Activator 1 37 kDa subu 97.7 5.8E-05 2E-09 74.7 7.3 46 158-205 20-65 (323)
19 2w58_A DNAI, primosome compone 97.4 0.00031 1.1E-08 64.6 7.9 53 166-220 36-90 (202)
20 3h4m_A Proteasome-activating n 97.4 0.0004 1.4E-08 67.5 8.8 51 155-205 13-74 (285)
21 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00052 1.8E-08 65.7 8.9 49 157-205 4-62 (262)
22 1iqp_A RFCS; clamp loader, ext 97.3 0.00023 7.8E-09 70.4 6.1 46 158-205 24-69 (327)
23 2p65_A Hypothetical protein PF 97.3 0.00018 6.2E-09 64.6 4.8 46 158-205 21-66 (187)
24 3ec2_A DNA replication protein 97.3 0.00037 1.3E-08 62.9 6.7 42 164-205 19-61 (180)
25 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.0018 6.3E-08 64.4 11.2 50 156-205 9-68 (322)
26 3b9p_A CG5977-PA, isoform A; A 97.2 0.00099 3.4E-08 65.2 9.0 49 157-205 19-77 (297)
27 1jr3_A DNA polymerase III subu 97.1 0.0014 4.8E-08 66.1 10.1 46 159-205 16-61 (373)
28 1lv7_A FTSH; alpha/beta domain 97.1 0.0017 6E-08 62.0 10.0 49 157-205 10-68 (257)
29 3d8b_A Fidgetin-like protein 1 97.1 0.00084 2.9E-08 67.8 7.4 49 157-205 82-140 (357)
30 1sxj_A Activator 1 95 kDa subu 96.9 0.0022 7.5E-08 68.2 9.2 49 157-205 37-100 (516)
31 3eie_A Vacuolar protein sortin 96.9 0.00097 3.3E-08 66.3 6.0 51 155-205 14-74 (322)
32 3vfd_A Spastin; ATPase, microt 96.9 0.0023 7.9E-08 65.3 8.7 50 156-205 112-171 (389)
33 3n70_A Transport activator; si 96.9 0.0007 2.4E-08 59.0 4.0 46 160-205 2-47 (145)
34 3cf0_A Transitional endoplasmi 96.8 0.0034 1.2E-07 61.7 9.4 49 157-205 13-72 (301)
35 3u61_B DNA polymerase accessor 96.8 0.006 2.1E-07 60.3 11.1 48 157-205 24-71 (324)
36 3syl_A Protein CBBX; photosynt 96.8 0.0016 5.6E-08 63.9 6.6 46 160-205 32-90 (309)
37 3pvs_A Replication-associated 96.8 0.003 1E-07 65.8 8.7 47 157-205 24-73 (447)
38 1d2n_A N-ethylmaleimide-sensit 96.6 0.0056 1.9E-07 59.0 9.0 48 158-205 32-87 (272)
39 1qvr_A CLPB protein; coiled co 96.6 0.0028 9.5E-08 71.6 7.7 47 157-205 168-214 (854)
40 2qp9_X Vacuolar protein sortin 96.5 0.0049 1.7E-07 62.1 8.0 49 157-205 49-107 (355)
41 4b4t_L 26S protease subunit RP 96.4 0.008 2.7E-07 62.1 9.1 50 156-205 178-238 (437)
42 2z4s_A Chromosomal replication 96.4 0.0043 1.5E-07 64.5 7.1 96 160-278 106-207 (440)
43 4b4t_K 26S protease regulatory 96.4 0.0074 2.5E-07 62.2 8.7 50 156-205 169-229 (428)
44 3pxg_A Negative regulator of g 96.4 0.0028 9.7E-08 66.4 5.6 46 158-205 179-224 (468)
45 2zan_A Vacuolar protein sortin 96.4 0.007 2.4E-07 62.9 8.5 50 156-205 131-190 (444)
46 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0093 3.2E-07 66.4 10.0 47 157-205 184-230 (758)
47 3pfi_A Holliday junction ATP-d 96.3 0.0024 8.1E-08 63.6 4.5 49 157-205 27-78 (338)
48 2cvh_A DNA repair and recombin 96.3 0.02 6.8E-07 52.8 10.6 90 182-276 20-116 (220)
49 4b4t_J 26S protease regulatory 96.3 0.0067 2.3E-07 61.8 7.7 52 154-205 143-205 (405)
50 2ce7_A Cell division protein F 96.3 0.0098 3.4E-07 62.3 9.1 48 158-205 15-72 (476)
51 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0029 1E-07 62.5 4.8 69 182-276 123-193 (331)
52 4b4t_H 26S protease regulatory 96.2 0.01 3.5E-07 61.4 8.6 49 157-205 207-266 (467)
53 3hu3_A Transitional endoplasmi 96.2 0.0036 1.2E-07 66.0 5.2 48 158-205 203-261 (489)
54 1n0w_A DNA repair protein RAD5 96.2 0.0099 3.4E-07 55.8 7.9 95 182-276 24-130 (243)
55 3co5_A Putative two-component 96.2 0.00091 3.1E-08 58.1 0.5 48 158-205 3-50 (143)
56 1sxj_D Activator 1 41 kDa subu 96.2 0.0038 1.3E-07 62.3 5.1 47 157-205 35-81 (353)
57 3bos_A Putative DNA replicatio 96.2 0.0055 1.9E-07 57.2 5.8 59 159-221 28-89 (242)
58 4b4t_M 26S protease regulatory 96.1 0.0099 3.4E-07 61.4 7.7 52 154-205 176-238 (434)
59 1ypw_A Transitional endoplasmi 96.1 0.0055 1.9E-07 68.7 6.2 48 157-204 202-260 (806)
60 3uk6_A RUVB-like 2; hexameric 96.1 0.0053 1.8E-07 61.8 5.5 48 158-205 43-93 (368)
61 3c8u_A Fructokinase; YP_612366 96.0 0.0055 1.9E-07 56.6 4.7 39 167-205 7-45 (208)
62 1v5w_A DMC1, meiotic recombina 96.0 0.04 1.4E-06 55.1 11.3 94 181-274 121-228 (343)
63 2x8a_A Nuclear valosin-contain 95.9 0.024 8.2E-07 54.8 9.2 48 157-205 8-67 (274)
64 2bjv_A PSP operon transcriptio 95.9 0.0045 1.5E-07 59.4 4.0 47 159-205 6-52 (265)
65 1in4_A RUVB, holliday junction 95.9 0.0048 1.6E-07 61.6 4.2 48 158-205 24-74 (334)
66 2z43_A DNA repair and recombin 95.9 0.018 6E-07 57.2 8.1 93 182-274 107-212 (324)
67 2chq_A Replication factor C sm 95.8 0.0047 1.6E-07 60.6 3.8 46 158-205 16-61 (319)
68 3t15_A Ribulose bisphosphate c 95.8 0.0058 2E-07 59.8 4.3 25 181-205 35-59 (293)
69 1ofh_A ATP-dependent HSL prote 95.8 0.0054 1.9E-07 59.9 3.9 47 159-205 15-73 (310)
70 4b4t_I 26S protease regulatory 95.7 0.022 7.6E-07 58.4 8.3 50 156-205 179-239 (437)
71 3cf2_A TER ATPase, transitiona 95.7 0.013 4.5E-07 65.0 7.1 50 156-205 201-261 (806)
72 1rz3_A Hypothetical protein rb 95.7 0.01 3.6E-07 54.4 5.3 41 164-204 3-44 (201)
73 3pxi_A Negative regulator of g 95.7 0.0087 3E-07 66.6 5.6 46 158-205 179-224 (758)
74 2r62_A Cell division protease 95.6 0.0074 2.5E-07 57.9 4.2 49 157-205 9-67 (268)
75 2dhr_A FTSH; AAA+ protein, hex 95.6 0.026 9E-07 59.4 8.6 50 156-205 28-87 (499)
76 1sxj_E Activator 1 40 kDa subu 95.6 0.0069 2.4E-07 60.6 4.0 44 159-204 14-58 (354)
77 1ojl_A Transcriptional regulat 95.6 0.0079 2.7E-07 59.2 4.2 47 159-205 2-48 (304)
78 3hr8_A Protein RECA; alpha and 95.6 0.023 7.8E-07 57.1 7.5 90 181-276 60-150 (356)
79 2i1q_A DNA repair and recombin 95.5 0.023 7.7E-07 56.3 7.4 94 181-274 97-213 (322)
80 3lw7_A Adenylate kinase relate 95.5 0.0069 2.4E-07 53.4 3.0 20 183-202 2-21 (179)
81 4fcw_A Chaperone protein CLPB; 95.4 0.0087 3E-07 58.6 3.9 46 160-205 18-70 (311)
82 3e70_C DPA, signal recognition 95.4 0.029 9.8E-07 55.8 7.7 25 181-205 128-152 (328)
83 1odf_A YGR205W, hypothetical 3 95.4 0.016 5.6E-07 56.6 5.8 83 179-264 28-117 (290)
84 1sxj_C Activator 1 40 kDa subu 95.4 0.012 4E-07 58.8 4.8 46 158-205 24-69 (340)
85 3hws_A ATP-dependent CLP prote 95.3 0.014 4.7E-07 58.8 4.9 46 160-205 16-74 (363)
86 1u94_A RECA protein, recombina 95.2 0.028 9.6E-07 56.5 7.0 88 182-275 63-151 (356)
87 1l8q_A Chromosomal replication 95.2 0.02 7E-07 56.5 5.7 38 168-205 23-60 (324)
88 2zr9_A Protein RECA, recombina 95.2 0.035 1.2E-06 55.7 7.4 90 181-276 60-150 (349)
89 3kb2_A SPBC2 prophage-derived 95.1 0.011 3.6E-07 52.3 3.2 22 183-204 2-23 (173)
90 1zp6_A Hypothetical protein AT 95.1 0.011 3.7E-07 53.4 3.2 24 182-205 9-32 (191)
91 1pzn_A RAD51, DNA repair and r 95.1 0.039 1.3E-06 55.4 7.5 95 181-275 130-241 (349)
92 1kgd_A CASK, peripheral plasma 95.1 0.012 3.9E-07 53.1 3.3 24 182-205 5-28 (180)
93 2c9o_A RUVB-like 1; hexameric 95.1 0.023 7.8E-07 59.2 5.9 48 158-205 36-86 (456)
94 1qhx_A CPT, protein (chloramph 95.1 0.012 4E-07 52.5 3.3 22 183-204 4-25 (178)
95 1ly1_A Polynucleotide kinase; 95.0 0.014 4.7E-07 52.0 3.6 22 183-204 3-24 (181)
96 3vaa_A Shikimate kinase, SK; s 95.0 0.012 4.3E-07 53.7 3.3 23 182-204 25-47 (199)
97 1kag_A SKI, shikimate kinase I 95.0 0.011 3.6E-07 52.5 2.7 22 183-204 5-26 (173)
98 3lda_A DNA repair protein RAD5 94.8 0.051 1.8E-06 55.5 7.7 57 182-238 178-238 (400)
99 1ixz_A ATP-dependent metallopr 94.8 0.018 6E-07 54.8 4.0 49 157-205 14-72 (254)
100 3uie_A Adenylyl-sulfate kinase 94.8 0.018 6.1E-07 52.7 3.7 24 182-205 25-48 (200)
101 1xp8_A RECA protein, recombina 94.8 0.054 1.8E-06 54.7 7.6 88 182-275 74-162 (366)
102 2kjq_A DNAA-related protein; s 94.8 0.013 4.5E-07 51.2 2.6 24 182-205 36-59 (149)
103 1iy2_A ATP-dependent metallopr 94.8 0.023 7.8E-07 54.9 4.6 50 156-205 37-96 (278)
104 3tr0_A Guanylate kinase, GMP k 94.8 0.015 5.3E-07 53.0 3.3 24 182-205 7-30 (205)
105 2px0_A Flagellar biosynthesis 94.8 0.067 2.3E-06 52.3 8.0 25 181-205 104-128 (296)
106 2r44_A Uncharacterized protein 94.8 0.018 6.2E-07 57.0 4.0 42 159-204 27-68 (331)
107 2gno_A DNA polymerase III, gam 94.7 0.14 4.7E-06 50.3 10.2 41 163-205 1-41 (305)
108 2xxa_A Signal recognition part 94.7 0.14 4.8E-06 52.8 10.6 38 167-204 78-122 (433)
109 3trf_A Shikimate kinase, SK; a 94.7 0.017 5.7E-07 51.9 3.2 23 182-204 5-27 (185)
110 1knq_A Gluconate kinase; ALFA/ 94.7 0.019 6.4E-07 51.1 3.5 23 182-204 8-30 (175)
111 2ga8_A Hypothetical 39.9 kDa p 94.6 0.035 1.2E-06 55.5 5.6 43 162-204 2-46 (359)
112 4eun_A Thermoresistant glucoki 94.6 0.018 6.1E-07 52.7 3.3 23 182-204 29-51 (200)
113 2bdt_A BH3686; alpha-beta prot 94.6 0.02 6.9E-07 51.6 3.5 22 183-204 3-24 (189)
114 1nks_A Adenylate kinase; therm 94.6 0.018 6.2E-07 51.7 3.2 22 183-204 2-23 (194)
115 3nbx_X ATPase RAVA; AAA+ ATPas 94.5 0.034 1.2E-06 58.6 5.5 43 159-205 22-64 (500)
116 3t61_A Gluconokinase; PSI-biol 94.5 0.015 5.2E-07 53.1 2.5 24 182-205 18-41 (202)
117 4gp7_A Metallophosphoesterase; 94.5 0.019 6.4E-07 51.2 3.0 23 182-204 9-31 (171)
118 2jaq_A Deoxyguanosine kinase; 94.5 0.02 6.9E-07 52.0 3.3 21 184-204 2-22 (205)
119 1kht_A Adenylate kinase; phosp 94.5 0.02 6.9E-07 51.4 3.3 22 183-204 4-25 (192)
120 2j41_A Guanylate kinase; GMP, 94.4 0.02 6.8E-07 52.2 3.2 24 182-205 6-29 (207)
121 3a00_A Guanylate kinase, GMP k 94.4 0.017 5.8E-07 52.2 2.6 23 183-205 2-24 (186)
122 1cke_A CK, MSSA, protein (cyti 94.4 0.021 7.2E-07 53.0 3.3 22 183-204 6-27 (227)
123 4a74_A DNA repair and recombin 94.4 0.078 2.7E-06 49.0 7.3 55 182-236 25-83 (231)
124 3asz_A Uridine kinase; cytidin 94.4 0.021 7.2E-07 52.5 3.3 23 182-204 6-28 (211)
125 1ye8_A Protein THEP1, hypothet 94.4 0.022 7.5E-07 51.3 3.3 22 184-205 2-23 (178)
126 1um8_A ATP-dependent CLP prote 94.3 0.038 1.3E-06 55.8 5.3 47 159-205 21-95 (376)
127 3tau_A Guanylate kinase, GMP k 94.3 0.025 8.5E-07 52.1 3.5 24 182-205 8-31 (208)
128 2rhm_A Putative kinase; P-loop 94.3 0.024 8.2E-07 51.1 3.4 23 182-204 5-27 (193)
129 2qt1_A Nicotinamide riboside k 94.3 0.024 8.3E-07 51.9 3.4 24 181-204 20-43 (207)
130 3dm5_A SRP54, signal recogniti 94.3 1.1 3.7E-05 46.2 16.1 24 181-204 99-122 (443)
131 1zuh_A Shikimate kinase; alpha 94.3 0.024 8.4E-07 50.0 3.3 24 181-204 6-29 (168)
132 2if2_A Dephospho-COA kinase; a 94.2 0.022 7.5E-07 52.0 3.0 22 183-204 2-23 (204)
133 2ze6_A Isopentenyl transferase 94.2 0.026 8.9E-07 53.9 3.6 23 183-205 2-24 (253)
134 3iij_A Coilin-interacting nucl 94.2 0.02 7E-07 51.1 2.6 23 182-204 11-33 (180)
135 1lvg_A Guanylate kinase, GMP k 94.2 0.021 7.1E-07 52.3 2.7 23 182-204 4-26 (198)
136 1jjv_A Dephospho-COA kinase; P 94.2 0.027 9.2E-07 51.6 3.5 22 183-204 3-24 (206)
137 2qor_A Guanylate kinase; phosp 94.2 0.021 7E-07 52.4 2.7 24 182-205 12-35 (204)
138 1tev_A UMP-CMP kinase; ploop, 94.2 0.028 9.7E-07 50.5 3.6 23 182-204 3-25 (196)
139 1uf9_A TT1252 protein; P-loop, 94.1 0.028 9.4E-07 51.1 3.5 24 181-204 7-30 (203)
140 3tqc_A Pantothenate kinase; bi 94.1 0.046 1.6E-06 54.1 5.3 79 180-265 90-171 (321)
141 1via_A Shikimate kinase; struc 94.1 0.022 7.6E-07 50.7 2.7 22 183-204 5-26 (175)
142 2hf9_A Probable hydrogenase ni 94.1 0.047 1.6E-06 50.5 5.0 36 168-205 26-61 (226)
143 1ukz_A Uridylate kinase; trans 94.1 0.033 1.1E-06 50.8 3.8 24 181-204 14-37 (203)
144 1a5t_A Delta prime, HOLB; zinc 94.0 0.23 8E-06 49.1 10.4 40 165-205 8-47 (334)
145 2yvu_A Probable adenylyl-sulfa 94.0 0.032 1.1E-06 50.2 3.6 25 181-205 12-36 (186)
146 3cm0_A Adenylate kinase; ATP-b 94.0 0.031 1.1E-06 50.0 3.5 23 182-204 4-26 (186)
147 1y63_A LMAJ004144AAA protein; 94.0 0.033 1.1E-06 50.2 3.5 23 182-204 10-32 (184)
148 1gvn_B Zeta; postsegregational 94.0 0.056 1.9E-06 52.6 5.4 38 167-204 15-55 (287)
149 1znw_A Guanylate kinase, GMP k 93.9 0.029 1E-06 51.6 3.2 24 182-205 20-43 (207)
150 2c95_A Adenylate kinase 1; tra 93.9 0.029 9.9E-07 50.6 3.1 23 182-204 9-31 (196)
151 2iyv_A Shikimate kinase, SK; t 93.9 0.023 7.9E-07 50.9 2.4 22 183-204 3-24 (184)
152 3tlx_A Adenylate kinase 2; str 93.9 0.049 1.7E-06 51.5 4.8 38 167-204 14-51 (243)
153 3aez_A Pantothenate kinase; tr 93.9 0.035 1.2E-06 54.8 3.8 25 181-205 89-113 (312)
154 2bbw_A Adenylate kinase 4, AK4 93.9 0.03 1E-06 52.9 3.3 23 182-204 27-49 (246)
155 2plr_A DTMP kinase, probable t 93.9 0.034 1.2E-06 50.8 3.6 24 182-205 4-27 (213)
156 1e6c_A Shikimate kinase; phosp 93.9 0.027 9.1E-07 49.8 2.7 22 183-204 3-24 (173)
157 1g8p_A Magnesium-chelatase 38 93.9 0.031 1.1E-06 55.5 3.5 46 158-205 23-68 (350)
158 2wsm_A Hydrogenase expression/ 93.8 0.044 1.5E-06 50.5 4.3 41 163-205 13-53 (221)
159 1uj2_A Uridine-cytidine kinase 93.8 0.035 1.2E-06 52.8 3.6 24 181-204 21-44 (252)
160 3a4m_A L-seryl-tRNA(SEC) kinas 93.8 0.037 1.3E-06 52.9 3.7 23 182-204 4-26 (260)
161 2jeo_A Uridine-cytidine kinase 93.7 0.039 1.3E-06 52.2 3.8 23 182-204 25-47 (245)
162 2pt5_A Shikimate kinase, SK; a 93.7 0.037 1.3E-06 48.7 3.4 21 184-204 2-22 (168)
163 2bwj_A Adenylate kinase 5; pho 93.7 0.03 1E-06 50.6 2.9 23 182-204 12-34 (199)
164 2p5t_B PEZT; postsegregational 93.7 0.051 1.7E-06 51.7 4.5 40 165-204 12-54 (253)
165 1qf9_A UMP/CMP kinase, protein 93.7 0.034 1.2E-06 49.9 3.1 23 182-204 6-28 (194)
166 1z6g_A Guanylate kinase; struc 93.7 0.028 9.6E-07 52.3 2.6 24 182-205 23-46 (218)
167 2pbr_A DTMP kinase, thymidylat 93.7 0.036 1.2E-06 49.8 3.3 21 184-204 2-22 (195)
168 2yhs_A FTSY, cell division pro 93.6 0.23 7.9E-06 51.9 9.6 43 181-226 292-334 (503)
169 3ney_A 55 kDa erythrocyte memb 93.6 0.038 1.3E-06 50.7 3.3 25 181-205 18-42 (197)
170 2vli_A Antibiotic resistance p 93.6 0.029 9.8E-07 50.1 2.4 23 182-204 5-27 (183)
171 1xjc_A MOBB protein homolog; s 93.6 0.04 1.4E-06 49.1 3.3 24 181-204 3-26 (169)
172 4e22_A Cytidylate kinase; P-lo 93.6 0.038 1.3E-06 52.7 3.3 23 182-204 27-49 (252)
173 2cdn_A Adenylate kinase; phosp 93.6 0.04 1.4E-06 50.2 3.3 23 182-204 20-42 (201)
174 1htw_A HI0065; nucleotide-bind 93.6 0.044 1.5E-06 48.3 3.5 24 182-205 33-56 (158)
175 1ex7_A Guanylate kinase; subst 93.5 0.026 8.9E-07 51.3 2.0 22 183-204 2-23 (186)
176 2grj_A Dephospho-COA kinase; T 93.5 0.045 1.5E-06 49.9 3.5 24 181-204 11-34 (192)
177 3p32_A Probable GTPase RV1496/ 93.5 0.077 2.6E-06 53.2 5.6 37 168-204 65-101 (355)
178 3b85_A Phosphate starvation-in 93.4 0.073 2.5E-06 49.2 5.0 23 183-205 23-45 (208)
179 2qgz_A Helicase loader, putati 93.4 0.066 2.3E-06 52.6 4.9 41 165-205 134-175 (308)
180 2pez_A Bifunctional 3'-phospho 93.4 0.049 1.7E-06 48.6 3.6 23 182-204 5-27 (179)
181 2z0h_A DTMP kinase, thymidylat 93.3 0.045 1.5E-06 49.4 3.3 22 184-205 2-23 (197)
182 3io5_A Recombination and repai 93.3 0.18 6.3E-06 49.5 7.7 90 184-277 30-123 (333)
183 1s96_A Guanylate kinase, GMP k 93.3 0.045 1.6E-06 51.0 3.3 24 182-205 16-39 (219)
184 3tif_A Uncharacterized ABC tra 93.2 0.075 2.6E-06 50.1 4.7 34 182-218 31-64 (235)
185 1fx0_B ATP synthase beta chain 93.2 0.16 5.6E-06 52.8 7.6 93 182-275 165-276 (498)
186 2v54_A DTMP kinase, thymidylat 93.2 0.049 1.7E-06 49.5 3.3 23 182-204 4-26 (204)
187 2onk_A Molybdate/tungstate ABC 93.1 0.089 3E-06 49.7 5.2 22 183-204 25-46 (240)
188 2wwf_A Thymidilate kinase, put 93.1 0.042 1.4E-06 50.3 2.8 24 182-205 10-33 (212)
189 3ice_A Transcription terminati 93.1 0.16 5.4E-06 51.4 7.1 101 170-276 163-272 (422)
190 1nn5_A Similar to deoxythymidy 93.1 0.047 1.6E-06 50.0 3.1 23 182-204 9-31 (215)
191 1m7g_A Adenylylsulfate kinase; 93.1 0.054 1.8E-06 49.8 3.5 23 182-204 25-47 (211)
192 1vht_A Dephospho-COA kinase; s 93.1 0.06 2.1E-06 49.7 3.8 23 182-204 4-26 (218)
193 2ehv_A Hypothetical protein PH 93.1 0.048 1.7E-06 51.2 3.2 23 182-204 30-52 (251)
194 3kl4_A SRP54, signal recogniti 93.1 0.4 1.4E-05 49.3 10.3 25 181-205 96-120 (433)
195 1zu4_A FTSY; GTPase, signal re 93.1 0.1 3.5E-06 51.6 5.6 24 181-204 104-127 (320)
196 2i3b_A HCR-ntpase, human cance 93.0 0.045 1.5E-06 49.8 2.8 22 184-205 3-24 (189)
197 1rj9_A FTSY, signal recognitio 93.0 0.051 1.8E-06 53.4 3.4 25 181-205 101-125 (304)
198 2b8t_A Thymidine kinase; deoxy 93.0 0.033 1.1E-06 52.2 1.9 87 182-276 12-100 (223)
199 1sky_E F1-ATPase, F1-ATP synth 93.0 0.12 4.2E-06 53.5 6.3 41 183-224 152-192 (473)
200 3k1j_A LON protease, ATP-depen 93.0 0.14 4.8E-06 55.3 7.1 44 158-205 40-83 (604)
201 1gtv_A TMK, thymidylate kinase 93.0 0.022 7.6E-07 52.3 0.6 22 183-204 1-22 (214)
202 1aky_A Adenylate kinase; ATP:A 93.0 0.056 1.9E-06 50.0 3.4 23 182-204 4-26 (220)
203 3fwy_A Light-independent proto 92.9 0.057 2E-06 53.3 3.6 24 181-204 47-70 (314)
204 1g41_A Heat shock protein HSLU 92.9 0.093 3.2E-06 54.2 5.2 47 159-205 15-73 (444)
205 1b0u_A Histidine permease; ABC 92.9 0.087 3E-06 50.5 4.8 34 182-218 32-65 (262)
206 3lnc_A Guanylate kinase, GMP k 92.9 0.035 1.2E-06 51.9 1.9 23 182-204 27-50 (231)
207 3gfo_A Cobalt import ATP-bindi 92.9 0.087 3E-06 50.9 4.8 34 182-218 34-67 (275)
208 3umf_A Adenylate kinase; rossm 92.9 0.068 2.3E-06 49.7 3.9 26 180-205 27-52 (217)
209 3fb4_A Adenylate kinase; psych 92.9 0.056 1.9E-06 49.7 3.3 21 184-204 2-22 (216)
210 2pcj_A ABC transporter, lipopr 92.8 0.082 2.8E-06 49.4 4.4 34 182-218 30-63 (224)
211 1zd8_A GTP:AMP phosphotransfer 92.8 0.05 1.7E-06 50.7 2.9 23 182-204 7-29 (227)
212 2f6r_A COA synthase, bifunctio 92.8 0.059 2E-06 52.2 3.4 24 181-204 74-97 (281)
213 3ake_A Cytidylate kinase; CMP 92.7 0.062 2.1E-06 48.9 3.3 21 184-204 4-24 (208)
214 3dl0_A Adenylate kinase; phosp 92.7 0.063 2.1E-06 49.4 3.3 21 184-204 2-22 (216)
215 2ck3_D ATP synthase subunit be 92.7 0.18 6.1E-06 52.3 6.9 64 170-235 142-207 (482)
216 1sq5_A Pantothenate kinase; P- 92.7 0.063 2.2E-06 52.7 3.5 24 181-204 79-102 (308)
217 3pxi_A Negative regulator of g 92.7 0.087 3E-06 58.5 5.0 47 159-205 491-544 (758)
218 2f1r_A Molybdopterin-guanine d 92.7 0.03 1E-06 50.1 1.0 23 183-205 3-25 (171)
219 3b9q_A Chloroplast SRP recepto 92.7 0.071 2.4E-06 52.3 3.8 24 182-205 100-123 (302)
220 3nwj_A ATSK2; P loop, shikimat 92.6 0.05 1.7E-06 51.8 2.6 23 182-204 48-70 (250)
221 2ffh_A Protein (FFH); SRP54, s 92.6 0.28 9.5E-06 50.4 8.3 24 182-205 98-121 (425)
222 2cbz_A Multidrug resistance-as 92.5 0.058 2E-06 50.9 2.9 24 182-205 31-54 (237)
223 1np6_A Molybdopterin-guanine d 92.5 0.07 2.4E-06 47.8 3.3 24 182-205 6-29 (174)
224 1ji0_A ABC transporter; ATP bi 92.5 0.11 3.6E-06 49.1 4.7 34 182-218 32-65 (240)
225 2ff7_A Alpha-hemolysin translo 92.5 0.11 3.7E-06 49.4 4.7 34 182-218 35-68 (247)
226 2olj_A Amino acid ABC transpor 92.4 0.11 3.8E-06 49.8 4.8 34 182-218 50-83 (263)
227 1zak_A Adenylate kinase; ATP:A 92.4 0.055 1.9E-06 50.2 2.6 23 182-204 5-27 (222)
228 1vpl_A ABC transporter, ATP-bi 92.4 0.11 3.9E-06 49.5 4.8 34 182-218 41-74 (256)
229 2d2e_A SUFC protein; ABC-ATPas 92.4 0.07 2.4E-06 50.8 3.2 23 182-204 29-51 (250)
230 3m6a_A ATP-dependent protease 92.4 0.093 3.2E-06 55.9 4.5 47 159-205 81-131 (543)
231 1sgw_A Putative ABC transporte 92.3 0.1 3.4E-06 48.5 4.2 23 182-204 35-57 (214)
232 3d3q_A TRNA delta(2)-isopenten 92.3 0.075 2.6E-06 52.9 3.5 23 183-205 8-30 (340)
233 2ixe_A Antigen peptide transpo 92.3 0.11 3.9E-06 49.9 4.7 34 182-218 45-78 (271)
234 1mv5_A LMRA, multidrug resista 92.3 0.071 2.4E-06 50.5 3.2 23 182-204 28-50 (243)
235 1g6h_A High-affinity branched- 92.3 0.066 2.2E-06 51.2 2.9 23 182-204 33-55 (257)
236 2zu0_C Probable ATP-dependent 92.2 0.075 2.5E-06 51.1 3.3 23 182-204 46-68 (267)
237 2pze_A Cystic fibrosis transme 92.2 0.069 2.4E-06 50.1 3.0 24 182-205 34-57 (229)
238 3l0o_A Transcription terminati 92.2 0.35 1.2E-05 48.8 8.2 54 168-223 162-216 (427)
239 4g1u_C Hemin import ATP-bindin 92.2 0.073 2.5E-06 51.2 3.1 23 182-204 37-59 (266)
240 1tue_A Replication protein E1; 92.1 0.12 4E-06 47.6 4.2 39 166-205 43-81 (212)
241 2yz2_A Putative ABC transporte 92.1 0.13 4.3E-06 49.5 4.7 34 182-218 33-66 (266)
242 1svm_A Large T antigen; AAA+ f 92.1 0.14 4.7E-06 51.9 5.2 36 169-204 156-191 (377)
243 3r20_A Cytidylate kinase; stru 92.0 0.085 2.9E-06 49.7 3.3 23 182-204 9-31 (233)
244 2xb4_A Adenylate kinase; ATP-b 91.9 0.087 3E-06 49.0 3.3 21 184-204 2-22 (223)
245 2wji_A Ferrous iron transport 91.9 0.12 4.1E-06 45.2 4.1 23 183-205 4-26 (165)
246 2ghi_A Transport protein; mult 91.9 0.076 2.6E-06 50.8 2.9 33 182-218 46-78 (260)
247 2eyu_A Twitching motility prot 91.9 0.095 3.2E-06 50.2 3.6 23 182-204 25-47 (261)
248 2og2_A Putative signal recogni 91.8 0.099 3.4E-06 52.5 3.8 24 182-205 157-180 (359)
249 1oix_A RAS-related protein RAB 91.8 0.084 2.9E-06 47.6 3.0 24 182-205 29-52 (191)
250 1vma_A Cell division protein F 91.8 0.1 3.5E-06 51.2 3.8 25 181-205 103-127 (306)
251 2qi9_C Vitamin B12 import ATP- 91.8 0.081 2.8E-06 50.3 3.0 23 182-204 26-48 (249)
252 2dyk_A GTP-binding protein; GT 91.8 0.12 3.9E-06 44.5 3.8 23 183-205 2-24 (161)
253 2ihy_A ABC transporter, ATP-bi 91.7 0.083 2.8E-06 51.2 3.0 23 182-204 47-69 (279)
254 1ltq_A Polynucleotide kinase; 91.7 0.099 3.4E-06 50.8 3.6 22 183-204 3-24 (301)
255 2w0m_A SSO2452; RECA, SSPF, un 91.7 0.092 3.1E-06 48.5 3.2 46 182-231 23-68 (235)
256 2f9l_A RAB11B, member RAS onco 91.7 0.092 3.1E-06 47.5 3.1 24 182-205 5-28 (199)
257 3be4_A Adenylate kinase; malar 91.7 0.088 3E-06 48.7 3.0 22 183-204 6-27 (217)
258 2nq2_C Hypothetical ABC transp 91.6 0.085 2.9E-06 50.3 2.9 24 182-205 31-54 (253)
259 1ak2_A Adenylate kinase isoenz 91.6 0.11 3.6E-06 48.7 3.6 24 182-205 16-39 (233)
260 2zej_A Dardarin, leucine-rich 91.6 0.083 2.8E-06 47.1 2.7 22 184-205 4-25 (184)
261 1e4v_A Adenylate kinase; trans 91.6 0.088 3E-06 48.4 2.9 21 184-204 2-22 (214)
262 3crm_A TRNA delta(2)-isopenten 91.6 0.1 3.5E-06 51.5 3.5 22 183-204 6-27 (323)
263 1r6b_X CLPA protein; AAA+, N-t 91.6 0.21 7.1E-06 55.4 6.4 47 159-205 458-511 (758)
264 2vp4_A Deoxynucleoside kinase; 91.6 0.075 2.5E-06 49.7 2.4 25 181-205 19-43 (230)
265 1q3t_A Cytidylate kinase; nucl 91.5 0.11 3.7E-06 48.7 3.5 24 181-204 15-38 (236)
266 1a7j_A Phosphoribulokinase; tr 91.5 0.064 2.2E-06 52.3 1.9 23 182-204 5-27 (290)
267 1j8m_F SRP54, signal recogniti 91.5 0.16 5.4E-06 49.6 4.7 24 182-205 98-121 (297)
268 2v9p_A Replication protein E1; 91.5 0.1 3.4E-06 51.2 3.2 24 181-204 125-148 (305)
269 3a8t_A Adenylate isopentenyltr 91.4 0.11 3.7E-06 51.6 3.5 23 182-204 40-62 (339)
270 1yrb_A ATP(GTP)binding protein 91.4 0.12 4E-06 49.0 3.6 25 181-205 13-37 (262)
271 3exa_A TRNA delta(2)-isopenten 91.3 0.12 4E-06 50.8 3.5 23 182-204 3-25 (322)
272 2ce2_X GTPase HRAS; signaling 91.3 0.13 4.3E-06 44.2 3.5 22 184-205 5-26 (166)
273 1tq4_A IIGP1, interferon-induc 91.3 0.098 3.4E-06 53.6 3.1 24 181-204 68-91 (413)
274 4eaq_A DTMP kinase, thymidylat 91.2 0.19 6.6E-06 47.0 4.8 25 181-205 25-49 (229)
275 1z2a_A RAS-related protein RAB 91.1 0.12 4.2E-06 44.6 3.2 24 182-205 5-28 (168)
276 3sop_A Neuronal-specific septi 91.1 0.1 3.5E-06 50.2 2.9 22 184-205 4-25 (270)
277 2v3c_C SRP54, signal recogniti 91.1 0.14 4.6E-06 52.9 3.9 37 168-204 78-121 (432)
278 1u8z_A RAS-related protein RAL 91.0 0.16 5.4E-06 43.8 3.9 24 183-206 5-28 (168)
279 3con_A GTPase NRAS; structural 91.0 0.15 5.3E-06 45.3 3.9 24 183-206 22-45 (190)
280 1fzq_A ADP-ribosylation factor 91.0 0.13 4.3E-06 45.8 3.3 26 180-205 14-39 (181)
281 2pjz_A Hypothetical protein ST 91.0 0.11 3.8E-06 49.8 3.0 22 183-204 31-52 (263)
282 2wjg_A FEOB, ferrous iron tran 91.0 0.14 5E-06 45.4 3.6 24 182-205 7-30 (188)
283 2lkc_A Translation initiation 90.9 0.2 6.8E-06 43.8 4.5 25 181-205 7-31 (178)
284 1z08_A RAS-related protein RAB 90.9 0.17 5.9E-06 43.8 4.0 24 182-205 6-29 (170)
285 1c1y_A RAS-related protein RAP 90.9 0.16 5.5E-06 43.8 3.8 22 184-205 5-26 (167)
286 3vr4_D V-type sodium ATPase su 90.9 0.13 4.3E-06 53.1 3.4 91 184-276 153-259 (465)
287 3hjn_A DTMP kinase, thymidylat 90.8 0.15 5.1E-06 46.5 3.6 46 184-231 2-47 (197)
288 3sr0_A Adenylate kinase; phosp 90.7 0.14 4.8E-06 47.2 3.3 21 184-204 2-22 (206)
289 2nzj_A GTP-binding protein REM 90.7 0.13 4.4E-06 44.9 3.0 24 182-205 4-27 (175)
290 2ged_A SR-beta, signal recogni 90.7 0.14 4.9E-06 45.7 3.3 25 181-205 47-71 (193)
291 1kao_A RAP2A; GTP-binding prot 90.7 0.18 6.3E-06 43.3 3.9 23 183-205 4-26 (167)
292 3foz_A TRNA delta(2)-isopenten 90.6 0.15 5.1E-06 50.0 3.5 23 182-204 10-32 (316)
293 3cf2_A TER ATPase, transitiona 90.6 0.22 7.4E-06 55.3 5.2 51 154-204 472-533 (806)
294 1ls1_A Signal recognition part 90.6 0.15 5E-06 49.8 3.5 24 182-205 98-121 (295)
295 3cmu_A Protein RECA, recombina 90.6 0.45 1.5E-05 57.7 8.2 89 181-275 1426-1515(2050)
296 2qm8_A GTPase/ATPase; G protei 90.6 0.24 8.2E-06 49.3 5.1 35 170-204 43-77 (337)
297 2erx_A GTP-binding protein DI- 90.5 0.15 5E-06 44.3 3.1 23 183-205 4-26 (172)
298 1z0j_A RAB-22, RAS-related pro 90.4 0.16 5.4E-06 44.0 3.3 24 183-206 7-30 (170)
299 3nh6_A ATP-binding cassette SU 90.4 0.091 3.1E-06 51.6 1.8 23 182-204 80-102 (306)
300 3fvq_A Fe(3+) IONS import ATP- 90.4 0.22 7.6E-06 49.9 4.7 23 182-204 30-52 (359)
301 1ek0_A Protein (GTP-binding pr 90.4 0.19 6.6E-06 43.4 3.8 23 184-206 5-27 (170)
302 4dsu_A GTPase KRAS, isoform 2B 90.4 0.19 6.6E-06 44.4 3.9 24 183-206 5-28 (189)
303 3zvl_A Bifunctional polynucleo 90.4 0.14 4.8E-06 52.5 3.3 25 181-205 257-281 (416)
304 1nlf_A Regulatory protein REPA 90.4 0.12 4.1E-06 49.7 2.7 23 182-204 30-52 (279)
305 3t1o_A Gliding protein MGLA; G 90.3 0.15 5E-06 45.5 3.1 24 182-205 14-37 (198)
306 2j37_W Signal recognition part 90.3 0.24 8.1E-06 52.1 5.0 24 181-204 100-123 (504)
307 1cr0_A DNA primase/helicase; R 90.3 0.13 4.5E-06 49.9 2.9 51 182-236 35-87 (296)
308 2ocp_A DGK, deoxyguanosine kin 90.3 0.16 5.4E-06 47.7 3.3 24 182-205 2-25 (241)
309 3end_A Light-independent proto 90.2 0.17 5.7E-06 49.4 3.6 24 181-204 40-63 (307)
310 2qtf_A Protein HFLX, GTP-bindi 90.2 0.34 1.2E-05 48.7 5.9 25 181-205 178-202 (364)
311 3kkq_A RAS-related protein M-R 90.2 0.2 6.9E-06 44.2 3.9 24 182-205 18-41 (183)
312 1ky3_A GTP-binding protein YPT 90.2 0.2 7E-06 43.8 3.9 25 181-205 7-31 (182)
313 3bh0_A DNAB-like replicative h 90.2 0.64 2.2E-05 45.6 7.8 50 182-235 68-118 (315)
314 3kta_A Chromosome segregation 90.2 0.15 5.1E-06 45.4 2.9 22 183-204 27-48 (182)
315 3tui_C Methionine import ATP-b 90.1 0.16 5.3E-06 51.1 3.3 23 182-204 54-76 (366)
316 2bbs_A Cystic fibrosis transme 90.1 0.13 4.3E-06 50.2 2.6 24 182-205 64-87 (290)
317 3q85_A GTP-binding protein REM 90.1 0.15 5.3E-06 44.2 2.9 22 183-204 3-24 (169)
318 1qvr_A CLPB protein; coiled co 90.1 0.28 9.4E-06 55.3 5.7 46 160-205 559-611 (854)
319 1u0j_A DNA replication protein 90.1 0.3 1E-05 46.7 5.1 38 168-205 90-127 (267)
320 1nij_A Hypothetical protein YJ 90.1 0.14 4.9E-06 50.4 2.9 25 181-205 3-27 (318)
321 3upu_A ATP-dependent DNA helic 90.0 0.33 1.1E-05 50.4 5.9 39 164-205 30-68 (459)
322 2fn4_A P23, RAS-related protei 90.0 0.19 6.5E-06 44.0 3.5 25 181-205 8-32 (181)
323 2p67_A LAO/AO transport system 90.0 0.29 9.8E-06 48.7 5.1 34 171-204 45-78 (341)
324 1z47_A CYSA, putative ABC-tran 90.0 0.16 5.5E-06 50.9 3.2 23 182-204 41-63 (355)
325 1wms_A RAB-9, RAB9, RAS-relate 89.9 0.18 6.3E-06 44.0 3.3 24 182-205 7-30 (177)
326 4a1f_A DNAB helicase, replicat 89.9 0.72 2.5E-05 45.8 7.9 50 182-235 46-96 (338)
327 2gj8_A MNME, tRNA modification 89.9 0.15 5.1E-06 45.0 2.7 23 183-205 5-27 (172)
328 1z0f_A RAB14, member RAS oncog 89.9 0.22 7.6E-06 43.5 3.8 26 181-206 14-39 (179)
329 3def_A T7I23.11 protein; chlor 89.9 0.32 1.1E-05 46.2 5.2 38 169-206 23-60 (262)
330 1v43_A Sugar-binding transport 89.9 0.29 1E-05 49.3 5.1 23 182-204 37-59 (372)
331 1m7b_A RND3/RHOE small GTP-bin 89.8 0.19 6.7E-06 44.5 3.4 24 182-205 7-30 (184)
332 1r8s_A ADP-ribosylation factor 89.8 0.18 6E-06 43.5 3.1 21 185-205 3-23 (164)
333 3c5c_A RAS-like protein 12; GD 89.8 0.23 7.8E-06 44.3 3.9 25 182-206 21-45 (187)
334 1g29_1 MALK, maltose transport 89.8 0.29 1E-05 49.3 5.1 24 182-205 29-52 (372)
335 1r2q_A RAS-related protein RAB 89.8 0.19 6.4E-06 43.5 3.2 23 183-205 7-29 (170)
336 3t5g_A GTP-binding protein RHE 89.8 0.2 6.9E-06 44.1 3.5 25 182-206 6-30 (181)
337 2hxs_A RAB-26, RAS-related pro 89.8 0.19 6.6E-06 43.9 3.3 24 182-205 6-29 (178)
338 3ihw_A Centg3; RAS, centaurin, 89.8 0.23 7.9E-06 44.3 3.9 24 182-205 20-43 (184)
339 1p9r_A General secretion pathw 89.7 0.36 1.2E-05 49.5 5.7 40 163-204 150-189 (418)
340 2yyz_A Sugar ABC transporter, 89.7 0.18 6E-06 50.7 3.2 23 182-204 29-51 (359)
341 2it1_A 362AA long hypothetical 89.7 0.18 6.1E-06 50.7 3.3 24 182-205 29-52 (362)
342 3rlf_A Maltose/maltodextrin im 89.6 0.18 6.1E-06 51.0 3.3 23 182-204 29-51 (381)
343 1lw7_A Transcriptional regulat 89.6 0.17 5.7E-06 50.9 3.1 23 182-204 170-192 (365)
344 3tw8_B RAS-related protein RAB 89.6 0.16 5.5E-06 44.5 2.6 25 181-205 8-32 (181)
345 2a9k_A RAS-related protein RAL 89.6 0.24 8.1E-06 43.6 3.8 25 182-206 18-42 (187)
346 1h65_A Chloroplast outer envel 89.6 0.34 1.2E-05 46.3 5.2 38 169-206 26-63 (270)
347 1upt_A ARL1, ADP-ribosylation 89.6 0.2 6.8E-06 43.5 3.2 24 182-205 7-30 (171)
348 1mh1_A RAC1; GTP-binding, GTPa 89.5 0.24 8.4E-06 43.5 3.8 23 183-205 6-28 (186)
349 1g16_A RAS-related protein SEC 89.5 0.18 6.1E-06 43.6 2.9 23 183-205 4-26 (170)
350 1nrj_B SR-beta, signal recogni 89.5 0.23 7.8E-06 45.4 3.7 26 181-206 11-36 (218)
351 3tkl_A RAS-related protein RAB 89.4 0.27 9.3E-06 43.8 4.1 26 181-206 15-40 (196)
352 3q72_A GTP-binding protein RAD 89.4 0.16 5.5E-06 43.9 2.5 21 184-204 4-24 (166)
353 3d31_A Sulfate/molybdate ABC t 89.4 0.24 8.1E-06 49.5 4.0 23 182-204 26-48 (348)
354 2bov_A RAla, RAS-related prote 89.4 0.25 8.4E-06 44.5 3.8 25 182-206 14-38 (206)
355 3bc1_A RAS-related protein RAB 89.3 0.28 9.4E-06 43.4 4.0 24 182-205 11-34 (195)
356 2www_A Methylmalonic aciduria 89.3 0.24 8.1E-06 49.6 3.9 24 181-204 73-96 (349)
357 1zj6_A ADP-ribosylation factor 89.2 0.41 1.4E-05 42.4 5.1 35 168-205 5-39 (187)
358 2oil_A CATX-8, RAS-related pro 89.2 0.22 7.4E-06 44.5 3.3 24 182-205 25-48 (193)
359 2efe_B Small GTP-binding prote 89.2 0.26 8.9E-06 43.2 3.8 24 182-205 12-35 (181)
360 4edh_A DTMP kinase, thymidylat 89.2 0.47 1.6E-05 43.8 5.6 24 182-205 6-29 (213)
361 1p5z_B DCK, deoxycytidine kina 89.2 0.14 4.8E-06 48.8 2.0 24 181-204 23-46 (263)
362 1fx0_A ATP synthase alpha chai 89.2 0.32 1.1E-05 50.8 4.8 87 182-275 163-265 (507)
363 1cp2_A CP2, nitrogenase iron p 89.2 0.2 6.8E-06 47.6 3.1 22 183-204 2-23 (269)
364 3bwd_D RAC-like GTP-binding pr 89.1 0.22 7.6E-06 43.7 3.2 23 183-205 9-31 (182)
365 1g8f_A Sulfate adenylyltransfe 89.1 0.32 1.1E-05 51.1 4.9 46 160-205 373-418 (511)
366 2atv_A RERG, RAS-like estrogen 89.1 0.28 9.6E-06 44.0 3.9 24 182-205 28-51 (196)
367 2h92_A Cytidylate kinase; ross 89.1 0.19 6.4E-06 46.2 2.8 22 183-204 4-25 (219)
368 1vg8_A RAS-related protein RAB 89.0 0.23 7.8E-06 44.8 3.3 26 181-206 7-32 (207)
369 2qe7_A ATP synthase subunit al 89.0 0.5 1.7E-05 49.2 6.1 91 182-276 162-265 (502)
370 1svi_A GTP-binding protein YSX 89.0 0.2 6.9E-06 44.7 2.9 25 181-205 22-46 (195)
371 2bme_A RAB4A, RAS-related prot 89.0 0.25 8.5E-06 43.6 3.4 25 182-206 10-34 (186)
372 1m2o_B GTP-binding protein SAR 89.0 0.2 6.9E-06 44.9 2.9 23 183-205 24-46 (190)
373 1q57_A DNA primase/helicase; d 88.9 1.6 5.6E-05 45.6 10.3 52 181-235 241-293 (503)
374 2qmh_A HPR kinase/phosphorylas 88.9 0.25 8.5E-06 45.2 3.4 23 182-204 34-56 (205)
375 3eph_A TRNA isopentenyltransfe 88.9 0.21 7.1E-06 50.8 3.1 23 182-204 2-24 (409)
376 4hlc_A DTMP kinase, thymidylat 88.9 0.41 1.4E-05 43.9 5.0 30 183-214 3-32 (205)
377 3pqc_A Probable GTP-binding pr 88.9 0.22 7.6E-06 44.2 3.1 25 182-206 23-47 (195)
378 2iwr_A Centaurin gamma 1; ANK 88.9 0.18 6E-06 44.3 2.4 23 183-205 8-30 (178)
379 2ewv_A Twitching motility prot 88.9 0.23 7.8E-06 50.1 3.5 23 182-204 136-158 (372)
380 2g6b_A RAS-related protein RAB 88.8 0.24 8.2E-06 43.4 3.2 25 182-206 10-34 (180)
381 2y8e_A RAB-protein 6, GH09086P 88.8 0.26 8.9E-06 43.0 3.4 23 183-205 15-37 (179)
382 2dr3_A UPF0273 protein PH0284; 88.7 0.21 7E-06 46.6 2.8 46 182-231 23-68 (247)
383 2afh_E Nitrogenase iron protei 88.7 0.23 7.9E-06 47.9 3.3 23 182-204 2-24 (289)
384 2fh5_B SR-beta, signal recogni 88.7 0.27 9.2E-06 44.7 3.6 25 182-206 7-31 (214)
385 1ypw_A Transitional endoplasmi 88.7 0.2 6.8E-06 56.0 3.1 52 154-205 472-534 (806)
386 2cxx_A Probable GTP-binding pr 88.7 0.18 6.3E-06 44.6 2.4 22 184-205 3-24 (190)
387 2r9v_A ATP synthase subunit al 88.7 0.46 1.6E-05 49.6 5.6 91 182-276 175-278 (515)
388 3reg_A RHO-like small GTPase; 88.6 0.3 1E-05 43.6 3.8 25 182-206 23-47 (194)
389 3llu_A RAS-related GTP-binding 88.6 0.2 6.9E-06 45.0 2.6 24 182-205 20-43 (196)
390 3cbq_A GTP-binding protein REM 88.6 0.19 6.4E-06 45.4 2.3 23 182-204 23-45 (195)
391 1zd9_A ADP-ribosylation factor 88.6 0.33 1.1E-05 43.2 4.0 24 182-205 22-45 (188)
392 2obl_A ESCN; ATPase, hydrolase 88.5 0.22 7.4E-06 49.8 3.0 24 182-205 71-94 (347)
393 3clv_A RAB5 protein, putative; 88.5 0.24 8.4E-06 44.1 3.1 25 182-206 7-31 (208)
394 1zbd_A Rabphilin-3A; G protein 88.5 0.26 8.7E-06 44.4 3.2 25 182-206 8-32 (203)
395 1pui_A ENGB, probable GTP-bind 88.5 0.13 4.4E-06 46.7 1.2 24 182-205 26-49 (210)
396 2gf9_A RAS-related protein RAB 88.4 0.26 9E-06 43.8 3.2 25 182-206 22-46 (189)
397 2fg5_A RAB-22B, RAS-related pr 88.4 0.24 8.1E-06 44.4 2.9 25 182-206 23-47 (192)
398 3oes_A GTPase rhebl1; small GT 88.4 0.29 9.8E-06 44.2 3.5 25 182-206 24-48 (201)
399 2a5j_A RAS-related protein RAB 88.3 0.27 9.2E-06 43.9 3.3 24 182-205 21-44 (191)
400 2qnr_A Septin-2, protein NEDD5 88.3 0.18 6.1E-06 49.3 2.2 20 185-204 21-40 (301)
401 1ega_A Protein (GTP-binding pr 88.3 0.27 9.3E-06 48.0 3.4 24 182-205 8-31 (301)
402 3jvv_A Twitching mobility prot 88.2 0.27 9.3E-06 49.3 3.5 23 182-204 123-145 (356)
403 1ksh_A ARF-like protein 2; sma 88.2 0.25 8.4E-06 43.8 2.9 26 181-206 17-42 (186)
404 2cjw_A GTP-binding protein GEM 88.2 0.26 8.9E-06 44.3 3.1 23 182-204 6-28 (192)
405 2p5s_A RAS and EF-hand domain 88.2 0.28 9.5E-06 44.2 3.3 24 182-205 28-51 (199)
406 3gd7_A Fusion complex of cysti 88.2 0.23 7.8E-06 50.5 2.9 23 182-204 47-69 (390)
407 1z06_A RAS-related protein RAB 88.1 0.29 9.8E-06 43.6 3.3 24 182-205 20-43 (189)
408 1gwn_A RHO-related GTP-binding 88.1 0.3 1E-05 44.5 3.4 24 182-205 28-51 (205)
409 1x3s_A RAS-related protein RAB 88.1 0.28 9.6E-06 43.6 3.2 25 182-206 15-39 (195)
410 3gmt_A Adenylate kinase; ssgci 88.1 0.27 9.1E-06 46.1 3.1 23 182-204 8-30 (230)
411 1oxx_K GLCV, glucose, ABC tran 88.1 0.15 5.1E-06 51.2 1.4 23 182-204 31-53 (353)
412 2gza_A Type IV secretion syste 88.1 0.19 6.4E-06 50.5 2.2 23 182-204 175-197 (361)
413 1f6b_A SAR1; gtpases, N-termin 88.0 0.17 5.7E-06 45.8 1.6 23 183-205 26-48 (198)
414 4gzl_A RAS-related C3 botulinu 87.9 0.36 1.2E-05 43.7 3.8 25 182-206 30-54 (204)
415 2q3h_A RAS homolog gene family 87.8 0.27 9.2E-06 44.2 2.9 24 182-205 20-43 (201)
416 2gf0_A GTP-binding protein DI- 87.8 0.25 8.7E-06 44.1 2.7 24 182-205 8-31 (199)
417 2qag_B Septin-6, protein NEDD5 87.8 0.25 8.6E-06 50.7 2.9 21 185-205 45-65 (427)
418 3dz8_A RAS-related protein RAB 87.7 0.26 8.8E-06 44.0 2.7 24 182-205 23-46 (191)
419 2ew1_A RAS-related protein RAB 87.7 0.26 8.8E-06 44.8 2.7 24 182-205 26-49 (201)
420 3lxx_A GTPase IMAP family memb 87.6 0.35 1.2E-05 45.1 3.7 26 181-206 28-53 (239)
421 4bas_A ADP-ribosylation factor 87.6 0.32 1.1E-05 43.4 3.2 26 181-206 16-41 (199)
422 2qu8_A Putative nucleolar GTP- 87.5 0.35 1.2E-05 44.6 3.6 25 181-205 28-52 (228)
423 3cph_A RAS-related protein SEC 87.4 0.42 1.4E-05 43.2 4.0 24 182-205 20-43 (213)
424 2bcg_Y Protein YP2, GTP-bindin 87.3 0.36 1.2E-05 43.6 3.4 25 182-206 8-32 (206)
425 2yv5_A YJEQ protein; hydrolase 87.3 0.31 1.1E-05 47.6 3.2 33 168-206 156-188 (302)
426 2rcn_A Probable GTPase ENGC; Y 87.3 0.32 1.1E-05 48.7 3.3 23 183-205 216-238 (358)
427 1u0l_A Probable GTPase ENGC; p 87.3 0.42 1.4E-05 46.6 4.1 33 168-205 160-192 (301)
428 3q3j_B RHO-related GTP-binding 87.3 0.4 1.4E-05 43.8 3.8 25 182-206 27-51 (214)
429 2atx_A Small GTP binding prote 87.3 0.37 1.3E-05 43.0 3.5 24 182-205 18-41 (194)
430 2fv8_A H6, RHO-related GTP-bin 87.3 0.3 1E-05 44.3 2.9 24 182-205 25-48 (207)
431 2o52_A RAS-related protein RAB 87.2 0.27 9.3E-06 44.4 2.6 24 182-205 25-48 (200)
432 2npi_A Protein CLP1; CLP1-PCF1 87.2 0.23 8E-06 51.6 2.3 24 182-205 138-161 (460)
433 3iev_A GTP-binding protein ERA 87.2 0.37 1.3E-05 47.1 3.7 26 180-205 8-33 (308)
434 2il1_A RAB12; G-protein, GDP, 87.1 0.26 9E-06 44.1 2.4 24 182-205 26-49 (192)
435 2pt7_A CAG-ALFA; ATPase, prote 87.1 0.21 7.1E-06 49.6 1.8 23 183-205 172-194 (330)
436 2axn_A 6-phosphofructo-2-kinas 87.1 0.37 1.3E-05 50.9 3.9 23 182-204 35-57 (520)
437 2b6h_A ADP-ribosylation factor 87.0 0.26 8.8E-06 44.2 2.2 24 182-205 29-52 (192)
438 2r8r_A Sensor protein; KDPD, P 87.0 0.34 1.2E-05 45.2 3.1 22 184-205 8-29 (228)
439 2j1l_A RHO-related GTP-binding 87.0 0.29 9.9E-06 44.8 2.6 24 182-205 34-57 (214)
440 4dzz_A Plasmid partitioning pr 86.9 0.37 1.3E-05 43.5 3.3 22 183-204 2-24 (206)
441 2j0v_A RAC-like GTP-binding pr 86.9 0.39 1.3E-05 43.6 3.4 24 182-205 9-32 (212)
442 3k53_A Ferrous iron transport 86.9 0.35 1.2E-05 46.2 3.3 24 182-205 3-26 (271)
443 2gco_A H9, RHO-related GTP-bin 86.9 0.39 1.3E-05 43.3 3.4 24 182-205 25-48 (201)
444 3f9v_A Minichromosome maintena 86.9 0.18 6.2E-06 54.3 1.3 22 184-205 329-350 (595)
445 3fdi_A Uncharacterized protein 86.9 0.32 1.1E-05 44.4 2.9 23 182-204 6-28 (201)
446 2c61_A A-type ATP synthase non 86.8 0.5 1.7E-05 48.9 4.5 93 183-275 153-259 (469)
447 2hup_A RAS-related protein RAB 86.8 0.33 1.1E-05 43.8 2.9 25 181-205 28-52 (201)
448 3cr8_A Sulfate adenylyltranfer 86.8 0.23 7.8E-06 52.9 2.0 24 182-205 369-392 (552)
449 1yqt_A RNAse L inhibitor; ATP- 86.7 0.34 1.2E-05 51.5 3.3 24 182-205 312-335 (538)
450 3lv8_A DTMP kinase, thymidylat 86.7 0.59 2E-05 43.9 4.6 39 182-221 27-65 (236)
451 2dpy_A FLII, flagellum-specifi 86.7 0.32 1.1E-05 50.2 3.0 24 182-205 157-180 (438)
452 2fu5_C RAS-related protein RAB 86.7 0.22 7.5E-06 43.9 1.6 24 182-205 8-31 (183)
453 2h17_A ADP-ribosylation factor 86.6 0.29 1E-05 43.2 2.4 24 182-205 21-44 (181)
454 1moz_A ARL1, ADP-ribosylation 86.6 0.33 1.1E-05 42.6 2.8 25 181-205 17-41 (183)
455 3ozx_A RNAse L inhibitor; ATP 86.6 0.32 1.1E-05 51.7 3.0 23 183-205 295-317 (538)
456 2f7s_A C25KG, RAS-related prot 86.5 0.38 1.3E-05 43.8 3.2 24 182-205 25-48 (217)
457 3ld9_A DTMP kinase, thymidylat 86.5 0.43 1.5E-05 44.4 3.5 25 181-205 20-44 (223)
458 2g3y_A GTP-binding protein GEM 86.4 0.37 1.3E-05 44.3 3.1 23 182-204 37-59 (211)
459 1mky_A Probable GTP-binding pr 86.3 0.71 2.4E-05 47.5 5.4 45 162-206 151-204 (439)
460 3euj_A Chromosome partition pr 86.3 0.38 1.3E-05 50.2 3.3 22 183-204 30-51 (483)
461 3ch4_B Pmkase, phosphomevalona 86.3 0.41 1.4E-05 43.8 3.2 24 181-204 10-33 (202)
462 1f2t_A RAD50 ABC-ATPase; DNA d 86.2 0.48 1.7E-05 40.9 3.5 23 182-204 23-45 (149)
463 3gqb_B V-type ATP synthase bet 86.2 0.31 1.1E-05 50.2 2.6 94 183-276 148-262 (464)
464 1jwy_B Dynamin A GTPase domain 86.2 0.3 1E-05 47.5 2.4 26 180-205 22-47 (315)
465 1yqt_A RNAse L inhibitor; ATP- 86.1 0.38 1.3E-05 51.1 3.3 24 182-205 47-70 (538)
466 2qag_C Septin-7; cell cycle, c 86.1 0.34 1.2E-05 49.7 2.8 22 185-206 34-55 (418)
467 4dkx_A RAS-related protein RAB 86.0 0.43 1.5E-05 44.1 3.2 22 184-205 15-36 (216)
468 2x77_A ADP-ribosylation factor 85.9 0.44 1.5E-05 42.2 3.2 25 181-205 21-45 (189)
469 3cmw_A Protein RECA, recombina 85.9 0.96 3.3E-05 54.1 6.8 86 183-274 384-470 (1706)
470 2h57_A ADP-ribosylation factor 85.9 0.27 9.2E-06 43.8 1.7 25 182-206 21-45 (190)
471 3v9p_A DTMP kinase, thymidylat 85.8 0.35 1.2E-05 45.2 2.5 24 182-205 25-48 (227)
472 1bif_A 6-phosphofructo-2-kinas 85.8 0.44 1.5E-05 49.6 3.6 24 182-205 39-62 (469)
473 2ck3_A ATP synthase subunit al 85.8 0.46 1.6E-05 49.6 3.6 105 171-276 152-273 (510)
474 4tmk_A Protein (thymidylate ki 85.8 0.65 2.2E-05 42.9 4.3 48 183-231 4-51 (213)
475 3bk7_A ABC transporter ATP-bin 85.7 0.41 1.4E-05 51.6 3.3 24 182-205 382-405 (607)
476 3ozx_A RNAse L inhibitor; ATP 85.6 0.4 1.4E-05 50.8 3.2 25 181-205 24-48 (538)
477 3j16_B RLI1P; ribosome recycli 85.5 0.42 1.4E-05 51.4 3.3 23 183-205 379-401 (608)
478 2xtp_A GTPase IMAP family memb 85.5 0.38 1.3E-05 45.5 2.7 26 181-206 21-46 (260)
479 3cpj_B GTP-binding protein YPT 85.5 0.48 1.6E-05 43.5 3.3 24 182-205 13-36 (223)
480 1wf3_A GTP-binding protein; GT 85.3 0.5 1.7E-05 46.1 3.5 24 182-205 7-30 (301)
481 3b1v_A Ferrous iron uptake tra 85.2 0.71 2.4E-05 44.3 4.4 24 182-205 3-26 (272)
482 2orw_A Thymidine kinase; TMTK, 85.1 0.45 1.6E-05 42.7 2.8 22 183-204 4-25 (184)
483 3cmu_A Protein RECA, recombina 85.1 1.7 6E-05 52.7 8.5 102 169-276 369-472 (2050)
484 3oaa_A ATP synthase subunit al 85.0 1.3 4.6E-05 46.0 6.6 91 182-276 162-265 (513)
485 3lxw_A GTPase IMAP family memb 85.0 0.47 1.6E-05 44.7 3.1 25 182-206 21-45 (247)
486 3j16_B RLI1P; ribosome recycli 85.0 0.46 1.6E-05 51.1 3.3 24 182-205 103-126 (608)
487 2gks_A Bifunctional SAT/APS ki 84.9 0.74 2.5E-05 48.9 4.8 24 181-204 371-394 (546)
488 1m8p_A Sulfate adenylyltransfe 84.7 0.56 1.9E-05 50.2 3.8 24 181-204 395-418 (573)
489 4b3f_X DNA-binding protein smu 84.6 0.83 2.8E-05 49.5 5.2 60 167-234 194-255 (646)
490 1x6v_B Bifunctional 3'-phospho 84.5 0.53 1.8E-05 50.7 3.5 24 181-204 51-74 (630)
491 2qag_A Septin-2, protein NEDD5 84.4 0.43 1.5E-05 47.8 2.6 22 184-205 39-60 (361)
492 3b5x_A Lipid A export ATP-bind 84.3 0.49 1.7E-05 50.7 3.2 23 182-204 369-391 (582)
493 3bk7_A ABC transporter ATP-bin 84.2 0.47 1.6E-05 51.1 3.0 24 182-205 117-140 (607)
494 3fkq_A NTRC-like two-domain pr 84.1 0.69 2.4E-05 46.5 4.0 25 180-204 141-166 (373)
495 3t5d_A Septin-7; GTP-binding p 84.0 0.41 1.4E-05 45.8 2.2 23 183-205 9-31 (274)
496 3cwq_A Para family chromosome 84.0 0.6 2E-05 42.7 3.2 36 184-222 2-38 (209)
497 3ez2_A Plasmid partition prote 83.9 1 3.6E-05 45.5 5.3 26 179-204 105-131 (398)
498 1dek_A Deoxynucleoside monopho 83.8 0.64 2.2E-05 43.8 3.4 22 183-204 2-23 (241)
499 3b60_A Lipid A export ATP-bind 83.8 0.46 1.6E-05 50.9 2.7 23 182-204 369-391 (582)
500 3iby_A Ferrous iron transport 83.7 0.54 1.8E-05 44.7 2.8 23 183-205 2-24 (256)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.4e-45 Score=393.66 Aligned_cols=257 Identities=16% Similarity=0.172 Sum_probs=214.2
Q ss_pred ccchhHHHHHHHHHhcC-CCcceEEEeeCCCCCCHHHHHHHHHh--ccCccCCCcEEEEEEcCCCC--CHHHHHH-HHHH
Q 038733 162 VGLDDRMEELLDLLIEG-PTQLSVVAIPDSIGLDKTIFTAEAYN--SSYVKHYFDYLAWIPSPYHY--DADQILD-IVTV 235 (519)
Q Consensus 162 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~--~~~v~~~F~~~~wv~vs~~~--~~~~l~~-il~~ 235 (519)
|||+.++++|.++|... +...++|+|+||||+||||||+.+|+ |.+++.+|+.++||++++.+ +...++. |+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999765 44689999999999999999999998 78999999999999999985 8999999 9999
Q ss_pred hcCCCC--CCcCCCCCCHHHHHHHHHHHhcCC-cEEEEecccccCCC--C---CCceEEE----cCC-------------
Q 038733 236 ILLPFS--MLSKIKDKDYEMKKIILGEYLMTK-RYLIVLDDVWSTDL--K---DGENIRL----DLV------------- 290 (519)
Q Consensus 236 l~~~~~--~~~~~~~~~~~~l~~~l~~~L~~k-r~LlVLDDv~~~~~--w---~gs~iiv----~~V------------- 290 (519)
++.... ...+....+.+.+...+++.|+++ |+||||||||+.++ | +||+||| ..|
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l 290 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEV 290 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEEC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEEC
Confidence 987532 222334456788899999999996 99999999999874 6 8999999 112
Q ss_pred -------------------C--C-----chhHHhhcCCchhHHHHhcccchH---HHH---HHHhcC----C-chhhHHH
Q 038733 291 -------------------P--T-----GGPLRATYQGWPFLILYHGSISFE---ENI---VEAIET----P-LGLLTVI 333 (519)
Q Consensus 291 -------------------p--~-----~~~i~~~c~GlPLai~~~g~~L~~---~~~---~~~L~~----~-~~~l~~s 333 (519)
| . +.+|+++|+|+||||+++|+.|+. +.+ ...+.+ . .++|.+|
T Consensus 291 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~S 370 (549)
T 2a5y_B 291 TSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYS 370 (549)
T ss_dssp CCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSS
T ss_pred CCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcc
Confidence 2 1 788999999999999999999887 111 111221 2 8899999
Q ss_pred hcCCChhHHHHHh-----------hhccCCCCCccChhHHHHHHHHc--CCCCch-----hHHHHHHHHHHHHHccCccc
Q 038733 334 CCKLPFHLKLCFL-----------YLSVFPAHLEISTRQLYQLWIAE--GFIPDN-----SVAIAGKYLEQLINRGFVDT 395 (519)
Q Consensus 334 y~~L~~~lk~cfl-----------y~s~FP~~~~i~~~~Lv~~W~ae--g~i~~~-----~e~~~~~~~~~Lv~rsll~~ 395 (519)
|++||+++|.||+ |||+||+++.|+ +++|+|+ ||+... .+++++ ||++|+++|||++
T Consensus 371 y~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~ 445 (549)
T 2a5y_B 371 YKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLS 445 (549)
T ss_dssp SSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSE
T ss_pred cccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeE
Confidence 9999999999999 999999999999 8999999 999753 577777 9999999999998
Q ss_pred cccCCCCceeEEEEChhHHHHHHHHhcccCc
Q 038733 396 RKRRAGGTINTCSVRGRCRPVLLTVAFKAEF 426 (519)
Q Consensus 396 ~~~~~~g~~~~~~mHdlv~d~a~~~~~~e~~ 426 (519)
...+ ...+|+|||+||+||++++.++++
T Consensus 446 ~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 446 GKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp EECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred ecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 7643 346799999999999999988765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.7e-37 Score=364.03 Aligned_cols=260 Identities=17% Similarity=0.201 Sum_probs=215.0
Q ss_pred CCCCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCc-cCCC-cEEEEEEcCCCCC--HHHH
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYV-KHYF-DYLAWIPSPYHYD--ADQI 229 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v-~~~F-~~~~wv~vs~~~~--~~~l 229 (519)
.+.....+|||+.++++|.++|...+...++|+|+||||+||||||+++|++.++ ..+| +.++||++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 4455667999999999999999876667999999999999999999999997543 5555 5677999998654 3344
Q ss_pred HH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCC--cEEEEecccccCCCC----CCceEEE----cCC--------
Q 038733 230 LD-IVTVILLPFSMLSKIKDKDYEMKKIILGEYLMTK--RYLIVLDDVWSTDLK----DGENIRL----DLV-------- 290 (519)
Q Consensus 230 ~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LlVLDDv~~~~~w----~gs~iiv----~~V-------- 290 (519)
+. ++..+....... .....+.+.+...++..+.++ |+||||||||+..+| +||+||+ ..|
T Consensus 199 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~ 277 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFS-QRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPK 277 (1249)
T ss_dssp HHHHHHHHTTTCTTC-SSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCB
T ss_pred HHHHHHHhhhhcccc-cCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCc
Confidence 66 777776643211 223457889999999999887 999999999998777 8999999 222
Q ss_pred -----------------------------CC-chhHHhhcCCchhHHHHhcccchH-----HHHHHHhcC----------
Q 038733 291 -----------------------------PT-GGPLRATYQGWPFLILYHGSISFE-----ENIVEAIET---------- 325 (519)
Q Consensus 291 -----------------------------p~-~~~i~~~c~GlPLai~~~g~~L~~-----~~~~~~L~~---------- 325 (519)
++ +.+|+++|+|+||||+++|++|+. ++.++.|.+
T Consensus 278 ~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 357 (1249)
T 3sfz_A 278 HVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSS 357 (1249)
T ss_dssp CCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTT
T ss_pred eEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhccccc
Confidence 11 788999999999999999999997 455555431
Q ss_pred --C----chhhHHHhcCCChhHHHHHhhhccCCCCCccChhHHHHHHHHcCCCCchhHHHHHHHHHHHHHccCccccccC
Q 038733 326 --P----LGLLTVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSVAIAGKYLEQLINRGFVDTRKRR 399 (519)
Q Consensus 326 --~----~~~l~~sy~~L~~~lk~cfly~s~FP~~~~i~~~~Lv~~W~aeg~i~~~~e~~~~~~~~~Lv~rsll~~~~~~ 399 (519)
. ..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++...
T Consensus 358 ~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~-- 428 (1249)
T 3sfz_A 358 SYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR-- 428 (1249)
T ss_dssp CTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE--
T ss_pred ccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec--
Confidence 0 6789999999999999999999999999999999999999876 678999999999999999654
Q ss_pred CCCceeEEEEChhHHHHHHHHhccc
Q 038733 400 AGGTINTCSVRGRCRPVLLTVAFKA 424 (519)
Q Consensus 400 ~~g~~~~~~mHdlv~d~a~~~~~~e 424 (519)
+|+..+|+|||+||+||+..+.++
T Consensus 429 -~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 429 -NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -CCCceEEEecHHHHHHHHhhhhHH
Confidence 345568999999999999998776
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8.2e-35 Score=323.21 Aligned_cols=247 Identities=17% Similarity=0.099 Sum_probs=196.6
Q ss_pred ccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcE-EEEEEcCCCCCHHHHHH-HHHHhc
Q 038733 160 NMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDY-LAWIPSPYHYDADQILD-IVTVIL 237 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~-~~wv~vs~~~~~~~l~~-il~~l~ 237 (519)
-.|||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++. |+..+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 34999999999999998643 3899999999999999999999998888999987 89999999999988888 877654
Q ss_pred CCC---CCCcCC---CCCCHHHHHHHHHHHh---cCCcEEEEecccccCCCC----CCceEEE--cC--C----------
Q 038733 238 LPF---SMLSKI---KDKDYEMKKIILGEYL---MTKRYLIVLDDVWSTDLK----DGENIRL--DL--V---------- 290 (519)
Q Consensus 238 ~~~---~~~~~~---~~~~~~~l~~~l~~~L---~~kr~LlVLDDv~~~~~w----~gs~iiv--~~--V---------- 290 (519)
... ....+. ...+.+.+...+++.| .+||+||||||||+.+.| +||+||| ++ +
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy 287 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSC
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEE
Confidence 311 000000 0113455667777766 689999999999998888 8999999 11 1
Q ss_pred --C------C-----c-------------hhHHhhcCCchhHHHHhcccchH----HHHHHHhcC-C-chhhHHHhcCCC
Q 038733 291 --P------T-----G-------------GPLRATYQGWPFLILYHGSISFE----ENIVEAIET-P-LGLLTVICCKLP 338 (519)
Q Consensus 291 --p------~-----~-------------~~i~~~c~GlPLai~~~g~~L~~----~~~~~~L~~-~-~~~l~~sy~~L~ 338 (519)
+ . + ....+.|+|+||||+++|+.|+. .+.+..... . ..+|.+||+.||
T Consensus 288 ~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp 367 (1221)
T 1vt4_I 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367 (1221)
T ss_dssp EEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSC
T ss_pred EecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCC
Confidence 1 1 1 11234599999999999999987 233333322 3 899999999999
Q ss_pred hhH-HHHHhhhccCCCCCccChhHHHHHHHHcCCCCchhHHHHHHHHHHHHHccCccccccCCCCceeEEEEChhHHHHH
Q 038733 339 FHL-KLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSVAIAGKYLEQLINRGFVDTRKRRAGGTINTCSVRGRCRPVL 417 (519)
Q Consensus 339 ~~l-k~cfly~s~FP~~~~i~~~~Lv~~W~aeg~i~~~~e~~~~~~~~~Lv~rsll~~~~~~~~g~~~~~~mHdlv~d~a 417 (519)
+++ |.||+|||+||+++.|+++.++.+|+++| ++.++.+|++|+++|||+... ...+|+|||++++++
T Consensus 368 ~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp TTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 999 99999999999999999999999999987 245899999999999999842 225799999999966
Q ss_pred H
Q 038733 418 L 418 (519)
Q Consensus 418 ~ 418 (519)
.
T Consensus 437 ~ 437 (1221)
T 1vt4_I 437 V 437 (1221)
T ss_dssp H
T ss_pred c
Confidence 3
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=300.06 Aligned_cols=254 Identities=19% Similarity=0.243 Sum_probs=202.5
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCc-cCCC-cEEEEEEcCCCCCHHHHHH-H
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYV-KHYF-DYLAWIPSPYHYDADQILD-I 232 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v-~~~F-~~~~wv~vs~~~~~~~l~~-i 232 (519)
...+.+|||+.++++|.++|.......++|+|+||||+||||||+.++++.++ +.+| +.++|++++.. +...++. +
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 34567999999999999999865556899999999999999999999997655 7789 57999999765 4444444 4
Q ss_pred ---HHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcC--CcEEEEecccccCCCC----CCceEEE----cCC---------
Q 038733 233 ---VTVILLPFSMLSKIKDKDYEMKKIILGEYLMT--KRYLIVLDDVWSTDLK----DGENIRL----DLV--------- 290 (519)
Q Consensus 233 ---l~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LlVLDDv~~~~~w----~gs~iiv----~~V--------- 290 (519)
+..++.... +......+.+.+...++..+.+ +++||||||||+...+ .|++||+ ..+
T Consensus 200 ~~l~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~ 278 (591)
T 1z6t_A 200 QNLCTRLDQDES-FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKY 278 (591)
T ss_dssp HHHHHHHCSSCC-SCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEE
T ss_pred HHHHHHhccccc-cccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCce
Confidence 334442111 1112345677888889988877 7999999999987654 8899998 111
Q ss_pred ----------------------------CC-chhHHhhcCCchhHHHHhcccchH-----HHHHHHhcC----------C
Q 038733 291 ----------------------------PT-GGPLRATYQGWPFLILYHGSISFE-----ENIVEAIET----------P 326 (519)
Q Consensus 291 ----------------------------p~-~~~i~~~c~GlPLai~~~g~~L~~-----~~~~~~L~~----------~ 326 (519)
|+ +.+|+++|+|+||||..+|+.|+. +..++.|.+ +
T Consensus 279 ~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~ 358 (591)
T 1z6t_A 279 VVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSS 358 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCS
T ss_pred EeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccc
Confidence 11 778999999999999999999987 344554431 0
Q ss_pred ------chhhHHHhcCCChhHHHHHhhhccCCCCCccChhHHHHHHHHcCCCCchhHHHHHHHHHHHHHccCccccccCC
Q 038733 327 ------LGLLTVICCKLPFHLKLCFLYLSVFPAHLEISTRQLYQLWIAEGFIPDNSVAIAGKYLEQLINRGFVDTRKRRA 400 (519)
Q Consensus 327 ------~~~l~~sy~~L~~~lk~cfly~s~FP~~~~i~~~~Lv~~W~aeg~i~~~~e~~~~~~~~~Lv~rsll~~~~~~~ 400 (519)
..++..||+.||++.|.||++||+||+|+.|+.+.+..+|.++ .+.+..++++|+++|||+...
T Consensus 359 ~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~--- 428 (591)
T 1z6t_A 359 YDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR--- 428 (591)
T ss_dssp SCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE---
T ss_pred cchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec---
Confidence 5789999999999999999999999999999999999999764 456899999999999998644
Q ss_pred CCceeEEEEChhHHHHHHHHh
Q 038733 401 GGTINTCSVRGRCRPVLLTVA 421 (519)
Q Consensus 401 ~g~~~~~~mHdlv~d~a~~~~ 421 (519)
+|...+|+||+++|++++...
T Consensus 429 ~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 429 NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ETTEEEEECCHHHHHHHHHHT
T ss_pred CCCccEEEEcHHHHHHHHhhh
Confidence 334468999999999999884
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.69 E-value=4.2e-17 Score=138.45 Aligned_cols=83 Identities=27% Similarity=0.342 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHcHhhhHHhhhhcCCCC--CCCChhHHHHHHHHHHH
Q 038733 3 ISFRLFSERLGRVLAGEEVTLPDAAKLPIQNLHAEVEIVTSWLSEFEDDMSWLLLQKIGGG--EIDDPDLGNIMDEINCF 80 (519)
Q Consensus 3 a~v~~~~~kl~~~l~~~e~~~~~~~~~~~~~L~~eL~~i~~~l~~a~~~~~~~~~~~~e~~--~~~~~~~~~Wl~~lr~~ 80 (519)
|+++.+++||.+++. +|+.++.|+++++++|+++|++|++||.+| +.+ +..++.++.|+++||++
T Consensus 1 a~v~~ll~KL~~ll~-~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da------------~~~~~~~~d~~vk~W~~~vrdl 67 (115)
T 3qfl_A 1 AAISNLIPKLGELLT-EEFKLHKGVKKNIEDLGKELESMNAALIKI------------GEVPREQLDSQDKLWADEVREL 67 (115)
T ss_dssp CTTCSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------TTSCGGGCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHH------------HHhccccCCHHHHHHHHHHHHH
Confidence 678899999999999 999999999999999999999999999999 777 56899999999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 038733 81 TYESEMVIDTFINSINEH 98 (519)
Q Consensus 81 aydaeD~lDe~~~~~~~~ 98 (519)
+||+|||||+|.++..+.
T Consensus 68 aYD~ED~iD~f~~~~~~~ 85 (115)
T 3qfl_A 68 SYVIEDVVDKFLVQVDGI 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999988643
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.27 E-value=2.5e-11 Score=125.69 Aligned_cols=236 Identities=15% Similarity=0.077 Sum_probs=146.7
Q ss_pred CCCccccchhHHHHHHHHH-hcC--C--CcceEEEe--eCCCCCCHHHHHHHHHhccCcc---CCCc-EEEEEEcCCCCC
Q 038733 157 KNRNMVGLDDRMEELLDLL-IEG--P--TQLSVVAI--PDSIGLDKTIFTAEAYNSSYVK---HYFD-YLAWIPSPYHYD 225 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L-~~~--~--~~~~vi~I--~G~gGvGKTtLA~~v~~~~~v~---~~F~-~~~wv~vs~~~~ 225 (519)
.+..++||+.+++.|.++| ... . .....+.| +|++|+||||||+.+++..... ..|+ ..+|+......+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3468999999999999998 421 1 12345555 9999999999999999842211 1233 357888767778
Q ss_pred HHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhc--CCcEEEEecccccCC-------C-------C----C--C
Q 038733 226 ADQILD-IVTVILLPFSMLSKIKDKDYEMKKIILGEYLM--TKRYLIVLDDVWSTD-------L-------K----D--G 282 (519)
Q Consensus 226 ~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv~~~~-------~-------w----~--g 282 (519)
...++. |+.+++.... ....+...+...+.+.+. +++++||+||++... . | . +
T Consensus 100 ~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQ----VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp HHHHHHHHHHHHTCCCC----CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred HHHHHHHHHHHhCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 889999 9999865321 112345666777777775 679999999998631 1 1 2 5
Q ss_pred --ceEEE----c--C-------------------C---C--------------------C------chhHHhhcC-----
Q 038733 283 --ENIRL----D--L-------------------V---P--------------------T------GGPLRATYQ----- 301 (519)
Q Consensus 283 --s~iiv----~--~-------------------V---p--------------------~------~~~i~~~c~----- 301 (519)
+++.+ . + + | . ...|++.|+
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 66333 1 1 1 0 0 445778888
Q ss_pred -CchhHHHHhcccchH------------HHHHHHhcC-C-chhhHHHhcCCChhHHHHHhhhccCC--CCCccChhHHHH
Q 038733 302 -GWPFLILYHGSISFE------------ENIVEAIET-P-LGLLTVICCKLPFHLKLCFLYLSVFP--AHLEISTRQLYQ 364 (519)
Q Consensus 302 -GlPLai~~~g~~L~~------------~~~~~~L~~-~-~~~l~~sy~~L~~~lk~cfly~s~FP--~~~~i~~~~Lv~ 364 (519)
|.|..+..+...... +.+...+.. . ...+.-++..||++.+.++..++.+. .+..++...+..
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~ 335 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQ 335 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 999655444322111 111111111 1 12344566889999999999898754 334566666555
Q ss_pred HHH--H---cCCCCchhHHHHHHHHHHHHHccCccccc
Q 038733 365 LWI--A---EGFIPDNSVAIAGKYLEQLINRGFVDTRK 397 (519)
Q Consensus 365 ~W~--a---eg~i~~~~e~~~~~~~~~Lv~rsll~~~~ 397 (519)
.|. + .|.- +........++++|++.+||....
T Consensus 336 ~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 336 RYEDASLTMYNVK-PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHSCCC-CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHhhcCCC-CCCHHHHHHHHHHHHhCCCEEeec
Confidence 442 2 1221 112455678999999999998764
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.24 E-value=2.1e-10 Score=115.63 Aligned_cols=239 Identities=11% Similarity=0.045 Sum_probs=148.4
Q ss_pred CCCCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCC------CHH
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHY------DAD 227 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~------~~~ 227 (519)
+......++||+.+++.|.+++..+ +++.|+|++|+|||||++.+.+.. + .+|+...... +..
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITRE 75 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHH
Confidence 3445678999999999999998753 689999999999999999999842 1 6677764332 566
Q ss_pred HHHH-HHHHhcCC-------------CCCCcCCCCCCHHHHHHHHHHHhcC-CcEEEEecccccCCC--------C----
Q 038733 228 QILD-IVTVILLP-------------FSMLSKIKDKDYEMKKIILGEYLMT-KRYLIVLDDVWSTDL--------K---- 280 (519)
Q Consensus 228 ~l~~-il~~l~~~-------------~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LlVLDDv~~~~~--------w---- 280 (519)
.++. +...+... .+........+...+...+.+.... ++++||+||++.... +
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 6777 76655420 0000001123556666777666653 489999999977432 1
Q ss_pred -------CCceEEE----c----------CC---------------C---------------------C---chhHHhhc
Q 038733 281 -------DGENIRL----D----------LV---------------P---------------------T---GGPLRATY 300 (519)
Q Consensus 281 -------~gs~iiv----~----------~V---------------p---------------------~---~~~i~~~c 300 (519)
.+..+|+ . +. | . ...|++.|
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t 235 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELL 235 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3445554 1 00 0 0 55788999
Q ss_pred CCchhHHHHhcccchH----HHHHHHhcC-CchhhHHHhcCC---ChhHHHHHhhhccCCCCCccChhHHHHHHHHc-CC
Q 038733 301 QGWPFLILYHGSISFE----ENIVEAIET-PLGLLTVICCKL---PFHLKLCFLYLSVFPAHLEISTRQLYQLWIAE-GF 371 (519)
Q Consensus 301 ~GlPLai~~~g~~L~~----~~~~~~L~~-~~~~l~~sy~~L---~~~lk~cfly~s~FP~~~~i~~~~Lv~~W~ae-g~ 371 (519)
+|.|+++..++..+.. ......+.+ ....+.-.+..+ ++..+..+..+|. + ..+...+....-+. |-
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~~~ 311 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKGTK 311 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHhCC
Confidence 9999999998865422 111111111 011111112222 7889999999988 2 24555665543221 11
Q ss_pred CCchhHHHHHHHHHHHHHccCccccccCCCCceeEEEE-ChhHHHHH
Q 038733 372 IPDNSVAIAGKYLEQLINRGFVDTRKRRAGGTINTCSV-RGRCRPVL 417 (519)
Q Consensus 372 i~~~~e~~~~~~~~~Lv~rsll~~~~~~~~g~~~~~~m-Hdlv~d~a 417 (519)
+ .......+++.|.+.+|+.... ..|++ |++++++.
T Consensus 312 ~---~~~~~~~~l~~L~~~gli~~~~-------~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 312 I---PEPRLYALLENLKKMNWIVEED-------NTYKIADPVVATVL 348 (350)
T ss_dssp C---CHHHHHHHHHHHHHTTSEEEET-------TEEEESSHHHHHHH
T ss_pred C---CHHHHHHHHHHHHhCCCEEecC-------CEEEEecHHHHHHH
Confidence 1 1456788999999999998652 23555 67777664
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.16 E-value=9.1e-10 Score=111.18 Aligned_cols=237 Identities=11% Similarity=0.039 Sum_probs=144.0
Q ss_pred CCCCCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCC-----CCHHH
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYH-----YDADQ 228 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~-----~~~~~ 228 (519)
+......++||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+. ... ..+|+..... .+...
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHH
Confidence 33456789999999999999 654 59999999999999999999984 322 2578877642 34555
Q ss_pred HHH-HHHHhcC-------------C-CC--CCc---CC-----CCCCHHHHHHHHHHHhcCCcEEEEecccccC-----C
Q 038733 229 ILD-IVTVILL-------------P-FS--MLS---KI-----KDKDYEMKKIILGEYLMTKRYLIVLDDVWST-----D 278 (519)
Q Consensus 229 l~~-il~~l~~-------------~-~~--~~~---~~-----~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~-----~ 278 (519)
+.. +...+.. . .+ .+. .. .......+...+.+.-. ++++||+||++.. .
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCch
Confidence 555 5544321 0 00 000 00 12244555555555433 4999999999762 3
Q ss_pred CC-----------CCceEEE----c----------C----C--------------------------------CC-chhH
Q 038733 279 LK-----------DGENIRL----D----------L----V--------------------------------PT-GGPL 296 (519)
Q Consensus 279 ~w-----------~gs~iiv----~----------~----V--------------------------------p~-~~~i 296 (519)
.| .+..+|+ . . . ++ ...|
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i 235 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVV 235 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHH
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 33 2455555 1 0 0 01 3578
Q ss_pred HhhcCCchhHHHHhcccchH----HHHHHHhc-C--C---chhhHHHhc--CCChhHHHHHhhhccCCCCCccChhHHHH
Q 038733 297 RATYQGWPFLILYHGSISFE----ENIVEAIE-T--P---LGLLTVICC--KLPFHLKLCFLYLSVFPAHLEISTRQLYQ 364 (519)
Q Consensus 297 ~~~c~GlPLai~~~g~~L~~----~~~~~~L~-~--~---~~~l~~sy~--~L~~~lk~cfly~s~FP~~~~i~~~~Lv~ 364 (519)
++.|+|.|+++..++..+.. ......+- + . ...-.+.++ .||+..+..+..+|. +. +...|..
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~ 310 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKR 310 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHH
Confidence 99999999999998876542 11121111 1 0 111122221 688999999999998 22 4455443
Q ss_pred HHH-HcCC-CCchhHHHHHHHHHHHHHccCccccccCCCCceeEEE-EChhHHHHH
Q 038733 365 LWI-AEGF-IPDNSVAIAGKYLEQLINRGFVDTRKRRAGGTINTCS-VRGRCRPVL 417 (519)
Q Consensus 365 ~W~-aeg~-i~~~~e~~~~~~~~~Lv~rsll~~~~~~~~g~~~~~~-mHdlv~d~a 417 (519)
..- ..|. +. ......+++.|++.+||.... ..|+ -|++++++.
T Consensus 311 ~~~~~~g~~~~---~~~~~~~L~~L~~~gli~~~~-------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 311 ALELEEGIEIS---DSEIYNYLTQLTKHSWIIKEG-------EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHCSCCC---HHHHHHHHHHHHHTTSEEESS-------SCEEESSHHHHHHT
T ss_pred HHHHhcCCCCC---HHHHHHHHHHHHhCCCEEecC-------CEEEecCHHHHHhh
Confidence 221 1231 11 455778999999999998653 2255 467887753
No 9
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.98 E-value=3.3e-08 Score=101.09 Aligned_cols=259 Identities=17% Similarity=0.164 Sum_probs=154.1
Q ss_pred CCccccchhHHHHHHHHHhc----CCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC-cEEEEEEcCCCCCHHHHHH-
Q 038733 158 NRNMVGLDDRMEELLDLLIE----GPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF-DYLAWIPSPYHYDADQILD- 231 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F-~~~~wv~vs~~~~~~~l~~- 231 (519)
+..++||+.+++.+..++.. .....+.+.|+|++|+|||||++.+.+. ..... -..+|++.+...+...+..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 36799999999999999875 2223348999999999999999999984 33221 2457788777778888999
Q ss_pred HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhc--CCcEEEEecccccCCCC------------C-----CceEEE--cCC
Q 038733 232 IVTVILLPFSMLSKIKDKDYEMKKIILGEYLM--TKRYLIVLDDVWSTDLK------------D-----GENIRL--DLV 290 (519)
Q Consensus 232 il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv~~~~~w------------~-----gs~iiv--~~V 290 (519)
++..++.... ....+...+...+...+. ++..+|+||+++....- . +..+|+ ...
T Consensus 94 l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 94 IARSLNIPFP----RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHTTCCCC----SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHhCccCC----CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 9988865321 122355666667766664 56889999999875311 1 333443 111
Q ss_pred ---------------------CC---------------------------chhHHhhc---------CCchhHHHHhcc-
Q 038733 291 ---------------------PT---------------------------GGPLRATY---------QGWPFLILYHGS- 312 (519)
Q Consensus 291 ---------------------p~---------------------------~~~i~~~c---------~GlPLai~~~g~- 312 (519)
|. ...|++.+ +|.|-.+..+..
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 10 23355555 455432222211
Q ss_pred cchH-----------HHHHHHhcC-CchhhHHHhcCCChhHHHHHhhhccCC---CCCccChhHHHHHHHH----cCCCC
Q 038733 313 ISFE-----------ENIVEAIET-PLGLLTVICCKLPFHLKLCFLYLSVFP---AHLEISTRQLYQLWIA----EGFIP 373 (519)
Q Consensus 313 ~L~~-----------~~~~~~L~~-~~~~l~~sy~~L~~~lk~cfly~s~FP---~~~~i~~~~Lv~~W~a----eg~i~ 373 (519)
.... +.+.+.+.. ....+.-.+..||.+.+.++..++.+. .+..+....+...+.. .|...
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 329 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP 329 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC
Confidence 1100 111111111 133445557789998888887777654 2325666666665533 23211
Q ss_pred chhHHHHHHHHHHHHHccCcccccc----CCCCceeEEEE----ChhHHHHHHHHhcc
Q 038733 374 DNSVAIAGKYLEQLINRGFVDTRKR----RAGGTINTCSV----RGRCRPVLLTVAFK 423 (519)
Q Consensus 374 ~~~e~~~~~~~~~Lv~rsll~~~~~----~~~g~~~~~~m----Hdlv~d~a~~~~~~ 423 (519)
........++++|...+++..... +..|+...+++ ||++..+...+..+
T Consensus 330 -~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 330 -RVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp -CCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 124557789999999999998654 22243334443 36666555554443
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.88 E-value=5.7e-08 Score=99.12 Aligned_cols=116 Identities=12% Similarity=0.054 Sum_probs=85.4
Q ss_pred CCCccccchhHHHHHHHHHhcC--CCcceEEEeeCCCCCCHHHHHHHHHhccCcc----CCCcEEEEEEcCCCCCHHHHH
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG--PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVK----HYFDYLAWIPSPYHYDADQIL 230 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~----~~F~~~~wv~vs~~~~~~~l~ 230 (519)
.+..++||+.+++.+..++... ....+.+.|+|++|+||||||+.+++...-. ..--..+|++.....+...++
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 3478999999999999998542 3346788999999999999999999842111 001245788888888888999
Q ss_pred H-HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhc--CCcEEEEeccccc
Q 038733 231 D-IVTVILLPFSMLSKIKDKDYEMKKIILGEYLM--TKRYLIVLDDVWS 276 (519)
Q Consensus 231 ~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv~~ 276 (519)
. ++..++.... ....+...+...+...+. +++.+|+||++..
T Consensus 97 ~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~ 141 (387)
T 2v1u_A 97 SAIAEAVGVRVP----FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF 141 (387)
T ss_dssp HHHHHHHSCCCC----SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH
T ss_pred HHHHHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhh
Confidence 9 9999865322 123345666777777773 4688999999975
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.62 E-value=7.7e-08 Score=98.33 Aligned_cols=115 Identities=10% Similarity=-0.064 Sum_probs=84.3
Q ss_pred CccccchhHHHHHHHHHhc--CCCcceEEEeeCCCCCCHHHHHHHHHhccCc----cCC--CcEEEEEEcCCCC-CHHHH
Q 038733 159 RNMVGLDDRMEELLDLLIE--GPTQLSVVAIPDSIGLDKTIFTAEAYNSSYV----KHY--FDYLAWIPSPYHY-DADQI 229 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v----~~~--F~~~~wv~vs~~~-~~~~l 229 (519)
..++||+.+++.+.+++.. .....+.+.|+|++|+||||||+.+++...- ... ....+|++.+... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999988865 2334568999999999999999999984211 111 2346788776666 78888
Q ss_pred HH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEeccccc
Q 038733 230 LD-IVTVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 230 ~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~ 276 (519)
+. ++..+..... .....+...+...+.+.+..++.+|||||++.
T Consensus 100 ~~~l~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~ 144 (384)
T 2qby_B 100 LSSLAGKLTGFSV---PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDT 144 (384)
T ss_dssp HHHHHHHHHCSCC---CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHH
T ss_pred HHHHHHHhcCCCC---CCCCCCHHHHHHHHHHHhccCCCEEEEECHHH
Confidence 88 9988853221 11233456777788888887777999999975
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.47 E-value=1.3e-07 Score=96.31 Aligned_cols=114 Identities=12% Similarity=0.095 Sum_probs=82.4
Q ss_pred CCCccccchhHHHHHHHHHhcC--CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCC---cEEEEEEcCCCCCHHHHHH
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG--PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF---DYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F---~~~~wv~vs~~~~~~~l~~ 231 (519)
.+..++||+.+++.+.+++... ......+.|+|++|+||||||+.+++. ....+ ...+|+......+...++.
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 3478999999999999998752 334668899999999999999999984 32222 2456777666667777888
Q ss_pred -HHHHhcCCCCCCcCCCCCCHHHHHHHHHHHhc--CCcEEEEeccccc
Q 038733 232 -IVTVILLPFSMLSKIKDKDYEMKKIILGEYLM--TKRYLIVLDDVWS 276 (519)
Q Consensus 232 -il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LlVLDDv~~ 276 (519)
++..++.... ....+...+...+.+.+. +++.+||+|+++.
T Consensus 96 ~i~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~ 139 (386)
T 2qby_A 96 DLLESLDVKVP----FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDA 139 (386)
T ss_dssp HHTTTTSCCCC----SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHH
T ss_pred HHHHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhh
Confidence 8877754321 122345666666766664 4589999999976
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.26 E-value=3.6e-06 Score=79.19 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=40.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+++|++..++.+..++.... ....+.|+|++|+||||||+.+++.
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999997653 2358889999999999999999874
No 14
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.14 E-value=4.7e-06 Score=82.95 Aligned_cols=110 Identities=14% Similarity=0.063 Sum_probs=64.3
Q ss_pred CCccccchhHHHHHHHHHhcC---CCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHH
Q 038733 158 NRNMVGLDDRMEELLDLLIEG---PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVT 234 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~ 234 (519)
-.+++|++..++.+..++... ......+.|+|++|+||||||+.+++. .... .+++..+......++...+.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHHHHHHHHT
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChHHHHHHHH
Confidence 457999999999998888631 123457889999999999999999883 3222 34555544444444444322
Q ss_pred H-hcCCCC-CCcCCCCCCHHHHHHHHHHHhcCCcEEEEecc
Q 038733 235 V-ILLPFS-MLSKIKDKDYEMKKIILGEYLMTKRYLIVLDD 273 (519)
Q Consensus 235 ~-l~~~~~-~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDD 273 (519)
. +....- .-++++... ......+...+....+.+|.++
T Consensus 86 ~~~~~~~~l~lDEi~~l~-~~~~~~L~~~l~~~~~~~v~~~ 125 (324)
T 1hqc_A 86 NSLEEGDILFIDEIHRLS-RQAEEHLYPAMEDFVMDIVIGQ 125 (324)
T ss_dssp TTCCTTCEEEETTTTSCC-HHHHHHHHHHHHHSEEEECCSS
T ss_pred HhccCCCEEEEECCcccc-cchHHHHHHHHHhhhhHHhccc
Confidence 2 221110 012333333 2345556666666665555544
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.10 E-value=4.2e-06 Score=75.82 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=39.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-..++|+++.++.+.+++.... ...+.|+|++|+||||||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999997643 456789999999999999999874
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.4e-05 Score=79.48 Aligned_cols=114 Identities=10% Similarity=0.035 Sum_probs=75.7
Q ss_pred ccccchhHHHHHHHHHhcC--CCcceEEEeeCCCCCCHHHHHHHHHhccCccC---CC-c-EEEEEEcCCCCCHHHHHH-
Q 038733 160 NMVGLDDRMEELLDLLIEG--PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKH---YF-D-YLAWIPSPYHYDADQILD- 231 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~---~F-~-~~~wv~vs~~~~~~~l~~- 231 (519)
.+.||+++++.|...|... ......+-|+|++|+|||++++.+.+...... .. + ..+.++...-.+...+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999999888752 34567889999999999999999998532111 11 1 345666666678888999
Q ss_pred HHHHhcCCCCCCcCCCCCCHHHHHHHHHHH--hcCCcEEEEecccccC
Q 038733 232 IVTVILLPFSMLSKIKDKDYEMKKIILGEY--LMTKRYLIVLDDVWST 277 (519)
Q Consensus 232 il~~l~~~~~~~~~~~~~~~~~l~~~l~~~--L~~kr~LlVLDDv~~~ 277 (519)
|++++.+... + .......+...+... -.++.++++||++..-
T Consensus 101 I~~~L~g~~~-~---~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 101 IWFAISKENL-C---GDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHSCCC------CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHhcCCCC-C---chHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 9999975421 0 112233343333332 2457899999998654
No 17
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.98 E-value=2.1e-05 Score=72.83 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=39.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|++..++.+.+++.... .+.+.|+|++|+||||||+.+++.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999998754 334889999999999999999873
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=5.8e-05 Score=74.68 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+++.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH
Confidence 3569999999999999998754 333889999999999999999884
No 19
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.41 E-value=0.00031 Score=64.61 Aligned_cols=53 Identities=13% Similarity=0.026 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhcCCCc--ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc
Q 038733 166 DRMEELLDLLIEGPTQ--LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS 220 (519)
Q Consensus 166 ~~~~~l~~~L~~~~~~--~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v 220 (519)
..++.+.+++...... ...+.|+|++|+||||||+.+++. ........+|++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 3455566666554322 268889999999999999999984 3333334556654
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.39 E-value=0.0004 Score=67.53 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=40.4
Q ss_pred CCCCCccccchhHHHHHHHHHhcC-----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 155 SSKNRNMVGLDDRMEELLDLLIEG-----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...-.+++|.+..++.|.+.+... -....-+.|+|++|+||||||+.+++.
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344567999999999998887531 123456889999999999999999984
No 21
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.34 E-value=0.00052 Score=65.65 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=36.8
Q ss_pred CCCccccchhHHHHHHHHHh---cCC-------CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLI---EGP-------TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|.+..++.+.+++. ... ...+-+.++|++|+|||++|+.+++.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34578999988888876653 211 23456789999999999999999983
No 22
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.31 E-value=0.00023 Score=70.43 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+++.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH
Confidence 3469999999999999998764 344889999999999999999884
No 23
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.30 E-value=0.00018 Score=64.59 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=39.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|++.+++.+.+.+.... ...+.|+|++|+||||||+.+.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999997643 456689999999999999999874
No 24
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.28 E-value=0.00037 Score=62.90 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHhcCC-CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 164 LDDRMEELLDLLIEGP-TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 164 r~~~~~~l~~~L~~~~-~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
....++.+.+++..-. ..-..+.|+|+.|+||||||+.+++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555555554322 23578999999999999999999884
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.19 E-value=0.0018 Score=64.36 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=38.8
Q ss_pred CCCCccccchhHHHHHHHHHhc---------C-CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIE---------G-PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.+++|.+..++.|.+.+.. . ....+-+.++|++|+|||+||+.+++.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 3345789999999998887642 0 122467889999999999999999984
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.18 E-value=0.00099 Score=65.16 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=38.9
Q ss_pred CCCccccchhHHHHHHHHHhcC----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|.+..++.+.+++... ....+.+.|+|++|+||||+|+.+.+.
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999998887431 112467889999999999999999983
No 27
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.15 E-value=0.0014 Score=66.09 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=39.0
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|++..++.+.+.+..+. ....+.|+|+.|+||||+|+.+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997653 2347789999999999999999874
No 28
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.12 E-value=0.0017 Score=62.01 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=35.9
Q ss_pred CCCccccchhHHHHHHHHHh---cCC-------CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLI---EGP-------TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|.+..++.+.+.+. ... ...+-+.|+|++|+||||||+.+.+.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34578999888887766543 210 11334789999999999999999984
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.07 E-value=0.00084 Score=67.85 Aligned_cols=49 Identities=8% Similarity=0.063 Sum_probs=39.0
Q ss_pred CCCccccchhHHHHHHHHHhc----------CCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIE----------GPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++.
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999888752 1123567889999999999999999983
No 30
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.90 E-value=0.0022 Score=68.17 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=40.8
Q ss_pred CCCccccchhHHHHHHHHHhcCC---------------CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEGP---------------TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~---------------~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|++..++.+.++|.... ...+.+.|+|++|+||||+|+.+.+.
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44679999999999999997510 13468899999999999999999984
No 31
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.89 E-value=0.00097 Score=66.31 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=39.8
Q ss_pred CCCCCccccchhHHHHHHHHHhc----------CCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 155 SSKNRNMVGLDDRMEELLDLLIE----------GPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 155 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...-.+++|.+..++.|.+++.. .....+-+-++|++|+|||+||+.+++.
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34456799999999999988731 1122456889999999999999999983
No 32
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.86 E-value=0.0023 Score=65.33 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=39.4
Q ss_pred CCCCccccchhHHHHHHHHHhcC----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIEG----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.+++|.+..++.|.+++... ....+-+.|+|.+|+|||+||+.+.+.
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34457999999999999887321 112467889999999999999999883
No 33
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.85 E-value=0.0007 Score=58.96 Aligned_cols=46 Identities=9% Similarity=-0.006 Sum_probs=35.6
Q ss_pred ccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 160 NMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+++|....+.++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999888642222334679999999999999999984
No 34
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.84 E-value=0.0034 Score=61.66 Aligned_cols=49 Identities=24% Similarity=0.213 Sum_probs=39.0
Q ss_pred CCCccccchhHHHHHHHHHhcC-----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG-----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|.+..++.|.+++... -...+.+.++|++|+||||||+.+++.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 3456999999999988877531 123567889999999999999999984
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.82 E-value=0.006 Score=60.31 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=40.3
Q ss_pred CCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|.+..++.+.+++..+. ...++-+.|++|+||||+|+.+.+.
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 34679999999999999998653 3457788899999999999999884
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.79 E-value=0.0016 Score=63.87 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=36.0
Q ss_pred ccccchhHHHHHHHHHhcC-------------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 160 NMVGLDDRMEELLDLLIEG-------------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+++|.+..++.|.+++... ......+.|+|++|+|||+||+.+.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5899999998888776421 233557889999999999999987764
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.77 E-value=0.003 Score=65.82 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=39.1
Q ss_pred CCCccccchhHH---HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRM---EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|.+..+ ..+...+.... ...+.++|++|+||||||+.+.+.
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH
Confidence 345789998888 77778787655 578899999999999999999983
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.63 E-value=0.0056 Score=59.02 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=36.0
Q ss_pred CCccccchhHHHHHHH-------HHhcC-CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLD-------LLIEG-PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~-------~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...++|....++++.. .+... .....-+-|+|++|+|||+||+.+.+.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3468888887777766 33221 334678889999999999999999984
No 39
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.61 E-value=0.0028 Score=71.62 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=39.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-+.++||+.++..+++.|.... ..-+.++|.+|+||||||+.+.+.
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 34569999999999999997654 334678999999999999999874
No 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.50 E-value=0.0049 Score=62.11 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=37.9
Q ss_pred CCCccccchhHHHHHHHHHhcC----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|.+..++.|.+.+... ....+-|.++|++|+|||+||+.+++.
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999998877311 112345788999999999999999994
No 41
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.008 Score=62.11 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=38.7
Q ss_pred CCCCccccchhHHHHHHHHHhc---C--------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIE---G--------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.++.|.++.+++|.+.+.- . -...+=|-++|++|+|||+||+++.+.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3445788999998888776643 1 123567889999999999999999993
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.41 E-value=0.0043 Score=64.51 Aligned_cols=96 Identities=21% Similarity=0.214 Sum_probs=54.8
Q ss_pred ccc-cchhH--HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCc--EEEEEEcCCCCCHHHHHH-HH
Q 038733 160 NMV-GLDDR--MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFD--YLAWIPSPYHYDADQILD-IV 233 (519)
Q Consensus 160 ~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~--~~~wv~vs~~~~~~~l~~-il 233 (519)
+++ |.... ...+..+...... ...+.|+|++|+||||||+.+++. ....|. ..++++. ..+.. +.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHH
Confidence 444 64333 3344444444332 678899999999999999999983 322221 2344432 33444 55
Q ss_pred HHhcCCCCCCcCCCCCCHHHHHHHHHHHhcCCcEEEEecccccCC
Q 038733 234 TVILLPFSMLSKIKDKDYEMKKIILGEYLMTKRYLIVLDDVWSTD 278 (519)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~L~~kr~LlVLDDv~~~~ 278 (519)
..+... ... .+...+..+.-+|++||+....
T Consensus 177 ~~~~~~----------~~~----~~~~~~~~~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 177 DSMKEG----------KLN----EFREKYRKKVDILLIDDVQFLI 207 (440)
T ss_dssp HHHHTT----------CHH----HHHHHHTTTCSEEEEECGGGGS
T ss_pred HHHHcc----------cHH----HHHHHhcCCCCEEEEeCccccc
Confidence 555431 111 2333344366799999997654
No 43
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.0074 Score=62.22 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=38.9
Q ss_pred CCCCccccchhHHHHHHHHHhc---C--------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIE---G--------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~---~--------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.++.|.++.++.|.+.+.. . -...+=|-++|++|+|||+||+++.+.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4446789999999988876642 1 123556889999999999999999993
No 44
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.40 E-value=0.0028 Score=66.44 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-+.++|++.+++.+...|.... ..-+.++|.+|+|||++|+.+.+.
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999997643 334568999999999999999873
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.39 E-value=0.007 Score=62.94 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=39.2
Q ss_pred CCCCccccchhHHHHHHHHHhc----------CCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIE----------GPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.+++|.+..++.|.+.+.. .....+-+.++|++|+|||+||+.+++.
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3446799999999999887731 0123467889999999999999999984
No 46
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.38 E-value=0.0093 Score=66.38 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=39.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-+.++||+.+++.+.+.|.... ..-+.++|.+|+||||+|+.+.+.
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 34579999999999999997653 345678999999999999998873
No 47
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.34 E-value=0.0024 Score=63.65 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=40.3
Q ss_pred CCCccccchhHHHHHHHHHhcC---CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEG---PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|++..++.+..++... ......+.|+|++|+|||+||+.+.+.
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4457999999999999988752 234556889999999999999999883
No 48
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.34 E-value=0.02 Score=52.76 Aligned_cols=90 Identities=10% Similarity=0.045 Sum_probs=53.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCC-------CCCcCCCCCCHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPF-------SMLSKIKDKDYEMK 254 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~-------~~~~~~~~~~~~~l 254 (519)
-.++.|+|.+|+|||||+..+.. . .-..++|+.....++..++..+....+... .........+....
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 56899999999999999999887 1 123577888776667666555443322100 00000011122344
Q ss_pred HHHHHHHhcCCcEEEEeccccc
Q 038733 255 KIILGEYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 255 ~~~l~~~L~~kr~LlVLDDv~~ 276 (519)
...++..+..+.-+||+|.+..
T Consensus 95 ~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhhcCCCEEEEcCcHH
Confidence 5555555544567999998743
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0067 Score=61.83 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=39.1
Q ss_pred CCCCCCccccchhHHHHHHHHHhcC-----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEG-----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
|...-+++.|.++.+++|.+.+.-. -...+=|-++|++|+|||.||+++.+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3344467889999998887765421 123466789999999999999999993
No 50
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.31 E-value=0.0098 Score=62.26 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=35.4
Q ss_pred CCccccchhHHHHHHHHHhc--CC--------CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIE--GP--------TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.++.++++.+.+.. .. .-.+-+.++|++|+||||||+.+.+.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34689999888777766532 10 11234779999999999999999984
No 51
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.31 E-value=0.0029 Score=62.50 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=44.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEc--CCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPS--PYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILG 259 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~v--s~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 259 (519)
-+++.|+|++|+||||||.++... . -..+.|++. ....+ ....+.+.....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~~~eE~v~--------------------~~~~~le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATVRFGEPLS--------------------GYNTDFNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEEEBSCSST--------------------TCBCCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEecchhhhh--------------------hhhcCHHHHHHHHH
Confidence 456789999999999999998874 1 112345554 22211 01134566666677
Q ss_pred HHhcCCcEEEEeccccc
Q 038733 260 EYLMTKRYLIVLDDVWS 276 (519)
Q Consensus 260 ~~L~~kr~LlVLDDv~~ 276 (519)
+.+...+ +||+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 7776666 999999854
No 52
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.01 Score=61.39 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=38.0
Q ss_pred CCCccccchhHHHHHHHHHhc-----------CCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIE-----------GPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.++.|.++.+++|.+.+.- +-...+=|-++|++|+|||+||+++.+.
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 335788999999988876532 1124667889999999999999999993
No 53
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.23 E-value=0.0036 Score=65.97 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHHHHhcC-----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEG-----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..+++|.+++... -...+-+-|+|.+|+|||+||+.+.+.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 356899999999998887532 123456889999999999999999883
No 54
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.22 E-value=0.0099 Score=55.77 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=55.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccC----CCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCC-CcC---CCCCCHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKH----YFDYLAWIPSPYHYDADQILDIVTVILLPFSM-LSK---IKDKDYEM 253 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~-~~~---~~~~~~~~ 253 (519)
-.++.|+|.+|+|||||+..+........ .-..++|+.....++..++..++..++..... .+. ....+..+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 46999999999999999999887422211 12468888877766666655554444321100 000 01122232
Q ss_pred ---HHHHHHHHhc-CCcEEEEeccccc
Q 038733 254 ---KKIILGEYLM-TKRYLIVLDDVWS 276 (519)
Q Consensus 254 ---l~~~l~~~L~-~kr~LlVLDDv~~ 276 (519)
....+.+.+. .+.-+||+|.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2333555554 3667999998743
No 55
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.22 E-value=0.00091 Score=58.11 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=33.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+.+++|.+..++++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 3 ~~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 3 AFDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp -----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 346899999999998887642112234678999999999999999883
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.19 E-value=0.0038 Score=62.27 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=39.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|++..++.+..++.... ...+.++|++|+||||+|+.+.+.
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999997654 223889999999999999999874
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.19 E-value=0.0055 Score=57.22 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=38.5
Q ss_pred Cccccc---hhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcC
Q 038733 159 RNMVGL---DDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSP 221 (519)
Q Consensus 159 ~~~vGr---~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs 221 (519)
.+++|. +..++.+..++... ....+.|+|++|+||||||+.+++. .........|+..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLG 89 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence 456663 35555666665543 3567889999999999999999884 32222345566653
No 58
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0099 Score=61.37 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=39.9
Q ss_pred CCCCCCccccchhHHHHHHHHHhc----C-------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIE----G-------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
|...-.++.|.++.+++|.+.+.. . -...+=|-++|++|+|||+||+++.+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 344456789999999998876432 1 123567889999999999999999993
No 59
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.10 E-value=0.0055 Score=68.66 Aligned_cols=48 Identities=13% Similarity=0.186 Sum_probs=38.6
Q ss_pred CCCccccchhHHHHHHHHHhc-----------CCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 157 KNRNMVGLDDRMEELLDLLIE-----------GPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.-.+++|.+..+++|.+++.. .-.....|.|+|.+|+||||||+.+.+
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 335789999999999888753 112345789999999999999999998
No 60
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.08 E-value=0.0053 Score=61.78 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=37.6
Q ss_pred CCccccchhHHHH---HHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEE---LLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-++++|++..++. +...+.......+.+-|+|++|+|||+||+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999988776 45555554433468899999999999999999984
No 61
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.98 E-value=0.0055 Score=56.59 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 167 RMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.++|.+.+......-.+|+|+|..|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345555555543345789999999999999999998773
No 62
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.97 E-value=0.04 Score=55.11 Aligned_cols=94 Identities=9% Similarity=0.071 Sum_probs=58.3
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccC----CCcEEEEEEcCCCCCHHHHHHHHHHhcCCCC-------CCcCCCCC
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKH----YFDYLAWIPSPYHYDADQILDIVTVILLPFS-------MLSKIKDK 249 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~-------~~~~~~~~ 249 (519)
.-.++.|.|.+|+||||||..+........ .=..++|++....++..++..++..++.... ........
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 467999999999999999998877422211 1246889998888888887775555543210 00000111
Q ss_pred CHHHHHHHHHHHhc---CCcEEEEeccc
Q 038733 250 DYEMKKIILGEYLM---TKRYLIVLDDV 274 (519)
Q Consensus 250 ~~~~l~~~l~~~L~---~kr~LlVLDDv 274 (519)
....+...+...+. .+--+||+|.+
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 22244445555554 45569999987
No 63
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.93 E-value=0.024 Score=54.85 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=33.2
Q ss_pred CCCccccchhHHHHHHHHHhc---C---------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIE---G---------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~---~---------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.++.|.++.++.|.+.+.. . ..... +.++|++|+||||||+.+.+.
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 345688888888888765421 1 11122 899999999999999999984
No 64
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.93 E-value=0.0045 Score=59.39 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=34.4
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|.+..+.++.+.+..-......+-|+|..|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35889999999988877642222345679999999999999999984
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.90 E-value=0.0048 Score=61.61 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=37.0
Q ss_pred CCccccchhHHHHHHHHHhcC---CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEG---PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-+.++|.+..++.+...+... ......+.++|+.|+||||||+.+.+.
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 346788888778777666532 223467899999999999999999983
No 66
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.87 E-value=0.018 Score=57.21 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=57.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCC----CcEEEEEEcCCCCCHHHHHHHHHHhcCCCCC-CcC---CCCCCHH-
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHY----FDYLAWIPSPYHYDADQILDIVTVILLPFSM-LSK---IKDKDYE- 252 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~----F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~-~~~---~~~~~~~- 252 (519)
-.++.|.|.+|+||||||..+......... =..++|++....++..++.+++..++..... .+. ....+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 468999999999999999888764222110 2467899988888888877755555432100 000 0112223
Q ss_pred --HHHHHHHHHhc--CCcEEEEeccc
Q 038733 253 --MKKIILGEYLM--TKRYLIVLDDV 274 (519)
Q Consensus 253 --~l~~~l~~~L~--~kr~LlVLDDv 274 (519)
++...+...++ .+--+||+|.+
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 34455566654 45668999987
No 67
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.84 E-value=0.0047 Score=60.56 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+.+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH
Confidence 3468999999999999887653 334889999999999999999873
No 68
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.83 E-value=0.0058 Score=59.81 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=22.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567888999999999999999993
No 69
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.77 E-value=0.0054 Score=59.89 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcC------------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEG------------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|.+..++.+...+... .....-+.++|.+|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998887641 112446779999999999999999883
No 70
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.022 Score=58.36 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=38.3
Q ss_pred CCCCccccchhHHHHHHHHHhc----C-------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIE----G-------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.++.|.++.+++|.+.+.- . -...+=|-++|++|+|||.||+++.+.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 3445678899988888776542 1 123567889999999999999999993
No 71
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.72 E-value=0.013 Score=65.01 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=38.2
Q ss_pred CCCCccccchhHHHHHHHHHhc----CC-------CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIE----GP-------TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~----~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.++.|.++.+++|.+++.- .+ ...+-|-++|++|+|||+||+++.+.
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3445688999988888876532 11 23567889999999999999999993
No 72
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.72 E-value=0.01 Score=54.39 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHhcC-CCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 164 LDDRMEELLDLLIEG-PTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 164 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
|++.++.|.+.+... .....+|+|+|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456677788877653 23467999999999999999999876
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.71 E-value=0.0087 Score=66.64 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=38.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-+.++|++.+++.+...|.... ..-+.++|.+|+|||++|+.+.+.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999997643 334679999999999999999874
No 74
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.64 E-value=0.0074 Score=57.86 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=36.4
Q ss_pred CCCccccchhHHHHHHHHHhc----------CCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIE----------GPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|.+..++.+.+.+.. .....+-+.++|++|+|||+||+.+++.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 345799999888888776641 0011233779999999999999999984
No 75
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.62 E-value=0.026 Score=59.37 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=36.0
Q ss_pred CCCCccccchhHHHHHHHHHh---cCC-------CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLI---EGP-------TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.+++|.++.+.++.+.+. ... .-.+-+.|+|++|+||||||+.+.+.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344579999888777766543 210 01223889999999999999999984
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.60 E-value=0.0069 Score=60.57 Aligned_cols=44 Identities=9% Similarity=-0.039 Sum_probs=36.1
Q ss_pred CccccchhHHHHHHHHH-hcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 159 RNMVGLDDRMEELLDLL-IEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+++|.+..++.+.+++ ..+. ... +.|+|+.|+||||+|+.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 46899999999988888 4433 233 89999999999999998877
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.58 E-value=0.0079 Score=59.20 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|....+.++.+.+..-......|-|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 46899999999999888653222345679999999999999999984
No 78
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.56 E-value=0.023 Score=57.12 Aligned_cols=90 Identities=19% Similarity=0.069 Sum_probs=54.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGE 260 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 260 (519)
.-.++.|.|.+|+||||||..+....... =..++|+.....++.. .++.++.......-....+.++....+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 35799999999999999999888742211 1246788877777654 22333321110000122355666666666
Q ss_pred Hhc-CCcEEEEeccccc
Q 038733 261 YLM-TKRYLIVLDDVWS 276 (519)
Q Consensus 261 ~L~-~kr~LlVLDDv~~ 276 (519)
.++ .+.-++|+|.+-.
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 554 4455889998743
No 79
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.53 E-value=0.023 Score=56.26 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=58.1
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccC---------CC-----cEEEEEEcCCCCCHHHHHHHHHHhcCCCCC-CcC
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKH---------YF-----DYLAWIPSPYHYDADQILDIVTVILLPFSM-LSK 245 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~---------~F-----~~~~wv~vs~~~~~~~l~~il~~l~~~~~~-~~~ 245 (519)
.-.++.|.|.+|+||||||..+........ .. ..++|++....++..++.+++..++..... .+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 357999999999999999988876422211 11 467899988888888887755555432100 000
Q ss_pred ---CCCCCHH---HHHHHHHHHhcC--CcEEEEeccc
Q 038733 246 ---IKDKDYE---MKKIILGEYLMT--KRYLIVLDDV 274 (519)
Q Consensus 246 ---~~~~~~~---~l~~~l~~~L~~--kr~LlVLDDv 274 (519)
....+.+ ++...+...++. +--+||+|.+
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112223 344556666643 4558999987
No 80
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.46 E-value=0.0069 Score=53.44 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.8
Q ss_pred eEEEeeCCCCCCHHHHHHHH
Q 038733 183 SVVAIPDSIGLDKTIFTAEA 202 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v 202 (519)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 81
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.44 E-value=0.0087 Score=58.58 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=37.2
Q ss_pred ccccchhHHHHHHHHHhcC-------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 160 NMVGLDDRMEELLDLLIEG-------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.++|.+..++.+...+... ......+.++|++|+||||+|+.+.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 5789999998888887652 112458999999999999999999883
No 82
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.43 E-value=0.029 Score=55.82 Aligned_cols=25 Identities=24% Similarity=0.061 Sum_probs=22.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+++|+|+.|+||||+++.+..-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988773
No 83
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.42 E-value=0.016 Score=56.55 Aligned_cols=83 Identities=11% Similarity=0.025 Sum_probs=44.2
Q ss_pred CCcceEEEeeCCCCCCHHHHHHHHHhccCccC-CCcEEEEEEcCCCCCHHHHHH-HHHHh-----cCCCCCCcCCCCCCH
Q 038733 179 PTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKH-YFDYLAWIPSPYHYDADQILD-IVTVI-----LLPFSMLSKIKDKDY 251 (519)
Q Consensus 179 ~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~-~F~~~~wv~vs~~~~~~~l~~-il~~l-----~~~~~~~~~~~~~~~ 251 (519)
.....+|+|+|..|+||||||+.+........ .......|+...-+-...... +...- ....+ .....+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g---~p~a~d~ 104 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRG---LPGTHDM 104 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSC---STTSBCH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhcc---CcchhHH
Confidence 44578999999999999999998876321110 022344445443222233344 43321 11111 1234566
Q ss_pred HHHHHHHHHHhcC
Q 038733 252 EMKKIILGEYLMT 264 (519)
Q Consensus 252 ~~l~~~l~~~L~~ 264 (519)
..+.+.+.....+
T Consensus 105 ~~l~~~l~~l~~g 117 (290)
T 1odf_A 105 KLLQEVLNTIFNN 117 (290)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHhhcc
Confidence 6676666665544
No 84
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.40 E-value=0.012 Score=58.76 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..++.|..++..+. .+-+.++|+.|+||||+|+.+.+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 3468899988999888887654 333889999999999999999873
No 85
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.29 E-value=0.014 Score=58.85 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=36.2
Q ss_pred ccccchhHHHHHHHHHh-------------cCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 160 NMVGLDDRMEELLDLLI-------------EGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999888873 11113457889999999999999999983
No 86
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.24 E-value=0.028 Score=56.53 Aligned_cols=88 Identities=17% Similarity=0.020 Sum_probs=51.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGEY 261 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 261 (519)
-+++.|.|.+|+||||||..+....... =..++|++....++... +..++.....-.-....+.+++...+...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~~----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY----ARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHH----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHHH----HHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 5689999999999999998877632211 13578998877776432 33333211000000122445555555544
Q ss_pred hc-CCcEEEEecccc
Q 038733 262 LM-TKRYLIVLDDVW 275 (519)
Q Consensus 262 L~-~kr~LlVLDDv~ 275 (519)
.+ .+--+||+|.+-
T Consensus 137 ~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 137 ARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHTCCSEEEEECGG
T ss_pred HhccCCCEEEEcCHH
Confidence 43 344589999874
No 87
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.17 E-value=0.02 Score=56.50 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+..++.........+.|+|++|+||||||+.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34455555444334567889999999999999999984
No 88
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.16 E-value=0.035 Score=55.68 Aligned_cols=90 Identities=17% Similarity=0.061 Sum_probs=53.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGE 260 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 260 (519)
.-.++.|.|.+|+||||||..+...... .=..++|++....++.. .++.++.......-....+.++....+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPE----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHH----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 3568999999999999999888753221 11357888887776643 22333321110000112345566666655
Q ss_pred HhcC-CcEEEEeccccc
Q 038733 261 YLMT-KRYLIVLDDVWS 276 (519)
Q Consensus 261 ~L~~-kr~LlVLDDv~~ 276 (519)
..+. +--+||+|.+-.
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 5543 455899998743
No 89
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.13 E-value=0.011 Score=52.29 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=20.3
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 90
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.10 E-value=0.011 Score=53.41 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999873
No 91
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.09 E-value=0.039 Score=55.38 Aligned_cols=95 Identities=11% Similarity=0.097 Sum_probs=54.7
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCC----cEEEEEEcCCCCCHHHHHHHHHHhcCCCC-------CCcCCCCC
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYF----DYLAWIPSPYHYDADQILDIVTVILLPFS-------MLSKIKDK 249 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F----~~~~wv~vs~~~~~~~l~~il~~l~~~~~-------~~~~~~~~ 249 (519)
.-.++.|+|..|+|||||+..+.......... ..++|++....+...++..++........ ........
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 46799999999999999999988742111111 24588887666655555445554332100 00000111
Q ss_pred CHHHHHHHHHHHhc------CCcEEEEecccc
Q 038733 250 DYEMKKIILGEYLM------TKRYLIVLDDVW 275 (519)
Q Consensus 250 ~~~~l~~~l~~~L~------~kr~LlVLDDv~ 275 (519)
...++...+...+. .+.-+||+|.+-
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 12334455555554 356799999873
No 92
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.08 E-value=0.012 Score=53.06 Aligned_cols=24 Identities=4% Similarity=0.106 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999873
No 93
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.06 E-value=0.023 Score=59.24 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=36.6
Q ss_pred CCccccchhHHHHHHHH---HhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDL---LIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~---L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+++|.++.++.+..+ +..+....+-+-++|++|+|||+||+.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 46799999988865544 4443333456889999999999999999984
No 94
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.06 E-value=0.012 Score=52.48 Aligned_cols=22 Identities=5% Similarity=-0.010 Sum_probs=20.5
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 95
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.02 E-value=0.014 Score=51.99 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=20.5
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 96
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.98 E-value=0.012 Score=53.70 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 97
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.98 E-value=0.011 Score=52.54 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=20.5
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999988
No 98
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.85 E-value=0.051 Score=55.50 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=38.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccC----CCcEEEEEEcCCCCCHHHHHHHHHHhcC
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKH----YFDYLAWIPSPYHYDADQILDIVTVILL 238 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~----~F~~~~wv~vs~~~~~~~l~~il~~l~~ 238 (519)
-.++.|+|..|+|||||+..+.-...... .-..++|+.....++...+..+++.++.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl 238 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGL 238 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCC
Confidence 56999999999999999997653211111 2346888887777777665546665543
No 99
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.84 E-value=0.018 Score=54.75 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=34.1
Q ss_pred CCCccccchhHHHHHHHHHhc--CC--------CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 157 KNRNMVGLDDRMEELLDLLIE--GP--------TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|.+..+.++.++... .. .-.+-+.|+|+.|+||||||+.+.+.
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345788988777766554431 10 00122889999999999999999984
No 100
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.78 E-value=0.018 Score=52.67 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|.|+|+.|.|||||++.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999873
No 101
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.78 E-value=0.054 Score=54.68 Aligned_cols=88 Identities=14% Similarity=-0.001 Sum_probs=53.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGEY 261 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 261 (519)
-.++.|.|.+|+||||||..+....... =..++|++....++... +..++.......-....+.+++...+...
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~~----a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPVY----ARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHH----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHHH----HHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 4588889999999999998876632211 23678999887766432 23333211000001123556666677666
Q ss_pred hcC-CcEEEEecccc
Q 038733 262 LMT-KRYLIVLDDVW 275 (519)
Q Consensus 262 L~~-kr~LlVLDDv~ 275 (519)
++. .--+||+|.+-
T Consensus 148 ~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVA 162 (366)
T ss_dssp HTTTCCSEEEEECTT
T ss_pred HhcCCCCEEEEeChH
Confidence 643 34589999874
No 102
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.76 E-value=0.013 Score=51.17 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-..+.|+|..|+|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999984
No 103
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.76 E-value=0.023 Score=54.88 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=35.3
Q ss_pred CCCCccccchhHHHHHHHHHhc--C-------C-CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 156 SKNRNMVGLDDRMEELLDLLIE--G-------P-TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 156 ~~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-.+++|.+..++++.++... . + .-.+-+.|+|+.|+||||||+.+.+.
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 3445789988877777665432 1 0 00112889999999999999999984
No 104
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.76 E-value=0.015 Score=52.96 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999999873
No 105
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.76 E-value=0.067 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.6
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+++++|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999888763
No 106
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.75 E-value=0.018 Score=57.03 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=36.1
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..++|.+..++.+...+..+. -+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 368999999999988887642 577899999999999999988
No 107
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.74 E-value=0.14 Score=50.30 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=31.5
Q ss_pred cchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 163 GLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 163 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
|-++.++.|.+.+..+. .+.+-++|+.|+||||+|+.+.+.
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHh
Confidence 34556677777777655 678899999999999999999773
No 108
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.70 E-value=0.14 Score=52.81 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcC-------CCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 167 RMEELLDLLIEG-------PTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 167 ~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++.++|... ....++|.++|.+|+||||++..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566666432 13468999999999999999887765
No 109
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.68 E-value=0.017 Score=51.89 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 110
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.66 E-value=0.019 Score=51.07 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+|+|+|+.|+||||+++.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999887
No 111
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.60 E-value=0.035 Score=55.54 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=32.2
Q ss_pred ccchhHHHHHHHHHhcC--CCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 162 VGLDDRMEELLDLLIEG--PTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 162 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
|..+.-.+++++.+... ......|.|+|+.|+||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 44556667777776432 33466799999999999999998877
No 112
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.60 E-value=0.018 Score=52.66 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|+|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999987
No 113
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.58 E-value=0.02 Score=51.65 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=20.3
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 114
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.55 E-value=0.018 Score=51.73 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=20.4
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 115
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.53 E-value=0.034 Score=58.58 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=36.5
Q ss_pred CccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|.+..++.+...+..+. -+-++|++|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 358999999998888877643 6778999999999999999984
No 116
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.50 E-value=0.015 Score=53.14 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 117
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.48 E-value=0.019 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997553
No 118
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.48 E-value=0.02 Score=51.98 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.8
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999988
No 119
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.48 E-value=0.02 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.5
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 120
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.45 E-value=0.02 Score=52.24 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999873
No 121
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.42 E-value=0.017 Score=52.20 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999873
No 122
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.42 E-value=0.021 Score=53.01 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.6
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999977
No 123
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.41 E-value=0.078 Score=48.97 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=36.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCcc---C-CCcEEEEEEcCCCCCHHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVK---H-YFDYLAWIPSPYHYDADQILDIVTVI 236 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~---~-~F~~~~wv~vs~~~~~~~l~~il~~l 236 (519)
-.+++|+|..|+|||||++.+....... . .-...+|+.-...+....+..+....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~ 83 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR 83 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5699999999999999999997632211 1 13457788766555555544455444
No 124
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.41 E-value=0.021 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|+|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 125
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.39 E-value=0.022 Score=51.33 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 126
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.31 E-value=0.038 Score=55.80 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=35.6
Q ss_pred CccccchhHHHHHHHHHhc----------------------------CCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIE----------------------------GPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|.+..++.|...+.. .......+.++|++|+|||++|+.+.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3578999888888877721 0112346789999999999999999983
No 127
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.31 E-value=0.025 Score=52.14 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999999999883
No 128
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.31 E-value=0.024 Score=51.05 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 129
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.29 E-value=0.024 Score=51.95 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=21.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999887
No 130
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.29 E-value=1.1 Score=46.15 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.1
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 368999999999999999877765
No 131
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.27 E-value=0.024 Score=49.98 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=20.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 132
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.24 E-value=0.022 Score=52.03 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=20.3
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 133
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.22 E-value=0.026 Score=53.87 Aligned_cols=23 Identities=13% Similarity=-0.052 Sum_probs=20.7
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999873
No 134
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.20 E-value=0.02 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.++|.|+|+.|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 135
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.19 E-value=0.021 Score=52.32 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 136
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.19 E-value=0.027 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.3
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 137
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.18 E-value=0.021 Score=52.44 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=21.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|.|+|+.|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999873
No 138
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.16 E-value=0.028 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.068 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 139
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.15 E-value=0.028 Score=51.10 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=22.3
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999988
No 140
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.14 E-value=0.046 Score=54.11 Aligned_cols=79 Identities=9% Similarity=-0.011 Sum_probs=43.7
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCC-CCHHHHHH--HHHHhcCCCCCCcCCCCCCHHHHHH
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYH-YDADQILD--IVTVILLPFSMLSKIKDKDYEMKKI 256 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~-~~~~~l~~--il~~l~~~~~~~~~~~~~~~~~l~~ 256 (519)
....+|+|.|..|+|||||++.+..-......-..+..+....- .....+-. +.... + .....+.+.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~----g---~P~~~D~~~l~~ 162 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRK----G---FPESYDMPSLLR 162 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGT----T---SGGGBCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhc----c---CcccccHHHHHH
Confidence 45679999999999999999998763111000112344444332 22222211 11111 1 123457777777
Q ss_pred HHHHHhcCC
Q 038733 257 ILGEYLMTK 265 (519)
Q Consensus 257 ~l~~~L~~k 265 (519)
.+.....++
T Consensus 163 ~L~~L~~g~ 171 (321)
T 3tqc_A 163 VLNAIKSGQ 171 (321)
T ss_dssp HHHHHHTTC
T ss_pred HHHhhhccc
Confidence 777776666
No 141
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.11 E-value=0.022 Score=50.70 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 142
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.07 E-value=0.047 Score=50.50 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+.+...+... ....|.|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 44444444333 4789999999999999999888774
No 143
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.06 E-value=0.033 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|.|.|+.|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999987
No 144
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.05 E-value=0.23 Score=49.14 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 165 DDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 165 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++..+.+.+.+..+. -...+-++|+.|+||||+|+.+.+.
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHH
Confidence 455666777666543 3457889999999999999988774
No 145
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.03 E-value=0.032 Score=50.21 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=22.1
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+|.|+|+.|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999873
No 146
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.02 E-value=0.031 Score=50.02 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.+.|+.|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 147
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.96 E-value=0.033 Score=50.18 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...|.|+|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 148
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.95 E-value=0.056 Score=52.57 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcC---CCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 167 RMEELLDLLIEG---PTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 167 ~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+++++.-+... .....+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444332 23467899999999999999999987
No 149
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.95 E-value=0.029 Score=51.56 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 459999999999999999999874
No 150
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.94 E-value=0.029 Score=50.62 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 151
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.92 E-value=0.023 Score=50.94 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 152
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.91 E-value=0.049 Score=51.51 Aligned_cols=38 Identities=11% Similarity=-0.097 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 167 RMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+.++............+|.|.|+.|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33444433333223467899999999999999999976
No 153
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.90 E-value=0.035 Score=54.82 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=22.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+|+|+|..|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4679999999999999999998873
No 154
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.90 E-value=0.03 Score=52.94 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999985
No 155
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.89 E-value=0.034 Score=50.78 Aligned_cols=24 Identities=13% Similarity=-0.056 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 156
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.88 E-value=0.027 Score=49.81 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=20.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 157
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.86 E-value=0.031 Score=55.48 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=33.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|.+..++.+...+.... ..-+-|+|.+|+|||+||+.+.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 3468999886666544443222 223889999999999999999884
No 158
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.85 E-value=0.044 Score=50.50 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=30.0
Q ss_pred cchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 163 GLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 163 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+.++..+.+.+.+... ...+|.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444555555555433 4789999999999999999888774
No 159
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.84 E-value=0.035 Score=52.76 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999877
No 160
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.78 E-value=0.037 Score=52.95 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 161
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.75 E-value=0.039 Score=52.17 Aligned_cols=23 Identities=4% Similarity=0.104 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|+|.|..|.|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999876
No 162
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.74 E-value=0.037 Score=48.67 Aligned_cols=21 Identities=5% Similarity=-0.100 Sum_probs=19.7
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 163
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.74 E-value=0.03 Score=50.62 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 164
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.72 E-value=0.051 Score=51.72 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhcC---CCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 165 DDRMEELLDLLIEG---PTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 165 ~~~~~~l~~~L~~~---~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+...+.++..+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33445555544433 23467899999999999999999987
No 165
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.71 E-value=0.034 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 166
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.70 E-value=0.028 Score=52.27 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|+.|+|||||++.+..-
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999873
No 167
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.67 E-value=0.036 Score=49.80 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=19.8
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 168
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.64 E-value=0.23 Score=51.85 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=29.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDA 226 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~ 226 (519)
...+++|+|..|+|||||++.+..-... -...+++.-...+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~---~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFRA 334 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEECCCTTCH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh---cCCeEEEecCcccch
Confidence 4579999999999999999998873221 123455544444543
No 169
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.62 E-value=0.038 Score=50.66 Aligned_cols=25 Identities=4% Similarity=0.130 Sum_probs=22.1
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999999873
No 170
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.59 E-value=0.029 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=17.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 171
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.58 E-value=0.04 Score=49.14 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=21.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999887
No 172
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.56 E-value=0.038 Score=52.65 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999986
No 173
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.55 E-value=0.04 Score=50.22 Aligned_cols=23 Identities=13% Similarity=-0.010 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|.|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 174
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.55 E-value=0.044 Score=48.30 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++++|..|.|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 569999999999999999999873
No 175
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.53 E-value=0.026 Score=51.29 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=19.7
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999887
No 176
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.47 E-value=0.045 Score=49.94 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=22.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999887
No 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.46 E-value=0.077 Score=53.23 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554444688999999999999999988765
No 178
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.44 E-value=0.073 Score=49.16 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|+|+.|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999864
No 179
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.42 E-value=0.066 Score=52.63 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhcCCC-cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 165 DDRMEELLDLLIEGPT-QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 165 ~~~~~~l~~~L~~~~~-~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
....+.+.+++...+. ....+.++|..|+|||+||+.+++.
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445556667765322 2467889999999999999999984
No 180
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.35 E-value=0.049 Score=48.57 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+|.|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 181
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.32 E-value=0.045 Score=49.36 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=20.1
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 182
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.30 E-value=0.18 Score=49.52 Aligned_cols=90 Identities=7% Similarity=0.005 Sum_probs=51.9
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHH-HHHHHHH-
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMK-KIILGEY- 261 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l-~~~l~~~- 261 (519)
++-|.|.+|+|||||+..+......+..=..++|++....++... ++.++.....---....+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r----a~~lGvd~d~llv~~~~~~E~~~l~i~~~l~ 105 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY----LRSMGVDPERVIHTPVQSLEQLRIDMVNQLD 105 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH----HHHTTCCGGGEEEEECSBHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH----HHHhCCCHHHeEEEcCCCHHHHHHHHHHHHH
Confidence 789999999999999877665322110123678999888877543 4444432110000112244554 3333222
Q ss_pred -h-cCCcEEEEecccccC
Q 038733 262 -L-MTKRYLIVLDDVWST 277 (519)
Q Consensus 262 -L-~~kr~LlVLDDv~~~ 277 (519)
+ +++--|+|+|-|-..
T Consensus 106 ~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 106 AIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp TCCTTCCEEEEEECSTTC
T ss_pred HhhccCceEEEEeccccc
Confidence 3 346779999998543
No 183
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.25 E-value=0.045 Score=51.01 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=21.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 569999999999999999999884
No 184
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.21 E-value=0.075 Score=50.07 Aligned_cols=34 Identities=15% Similarity=-0.018 Sum_probs=26.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|+.|.|||||.+.+..- .......+++
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~I~~ 64 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL---DKPTEGEVYI 64 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC---CCCCceEEEE
Confidence 458999999999999999999872 2233455555
No 185
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.19 E-value=0.16 Score=52.77 Aligned_cols=93 Identities=11% Similarity=0.145 Sum_probs=56.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC-HHHHHH-HHHHhcCC-------CC-CCcCCCC---
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD-ADQILD-IVTVILLP-------FS-MLSKIKD--- 248 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~-il~~l~~~-------~~-~~~~~~~--- 248 (519)
-.-++|.|..|+|||+|++.+.+.. .+.+-+.++++-+++..+ ..++.. +...-... .. .--...+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 4578999999999999999888741 223457888888887654 445555 55431111 00 0000001
Q ss_pred ---CCHHHHHHHHHHHhc---CCcEEEEecccc
Q 038733 249 ---KDYEMKKIILGEYLM---TKRYLIVLDDVW 275 (519)
Q Consensus 249 ---~~~~~l~~~l~~~L~---~kr~LlVLDDv~ 275 (519)
.-.....-.+.++++ ++.+||++||+.
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 112233444566664 589999999984
No 186
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.16 E-value=0.049 Score=49.49 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999988
No 187
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.15 E-value=0.089 Score=49.74 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999988
No 188
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.14 E-value=0.042 Score=50.25 Aligned_cols=24 Identities=4% Similarity=-0.175 Sum_probs=21.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|.|.|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 189
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.14 E-value=0.16 Score=51.35 Aligned_cols=101 Identities=14% Similarity=0.034 Sum_probs=52.2
Q ss_pred HHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCc-cCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCC
Q 038733 170 ELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYV-KHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKD 248 (519)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v-~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~ 248 (519)
++++.+..-. .-..++|+|..|+|||||++.+.+.... ...+.+ +++-+++. ..++..+.+.+...- -....+
T Consensus 163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER--~~Ev~~~~~~~~~~v--V~atad 236 (422)
T 3ice_A 163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDER--PEEVTEMQRLVKGEV--VASTFD 236 (422)
T ss_dssp HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSC--HHHHHHHHTTCSSEE--EEECTT
T ss_pred eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCC--hHHHHHHHHHhCeEE--EEeCCC
Confidence 4455554322 2458999999999999999988763111 123333 35666654 333333333332100 000011
Q ss_pred CCHH------HHHHHHHHHh--cCCcEEEEeccccc
Q 038733 249 KDYE------MKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 249 ~~~~------~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.... ...-.+.+++ +++.+||++||+..
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 1111 1111223333 58999999999843
No 190
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.11 E-value=0.047 Score=49.98 Aligned_cols=23 Identities=4% Similarity=-0.006 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 191
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.10 E-value=0.054 Score=49.84 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.|.|+.|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999877
No 192
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.09 E-value=0.06 Score=49.68 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 193
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.09 E-value=0.048 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999998873
No 194
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.07 E-value=0.4 Score=49.30 Aligned_cols=25 Identities=12% Similarity=-0.008 Sum_probs=21.7
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999998887753
No 195
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.05 E-value=0.1 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988876
No 196
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.04 E-value=0.045 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.0
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998874
No 197
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.02 E-value=0.051 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=22.1
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+++|+|++|+|||||++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3569999999999999999998873
No 198
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.01 E-value=0.033 Score=52.16 Aligned_cols=87 Identities=9% Similarity=-0.069 Sum_probs=46.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHHhcCCCCCCcCCCCCCHHHHHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTVILLPFSMLSKIKDKDYEMKKIILGE 260 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 260 (519)
-.++.|.|..|.||||++..+.+.... .... ++.+.... +.. ... |++.++.... ........++...+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~-~g~k-Vli~~~~~--d~r-~~~~i~srlG~~~~---~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY-ADVK-YLVFKPKI--DTR-SIRNIQSRTGTSLP---SVEVESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-TTCC-EEEEEECC--CGG-GCSSCCCCCCCSSC---CEEESSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh-cCCE-EEEEEecc--Cch-HHHHHHHhcCCCcc---ccccCCHHHHHHHHHH
Confidence 568889999999999988666653211 1222 23332222 112 222 4444433211 1111234556666666
Q ss_pred HhcCCcE-EEEeccccc
Q 038733 261 YLMTKRY-LIVLDDVWS 276 (519)
Q Consensus 261 ~L~~kr~-LlVLDDv~~ 276 (519)
.+.+.++ +||+|.+..
T Consensus 84 ~~~~~~~dvViIDEaQ~ 100 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQF 100 (223)
T ss_dssp TTSCTTCCEEEECSGGG
T ss_pred HhhCCCCCEEEEecCcc
Confidence 5555555 999998743
No 199
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.98 E-value=0.12 Score=53.53 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=28.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCC
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHY 224 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~ 224 (519)
..++|+|..|+|||||++.+.++.... +-+.++++.+++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGert 192 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERT 192 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCc
Confidence 368899999999999999888743222 22445666666543
No 200
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.97 E-value=0.14 Score=55.26 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=37.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 158 NRNMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-..++|.+..++.+...+..+ ..+.|+|+.|+||||||+.+..-
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 356899988888888777754 38899999999999999999983
No 201
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.97 E-value=0.022 Score=52.27 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|+|.|+.|+||||+++.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999876
No 202
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.96 E-value=0.056 Score=50.01 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 203
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.94 E-value=0.057 Score=53.29 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+.+||+|.|=|||||||.+..+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 589999999999999997765544
No 204
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.92 E-value=0.093 Score=54.21 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=36.2
Q ss_pred CccccchhHHHHHHHHHhcC------------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEG------------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|.++.++.+...+... ....+-|.++|++|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999888887776321 112456889999999999999999983
No 205
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.92 E-value=0.087 Score=50.49 Aligned_cols=34 Identities=18% Similarity=0.031 Sum_probs=26.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|+.|.|||||.+.+..- .......+++
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl---~~p~~G~i~~ 65 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL---EKPSEGAIIV 65 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC---CCCCCcEEEE
Confidence 458999999999999999999872 2233455555
No 206
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.91 E-value=0.035 Score=51.89 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=16.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHH-h
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAY-N 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~-~ 204 (519)
-.+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 6
No 207
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.91 E-value=0.087 Score=50.91 Aligned_cols=34 Identities=15% Similarity=0.005 Sum_probs=25.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|+.|.|||||.+.+.. ........+++
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G---l~~p~~G~I~~ 67 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG---ILKPSSGRILF 67 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT---SSCCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHc---CCCCCCeEEEE
Confidence 45899999999999999999987 22334455554
No 208
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.89 E-value=0.068 Score=49.73 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=23.2
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+||.|.|++|+||||.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999873
No 209
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.88 E-value=0.056 Score=49.70 Aligned_cols=21 Identities=10% Similarity=0.048 Sum_probs=19.2
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 210
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.85 E-value=0.082 Score=49.38 Aligned_cols=34 Identities=12% Similarity=-0.067 Sum_probs=25.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|+.|.|||||.+.+..- .......+++
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 63 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL---DAPTEGKVFL 63 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC---CCCCceEEEE
Confidence 358999999999999999999872 2233445554
No 211
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.83 E-value=0.05 Score=50.65 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 212
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.76 E-value=0.059 Score=52.23 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.6
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999874
No 213
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.72 E-value=0.062 Score=48.91 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=20.1
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999977
No 214
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.67 E-value=0.063 Score=49.44 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=19.2
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 215
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.67 E-value=0.18 Score=52.31 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=41.2
Q ss_pred HHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCC-HHHHHH-HHHH
Q 038733 170 ELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYD-ADQILD-IVTV 235 (519)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~-~~~l~~-il~~ 235 (519)
+.++.|..-. .-.-++|.|..|+|||+|++.+.+.. .+.+-+.++++-+++... ..++.+ +...
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3455554311 24578999999999999999988742 233446778888876543 345555 5543
No 216
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.66 E-value=0.063 Score=52.74 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=22.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.66 E-value=0.087 Score=58.51 Aligned_cols=47 Identities=13% Similarity=0.204 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHHHHhcCC-------CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEGP-------TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|.+..++.+...+.... .....+-++|++|+|||++|+.+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999988886421 12347899999999999999999884
No 218
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.65 E-value=0.03 Score=50.12 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998773
No 219
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.65 E-value=0.071 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+++|+|+.|+||||+++.+..-
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 579999999999999999998873
No 220
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.63 E-value=0.05 Score=51.82 Aligned_cols=23 Identities=13% Similarity=-0.012 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+|.|+|+.|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 221
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.59 E-value=0.28 Score=50.38 Aligned_cols=24 Identities=17% Similarity=-0.051 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|.++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999888773
No 222
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.54 E-value=0.058 Score=50.89 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 223
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.52 E-value=0.07 Score=47.81 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.++++|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 678999999999999999998873
No 224
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.51 E-value=0.11 Score=49.14 Aligned_cols=34 Identities=12% Similarity=-0.077 Sum_probs=25.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|+.|.|||||.+.+..- .......+++
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl---~~p~~G~i~~ 65 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL---VRAQKGKIIF 65 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 458999999999999999999872 2223445554
No 225
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.49 E-value=0.11 Score=49.38 Aligned_cols=34 Identities=18% Similarity=-0.029 Sum_probs=25.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|..|.|||||.+.+..- .......+++
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl---~~p~~G~I~i 68 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF---YIPENGQVLI 68 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC---CCCCCcEEEE
Confidence 458999999999999999999882 2233455555
No 226
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.44 E-value=0.11 Score=49.82 Aligned_cols=34 Identities=18% Similarity=0.016 Sum_probs=25.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|+.|.|||||.+.+..- . ......+++
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl--~-~p~~G~I~~ 83 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL--E-DFDEGEIII 83 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS--S-CCSEEEEEE
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC--C-CCCCcEEEE
Confidence 468999999999999999999872 2 223445554
No 227
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.44 E-value=0.055 Score=50.17 Aligned_cols=23 Identities=13% Similarity=-0.123 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 228
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.38 E-value=0.11 Score=49.51 Aligned_cols=34 Identities=9% Similarity=-0.110 Sum_probs=26.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|+.|.|||||.+.+..- .......+++
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl---~~p~~G~I~~ 74 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL---IKPSSGIVTV 74 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC---CCCCceEEEE
Confidence 458999999999999999999872 2233455554
No 229
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.37 E-value=0.07 Score=50.78 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|..|.|||||.+.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999998
No 230
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.35 E-value=0.093 Score=55.90 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHHHHhc----CCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIE----GPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|.++.++.+.+.+.- ......++.++|++|+||||||+.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578888888777655432 1224568999999999999999999883
No 231
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.35 E-value=0.1 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|.|||||.+.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 232
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.32 E-value=0.075 Score=52.88 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+|+|.|+.|+||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998873
No 233
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.32 E-value=0.11 Score=49.95 Aligned_cols=34 Identities=18% Similarity=-0.007 Sum_probs=25.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|..|.|||||.+.+..- . ......+++
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl--~-~p~~G~I~~ 78 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL--Y-QPTGGKVLL 78 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS--S-CCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC--C-CCCCCEEEE
Confidence 468999999999999999999882 2 223455554
No 234
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.29 E-value=0.071 Score=50.47 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 235
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.26 E-value=0.066 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 236
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.24 E-value=0.075 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|..|.|||||.+.+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999998
No 237
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.21 E-value=0.069 Score=50.06 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|+.|.|||||.+.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 238
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.20 E-value=0.35 Score=48.80 Aligned_cols=54 Identities=15% Similarity=-0.099 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhccCcc-CCCcEEEEEEcCCC
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVK-HYFDYLAWIPSPYH 223 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~-~~F~~~~wv~vs~~ 223 (519)
--++++.+..-. .-.-++|+|..|+|||+|++.+.+..... ..+.+ +++-+++.
T Consensus 162 GiraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 162 STRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred cchhhhhccccc-CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 345666665422 24578999999999999999888742211 22333 45666653
No 239
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.16 E-value=0.073 Score=51.18 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999988
No 240
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.13 E-value=0.12 Score=47.64 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 166 DRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-+..+..++..-+ .-.-+.|+|++|+||||+|..+.+.
T Consensus 43 ~f~~~l~~~~~~iP-kkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 43 TFLGALKSFLKGTP-KKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHHTCT-TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-cccEEEEECCCCCCHHHHHHHHHHH
Confidence 34666667776433 2346899999999999999998884
No 241
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.09 E-value=0.13 Score=49.46 Aligned_cols=34 Identities=6% Similarity=-0.124 Sum_probs=25.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|..|.|||||.+.+..- .......+++
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl---~~p~~G~I~~ 66 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL---IEPTSGDVLY 66 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS---SCCSEEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC---CCCCCcEEEE
Confidence 458999999999999999999872 2233445554
No 242
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.09 E-value=0.14 Score=51.89 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 169 EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+++-+.-.-..-.+++|+|+.|.|||||++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 334444433323456999999999999999999987
No 243
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.05 E-value=0.085 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 244
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.95 E-value=0.087 Score=48.96 Aligned_cols=21 Identities=14% Similarity=-0.043 Sum_probs=19.4
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 245
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.94 E-value=0.12 Score=45.15 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=20.6
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998874
No 246
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.91 E-value=0.076 Score=50.84 Aligned_cols=33 Identities=15% Similarity=0.029 Sum_probs=25.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEE
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWI 218 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv 218 (519)
-.+++|+|..|.|||||.+.+..- .. . ...+++
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl--~~-~-~G~I~i 78 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF--YD-A-EGDIKI 78 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS--SC-C-EEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc--CC-C-CeEEEE
Confidence 458999999999999999999883 32 2 455554
No 247
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.88 E-value=0.095 Score=50.21 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 56999999999999999999876
No 248
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.84 E-value=0.099 Score=52.53 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+++|+|..|+||||+++.+..-
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 579999999999999999998873
No 249
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.83 E-value=0.084 Score=47.56 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999999875
No 250
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.82 E-value=0.1 Score=51.22 Aligned_cols=25 Identities=16% Similarity=0.043 Sum_probs=22.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+|+|+|.+|+||||++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3679999999999999999888763
No 251
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.81 E-value=0.081 Score=50.31 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|.|||||.+.+..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999988
No 252
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.81 E-value=0.12 Score=44.52 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.5
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+-|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998875
No 253
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.73 E-value=0.083 Score=51.17 Aligned_cols=23 Identities=13% Similarity=-0.123 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|..|.|||||.+.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999988
No 254
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.71 E-value=0.099 Score=50.79 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=20.4
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.69 E-value=0.092 Score=48.46 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=29.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
-.+++|+|..|+|||||++.+........ ..++|+... ....++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~--~~~~~~~~ 68 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTE--ESRDSIIR 68 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESS--SCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEcc--cCHHHHHH
Confidence 46899999999999999999885321111 235565543 34455555
No 256
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.67 E-value=0.092 Score=47.50 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 257
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.66 E-value=0.088 Score=48.65 Aligned_cols=22 Identities=9% Similarity=-0.082 Sum_probs=20.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 258
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.65 E-value=0.085 Score=50.29 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 259
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.64 E-value=0.11 Score=48.66 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|.|.|+.|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999873
No 260
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.62 E-value=0.083 Score=47.13 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.6
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 261
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.61 E-value=0.088 Score=48.45 Aligned_cols=21 Identities=5% Similarity=-0.151 Sum_probs=19.3
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 262
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.60 E-value=0.1 Score=51.51 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=20.6
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 263
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.59 E-value=0.21 Score=55.42 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcC-------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 159 RNMVGLDDRMEELLDLLIEG-------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999998888877531 122457889999999999999999883
No 264
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.56 E-value=0.075 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=22.3
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999998873
No 265
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.53 E-value=0.11 Score=48.70 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=21.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|+|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999887
No 266
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.48 E-value=0.064 Score=52.26 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=18.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|+|.|..|+||||+|+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 267
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.45 E-value=0.16 Score=49.65 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+++++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999888763
No 268
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.45 E-value=0.1 Score=51.24 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=21.7
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 356899999999999999999987
No 269
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.42 E-value=0.11 Score=51.60 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.++|.|+|+.|+||||||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 270
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.36 E-value=0.12 Score=49.00 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=21.6
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...++.+.|.||+||||++..+...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4678889999999999999998753
No 271
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.32 E-value=0.12 Score=50.85 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.++|.|+|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 272
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.32 E-value=0.13 Score=44.25 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=19.8
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 273
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.30 E-value=0.098 Score=53.60 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=22.1
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 274
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.19 E-value=0.19 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.3
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999884
No 275
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.14 E-value=0.12 Score=44.65 Aligned_cols=24 Identities=4% Similarity=-0.000 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998875
No 276
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.09 E-value=0.1 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 277
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.07 E-value=0.14 Score=52.93 Aligned_cols=37 Identities=30% Similarity=0.291 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCC-------CcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 168 MEELLDLLIEGP-------TQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 168 ~~~l~~~L~~~~-------~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.++|.+++.... ....+|.|+|.+|+||||++..+..
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445556554321 2356999999999999999988776
No 278
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.04 E-value=0.16 Score=43.78 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.-|.++|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999988753
No 279
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.02 E-value=0.15 Score=45.32 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
--|.++|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998753
No 280
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.00 E-value=0.13 Score=45.80 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=22.3
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
....-|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34667899999999999999998764
No 281
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.99 E-value=0.11 Score=49.83 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=20.7
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 282
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.97 E-value=0.14 Score=45.35 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|+++|.+|+|||||...+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 283
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.95 E-value=0.2 Score=43.84 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.8
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998774
No 284
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.94 E-value=0.17 Score=43.82 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999998875
No 285
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.91 E-value=0.16 Score=43.80 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.8
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-|.|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998875
No 286
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.90 E-value=0.13 Score=53.11 Aligned_cols=91 Identities=13% Similarity=0.196 Sum_probs=50.6
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCccCCCc----EEEEEEcCCCCC-HHHHHH-HHHHhcCCCC-CCcCCCCCCH-----
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVKHYFD----YLAWIPSPYHYD-ADQILD-IVTVILLPFS-MLSKIKDKDY----- 251 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~----~~~wv~vs~~~~-~~~l~~-il~~l~~~~~-~~~~~~~~~~----- 251 (519)
-++|.|..|+|||||+..+.+.... +-+ .++++-+++..+ ..++.+ +...-..... .--...+...
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 4688999999999999999985433 223 566777775433 334444 4332100000 0000011111
Q ss_pred -HHHHHHHHHHhc---CCcEEEEeccccc
Q 038733 252 -EMKKIILGEYLM---TKRYLIVLDDVWS 276 (519)
Q Consensus 252 -~~l~~~l~~~L~---~kr~LlVLDDv~~ 276 (519)
....-.+.++++ ++.+||++||+-.
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 112234556654 6899999999853
No 287
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.84 E-value=0.15 Score=46.54 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=29.2
Q ss_pred EEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
.|+|=|..|+||||.++.+.+ ..+..--.+++..-+......+..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir 47 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIR 47 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHH
Confidence 477889999999999999988 3433322344554444433444444
No 288
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.71 E-value=0.14 Score=47.16 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=19.4
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+|.|.|++|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999987
No 289
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.70 E-value=0.13 Score=44.88 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999998764
No 290
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.67 E-value=0.14 Score=45.68 Aligned_cols=25 Identities=12% Similarity=0.003 Sum_probs=21.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
....|.|+|.+|+|||||...+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3557899999999999999998875
No 291
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.67 E-value=0.18 Score=43.31 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988765
No 292
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.64 E-value=0.15 Score=50.01 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.++|.|+|+.|+||||||..+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 57899999999999999999987
No 293
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.60 E-value=0.22 Score=55.33 Aligned_cols=51 Identities=25% Similarity=0.266 Sum_probs=37.9
Q ss_pred CCCCCCccccchhHHHHHHHHHhcC---C--------CcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEG---P--------TQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~---~--------~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+...-.++.|.++.+++|.+.+.-. + ...+-+-++|++|.|||.||+++.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH
Confidence 3444567888988888887765431 1 1234567899999999999999999
No 294
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.60 E-value=0.15 Score=49.82 Aligned_cols=24 Identities=17% Similarity=-0.051 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+++|+|.+|+||||++..+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999988774
No 295
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.59 E-value=0.45 Score=57.74 Aligned_cols=89 Identities=17% Similarity=0.011 Sum_probs=54.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGE 260 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 260 (519)
.-+++-|+|++|+|||+||.++..... ..=..++|+.+...++... ++.++.....-.-......++....++.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~----a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY----ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH----HHHcCCCchhceeecCChHHHHHHHHHH
Confidence 367999999999999999988877422 2223567888887777655 2333311100000011233455666665
Q ss_pred Hhc-CCcEEEEecccc
Q 038733 261 YLM-TKRYLIVLDDVW 275 (519)
Q Consensus 261 ~L~-~kr~LlVLDDv~ 275 (519)
..+ .+--+||+|.+.
T Consensus 1500 lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHTCCSEEEESCGG
T ss_pred HHhcCCCCEEEEcChh
Confidence 543 456699999994
No 296
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.57 E-value=0.24 Score=49.27 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 170 ELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 170 ~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+++-+.-.-....+++|+|..|+|||||.+.+..
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444433333578999999999999999999875
No 297
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.47 E-value=0.15 Score=44.26 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998874
No 298
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.41 E-value=0.16 Score=44.00 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
--|.|+|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999988753
No 299
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.41 E-value=0.091 Score=51.59 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 56899999999999999999987
No 300
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.39 E-value=0.22 Score=49.91 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||.+.+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999987
No 301
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.39 E-value=0.19 Score=43.38 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=20.0
Q ss_pred EEEeeCCCCCCHHHHHHHHHhcc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
-|.++|..|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988753
No 302
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.39 E-value=0.19 Score=44.35 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998754
No 303
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.38 E-value=0.14 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=22.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998873
No 304
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.36 E-value=0.12 Score=49.72 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.++.|+|.+|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46999999999999999988875
No 305
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.34 E-value=0.15 Score=45.50 Aligned_cols=24 Identities=13% Similarity=-0.198 Sum_probs=20.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 446789999999999999887763
No 306
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.32 E-value=0.24 Score=52.07 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=20.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..++|+|+|.+|+||||++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988874
No 307
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.31 E-value=0.13 Score=49.89 Aligned_cols=51 Identities=8% Similarity=0.105 Sum_probs=33.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCc-EEEEEEcCCCCCHHHHHH-HHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFD-YLAWIPSPYHYDADQILD-IVTVI 236 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~-~~~wv~vs~~~~~~~l~~-il~~l 236 (519)
-.+++|+|.+|+|||||++.+....... -. .++|+... ....++.. ++...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e--~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE--ESVEETAEDLIGLH 87 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc--CCHHHHHHHHHHHH
Confidence 4599999999999999999887742222 12 35565543 34455555 54443
No 308
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.26 E-value=0.16 Score=47.69 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999999883
No 309
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.25 E-value=0.17 Score=49.41 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.1
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..++|+|+|-||+||||+|..+..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHH
Confidence 578999999999999999977665
No 310
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.25 E-value=0.34 Score=48.74 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=22.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+.++|+|+|.+|+|||||.+.+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999999875
No 311
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.22 E-value=0.2 Score=44.17 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998875
No 312
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.19 E-value=0.2 Score=43.82 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3557889999999999999988775
No 313
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.17 E-value=0.64 Score=45.58 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=35.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTV 235 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~ 235 (519)
-.++.|.|.+|+||||||..+..+...+. ..++|++.- .+..++.. ++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 56889999999999999988776432222 467777654 45667666 6554
No 314
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.17 E-value=0.15 Score=45.38 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+.+|+|..|.|||||+.+++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999875
No 315
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.14 E-value=0.16 Score=51.14 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|.|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999999987
No 316
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.12 E-value=0.13 Score=50.18 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999999873
No 317
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.11 E-value=0.15 Score=44.16 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=19.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
--|.|+|.+|+|||||...+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998864
No 318
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.10 E-value=0.28 Score=55.26 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=37.0
Q ss_pred ccccchhHHHHHHHHHhcC-------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 160 NMVGLDDRMEELLDLLIEG-------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.++|.+..++.+...+... ......+.|+|+.|+|||++|+.+.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999988877542 112458889999999999999999883
No 319
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.10 E-value=0.3 Score=46.74 Aligned_cols=38 Identities=8% Similarity=-0.026 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-+..||....+...-|.++|++|.|||++|.++.+.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34466666654333456999999999999999999883
No 320
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.07 E-value=0.14 Score=50.42 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.7
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999864
No 321
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.04 E-value=0.33 Score=50.38 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 164 LDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-...+..+...+...+ ..+.|.|.+|+||||++..+...
T Consensus 30 Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHH
Confidence 3344445555555433 38899999999999999888774
No 322
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.03 E-value=0.19 Score=44.00 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998875
No 323
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.00 E-value=0.29 Score=48.73 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=25.2
Q ss_pred HHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 171 LLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
+.+-+........+|+|+|.+|+|||||+..+..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3333333334578999999999999999998864
No 324
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.97 E-value=0.16 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||.+.+..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999987
No 325
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.91 E-value=0.18 Score=44.04 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998865
No 326
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.89 E-value=0.72 Score=45.76 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=34.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTV 235 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~ 235 (519)
-.++.|.|.+|+||||||..+..+..... ..++|++. .-+..++.. ++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEES--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC--CCCHHHHHHHHHHH
Confidence 45888999999999999988876432211 24556554 456677776 6554
No 327
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.89 E-value=0.15 Score=44.98 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=20.5
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 328
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.88 E-value=0.22 Score=43.47 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
...-|.|+|..|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35678899999999999999988753
No 329
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.87 E-value=0.32 Score=46.23 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 169 EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.++.+.+.........|+++|..|+|||||...+....
T Consensus 23 ~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444444444446678999999999999999998753
No 330
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.86 E-value=0.29 Score=49.30 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45899999999999999999986
No 331
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.84 E-value=0.19 Score=44.53 Aligned_cols=24 Identities=8% Similarity=-0.040 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999998875
No 332
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.84 E-value=0.18 Score=43.54 Aligned_cols=21 Identities=10% Similarity=-0.091 Sum_probs=19.0
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
|.++|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998764
No 333
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.83 E-value=0.23 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4467899999999999998887753
No 334
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.82 E-value=0.29 Score=49.34 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|+.|+|||||.+.+..-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 358999999999999999999873
No 335
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.81 E-value=0.19 Score=43.46 Aligned_cols=23 Identities=4% Similarity=0.013 Sum_probs=20.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
--|.|+|..|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998864
No 336
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.80 E-value=0.2 Score=44.07 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
..-|.|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578899999999999999988653
No 337
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.76 E-value=0.19 Score=43.94 Aligned_cols=24 Identities=13% Similarity=-0.058 Sum_probs=20.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 338
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.76 E-value=0.23 Score=44.25 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=20.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999877664
No 339
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.69 E-value=0.36 Score=49.52 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHh
Q 038733 163 GLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 163 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
|.......+++-+... .-.+++|+|+.|.|||||.+.+..
T Consensus 150 g~~~~~~~~L~~l~~~--~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKR--PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp CCCHHHHHHHHHHHTS--SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHh
Confidence 4443333344333332 356999999999999999999887
No 340
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.67 E-value=0.18 Score=50.70 Aligned_cols=23 Identities=22% Similarity=0.024 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 45899999999999999999987
No 341
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.66 E-value=0.18 Score=50.71 Aligned_cols=24 Identities=13% Similarity=0.028 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|+.|+|||||.+.+..-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 458999999999999999999873
No 342
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.64 E-value=0.18 Score=51.01 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 45899999999999999999987
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.63 E-value=0.17 Score=50.93 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 344
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.62 E-value=0.16 Score=44.50 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=21.7
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998765
No 345
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.61 E-value=0.24 Score=43.63 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
..-|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568899999999999999988753
No 346
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.61 E-value=0.34 Score=46.27 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 169 EELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 169 ~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.++...+.........|.++|.+|+|||||...+.+..
T Consensus 26 ~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 26 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444444346678899999999999999998753
No 347
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.59 E-value=0.2 Score=43.45 Aligned_cols=24 Identities=17% Similarity=-0.061 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999764
No 348
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.50 E-value=0.24 Score=43.54 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
--|.++|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988765
No 349
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.49 E-value=0.18 Score=43.64 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=20.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998875
No 350
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.49 E-value=0.23 Score=45.38 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=22.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
....|.|+|.+|+|||||...+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999988753
No 351
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.40 E-value=0.27 Score=43.79 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=22.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
..--|.|+|..|+|||||...+.++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35578999999999999999998754
No 352
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.40 E-value=0.16 Score=43.87 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=18.7
Q ss_pred EEEeeCCCCCCHHHHHHHHHh
Q 038733 184 VVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-|.++|.+|+|||||.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998865
No 353
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.39 E-value=0.24 Score=49.52 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||.+.+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999999987
No 354
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.39 E-value=0.25 Score=44.47 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
..-|.|+|.+|+|||||...+.+..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 5578899999999999999987653
No 355
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.28 E-value=0.28 Score=43.44 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|..|+|||||...+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 356
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.26 E-value=0.24 Score=49.56 Aligned_cols=24 Identities=17% Similarity=0.075 Sum_probs=21.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999876
No 357
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.24 E-value=0.41 Score=42.44 Aligned_cols=35 Identities=17% Similarity=0.034 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+.+ +... ...-|.|+|..|+|||||...+.+.
T Consensus 5 ~~~~~~-~~~~--~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNH--QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTT--SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCC--CccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 3332 3567889999999999999998864
No 358
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.24 E-value=0.22 Score=44.52 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 557899999999999999998875
No 359
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.23 E-value=0.26 Score=43.20 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|.+|+|||||...+.+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999998875
No 360
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.22 E-value=0.47 Score=43.76 Aligned_cols=24 Identities=13% Similarity=-0.021 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+|.|-|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999999873
No 361
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.16 E-value=0.14 Score=48.79 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.6
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
....|.|.|..|+||||+|+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999998877
No 362
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.16 E-value=0.32 Score=50.77 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=48.7
Q ss_pred ceEEEeeCCCCCCHHHHH-HHHHhccCccCCCc-EEEEEEcCCCCCHHHHHHHHHHhcCCC------------CCCcCCC
Q 038733 182 LSVVAIPDSIGLDKTIFT-AEAYNSSYVKHYFD-YLAWIPSPYHYDADQILDIVTVILLPF------------SMLSKIK 247 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA-~~v~~~~~v~~~F~-~~~wv~vs~~~~~~~l~~il~~l~~~~------------~~~~~~~ 247 (519)
-.-++|.|..|+|||+|| ..|.|.. . -+ .++++-+++..+ ++..+++.+.... ..|....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~--Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKAS--SVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHH--HHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCch--HHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 346789999999999995 6888843 2 45 356777776433 3333333333211 1111000
Q ss_pred CCCHHHHHHHHHHHh--cCCcEEEEecccc
Q 038733 248 DKDYEMKKIILGEYL--MTKRYLIVLDDVW 275 (519)
Q Consensus 248 ~~~~~~l~~~l~~~L--~~kr~LlVLDDv~ 275 (519)
.-.......+.+++ +++..||++||+.
T Consensus 237 -~~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 -YLAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp -THHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred -HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11122223333333 5899999999985
No 363
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.16 E-value=0.2 Score=47.64 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=19.3
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788899999999999987766
No 364
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.14 E-value=0.22 Score=43.72 Aligned_cols=23 Identities=9% Similarity=-0.068 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
--|.|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998875
No 365
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.10 E-value=0.32 Score=51.10 Aligned_cols=46 Identities=9% Similarity=0.114 Sum_probs=31.2
Q ss_pred ccccchhHHHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 160 NMVGLDDRMEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+.+.+..+.+.+......+...+|.+.|+.|+||||+|+.+...
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHH
Confidence 3444554444444433222234578999999999999999999884
No 366
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.06 E-value=0.28 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998875
No 367
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.05 E-value=0.19 Score=46.19 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=20.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999877
No 368
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.03 E-value=0.23 Score=44.81 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
...-|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35578999999999999999988753
No 369
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.99 E-value=0.5 Score=49.18 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=49.2
Q ss_pred ceEEEeeCCCCCCHHHHH-HHHHhccCccCCCcE-EEEEEcCCCCC-HHHHHH-HHHHhcCCCC-CCcCCCCCCH-HH--
Q 038733 182 LSVVAIPDSIGLDKTIFT-AEAYNSSYVKHYFDY-LAWIPSPYHYD-ADQILD-IVTVILLPFS-MLSKIKDKDY-EM-- 253 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA-~~v~~~~~v~~~F~~-~~wv~vs~~~~-~~~l~~-il~~l~~~~~-~~~~~~~~~~-~~-- 253 (519)
-.-++|.|..|+|||+|| ..|.|.. .-+. ++++-+++..+ ..++.+ +...-..... .-....+... ..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 346789999999999995 5788843 2453 46777776543 334444 4331111000 0000011111 11
Q ss_pred ---HHHHHHHHh--cCCcEEEEeccccc
Q 038733 254 ---KKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 254 ---l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
....+.+++ +++..||++||+..
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 122344444 57999999999853
No 370
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.98 E-value=0.2 Score=44.67 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667899999999999999998875
No 371
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.98 E-value=0.25 Score=43.63 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|.|+|.+|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999988753
No 372
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=88.96 E-value=0.2 Score=44.87 Aligned_cols=23 Identities=13% Similarity=-0.062 Sum_probs=20.4
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-|+++|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998874
No 373
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.92 E-value=1.6 Score=45.60 Aligned_cols=52 Identities=6% Similarity=0.026 Sum_probs=34.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHHH
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVTV 235 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~~ 235 (519)
.-.++.|.|.+|+||||||..+..+...+.. ..++|++. .-+..++.. ++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~--E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAML--EESVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEES--SSCHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEec--cCCHHHHHHHHHHH
Confidence 3568889999999999999887764322211 24667665 335667776 6543
No 374
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.92 E-value=0.25 Score=45.19 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-+.|.|.|..|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999877
No 375
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.92 E-value=0.21 Score=50.82 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.++|.|.|+.|+||||||..+..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 35899999999999999999887
No 376
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.91 E-value=0.41 Score=43.88 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=23.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCCcE
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDY 214 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~ 214 (519)
+.|+|=|..|+||||+++.+.+. ....++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~--L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR--LVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH--HTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHH--HHCCCCE
Confidence 47889999999999999999883 4444544
No 377
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.91 E-value=0.22 Score=44.23 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
...|.|+|..|+|||||...+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 5578899999999999999998753
No 378
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.88 E-value=0.18 Score=44.33 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=20.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998774
No 379
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.86 E-value=0.23 Score=50.14 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||++.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 56899999999999999999876
No 380
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.83 E-value=0.24 Score=43.39 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|.++|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4567899999999999999988753
No 381
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.79 E-value=0.26 Score=42.98 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=20.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
--|.|+|..|+|||||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999998765
No 382
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.74 E-value=0.21 Score=46.58 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=29.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
-.++.|.|.+|+||||||..+..... . .=..++|++... ...++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~-~-~~~~v~~~~~e~--~~~~~~~ 68 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL-K-MGEPGIYVALEE--HPVQVRQ 68 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH-H-TTCCEEEEESSS--CHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEccC--CHHHHHH
Confidence 45899999999999999877654311 1 112466776443 3445544
No 383
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.74 E-value=0.23 Score=47.91 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 46888999999999999987766
No 384
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.74 E-value=0.27 Score=44.74 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
...|.|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999988753
No 385
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.71 E-value=0.2 Score=56.02 Aligned_cols=52 Identities=23% Similarity=0.199 Sum_probs=39.6
Q ss_pred CCCCCCccccchhHHHHHHHHHhcC-----------CCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 154 SSSKNRNMVGLDDRMEELLDLLIEG-----------PTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 154 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+...-.+++|.+..++.|.+.+... -.....+.++|++|+||||||+.+.+.
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 3444567889999998888876531 013456889999999999999999984
No 386
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.71 E-value=0.18 Score=44.61 Aligned_cols=22 Identities=5% Similarity=0.080 Sum_probs=19.7
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998875
No 387
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.71 E-value=0.46 Score=49.56 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=49.3
Q ss_pred ceEEEeeCCCCCCHHHHH-HHHHhccCccCCCcE-EEEEEcCCCCC-HHHHHH-HHHHhcCCCC-CCcCCCCCCH-----
Q 038733 182 LSVVAIPDSIGLDKTIFT-AEAYNSSYVKHYFDY-LAWIPSPYHYD-ADQILD-IVTVILLPFS-MLSKIKDKDY----- 251 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA-~~v~~~~~v~~~F~~-~~wv~vs~~~~-~~~l~~-il~~l~~~~~-~~~~~~~~~~----- 251 (519)
-.-++|.|..|+|||+|| ..|.|.. .-+. ++++-+++..+ +.++.+ +...-..... .-....+...
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 346889999999999995 5788842 2453 56777776543 334444 4331100000 0000011111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEeccccc
Q 038733 252 -EMKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 252 -~~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
......+.+++ +++..||++||+..
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 11122344444 57999999999853
No 388
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.61 E-value=0.3 Score=43.60 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|.|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998764
No 389
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.60 E-value=0.2 Score=45.04 Aligned_cols=24 Identities=4% Similarity=-0.007 Sum_probs=20.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.++|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456789999999999999987763
No 390
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=88.57 E-value=0.19 Score=45.42 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..-|.|+|.+|+|||||.+.+.+
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 56788999999999999998753
No 391
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.55 E-value=0.33 Score=43.19 Aligned_cols=24 Identities=13% Similarity=-0.058 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|..|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999999875
No 392
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.54 E-value=0.22 Score=49.82 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=22.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|+|||||.+.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999995
No 393
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.52 E-value=0.24 Score=44.10 Aligned_cols=25 Identities=4% Similarity=-0.017 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|+|+|..|+|||||...+.+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4458899999999999999998863
No 394
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.48 E-value=0.26 Score=44.41 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999988753
No 395
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=88.48 E-value=0.13 Score=46.71 Aligned_cols=24 Identities=17% Similarity=-0.050 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|+|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999987763
No 396
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.40 E-value=0.26 Score=43.80 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=21.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|.|+|..|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578899999999999999988753
No 397
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.39 E-value=0.24 Score=44.35 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|+|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998753
No 398
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.39 E-value=0.29 Score=44.16 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
..-|.|+|.+|+|||||...+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 5578899999999999999988753
No 399
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.35 E-value=0.27 Score=43.88 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446789999999999999998875
No 400
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=88.31 E-value=0.18 Score=49.30 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=18.5
Q ss_pred EEeeCCCCCCHHHHHHHHHh
Q 038733 185 VAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~ 204 (519)
|+|+|..|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 49999999999999999886
No 401
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=88.26 E-value=0.27 Score=47.97 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 568999999999999999999875
No 402
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.24 E-value=0.27 Score=49.27 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|.|||||.+.+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34999999999999999998876
No 403
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.23 E-value=0.25 Score=43.76 Aligned_cols=26 Identities=8% Similarity=-0.101 Sum_probs=22.3
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
...-|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678899999999999999998754
No 404
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=88.18 E-value=0.26 Score=44.29 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=19.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.--|.|+|.+|+|||||...+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999988774
No 405
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.17 E-value=0.28 Score=44.16 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|..|+|||||...+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 567889999999999999998775
No 406
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.16 E-value=0.23 Score=50.47 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46899999999999999999987
No 407
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.14 E-value=0.29 Score=43.56 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|..|+|||||...+.+.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998765
No 408
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.14 E-value=0.3 Score=44.51 Aligned_cols=24 Identities=8% Similarity=-0.040 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999875
No 409
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.11 E-value=0.28 Score=43.57 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|.|+|.+|+|||||...+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 410
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.09 E-value=0.27 Score=46.07 Aligned_cols=23 Identities=9% Similarity=-0.090 Sum_probs=20.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...++|.|++|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 45689999999999999999877
No 411
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.07 E-value=0.15 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999986
No 412
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.07 E-value=0.19 Score=50.54 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|..|.|||||++.+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999988
No 413
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.03 E-value=0.17 Score=45.82 Aligned_cols=23 Identities=9% Similarity=-0.067 Sum_probs=19.9
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-|+++|.+|+|||||.+.+.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999988763
No 414
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.86 E-value=0.36 Score=43.73 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|.|+|.+|+|||||...+.++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC
Confidence 4567899999999999998888653
No 415
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=87.83 E-value=0.27 Score=44.17 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=20.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999988865
No 416
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.82 E-value=0.25 Score=44.10 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456889999999999999998874
No 417
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.77 E-value=0.25 Score=50.67 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEeeCCCCCCHHHHHHHHHhc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~ 205 (519)
++|+|..|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999874
No 418
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.71 E-value=0.26 Score=44.02 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|..|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 446789999999999999998875
No 419
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.65 E-value=0.26 Score=44.80 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|.+|+|||||...+.+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 557889999999999999988764
No 420
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.61 E-value=0.35 Score=45.11 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=22.6
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
...-|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 35678999999999999999998753
No 421
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=87.56 E-value=0.32 Score=43.42 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=22.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
...-|.|+|..|+|||||...+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46788999999999999999987753
No 422
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.46 E-value=0.35 Score=44.63 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=21.9
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999998775
No 423
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.38 E-value=0.42 Score=43.21 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|.+|+|||||...+.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999998865
No 424
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.31 E-value=0.36 Score=43.59 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
..-|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999988753
No 425
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.29 E-value=0.31 Score=47.62 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
++++.+.+. -.+++++|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 456666654 3488999999999999999998 53
No 426
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=87.29 E-value=0.32 Score=48.74 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=21.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|+|..|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 48999999999999999999874
No 427
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.28 E-value=0.42 Score=46.62 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 168 MEELLDLLIEGPTQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 168 ~~~l~~~L~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
++++.+++. -.+++|+|+.|+|||||.+.+...
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccc
Confidence 566666664 248899999999999999999874
No 428
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.27 E-value=0.4 Score=43.85 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|.|+|.+|+|||||...+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3467799999999999999988753
No 429
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.27 E-value=0.37 Score=42.97 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 430
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.27 E-value=0.3 Score=44.28 Aligned_cols=24 Identities=8% Similarity=-0.076 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998875
No 431
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=87.23 E-value=0.27 Score=44.37 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=20.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 556889999999999999998764
No 432
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.21 E-value=0.23 Score=51.57 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|+|||||++.+.+-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 468999999999999999999873
No 433
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=87.19 E-value=0.37 Score=47.13 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.2
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999998875
No 434
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=87.14 E-value=0.26 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=20.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|..|+|||||...+.++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999998764
No 435
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.07 E-value=0.21 Score=49.58 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=21.0
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|+|..|.|||||++.+..-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999883
No 436
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.05 E-value=0.37 Score=50.87 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|.++|++|.||||+|+.+..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999865
No 437
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.99 E-value=0.26 Score=44.25 Aligned_cols=24 Identities=8% Similarity=-0.148 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998654
No 438
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.98 E-value=0.34 Score=45.17 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=18.2
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.|.+.|.||+||||+|-.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4677899999999998777663
No 439
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=86.97 E-value=0.29 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=20.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 440
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.94 E-value=0.37 Score=43.48 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=18.7
Q ss_pred eEEEee-CCCCCCHHHHHHHHHh
Q 038733 183 SVVAIP-DSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~-G~gGvGKTtLA~~v~~ 204 (519)
++|+|+ +-||+||||+|..+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 688888 6799999999988766
No 441
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=86.89 E-value=0.39 Score=43.58 Aligned_cols=24 Identities=8% Similarity=-0.087 Sum_probs=20.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|.+|+|||||...+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999988865
No 442
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=86.88 E-value=0.35 Score=46.20 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998764
No 443
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=86.86 E-value=0.39 Score=43.26 Aligned_cols=24 Identities=13% Similarity=-0.064 Sum_probs=20.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|.+|+|||||...+.++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446889999999999999998875
No 444
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.86 E-value=0.18 Score=54.28 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=19.5
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-+-++|.+|+|||+||+.+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4778999999999999988873
No 445
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=86.85 E-value=0.32 Score=44.40 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 35899999999999999999988
No 446
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=86.78 E-value=0.5 Score=48.89 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=51.5
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCC--cEEEEEEcCCCCC-HHHHHH-HHHHhcCCCC-CCcCCCCCC------H
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYF--DYLAWIPSPYHYD-ADQILD-IVTVILLPFS-MLSKIKDKD------Y 251 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F--~~~~wv~vs~~~~-~~~l~~-il~~l~~~~~-~~~~~~~~~------~ 251 (519)
.-++|.|..|+|||+|++.+.++......= +.++++-+++..+ ..++.+ +...-..... .--...+.. .
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 456788999999999999999865442211 3566777765433 345555 4432110000 000001111 1
Q ss_pred HHHHHHHHHHhc---CCcEEEEecccc
Q 038733 252 EMKKIILGEYLM---TKRYLIVLDDVW 275 (519)
Q Consensus 252 ~~l~~~l~~~L~---~kr~LlVLDDv~ 275 (519)
....-.+.++++ ++.+||++||+.
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 122334555554 699999999974
No 447
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=86.77 E-value=0.33 Score=43.83 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=21.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...-|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3567889999999999999998775
No 448
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.76 E-value=0.23 Score=52.89 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+|.|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 468999999999999999999883
No 449
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.72 E-value=0.34 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.++.-
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999984
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.69 E-value=0.59 Score=43.90 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=27.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcC
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSP 221 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs 221 (519)
..+|.|.|+.|+||||+++.+..... ...+.....+.-+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep 65 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREP 65 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCC
Confidence 46899999999999999999987422 2345534444433
No 451
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.67 E-value=0.32 Score=50.23 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=22.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|+|||||++.+.+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 568999999999999999999984
No 452
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=86.67 E-value=0.22 Score=43.92 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=10.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..-|.|+|..|+|||||...+.++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999887754
No 453
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=86.64 E-value=0.29 Score=43.21 Aligned_cols=24 Identities=17% Similarity=-0.103 Sum_probs=20.8
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998874
No 454
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.62 E-value=0.33 Score=42.62 Aligned_cols=25 Identities=16% Similarity=-0.056 Sum_probs=21.1
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...-|.|+|..|+|||||...+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999988753
No 455
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.60 E-value=0.32 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|+|..|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 456
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=86.54 E-value=0.38 Score=43.81 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|..|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998874
No 457
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.49 E-value=0.43 Score=44.45 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=22.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...+|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999883
No 458
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=86.42 E-value=0.37 Score=44.30 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=19.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999998764
No 459
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=86.32 E-value=0.71 Score=47.52 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=33.4
Q ss_pred ccchhHHHHHHHHHhcC---------CCcceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 162 VGLDDRMEELLDLLIEG---------PTQLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 162 vGr~~~~~~l~~~L~~~---------~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.|.++-++.|.+.+... .....-|+|+|.+|+|||||.+.+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 35667777777766521 1234689999999999999999998753
No 460
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.30 E-value=0.38 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=20.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999999886
No 461
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=86.25 E-value=0.41 Score=43.76 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=21.4
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|+|+|+.|+||+|.|..+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 357999999999999999998866
No 462
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.21 E-value=0.48 Score=40.93 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=19.9
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
..+..|+|+.|.||||+..+++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999988763
No 463
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=86.19 E-value=0.31 Score=50.18 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=50.1
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCcc--------CCCc-EEEEEEcCCCCC-HHHHHH-HHHHhcCCCC-C-CcCCCCC
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVK--------HYFD-YLAWIPSPYHYD-ADQILD-IVTVILLPFS-M-LSKIKDK 249 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~--------~~F~-~~~wv~vs~~~~-~~~l~~-il~~l~~~~~-~-~~~~~~~ 249 (519)
.-++|.|..|+|||||+..+.+..... ++=+ .++++-+++..+ ..++.+ +...-..... . ....+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 456788999999999999998864431 1112 566777765432 333343 3331000000 0 0000111
Q ss_pred CH-----HHHHHHHHHHhc---CCcEEEEeccccc
Q 038733 250 DY-----EMKKIILGEYLM---TKRYLIVLDDVWS 276 (519)
Q Consensus 250 ~~-----~~l~~~l~~~L~---~kr~LlVLDDv~~ 276 (519)
.. ....-.+.++++ ++.+||++||+..
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11 122234556654 6899999999853
No 464
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=86.16 E-value=0.3 Score=47.55 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=23.1
Q ss_pred CcceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 180 TQLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 180 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.....|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 35788999999999999999999775
No 465
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.14 E-value=0.38 Score=51.08 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=21.6
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||++.+..-
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 466
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.09 E-value=0.34 Score=49.69 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEeeCCCCCCHHHHHHHHHhcc
Q 038733 185 VAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 185 i~I~G~gGvGKTtLA~~v~~~~ 206 (519)
|+|+|..|+|||||.+.+....
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 4999999999999999998753
No 467
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=85.98 E-value=0.43 Score=44.10 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=18.7
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-|.|+|-+|+|||+|.....++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4678999999999999887664
No 468
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=85.94 E-value=0.44 Score=42.21 Aligned_cols=25 Identities=12% Similarity=-0.166 Sum_probs=21.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..--|.|+|.+|+|||||...+.++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3556899999999999999988653
No 469
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.93 E-value=0.96 Score=54.13 Aligned_cols=86 Identities=17% Similarity=0.061 Sum_probs=0.0
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIKDKDYEMKKIILGEYL 262 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~L 262 (519)
+++-|.|.+|+||||||..+.. .....=..++|++....++... ++.++.....-.-....+.+++...++...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~----a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv 457 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY----ARKLGVDIDNLLCSQPDTGEQALEICDALA 457 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH----HHHcCCCHHHeEEcCCCCHHHHHHHHHHHH
Q ss_pred cCCcE-EEEeccc
Q 038733 263 MTKRY-LIVLDDV 274 (519)
Q Consensus 263 ~~kr~-LlVLDDv 274 (519)
+..+. +||+|-+
T Consensus 458 ~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 458 RSGAVDVIVVDSV 470 (1706)
T ss_dssp HHTCCSEEEESCS
T ss_pred HhcCCCEEEECCH
No 470
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=85.92 E-value=0.27 Score=43.80 Aligned_cols=25 Identities=16% Similarity=-0.118 Sum_probs=21.2
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987754
No 471
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.83 E-value=0.35 Score=45.18 Aligned_cols=24 Identities=13% Similarity=-0.019 Sum_probs=18.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-..|.|-|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999884
No 472
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=85.81 E-value=0.44 Score=49.60 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=21.0
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
..+|.++|+.|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468889999999999999998763
No 473
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=85.78 E-value=0.46 Score=49.61 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=53.7
Q ss_pred HHHHHhcCCCcceEEEeeCCCCCCHHHH-HHHHHhccCc----cCCCc-EEEEEEcCCCCC-HHHHHH-HHHHhcCCCC-
Q 038733 171 LLDLLIEGPTQLSVVAIPDSIGLDKTIF-TAEAYNSSYV----KHYFD-YLAWIPSPYHYD-ADQILD-IVTVILLPFS- 241 (519)
Q Consensus 171 l~~~L~~~~~~~~vi~I~G~gGvGKTtL-A~~v~~~~~v----~~~F~-~~~wv~vs~~~~-~~~l~~-il~~l~~~~~- 241 (519)
.++.|..=. .-.-++|.|..|+|||+| ...|.|.... ..+-+ .++++-+++..+ +.++.+ +...-.....
T Consensus 152 aID~l~Pig-rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIG-RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCB-TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccc-cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 444444321 234678999999999999 4677774321 12344 467787876543 334444 4331100000
Q ss_pred CCcCCCCCCH------HHHHHHHHHHh--cCCcEEEEeccccc
Q 038733 242 MLSKIKDKDY------EMKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 242 ~~~~~~~~~~------~~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
.-....+... ......+.+++ +++.+||++||+..
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 0000011111 11122344444 57999999999853
No 474
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.76 E-value=0.65 Score=42.86 Aligned_cols=48 Identities=13% Similarity=0.039 Sum_probs=29.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD 231 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~ 231 (519)
..|.+-|..|+||||+++.+...-. ...+..+.+..-+.....-+.++
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~~t~~g~~ir 51 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTREPGGTQLAEKLR 51 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceeeeCCCCCHHHHHHH
Confidence 5789999999999999999988422 22343334444333322333344
No 475
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.66 E-value=0.41 Score=51.58 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|+.|.|||||++.+..-
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999984
No 476
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.59 E-value=0.4 Score=50.83 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=22.2
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.-.+++|+|+.|.|||||.+.+..-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3579999999999999999999873
No 477
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.53 E-value=0.42 Score=51.44 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=21.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.+++|+|..|.|||||++.+..-
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 57999999999999999999874
No 478
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=85.53 E-value=0.38 Score=45.46 Aligned_cols=26 Identities=8% Similarity=0.026 Sum_probs=22.0
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678999999999999999987653
No 479
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=85.49 E-value=0.48 Score=43.52 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.1
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
.--|.|+|..|+|||||...+.+.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998875
No 480
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=85.30 E-value=0.5 Score=46.07 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|+|+|.+|+|||||...+...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 567999999999999999998875
No 481
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=85.19 E-value=0.71 Score=44.30 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999874
No 482
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=85.09 E-value=0.45 Score=42.73 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=17.8
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.++.|+|+.|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999844443
No 483
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.06 E-value=1.7 Score=52.74 Aligned_cols=102 Identities=18% Similarity=-0.010 Sum_probs=60.0
Q ss_pred HHHHHHHh-cCCCcceEEEeeCCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHHHHHHhcCCCCCCcCCC
Q 038733 169 EELLDLLI-EGPTQLSVVAIPDSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILDIVTVILLPFSMLSKIK 247 (519)
Q Consensus 169 ~~l~~~L~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~il~~l~~~~~~~~~~~ 247 (519)
..|-.+|. .+=..-+++-|.|.+|+||||||..+...... .=..++|++....++... ++.++.......-..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~~----a~~lGvd~~~L~I~~ 442 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY----ARKLGVDIDNLLCSQ 442 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH----HHHTTCCTTTCEEEC
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHHH----HHHcCCCHHHeEEeC
Confidence 34444443 22123569999999999999999888774322 223578888877776432 333433211000012
Q ss_pred CCCHHHHHHHHHHHhc-CCcEEEEeccccc
Q 038733 248 DKDYEMKKIILGEYLM-TKRYLIVLDDVWS 276 (519)
Q Consensus 248 ~~~~~~l~~~l~~~L~-~kr~LlVLDDv~~ 276 (519)
..+.+++...++...+ .+--+||+|-+..
T Consensus 443 ~~~~e~il~~~~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 443 PDTGEQALEICDALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence 2356667666665543 3455899998853
No 484
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=85.03 E-value=1.3 Score=45.99 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=48.7
Q ss_pred ceEEEeeCCCCCCHHHHH-HHHHhccCccCCCc-EEEEEEcCCCCC-HHHHHH-HHHHhcCCCC-CCcCCCCCCH-----
Q 038733 182 LSVVAIPDSIGLDKTIFT-AEAYNSSYVKHYFD-YLAWIPSPYHYD-ADQILD-IVTVILLPFS-MLSKIKDKDY----- 251 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA-~~v~~~~~v~~~F~-~~~wv~vs~~~~-~~~l~~-il~~l~~~~~-~~~~~~~~~~----- 251 (519)
-.-++|.|..|+|||+|| ..+.|. .+-+ .++++-+++..+ +.++.+ +.+.-..... .-....+...
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 346789999999999996 677773 2233 357888886543 334444 4332111000 0000001111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEeccccc
Q 038733 252 -EMKKIILGEYL--MTKRYLIVLDDVWS 276 (519)
Q Consensus 252 -~~l~~~l~~~L--~~kr~LlVLDDv~~ 276 (519)
......+.+++ +++..||++||+..
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 11112233444 57999999999853
No 485
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=84.99 E-value=0.47 Score=44.69 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhcc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNSS 206 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~~ 206 (519)
.--|+++|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4568899999999999999988753
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.97 E-value=0.46 Score=51.14 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=21.7
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|+.|+|||||.+.+..-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 469999999999999999999863
No 487
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=84.90 E-value=0.74 Score=48.87 Aligned_cols=24 Identities=13% Similarity=-0.128 Sum_probs=21.5
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|.+.|+.|+||||+|+.+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~ 394 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILAT 394 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHH
Confidence 357899999999999999999877
No 488
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=84.72 E-value=0.56 Score=50.15 Aligned_cols=24 Identities=8% Similarity=-0.045 Sum_probs=21.6
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|.|.|+.|+||||+|+.+..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 489
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=84.57 E-value=0.83 Score=49.55 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCCcceEEEeeCCCCCCHHH-HHHHHHhccCccCCCcEEEEEEcCCCCCHHHHHH-HHH
Q 038733 167 RMEELLDLLIEGPTQLSVVAIPDSIGLDKTI-FTAEAYNSSYVKHYFDYLAWIPSPYHYDADQILD-IVT 234 (519)
Q Consensus 167 ~~~~l~~~L~~~~~~~~vi~I~G~gGvGKTt-LA~~v~~~~~v~~~F~~~~wv~vs~~~~~~~l~~-il~ 234 (519)
..+.+...|...+ +.-|+|++|.|||+ ++..|+. .++. ..++.|+......+..++. +..
T Consensus 194 Q~~AV~~al~~~~----~~lI~GPPGTGKT~ti~~~I~~--l~~~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 194 QKEAVLFALSQKE----LAIIHGPPGTGKTTTVVEIILQ--AVKQ--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHCSS----EEEEECCTTSCHHHHHHHHHHH--HHHT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC----ceEEECCCCCCHHHHHHHHHHH--HHhC--CCeEEEEcCchHHHHHHHHHHHh
Confidence 3444555555433 66789999999997 5555554 2222 2367787776666667766 543
No 490
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=84.52 E-value=0.53 Score=50.70 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=21.8
Q ss_pred cceEEEeeCCCCCCHHHHHHHHHh
Q 038733 181 QLSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 181 ~~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
...+|.+.|+.|+||||+|+.+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999877
No 491
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.35 E-value=0.43 Score=47.84 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=19.5
Q ss_pred EEEeeCCCCCCHHHHHHHHHhc
Q 038733 184 VVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 184 vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-|+|+|..|+|||||...++..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3689999999999999998774
No 492
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.34 E-value=0.49 Score=50.72 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=21.4
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 493
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.21 E-value=0.47 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.054 Sum_probs=21.5
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHhc
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
-.+++|+|..|.|||||.+.+..-
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 459999999999999999999863
No 494
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=84.14 E-value=0.69 Score=46.51 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.2
Q ss_pred CcceEEEeeC-CCCCCHHHHHHHHHh
Q 038733 180 TQLSVVAIPD-SIGLDKTIFTAEAYN 204 (519)
Q Consensus 180 ~~~~vi~I~G-~gGvGKTtLA~~v~~ 204 (519)
...++|+|+| -||+||||+|..+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH
Confidence 4589999985 999999999987765
No 495
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=84.00 E-value=0.41 Score=45.82 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=20.0
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
--|+|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999998764
No 496
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=83.97 E-value=0.6 Score=42.72 Aligned_cols=36 Identities=11% Similarity=-0.043 Sum_probs=23.5
Q ss_pred EEEee-CCCCCCHHHHHHHHHhccCccCCCcEEEEEEcCC
Q 038733 184 VVAIP-DSIGLDKTIFTAEAYNSSYVKHYFDYLAWIPSPY 222 (519)
Q Consensus 184 vi~I~-G~gGvGKTtLA~~v~~~~~v~~~F~~~~wv~vs~ 222 (519)
+|+|+ +-||+||||+|..+..- ....= .+.-+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~--la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAY--LALQG-ETLLIDGDP 38 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHTTS-CEEEEEECT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHH--HHhcC-CEEEEECCC
Confidence 67775 78999999999888763 22222 445555443
No 497
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=83.88 E-value=1 Score=45.52 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.2
Q ss_pred CCcceEEEee-CCCCCCHHHHHHHHHh
Q 038733 179 PTQLSVVAIP-DSIGLDKTIFTAEAYN 204 (519)
Q Consensus 179 ~~~~~vi~I~-G~gGvGKTtLA~~v~~ 204 (519)
....++|+|+ |-||+||||+|..+..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~ 131 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAH 131 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHH
Confidence 3457899998 7899999998877765
No 498
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=83.84 E-value=0.64 Score=43.82 Aligned_cols=22 Identities=5% Similarity=-0.049 Sum_probs=20.2
Q ss_pred eEEEeeCCCCCCHHHHHHHHHh
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~ 23 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 499
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=83.82 E-value=0.46 Score=50.94 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=21.3
Q ss_pred ceEEEeeCCCCCCHHHHHHHHHh
Q 038733 182 LSVVAIPDSIGLDKTIFTAEAYN 204 (519)
Q Consensus 182 ~~vi~I~G~gGvGKTtLA~~v~~ 204 (519)
-.+++|+|+.|.|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999987
No 500
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=83.75 E-value=0.54 Score=44.67 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=20.6
Q ss_pred eEEEeeCCCCCCHHHHHHHHHhc
Q 038733 183 SVVAIPDSIGLDKTIFTAEAYNS 205 (519)
Q Consensus 183 ~vi~I~G~gGvGKTtLA~~v~~~ 205 (519)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998775
Done!