BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038739
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 170/357 (47%), Gaps = 31/357 (8%)
Query: 34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG 93
++L+EL L N + + P ++ N S L L LS N G +P S+G+L L+ L L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 94 YFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNF 153
GE+P + + +LE L L FN+ +GE P N ++L + L + G++P IG
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 154 TQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS 213
L L L +N+FSG++ +G+ RSL +++ F+G I +++ S A +
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 214 YRGMIELDVLLTSWKN----LEFLGL---SLNRLSVLTKATSDTTSQKLKYIGLRSCNLT 266
I+ D + LEF G+ LNRLS T+ + TS+ Y G S
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS--TRNPCNITSR--VYGGHTS---- 622
Query: 267 KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHXXXXXX 326
P F N + F+D+S N + G +PK + +M L N HN ++G
Sbjct: 623 --PTF-DNNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISG---------S 668
Query: 327 XXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNF 383
I L+S N L G IP + L +L + LS+NNLSG +P+ +G F
Sbjct: 669 IPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQF 723
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 181/386 (46%), Gaps = 48/386 (12%)
Query: 28 VSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87
V V +LE LD+S+N S+ P +G+ S+L+ LD+S N+ G+ ++ LK+L
Sbjct: 191 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 249
Query: 88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKV 146
++S N + G +P L SL+ L L+ N F+GE P + +G +L LDL F+G V
Sbjct: 250 NISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Query: 147 PHSIGNFTQLQYLHLGSNNFSGDL-LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQ-L 204
P G+ + L+ L L SNNFSG+L + + +R L+ ++++ FSG++ SL NLS L
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 205 TALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN 264
LDL+ N++ G I ++ L+ L L N +
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT----------------------- 404
Query: 265 LTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHXXXX 324
K P L N L + LS N + G +P L ++ L N+L G
Sbjct: 405 -GKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 325 XXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFS 384
T + N LTGEIPS + N L + LS+N L+G +P+ +G
Sbjct: 462 VKTLE----------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL- 510
Query: 385 DELLVLDLQGN----NLPLSKG-CES 405
+ L +L L N N+P G C S
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRS 536
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 166/366 (45%), Gaps = 52/366 (14%)
Query: 28 VSVGNLHSLEELDLSANFLSSEWPISIG-NLSSLKELDLSQNRFFGELPIS---MGNLGS 83
S+G+ L+ L++S+N L +S G L+SL+ LDLS N G + G
Sbjct: 117 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW 143
LK L +S N G++ + +LE LD+S NNFS P+ G+ S+L+ LD+
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 233
Query: 144 GKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRN-LS 202
G +I T+L+ L++ SN F G + P L+SL+ +++A+ F+G+I L
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 203 QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRS 262
LT LDL+ N + G + F G L +S+ S +L
Sbjct: 292 TLTGLDLSGNHFYGAVP-----------PFFGSC--SLLESLALSSNNFSGELPM----- 333
Query: 263 CNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQ----NLNGFNFSHNLLTGFD 318
+ L L+ +DLS N G++P+ L + + +L+ NFS +L
Sbjct: 334 -------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 319 QHXXXXXXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 378
Q+ YL NN TG+IP + N + L SL LS N LSG +P
Sbjct: 387 QNPKNTLQEL------------YL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 379 CLGNFS 384
LG+ S
Sbjct: 434 SLGSLS 439
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 124/302 (41%), Gaps = 46/302 (15%)
Query: 23 QGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG 82
+GE+P + + +LE L L N L+ E P + N ++L + LS NR GE+P +G L
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWS--------TGNFSSLKL 134
+L +L LS N + G +P + + SL LDL+ N F+G P + NF + K
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 135 LDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQI 194
K H GN + Q + N L + N+ + G
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLN----------RLSTRNPCNITSRVYGGHT 621
Query: 195 TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQK 254
+ + N + LD++ N G I ++ S L L L N +S
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDIS------------- 666
Query: 255 LKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLL 314
P+ + + L +DLS N++ G++P+ + M L + S+N L
Sbjct: 667 -----------GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM--LTEIDLSNNNL 713
Query: 315 TG 316
+G
Sbjct: 714 SG 715
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 17/217 (7%)
Query: 195 TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQK 254
S + + LT+LDL++NS G + L S L+FL +S N L K +
Sbjct: 90 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 149
Query: 255 LKYIGLRSCNLTKFPNFL-----QNQHHLRFMDLSDNRIQGKVP-KWLLDPNMQNLNGFN 308
L+ + L S N N + L+ + +S N+I G V ++ +++ N
Sbjct: 150 LEVLDL-SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 208
Query: 309 FSHNLLTGFD----QHXXXXXXXXXXXXXXXXXTITYLA----SNNSLTGEIPSWICNLN 360
FS + D QH T T L S+N G IP L
Sbjct: 209 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 266
Query: 361 ILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
L+ L L+ N +G +P L D L LDL GN+
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 170/357 (47%), Gaps = 31/357 (8%)
Query: 34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG 93
++L+EL L N + + P ++ N S L L LS N G +P S+G+L L+ L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 94 YFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNF 153
GE+P + + +LE L L FN+ +GE P N ++L + L + G++P IG
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 154 TQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS 213
L L L +N+FSG++ +G+ RSL +++ F+G I +++ S A +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 214 YRGMIELDVLLTSWKN----LEFLGL---SLNRLSVLTKATSDTTSQKLKYIGLRSCNLT 266
I+ D + LEF G+ LNRLS T+ + TS+ Y G S
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS--TRNPCNITSR--VYGGHTS---- 625
Query: 267 KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHXXXXXX 326
P F N + F+D+S N + G +PK + +M L N HN ++G
Sbjct: 626 --PTF-DNNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISG---------S 671
Query: 327 XXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNF 383
I L+S N L G IP + L +L + LS+NNLSG +P+ +G F
Sbjct: 672 IPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQF 726
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 181/386 (46%), Gaps = 48/386 (12%)
Query: 28 VSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87
V V +LE LD+S+N S+ P +G+ S+L+ LD+S N+ G+ ++ LK+L
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKV 146
++S N + G +P L SL+ L L+ N F+GE P + +G +L LDL F+G V
Sbjct: 253 NISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 147 PHSIGNFTQLQYLHLGSNNFSGDL-LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQ-L 204
P G+ + L+ L L SNNFSG+L + + +R L+ ++++ FSG++ SL NLS L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 205 TALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN 264
LDL+ N++ G I ++ L+ L L N +
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT----------------------- 407
Query: 265 LTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHXXXX 324
K P L N L + LS N + G +P L ++ L N+L G
Sbjct: 408 -GKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 325 XXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFS 384
T + N LTGEIPS + N L + LS+N L+G +P+ +G
Sbjct: 465 VKTLE----------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL- 513
Query: 385 DELLVLDLQGN----NLPLSKG-CES 405
+ L +L L N N+P G C S
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRS 539
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 166/366 (45%), Gaps = 52/366 (14%)
Query: 28 VSVGNLHSLEELDLSANFLSSEWPISIG-NLSSLKELDLSQNRFFGELPIS---MGNLGS 83
S+G+ L+ L++S+N L +S G L+SL+ LDLS N G + G
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW 143
LK L +S N G++ + +LE LD+S NNFS P+ G+ S+L+ LD+
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236
Query: 144 GKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQ 203
G +I T+L+ L++ SN F G + P L+SL+ +++A+ F+G+I L
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 204 -LTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRS 262
LT LDL+ N + G + F G L +S+ S +L
Sbjct: 295 TLTGLDLSGNHFYGAVP-----------PFFGSC--SLLESLALSSNNFSGELPM----- 336
Query: 263 CNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQ----NLNGFNFSHNLLTGFD 318
+ L L+ +DLS N G++P+ L + + +L+ NFS +L
Sbjct: 337 -------DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 319 QHXXXXXXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 378
Q+ YL NN TG+IP + N + L SL LS N LSG +P
Sbjct: 390 QNPKNTLQEL------------YL-QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 379 CLGNFS 384
LG+ S
Sbjct: 437 SLGSLS 442
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 124/302 (41%), Gaps = 46/302 (15%)
Query: 23 QGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG 82
+GE+P + + +LE L L N L+ E P + N ++L + LS NR GE+P +G L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWS--------TGNFSSLKL 134
+L +L LS N + G +P + + SL LDL+ N F+G P + NF + K
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 135 LDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQI 194
K H GN + Q + N L + N+ + G
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLN----------RLSTRNPCNITSRVYGGHT 624
Query: 195 TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQK 254
+ + N + LD++ N G I ++ S L L L N +S
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEI--GSMPYLFILNLGHNDIS------------- 669
Query: 255 LKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLL 314
P+ + + L +DLS N++ G++P+ + M L + S+N L
Sbjct: 670 -----------GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM--LTEIDLSNNNL 716
Query: 315 TG 316
+G
Sbjct: 717 SG 718
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 17/217 (7%)
Query: 195 TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQK 254
S + + LT+LDL++NS G + L S L+FL +S N L K +
Sbjct: 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152
Query: 255 LKYIGLRSCNLTKFPNFL-----QNQHHLRFMDLSDNRIQGKVP-KWLLDPNMQNLNGFN 308
L+ + L S N N + L+ + +S N+I G V ++ +++ N
Sbjct: 153 LEVLDL-SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 211
Query: 309 FSHNLLTGFD----QHXXXXXXXXXXXXXXXXXTITYLA----SNNSLTGEIPSWICNLN 360
FS + D QH T T L S+N G IP L
Sbjct: 212 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 269
Query: 361 ILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
L+ L L+ N +G +P L D L LDL GN+
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 119/286 (41%), Gaps = 56/286 (19%)
Query: 34 HSLEELDLSANFLSSEWPI--SIGNLSSLKELDLSQ-NRFFGELPISMGNLGSLKVLDLS 90
+ + LDLS L +PI S+ NL L L + N G +P ++ L L L ++
Sbjct: 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI 150
G +P + + +L LD S+N SG P S + +L + G +P S
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 151 GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLA 210
G+F++L ++ +++ +G+I + NL+ L +DL+
Sbjct: 170 GSFSKL-----------------------FTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 211 QNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN 270
+N G + VL S KN + + L+ N L+ L +GL
Sbjct: 206 RNMLEG--DASVLFGSDKNTQKIHLAKNSLAF-----------DLGKVGL---------- 242
Query: 271 FLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTG 316
+L +DL +NRI G +P+ L ++ L+ N S N L G
Sbjct: 243 ----SKNLNGLDLRNNRIYGTLPQGLTQ--LKFLHSLNVSFNNLCG 282
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 18/235 (7%)
Query: 146 VPHSIGNFTQLQYLHLGS-NNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQL 204
+P S+ N L +L++G NN G + I L L + + N SG I L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 205 TALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN 264
LD + N+ G + + +S NL + NR+S + + S+ + +
Sbjct: 128 VTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 265 LT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHXXX 323
LT K P N + L F+DLS N ++G +L + +N + + N L FD
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDA--SVLFGSDKNTQKIHLAKNSL-AFDLGKVG 241
Query: 324 XXXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 378
NN + G +P + L L SL +S NNL G +PQ
Sbjct: 242 LSKNLNGLDL----------RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 341 YLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
Y+ N+L G IP I L L L ++H N+SG +P L L+ LD N L
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNAL 137
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 16/154 (10%)
Query: 248 SDTTSQKLKYIGLRSCNLTK---FPNFLQNQHHLRFMDLSD-NRIQGKVPKWLLDPNMQN 303
+DT + ++ + L NL K P+ L N +L F+ + N + G +P + +
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--LTQ 102
Query: 304 LNGFNFSHNLLTGFDQHXXXXXXXXXXXXXXXXXTITYLASNNSLTGEIPSWICNLNILE 363
L+ +H ++G +T S N+L+G +P I +L L
Sbjct: 103 LHYLYITHTNVSG----------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 364 SLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397
+ N +SG +P G+FS + + N L
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 13/196 (6%)
Query: 28 VSVGNLHSLEELDLSANFLSSEWPI-SIGNLSSLKELDLSQNRFFGE--LPISMGNLGSL 84
+S N SL L + N + + L +L+ LDLS N + + NL L
Sbjct: 316 ISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHL 375
Query: 85 KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWST-GNFSSLKLLDLRSCGFW 143
+ L+LS N G + + LE LDL+F P S N L++L+L C
Sbjct: 376 QTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLD 435
Query: 144 GKVPHSIGNFTQLQYLHLGSNNFSG------DLLGPIGNLRSLEAINVAKCNFSGQITSS 197
H + L++L+L N+F +LL +G SLE + ++ C +
Sbjct: 436 TSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVG---SLEVLILSSCGLLSIDQQA 492
Query: 198 LRNLSQLTALDLAQNS 213
+L +++ +DL+ NS
Sbjct: 493 FHSLGKMSHVDLSHNS 508
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 114/271 (42%), Gaps = 40/271 (14%)
Query: 30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDL 89
+G +++ D+S+ L +S+ + L+L ++RF + L+ LDL
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCEMSV------ESLNLQEHRFSDISSTTFQCFTQLQELDL 282
Query: 90 SQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHS 149
+ G LP+ ++ L L+KL LS N+F S NF SL L +R
Sbjct: 283 TATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR----------- 330
Query: 150 IGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE----AINVAKCNFSGQITSSLRNLSQLT 205
GN ++ LHLG L +GNL++L+ I + C + L+NLS L
Sbjct: 331 -GN---VKKLHLGVG-----CLEKLGNLQTLDLSHNDIEASDC-----CSLQLKNLSHLQ 376
Query: 206 ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNL 265
L+L+ N G+ LE L L+ RL + + L+ + L C L
Sbjct: 377 TLNLSHNEPLGL--QSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFL 434
Query: 266 -TKFPNFLQNQHHLRFMDLSDNRIQ-GKVPK 294
T + L LR ++L N Q G + K
Sbjct: 435 DTSNQHLLAGLPVLRHLNLKGNHFQDGTITK 465
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL----GSLKVL 87
NLH L+ L+L+ FL + + L L+ L+L N F + I+ NL GSL+VL
Sbjct: 420 NLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF-QDGTITKTNLLQTVGSLEVL 478
Query: 88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE 121
LS G + +L + +DLS N+ + +
Sbjct: 479 ILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCD 512
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 26 LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKE----LDLSQNRF----FGELPIS 77
LP S+ +L+ L EL + A +E P + + + E ++L R LP S
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201
Query: 78 MGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDL 137
+ NL +LK L + +N L +I +L LE+LDL +P G + LK L L
Sbjct: 202 IANLQNLKSLKI-RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260
Query: 138 RSCGFWGKVPHSIGNFTQLQYLHL-GSNNFS 167
+ C +P I TQL+ L L G N S
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%)
Query: 29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
++ +L LEELDL +P G + LK L L LP+ + L L+ LD
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 89 LSQNGYFGELPTSIRNL 105
L LP+ I L
Sbjct: 284 LRGCVNLSRLPSLIAQL 300
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 18/240 (7%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
NL +L L+LS+N +S +S L+SL++L+ S N+ P + NL +L+ LD+S
Sbjct: 127 NLTNLNRLELSSNTISDISALS--GLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
N + + L +LE L + N S P G ++L L L G K ++
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLN--GNQLKDIGTLA 236
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
+ T L L L +N S L P+ L L + + S S L L+ LT L+L +
Sbjct: 237 SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 292
Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
N + + ++ KNL +L L N +S ++ +S T Q+L + + +++ N
Sbjct: 293 NQLEDISPI----SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 348
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
++ +L +L +LDL+ N +S+ P+S L+ L EL L N+ P + L +L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW-GKVP 147
L++N P I NL +L L L FNN S P S+ L L+ F+ KV
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS-------LTKLQRLFFYNNKVS 340
Query: 148 H--SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
S+ N T + +L G N S L P+ NL +
Sbjct: 341 DVSSLANLTNINWLSAGHNQISD--LTPLANLTRI 373
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 30 VGNLHSLEELDLSANFLSSEWPISI-GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
+ NL +LE LD+S+N +S IS+ L++L+ L + N+ P LG L LD
Sbjct: 169 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP-----LGILTNLD 220
Query: 89 -LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP 147
LS NG + ++ +L +L LDL+ N S P S + L L L + P
Sbjct: 221 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP 278
Query: 148 HSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG-QITSSLRNLSQL 204
+ T L L L N + PI NL++L + + N S SSL L +L
Sbjct: 279 --LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 18/240 (7%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
NL +L L+LS+N +S +S L+SL++L S N+ P + NL +L+ LD+S
Sbjct: 127 NLTNLNRLELSSNTISDISALS--GLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
N + + L +LE L + N S P G ++L L L G K ++
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLN--GNQLKDIGTLA 236
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
+ T L L L +N S L P+ L L + + S S L L+ LT L+L +
Sbjct: 237 SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 292
Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
N + + ++ KNL +L L N +S ++ +S T Q+L + + +++ N
Sbjct: 293 NQLEDISPI----SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 348
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
++ +L +L +LDL+ N +S+ P+S L+ L EL L N+ P + L +L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW-GKVP 147
L++N P I NL +L L L FNN S P S+ L L+ F+ KV
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS-------LTKLQRLFFYNNKVS 340
Query: 148 H--SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
S+ N T + +L G N S L P+ NL +
Sbjct: 341 DVSSLANLTNINWLSAGHNQISD--LTPLANLTRI 373
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 30 VGNLHSLEELDLSANFLSSEWPISI-GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
+ NL +LE LD+S+N +S IS+ L++L+ L + N+ P LG L LD
Sbjct: 169 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP-----LGILTNLD 220
Query: 89 -LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP 147
LS NG + ++ +L +L LDL+ N S P S + L L L + P
Sbjct: 221 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP 278
Query: 148 HSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG-QITSSLRNLSQL 204
+ T L L L N + PI NL++L + + N S SSL L +L
Sbjct: 279 --LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 18/240 (7%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
NL +L L+LS+N +S +S L+SL++L S N+ P + NL +L+ LD+S
Sbjct: 127 NLTNLNRLELSSNTISDISALS--GLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
N + + L +LE L + N S P G ++L L L G K ++
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLN--GNQLKDIGTLA 236
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
+ T L L L +N S L P+ L L + + S S L L+ LT L+L +
Sbjct: 237 SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 292
Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
N + + ++ KNL +L L N +S ++ +S T Q+L + + +++ N
Sbjct: 293 NQLEDISPI----SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANL 348
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 24/158 (15%)
Query: 29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
++ +L +L +LDL+ N +S+ P+S L+ L EL L N+ P + L +L L+
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGN------FSSLKLLDLRSCGF 142
L++N P I NL +L L L FNN S P S+ FS+ K+ D+
Sbjct: 290 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDV----- 342
Query: 143 WGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
S+ N T + +L G N S L P+ NL +
Sbjct: 343 -----SSLANLTNINWLSAGHNQISD--LTPLANLTRI 373
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 30 VGNLHSLEELDLSANFLSSEWPISI-GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
+ NL +LE LD+S+N +S IS+ L++L+ L + N+ P LG L LD
Sbjct: 169 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP-----LGILTNLD 220
Query: 89 -LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP 147
LS NG + ++ +L +L LDL+ N S P S + L L L + P
Sbjct: 221 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP 278
Query: 148 HSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG-QITSSLRNLSQL 204
+ T L L L N + PI NL++L + + N S SSL L +L
Sbjct: 279 --LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 111/271 (40%), Gaps = 86/271 (31%)
Query: 36 LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGY 94
LEEL+L+ N +S+ P + NL +L+ L L NR +P+ + L +L LD+S+N
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKI 116
Query: 95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
L ++L++L+ L++ N+
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDL------------------------------------ 140
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ--- 211
+++ FSG L SLE + + KCN + T +L +L L L L
Sbjct: 141 ----VYISHRAFSG--------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188
Query: 212 -----NSYRGMIELDVL-LTSWKNLEFL------GLSLNRLSVLTKATSDTTSQKLKYIG 259
S++ + L VL ++ W L+ + GL+L LS+
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT---------------- 232
Query: 260 LRSCNLTKFPNFLQNQH--HLRFMDLSDNRI 288
CNLT P +L +H +LRF++LS N I
Sbjct: 233 --HCNLTAVP-YLAVRHLVYLRFLNLSYNPI 260
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 126/302 (41%), Gaps = 48/302 (15%)
Query: 26 LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPI-SMGNLGSL 84
LP + ++SL++L L+AN I+ + SL++L + N +L + L +L
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENL 351
Query: 85 KVLDLSQNGYFGE--LPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF 142
+ LDLS + ++NL L+ L+LS+N G + L+LLD+
Sbjct: 352 QKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHL 411
Query: 143 WGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLS 202
K PHS P NL L +N++ C L L
Sbjct: 412 HVKAPHS-----------------------PFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 203 QLTALDLAQNSYR-GMIELDVLLTSWKNLEFLGL-SLNRLSVLTKATSDTTSQKLKYIGL 260
L L+L NS++ G I LL +LE L L S N LS+ +A + GL
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQA----------FHGL 498
Query: 261 RSCNLTKFP------NFLQNQHHLR--FMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHN 312
R+ N + + HL+ +++++ N I+ +P LL P + + N SHN
Sbjct: 499 RNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIR-IIPPHLL-PALSQQSIINLSHN 556
Query: 313 LL 314
L
Sbjct: 557 PL 558
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 120/292 (41%), Gaps = 27/292 (9%)
Query: 36 LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQNGY 94
L+ L L+ +S+ I + NL +L+ L L N LP + +LKVLD N
Sbjct: 106 LKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPT-QNLKVLDFQNNAI 164
Query: 95 FGELPTSIRNLFSLEKLDLSFN--NFSGEFP--WSTGNFSSLKL-----LDLRSCGFWGK 145
+L L L+FN + G P + + F SLK L + G
Sbjct: 165 HYISRKDTNSLEQATNLSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNS 224
Query: 146 VPHSI--GNFTQLQYLHLGSNNFSG--DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNL 201
S+ G F +L S F G D+ S+E+IN+ K FS +S+ R
Sbjct: 225 TLQSLWLGTFEDTDDQYLTSATFEGLCDM--------SVESINLQKHRFSDLSSSTFRCF 276
Query: 202 SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLR 261
+++ LDL G+ + S K L S ++L + A+ + +R
Sbjct: 277 TRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMR 336
Query: 262 SCNL-TKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHN 312
+L T+ L+N L+ +DLS + I+ L N+++L N S+N
Sbjct: 337 KLDLGTRCLEKLEN---LQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYN 385
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
++ +L +L +LDL+ N +S+ P+S L+ L EL L N+ P + L +L L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW-GKVP 147
L++N P I NL +L L L FNN S P S+ L L+ F+ KV
Sbjct: 289 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS-------LTKLQRLFFYNNKVS 339
Query: 148 H--SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
S+ N T + +L G N S L P+ NL +
Sbjct: 340 DVSSLANLTNINWLSAGHNQISD--LTPLANLTRI 372
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 19/240 (7%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
NL +L L+LS+N +S +S L+SL++L+ N+ P + NL +L+ LD+S
Sbjct: 127 NLTNLNRLELSSNTISDISALS--GLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISS 181
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
N + + L +LE L + N S P G ++L L L G K ++
Sbjct: 182 NKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLN--GNQLKDIGTLA 235
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
+ T L L L +N S L P+ L L + + S S L L+ LT L+L +
Sbjct: 236 SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 291
Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
N + + ++ KNL +L L N +S ++ +S T Q+L + + +++ N
Sbjct: 292 NQLEDISPI----SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 347
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 30 VGNLHSLEELDLSANFLSSEWPISI-GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
+ NL +LE LD+S+N +S IS+ L++L+ L + N+ P LG L LD
Sbjct: 168 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP-----LGILTNLD 219
Query: 89 -LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP 147
LS NG + ++ +L +L LDL+ N S P S + L L L + P
Sbjct: 220 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP 277
Query: 148 HSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG-QITSSLRNLSQL 204
+ T L L L N + PI NL++L + + N S SSL L +L
Sbjct: 278 --LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
++ +L +L +LDL+ N +S+ P+S L+ L EL L N+ P + L +L L+
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 293
Query: 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW-GKVP 147
L++N P I NL +L L L FNN S P S+ L L+ F+ KV
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS-------LTKLQRLFFYNNKVS 344
Query: 148 H--SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
S+ N T + +L G N S L P+ NL +
Sbjct: 345 DVSSLANLTNINWLSAGHNQISD--LTPLANLTRI 377
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
NL +L L+LS+N +S +S L+SL++L N+ P + NL +L+ LD+S
Sbjct: 132 NLTNLNRLELSSNTISDISALS--GLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISS 186
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
N + + L +LE L + N S P G ++L L L G K ++
Sbjct: 187 NKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLN--GNQLKDIGTLA 240
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
+ T L L L +N S L P+ L L + + S S L L+ LT L+L +
Sbjct: 241 SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 296
Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
N + + ++ KNL +L L N +S ++ +S T Q+L + + +++ N
Sbjct: 297 NQLEDISPI----SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 352
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 30 VGNLHSLEELDLSANFLSSEWPISI-GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
+ NL +LE LD+S+N +S IS+ L++L+ L + N+ P LG L LD
Sbjct: 173 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP-----LGILTNLD 224
Query: 89 -LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP 147
LS NG + ++ +L +L LDL+ N S P S + L L L + P
Sbjct: 225 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP 282
Query: 148 HSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG-QITSSLRNLSQL 204
+ T L L L N + PI NL++L + + N S SSL L +L
Sbjct: 283 --LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 102/247 (41%), Gaps = 36/247 (14%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNL--SSLKELDLSQNRFFGELPISMGNLG--SLKVL 87
+L SLE LDLS N LS + S + +SLK LDLS N G + +S LG L+ L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQLEHL 401
Query: 88 D-----LSQNGYFGELPTSIRNLF---------------------SLEKLDLSFNNFSGE 121
D L Q F S+RNL SLE L ++ N+F
Sbjct: 402 DFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 122 F-PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
F P +L LDL C P + + + LQ L++ NNF P L SL
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
Query: 181 EAINVAKCNFSGQITSSLRNL-SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR 239
+ ++ + + L++ S L L+L QN + E L K+ L + + R
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 580
Query: 240 LSVLTKA 246
+ T +
Sbjct: 581 MECATPS 587
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
F ++P ++ FS + LDLSFN +S +F L++LDL C + + +
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
L L L N LG L SL+ + + N + + +L L L++A N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRL 240
+ +L ++ NLE L LS N++
Sbjct: 137 QS-FKLPEYFSNLTNLEHLDLSSNKI 161
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 26 LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLK 85
LP L +L LDLS L P + +LSSL+ L++S N FF L SL+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 86 VLDLSQNGYFGELPTSIRNL-FSLEKLDLSFNNFS 119
VLD S N +++ SL L+L+ N+F+
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQ 91
L SL++L L+S IG+L +LKEL+++ N +LP NL +L+ LDLS
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 92 NGYFGELPTSIRNL 105
N T +R L
Sbjct: 159 NKIQSIYCTDLRVL 172
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
F ++P ++ FS + LDLSFN +S +F L++LDL C + + +
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
L L L N LG L SL+ + + N + + +L L L++A N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRL 240
+ +L ++ NLE L LS N++
Sbjct: 137 QSF-KLPEYFSNLTNLEHLDLSSNKI 161
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQ 91
L SL++L L+S IG+L +LKEL+++ N +LP NL +L+ LDLS
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPW-STGNFSSLKLLDLR-SCGFWGKVPHS 149
N T +R L + L+LS + + G F ++L +L VP
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218
Query: 150 I-GNFTQLQYLHLGSNNFSG-----DLLGPIGNLRSLEAINVAKCNFSGQITSSL 198
I T LQ + L +N + D L N S + AKC+ SG+ S+
Sbjct: 219 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSI 273
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
F ++P ++ FS + LDLSFN +S +F L++LDL C + + +
Sbjct: 20 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 77
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
L L L N LG L SL+ + + N + + +L L L++A N
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRL 240
+ +L ++ NLE L LS N++
Sbjct: 138 QSF-KLPEYFSNLTNLEHLDLSSNKI 162
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQ 91
L SL++L L+S IG+L +LKEL+++ N +LP NL +L+ LDLS
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPW-STGNFSSLKLLDLR-SCGFWGKVPHS 149
N T +R L + L+LS + + G F ++L +L VP
Sbjct: 160 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 219
Query: 150 I-GNFTQLQYLHLGSNNFSG-----DLLGPIGNLRSLEAINVAKCNFSGQITSSL 198
I T LQ + L +N + D L N S + AKC+ SG+ S+
Sbjct: 220 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSI 274
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 101/247 (40%), Gaps = 36/247 (14%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLS--SLKELDLSQNRFFGELPISMGNLG--SLKVL 87
+L SLE LDLS N LS + S + SLK LDLS N G + +S LG L+ L
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN---GVITMSSNFLGLEQLEHL 425
Query: 88 D-----LSQNGYFGELPTSIRNLF---------------------SLEKLDLSFNNFSGE 121
D L Q F S+RNL SLE L ++ N+F
Sbjct: 426 DFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484
Query: 122 F-PWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
F P +L LDL C P + + + LQ L++ NNF P L SL
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544
Query: 181 EAINVAKCNFSGQITSSLRNL-SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR 239
+ ++ + + L++ S L L+L QN + E L K+ L + + R
Sbjct: 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 604
Query: 240 LSVLTKA 246
+ T +
Sbjct: 605 MECATPS 611
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
F ++P ++ FS + LDLSFN +S +F L++LDL C + + +
Sbjct: 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 100
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
L L L N LG L SL+ + + N + + +L L L++A N
Sbjct: 101 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160
Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRL 240
+ +L ++ NLE L LS N++
Sbjct: 161 QS-FKLPEYFSNLTNLEHLDLSSNKI 185
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 26 LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLK 85
LP L +L LDLS L P + +LSSL+ L++S N FF L SL+
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 86 VLDLSQNGYFGELPTSIRNL-FSLEKLDLSFNNFS 119
VLD S N +++ SL L+L+ N+F+
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQ 91
L SL++L L+S IG+L +LKEL+++ N +LP NL +L+ LDLS
Sbjct: 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Query: 92 NGYFGELPTSIRNL 105
N T +R L
Sbjct: 183 NKIQSIYCTDLRVL 196
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 122/283 (43%), Gaps = 40/283 (14%)
Query: 24 GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPI-SMGNLG 82
ELP + L +L++L LSAN + IS N SL L + N EL + NL
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 83 SLKVLDLSQNGYFGELPTS------IRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLD 136
+L+ LDLS + ++ TS +RNL L+ L+LS+N + L+LLD
Sbjct: 351 NLRELDLSHD----DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 137 LRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITS 196
L FT+L+ D P NL L+ +N++
Sbjct: 407 LA--------------FTRLKV---------KDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443
Query: 197 SLRNLSQLTALDLAQNSY-RGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKL 255
L L L+L N + +G I+ L + LE L LS LS + + + T+ + +
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTSLKMM 502
Query: 256 KYIGLRSCNLTKFPNFLQNQHHLR--FMDLSDNRIQGKVPKWL 296
++ L LT + ++ HL+ +++L+ N I +P L
Sbjct: 503 NHVDLSHNRLTS--SSIEALSHLKGIYLNLASNHISIILPSLL 543
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 30/187 (16%)
Query: 59 SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF 118
S++ ++L ++ FF + L+ LDL+ + ELP+ + L +L+KL LS N F
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKF 313
Query: 119 SGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLR 178
S NF SL L ++ GN +L+ LG+ G + NL
Sbjct: 314 ENLCQISASNFPSLTHLSIK------------GNTKRLE---LGT--------GCLENLE 350
Query: 179 SLEAINVAKCNF--SGQITSSLRNLSQLTALDLAQNSYRGMIELDV-LLTSWKNLEFLGL 235
+L ++++ + S LRNLS L +L+L SY + L LE L L
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL---SYNEPLSLKTEAFKECPQLELLDL 407
Query: 236 SLNRLSV 242
+ RL V
Sbjct: 408 AFTRLKV 414
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
F ++P ++ FS + LDLSFN +S +F L++LDL C + + +
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
L L L N LG L SL+ + + N + + +L L L++A N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRL 240
+ +L ++ NLE L LS N++
Sbjct: 137 QSF-KLPEYFSNLTNLEHLDLSSNKI 161
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQ 91
L SL++L L+S IG+L +LKEL+++ N +LP NL +L+ LDLS
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 92 NGYFGELPTSIRNL 105
N T +R L
Sbjct: 159 NKIQSIYCTDLRVL 172
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Query: 39 LDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG-SLKVLDLSQNGYFGE 97
L++S N++S W I +LS L+ L +S NR L IS+ L+ LDLS N
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKL--- 81
Query: 98 LPTSIRNLFSLEKLDLSFNNFSG-----EFPWSTGNFSSLKLLDLRS 139
+ S +L+ LDLSFN F EF GN S LK L L +
Sbjct: 82 VKISCHPTVNLKHLDLSFNAFDALPICKEF----GNMSQLKFLGLST 124
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
F ++P ++ FS + LDLSFN +S +F L++LDL C + + +
Sbjct: 21 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 78
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
L L L N LG L SL+ + + N + + +L L L++A N
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLI 138
Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRL 240
+ +L ++ NLE L LS N++
Sbjct: 139 QSF-KLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQ 91
L SL++L L+S IG+L +LKEL+++ N +LP NL +L+ LDLS
Sbjct: 101 LSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPW-STGNFSSLKLLDLR-SCGFWGKVPHS 149
N T +R L + L+LS + + G F ++L +L VP
Sbjct: 161 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 220
Query: 150 I-GNFTQLQYLHLGSNNFSG-----DLLGPIGNLRSLEAINVAKCNFSGQITSSL 198
I T LQ + L +N + D L N S + AKC+ SG+ S+
Sbjct: 221 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSI 275
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 24/158 (15%)
Query: 29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
++ +L +L +LDL+ N +S+ P+S L+ L EL L N+ P + L +L L+
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 288
Query: 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGN------FSSLKLLDLRSCGF 142
L++N P I NL +L L L FNN S P S+ FS+ K+ D+
Sbjct: 289 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDV----- 341
Query: 143 WGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
S+ N T + +L G N S L P+ NL +
Sbjct: 342 -----SSLANLTNINWLSAGHNQISD--LTPLANLTRI 372
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 19/240 (7%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
NL +L L+LS+N +S +S L+SL++L+ N+ P + NL +L+ LD+S
Sbjct: 127 NLTNLNRLELSSNTISDISALS--GLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISS 181
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
N + + L +LE L + N S P G ++L L L G K ++
Sbjct: 182 NKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLN--GNQLKDIGTLA 235
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
+ T L L L +N S L P+ L L + + S S L L+ LT L+L +
Sbjct: 236 SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 291
Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
N + + ++ KNL +L L N +S ++ +S T Q+L + + +++ N
Sbjct: 292 NQLEDISPI----SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANL 347
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 30 VGNLHSLEELDLSANFLSSEWPISI-GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
+ NL +LE LD+S+N +S IS+ L++L+ L + N+ P LG L LD
Sbjct: 168 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP-----LGILTNLD 219
Query: 89 -LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP 147
LS NG + ++ +L +L LDL+ N S P S + L L L + P
Sbjct: 220 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP 277
Query: 148 HSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG-QITSSLRNLSQL 204
+ T L L L N + PI NL++L + + N S SSL L +L
Sbjct: 278 --LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 18/155 (11%)
Query: 29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
++ +L +L +LDL+ N +S+ P+S L+ L EL L N+ P + L +L L+
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLE 292
Query: 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW-GKVP 147
L++N P I NL +L L L FNN S P S+ L L+ F KV
Sbjct: 293 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS-------LTKLQRLFFANNKVS 343
Query: 148 H--SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
S+ N T + +L G N S L P+ NL +
Sbjct: 344 DVSSLANLTNINWLSAGHNQISD--LTPLANLTRI 376
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
NL +L L+LS+N +S +S L+SL++L N+ P + NL +L+ LD+S
Sbjct: 131 NLTNLNRLELSSNTISDISALS--GLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISS 185
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
N + + L +LE L + N S P G ++L L L G K ++
Sbjct: 186 NKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLN--GNQLKDIGTLA 239
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ 211
+ T L L L +N S L P+ L L + + S S L L+ LT L+L +
Sbjct: 240 SLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNE 295
Query: 212 NSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNF 271
N + + ++ KNL +L L N +S ++ +S T Q+L + + +++ N
Sbjct: 296 NQLEDISPI----SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANL 351
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 22/217 (10%)
Query: 30 VGNLHSLEELDLSANFLSSEWPISI-GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88
+ NL +LE LD+S+N +S IS+ L++L+ L + N+ P LG L LD
Sbjct: 172 LANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP-----LGILTNLD 223
Query: 89 -LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP 147
LS NG + ++ +L +L LDL+ N S P S + L L L + P
Sbjct: 224 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP 281
Query: 148 HSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTAL 207
+ T L L L N + PI NL++L + + N S S + +L++L L
Sbjct: 282 --LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRL 335
Query: 208 DLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLT 244
A N + L + N+ +L N++S LT
Sbjct: 336 FFANNKVSDVSS----LANLTNINWLSAGHNQISDLT 368
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 73 ELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSL 132
ELP + NL +L+VLDLS N LP + + F L+ F+N PW GN +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNL 318
Query: 133 KLL 135
+ L
Sbjct: 319 QFL 321
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 25 ELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL 84
ELP + NL +L LDLS N L+S P +G+ LK N LP GNL +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL 318
Query: 85 KVLDLSQN 92
+ L + N
Sbjct: 319 QFLGVEGN 326
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
F ++P ++ FS + LDLS+N +S +F L++LDL C + + +
Sbjct: 21 FYKIPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 78
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
L L L N LG L SL+ + + N + + +L L L++A N
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 138
Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRL 240
+ +L ++ NLE L LS N++
Sbjct: 139 QSF-KLPEYFSNLTNLEHLDLSSNKI 163
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQ 91
L SL++L L+S IG+L +LKEL+++ N +LP NL +L+ LDLS
Sbjct: 101 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPW-STGNFSSLKLLDLR-SCGFWGKVPHS 149
N T +R L + L+LS + + G F ++L +L VP
Sbjct: 161 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 220
Query: 150 I-GNFTQLQYLHLGSNNFSG-----DLLGPIGNLRSLEAINVAKCNFSGQITSSL 198
I T LQ + L +N + D L N S + AKC+ SG+ S+
Sbjct: 221 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSI 275
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
F ++P ++ FS + LDLS+N +S +F L++LDL C + + +
Sbjct: 20 FYKIPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 77
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214
L L L N LG L SL+ + + N + + +L L L++A N
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 215 RGMIELDVLLTSWKNLEFLGLSLNRL 240
+ +L ++ NLE L LS N++
Sbjct: 138 QSF-KLPEYFSNLTNLEHLDLSSNKI 162
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQ 91
L SL++L L+S IG+L +LKEL+++ N +LP NL +L+ LDLS
Sbjct: 100 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPW-STGNFSSLKLLDLR-SCGFWGKVPHS 149
N T +R L + L+LS + + G F ++L +L VP
Sbjct: 160 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 219
Query: 150 I-GNFTQLQYLHLGSNNFSG-----DLLGPIGNLRSLEAINVAKCNFSGQITSSL 198
I T LQ + L +N + D L N S + AKC+ SG+ S+
Sbjct: 220 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSI 274
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 6/216 (2%)
Query: 35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQN--RFFGELPISMGNLGSLKVLDLSQN 92
SL+ LDLS N + + +G L L+ LD + + E + + L +L LD+S
Sbjct: 79 SLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHT 136
Query: 93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEF-PWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
L SLE L ++ N+F F P +L LDL C P +
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNL-SQLTALDLA 210
+ + LQ L++ NNF P L SL+ ++ + + L++ S L L+L
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
Query: 211 QNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKA 246
QN + E L K+ L + + R+ T +
Sbjct: 257 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 26 LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLK 85
LP L +L LDLS L P + +LSSL+ L++S N FF L SL+
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 86 VLDLSQNGYFGELPTSIRNL-FSLEKLDLSFNNFS 119
VLD S N +++ SL L+L+ N+F+
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 36/249 (14%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLS 90
+L SLE LDLS N LSS G LSSLK L+L N + S+ NL +L+ L +
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI 150
F E IR + +F+G +SL L++++ S+
Sbjct: 132 NVETFSE----IRRI-----------DFAG--------LTSLNELEIKALSLRNYQSQSL 168
Query: 151 GNFTQLQY--LHLGSNNFSGDLLGPI-GNLRSLE--AINVAKCNFS----GQITSSLRNL 201
+ + + LHL + F ++ I ++R LE N+A+ FS +++S ++ L
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228
Query: 202 SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQ--KLKYIG 259
+ ++ L S+ +++L + +EF +LN L + SD S+ K++ +
Sbjct: 229 AFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287
Query: 260 LRSCNLTKF 268
+R ++ +F
Sbjct: 288 IRRLHIPQF 296
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 32 NLHSLEELDLSANFLSSEW---PISIGNLSSLKELDLSQNRF-----FGELPISMGNLGS 83
+L SLE LDLS N + E+ G SL+ L LSQN GE+ +++ NL S
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391
Query: 84 LKVLDLSQNGYFGELPTSIR 103
LD+S+N F +P S +
Sbjct: 392 ---LDISRNT-FHPMPDSCQ 407
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 114/249 (45%), Gaps = 36/249 (14%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLS 90
+L SLE LDLS N LSS G LSSLK L+L N + S+ NL +L+ L +
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 157
Query: 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI 150
F E IR + +F+G +SL L++++ S+
Sbjct: 158 NVETFSE----IRRI-----------DFAG--------LTSLNELEIKALSLRNYQSQSL 194
Query: 151 GNFTQLQY--LHLGSNNFSGDLLGPI-GNLRSLEA--INVAKCNFS----GQITSSLRNL 201
+ + + LHL + F ++ I ++R LE N+A+ FS +++S ++ L
Sbjct: 195 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 254
Query: 202 SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQ--KLKYIG 259
+ ++ L S+ +++L + +EF +LN L + SD S+ K++ +
Sbjct: 255 AFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 313
Query: 260 LRSCNLTKF 268
+R ++ +F
Sbjct: 314 IRRLHIPQF 322
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 32 NLHSLEELDLSANFLSSEW---PISIGNLSSLKELDLSQNRF-----FGELPISMGNLGS 83
+L SLE LDLS N + E+ G SL+ L LSQN GE+ +++ NL S
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 417
Query: 84 LKVLDLSQNGYFGELPTSIR 103
LD+S+N F +P S +
Sbjct: 418 ---LDISRNT-FHPMPDSCQ 433
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 33/142 (23%)
Query: 97 ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF-------WGKVPH- 148
++P+S +N+ DLSFN +S NFS L+ LDL C W + H
Sbjct: 29 DIPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82
Query: 149 ----------------SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNF-- 190
S T L+ L + PIG L +L+ +NVA NF
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH-NFIH 141
Query: 191 SGQITSSLRNLSQLTALDLAQN 212
S ++ + NL+ L +DL+ N
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 33/142 (23%)
Query: 97 ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF-------WGKVPH- 148
++P+S +N+ DLSFN +S NFS L+ LDL C W + H
Sbjct: 24 DIPSSTKNI------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 77
Query: 149 ----------------SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNF-- 190
S T L+ L + PIG L +L+ +NVA NF
Sbjct: 78 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH-NFIH 136
Query: 191 SGQITSSLRNLSQLTALDLAQN 212
S ++ + NL+ L +DL+ N
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYN 158
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 2/177 (1%)
Query: 52 ISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL 111
I G ++K LDLS NR + +L+ L L+ NG S +L SLE L
Sbjct: 46 IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105
Query: 112 DLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI-GNFTQLQYLHLGS-NNFSGD 169
DLS+N S SSL L+L + S+ + T+LQ L +G+ + F+
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 170 LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTS 226
L LE + + + SL+++ ++ L L + ++E+ V +TS
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 2/177 (1%)
Query: 52 ISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL 111
I G ++K LDLS NR + +L+ L L+ NG S +L SLE L
Sbjct: 20 IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 79
Query: 112 DLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI-GNFTQLQYLHLGS-NNFSGD 169
DLS+N S SSL L+L + S+ + T+LQ L +G+ + F+
Sbjct: 80 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 139
Query: 170 LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTS 226
L LE + + + SL+++ ++ L L + ++E+ V +TS
Sbjct: 140 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 196
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 58 SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGY--FGELPTSIRNLFSLEKLDLSF 115
SS L+ +QN F + L L+ L L +NG F ++ +N+ SLE LD+S
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 116 NNF-SGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPI 174
N+ S + + S+ +L+L S G V + ++ LH NN + +
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSIPKDV 469
Query: 175 GNLRSLEAINVA 186
+L++L+ +NVA
Sbjct: 470 THLQALQELNVA 481
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNLGSLKVLDLSQNGYF 95
+ L LS N +S I LS L+ L LS NR + + + N L+ LD+S N
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVSHNRLQ 113
Query: 96 GELPTSIRNLFSLEKLDLSFNNF-----SGEFPWSTGNFSSLKLLDLRSCGF 142
S + SL LDLSFN+F EF GN + L L L + F
Sbjct: 114 N---ISCCPMASLRHLDLSFNDFDVLPVCKEF----GNLTKLTFLGLSAAKF 158
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 32 NLHSLEELDLSANFLSSE-WPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS 90
N+ SLE LD+S N L+S + + S+ L+LS N G + + +KVLDL
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL- 457
Query: 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI 150
N +P + +L +L++L+++ N +SL+ + L + P
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP--- 514
Query: 151 GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL 198
++YL N SG + G++ A + AKC+ SG+ S+
Sbjct: 515 ----GIRYLSEWINKHSGVVRNSAGSV----APDSAKCSGSGKPVRSI 554
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 27 PVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKV 86
P + NLHSL NF+SSE + + N L+ LDLS N +L +L+V
Sbjct: 60 PTRLTNLHSLLLSHNHLNFISSEAFVPVPN---LRYLDLSSNHLHTLDEFLFSDLQALEV 116
Query: 87 LDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP---WSTGN-FSSLKLLDLRS 139
L L N + ++ L+KL LS N S FP GN L LLDL S
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSS 172
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 1/151 (0%)
Query: 36 LEELDLSANF-LSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGY 94
LE+LDLS N L S P + L L L L + P L +L+ L L N
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
+ R+L +L L L N S + SL L L PH+ +
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINV 185
+L L+L +NN S + LR+L+ + +
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRL 231
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
+L +L L L N +SS + L SL L L QNR P + +LG L L L
Sbjct: 150 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 209
Query: 92 NGYFGELPT-SIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG 144
N LPT ++ L +L+ L L+ N PW + D R+ W
Sbjct: 210 NN-LSALPTEALAPLRALQYLRLNDN------PW---------VCDCRARPLWA 247
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 1/151 (0%)
Query: 36 LEELDLSANF-LSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGY 94
LE+LDLS N L S P + L L L L + P L +L+ L L N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 95 FGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT 154
+ R+L +L L L N S + SL L L PH+ +
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 155 QLQYLHLGSNNFSGDLLGPIGNLRSLEAINV 185
+L L+L +NN S + LR+L+ + +
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRL 232
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
+L +L L L N +SS + L SL L L QNR P + +LG L L L
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 92 NGYFGELPT-SIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG 144
N LPT ++ L +L+ L L+ N PW + D R+ W
Sbjct: 211 NN-LSALPTEALAPLRALQYLRLNDN------PW---------VCDCRARPLWA 248
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 23/171 (13%)
Query: 75 PISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGN------ 128
P L +L +LDLS N + L LE LDL NN + W N
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL--WKHANPGGPIY 530
Query: 129 ----FSSLKLLDLRSCGFWGKVPHSI-GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
S L +L+L S GF ++P + + +L+ + LG NN + N SL+++
Sbjct: 531 FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589
Query: 184 NVAKCNFSGQITSSLRNL-----SQLTALDLAQNSYRGMIELDVLLTSWKN 229
N+ K ITS + + LT LD+ N + E +W N
Sbjct: 590 NLQK----NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 23/171 (13%)
Query: 75 PISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGN------ 128
P L +L +LDLS N + L LE LDL NN + W N
Sbjct: 483 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL--WKHANPGGPIY 540
Query: 129 ----FSSLKLLDLRSCGFWGKVPHSI-GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
S L +L+L S GF ++P + + +L+ + LG NN + N SL+++
Sbjct: 541 FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 599
Query: 184 NVAKCNFSGQITSSLRNL-----SQLTALDLAQNSYRGMIELDVLLTSWKN 229
N+ K ITS + + LT LD+ N + E +W N
Sbjct: 600 NLQK----NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 646
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 23/171 (13%)
Query: 75 PISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGN------ 128
P L +L +LDLS N + L LE LDL NN + W N
Sbjct: 478 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL--WKHANPGGPIY 535
Query: 129 ----FSSLKLLDLRSCGFWGKVPHSI-GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAI 183
S L +L+L S GF ++P + + +L+ + LG NN + N SL+++
Sbjct: 536 FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 594
Query: 184 NVAKCNFSGQITSSLRNL-----SQLTALDLAQNSYRGMIELDVLLTSWKN 229
N+ K ITS + + LT LD+ N + E +W N
Sbjct: 595 NLQK----NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 641
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRF----FGELPISMGNLGSLKVLD 88
L L+ L L+ N+L+S P +L++L+ L L+ NR +LP +L++LD
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEILD 532
Query: 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWST 126
+S+N P SL LD++ N F E ST
Sbjct: 533 ISRNQLLAPNPDV---FVSLSVLDITHNKFICECELST 567
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 76 ISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLL 135
I G SL L L N S++ L +L KL LSFN+ S S N L+ L
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 136 DLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168
L + KVP + + +Q ++L +NN S
Sbjct: 246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 76 ISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLL 135
I G SL L L N S++ L +L KL LSFN+ S S N L+ L
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 136 DLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168
L + KVP + + +Q ++L +NN S
Sbjct: 246 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
NL + EL+LS N L + +I L S+K LDL+ + P + L +L+VL L
Sbjct: 89 NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL 144
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
N P + L +L+ L + N + P + N S KL LR+ +
Sbjct: 145 NQITNISP--LAGLTNLQYLSIGNNQVNDLTPLA--NLS--KLTTLRADDNKISDISPLA 198
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSL 180
+ L +HL N S + P+ NL +L
Sbjct: 199 SLPNLIEVHLKDNQISD--VSPLANLSNL 225
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 135 LDLRSCGFWGKVPHSIGNFTQLQYLHLGSN--NFSGDLLGPIG 175
L L G G+VP +IG T+L+ L LGS+ + L GP G
Sbjct: 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKG 128
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 1/118 (0%)
Query: 52 ISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL 111
+ G +S + + L NR S + +L +L L N G + L LE+L
Sbjct: 25 VPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQL 84
Query: 112 DLSFN-NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168
DLS N P + L L L CG P LQYL+L NN
Sbjct: 85 DLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 203 QLTALDLAQNSYR--GMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGL 260
+L LDL N++ G L + L SW NL LGL+ LS A KL+ IGL
Sbjct: 216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 275
Query: 261 RSCNL 265
++ L
Sbjct: 276 QTLRL 280
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 203 QLTALDLAQNSYR--GMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGL 260
+L LDL N++ G L + L SW NL LGL+ LS A KL+ IGL
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276
Query: 261 RSCNL 265
++ L
Sbjct: 277 QTLRL 281
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Query: 60 LKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS 119
+ EL L N+F +P + N L ++DLS N S N+ L L LS+N
Sbjct: 33 VTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 120 GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD 169
P + SL+LL L + + + L +L +G+N D
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 26 LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLK 85
+P + N L +DLS N +S+ S N++ L L LS NR P + L SL+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 86 VLDLSQN 92
+L L N
Sbjct: 106 LLSLHGN 112
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 135 LDLRSCGFWGKVPHSIGNFTQLQYLHLG--SNNFSGDLLG 172
L L G G+VP +IG T+L+ L G S SG L G
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 29 SVGNLHSLEELDLSANFLSSEWPISI-GNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87
+V +L L+ L++ +N +S IS+ NLS L L L+ N+ E +G L +L L
Sbjct: 260 AVKDLTKLKXLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTL 316
Query: 88 DLSQNGYFGELPTSIRNLFSLEKLD 112
LSQN T IR L SL K D
Sbjct: 317 FLSQNHI-----TDIRPLASLSKXD 336
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 12/171 (7%)
Query: 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN 92
L L+ELDLS N LS+ P S L L++L + Q++ + NL SL ++L+ N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 93 GYFGELPTSI-RNLFSLEKLDLSFN--NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHS 149
LP + L LE++ L N N + + W + + + C P+
Sbjct: 266 N-LTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNL 324
Query: 150 IGNFTQLQYLHLGSNNFSG---DLLGPIGNLRSLEAINVA-KCNFSGQITS 196
G + L N F+ ++ P +L E + KC S +TS
Sbjct: 325 KGRYIG----ELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTS 371
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 12/162 (7%)
Query: 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91
NL + EL+LS N L + +I L S+K LDL+ + P + L +L+VL L
Sbjct: 83 NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL 138
Query: 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151
N P + L +L+ L + S P + N S L L P +
Sbjct: 139 NQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA--NLSKLTTLKADDNKISDISP--LA 192
Query: 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ 193
+ L +HL +N S + P+ N +L + + + Q
Sbjct: 193 SLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQ 232
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRF-------FGELPISMG-NLGSL 84
L SL L+L N+L+ + LS L+EL L N F +P M +LG L
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181
Query: 85 KVLDLSQNGYF----------------GELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGN 128
K L+ G F ++P ++ L LE+L++S N+F P S
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 129 FSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG---DLLGPIGNLRSLE 181
SSLK L + + ++ L L+L NN S DL P+ L L
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,395,482
Number of Sequences: 62578
Number of extensions: 488300
Number of successful extensions: 1333
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 252
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)