Query 038739
Match_columns 477
No_of_seqs 675 out of 4126
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:48:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.1E-49 1.1E-53 433.5 29.6 395 3-404 157-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-46 2.5E-51 414.8 28.8 396 2-406 109-568 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.7E-39 3.8E-44 309.4 4.7 368 12-394 80-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.6E-38 3.4E-43 302.9 6.3 378 12-406 54-437 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.1E-37 2.4E-42 285.0 -14.0 367 3-398 84-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 2.3E-35 5.1E-40 283.3 -5.7 362 9-396 6-373 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 2.2E-33 4.7E-38 269.8 -6.9 343 32-397 5-351 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 1.1E-33 2.4E-38 258.9 -14.4 263 12-288 47-309 (565)
9 KOG0618 Serine/threonine phosp 99.9 2.2E-29 4.8E-34 252.5 -0.6 368 10-397 21-419 (1081)
10 KOG0618 Serine/threonine phosp 99.9 2.1E-30 4.5E-35 259.9 -9.0 372 8-396 43-487 (1081)
11 PLN03210 Resistant to P. syrin 99.9 2.2E-25 4.7E-30 246.9 28.3 341 26-396 550-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1E-23 2.2E-28 233.6 25.4 337 4-371 552-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 3E-27 6.4E-32 216.6 -3.3 369 2-395 61-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 1.7E-23 3.6E-28 216.5 19.3 266 59-382 202-467 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 1.7E-23 3.7E-28 216.4 18.7 265 82-405 201-465 (788)
16 KOG4237 Extracellular matrix p 99.9 2.6E-24 5.7E-29 197.3 -4.3 114 4-117 85-199 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 2E-20 4.3E-25 194.9 13.6 244 107-400 200-447 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.5E-20 3.2E-25 195.9 12.5 181 11-215 179-359 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 1E-20 2.2E-25 182.7 1.3 278 14-313 2-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 1E-20 2.2E-25 182.6 1.0 280 38-348 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 7.3E-20 1.6E-24 149.8 -5.7 155 8-167 31-186 (264)
22 KOG0617 Ras suppressor protein 99.7 7.9E-19 1.7E-23 143.8 -5.7 165 30-200 29-194 (264)
23 PLN03150 hypothetical protein; 99.4 1.9E-12 4.1E-17 134.8 10.2 110 278-399 420-529 (623)
24 KOG3207 Beta-tubulin folding c 99.3 2.6E-13 5.7E-18 127.2 2.3 210 177-399 120-340 (505)
25 COG4886 Leucine-rich repeat (L 99.3 3.3E-12 7.3E-17 126.9 8.2 175 55-239 113-288 (394)
26 COG4886 Leucine-rich repeat (L 99.3 4.1E-12 9E-17 126.3 5.6 199 14-221 97-296 (394)
27 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.8E-18 133.2 -5.2 174 9-191 74-247 (722)
28 KOG1909 Ran GTPase-activating 99.2 5E-13 1.1E-17 122.1 -1.9 204 30-245 26-258 (382)
29 KOG1259 Nischarin, modulator o 99.2 3E-12 6.5E-17 114.6 1.9 127 154-289 284-412 (490)
30 KOG3207 Beta-tubulin folding c 99.2 1.8E-12 3.9E-17 121.7 -0.5 209 56-291 119-341 (505)
31 PF14580 LRR_9: Leucine-rich r 99.2 7.7E-12 1.7E-16 107.2 3.1 128 30-162 15-148 (175)
32 KOG0532 Leucine-rich repeat (L 99.2 4.3E-13 9.4E-18 129.6 -5.1 197 33-238 74-270 (722)
33 KOG1259 Nischarin, modulator o 99.2 5.5E-12 1.2E-16 112.9 1.9 135 128-270 282-416 (490)
34 PLN03150 hypothetical protein; 99.2 4.1E-11 8.9E-16 124.9 8.5 110 35-144 419-529 (623)
35 KOG1909 Ran GTPase-activating 99.2 3.1E-12 6.6E-17 117.0 -0.1 162 6-167 26-226 (382)
36 PF14580 LRR_9: Leucine-rich r 99.1 8.2E-11 1.8E-15 100.9 5.6 81 130-215 19-101 (175)
37 KOG4658 Apoptotic ATPase [Sign 99.1 5.2E-11 1.1E-15 126.9 3.9 127 10-139 523-651 (889)
38 KOG0531 Protein phosphatase 1, 99.0 1.4E-11 3.1E-16 122.7 -2.2 268 10-295 49-324 (414)
39 KOG4658 Apoptotic ATPase [Sign 99.0 1.3E-10 2.8E-15 123.9 4.6 273 32-314 521-806 (889)
40 KOG0531 Protein phosphatase 1, 99.0 1.9E-11 4.1E-16 121.9 -2.2 266 34-318 49-321 (414)
41 PF13855 LRR_8: Leucine rich r 99.0 3.7E-10 8E-15 79.7 3.1 60 10-69 1-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.9 6.4E-10 1.4E-14 78.5 3.1 60 34-93 1-60 (61)
43 KOG1859 Leucine-rich repeat pr 98.6 9E-10 1.9E-14 109.8 -6.6 126 254-397 165-291 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.6 9.7E-10 2.1E-14 98.7 -6.4 158 154-313 185-349 (419)
45 KOG2982 Uncharacterized conser 98.6 1.4E-08 3.1E-13 91.3 0.7 188 80-291 69-264 (418)
46 KOG2982 Uncharacterized conser 98.6 1.2E-08 2.6E-13 91.7 -0.1 84 275-393 198-287 (418)
47 KOG1859 Leucine-rich repeat pr 98.5 2.8E-09 6.1E-14 106.3 -5.7 127 107-240 165-291 (1096)
48 KOG2120 SCF ubiquitin ligase, 98.5 4.6E-09 1E-13 94.4 -5.2 177 107-286 186-373 (419)
49 KOG4579 Leucine-rich repeat (L 98.5 1.4E-08 3.1E-13 80.9 -2.1 112 254-405 54-166 (177)
50 KOG4579 Leucine-rich repeat (L 98.4 5.2E-08 1.1E-12 77.7 -0.9 105 254-397 28-135 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.2 1.4E-07 2.9E-12 84.0 -1.2 86 9-94 29-132 (388)
52 COG5238 RNA1 Ran GTPase-activa 98.2 7.2E-07 1.6E-11 79.5 1.6 18 275-292 271-288 (388)
53 PF12799 LRR_4: Leucine Rich r 98.1 4.5E-06 9.8E-11 53.9 4.0 37 10-47 1-37 (44)
54 PF12799 LRR_4: Leucine Rich r 98.0 5.5E-06 1.2E-10 53.5 3.3 37 254-290 2-38 (44)
55 KOG1644 U2-associated snRNP A' 98.0 1E-05 2.3E-10 69.2 5.2 86 198-285 60-149 (233)
56 PRK15386 type III secretion pr 98.0 2.8E-05 6.1E-10 75.3 8.7 135 224-395 48-187 (426)
57 PF13306 LRR_5: Leucine rich r 98.0 2.5E-05 5.5E-10 64.2 7.3 84 5-91 7-90 (129)
58 PRK15386 type III secretion pr 97.9 2.8E-05 6E-10 75.3 7.8 136 7-165 49-188 (426)
59 PF13306 LRR_5: Leucine rich r 97.9 4.3E-05 9.3E-10 62.8 7.0 123 28-156 6-128 (129)
60 KOG1644 U2-associated snRNP A' 97.8 4E-05 8.7E-10 65.7 6.5 104 157-263 45-150 (233)
61 KOG3665 ZYG-1-like serine/thre 97.8 6.3E-06 1.4E-10 86.3 0.4 61 251-314 171-232 (699)
62 KOG4341 F-box protein containi 97.6 2.1E-06 4.4E-11 81.2 -5.4 36 337-372 402-438 (483)
63 KOG3665 ZYG-1-like serine/thre 97.6 2.6E-05 5.7E-10 81.7 2.0 134 58-193 122-265 (699)
64 KOG4341 F-box protein containi 97.5 2.5E-06 5.5E-11 80.6 -5.8 280 107-396 139-437 (483)
65 KOG2739 Leucine-rich acidic nu 97.5 6E-05 1.3E-09 67.4 2.1 112 26-139 35-152 (260)
66 KOG2739 Leucine-rich acidic nu 97.4 9.5E-05 2.1E-09 66.1 3.2 107 177-285 42-152 (260)
67 KOG1947 Leucine rich repeat pr 97.0 6.2E-05 1.3E-09 76.9 -2.8 16 198-213 358-373 (482)
68 KOG1947 Leucine rich repeat pr 97.0 7E-05 1.5E-09 76.5 -3.0 80 174-265 358-439 (482)
69 KOG2123 Uncharacterized conser 96.7 8.9E-05 1.9E-09 66.7 -4.1 11 272-282 113-123 (388)
70 KOG2123 Uncharacterized conser 96.5 0.00014 3.1E-09 65.4 -4.1 101 201-308 18-123 (388)
71 PF00560 LRR_1: Leucine Rich R 96.2 0.0016 3.5E-08 34.9 0.5 20 361-381 1-20 (22)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0075 1.6E-07 32.3 1.0 12 36-47 2-13 (22)
73 KOG4308 LRR-containing protein 94.3 0.00015 3.3E-09 72.8 -13.4 182 36-217 89-305 (478)
74 PF13504 LRR_7: Leucine rich r 94.3 0.024 5.1E-07 28.1 1.1 13 361-373 2-14 (17)
75 KOG4308 LRR-containing protein 94.2 0.00026 5.6E-09 71.1 -12.1 185 60-244 89-306 (478)
76 PF13504 LRR_7: Leucine rich r 93.6 0.048 1E-06 27.0 1.4 12 255-266 3-14 (17)
77 KOG0473 Leucine-rich repeat pr 93.2 0.0011 2.3E-08 58.4 -8.3 89 28-119 36-124 (326)
78 PF13516 LRR_6: Leucine Rich r 92.2 0.04 8.8E-07 30.1 -0.0 19 360-378 2-20 (24)
79 smart00370 LRR Leucine-rich re 91.3 0.16 3.5E-06 28.2 1.8 19 359-378 1-19 (26)
80 smart00369 LRR_TYP Leucine-ric 91.3 0.16 3.5E-06 28.2 1.8 19 359-378 1-19 (26)
81 KOG0473 Leucine-rich repeat pr 90.3 0.0042 9.1E-08 54.8 -7.9 89 52-143 36-124 (326)
82 smart00370 LRR Leucine-rich re 89.2 0.35 7.6E-06 26.8 2.1 14 10-23 2-15 (26)
83 smart00369 LRR_TYP Leucine-ric 89.2 0.35 7.6E-06 26.8 2.1 14 10-23 2-15 (26)
84 KOG4242 Predicted myosin-I-bin 88.8 2.4 5.2E-05 41.9 8.5 88 203-290 355-454 (553)
85 KOG3864 Uncharacterized conser 87.3 0.067 1.5E-06 46.4 -2.5 82 34-115 101-185 (221)
86 KOG3864 Uncharacterized conser 86.7 0.21 4.6E-06 43.4 0.1 35 179-213 102-136 (221)
87 KOG3763 mRNA export factor TAP 85.7 0.61 1.3E-05 46.7 2.7 82 200-282 216-307 (585)
88 smart00364 LRR_BAC Leucine-ric 82.6 0.88 1.9E-05 25.3 1.4 18 360-378 2-19 (26)
89 smart00365 LRR_SD22 Leucine-ri 81.7 1.2 2.6E-05 24.8 1.7 15 359-373 1-15 (26)
90 smart00368 LRR_RI Leucine rich 78.3 1.7 3.7E-05 24.6 1.7 15 360-374 2-16 (28)
91 KOG3763 mRNA export factor TAP 51.4 10 0.00022 38.5 2.1 67 224-291 214-285 (585)
92 smart00367 LRR_CC Leucine-rich 42.5 16 0.00035 20.0 1.2 11 34-44 2-12 (26)
93 TIGR00864 PCC polycystin catio 38.0 20 0.00043 43.8 2.1 32 342-373 1-32 (2740)
94 PF15179 Myc_target_1: Myc tar 36.7 7.6 0.00016 33.0 -1.0 32 428-460 17-48 (197)
95 COG5336 Uncharacterized protei 34.3 22 0.00048 27.5 1.2 25 435-459 51-77 (116)
96 COG3105 Uncharacterized protei 33.3 19 0.00041 28.8 0.7 15 437-451 12-26 (138)
97 PF15050 SCIMP: SCIMP protein 33.2 22 0.00048 27.9 1.0 31 441-473 18-48 (133)
98 PF06040 Adeno_E3: Adenovirus 31.7 24 0.00052 27.4 1.0 25 433-457 86-111 (127)
99 KOG4242 Predicted myosin-I-bin 31.3 44 0.00096 33.4 2.9 36 276-315 165-200 (553)
100 PRK10692 hypothetical protein; 31.0 30 0.00065 25.5 1.3 15 454-468 71-85 (92)
101 PF06295 DUF1043: Protein of u 30.9 21 0.00045 29.0 0.6 13 438-450 4-16 (128)
102 PF12297 EVC2_like: Ellis van 30.9 27 0.00059 34.2 1.5 33 433-469 67-99 (429)
103 PRK11677 hypothetical protein; 30.5 5 0.00011 32.7 -3.0 15 438-452 8-22 (134)
104 PF05808 Podoplanin: Podoplani 29.8 17 0.00038 30.4 0.0 31 432-462 126-156 (162)
105 PF10762 DUF2583: Protein of u 27.4 39 0.00086 24.7 1.4 14 454-467 71-84 (89)
106 PF04418 DUF543: Domain of unk 27.0 45 0.00098 24.2 1.7 17 437-453 34-50 (75)
107 TIGR00864 PCC polycystin catio 24.6 47 0.001 40.8 2.2 32 308-349 1-32 (2740)
108 PTZ00382 Variant-specific surf 24.1 13 0.00028 28.5 -1.6 7 442-448 79-85 (96)
109 COG4575 ElaB Uncharacterized c 22.2 10 0.00022 29.1 -2.5 22 425-446 80-101 (104)
110 COG3216 Uncharacterized protei 21.2 22 0.00048 30.2 -0.9 33 428-461 134-167 (184)
111 PF01102 Glycophorin_A: Glycop 20.8 44 0.00096 26.8 0.7 13 438-450 67-79 (122)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.1e-49 Score=433.50 Aligned_cols=395 Identities=33% Similarity=0.465 Sum_probs=200.9
Q ss_pred CccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739 3 PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG 82 (477)
Q Consensus 3 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 82 (477)
|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+++++
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECC
Q 038739 83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLG 162 (477)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 162 (477)
+|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|+++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcc
Q 038739 163 SNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSV 242 (477)
Q Consensus 163 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~ 242 (477)
+|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+..
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~--~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG--LCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh--HhCcCCCCEEECcCCEecc
Confidence 44444444444444444444554444444444444444444444554444444333322 2333333333333332211
Q ss_pred ccccCCc-cCcCcccEEEccCCCCC-CcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEec----------
Q 038739 243 LTKATSD-TTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFS---------- 310 (477)
Q Consensus 243 ~~~~~~~-~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls---------- 310 (477)
..+.. ..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+. .+++|+.|+++
T Consensus 395 --~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 395 --EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW--DMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred --cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc--cCCCCcEEECcCceeeeecCc
Confidence 11111 13445555555555552 3455555555555555555555555544433 34444444444
Q ss_pred -------------CCcccccCCCCc---------ccCCC--CCCCCCC---CCccceeecCCCcCccCCChhhhccCCCC
Q 038739 311 -------------HNLLTGFDQHPV---------VLPGN--KGPLPVP---PPGTITYLASNNSLTGEIPSWICNLNILE 363 (477)
Q Consensus 311 -------------~N~l~~~~~~~~---------~l~~n--~~~~~~~---~~~l~~L~ls~n~l~~~~p~~~~~l~~L~ 363 (477)
+|++++..+..+ ++++| .+.+|.. +++|+.|++++|.+++.+|..+..+++|+
T Consensus 471 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 550 (968)
T PLN00113 471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550 (968)
T ss_pred ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence 444444333221 34444 3344432 35677777777777777777777777777
Q ss_pred eEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCC
Q 038739 364 SLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCE 404 (477)
Q Consensus 364 ~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~ 404 (477)
.|||++|++++.+|..+..++ +|++|++++|++.|.+|..
T Consensus 551 ~L~Ls~N~l~~~~p~~l~~l~-~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 551 QLDLSQNQLSGEIPKNLGNVE-SLVQVNISHNHLHGSLPST 590 (968)
T ss_pred EEECCCCcccccCChhHhcCc-ccCEEeccCCcceeeCCCc
Confidence 777777777777777777776 7777777777777777754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-46 Score=414.78 Aligned_cols=396 Identities=36% Similarity=0.502 Sum_probs=239.9
Q ss_pred CCccCC-CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739 2 IPSSLG-NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGN 80 (477)
Q Consensus 2 lp~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 80 (477)
+|..+. ++++|++|++++|.+++.+|. ..+++|++|++++|.+++..|..++++++|++|++++|.+.+.+|..+.+
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 186 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186 (968)
T ss_pred CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh
Confidence 344432 666666666666666555442 33455555555555555555555555555555555555555555555555
Q ss_pred CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEE
Q 038739 81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLH 160 (477)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 160 (477)
+++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|+
T Consensus 187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 55555555555555555555555555555555555555555555555555555555555555444555555555555555
Q ss_pred CCCCcCCCcCCcCCCCCCCCCEEEcc------------------------CCccccccchhhhcCCCCCEEeCcCCcCcc
Q 038739 161 LGSNNFSGDLLGPIGNLRSLEAINVA------------------------KCNFSGQITSSLRNLSQLTALDLAQNSYRG 216 (477)
Q Consensus 161 l~~n~l~~~~~~~l~~l~~L~~L~l~------------------------~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 216 (477)
+++|.+.+..|..+..+++|++|+++ +|.+++..|..+..+++|+.|++++|.+.+
T Consensus 267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 55555444444444444444444444 444444444444445555555555555444
Q ss_pred ccchhhhhcCCCCCCEEeCCCCCCccccccCCc-cCcCcccEEEccCCCC-CCcchhhhcCCCcCEEeccCCcccccCCc
Q 038739 217 MIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD-TTSQKLKYIGLRSCNL-TKFPNFLQNQHHLRFMDLSDNRIQGKVPK 294 (477)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l-~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~ 294 (477)
..+.. +..+++|+.|++++|.+... .+.. ..+++|+.|++++|.+ ..+|..+..+++|+.|++++|++++.+|.
T Consensus 347 ~~p~~--l~~~~~L~~L~Ls~n~l~~~--~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~ 422 (968)
T PLN00113 347 EIPKN--LGKHNNLTVLDLSTNNLTGE--IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422 (968)
T ss_pred cCChH--HhCCCCCcEEECCCCeeEee--CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh
Confidence 44333 44455555555555533221 1111 1345667777777766 35677777888888888888888888888
Q ss_pred cCCcccCCCCCeEEecCCcccccCCCCc--------------------------------ccCCC--CCCCCCC---CCc
Q 038739 295 WLLDPNMQNLNGFNFSHNLLTGFDQHPV--------------------------------VLPGN--KGPLPVP---PPG 337 (477)
Q Consensus 295 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------------------~l~~n--~~~~~~~---~~~ 337 (477)
.+. .++.|+.|++++|++++..+..+ ++++| .+.+|.. +++
T Consensus 423 ~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 423 EFT--KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred hHh--cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc
Confidence 776 78889999999998887655321 23333 2333322 346
Q ss_pred cceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCCC
Q 038739 338 TITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESG 406 (477)
Q Consensus 338 l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~ 406 (477)
|+.|++++|.+++.+|..+.++++|++|+|++|++++.+|..|..++ +|++|++++|+++|.+|....
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP-VLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc-cCCEEECCCCcccccCChhHh
Confidence 77788888888888888888888888888888888888888888888 889999999999888887654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-39 Score=309.39 Aligned_cols=368 Identities=23% Similarity=0.202 Sum_probs=262.6
Q ss_pred CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739 12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91 (477)
Q Consensus 12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 91 (477)
-+.||+++|.+....+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+....+.+..++.|+.||||.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 456778888777777777777788888888777776 5565445555677888888877766666777777788888888
Q ss_pred CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCC
Q 038739 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL 171 (477)
Q Consensus 92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 171 (477)
|.++..--..|..-.++++|+|++|.|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.-.--
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 77765544566666677888888888776666677777777788888887766666677777888888888877764434
Q ss_pred cCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccC
Q 038739 172 GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTT 251 (477)
Q Consensus 172 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~ 251 (477)
-.|..+++|+.|.+..|.+.......|..+.++++|+|+.|++......+ +-+++.|+.|++|+|.|..+..... ..
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~--lfgLt~L~~L~lS~NaI~rih~d~W-sf 315 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW--LFGLTSLEQLDLSYNAIQRIHIDSW-SF 315 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc--ccccchhhhhccchhhhheeecchh-hh
Confidence 45777777888888877777666667777778888888888777665544 6677778888888887665543332 24
Q ss_pred cCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCC
Q 038739 252 SQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGP 330 (477)
Q Consensus 252 ~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~ 330 (477)
+++|++|+|++|.|++++ ..|..+..|++|+|++|.+....-..|. .+.+|++|||++|.+++.+.+.. .
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~--~lssL~~LdLr~N~ls~~IEDaa-------~ 386 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV--GLSSLHKLDLRSNELSWCIEDAA-------V 386 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH--HhhhhhhhcCcCCeEEEEEecch-------h
Confidence 567888888888887775 5677777788888888877744444444 67778888888888777654431 2
Q ss_pred CCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCC
Q 038739 331 LPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQG 394 (477)
Q Consensus 331 ~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~ 394 (477)
....+++|+.|++.+|++.......|.++..|++|||.+|.|...-|..|.++ .|+.|-+..
T Consensus 387 ~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m--~Lk~Lv~nS 448 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM--ELKELVMNS 448 (873)
T ss_pred hhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc--hhhhhhhcc
Confidence 23447778888888888875555677888888888888888877777777766 466665543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-38 Score=302.87 Aligned_cols=378 Identities=22% Similarity=0.183 Sum_probs=319.5
Q ss_pred CCEEEccCCCCCCCccccccCC--CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeC
Q 038739 12 LLHLDLSLNELQGELPVSVGNL--HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDL 89 (477)
Q Consensus 12 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 89 (477)
-+.||.+++.+.......+.++ +.-+.|++++|++..+.+..|.++++|+++++.+|.++ .+|.......+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3567888888774433333332 34567999999999988889999999999999999998 78876666778999999
Q ss_pred cCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCc
Q 038739 90 SQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD 169 (477)
Q Consensus 90 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 169 (477)
.+|.|+..-.+.+..++.|+.||||.|.++.....+|..-.++++|+|++|.++......|..+.+|..|.|+.|+++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 99999888888899999999999999999955556777778999999999999888888999999999999999999988
Q ss_pred CCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCc
Q 038739 170 LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD 249 (477)
Q Consensus 170 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~ 249 (477)
.+..|.++++|+.|++..|.+.-.--..|.++++|+.|.|..|.+.....-. |-.+.++++|+|+.|++..+......
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA--FYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc--eeeecccceeecccchhhhhhccccc
Confidence 8888999999999999999997554668899999999999999998776544 88899999999999987766544322
Q ss_pred cCcCcccEEEccCCCCCCc-chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCC
Q 038739 250 TTSQKLKYIGLRSCNLTKF-PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK 328 (477)
Q Consensus 250 ~~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~ 328 (477)
.+..|+.|+++.|.|..+ ++.+..+++|+.|+|++|+|+...+..+. .+..|++|+|++|.+...-...
T Consensus 291 -gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~--~L~~Le~LnLs~Nsi~~l~e~a------- 360 (873)
T KOG4194|consen 291 -GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR--VLSQLEELNLSHNSIDHLAEGA------- 360 (873)
T ss_pred -ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH--HHHHhhhhcccccchHHHHhhH-------
Confidence 577899999999999877 47788899999999999999988888877 8999999999999998653322
Q ss_pred CCCCCCCCccceeecCCCcCccCCC---hhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCC
Q 038739 329 GPLPVPPPGTITYLASNNSLTGEIP---SWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCES 405 (477)
Q Consensus 329 ~~~~~~~~~l~~L~ls~n~l~~~~p---~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~ 405 (477)
...+.+|+.||+++|.++..|. ..|.++++|+.|++.+|++....-..|..++ .|+.|||.+|.|...-|..+
T Consensus 361 ---f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~-~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 361 ---FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLE-ALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred ---HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCc-ccceecCCCCcceeeccccc
Confidence 2457899999999999987654 4578899999999999999954446899998 99999999999866555544
Q ss_pred C
Q 038739 406 G 406 (477)
Q Consensus 406 ~ 406 (477)
.
T Consensus 437 e 437 (873)
T KOG4194|consen 437 E 437 (873)
T ss_pred c
Confidence 3
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=285.04 Aligned_cols=367 Identities=32% Similarity=0.423 Sum_probs=196.7
Q ss_pred CccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739 3 PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG 82 (477)
Q Consensus 3 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 82 (477)
|++++.+..++.++.++|++. .+|+.+..+.+|+.|+.++|.+. ..|+.++.+..|+.++..+|+++ ..|..+..+.
T Consensus 84 p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~ 160 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLS 160 (565)
T ss_pred CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHH
Confidence 444444444444444444444 34444444444555555555444 23334444444444444444444 3444444444
Q ss_pred CCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCcccc-----------
Q 038739 83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG----------- 151 (477)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~----------- 151 (477)
+|..+++.+|++....|+.+. ++.|++||...|.++ .+|..++.+.+|+.|++..|++ ...| .|.
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVG 236 (565)
T ss_pred HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhc
Confidence 444444444443322222222 444444444444443 3444444444444444444444 2222 233
Q ss_pred -------------CCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcccc
Q 038739 152 -------------NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI 218 (477)
Q Consensus 152 -------------~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 218 (477)
+++++..||+.+|+++ ..|+.+..+++|+.||+++|.++ ..|..++++ +|+.|.+.+|.+..+-
T Consensus 237 ~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 237 ENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred ccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHH
Confidence 4455555555555554 34444445555555555555554 334445555 5555555555443110
Q ss_pred chhh---------------------------------------hhcCCCCCCEEeCCCCCCccccccCCcc-CcCcccEE
Q 038739 219 ELDV---------------------------------------LLTSWKNLEFLGLSLNRLSVLTKATSDT-TSQKLKYI 258 (477)
Q Consensus 219 ~~~~---------------------------------------~~~~~~~L~~L~ls~n~i~~~~~~~~~~-~~~~L~~L 258 (477)
..-. ......+.+.|++++-+++.+++..+.. .-.-...+
T Consensus 314 r~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~V 393 (565)
T KOG0472|consen 314 REIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSV 393 (565)
T ss_pred HHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEE
Confidence 0000 0000112333444443333333322211 11123344
Q ss_pred EccCCCC------------------------CCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcc
Q 038739 259 GLRSCNL------------------------TKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLL 314 (477)
Q Consensus 259 ~L~~n~l------------------------~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 314 (477)
+++.|++ ..+|..++.+++|..|+|++|.+. .+|..++ .+..|+.||++.|+|
T Consensus 394 nfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~--~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 394 NFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMG--SLVRLQTLNLSFNRF 470 (565)
T ss_pred ecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhh--hhhhhheeccccccc
Confidence 4444444 444445667788888888888777 5676666 677788888888877
Q ss_pred cccCCCCcccCCCCCCCCCC---CCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceee
Q 038739 315 TGFDQHPVVLPGNKGPLPVP---PPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLD 391 (477)
Q Consensus 315 ~~~~~~~~~l~~n~~~~~~~---~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~ 391 (477)
... |.. +..++++..++|++...-|+.+.++.+|..|||.+|.+. .+|..++++. +|++|+
T Consensus 471 r~l--------------P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt-nL~hLe 534 (565)
T KOG0472|consen 471 RML--------------PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT-NLRHLE 534 (565)
T ss_pred ccc--------------hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc-ceeEEE
Confidence 643 322 335667777889988666666999999999999999998 8899999999 999999
Q ss_pred cCCCcCC
Q 038739 392 LQGNNLP 398 (477)
Q Consensus 392 Ls~N~l~ 398 (477)
++||+|.
T Consensus 535 L~gNpfr 541 (565)
T KOG0472|consen 535 LDGNPFR 541 (565)
T ss_pred ecCCccC
Confidence 9999997
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=2.3e-35 Score=283.27 Aligned_cols=362 Identities=23% Similarity=0.310 Sum_probs=205.4
Q ss_pred CCCCCEEEccCCCCC-CCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739 9 LSKLLHLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87 (477)
Q Consensus 9 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 87 (477)
++-++-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 445555666666665 345656666666666666665555 45555666666666666666655 333445555666666
Q ss_pred eCcCCCCCC-cccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcC
Q 038739 88 DLSQNGYFG-ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF 166 (477)
Q Consensus 88 ~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 166 (477)
++..|++.. -+|..+..+..|+.||||+|++. ..|..+...+++-.|+|++|++.......|-+++.|-.|||++|.+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 666665532 24555555666666666666665 5555565556666666666666333223444555666666666665
Q ss_pred CCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcc-ccchhhhhcCCCCCCEEeCCCCCCccccc
Q 038739 167 SGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG-MIELDVLLTSWKNLEFLGLSLNRLSVLTK 245 (477)
Q Consensus 167 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~ls~n~i~~~~~ 245 (477)
. ..|.-+..+..|++|++++|.+...--..+..+.+|++|.+++.+-+- ..|.. +..+.+|..+|+|.|.+..+++
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dvDlS~N~Lp~vPe 239 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDVDLSENNLPIVPE 239 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc--hhhhhhhhhccccccCCCcchH
Confidence 5 333345555566666666665543222233334445555555543221 12222 4455556666666665444433
Q ss_pred cCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccC
Q 038739 246 ATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLP 325 (477)
Q Consensus 246 ~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 325 (477)
... .+++|+.|+|++|.|+++.-......+|++|++|.|+++ ..|..+. .++.|+.|.+.+|+++-.
T Consensus 240 cly--~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avc--KL~kL~kLy~n~NkL~Fe-------- 306 (1255)
T KOG0444|consen 240 CLY--KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVC--KLTKLTKLYANNNKLTFE-------- 306 (1255)
T ss_pred HHh--hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHh--hhHHHHHHHhccCccccc--------
Confidence 322 345566666666666555444444455666666666665 5555555 566666666666655422
Q ss_pred CCCCCCCCC---CCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCc
Q 038739 326 GNKGPLPVP---PPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN 396 (477)
Q Consensus 326 ~n~~~~~~~---~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~ 396 (477)
.+|.. +..|+.+..++|.+. .+|+.++.|..|+.|.|++|++. .+|+.+.-++ .|+.||+..|+
T Consensus 307 ----GiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~-~l~vLDlreNp 373 (1255)
T KOG0444|consen 307 ----GIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP-DLKVLDLRENP 373 (1255)
T ss_pred ----CCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC-CcceeeccCCc
Confidence 22333 224455555666665 67777888888888888888776 5777777777 78888887775
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.2e-33 Score=269.83 Aligned_cols=343 Identities=25% Similarity=0.312 Sum_probs=289.6
Q ss_pred CCCCCCEEEcccccCC-ccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccE
Q 038739 32 NLHSLEELDLSANFLS-SEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEK 110 (477)
Q Consensus 32 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 110 (477)
-++-.+-.|+++|.++ +..|.....++.++.|.|...++. .+|+.++.+.+|++|.+++|++.. +-..++.++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence 3456778899999998 578888999999999999999987 899999999999999999999864 4466889999999
Q ss_pred EEccCCcCc-CCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739 111 LDLSFNNFS-GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN 189 (477)
Q Consensus 111 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 189 (477)
+.+..|++. ..+|..+..+..|+.|||++|++ ...|..+..-.++-.|+|++|+|..+....+.+++.|-.||+|+|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 999999985 35788888999999999999999 5688888888999999999999986666667789999999999999
Q ss_pred cccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCcc-CcCcccEEEccCCCCCCc
Q 038739 190 FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDT-TSQKLKYIGLRSCNLTKF 268 (477)
Q Consensus 190 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~-~~~~L~~L~L~~n~l~~~ 268 (477)
+. .+|.....+..|++|+|++|.+.-..-.. +..+++|++|.+++.+ .....++... .+.+|..++++.|.+..+
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ--LPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~v 237 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQ--LPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPIV 237 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhc--Cccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCCcc
Confidence 97 66777899999999999999876433222 4556778888888764 2233334333 778999999999999999
Q ss_pred chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcC
Q 038739 269 PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSL 348 (477)
Q Consensus 269 p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l 348 (477)
|+.+.++++|+.|+||+|+|+. ...... .-.+|++|++|+|+++..+.. -..++.|+.|.+.+|++
T Consensus 238 Pecly~l~~LrrLNLS~N~ite-L~~~~~--~W~~lEtLNlSrNQLt~LP~a-----------vcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITE-LNMTEG--EWENLETLNLSRNQLTVLPDA-----------VCKLTKLTKLYANNNKL 303 (1255)
T ss_pred hHHHhhhhhhheeccCcCceee-eeccHH--HHhhhhhhccccchhccchHH-----------HhhhHHHHHHHhccCcc
Confidence 9999999999999999999984 333333 457899999999999854211 12367889999999998
Q ss_pred c-cCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcC
Q 038739 349 T-GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397 (477)
Q Consensus 349 ~-~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l 397 (477)
+ +.||+.++.+.+|+.+..++|.+. .+|+.+.... .|+.|.|++|++
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~-kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCV-KLQKLKLDHNRL 351 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccc-cCchhhhhhH-HHHHhcccccce
Confidence 7 458999999999999999999997 8999999998 999999999997
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-33 Score=258.93 Aligned_cols=263 Identities=32% Similarity=0.421 Sum_probs=112.9
Q ss_pred CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739 12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91 (477)
Q Consensus 12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 91 (477)
|+.+++++|.+. .+-..+.++..|.+|++++|++. ..|.+++.+..++.++.++|++. .+|+.++.+.+|..+++++
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 344444444444 22223444444444444444444 33334444444444444444444 4444444444444444444
Q ss_pred CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCC
Q 038739 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL 171 (477)
Q Consensus 92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 171 (477)
|.+. .+++.++.+..|+.++..+|+++ ..|..+.++.++..+++.+|++....|..+. +..|++||...|.+. .+|
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCC
Confidence 4442 33334444444444444444444 3344444444444444444444332222222 444444444444443 333
Q ss_pred cCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccC
Q 038739 172 GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTT 251 (477)
Q Consensus 172 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~ 251 (477)
..++.+.+|+.|++..|++. ..| .|.+|+.|+++.++.|.+.-..... ...++++.+||+.+|+++..++... .
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~--~~~L~~l~vLDLRdNklke~Pde~c--l 273 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEH--LKHLNSLLVLDLRDNKLKEVPDEIC--L 273 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHH--hcccccceeeeccccccccCchHHH--H
Confidence 34444444444444444443 223 3444444444444444443222211 3344444444444444333322211 2
Q ss_pred cCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcc
Q 038739 252 SQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRI 288 (477)
Q Consensus 252 ~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i 288 (477)
+.+|+.||+++|.|+.+|..++++ .|+.|-+.+|.+
T Consensus 274 LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 274 LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 233444444444444444444444 444444444443
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=2.2e-29 Score=252.53 Aligned_cols=368 Identities=27% Similarity=0.339 Sum_probs=195.4
Q ss_pred CCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeC
Q 038739 10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDL 89 (477)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 89 (477)
..++.|+++.|.+-...-+...+.-+|++|++++|++. ..|..+..+.+|+.|+++.|.+. ..|....++.+|++|.|
T Consensus 21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence 33555666666554332233344445666666666654 45555566666666666666655 45555666666666666
Q ss_pred cCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCc
Q 038739 90 SQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD 169 (477)
Q Consensus 90 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 169 (477)
.+|.+ ...|..+..+.+|++|++++|.+. .+|..+..+..++.+..++|..... ++... ++.+++..|.+.+.
T Consensus 99 ~~n~l-~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 99 KNNRL-QSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGS 171 (1081)
T ss_pred ccchh-hcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccc
Confidence 66655 345566666666666666666665 5555555555555555555511111 11111 44455555555444
Q ss_pred CCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchh----------------hhhcCCCCCCEE
Q 038739 170 LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD----------------VLLTSWKNLEFL 233 (477)
Q Consensus 170 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~----------------~~~~~~~~L~~L 233 (477)
++..+..++. .|++.+|.+. ...+..+++|+.|....|++....... .......+|+++
T Consensus 172 ~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~ 246 (1081)
T KOG0618|consen 172 FLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYL 246 (1081)
T ss_pred hhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceee
Confidence 4444444333 4555555543 112344444444544444444322111 001122344455
Q ss_pred eCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCc
Q 038739 234 GLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNL 313 (477)
Q Consensus 234 ~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~ 313 (477)
++++|++..+++ ....+.+|+.+...+|.++.+|..+...++|+.|++..|.+. .+|.... .+..|++|+|..|+
T Consensus 247 dis~n~l~~lp~--wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le--~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 247 DISHNNLSNLPE--WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLE--GLKSLRTLDLQSNN 321 (1081)
T ss_pred ecchhhhhcchH--HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCccc--ccceeeeeeehhcc
Confidence 555544433331 111344455555555555444444444445555555555554 4444444 67889999999999
Q ss_pred ccccCCCCc----------ccCCC-CCCCCC----CCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCc
Q 038739 314 LTGFDQHPV----------VLPGN-KGPLPV----PPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 378 (477)
Q Consensus 314 l~~~~~~~~----------~l~~n-~~~~~~----~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~ 378 (477)
+.......+ ..+.| ....|. ..+.|+.|.+.+|.+++..-..+.+.++|+.|+|+||++......
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 987765433 11111 111111 134566777777777777666677777777777777777633334
Q ss_pred hhhhcccccceeecCCCcC
Q 038739 379 CLGNFSDELLVLDLQGNNL 397 (477)
Q Consensus 379 ~l~~l~~~L~~L~Ls~N~l 397 (477)
.+.++. .|+.|+||||.+
T Consensus 402 ~~~kle-~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 402 KLRKLE-ELEELNLSGNKL 419 (1081)
T ss_pred HHhchH-HhHHHhcccchh
Confidence 566676 777777777776
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=2.1e-30 Score=259.87 Aligned_cols=372 Identities=28% Similarity=0.343 Sum_probs=202.5
Q ss_pred CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739 8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87 (477)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 87 (477)
+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|++|
T Consensus 43 ~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYL 119 (1081)
T ss_pred heeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccc
Confidence 3445899999999887 77878888999999999999887 56677888899999999988876 788888889999999
Q ss_pred eCcCCCCCCcccccccCCCCccEEEccCC-------------------cCcCCCCccccCCCCCCEEEccCCCCcccCCc
Q 038739 88 DLSQNGYFGELPTSIRNLFSLEKLDLSFN-------------------NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPH 148 (477)
Q Consensus 88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-------------------~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 148 (477)
|++.|++ +.+|..+..++.++.+..++| .+.+.++..+..+.. .|+|++|.+.. .
T Consensus 120 dlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~ 193 (1081)
T KOG0618|consen 120 DLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---L 193 (1081)
T ss_pred ccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---h
Confidence 9999987 455655554444444444444 333333333333333 46666666531 1
Q ss_pred cccCC--------------------CCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEe
Q 038739 149 SIGNF--------------------TQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALD 208 (477)
Q Consensus 149 ~l~~l--------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 208 (477)
.+..+ ++|+.|+.++|.++...+ -....+|++++++.|+++ .+|+|+..+.+|+.++
T Consensus 194 dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 194 DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALN 270 (1081)
T ss_pred hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEec
Confidence 11222 344444444444442211 112356777777777776 4457777777777777
Q ss_pred CcCCcCccccchhh--------------------hhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCc
Q 038739 209 LAQNSYRGMIELDV--------------------LLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF 268 (477)
Q Consensus 209 L~~n~l~~~~~~~~--------------------~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 268 (477)
..+|.+........ .....+.|++|++..|++...++.........+..|..+.|.+...
T Consensus 271 ~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 271 ANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred ccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 77777743221100 1233555666666666555444322111111122222222222111
Q ss_pred chh-hhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCc---------ccCCC-CCCCCC---C
Q 038739 269 PNF-LQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPV---------VLPGN-KGPLPV---P 334 (477)
Q Consensus 269 p~~-l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~l~~n-~~~~~~---~ 334 (477)
|.. =...+.|+.|.+.+|.+++.....+. .+..|+.|+|++|++..++...+ ++++| ...+|. .
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~--~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~ 428 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLV--NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVAN 428 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhc--cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHh
Confidence 100 00122344444445544444333333 44555555555555543321111 11111 111121 1
Q ss_pred CCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCc
Q 038739 335 PPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN 396 (477)
Q Consensus 335 ~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~ 396 (477)
.+.|++|...+|++. ..| .+.+++.|+.+|+|.|+++...-..-...+ .|++||++||.
T Consensus 429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p-~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP-NLKYLDLSGNT 487 (1081)
T ss_pred hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCc-ccceeeccCCc
Confidence 345555555666655 445 566667777777777766643222111223 67777777764
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=2.2e-25 Score=246.87 Aligned_cols=341 Identities=19% Similarity=0.223 Sum_probs=256.0
Q ss_pred ccccccCCCCCCEEEccccc------CCccccccCCCCC-CCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcc
Q 038739 26 LPVSVGNLHSLEELDLSANF------LSSEWPISIGNLS-SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGEL 98 (477)
Q Consensus 26 ~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 98 (477)
.+.+|.++++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..| ...+|++|++++|++. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 34567888888888886553 2234566666654 5888888888876 677766 4688888999888874 56
Q ss_pred cccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCC
Q 038739 99 PTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLR 178 (477)
Q Consensus 99 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 178 (477)
+..+..+++|+.|+++++.....+| .++.+++|++|++++|.....+|..+..+++|+.|++++|..-..+|..+ +++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 6777888889999998876555666 47778889999998887777788888888899999998875444556544 678
Q ss_pred CCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccc----cCC--ccCc
Q 038739 179 SLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTK----ATS--DTTS 252 (477)
Q Consensus 179 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~----~~~--~~~~ 252 (477)
+|+.|++++|.....+|.. ..+|+.|++++|.+...+. ...+++|+.|++.++....+.. ... ...+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~----~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPS----NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccc----cccccccccccccccchhhccccccccchhhhhcc
Confidence 8889999888655455532 4578888998888765432 2246778888887643211111 000 1135
Q ss_pred CcccEEEccCCCC-CCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCC
Q 038739 253 QKLKYIGLRSCNL-TKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPL 331 (477)
Q Consensus 253 ~~L~~L~L~~n~l-~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~ 331 (477)
++|+.|++++|.. ..+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|.... .+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~-------------~~ 841 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLR-------------TF 841 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccc-------------cc
Confidence 6899999999865 7899999999999999999987666788765 68999999999975432 33
Q ss_pred CCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCc
Q 038739 332 PVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNN 396 (477)
Q Consensus 332 ~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~ 396 (477)
|..+.+++.|++++|.++ .+|.++..+++|+.|+|++|.-...+|..+..++ .|+.+++++|.
T Consensus 842 p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~-~L~~L~l~~C~ 904 (1153)
T PLN03210 842 PDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK-HLETVDFSDCG 904 (1153)
T ss_pred cccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc-CCCeeecCCCc
Confidence 455678999999999998 6899999999999999999544446887888888 99999999985
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1e-23 Score=233.58 Aligned_cols=337 Identities=20% Similarity=0.214 Sum_probs=256.0
Q ss_pred ccCCCCCCCCEEEccCCCC------CCCccccccCCC-CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCc
Q 038739 4 SSLGNLSKLLHLDLSLNEL------QGELPVSVGNLH-SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPI 76 (477)
Q Consensus 4 ~~l~~l~~L~~L~L~~n~l------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 76 (477)
.+|.++++|+.|.+..+.. ...+|..|..++ +|+.|.+.++.+. .+|..| ...+|++|++++|++. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 4588899999999976543 334666777664 6999999999887 556666 5689999999999987 6777
Q ss_pred ccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCC
Q 038739 77 SMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL 156 (477)
Q Consensus 77 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 156 (477)
.+..+++|++|+++++.....+|. ++.+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 888999999999998865566664 7889999999999987767899999999999999999987667777765 78999
Q ss_pred cEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcc-------ccchhhhhcCCCC
Q 038739 157 QYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG-------MIELDVLLTSWKN 229 (477)
Q Consensus 157 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-------~~~~~~~~~~~~~ 229 (477)
+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|+.|.+.++.... ..+. .....++
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~--~~~~~~s 779 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL--MTMLSPS 779 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchh--hhhcccc
Confidence 99999998765555543 467899999999886 455544 57888888887743221 1111 1334578
Q ss_pred CCEEeCCCCCCccccccCCcc-CcCcccEEEccCCC-CCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeE
Q 038739 230 LEFLGLSLNRLSVLTKATSDT-TSQKLKYIGLRSCN-LTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGF 307 (477)
Q Consensus 230 L~~L~ls~n~i~~~~~~~~~~-~~~~L~~L~L~~n~-l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L 307 (477)
|+.|++++| ......+... .+++|+.|++++|. ++.+|... .+++|+.|++++|.....+|. ...+|+.|
T Consensus 780 L~~L~Ls~n--~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L 851 (1153)
T PLN03210 780 LTRLFLSDI--PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISDL 851 (1153)
T ss_pred chheeCCCC--CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----cccccCEe
Confidence 999999988 3344344332 67889999999874 57888655 688999999999876555554 24678999
Q ss_pred EecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCc
Q 038739 308 NFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNN 371 (477)
Q Consensus 308 ~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~ 371 (477)
++++|.++..+.. ...+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus 852 ~Ls~n~i~~iP~s-----------i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 852 NLSRTGIEEVPWW-----------IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCccChHH-----------HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9999988754211 1236789999998855444688888889999999999984
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=3e-27 Score=216.58 Aligned_cols=369 Identities=22% Similarity=0.216 Sum_probs=227.3
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEeccc-CcCcccCCcccCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ-NRFFGELPISMGN 80 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~ 80 (477)
||..+. +.-++|+|..|+|+...+.+|..+++|+.||||+|+|+.+.|++|.+++.|..|-+.+ |+|+......|++
T Consensus 61 VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 61 VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 454443 3567889999999988888899999999999999999988899999998887777666 8888666678888
Q ss_pred CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc------------cCCc
Q 038739 81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG------------KVPH 148 (477)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~------------~~~~ 148 (477)
+..|+.|.+.-|++.-...+.|..+++|..|.+..|.+...-...+..+..++.+.+..|.+.. ..|.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 9999999999888877777888899999999999998884444478888888888888776311 1111
Q ss_pred cccCCCCCcEEECCCCcC-------------------------CCc-CCcCCCCCCCCCEEEccCCccccccchhhhcCC
Q 038739 149 SIGNFTQLQYLHLGSNNF-------------------------SGD-LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLS 202 (477)
Q Consensus 149 ~l~~l~~L~~L~l~~n~l-------------------------~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 202 (477)
.++......-..+.+..+ .+. ....|..+++|++|++++|+++.+-+.+|.+..
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 111111111111111111 111 112345566666666666666665566666666
Q ss_pred CCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC------CcchhhhcCC
Q 038739 203 QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT------KFPNFLQNQH 276 (477)
Q Consensus 203 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~------~~p~~l~~~~ 276 (477)
++++|.|..|++..+.... |.++..|++|+|.+|+|+.+....+.. ...|.+|.+-.|.+. .+-+|+.+-.
T Consensus 299 ~l~eL~L~~N~l~~v~~~~--f~~ls~L~tL~L~~N~it~~~~~aF~~-~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGM--FQGLSGLKTLSLYDNQITTVAPGAFQT-LFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred hhhhhhcCcchHHHHHHHh--hhccccceeeeecCCeeEEEecccccc-cceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 6666666666665443332 566666666666666655554444332 334555555544431 1122222110
Q ss_pred CcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccC---CCCc-------------------ccCCC-CCCCCC
Q 038739 277 HLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFD---QHPV-------------------VLPGN-KGPLPV 333 (477)
Q Consensus 277 ~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~-------------------~l~~n-~~~~~~ 333 (477)
-.| .|..- .-..++.+.+++..+..+. +.+. ..++. ...+|.
T Consensus 376 -----------~~~-~~~Cq---~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~ 440 (498)
T KOG4237|consen 376 -----------VVG-NPRCQ---SPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPR 440 (498)
T ss_pred -----------CCC-CCCCC---CCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCC
Confidence 000 11110 1122344444443332211 0000 01111 223444
Q ss_pred CCC-ccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCC
Q 038739 334 PPP-GTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGN 395 (477)
Q Consensus 334 ~~~-~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N 395 (477)
..| ....+++.+|.++ .+|.. .+.+| .+|+|+|+++...-..|.+++ .|.+|-|++|
T Consensus 441 ~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~t-ql~tlilsyn 498 (498)
T KOG4237|consen 441 GIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMT-QLSTLILSYN 498 (498)
T ss_pred CCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchh-hhheeEEecC
Confidence 433 5678889999998 67776 67778 899999999866667788898 8999999887
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.91 E-value=1.7e-23 Score=216.48 Aligned_cols=266 Identities=23% Similarity=0.256 Sum_probs=171.2
Q ss_pred CCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 038739 59 SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLR 138 (477)
Q Consensus 59 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (477)
.-..|+++.+.++ .+|..+. ++|+.|++++|+++. +|.. .++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 3556677777666 4555554 366777777776643 4432 356777777777776 34432 3566777777
Q ss_pred CCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcccc
Q 038739 139 SCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI 218 (477)
Q Consensus 139 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 218 (477)
+|.+.. +|.. .++|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.+.+..
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccccc
Confidence 776642 3332 2456677777777763 3322 3567777777777764 2321 235667777777776533
Q ss_pred chhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCc
Q 038739 219 ELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLD 298 (477)
Q Consensus 219 ~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~ 298 (477)
.. ..+|+.|++++|+++.++.. +.+|+.|++++|.++.+|.. ..+|+.|++++|++++ +|..
T Consensus 339 ~l------p~~Lq~LdLS~N~Ls~LP~l-----p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l--- 400 (788)
T PRK15387 339 TL------PSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL--- 400 (788)
T ss_pred cc------ccccceEecCCCccCCCCCC-----CcccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---
Confidence 21 14677788887777655442 24677788888888777753 3567888888888873 4532
Q ss_pred ccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCc
Q 038739 299 PNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 378 (477)
Q Consensus 299 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~ 378 (477)
.++|+.|++++|+++++ |..+.+|+.|++++|+++ .+|..++++++|+.|+|++|++++.+|.
T Consensus 401 --~s~L~~LdLS~N~LssI--------------P~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 401 --PSELKELMVSGNRLTSL--------------PMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred --ccCCCEEEccCCcCCCC--------------CcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 35678888888887743 333456777888888887 6788888888888888888888887777
Q ss_pred hhhh
Q 038739 379 CLGN 382 (477)
Q Consensus 379 ~l~~ 382 (477)
.+..
T Consensus 464 ~L~~ 467 (788)
T PRK15387 464 ALRE 467 (788)
T ss_pred HHHH
Confidence 6644
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.91 E-value=1.7e-23 Score=216.41 Aligned_cols=265 Identities=23% Similarity=0.254 Sum_probs=213.5
Q ss_pred CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEEC
Q 038739 82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHL 161 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 161 (477)
.+-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|.. +++|++|++++|+++. +|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 45678999999996 5777665 38999999999999 56643 5899999999999964 4543 368999999
Q ss_pred CCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCc
Q 038739 162 GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241 (477)
Q Consensus 162 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~ 241 (477)
++|.++. +|.. ..+|+.|++++|+++. +|. .+++|+.|++++|++.+.... ..+|+.|++++|.+.
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~Lp~l------p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPAL------PSELCKLWAYNNQLT 335 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccCCCC------cccccccccccCccc
Confidence 9999874 3432 3678999999999984 443 357899999999999875431 246889999999887
Q ss_pred cccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCC
Q 038739 242 VLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHP 321 (477)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 321 (477)
.++.. +.+|+.|++++|+++.+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++.
T Consensus 336 ~LP~l-----p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l-----~~~L~~LdLs~N~Lt~L---- 397 (788)
T PRK15387 336 SLPTL-----PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPAL-----PSGLKELIVSGNRLTSL---- 397 (788)
T ss_pred ccccc-----ccccceEecCCCccCCCCCC---Ccccceehhhcccccc-Cccc-----ccccceEEecCCcccCC----
Confidence 66543 25799999999999999863 4678999999999984 6643 35799999999999853
Q ss_pred cccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCccc
Q 038739 322 VVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSK 401 (477)
Q Consensus 322 ~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 401 (477)
|..++.|+.|++++|.+++ +|... .+|+.|++++|+++ .+|..+..++ .|+.|++++|+|+|.+
T Consensus 398 ----------P~l~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~-~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 398 ----------PVLPSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLS-SETTVNLEGNPLSERT 461 (788)
T ss_pred ----------CCcccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhcc-CCCeEECCCCCCCchH
Confidence 4445789999999999984 77543 46889999999998 7899999998 9999999999999987
Q ss_pred CCCC
Q 038739 402 GCES 405 (477)
Q Consensus 402 p~~~ 405 (477)
|...
T Consensus 462 ~~~L 465 (788)
T PRK15387 462 LQAL 465 (788)
T ss_pred HHHH
Confidence 7643
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2.6e-24 Score=197.33 Aligned_cols=114 Identities=28% Similarity=0.262 Sum_probs=100.7
Q ss_pred ccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEccc-ccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739 4 SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSA-NFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG 82 (477)
Q Consensus 4 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 82 (477)
.+|+.+++|++||||+|.|+.+.|++|.++++|..|-+-+ |+|+....+.|+++..|+-|.+.-|++.-...+.|..++
T Consensus 85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 85 GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP 164 (498)
T ss_pred hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence 6799999999999999999999999999999998877765 999988888999999999999999999877888899999
Q ss_pred CCCEEeCcCCCCCCcccccccCCCCccEEEccCCc
Q 038739 83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN 117 (477)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 117 (477)
+|..|.+..|.+...--..|..+.+++.+.+..|.
T Consensus 165 ~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 165 SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 99999999998854444478888888888887776
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=2e-20 Score=194.88 Aligned_cols=244 Identities=21% Similarity=0.278 Sum_probs=124.2
Q ss_pred CccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEcc
Q 038739 107 SLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVA 186 (477)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 186 (477)
+|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 3444444444444 2332222 24444444444443 2232221 23444444444444 2232221 244555555
Q ss_pred CCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC
Q 038739 187 KCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT 266 (477)
Q Consensus 187 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~ 266 (477)
+|+++ .+|..+. ++|+.|++++|++++.... + .++|+.|++++|.+..++.. .+++|+.|++++|.++
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~---l--p~sL~~L~Ls~N~Lt~LP~~----l~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIRTLPAH---L--PSGITHLNVQSNSLTALPET----LPPGLKTLEAGENALT 338 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCccccCccc---c--hhhHHHHHhcCCccccCCcc----ccccceeccccCCccc
Confidence 55444 2333221 3455555555555433211 1 13455666666655543321 1246777777777776
Q ss_pred CcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCC
Q 038739 267 KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNN 346 (477)
Q Consensus 267 ~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n 346 (477)
.+|..+ +++|+.|++++|+++ .+|..+ .++|+.|++++|+++.+++ .....|+.|++++|
T Consensus 339 ~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l----p~~L~~LdLs~N~Lt~LP~-------------~l~~sL~~LdLs~N 398 (754)
T PRK15370 339 SLPASL--PPELQVLDVSKNQIT-VLPETL----PPTITTLDVSRNALTNLPE-------------NLPAALQIMQASRN 398 (754)
T ss_pred cCChhh--cCcccEEECCCCCCC-cCChhh----cCCcCEEECCCCcCCCCCH-------------hHHHHHHHHhhccC
Confidence 666544 357777777777776 455443 2567777777777764321 11235667777777
Q ss_pred cCccCCChh----hhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcc
Q 038739 347 SLTGEIPSW----ICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLS 400 (477)
Q Consensus 347 ~l~~~~p~~----~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 400 (477)
+++ .+|.. +..++.+..|++.+|.++. ..+. .|+.+ ++.+.+.|.
T Consensus 399 ~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~-~L~~L-l~s~~~~gp 447 (754)
T PRK15370 399 NLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQ-NMQRL-MSSVGYQGP 447 (754)
T ss_pred Ccc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHH-HHHHh-hhcccccCC
Confidence 776 44443 3445788899999998872 2333 44445 444555444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=1.5e-20 Score=195.90 Aligned_cols=181 Identities=23% Similarity=0.371 Sum_probs=101.0
Q ss_pred CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739 11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS 90 (477)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 90 (477)
+.+.|+++++.++ .+|..+. ++|+.|++++|+++. +|..+. ++|++|++++|+++ .+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4567777777776 3454442 467777777777764 343332 46777777777766 4454432 357777777
Q ss_pred CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL 170 (477)
Q Consensus 91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 170 (477)
+|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence 77764 4454443 36677777777766 4554443 456666666666643 333322 356666666666653 2
Q ss_pred CcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCc
Q 038739 171 LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR 215 (477)
Q Consensus 171 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 215 (477)
|..+ .++|+.|++++|.+++ +|..+ .++|+.|++++|++.
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT 359 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC
Confidence 3222 2455556666655553 33332 145555555555544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=1e-20 Score=182.67 Aligned_cols=278 Identities=24% Similarity=0.245 Sum_probs=141.9
Q ss_pred EEEccCCCCC-CCccccccCCCCCCEEEcccccCCcc----ccccCCCCCCCCEEecccCcCcc------cCCcccCCCC
Q 038739 14 HLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSE----WPISIGNLSSLKELDLSQNRFFG------ELPISMGNLG 82 (477)
Q Consensus 14 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~ 82 (477)
.|+|..+.++ ......+..+.+|++|+++++.++.. ++..+...+.|++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777776 33444566677788888888877542 34445666778888888776652 1233455566
Q ss_pred CCCEEeCcCCCCCCcccccccCCCC---ccEEEccCCcCcC----CCCccccCC-CCCCEEEccCCCCccc----CCccc
Q 038739 83 SLKVLDLSQNGYFGELPTSIRNLFS---LEKLDLSFNNFSG----EFPWSTGNF-SSLKLLDLRSCGFWGK----VPHSI 150 (477)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~~~~~----~~~~l 150 (477)
+|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|++|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 7777777777765444444443333 6777776666652 111223334 5566666666655421 12233
Q ss_pred cCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccc--hhhhhcCCC
Q 038739 151 GNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIE--LDVLLTSWK 228 (477)
Q Consensus 151 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~ 228 (477)
..+++|++|++++|.+++.... .++..+..+++|++|++++|.+.+... ....+..++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIR--------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHH--------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 4444555555555554421100 111222333444444444444432211 111233444
Q ss_pred CCCEEeCCCCCCccccccCCcc----CcCcccEEEccCCCCC-----CcchhhhcCCCcCEEeccCCcccccC----Ccc
Q 038739 229 NLEFLGLSLNRLSVLTKATSDT----TSQKLKYIGLRSCNLT-----KFPNFLQNQHHLRFMDLSDNRIQGKV----PKW 295 (477)
Q Consensus 229 ~L~~L~ls~n~i~~~~~~~~~~----~~~~L~~L~L~~n~l~-----~~p~~l~~~~~L~~L~Ls~n~i~~~~----p~~ 295 (477)
+|+.|++++|.+...+...... ..+.|++|++++|.++ .+...+..+++|+++++++|.+.+.. ...
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 5555555555433211111111 1245666666666653 22344455567777777777776442 222
Q ss_pred CCcccC-CCCCeEEecCCc
Q 038739 296 LLDPNM-QNLNGFNFSHNL 313 (477)
Q Consensus 296 ~~~~~l-~~L~~L~Ls~N~ 313 (477)
+. .. +.|+.+++.+|.
T Consensus 302 ~~--~~~~~~~~~~~~~~~ 318 (319)
T cd00116 302 LL--EPGNELESLWVKDDS 318 (319)
T ss_pred Hh--hcCCchhhcccCCCC
Confidence 21 22 466677766664
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=1e-20 Score=182.60 Aligned_cols=280 Identities=24% Similarity=0.221 Sum_probs=161.5
Q ss_pred EEEcccccCCc-cccccCCCCCCCCEEecccCcCccc----CCcccCCCCCCCEEeCcCCCCCC------cccccccCCC
Q 038739 38 ELDLSANFLSS-EWPISIGNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGYFG------ELPTSIRNLF 106 (477)
Q Consensus 38 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~l~~l~ 106 (477)
.|+|..+.+++ .....+..+.+|++|+++++.++.. ++..+...++|++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35555665552 2233344555667777766665421 33344455556666666665531 1122333444
Q ss_pred CccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCC---CCcEEECCCCcCCC----cCCcCCCCC-C
Q 038739 107 SLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT---QLQYLHLGSNNFSG----DLLGPIGNL-R 178 (477)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~---~L~~L~l~~n~l~~----~~~~~l~~l-~ 178 (477)
+|++|++++|.+. ...+..+..+. +|++|++++|.+++ .+...+..+ +
T Consensus 82 ~L~~L~l~~~~~~------------------------~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~ 137 (319)
T cd00116 82 GLQELDLSDNALG------------------------PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137 (319)
T ss_pred ceeEEEccCCCCC------------------------hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCC
Confidence 5555555544444 33333332222 26666666655542 111223344 6
Q ss_pred CCCEEEccCCcccc----ccchhhhcCCCCCEEeCcCCcCccccc--hhhhhcCCCCCCEEeCCCCCCccccccCC---c
Q 038739 179 SLEAINVAKCNFSG----QITSSLRNLSQLTALDLAQNSYRGMIE--LDVLLTSWKNLEFLGLSLNRLSVLTKATS---D 249 (477)
Q Consensus 179 ~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~L~~L~ls~n~i~~~~~~~~---~ 249 (477)
+|+.|++++|.+++ .++..+..+++|++|++++|.+.+... ....+..+++|+.|++++|.+...+.... .
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 77777777777763 234456777889999999998875321 11124566899999999997754432211 1
Q ss_pred cCcCcccEEEccCCCCCCc--chhhhc----CCCcCEEeccCCccccc----CCccCCcccCCCCCeEEecCCcccccCC
Q 038739 250 TTSQKLKYIGLRSCNLTKF--PNFLQN----QHHLRFMDLSDNRIQGK----VPKWLLDPNMQNLNGFNFSHNLLTGFDQ 319 (477)
Q Consensus 250 ~~~~~L~~L~L~~n~l~~~--p~~l~~----~~~L~~L~Ls~n~i~~~----~p~~~~~~~l~~L~~L~Ls~N~l~~~~~ 319 (477)
..+++|++|++++|.++.. ...... .+.|+.|++++|.+++. +...+. .+++|+.+++++|.++....
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~--~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA--EKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh--cCCCccEEECCCCCCcHHHH
Confidence 2567899999999998642 121222 47999999999999732 222333 56899999999999985421
Q ss_pred CCcccCCCCCCCCCCCCccceeecCCCcC
Q 038739 320 HPVVLPGNKGPLPVPPPGTITYLASNNSL 348 (477)
Q Consensus 320 ~~~~l~~n~~~~~~~~~~l~~L~ls~n~l 348 (477)
..+ ...+...-+.++++++.+|.+
T Consensus 296 ~~~-----~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 296 QLL-----AESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHH-----HHHHhhcCCchhhcccCCCCC
Confidence 110 001111225677888877653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=7.3e-20 Score=149.83 Aligned_cols=155 Identities=35% Similarity=0.558 Sum_probs=77.1
Q ss_pred CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739 8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87 (477)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 87 (477)
++.+.+.|.||+|+++ .+|..++.+.+|++|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3444455555555555 33334555555555555555554 34444555555555555555544 455555555555555
Q ss_pred eCcCCCCCC-cccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcC
Q 038739 88 DLSQNGYFG-ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF 166 (477)
Q Consensus 88 ~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 166 (477)
|+++|++.. .+|..|..++.|+.|+++.|.+. .+|..++++++|+.|.+.+|.+ -..|..++.++.|++|++.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhccccee
Confidence 555555432 24444444555555555555554 4444555555555555555444 23444444444455555555444
Q ss_pred C
Q 038739 167 S 167 (477)
Q Consensus 167 ~ 167 (477)
+
T Consensus 186 ~ 186 (264)
T KOG0617|consen 186 T 186 (264)
T ss_pred e
Confidence 4
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=7.9e-19 Score=143.81 Aligned_cols=165 Identities=31% Similarity=0.484 Sum_probs=120.7
Q ss_pred ccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739 30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE 109 (477)
Q Consensus 30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 109 (477)
+.++.+++.|.||+|+++ ..|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++ ...|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCCCchhh
Confidence 445667777888888887 44556778888888888888876 6777788888888888888877 46777888888888
Q ss_pred EEEccCCcCc-CCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCC
Q 038739 110 KLDLSFNNFS-GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKC 188 (477)
Q Consensus 110 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 188 (477)
.||+.+|++. ...|..|..+..|+.|++++|.+ ..+|..++++++|+.|.+.+|.+- ..|..++.++.|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 8888887774 35676777777777777777777 456677777777777777777765 45666777777777777777
Q ss_pred ccccccchhhhc
Q 038739 189 NFSGQITSSLRN 200 (477)
Q Consensus 189 ~l~~~~~~~l~~ 200 (477)
.++ .+|..+++
T Consensus 184 rl~-vlppel~~ 194 (264)
T KOG0617|consen 184 RLT-VLPPELAN 194 (264)
T ss_pred eee-ecChhhhh
Confidence 776 44444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.37 E-value=1.9e-12 Score=134.77 Aligned_cols=110 Identities=24% Similarity=0.280 Sum_probs=86.1
Q ss_pred cCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhh
Q 038739 278 LRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWIC 357 (477)
Q Consensus 278 L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~ 357 (477)
++.|+|++|.+.+.+|..+. .+++|+.|+|++|++++.++..+ ..++.|+.|++++|+++|.+|+.++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~----------~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSL----------GSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred EEEEECCCCCccccCCHHHh--CCCCCCEEECCCCcccCcCChHH----------hCCCCCCEEECCCCCCCCCCchHHh
Confidence 67777788877777777776 67778888888777776544321 2356777788888888889999999
Q ss_pred ccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCc
Q 038739 358 NLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPL 399 (477)
Q Consensus 358 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 399 (477)
++++|+.|||++|+++|.+|..+......+..+++++|....
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999999999999999887653367889999997543
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.6e-13 Score=127.16 Aligned_cols=210 Identities=25% Similarity=0.258 Sum_probs=96.3
Q ss_pred CCCCCEEEccCCccccccc-hhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcc
Q 038739 177 LRSLEAINVAKCNFSGQIT-SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKL 255 (477)
Q Consensus 177 l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L 255 (477)
+.+|+.+.+.++....... .....|++++.|||+.|-+....+.......+|+|+.|+++.|++...........++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3444444444444331110 234445555555555555544444444444555555555555544333222222244556
Q ss_pred cEEEccCCCCC--CcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCC
Q 038739 256 KYIGLRSCNLT--KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPV 333 (477)
Q Consensus 256 ~~L~L~~n~l~--~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~ 333 (477)
+.|.++.|+++ .+...+..+|+|+.|+|..|........... .+..|+.|||++|++-.+.. +..-.
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~--i~~~L~~LdLs~N~li~~~~---------~~~~~ 268 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK--ILQTLQELDLSNNNLIDFDQ---------GYKVG 268 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh--hhhHHhhccccCCccccccc---------ccccc
Confidence 66666666553 2223344556666666665531111111111 34455566666665544321 11222
Q ss_pred CCCccceeecCCCcCccC-CChh-----hhccCCCCeEeCCCCcCcccCC--chhhhcccccceeecCCCcCCc
Q 038739 334 PPPGTITYLASNNSLTGE-IPSW-----ICNLNILESLVLSHNNLSGLLP--QCLGNFSDELLVLDLQGNNLPL 399 (477)
Q Consensus 334 ~~~~l~~L~ls~n~l~~~-~p~~-----~~~l~~L~~LdLs~N~l~~~~p--~~l~~l~~~L~~L~Ls~N~l~~ 399 (477)
.++.|..|+++.+.+... .|+. ...+++|++|+++.|++.. .+ ..+..++ +|+.|.+..|.++-
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~-nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLE-NLKHLRITLNYLNK 340 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccc-hhhhhhcccccccc
Confidence 345555555555555432 1221 2345666666666666642 12 2334444 55556655665543
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=3.3e-12 Score=126.94 Aligned_cols=175 Identities=37% Similarity=0.530 Sum_probs=82.6
Q ss_pred CCCCCCCEEecccCcCcccCCcccCCCC-CCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCC
Q 038739 55 GNLSSLKELDLSQNRFFGELPISMGNLG-SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLK 133 (477)
Q Consensus 55 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 133 (477)
..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|...+..+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 33344555555555554 3333334442 5555555555542 23334455555555555555555 3333333445555
Q ss_pred EEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCc
Q 038739 134 LLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS 213 (477)
Q Consensus 134 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 213 (477)
.|++++|.+. .+|........|+++.+++|.+. ..+..+.++.++..+.+.+|++.. .+..+..+++++.|++++|.
T Consensus 190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccc
Confidence 5555555552 23333333334555555555322 223334444555555555555432 23444555555555555555
Q ss_pred CccccchhhhhcCCCCCCEEeCCCCC
Q 038739 214 YRGMIELDVLLTSWKNLEFLGLSLNR 239 (477)
Q Consensus 214 l~~~~~~~~~~~~~~~L~~L~ls~n~ 239 (477)
+..... +....+++.|++++|.
T Consensus 267 i~~i~~----~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 267 ISSISS----LGSLTNLRELDLSGNS 288 (394)
T ss_pred cccccc----ccccCccCEEeccCcc
Confidence 544333 3445555555555553
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=4.1e-12 Score=126.27 Aligned_cols=199 Identities=38% Similarity=0.498 Sum_probs=159.0
Q ss_pred EEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCC-CCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739 14 HLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLS-SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN 92 (477)
Q Consensus 14 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 92 (477)
.+++..+.+... ...+..++.++.|++.+|.++. ++.....+. +|++|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 578888877523 3356666889999999999985 454566664 8999999999997 66677889999999999999
Q ss_pred CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCc
Q 038739 93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLG 172 (477)
Q Consensus 93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 172 (477)
++. .+|......++|+.|++++|++. .+|........|++|.+++|.. -..+..+..+.++..+.+.+|++.. .+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceeee-ccc
Confidence 985 45555557889999999999998 6776666667799999999964 2455678888899999999998863 356
Q ss_pred CCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchh
Q 038739 173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD 221 (477)
Q Consensus 173 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 221 (477)
.+..++.++.|++++|.++.... +....+++.|++++|.+....+..
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 77888899999999999985443 888999999999999887665543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1.3e-13 Score=133.17 Aligned_cols=174 Identities=32% Similarity=0.422 Sum_probs=128.1
Q ss_pred CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739 9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88 (477)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 88 (477)
+..-...|++.|++. .+|..++.+..|+.+.|..|.+. .+|..+.++..|++||++.|++. .+|..+..| -|+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence 444556777778777 67777777777888888877776 56667778888888888888876 666666665 377788
Q ss_pred CcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168 (477)
Q Consensus 89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 168 (477)
+++|++ +.+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||++.|++.
T Consensus 150 ~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EecCcc-ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence 888877 456777777777888888888877 66777777778888888877773 455555533 4777888888877
Q ss_pred cCCcCCCCCCCCCEEEccCCccc
Q 038739 169 DLLGPIGNLRSLEAINVAKCNFS 191 (477)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~n~l~ 191 (477)
.+|-.|.+++.|++|-|.+|.+.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 56777778888888888888776
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=5e-13 Score=122.06 Aligned_cols=204 Identities=25% Similarity=0.302 Sum_probs=92.4
Q ss_pred ccCCCCCCEEEcccccCCcc----ccccCCCCCCCCEEecccCcCcc----cCCc-------ccCCCCCCCEEeCcCCCC
Q 038739 30 VGNLHSLEELDLSANFLSSE----WPISIGNLSSLKELDLSQNRFFG----ELPI-------SMGNLGSLKVLDLSQNGY 94 (477)
Q Consensus 30 ~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~~~-------~~~~l~~L~~L~Ls~n~l 94 (477)
+.....+++++||+|.+... +...+.+.+.|+..++++- ++| .+|+ ++..+++|++||||.|-+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 44556677777777766532 2233455566666666553 121 2222 223445555555555555
Q ss_pred CCcccc----cccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739 95 FGELPT----SIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL 170 (477)
Q Consensus 95 ~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 170 (477)
....+. .+.++..|++|.|.+|.+...-...++ ..|..|. ...-.+.-++|+++..+.|++....
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA---------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence 322221 223444555555555544311000000 0011100 0011223345666666666554211
Q ss_pred ----CcCCCCCCCCCEEEccCCccccc----cchhhhcCCCCCEEeCcCCcCcc--ccchhhhhcCCCCCCEEeCCCCCC
Q 038739 171 ----LGPIGNLRSLEAINVAKCNFSGQ----ITSSLRNLSQLTALDLAQNSYRG--MIELDVLLTSWKNLEFLGLSLNRL 240 (477)
Q Consensus 171 ----~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~L~~L~ls~n~i 240 (477)
...+...+.|+.+.+..|.|... ....+..+++|++|||.+|.++. .......++.|++|+.|++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 12234445566666665555321 23345566666666666665542 222223355555666666665544
Q ss_pred ccccc
Q 038739 241 SVLTK 245 (477)
Q Consensus 241 ~~~~~ 245 (477)
..-+.
T Consensus 254 ~~~Ga 258 (382)
T KOG1909|consen 254 ENEGA 258 (382)
T ss_pred ccccH
Confidence 44433
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=3e-12 Score=114.59 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=62.0
Q ss_pred CCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEE
Q 038739 154 TQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFL 233 (477)
Q Consensus 154 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 233 (477)
..|+++|+++|.|+ .+.++..-.|.++.|+++.|.+... ..+..+++|+.||+++|.++....+ -..+-++++|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw---h~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW---HLKLGNIKTL 357 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh---HhhhcCEeee
Confidence 44555555555554 2233334445555555555555421 1244555555555555554433322 2334455555
Q ss_pred eCCCCCCccccccCCccCcCcccEEEccCCCCCCcc--hhhhcCCCcCEEeccCCccc
Q 038739 234 GLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP--NFLQNQHHLRFMDLSDNRIQ 289 (477)
Q Consensus 234 ~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~i~ 289 (477)
.+++|.|..+... ..+-+|..||+++|+|..+. ..++++|.|+.+.|.+|.+.
T Consensus 358 ~La~N~iE~LSGL---~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETLSGL---RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhhhhh---HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5555543332221 12334555555555554442 34556666666666666665
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.8e-12 Score=121.68 Aligned_cols=209 Identities=25% Similarity=0.292 Sum_probs=96.2
Q ss_pred CCCCCCEEecccCcCcccCC--cccCCCCCCCEEeCcCCCCCCc--ccccccCCCCccEEEccCCcCcCCCCcc-ccCCC
Q 038739 56 NLSSLKELDLSQNRFFGELP--ISMGNLGSLKVLDLSQNGYFGE--LPTSIRNLFSLEKLDLSFNNFSGEFPWS-TGNFS 130 (477)
Q Consensus 56 ~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~ 130 (477)
++.+|+++.|.++... ..+ .....|++++.|||++|-+..- +......+++|+.|+++.|++....... -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4555555555555443 222 2344555666666665544321 1123345556666666666554211111 11344
Q ss_pred CCCEEEccCCCCcccC-CccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccccc-chhhhcCCCCCEEe
Q 038739 131 SLKLLDLRSCGFWGKV-PHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQI-TSSLRNLSQLTALD 208 (477)
Q Consensus 131 ~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~ 208 (477)
.|+.|.++.|.++... -.....+|+|+.|++..|............++.|++|+|++|++-... ....+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 5555555555553211 112234455555555555321111122223344555555554443211 12233344444444
Q ss_pred CcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC-----ccCcCcccEEEccCCCCCCcc--hhhhcCCCcCEE
Q 038739 209 LAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS-----DTTSQKLKYIGLRSCNLTKFP--NFLQNQHHLRFM 281 (477)
Q Consensus 209 L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~-----~~~~~~L~~L~L~~n~l~~~p--~~l~~~~~L~~L 281 (477)
++.+ .|..+..... ...+++|+.|++..|++..++ ..+..+++|+.|
T Consensus 278 ls~t--------------------------gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l 331 (505)
T KOG3207|consen 278 LSST--------------------------GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHL 331 (505)
T ss_pred cccc--------------------------CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhh
Confidence 4444 3333332222 114556677777777665554 345556677777
Q ss_pred eccCCccccc
Q 038739 282 DLSDNRIQGK 291 (477)
Q Consensus 282 ~Ls~n~i~~~ 291 (477)
.+..|.++.+
T Consensus 332 ~~~~n~ln~e 341 (505)
T KOG3207|consen 332 RITLNYLNKE 341 (505)
T ss_pred hccccccccc
Confidence 7777776643
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=7.7e-12 Score=107.22 Aligned_cols=128 Identities=30% Similarity=0.318 Sum_probs=38.8
Q ss_pred ccCCCCCCEEEcccccCCccccccCC-CCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccc-cCCCC
Q 038739 30 VGNLHSLEELDLSANFLSSEWPISIG-NLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLFS 107 (477)
Q Consensus 30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~ 107 (477)
+.+..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.++. + +.+..+++|++|++++|+++.. .+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 34445566666666666643 2343 45666666666666652 2 2455666677777777766543 2223 34666
Q ss_pred ccEEEccCCcCcCCC-CccccCCCCCCEEEccCCCCcccCC---ccccCCCCCcEEECC
Q 038739 108 LEKLDLSFNNFSGEF-PWSTGNFSSLKLLDLRSCGFWGKVP---HSIGNFTQLQYLHLG 162 (477)
Q Consensus 108 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~ 162 (477)
|++|++++|++...- -..+..+++|+.|++.+|++..... ..+..+|+|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 777777777665311 1345566777777777776643311 134566777777643
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=4.3e-13 Score=129.57 Aligned_cols=197 Identities=25% Similarity=0.308 Sum_probs=159.3
Q ss_pred CCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEE
Q 038739 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLD 112 (477)
Q Consensus 33 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 112 (477)
+.--...|++.|++. .+|..+..+..|+.+.+.+|.+. .+|..+.++..|.+||++.|++ ..+|..+..++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEE
Confidence 444567889999988 67888888889999999999987 7889999999999999999998 56777787774 89999
Q ss_pred ccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739 113 LSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG 192 (477)
Q Consensus 113 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 192 (477)
+++|+++ .+|..++....|..||.+.|.+ ..+|..++.+.+|+.|.+..|++.. .|..+.. -.|..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-
Confidence 9999998 7888888889999999999998 4577788999999999999999884 4555663 45889999999997
Q ss_pred ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCC
Q 038739 193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLN 238 (477)
Q Consensus 193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n 238 (477)
.+|-.|..|+.|++|-|.+|.+......-..-+...-.++|+..-+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 7888999999999999999998754322211222333456666555
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=5.5e-12 Score=112.91 Aligned_cols=135 Identities=20% Similarity=0.199 Sum_probs=86.7
Q ss_pred CCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEE
Q 038739 128 NFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTAL 207 (477)
Q Consensus 128 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 207 (477)
....|+++||++|.++ .+.++..-.|+++.|++++|.+... +.+..+++|+.||+++|.++ .+..+-..+-+++.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3455666666666653 3344555556666666666666532 23556666777777777665 334455566677777
Q ss_pred eCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcch
Q 038739 208 DLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN 270 (477)
Q Consensus 208 ~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~ 270 (477)
.+++|.+..... +..+-+|..||+++|+|..+........+|.|+.+.+.+|.+..+++
T Consensus 358 ~La~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIETLSG----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ehhhhhHhhhhh----hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 777776654433 55666777777777777777666666677778888888888766664
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=4.1e-11 Score=124.86 Aligned_cols=110 Identities=32% Similarity=0.435 Sum_probs=96.6
Q ss_pred CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739 35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114 (477)
Q Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 114 (477)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999998999889999999999999999999999999999999999999
Q ss_pred CCcCcCCCCccccCC-CCCCEEEccCCCCcc
Q 038739 115 FNNFSGEFPWSTGNF-SSLKLLDLRSCGFWG 144 (477)
Q Consensus 115 ~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~~ 144 (477)
+|.+++.+|..+... .++..+++.+|....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999999887653 467788888886533
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=3.1e-12 Score=116.98 Aligned_cols=162 Identities=23% Similarity=0.255 Sum_probs=95.7
Q ss_pred CCCCCCCCEEEccCCCCCCC----ccccccCCCCCCEEEccccc---CCcccc-------ccCCCCCCCCEEecccCcCc
Q 038739 6 LGNLSKLLHLDLSLNELQGE----LPVSVGNLHSLEELDLSANF---LSSEWP-------ISIGNLSSLKELDLSQNRFF 71 (477)
Q Consensus 6 l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~---l~~~~~-------~~~~~l~~L~~L~Ls~n~l~ 71 (477)
+..+..+++|+|++|.+... +...+.+.++|+..++|+-. ....+| .++..+++|++||||+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34577899999999988643 44456778899999998752 222233 34567889999999999886
Q ss_pred ccCCc----ccCCCCCCCEEeCcCCCCCCcccccc-------------cCCCCccEEEccCCcCcCCC----CccccCCC
Q 038739 72 GELPI----SMGNLGSLKVLDLSQNGYFGELPTSI-------------RNLFSLEKLDLSFNNFSGEF----PWSTGNFS 130 (477)
Q Consensus 72 ~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~l-------------~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~ 130 (477)
...+. .+..+..|++|.|.+|.+...-...+ ..-+.|+++..++|++.... ...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 44333 34678999999999998742211121 22345555555555553211 12233344
Q ss_pred CCCEEEccCCCCccc----CCccccCCCCCcEEECCCCcCC
Q 038739 131 SLKLLDLRSCGFWGK----VPHSIGNFTQLQYLHLGSNNFS 167 (477)
Q Consensus 131 ~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 167 (477)
.|+.+.+..|.+... +...+..++.|+.|||.+|.++
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 555555555444211 1123344455555555555443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=8.2e-11 Score=100.93 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=15.3
Q ss_pred CCCCEEEccCCCCcccCCcccc-CCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhh-hcCCCCCEE
Q 038739 130 SSLKLLDLRSCGFWGKVPHSIG-NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL-RNLSQLTAL 207 (477)
Q Consensus 130 ~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L 207 (477)
..+++|+|++|.+... +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.++.. ...+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEE
Confidence 3455555555555322 2233 344555555555555431 1344445555555555555422 1122 234444555
Q ss_pred eCcCCcCc
Q 038739 208 DLAQNSYR 215 (477)
Q Consensus 208 ~L~~n~l~ 215 (477)
++++|++.
T Consensus 94 ~L~~N~I~ 101 (175)
T PF14580_consen 94 YLSNNKIS 101 (175)
T ss_dssp E-TTS---
T ss_pred ECcCCcCC
Confidence 54444444
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=5.2e-11 Score=126.85 Aligned_cols=127 Identities=30% Similarity=0.332 Sum_probs=64.2
Q ss_pred CCCCEEEccCCCCCCCccccccCCCCCCEEEccccc--CCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739 10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANF--LSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87 (477)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 87 (477)
...+...+-+|.+. .++... .+++|++|-+..|. +....+..|..++.|+.|||++|.--+.+|+.++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 34444455444443 222221 22355555555553 333333345555666666665554444555555555566666
Q ss_pred eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccC
Q 038739 88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRS 139 (477)
Q Consensus 88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (477)
+++++.+. .+|..+.++..|.+|++..+.....+|.....+++|++|.+..
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 66555552 4555555555555665555544333444444455555555543
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.05 E-value=1.4e-11 Score=122.75 Aligned_cols=268 Identities=28% Similarity=0.275 Sum_probs=166.4
Q ss_pred CCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeC
Q 038739 10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDL 89 (477)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 89 (477)
+.++.++...+.+...... ...+..++.+++..|.+.. .-..+..+.+|+.|++.+|++.. +...+..+++|++|++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~l 125 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDL 125 (414)
T ss_pred chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheec
Confidence 3445555555544322111 1455666677777777764 22346777788888888887763 3333667788888888
Q ss_pred cCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCC-ccccCCCCCcEEECCCCcCCC
Q 038739 90 SQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP-HSIGNFTQLQYLHLGSNNFSG 168 (477)
Q Consensus 90 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~ 168 (477)
++|.|+.. ..+..++.|+.|++++|.++. + ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..
T Consensus 126 s~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 126 SFNKITKL--EGLSTLTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred cccccccc--cchhhccchhhheeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 88887654 345666678888888888772 2 245557788888888887755433 2 4667788888888887753
Q ss_pred cCCcCCCCCCCCCEEEccCCccccccchhhhcCC--CCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccccc
Q 038739 169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLS--QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKA 246 (477)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~ 246 (477)
...+..+..+..+++..|.++..-+ +..+. +|+.+++++|.+.... ..+..+..+..+++..|++......
T Consensus 201 --i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~---~~~~~~~~l~~l~~~~n~~~~~~~~ 273 (414)
T KOG0531|consen 201 --IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP---EGLENLKNLPVLDLSSNRISNLEGL 273 (414)
T ss_pred --ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc---ccccccccccccchhhccccccccc
Confidence 2234444555555777777653221 22222 3778888888776542 1156677888888888866555443
Q ss_pred CCccCcCcccEEEccCCCCCC---cc-h-hhhcCCCcCEEeccCCcccccCCcc
Q 038739 247 TSDTTSQKLKYIGLRSCNLTK---FP-N-FLQNQHHLRFMDLSDNRIQGKVPKW 295 (477)
Q Consensus 247 ~~~~~~~~L~~L~L~~n~l~~---~p-~-~l~~~~~L~~L~Ls~n~i~~~~p~~ 295 (477)
.. .+.+..+....+.+.. .. . .....+.++.+.+..|.+....+.+
T Consensus 274 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (414)
T KOG0531|consen 274 ER---LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSLD 324 (414)
T ss_pred cc---cchHHHhccCcchhcchhhhhccccccccccccccccccCccccccccc
Confidence 32 3456666666666531 11 1 1455678888888888887655433
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=1.3e-10 Score=123.92 Aligned_cols=273 Identities=25% Similarity=0.312 Sum_probs=168.2
Q ss_pred CCCCCCEEEcccccCCccccccCCCCCCCCEEecccCc--CcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR--FFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE 109 (477)
Q Consensus 32 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 109 (477)
.....+...+-+|.+.. ++.. ..+++|++|-+..|. +.......|..++.|++|||++|.-.+.+|..++.+-+|+
T Consensus 521 ~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 34677888888887763 3333 344589999999986 5434455588899999999999877788999999999999
Q ss_pred EEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC--CcCCcCCCCCCCCCEEEccC
Q 038739 110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS--GDLLGPIGNLRSLEAINVAK 187 (477)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~ 187 (477)
+|+++++.+. .+|..+.++..|.+|++..+.....+|.....+++|++|.+...... ......+..+.+|+.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999999998 89999999999999999988765666777777999999998776422 22223344555555555533
Q ss_pred CccccccchhhhcCCCCC----EEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCcc----C-cCcccEE
Q 038739 188 CNFSGQITSSLRNLSQLT----ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDT----T-SQKLKYI 258 (477)
Q Consensus 188 n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~----~-~~~L~~L 258 (477)
... .+...+..+..|. .+.+.++...... ..+..+.+|+.|.+.++.+.......... . ++++..+
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~---~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLI---SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKV 752 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccceee---cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHH
Confidence 322 1111122222222 2222222221111 12556677777777777554222211110 1 3344444
Q ss_pred EccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcc
Q 038739 259 GLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLL 314 (477)
Q Consensus 259 ~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 314 (477)
...+|.....+.+....++|+.|.+..+.....+..... .+..++.+-+..+.+
T Consensus 753 ~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k--~~~~l~~~i~~f~~~ 806 (889)
T KOG4658|consen 753 SILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLK--ALLELKELILPFNKL 806 (889)
T ss_pred HhhccccccccchhhccCcccEEEEecccccccCCCHHH--HhhhcccEEeccccc
Confidence 555555544455555667777777777665544333332 344444444444333
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.03 E-value=1.9e-11 Score=121.86 Aligned_cols=266 Identities=25% Similarity=0.278 Sum_probs=187.7
Q ss_pred CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEc
Q 038739 34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDL 113 (477)
Q Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 113 (477)
+.++.++...+.+...-.. ...+..++.+++..|.+.. +-..+..+.+|+.|++.+|++... ...+..+++|++|++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~l 125 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDL 125 (414)
T ss_pred chhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheec
Confidence 4566666666654432211 1566778888899998863 344577889999999999998644 233778999999999
Q ss_pred cCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCC-cCCCCCCCCCEEEccCCcccc
Q 038739 114 SFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL-GPIGNLRSLEAINVAKCNFSG 192 (477)
Q Consensus 114 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~ 192 (477)
++|.|+... .+..++.|+.|++++|.+... ..+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+..
T Consensus 126 s~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 126 SFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 999998443 466677899999999998543 456668999999999999985443 2 4678899999999998863
Q ss_pred ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCC--CCEEeCCCCCCcccc-ccCCccCcCcccEEEccCCCCCCcc
Q 038739 193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKN--LEFLGLSLNRLSVLT-KATSDTTSQKLKYIGLRSCNLTKFP 269 (477)
Q Consensus 193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~--L~~L~ls~n~i~~~~-~~~~~~~~~~L~~L~L~~n~l~~~p 269 (477)
...+..+..+..+++..|.+....+ +..... |+.+++++|++...+ ... .+..+..+++.++.+..+.
T Consensus 201 --i~~~~~~~~l~~~~l~~n~i~~~~~----l~~~~~~~L~~l~l~~n~i~~~~~~~~---~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 201 --IEGLDLLKKLVLLSLLDNKISKLEG----LNELVMLHLRELYLSGNRISRSPEGLE---NLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred --ccchHHHHHHHHhhcccccceeccC----cccchhHHHHHHhcccCcccccccccc---ccccccccchhhccccccc
Confidence 2344455566666888888775544 222333 889999999877663 222 4567889999999886653
Q ss_pred hhhhcCCCcCEEeccCCccccc---CCccCCcccCCCCCeEEecCCcccccC
Q 038739 270 NFLQNQHHLRFMDLSDNRIQGK---VPKWLLDPNMQNLNGFNFSHNLLTGFD 318 (477)
Q Consensus 270 ~~l~~~~~L~~L~Ls~n~i~~~---~p~~~~~~~l~~L~~L~Ls~N~l~~~~ 318 (477)
. +...+.+..+....|.+... .... .....+.++.+.+..|.+....
T Consensus 272 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 272 G-LERLPKLSELWLNDNKLALSEAISQEY-ITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred c-ccccchHHHhccCcchhcchhhhhccc-cccccccccccccccCcccccc
Confidence 2 44566777777888876632 1111 0125678888888888877654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=3.7e-10 Score=79.69 Aligned_cols=60 Identities=48% Similarity=0.524 Sum_probs=35.1
Q ss_pred CCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCc
Q 038739 10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR 69 (477)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 69 (477)
|+|++|++++|+++...+..|.++++|++|++++|+++...+.+|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345566666666654444555666666666666666655555555666666666666554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=6.4e-10 Score=78.46 Aligned_cols=60 Identities=45% Similarity=0.537 Sum_probs=37.4
Q ss_pred CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCC
Q 038739 34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG 93 (477)
Q Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 93 (477)
++|++|++++|+++...+..|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356666666666665555566666666666666666665555566666666666666664
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=9e-10 Score=109.79 Aligned_cols=126 Identities=30% Similarity=0.205 Sum_probs=82.7
Q ss_pred cccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCC
Q 038739 254 KLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPV 333 (477)
Q Consensus 254 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~ 333 (477)
.|.+.+.+.|.+..+..++.-++.|+.|||++|++++.. .+. .++.|++|||++|+++....- ..
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr--~l~~LkhLDlsyN~L~~vp~l-----------~~ 229 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLR--RLPKLKHLDLSYNCLRHVPQL-----------SM 229 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHH--hcccccccccccchhcccccc-----------ch
Confidence 455666666666666666666667777777777766443 333 566777777777776643210 00
Q ss_pred CCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCC-chhhhcccccceeecCCCcC
Q 038739 334 PPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP-QCLGNFSDELLVLDLQGNNL 397 (477)
Q Consensus 334 ~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p-~~l~~l~~~L~~L~Ls~N~l 397 (477)
.-..|..|.+++|.++. -..+.++++|+.||+++|-|.+.-. .-++.+. +|..|+|.||++
T Consensus 230 ~gc~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 230 VGCKLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNPL 291 (1096)
T ss_pred hhhhheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCcc
Confidence 11136677777777764 2357889999999999998875432 2356676 899999999987
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=9.7e-10 Score=98.66 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=111.2
Q ss_pred CCCcEEECCCCcCCC-cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCE
Q 038739 154 TQLQYLHLGSNNFSG-DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEF 232 (477)
Q Consensus 154 ~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 232 (477)
+.|+++||+...++. .....+..|.+|+.|.+.++++.+.+...++.-.+|+.|+++.+.--........+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358899999877763 2233466788999999999999888888888889999999988764433444446888999999
Q ss_pred EeCCCCCCccccccCC-ccCcCcccEEEccCCCC----CCcchhhhcCCCcCEEeccCCc-ccccCCccCCcccCCCCCe
Q 038739 233 LGLSLNRLSVLTKATS-DTTSQKLKYIGLRSCNL----TKFPNFLQNQHHLRFMDLSDNR-IQGKVPKWLLDPNMQNLNG 306 (477)
Q Consensus 233 L~ls~n~i~~~~~~~~-~~~~~~L~~L~L~~n~l----~~~p~~l~~~~~L~~L~Ls~n~-i~~~~p~~~~~~~l~~L~~ 306 (477)
|+++.+.+........ ....++|+.|+++++.- ..+......|++|..||||+|. ++......+. .++.|++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~--kf~~L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--KFNYLQH 342 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH--hcchhee
Confidence 9999885432221111 11456888999988742 3444445679999999999885 3332233344 7888888
Q ss_pred EEecCCc
Q 038739 307 FNFSHNL 313 (477)
Q Consensus 307 L~Ls~N~ 313 (477)
|.++.|.
T Consensus 343 lSlsRCY 349 (419)
T KOG2120|consen 343 LSLSRCY 349 (419)
T ss_pred eehhhhc
Confidence 8888774
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.4e-08 Score=91.28 Aligned_cols=188 Identities=19% Similarity=0.233 Sum_probs=103.6
Q ss_pred CCCCCCEEeCcCCCCCC--cccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCccc-CCccccCCCCC
Q 038739 80 NLGSLKVLDLSQNGYFG--ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGK-VPHSIGNFTQL 156 (477)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L 156 (477)
.++.++.+||.+|.++. .+...+.+++.|++|+++.|++...|...-....+|+.|-|.+..+.-. ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35667777777777752 2334456777788888888777644432223556777777776655322 22344566777
Q ss_pred cEEECCCCcCCCcCC--cCCCC-CCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEE
Q 038739 157 QYLHLGSNNFSGDLL--GPIGN-LRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFL 233 (477)
Q Consensus 157 ~~L~l~~n~l~~~~~--~~l~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 233 (477)
+.|+++.|.+..... ..... -+.+++++...|.. .+..+-|++ -.-++++..+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~---------------~~w~~~~~l---------~r~Fpnv~sv 204 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE---------------QLWLNKNKL---------SRIFPNVNSV 204 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHH---------------HHHHHHHhH---------Hhhcccchhe
Confidence 777777774432110 00110 11233333322221 111111111 2234566666
Q ss_pred eCCCCCCccccccCCccCcCcccEEEccCCCCCCcc--hhhhcCCCcCEEeccCCccccc
Q 038739 234 GLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP--NFLQNQHHLRFMDLSDNRIQGK 291 (477)
Q Consensus 234 ~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~i~~~ 291 (477)
-+..|.+...........++.+.-|+|+.++|.++. +.+..++.|..|.++++.+.+.
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 666665555544444445566667777777776653 5677778888888888877643
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.2e-08 Score=91.70 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=46.4
Q ss_pred CCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCCh
Q 038739 275 QHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPS 354 (477)
Q Consensus 275 ~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~ 354 (477)
++++..+-+..|.+.+.....-. ..+|.+..|+|+.|+|... .--+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~s-e~~p~~~~LnL~~~~idsw---------------------------------asvD 243 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGS-EPFPSLSCLNLGANNIDSW---------------------------------ASVD 243 (418)
T ss_pred cccchheeeecCcccchhhcccC-CCCCcchhhhhcccccccH---------------------------------HHHH
Confidence 45666666666666544322211 1455555666666555432 1124
Q ss_pred hhhccCCCCeEeCCCCcCcccCCc------hhhhcccccceeecC
Q 038739 355 WICNLNILESLVLSHNNLSGLLPQ------CLGNFSDELLVLDLQ 393 (477)
Q Consensus 355 ~~~~l~~L~~LdLs~N~l~~~~p~------~l~~l~~~L~~L~Ls 393 (477)
.+.++++|..|.+++|.+.+.+-. -++.++ .++.|+=+
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~-~v~vLNGs 287 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT-KVQVLNGS 287 (418)
T ss_pred HHcCCchhheeeccCCcccccccCCcceEEEEeecc-ceEEecCc
Confidence 566677788888888877644321 145566 67766633
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=2.8e-09 Score=106.34 Aligned_cols=127 Identities=24% Similarity=0.230 Sum_probs=75.8
Q ss_pred CccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEcc
Q 038739 107 SLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVA 186 (477)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 186 (477)
.|...+.++|.+. .+..++.-++.++.|+|++|+++.. +.+..+++|++|||+.|.++...--....|. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4666666666665 4555666666777777777776443 3566677777777777776643222333343 6777777
Q ss_pred CCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCC
Q 038739 187 KCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240 (477)
Q Consensus 187 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i 240 (477)
+|.++.. ..+.++.+|+.||+++|-+.+..... .+..+..|+.|+|.+|.+
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCcc
Confidence 7766532 24556666777777777665543322 244455666666666654
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.6e-09 Score=94.36 Aligned_cols=177 Identities=21% Similarity=0.228 Sum_probs=95.9
Q ss_pred CccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCc-CCCc-CCcCCCCCCCCCEE
Q 038739 107 SLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN-FSGD-LLGPIGNLRSLEAI 183 (477)
Q Consensus 107 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L 183 (477)
.|++|||++..++. ..-..+..|.+|+.|.+.++++...+...++...+|+.|+++.+. ++.. ....+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666665542 122234556666667776666666666666666667777766643 3221 11124566677777
Q ss_pred EccCCccccccchh-hh-cCCCCCEEeCcCCcCc-cccchhhhhcCCCCCCEEeCCCCCCcccccc--CCccCcCcccEE
Q 038739 184 NVAKCNFSGQITSS-LR-NLSQLTALDLAQNSYR-GMIELDVLLTSWKNLEFLGLSLNRLSVLTKA--TSDTTSQKLKYI 258 (477)
Q Consensus 184 ~l~~n~l~~~~~~~-l~-~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~--~~~~~~~~L~~L 258 (477)
+++.|.+....... +. --++|+.|+++++.-. +..........+++|..||+++| ..+... .....++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~--v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS--VMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc--cccCchHHHHHHhcchheee
Confidence 77776654322111 11 1245666777665321 11122223456777777777776 222221 112256677777
Q ss_pred EccCCCCCCcc---hhhhcCCCcCEEeccCC
Q 038739 259 GLRSCNLTKFP---NFLQNQHHLRFMDLSDN 286 (477)
Q Consensus 259 ~L~~n~l~~~p---~~l~~~~~L~~L~Ls~n 286 (477)
.++.|..- +| -.+...|+|.+||+-++
T Consensus 344 SlsRCY~i-~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYDI-IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence 77777541 12 12456778888887665
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.45 E-value=1.4e-08 Score=80.90 Aligned_cols=112 Identities=24% Similarity=0.234 Sum_probs=54.8
Q ss_pred cccEEEccCCCCCCcchhh-hcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCC
Q 038739 254 KLKYIGLRSCNLTKFPNFL-QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLP 332 (477)
Q Consensus 254 ~L~~L~L~~n~l~~~p~~l-~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~ 332 (477)
.|+..++++|.+..+|..| ..++.++.|++++|+|+ .+|..+. .++.|+.|+++.|.+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~A--am~aLr~lNl~~N~l~----------------- 113 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELA--AMPALRSLNLRFNPLN----------------- 113 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHh--hhHHhhhcccccCccc-----------------
Confidence 3444455555555554333 23334555555555555 3344344 4455555555554443
Q ss_pred CCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCC
Q 038739 333 VPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCES 405 (477)
Q Consensus 333 ~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~ 405 (477)
..|.-+..+.+|-.||..+|.+. ++|..+-. ++..-..++.++++.+..|...
T Consensus 114 ------------------~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~-s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 114 ------------------AEPRVIAPLIKLDMLDSPENARA-EIDVDLFY-SSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred ------------------cchHHHHHHHhHHHhcCCCCccc-cCcHHHhc-cccHHHHHhcCCcccccCcccc
Confidence 33455555666666666666665 44433211 1133344555666666555443
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=5.2e-08 Score=77.75 Aligned_cols=105 Identities=25% Similarity=0.396 Sum_probs=77.9
Q ss_pred cccEEEccCCCCCCcchhh---hcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCC
Q 038739 254 KLKYIGLRSCNLTKFPNFL---QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGP 330 (477)
Q Consensus 254 ~L~~L~L~~n~l~~~p~~l---~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~ 330 (477)
.+-.++|++|.+..+++.. .....|+..+|++|.+.+ .|..|.. .++.++++++++|.++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~-kf~t~t~lNl~~neis--------------- 90 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTI-KFPTATTLNLANNEIS--------------- 90 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhh-ccchhhhhhcchhhhh---------------
Confidence 4556778888887666544 445567777888888873 4443331 4455666666665554
Q ss_pred CCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcC
Q 038739 331 LPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397 (477)
Q Consensus 331 ~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l 397 (477)
.+|..++.++.|+.|+++.|.+. ..|+.+..+. ++-+|+..+|.+
T Consensus 91 --------------------dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~-~l~~Lds~~na~ 135 (177)
T KOG4579|consen 91 --------------------DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLI-KLDMLDSPENAR 135 (177)
T ss_pred --------------------hchHHHhhhHHhhhcccccCccc-cchHHHHHHH-hHHHhcCCCCcc
Confidence 57889999999999999999998 7788888888 899999988875
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=1.4e-07 Score=84.02 Aligned_cols=86 Identities=28% Similarity=0.393 Sum_probs=42.5
Q ss_pred CCCCCEEEccCCCCCCCcc----ccccCCCCCCEEEcccccCC---ccc-------cccCCCCCCCCEEecccCcCcccC
Q 038739 9 LSKLLHLDLSLNELQGELP----VSVGNLHSLEELDLSANFLS---SEW-------PISIGNLSSLKELDLSQNRFFGEL 74 (477)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~---~~~-------~~~~~~l~~L~~L~Ls~n~l~~~~ 74 (477)
+..++.++||+|-|...-. ..+.+-++|+..+++.-... ..+ ..++.+||+|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4456666666666653322 22334455666665543111 111 123445666666666666554333
Q ss_pred Cc----ccCCCCCCCEEeCcCCCC
Q 038739 75 PI----SMGNLGSLKVLDLSQNGY 94 (477)
Q Consensus 75 ~~----~~~~l~~L~~L~Ls~n~l 94 (477)
|. .+++-+.|.+|.+++|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC
Confidence 32 234445566666666554
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.16 E-value=7.2e-07 Score=79.52 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=12.6
Q ss_pred CCCcCEEeccCCcccccC
Q 038739 275 QHHLRFMDLSDNRIQGKV 292 (477)
Q Consensus 275 ~~~L~~L~Ls~n~i~~~~ 292 (477)
.++|..|-..+|.+.+.+
T Consensus 271 ~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 271 VPNLMPLPGDYNERRGGI 288 (388)
T ss_pred CCCccccccchhhhcCce
Confidence 567788888888766543
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=4.5e-06 Score=53.89 Aligned_cols=37 Identities=46% Similarity=0.629 Sum_probs=20.5
Q ss_pred CCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCC
Q 038739 10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLS 47 (477)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 47 (477)
++|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35566666666665 34444666666666666666655
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=5.5e-06 Score=53.48 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=27.6
Q ss_pred cccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccc
Q 038739 254 KLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQG 290 (477)
Q Consensus 254 ~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~ 290 (477)
+|++|++++|+|+.+|..+.++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 5778888888888887767788888888888887773
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.98 E-value=1e-05 Score=69.21 Aligned_cols=86 Identities=26% Similarity=0.218 Sum_probs=40.1
Q ss_pred hhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcch----hhh
Q 038739 198 LRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPN----FLQ 273 (477)
Q Consensus 198 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~----~l~ 273 (477)
|..++.|..|.+.+|+++.+.+.- ...+++|+.|.+.+|+|..+++......+++|++|.+-+|.++.-.. .+.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCCcceeeccch--hhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEE
Confidence 334444444444444444433322 23344455555555555555544444444555555555555533321 233
Q ss_pred cCCCcCEEeccC
Q 038739 274 NQHHLRFMDLSD 285 (477)
Q Consensus 274 ~~~~L~~L~Ls~ 285 (477)
.+++|+.||++.
T Consensus 138 klp~l~~LDF~k 149 (233)
T KOG1644|consen 138 KLPSLRTLDFQK 149 (233)
T ss_pred ecCcceEeehhh
Confidence 455555555554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=2.8e-05 Score=75.26 Aligned_cols=135 Identities=16% Similarity=0.255 Sum_probs=86.0
Q ss_pred hcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCC-CCCCcchhhhcCCCcCEEeccCC-cccccCCccCCcccC
Q 038739 224 LTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSC-NLTKFPNFLQNQHHLRFMDLSDN-RIQGKVPKWLLDPNM 301 (477)
Q Consensus 224 ~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n-~l~~~p~~l~~~~~L~~L~Ls~n-~i~~~~p~~~~~~~l 301 (477)
+..+.+++.|++++|.++.++.. +++|++|.+++| .++.+|..+ .++|+.|++++| .+. .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~L-----P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVL-----PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCC-----CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc--------
Confidence 44578999999999988777632 357999999986 457788655 468999999998 443 333
Q ss_pred CCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCc--cCCChhhhcc-CCCCeEeCCCCcCcccCCc
Q 038739 302 QNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLT--GEIPSWICNL-NILESLVLSHNNLSGLLPQ 378 (477)
Q Consensus 302 ~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~--~~~p~~~~~l-~~L~~LdLs~N~l~~~~p~ 378 (477)
++|+.|+++.+.... ++..+++|+.|.+.+++.. ..+|. .+ ++|++|++++|... ..|.
T Consensus 112 ~sLe~L~L~~n~~~~--------------L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~ 173 (426)
T PRK15386 112 ESVRSLEIKGSATDS--------------IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPE 173 (426)
T ss_pred cccceEEeCCCCCcc--------------cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCcc
Confidence 457778887766542 2333456666666432211 01111 12 46777777777655 3443
Q ss_pred hhhhcccccceeecCCC
Q 038739 379 CLGNFSDELLVLDLQGN 395 (477)
Q Consensus 379 ~l~~l~~~L~~L~Ls~N 395 (477)
. +|++|+.|+++.|
T Consensus 174 ~---LP~SLk~L~ls~n 187 (426)
T PRK15386 174 K---LPESLQSITLHIE 187 (426)
T ss_pred c---ccccCcEEEeccc
Confidence 2 3347777777665
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.97 E-value=2.5e-05 Score=64.15 Aligned_cols=84 Identities=19% Similarity=0.195 Sum_probs=30.4
Q ss_pred cCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739 5 SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL 84 (477)
Q Consensus 5 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 84 (477)
+|.++++|+.+.+.. .+.......|.++++|+.+.+.++ +......+|.++++|+.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344445555555543 233333334445545555555443 3333333444444455555533 2222222334444444
Q ss_pred CEEeCcC
Q 038739 85 KVLDLSQ 91 (477)
Q Consensus 85 ~~L~Ls~ 91 (477)
+.+++..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 4444433
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=2.8e-05 Score=75.28 Aligned_cols=136 Identities=22% Similarity=0.255 Sum_probs=85.6
Q ss_pred CCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccC-cCcccCCcccCCCCCCC
Q 038739 7 GNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQN-RFFGELPISMGNLGSLK 85 (477)
Q Consensus 7 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 85 (477)
..++++++|++++|.++ .+|. --.+|++|.+++|.--..+|..+ .++|++|++++| .+. .+| .+|+
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccc
Confidence 45688999999999887 4451 12469999998854434556544 257999999988 443 444 3577
Q ss_pred EEeCcCCCCCCcccccccCC-CCccEEEccCCcCc--CCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECC
Q 038739 86 VLDLSQNGYFGELPTSIRNL-FSLEKLDLSFNNFS--GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLG 162 (477)
Q Consensus 86 ~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 162 (477)
.|+++.+.... +..+ ++|+.|.+.+++.. ..+|..+ .++|++|++++|... ..|..+. .+|+.|+++
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 77777655421 2222 25777777543311 1112111 268999999998764 3444444 589999998
Q ss_pred CCc
Q 038739 163 SNN 165 (477)
Q Consensus 163 ~n~ 165 (477)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 764
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.87 E-value=4.3e-05 Score=62.78 Aligned_cols=123 Identities=19% Similarity=0.166 Sum_probs=50.5
Q ss_pred ccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCC
Q 038739 28 VSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFS 107 (477)
Q Consensus 28 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 107 (477)
..|.++++|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......|.++++|+.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3466666777777664 355455556666666777766654 4434444566666666666654 332233345555666
Q ss_pred ccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCC
Q 038739 108 LEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL 156 (477)
Q Consensus 108 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 156 (477)
|+.+++..+ +.......+.++ +|+.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666543 332333344444 555555543 2223333444444443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=4e-05 Score=65.69 Aligned_cols=104 Identities=20% Similarity=0.209 Sum_probs=46.1
Q ss_pred cEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCC
Q 038739 157 QYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLS 236 (477)
Q Consensus 157 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls 236 (477)
..+|+++|.+.. ...|..++.|.+|.+.+|.|+.+.|.--.-+++|+.|.+.+|.+....... -+..||.|++|.+-
T Consensus 45 d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 45 DAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLTLL 121 (233)
T ss_pred ceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceeeec
Confidence 344444444431 123344444445555555444433333333444555555555444322221 14445555555555
Q ss_pred CCCCccccccCCcc--CcCcccEEEccCC
Q 038739 237 LNRLSVLTKATSDT--TSQKLKYIGLRSC 263 (477)
Q Consensus 237 ~n~i~~~~~~~~~~--~~~~L~~L~L~~n 263 (477)
+|.+.....+-... .+|+|+.||+..-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 55444333322221 4556666665543
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=6.3e-06 Score=86.29 Aligned_cols=61 Identities=11% Similarity=0.241 Sum_probs=30.6
Q ss_pred CcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccc-cCCccCCcccCCCCCeEEecCCcc
Q 038739 251 TSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQG-KVPKWLLDPNMQNLNGFNFSHNLL 314 (477)
Q Consensus 251 ~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~-~~p~~~~~~~l~~L~~L~Ls~N~l 314 (477)
.+++|..||+++++++.+ ..++.+++|+.|.+.+=.+.. ..-..++ .+.+|+.||+|....
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF--~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF--NLKKLRVLDISRDKN 232 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh--cccCCCeeecccccc
Confidence 445555555555555544 345555666665555544432 1111222 566666666665443
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.61 E-value=2.1e-06 Score=81.17 Aligned_cols=36 Identities=17% Similarity=0.034 Sum_probs=21.3
Q ss_pred ccceeecCCCcCc-cCCChhhhccCCCCeEeCCCCcC
Q 038739 337 GTITYLASNNSLT-GEIPSWICNLNILESLVLSHNNL 372 (477)
Q Consensus 337 ~l~~L~ls~n~l~-~~~p~~~~~l~~L~~LdLs~N~l 372 (477)
.+..+.++++..+ +..-+.+..+++|+.+++-.++-
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 3444444444432 23445566778888888888754
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=2.6e-05 Score=81.70 Aligned_cols=134 Identities=21% Similarity=0.276 Sum_probs=67.1
Q ss_pred CCCCEEecccCcCc-ccCCccc-CCCCCCCEEeCcCCCCCCc-ccccccCCCCccEEEccCCcCcCCCCccccCCCCCCE
Q 038739 58 SSLKELDLSQNRFF-GELPISM-GNLGSLKVLDLSQNGYFGE-LPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKL 134 (477)
Q Consensus 58 ~~L~~L~Ls~n~l~-~~~~~~~-~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 134 (477)
.+|++||+++.... ...|..+ ..+|+|+.|.+++-.+... .-....++++|..||+|+++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666664332 1112222 2356666666666444221 223344566666666666666522 45556666666
Q ss_pred EEccCCCCcc-cCCccccCCCCCcEEECCCCcCCCcC------CcCCCCCCCCCEEEccCCccccc
Q 038739 135 LDLRSCGFWG-KVPHSIGNFTQLQYLHLGSNNFSGDL------LGPIGNLRSLEAINVAKCNFSGQ 193 (477)
Q Consensus 135 L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~------~~~l~~l~~L~~L~l~~n~l~~~ 193 (477)
|.+.+=.+.. ..-..+.++++|+.||+|........ .+.-..+|+|+.||.|+..+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 6665544322 11123455666666666665433211 11122356677777776655543
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.53 E-value=2.5e-06 Score=80.56 Aligned_cols=280 Identities=20% Similarity=0.137 Sum_probs=129.3
Q ss_pred CccEEEccCCcCcCCCC--ccccCCCCCCEEEccCCCCcc-cCCccc-cCCCCCcEEECCCC-cCCCcCCc-CCCCCCCC
Q 038739 107 SLEKLDLSFNNFSGEFP--WSTGNFSSLKLLDLRSCGFWG-KVPHSI-GNFTQLQYLHLGSN-NFSGDLLG-PIGNLRSL 180 (477)
Q Consensus 107 ~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~~~~-~~~~~l-~~l~~L~~L~l~~n-~l~~~~~~-~l~~l~~L 180 (477)
.|+.|.+.++.-.+.-+ ....+++++++|++.+|.... ..-..+ ..+++|++|++..| .++..... ....|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45666666554322111 123356666666666654211 100111 24556666666663 23322211 22346666
Q ss_pred CEEEccCCc-cccc-cchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCC-CccccccCCccCcCcccE
Q 038739 181 EAINVAKCN-FSGQ-ITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR-LSVLTKATSDTTSQKLKY 257 (477)
Q Consensus 181 ~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~~~~~L~~ 257 (477)
++++++.|. +++. +.....+++.++.+.+.++.-.+.......-..+..+..+++.++. ++..+.......+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 666666663 2221 1223345555555555554322222222122334445555555541 111111111225566777
Q ss_pred EEccCCCC-CCcc--hhhhcCCCcCEEeccCCc-ccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCC
Q 038739 258 IGLRSCNL-TKFP--NFLQNQHHLRFMDLSDNR-IQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPV 333 (477)
Q Consensus 258 L~L~~n~l-~~~p--~~l~~~~~L~~L~Ls~n~-i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~ 333 (477)
|+.+++.- +..+ .--.++++|+.+.++.++ +++.-...+. .+++.|+.+++..+.....- ....+..
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~--------tL~sls~ 369 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDG--------TLASLSR 369 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhh--------hHhhhcc
Confidence 77766643 2221 223456777777777775 3322222222 15566776666665432110 0011223
Q ss_pred CCCccceeecCCCcCccCC-----ChhhhccCCCCeEeCCCCcCccc-CCchhhhcccccceeecCCCc
Q 038739 334 PPPGTITYLASNNSLTGEI-----PSWICNLNILESLVLSHNNLSGL-LPQCLGNFSDELLVLDLQGNN 396 (477)
Q Consensus 334 ~~~~l~~L~ls~n~l~~~~-----p~~~~~l~~L~~LdLs~N~l~~~-~p~~l~~l~~~L~~L~Ls~N~ 396 (477)
..+.++.+.++++.....- ...-+.+..|+.+.|+++..+.. .-..+...+ .|+.+++-+++
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~-~Leri~l~~~q 437 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR-NLERIELIDCQ 437 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc-ccceeeeechh
Confidence 3455666666665433111 22234567788888888766422 223344444 67776666654
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=6e-05 Score=67.38 Aligned_cols=112 Identities=29% Similarity=0.217 Sum_probs=75.3
Q ss_pred ccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccC--cCcccCCcccCCCCCCCEEeCcCCCCCCc-ccccc
Q 038739 26 LPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQN--RFFGELPISMGNLGSLKVLDLSQNGYFGE-LPTSI 102 (477)
Q Consensus 26 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l 102 (477)
+......+..|+.|++.+..++.. ..|-.+++|++|.++.| ++.+.++-....+++|++|++++|++... .-..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 444555667788888888777643 34667888999999999 55555555556679999999999987521 01234
Q ss_pred cCCCCccEEEccCCcCcCCCC---ccccCCCCCCEEEccC
Q 038739 103 RNLFSLEKLDLSFNNFSGEFP---WSTGNFSSLKLLDLRS 139 (477)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~ 139 (477)
..+.+|..|++.+|..+.... ..|.-+++|++|+-..
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 566778888888887764211 2344567787776544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.45 E-value=9.5e-05 Score=66.13 Aligned_cols=107 Identities=25% Similarity=0.350 Sum_probs=58.4
Q ss_pred CCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCccc
Q 038739 177 LRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLK 256 (477)
Q Consensus 177 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~ 256 (477)
...|+.+.+.+..++. -..+-.+++|++|.++.|..............+++|+++++++|+|+.+........+.+|.
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444444444444432 11234456666777777633322222222455577777777777776655555444556677
Q ss_pred EEEccCCCCCCcc----hhhhcCCCcCEEeccC
Q 038739 257 YIGLRSCNLTKFP----NFLQNQHHLRFMDLSD 285 (477)
Q Consensus 257 ~L~L~~n~l~~~p----~~l~~~~~L~~L~Ls~ 285 (477)
.|++.+|..+.+- ..+.-+++|++||-..
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 7777777665442 2344566666665443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.04 E-value=6.2e-05 Score=76.88 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=9.5
Q ss_pred hhcCCCCCEEeCcCCc
Q 038739 198 LRNLSQLTALDLAQNS 213 (477)
Q Consensus 198 l~~l~~L~~L~L~~n~ 213 (477)
...+++++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 4456666666666655
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.97 E-value=7e-05 Score=76.50 Aligned_cols=80 Identities=25% Similarity=0.281 Sum_probs=39.2
Q ss_pred CCCCCCCCEEEccCCcccccc-chhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCcc-C
Q 038739 174 IGNLRSLEAINVAKCNFSGQI-TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDT-T 251 (477)
Q Consensus 174 l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~-~ 251 (477)
...++.++.+.+..+...... ...+.+++.|+ ..+.. .......++.|+++.+............ .
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~-----------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~ 425 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL-----------RLCRSDSLRVLNLSDCRLVTDKGLRCLADS 425 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH-----------HhccCCccceEecccCccccccchHHHhhh
Confidence 456777888888777643322 24455666552 22111 1222233777777776322222111111 1
Q ss_pred cCcccEEEccCCCC
Q 038739 252 SQKLKYIGLRSCNL 265 (477)
Q Consensus 252 ~~~L~~L~L~~n~l 265 (477)
+..+..+++.++..
T Consensus 426 ~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRV 439 (482)
T ss_pred hhccccCCccCccc
Confidence 44566666666544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=8.9e-05 Score=66.71 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=5.1
Q ss_pred hhcCCCcCEEe
Q 038739 272 LQNQHHLRFMD 282 (477)
Q Consensus 272 l~~~~~L~~L~ 282 (477)
+..+|+|+.||
T Consensus 113 LR~LPnLkKLD 123 (388)
T KOG2123|consen 113 LRVLPNLKKLD 123 (388)
T ss_pred HHHcccchhcc
Confidence 33445555544
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.00014 Score=65.45 Aligned_cols=101 Identities=23% Similarity=0.270 Sum_probs=67.9
Q ss_pred CCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc--hhhhcCCCc
Q 038739 201 LSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP--NFLQNQHHL 278 (477)
Q Consensus 201 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p--~~l~~~~~L 278 (477)
+.+.++|++.++.+..+.- ...++.|+.|.|+-|.|+.+.... .|.+|++|+|..|.|..+. ..+.++++|
T Consensus 18 l~~vkKLNcwg~~L~DIsi----c~kMp~lEVLsLSvNkIssL~pl~---rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI----CEKMPLLEVLSLSVNKISSLAPLQ---RCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHHHH----HHhcccceeEEeeccccccchhHH---HHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3455667777776654432 456777777777777665554433 4567888888888887765 467889999
Q ss_pred CEEeccCCcccccCCccCCc---ccCCCCCeEE
Q 038739 279 RFMDLSDNRIQGKVPKWLLD---PNMQNLNGFN 308 (477)
Q Consensus 279 ~~L~Ls~n~i~~~~p~~~~~---~~l~~L~~L~ 308 (477)
+.|.|..|.-.+..+..... ..+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999999877665542210 1467888775
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.21 E-value=0.0016 Score=34.89 Aligned_cols=20 Identities=45% Similarity=0.549 Sum_probs=11.7
Q ss_pred CCCeEeCCCCcCcccCCchhh
Q 038739 361 ILESLVLSHNNLSGLLPQCLG 381 (477)
Q Consensus 361 ~L~~LdLs~N~l~~~~p~~l~ 381 (477)
+|++|||++|+++ .+|..|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666666 5555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.40 E-value=0.0075 Score=32.28 Aligned_cols=12 Identities=67% Similarity=0.736 Sum_probs=4.9
Q ss_pred CCEEEcccccCC
Q 038739 36 LEELDLSANFLS 47 (477)
Q Consensus 36 L~~L~Ls~n~l~ 47 (477)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.31 E-value=0.00015 Score=72.79 Aligned_cols=182 Identities=25% Similarity=0.283 Sum_probs=103.2
Q ss_pred CCEEEcccccCCcccc----ccCCCCCCCCEEecccCcCcccCC----cccCCC-CCCCEEeCcCCCCCCc----ccccc
Q 038739 36 LEELDLSANFLSSEWP----ISIGNLSSLKELDLSQNRFFGELP----ISMGNL-GSLKVLDLSQNGYFGE----LPTSI 102 (477)
Q Consensus 36 L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~L~Ls~n~l~~~----~~~~l 102 (477)
+..|.|.+|.+..... ..+...+.|+.|++++|.+.+.-- ..+... ..+++|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5666666666654322 234556666667777766652211 112222 4456666666666543 33445
Q ss_pred cCCCCccEEEccCCcCcC----CCCccc----cCCCCCCEEEccCCCCcccC----CccccCCCC-CcEEECCCCcCCCc
Q 038739 103 RNLFSLEKLDLSFNNFSG----EFPWST----GNFSSLKLLDLRSCGFWGKV----PHSIGNFTQ-LQYLHLGSNNFSGD 169 (477)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~----~~~~~~----~~l~~L~~L~L~~n~~~~~~----~~~l~~l~~-L~~L~l~~n~l~~~ 169 (477)
.....++.++++.|.+.. .++..+ ....++++|.+++|.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 556667777777776531 112222 23566777777777664221 123344444 66688888877643
Q ss_pred C----CcCCCCC-CCCCEEEccCCcccccc----chhhhcCCCCCEEeCcCCcCccc
Q 038739 170 L----LGPIGNL-RSLEAINVAKCNFSGQI----TSSLRNLSQLTALDLAQNSYRGM 217 (477)
Q Consensus 170 ~----~~~l~~l-~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~ 217 (477)
. ...+..+ ..+++++++.|.++... ...+..++.++.+.++.|.+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 1 1223334 56788888888887543 34556677888888888887643
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.31 E-value=0.024 Score=28.14 Aligned_cols=13 Identities=46% Similarity=0.544 Sum_probs=6.3
Q ss_pred CCCeEeCCCCcCc
Q 038739 361 ILESLVLSHNNLS 373 (477)
Q Consensus 361 ~L~~LdLs~N~l~ 373 (477)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4666666666655
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.18 E-value=0.00026 Score=71.13 Aligned_cols=185 Identities=25% Similarity=0.248 Sum_probs=118.7
Q ss_pred CCEEecccCcCcccC----CcccCCCCCCCEEeCcCCCCCCccc----ccccCC-CCccEEEccCCcCcCC----CCccc
Q 038739 60 LKELDLSQNRFFGEL----PISMGNLGSLKVLDLSQNGYFGELP----TSIRNL-FSLEKLDLSFNNFSGE----FPWST 126 (477)
Q Consensus 60 L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~l~~l-~~L~~L~Ls~n~l~~~----~~~~~ 126 (477)
+..|.|.+|.+.... -..+...+.|+.|++++|.+.+.-. ..+... ..|++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 788888888876432 2345667888899999998863321 222332 5677788888877643 34455
Q ss_pred cCCCCCCEEEccCCCCcc----cCCcccc----CCCCCcEEECCCCcCCCcCC----cCCCCCCC-CCEEEccCCccccc
Q 038739 127 GNFSSLKLLDLRSCGFWG----KVPHSIG----NFTQLQYLHLGSNNFSGDLL----GPIGNLRS-LEAINVAKCNFSGQ 193 (477)
Q Consensus 127 ~~l~~L~~L~L~~n~~~~----~~~~~l~----~l~~L~~L~l~~n~l~~~~~----~~l~~l~~-L~~L~l~~n~l~~~ 193 (477)
.....++.++++.|.+.. .++..+. ...++++|.+++|.++.... ..+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 567788888888887731 1222233 46678889998888763211 12333344 66688888887644
Q ss_pred c----chhhhcC-CCCCEEeCcCCcCccccc--hhhhhcCCCCCCEEeCCCCCCcccc
Q 038739 194 I----TSSLRNL-SQLTALDLAQNSYRGMIE--LDVLLTSWKNLEFLGLSLNRLSVLT 244 (477)
Q Consensus 194 ~----~~~l~~l-~~L~~L~L~~n~l~~~~~--~~~~~~~~~~L~~L~ls~n~i~~~~ 244 (477)
. ...+..+ ..+++++++.|.+..... .......++.++.+.++.|.+....
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 2 2334444 677889999998875432 2234566778899999988665444
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.63 E-value=0.048 Score=27.02 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=3.7
Q ss_pred ccEEEccCCCCC
Q 038739 255 LKYIGLRSCNLT 266 (477)
Q Consensus 255 L~~L~L~~n~l~ 266 (477)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 344444444433
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.20 E-value=0.0011 Score=58.36 Aligned_cols=89 Identities=22% Similarity=0.200 Sum_probs=62.5
Q ss_pred ccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCC
Q 038739 28 VSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFS 107 (477)
Q Consensus 28 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 107 (477)
..+......+.||++.|++.. .-..|+-++.|..||++.|.+. ..|..++++..+..+++..|.. ...|.++...++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccccCC
Confidence 345666777778887777653 2334666677777788777775 6677777777777777777766 466777777788
Q ss_pred ccEEEccCCcCc
Q 038739 108 LEKLDLSFNNFS 119 (477)
Q Consensus 108 L~~L~Ls~n~l~ 119 (477)
++++++-.|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888777777654
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.20 E-value=0.04 Score=30.06 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=11.0
Q ss_pred CCCCeEeCCCCcCcccCCc
Q 038739 360 NILESLVLSHNNLSGLLPQ 378 (477)
Q Consensus 360 ~~L~~LdLs~N~l~~~~p~ 378 (477)
++|++|+|++|+|++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 5677777777777654443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.29 E-value=0.16 Score=28.23 Aligned_cols=19 Identities=53% Similarity=0.586 Sum_probs=14.0
Q ss_pred cCCCCeEeCCCCcCcccCCc
Q 038739 359 LNILESLVLSHNNLSGLLPQ 378 (477)
Q Consensus 359 l~~L~~LdLs~N~l~~~~p~ 378 (477)
+++|++|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 467888888888888 4444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.29 E-value=0.16 Score=28.23 Aligned_cols=19 Identities=53% Similarity=0.586 Sum_probs=14.0
Q ss_pred cCCCCeEeCCCCcCcccCCc
Q 038739 359 LNILESLVLSHNNLSGLLPQ 378 (477)
Q Consensus 359 l~~L~~LdLs~N~l~~~~p~ 378 (477)
+++|++|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 467888888888888 4444
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.34 E-value=0.0042 Score=54.77 Aligned_cols=89 Identities=27% Similarity=0.262 Sum_probs=70.8
Q ss_pred ccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCC
Q 038739 52 ISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSS 131 (477)
Q Consensus 52 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 131 (477)
..+......+.||++.|++. ..-..|.-++.|..||++.|.+ ...|..+.....+..+++..|..+ ..|.++...+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34566677889999998876 4455667778888899998887 467778888888888888888887 78888989999
Q ss_pred CCEEEccCCCCc
Q 038739 132 LKLLDLRSCGFW 143 (477)
Q Consensus 132 L~~L~L~~n~~~ 143 (477)
++++++.++.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999888764
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.24 E-value=0.35 Score=26.80 Aligned_cols=14 Identities=50% Similarity=0.596 Sum_probs=6.8
Q ss_pred CCCCEEEccCCCCC
Q 038739 10 SKLLHLDLSLNELQ 23 (477)
Q Consensus 10 ~~L~~L~L~~n~l~ 23 (477)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555444
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.24 E-value=0.35 Score=26.80 Aligned_cols=14 Identities=50% Similarity=0.596 Sum_probs=6.8
Q ss_pred CCCCEEEccCCCCC
Q 038739 10 SKLLHLDLSLNELQ 23 (477)
Q Consensus 10 ~~L~~L~L~~n~l~ 23 (477)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555444
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=88.79 E-value=2.4 Score=41.86 Aligned_cols=88 Identities=17% Similarity=0.057 Sum_probs=42.4
Q ss_pred CCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccc---cccCC----c-cCcCcccEEEccCCCCCCcc----h
Q 038739 203 QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL---TKATS----D-TTSQKLKYIGLRSCNLTKFP----N 270 (477)
Q Consensus 203 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~---~~~~~----~-~~~~~L~~L~L~~n~l~~~p----~ 270 (477)
.+++|....|.+.+..........-+..+.+++....-..+ +.... . ...--+..+.++.|.+..-+ .
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 36666666666554433222233444555555543211000 00000 0 01223666777777764333 2
Q ss_pred hhhcCCCcCEEeccCCcccc
Q 038739 271 FLQNQHHLRFMDLSDNRIQG 290 (477)
Q Consensus 271 ~l~~~~~L~~L~Ls~n~i~~ 290 (477)
.+..-+.+..|++++|...+
T Consensus 435 ~l~stqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGD 454 (553)
T ss_pred hhccCcccccccccCCCccc
Confidence 33445677788888876653
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.30 E-value=0.067 Score=46.41 Aligned_cols=82 Identities=26% Similarity=0.252 Sum_probs=52.0
Q ss_pred CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccC-Cccc-CCCCCCCEEeCcCCC-CCCcccccccCCCCccE
Q 038739 34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGEL-PISM-GNLGSLKVLDLSQNG-YFGELPTSIRNLFSLEK 110 (477)
Q Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~ 110 (477)
..++.+|-+++.|..+.-+.+.+++.++.|.+.+|.-.+.. -+.+ .-.++|+.|++++|. |++.--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 35677888888777665566777777888887777432110 0111 134788888888774 44433355667778887
Q ss_pred EEccC
Q 038739 111 LDLSF 115 (477)
Q Consensus 111 L~Ls~ 115 (477)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77764
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.74 E-value=0.21 Score=43.43 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=20.1
Q ss_pred CCCEEEccCCccccccchhhhcCCCCCEEeCcCCc
Q 038739 179 SLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS 213 (477)
Q Consensus 179 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 213 (477)
.++.++-+++.|....-+.+..++.++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 35566666666655545555555666666655554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.71 E-value=0.61 Score=46.75 Aligned_cols=82 Identities=23% Similarity=0.242 Sum_probs=52.3
Q ss_pred cCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCC--CCccccccCCccCcCcccEEEccCCCC-CCcc---hh--
Q 038739 200 NLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLN--RLSVLTKATSDTTSQKLKYIGLRSCNL-TKFP---NF-- 271 (477)
Q Consensus 200 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n--~i~~~~~~~~~~~~~~L~~L~L~~n~l-~~~p---~~-- 271 (477)
+.+.+..+.|++|++.............|+|++|+|++| .+....+.... ....|++|.+.+|.+ +.+- ..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccccchhhhHHHHH
Confidence 456777888888888766665555667888899999988 33222222222 344688889999988 3332 11
Q ss_pred --hhcCCCcCEEe
Q 038739 272 --LQNQHHLRFMD 282 (477)
Q Consensus 272 --l~~~~~L~~L~ 282 (477)
-..+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 22467776665
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.63 E-value=0.88 Score=25.28 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=12.6
Q ss_pred CCCCeEeCCCCcCcccCCc
Q 038739 360 NILESLVLSHNNLSGLLPQ 378 (477)
Q Consensus 360 ~~L~~LdLs~N~l~~~~p~ 378 (477)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35778888888887 4553
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.74 E-value=1.2 Score=24.81 Aligned_cols=15 Identities=47% Similarity=0.567 Sum_probs=11.6
Q ss_pred cCCCCeEeCCCCcCc
Q 038739 359 LNILESLVLSHNNLS 373 (477)
Q Consensus 359 l~~L~~LdLs~N~l~ 373 (477)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356888888888886
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.32 E-value=1.7 Score=24.63 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=11.5
Q ss_pred CCCCeEeCCCCcCcc
Q 038739 360 NILESLVLSHNNLSG 374 (477)
Q Consensus 360 ~~L~~LdLs~N~l~~ 374 (477)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 468888888888863
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.42 E-value=10 Score=38.47 Aligned_cols=67 Identities=24% Similarity=0.195 Sum_probs=47.4
Q ss_pred hcCCCCCCEEeCCCCCCccccccCCcc-CcCcccEEEccCC--CCCCcchhhh--cCCCcCEEeccCCccccc
Q 038739 224 LTSWKNLEFLGLSLNRLSVLTKATSDT-TSQKLKYIGLRSC--NLTKFPNFLQ--NQHHLRFMDLSDNRIQGK 291 (477)
Q Consensus 224 ~~~~~~L~~L~ls~n~i~~~~~~~~~~-~~~~L~~L~L~~n--~l~~~p~~l~--~~~~L~~L~Ls~n~i~~~ 291 (477)
-.+.+.+..+++++|++..+....... ..|+|+.|+|++| .+..-+ ++. +...|++|-+.+|.+...
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccc
Confidence 456788889999999887777665544 6788999999998 443222 121 234588899999988754
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.49 E-value=16 Score=19.97 Aligned_cols=11 Identities=55% Similarity=0.649 Sum_probs=6.1
Q ss_pred CCCCEEEcccc
Q 038739 34 HSLEELDLSAN 44 (477)
Q Consensus 34 ~~L~~L~Ls~n 44 (477)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.05 E-value=20 Score=43.78 Aligned_cols=32 Identities=28% Similarity=0.187 Sum_probs=26.7
Q ss_pred ecCCCcCccCCChhhhccCCCCeEeCCCCcCc
Q 038739 342 LASNNSLTGEIPSWICNLNILESLVLSHNNLS 373 (477)
Q Consensus 342 ~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~ 373 (477)
||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888766777888888999999998886
No 94
>PF15179 Myc_target_1: Myc target protein 1
Probab=36.72 E-value=7.6 Score=32.99 Aligned_cols=32 Identities=22% Similarity=0.577 Sum_probs=20.5
Q ss_pred CcEEEEEeeechhhhhhhhhhhhhcCchhhHHH
Q 038739 428 DWKIILTGYVGGLVAGLVLGFNFSTGIIRWILE 460 (477)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (477)
+|.-+.+.+.+.+++|+++|.++|.- ..|..|
T Consensus 17 ~~~~lIlaF~vSm~iGLviG~li~~L-ltwlSR 48 (197)
T PF15179_consen 17 DWEDLILAFCVSMAIGLVIGALIWAL-LTWLSR 48 (197)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 56667777777788888887654332 245443
No 95
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.34 E-value=22 Score=27.49 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=19.4
Q ss_pred eeechhhhhhhhhhh--hhcCchhhHH
Q 038739 435 GYVGGLVAGLVLGFN--FSTGIIRWIL 459 (477)
Q Consensus 435 ~~~~~~~~~~~~~~~--~~~~~~~~~~ 459 (477)
-++.|+++|+++|+. -+.+.-+|++
T Consensus 51 efIsGilVGa~iG~llD~~agTsPwgl 77 (116)
T COG5336 51 EFISGILVGAGIGWLLDKFAGTSPWGL 77 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 456788899999985 4677789966
No 96
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.30 E-value=19 Score=28.78 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=10.8
Q ss_pred echhhhhhhhhhhhh
Q 038739 437 VGGLVAGLVLGFNFS 451 (477)
Q Consensus 437 ~~~~~~~~~~~~~~~ 451 (477)
+.|+|+|+++|+++.
T Consensus 12 ~igLvvGi~IG~li~ 26 (138)
T COG3105 12 LIGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHHHHHHHHH
Confidence 357788888888654
No 97
>PF15050 SCIMP: SCIMP protein
Probab=33.17 E-value=22 Score=27.90 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=17.2
Q ss_pred hhhhhhhhhhhcCchhhHHHHhccccchhhhhh
Q 038739 441 VAGLVLGFNFSTGIIRWILEKLGMQQKATRRRR 473 (477)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (477)
++++++|.+++.. -+|.+|- |++|+.+|..+
T Consensus 18 ~vS~~lglIlyCv-cR~~lRq-Gkkweiakp~k 48 (133)
T PF15050_consen 18 LVSVVLGLILYCV-CRWQLRQ-GKKWEIAKPLK 48 (133)
T ss_pred HHHHHHHHHHHHH-HHHHHHc-cccceeccchh
Confidence 3455555544332 2777775 66777666433
No 98
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=31.66 E-value=24 Score=27.40 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=10.7
Q ss_pred EEeeec-hhhhhhhhhhhhhcCchhh
Q 038739 433 LTGYVG-GLVAGLVLGFNFSTGIIRW 457 (477)
Q Consensus 433 ~~~~~~-~~~~~~~~~~~~~~~~~~~ 457 (477)
++||+. |+|+|-.+......+.+-|
T Consensus 86 vvG~l~LGvV~GG~i~vLcylylPC~ 111 (127)
T PF06040_consen 86 VVGYLILGVVAGGLIAVLCYLYLPCW 111 (127)
T ss_pred eeehhhHHHHhccHHHHHHHHhccHH
Confidence 345542 5554444333333344444
No 99
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=31.26 E-value=44 Score=33.43 Aligned_cols=36 Identities=33% Similarity=0.357 Sum_probs=20.8
Q ss_pred CCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCccc
Q 038739 276 HHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLT 315 (477)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 315 (477)
+.++++|++.|.+.+..|..+..+.++ +.++.++++
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~ls 200 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELS 200 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc----cchhhhhhh
Confidence 456677777777776666655433333 444555444
No 100
>PRK10692 hypothetical protein; Provisional
Probab=31.01 E-value=30 Score=25.51 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=9.9
Q ss_pred chhhHHHHhccccch
Q 038739 454 IIRWILEKLGMQQKA 468 (477)
Q Consensus 454 ~~~~~~~~~~~~~~~ 468 (477)
.+-||+|.+..+.+|
T Consensus 71 DRYwwvkh~d~rcrr 85 (92)
T PRK10692 71 DRYWWVRHYDKRCRR 85 (92)
T ss_pred hhHHHHhhccHhhcc
Confidence 356899887654444
No 101
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.93 E-value=21 Score=29.03 Aligned_cols=13 Identities=54% Similarity=0.966 Sum_probs=7.4
Q ss_pred chhhhhhhhhhhh
Q 038739 438 GGLVAGLVLGFNF 450 (477)
Q Consensus 438 ~~~~~~~~~~~~~ 450 (477)
+|+|+|+++|+++
T Consensus 4 i~lvvG~iiG~~~ 16 (128)
T PF06295_consen 4 IGLVVGLIIGFLI 16 (128)
T ss_pred HHHHHHHHHHHHH
Confidence 3556666666643
No 102
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=30.92 E-value=27 Score=34.15 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=15.3
Q ss_pred EEeeechhhhhhhhhhhhhcCchhhHHHHhccccchh
Q 038739 433 LTGYVGGLVAGLVLGFNFSTGIIRWILEKLGMQQKAT 469 (477)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (477)
+.|+++|+++++|++++ -.-|..++..+++.+=
T Consensus 67 aagFfvaflvslVL~~l----~~f~l~r~~~l~~~~l 99 (429)
T PF12297_consen 67 AAGFFVAFLVSLVLTWL----CFFLLARTRCLQGRPL 99 (429)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHccccccch
Confidence 33444444444444443 3344555555554443
No 103
>PRK11677 hypothetical protein; Provisional
Probab=30.48 E-value=5 Score=32.74 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=8.5
Q ss_pred chhhhhhhhhhhhhc
Q 038739 438 GGLVAGLVLGFNFST 452 (477)
Q Consensus 438 ~~~~~~~~~~~~~~~ 452 (477)
+|+|+|+++|+++.+
T Consensus 8 i~livG~iiG~~~~R 22 (134)
T PRK11677 8 IGLVVGIIIGAVAMR 22 (134)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455666666665443
No 104
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=29.84 E-value=17 Score=30.38 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=0.0
Q ss_pred EEEeeechhhhhhhhhhhhhcCchhhHHHHh
Q 038739 432 ILTGYVGGLVAGLVLGFNFSTGIIRWILEKL 462 (477)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (477)
+..+-.+|+++|+++|..|.-+.+.-++|++
T Consensus 126 L~T~tLVGIIVGVLlaIG~igGIIivvvRKm 156 (162)
T PF05808_consen 126 LSTVTLVGIIVGVLLAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp -------------------------------
T ss_pred cceeeeeeehhhHHHHHHHHhheeeEEeehh
Confidence 3444456677777777777777766666543
No 105
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=27.35 E-value=39 Score=24.75 Aligned_cols=14 Identities=7% Similarity=0.252 Sum_probs=9.1
Q ss_pred chhhHHHHhccccc
Q 038739 454 IIRWILEKLGMQQK 467 (477)
Q Consensus 454 ~~~~~~~~~~~~~~ 467 (477)
.+-||+|.+..+.+
T Consensus 71 DRYwWvkh~DkRcr 84 (89)
T PF10762_consen 71 DRYWWVKHFDKRCR 84 (89)
T ss_pred hhHHHHHhhhHhhc
Confidence 35689988764443
No 106
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=27.01 E-value=45 Score=24.15 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=12.0
Q ss_pred echhhhhhhhhhhhhcC
Q 038739 437 VGGLVAGLVLGFNFSTG 453 (477)
Q Consensus 437 ~~~~~~~~~~~~~~~~~ 453 (477)
+.|+++|.+.+++++..
T Consensus 34 ~~G~~~G~~~s~l~frr 50 (75)
T PF04418_consen 34 GLGFGIGVVFSLLFFRR 50 (75)
T ss_pred hhhhhHHHHHHHHHHcc
Confidence 45677788888877755
No 107
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.58 E-value=47 Score=40.81 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=18.8
Q ss_pred EecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCc
Q 038739 308 NFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLT 349 (477)
Q Consensus 308 ~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~ 349 (477)
||++|+|+.+....| ..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F----------~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGIC----------ANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHh----------ccCCCceEEEeeCCccc
Confidence 466677665543322 23556777777777654
No 108
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=24.11 E-value=13 Score=28.48 Aligned_cols=7 Identities=43% Similarity=0.928 Sum_probs=2.8
Q ss_pred hhhhhhh
Q 038739 442 AGLVLGF 448 (477)
Q Consensus 442 ~~~~~~~ 448 (477)
+|.++|+
T Consensus 79 v~~lv~~ 85 (96)
T PTZ00382 79 VGGLVGF 85 (96)
T ss_pred HHHHHHH
Confidence 3334444
No 109
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=22.16 E-value=10 Score=29.14 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=11.5
Q ss_pred CCCCcEEEEEeeechhhhhhhh
Q 038739 425 GASDWKIILTGYVGGLVAGLVL 446 (477)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~ 446 (477)
+...|..+.++.++|+++|+.+
T Consensus 80 ~e~PWq~VGvaAaVGlllGlLl 101 (104)
T COG4575 80 RENPWQGVGVAAAVGLLLGLLL 101 (104)
T ss_pred HcCCchHHHHHHHHHHHHHHHH
Confidence 3456876555544444444443
No 110
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.20 E-value=22 Score=30.19 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=16.3
Q ss_pred CcEEEEEeeech-hhhhhhhhhhhhcCchhhHHHH
Q 038739 428 DWKIILTGYVGG-LVAGLVLGFNFSTGIIRWILEK 461 (477)
Q Consensus 428 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 461 (477)
-|..+..+..+| ++.|++ |+..+.+..+|.+..
T Consensus 134 lw~P~l~pm~vgav~~~a~-~~ll~y~~~r~~v~~ 167 (184)
T COG3216 134 LWGPVLKPMLVGAVPAGAI-GGLLFYGLTRYSVTR 167 (184)
T ss_pred hcchHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHH
Confidence 355566655444 334443 444455555555544
No 111
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.79 E-value=44 Score=26.80 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=5.9
Q ss_pred chhhhhhhhhhhh
Q 038739 438 GGLVAGLVLGFNF 450 (477)
Q Consensus 438 ~~~~~~~~~~~~~ 450 (477)
.|+++|++.|.+.
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3444444444433
Done!