Query 038739
Match_columns 477
No_of_seqs 675 out of 4126
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 03:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.8E-52 2E-56 444.7 28.7 392 5-405 218-700 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-51 4.5E-56 441.9 30.6 384 6-409 196-680 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.2E-45 4.1E-50 386.5 37.1 398 2-407 27-522 (606)
4 3t6q_A CD180 antigen; protein- 100.0 7.7E-45 2.6E-49 380.4 36.7 389 3-404 74-542 (606)
5 4eco_A Uncharacterized protein 100.0 3.7E-46 1.3E-50 391.1 24.6 357 2-399 198-601 (636)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-45 7.3E-50 384.6 30.1 390 2-404 26-539 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 6.3E-45 2.1E-49 381.0 31.7 390 3-403 49-563 (606)
8 4eco_A Uncharacterized protein 100.0 1.2E-45 4.1E-50 387.2 25.3 376 10-406 81-586 (636)
9 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-44 3.7E-49 374.8 29.9 391 2-402 20-514 (549)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-44 4.9E-49 391.2 31.7 390 3-405 41-546 (844)
11 4ecn_A Leucine-rich repeat pro 100.0 1.2E-44 4.1E-49 386.5 27.4 377 10-406 323-826 (876)
12 2z63_A TOLL-like receptor 4, v 100.0 2.9E-44 1E-48 373.2 29.0 389 2-407 22-516 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 5.2E-44 1.8E-48 371.3 28.8 378 12-409 9-494 (570)
14 1ziw_A TOLL-like receptor 3; i 100.0 7.5E-43 2.5E-47 370.2 36.1 396 4-403 43-553 (680)
15 3v47_A TOLL-like receptor 5B a 100.0 2.8E-43 9.6E-48 355.7 30.6 357 34-403 30-413 (455)
16 1ziw_A TOLL-like receptor 3; i 100.0 1E-42 3.6E-47 369.1 35.4 398 1-406 18-477 (680)
17 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-43 1.6E-47 379.4 31.8 395 2-405 19-524 (844)
18 4ecn_A Leucine-rich repeat pro 100.0 1.3E-43 4.3E-48 378.7 26.7 358 2-401 440-843 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 6.8E-43 2.3E-47 358.9 30.0 370 1-402 14-485 (520)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.1E-41 3.1E-45 346.1 32.0 369 2-402 46-514 (562)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.3E-40 7.7E-45 348.1 34.9 390 1-407 45-564 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 5.1E-41 1.8E-45 344.9 26.5 361 13-404 3-462 (520)
23 2z81_A CD282 antigen, TOLL-lik 100.0 8.4E-41 2.9E-45 345.6 25.5 369 3-377 43-514 (549)
24 1o6v_A Internalin A; bacterial 100.0 6.5E-39 2.2E-43 324.5 32.7 345 9-399 45-389 (466)
25 1jl5_A Outer protein YOPM; leu 100.0 1.2E-39 4E-44 327.6 26.3 349 9-405 10-379 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 4.2E-39 1.4E-43 325.1 29.1 352 36-404 12-390 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.5E-39 1.9E-43 332.7 28.5 367 9-404 30-491 (562)
28 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-37 6.6E-42 325.8 33.5 385 2-409 20-542 (635)
29 2id5_A Lingo-1, leucine rich r 100.0 1.5E-37 5.1E-42 315.6 30.5 320 13-375 14-335 (477)
30 1o6v_A Internalin A; bacterial 100.0 2.5E-37 8.5E-42 312.9 31.4 330 5-378 63-392 (466)
31 1jl5_A Outer protein YOPM; leu 100.0 7.5E-38 2.6E-42 314.4 26.9 361 1-408 25-421 (454)
32 3bz5_A Internalin-J, INLJ; leu 100.0 9.9E-38 3.4E-42 313.8 27.3 346 4-406 36-395 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 3.3E-37 1.1E-41 313.1 28.8 309 2-317 26-335 (477)
34 3o6n_A APL1; leucine-rich repe 100.0 7.8E-36 2.7E-40 295.0 28.5 312 33-401 44-355 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 2E-35 6.9E-40 297.0 30.6 321 5-382 59-396 (457)
36 4fmz_A Internalin; leucine ric 100.0 2E-35 7E-40 287.3 29.7 307 30-398 40-346 (347)
37 4fmz_A Internalin; leucine ric 100.0 4E-35 1.4E-39 285.3 30.8 307 6-373 40-346 (347)
38 3o6n_A APL1; leucine-rich repe 100.0 7.3E-36 2.5E-40 295.2 25.6 312 8-375 43-354 (390)
39 3oja_B Anopheles plasmodium-re 100.0 3.2E-35 1.1E-39 306.3 28.2 311 58-401 51-361 (597)
40 3oja_B Anopheles plasmodium-re 100.0 4.7E-35 1.6E-39 305.0 25.7 310 33-375 50-360 (597)
41 1xku_A Decorin; proteoglycan, 100.0 1.4E-32 4.9E-37 265.3 30.7 293 35-371 32-330 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 1E-32 3.5E-37 266.5 27.4 292 35-371 34-331 (332)
43 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-36 4.6E-41 307.3 -5.0 381 10-398 3-440 (461)
44 1ogq_A PGIP-2, polygalacturona 100.0 2.1E-33 7E-38 268.9 16.3 247 11-287 51-302 (313)
45 1xku_A Decorin; proteoglycan, 100.0 1.4E-31 4.8E-36 258.3 29.0 288 11-313 32-330 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 5.9E-36 2E-40 302.5 -2.9 360 34-400 3-413 (461)
47 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-31 4.1E-36 259.0 26.6 287 11-313 34-331 (332)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-32 3.8E-37 263.8 16.6 248 34-313 50-302 (313)
49 2z80_A TOLL-like receptor 2, v 100.0 2.4E-30 8E-35 252.2 21.1 280 8-317 29-316 (353)
50 2z80_A TOLL-like receptor 2, v 100.0 4.5E-30 1.5E-34 250.2 18.9 261 83-402 53-318 (353)
51 1ozn_A Reticulon 4 receptor; N 100.0 1.8E-29 6.1E-34 238.4 20.0 225 12-241 13-238 (285)
52 4fcg_A Uncharacterized protein 100.0 1.9E-29 6.4E-34 242.8 19.9 227 9-242 80-315 (328)
53 2z66_A Variable lymphocyte rec 100.0 1.6E-29 5.3E-34 241.3 19.1 279 12-296 9-294 (306)
54 2z66_A Variable lymphocyte rec 100.0 7.8E-30 2.7E-34 243.4 16.5 237 2-243 22-263 (306)
55 3zyi_A Leucine-rich repeat-con 100.0 1.1E-28 3.8E-33 248.5 23.8 248 11-266 55-303 (452)
56 1ozn_A Reticulon 4 receptor; N 100.0 6.8E-29 2.3E-33 234.4 20.8 217 2-220 26-243 (285)
57 3ogk_B Coronatine-insensitive 100.0 4.1E-32 1.4E-36 283.1 -1.8 377 8-400 110-528 (592)
58 3zyj_A Leucine-rich repeat-con 100.0 2E-28 6.8E-33 245.7 23.8 247 11-265 44-291 (440)
59 3g06_A SSPH2 (leucine-rich rep 100.0 1.9E-27 6.5E-32 246.1 30.0 268 35-384 41-308 (622)
60 4fcg_A Uncharacterized protein 100.0 9.9E-29 3.4E-33 237.8 18.7 212 1-216 95-315 (328)
61 3zyi_A Leucine-rich repeat-con 100.0 2.1E-27 7E-32 239.2 27.2 247 35-289 55-303 (452)
62 3g06_A SSPH2 (leucine-rich rep 100.0 3.3E-27 1.1E-31 244.3 28.1 262 59-403 41-302 (622)
63 3zyj_A Leucine-rich repeat-con 100.0 3.2E-27 1.1E-31 236.9 26.4 247 35-289 44-292 (440)
64 3o53_A Protein LRIM1, AGAP0063 100.0 6.5E-30 2.2E-34 245.1 6.5 270 60-405 12-283 (317)
65 3o53_A Protein LRIM1, AGAP0063 100.0 7.7E-30 2.6E-34 244.6 5.8 239 54-310 30-270 (317)
66 1wwl_A Monocyte differentiatio 100.0 8.2E-30 2.8E-34 243.8 5.3 251 55-316 40-310 (312)
67 1wwl_A Monocyte differentiatio 100.0 9.8E-30 3.4E-34 243.3 5.8 252 29-291 38-311 (312)
68 3ogk_B Coronatine-insensitive 99.9 2.2E-29 7.5E-34 262.4 2.3 371 11-395 139-548 (592)
69 2z62_A TOLL-like receptor 4, v 99.9 1.4E-26 4.9E-31 217.4 19.7 203 35-240 29-236 (276)
70 3oja_A Leucine-rich immune mol 99.9 1.7E-27 5.7E-32 241.4 10.0 234 59-310 35-270 (487)
71 2o6q_A Variable lymphocyte rec 99.9 5.1E-25 1.7E-29 206.1 24.2 202 11-215 17-218 (270)
72 2z62_A TOLL-like receptor 4, v 99.9 1.3E-25 4.5E-30 210.8 20.0 213 2-217 22-239 (276)
73 3oja_A Leucine-rich immune mol 99.9 2.3E-26 7.8E-31 233.1 15.8 233 35-284 35-270 (487)
74 2p1m_B Transport inhibitor res 99.9 6.6E-28 2.3E-32 251.3 0.6 378 7-399 63-520 (594)
75 1p9a_G Platelet glycoprotein I 99.9 1.5E-24 5E-29 204.8 22.5 204 6-216 6-209 (290)
76 2o6q_A Variable lymphocyte rec 99.9 3.2E-24 1.1E-28 200.6 22.7 190 2-193 31-220 (270)
77 3rfs_A Internalin B, repeat mo 99.9 5.5E-25 1.9E-29 206.0 16.8 201 8-219 39-239 (272)
78 2p1m_B Transport inhibitor res 99.9 5.7E-28 2E-32 251.8 -4.2 378 13-401 46-497 (594)
79 2xwt_C Thyrotropin receptor; s 99.9 2.2E-24 7.4E-29 198.0 15.9 205 22-238 23-236 (239)
80 3rfs_A Internalin B, repeat mo 99.9 5.1E-24 1.7E-28 199.4 17.0 191 4-203 57-247 (272)
81 1p9a_G Platelet glycoprotein I 99.9 3E-23 1E-27 195.9 22.3 203 29-240 5-207 (290)
82 3goz_A Leucine-rich repeat-con 99.9 2.9E-25 9.8E-30 216.8 6.5 264 62-378 2-302 (362)
83 3goz_A Leucine-rich repeat-con 99.9 2E-25 6.7E-30 218.0 4.5 178 14-191 2-209 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 8.4E-24 2.9E-28 194.0 15.0 196 59-263 32-236 (239)
85 2ca6_A RAN GTPase-activating p 99.9 1.1E-25 3.7E-30 221.9 2.5 245 25-269 23-319 (386)
86 2ca6_A RAN GTPase-activating p 99.9 1.3E-25 4.5E-30 221.3 1.9 239 50-290 24-317 (386)
87 3m19_A Variable lymphocyte rec 99.9 8.5E-23 2.9E-27 188.8 20.7 180 11-193 15-194 (251)
88 4glp_A Monocyte differentiatio 99.9 4.5E-24 1.5E-28 203.8 11.8 225 34-266 64-307 (310)
89 1h6u_A Internalin H; cell adhe 99.9 2.7E-23 9.2E-28 198.0 16.8 196 30-243 37-232 (308)
90 4glp_A Monocyte differentiatio 99.9 9.6E-24 3.3E-28 201.5 13.5 226 10-242 64-308 (310)
91 2ast_B S-phase kinase-associat 99.9 6.9E-25 2.4E-29 211.9 4.2 251 36-297 49-314 (336)
92 3m19_A Variable lymphocyte rec 99.9 3.2E-22 1.1E-26 184.9 20.4 181 34-217 14-194 (251)
93 2ast_B S-phase kinase-associat 99.9 9.3E-24 3.2E-28 204.0 9.8 258 83-407 48-315 (336)
94 1h6u_A Internalin H; cell adhe 99.9 1.4E-22 4.7E-27 193.1 17.4 191 9-215 40-230 (308)
95 4ay9_X Follicle-stimulating ho 99.9 1.3E-21 4.5E-26 189.9 18.7 241 13-287 12-257 (350)
96 2o6s_A Variable lymphocyte rec 99.9 2.5E-21 8.6E-26 173.5 17.1 181 13-203 10-190 (208)
97 2o6s_A Variable lymphocyte rec 99.9 2E-21 6.9E-26 174.1 15.5 169 2-179 22-190 (208)
98 4ay9_X Follicle-stimulating ho 99.9 1.8E-21 6.1E-26 189.0 14.5 229 1-238 23-256 (350)
99 3cvr_A Invasion plasmid antige 99.8 3.4E-20 1.2E-24 189.5 18.2 45 339-384 210-254 (571)
100 3cvr_A Invasion plasmid antige 99.8 7.9E-20 2.7E-24 186.9 20.8 183 11-221 60-249 (571)
101 2v9t_B SLIT homolog 2 protein 99.8 9E-20 3.1E-24 164.7 17.1 152 13-167 14-165 (220)
102 1h6t_A Internalin B; cell adhe 99.8 2.8E-20 9.5E-25 175.6 14.3 173 30-216 42-214 (291)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-19 4.6E-24 163.6 16.7 152 13-167 14-166 (220)
104 1h6t_A Internalin B; cell adhe 99.8 7.9E-20 2.7E-24 172.5 15.3 186 39-242 29-214 (291)
105 2xot_A Amphoterin-induced prot 99.8 8.1E-20 2.8E-24 178.0 14.4 177 37-216 21-203 (361)
106 3e6j_A Variable lymphocyte rec 99.8 5.3E-19 1.8E-23 160.8 17.9 151 13-167 22-172 (229)
107 1m9s_A Internalin B; cell inva 99.8 1.1E-19 3.9E-24 187.7 14.5 171 8-192 41-211 (605)
108 2v9t_B SLIT homolog 2 protein 99.8 5.7E-19 1.9E-23 159.5 17.2 152 37-191 14-165 (220)
109 2xot_A Amphoterin-induced prot 99.8 2.8E-19 9.5E-24 174.2 15.5 176 13-191 21-202 (361)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 6.2E-19 2.1E-23 159.2 16.5 153 37-192 14-167 (220)
111 4ezg_A Putative uncharacterize 99.8 2.3E-19 7.9E-24 159.2 13.0 154 31-191 41-194 (197)
112 1m9s_A Internalin B; cell inva 99.8 3.3E-19 1.1E-23 184.2 14.8 190 12-217 23-212 (605)
113 3e6j_A Variable lymphocyte rec 99.8 3E-18 1E-22 155.8 18.3 153 36-192 21-173 (229)
114 4ezg_A Putative uncharacterize 99.8 4.1E-19 1.4E-23 157.6 11.5 153 55-215 41-194 (197)
115 1xeu_A Internalin C; cellular 99.8 5.7E-19 1.9E-23 164.0 8.5 168 9-191 18-185 (263)
116 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.9E-23 162.0 8.7 170 32-216 17-186 (263)
117 1dce_A Protein (RAB geranylger 99.8 1.2E-20 4.2E-25 193.7 -5.1 198 31-235 346-567 (567)
118 3sb4_A Hypothetical leucine ri 99.7 3E-18 1E-22 164.7 9.4 220 81-308 100-327 (329)
119 1w8a_A SLIT protein; signaling 99.7 4E-17 1.4E-21 144.0 14.0 129 13-144 11-140 (192)
120 1dce_A Protein (RAB geranylger 99.7 4.2E-20 1.4E-24 189.8 -7.0 196 55-259 346-566 (567)
121 2ell_A Acidic leucine-rich nuc 99.7 2.1E-17 7.3E-22 142.5 10.9 131 10-142 24-159 (168)
122 3sb4_A Hypothetical leucine ri 99.7 1.5E-17 5.1E-22 159.8 10.2 242 9-260 48-328 (329)
123 4b8c_D Glucose-repressible alc 99.7 1.6E-18 5.6E-23 183.4 2.9 191 10-212 173-369 (727)
124 4b8c_D Glucose-repressible alc 99.7 2.6E-18 8.8E-23 181.9 3.8 194 12-215 193-404 (727)
125 2je0_A Acidic leucine-rich nuc 99.7 1.7E-17 5.9E-22 140.0 7.9 126 10-137 17-147 (149)
126 1w8a_A SLIT protein; signaling 99.7 1.8E-16 6.1E-21 139.8 14.1 128 37-167 11-139 (192)
127 2ell_A Acidic leucine-rich nuc 99.7 5.5E-17 1.9E-21 139.9 10.3 133 33-167 23-160 (168)
128 4fdw_A Leucine rich hypothetic 99.7 2E-15 6.9E-20 148.3 22.0 265 9-289 112-383 (401)
129 2je0_A Acidic leucine-rich nuc 99.7 4.8E-17 1.6E-21 137.3 7.9 128 33-162 16-148 (149)
130 4fdw_A Leucine rich hypothetic 99.7 5.7E-15 1.9E-19 145.1 23.5 268 30-315 109-383 (401)
131 2wfh_A SLIT homolog 2 protein 99.7 6.3E-16 2.1E-20 136.3 14.4 126 13-142 13-138 (193)
132 2o6r_A Variable lymphocyte rec 99.7 9E-16 3.1E-20 133.4 14.9 130 12-144 9-138 (177)
133 2wfh_A SLIT homolog 2 protein 99.6 1.6E-15 5.3E-20 133.8 14.3 126 37-166 13-138 (193)
134 2o6r_A Variable lymphocyte rec 99.6 3.7E-15 1.3E-19 129.5 14.8 129 36-167 9-137 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.6 6.2E-16 2.1E-20 134.3 9.1 131 6-142 15-152 (176)
136 4fs7_A Uncharacterized protein 99.6 3.5E-14 1.2E-18 139.8 22.1 153 28-187 65-217 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.6 1.6E-15 5.6E-20 131.7 7.9 108 30-142 15-125 (176)
138 1ds9_A Outer arm dynein; leuci 99.6 6.1E-18 2.1E-22 150.1 -11.1 134 8-146 16-156 (198)
139 4fs7_A Uncharacterized protein 99.5 4E-13 1.4E-17 132.2 21.3 317 46-394 59-375 (394)
140 3g39_A Variable lymphocyte rec 99.5 7.8E-14 2.7E-18 120.2 12.4 105 12-119 11-115 (170)
141 2r9u_A Variable lymphocyte rec 99.5 1.5E-13 5.2E-18 118.8 12.5 104 13-119 15-118 (174)
142 1ds9_A Outer arm dynein; leuci 99.5 6.7E-17 2.3E-21 143.3 -9.0 127 77-208 43-180 (198)
143 3g39_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 116.0 12.7 105 36-143 11-115 (170)
144 4gt6_A Cell surface protein; l 99.5 1.4E-11 5E-16 121.0 24.7 294 4-313 57-368 (394)
145 2r9u_A Variable lymphocyte rec 99.4 6.8E-13 2.3E-17 114.6 12.6 103 37-142 15-117 (174)
146 4gt6_A Cell surface protein; l 99.4 5.1E-11 1.7E-15 117.1 23.7 317 27-397 56-390 (394)
147 3un9_A NLR family member X1; l 99.4 1.8E-14 6.2E-19 140.2 -3.3 167 34-200 72-261 (372)
148 3un9_A NLR family member X1; l 99.3 4.5E-14 1.5E-18 137.3 -1.7 110 58-167 72-196 (372)
149 2ifg_A High affinity nerve gro 99.3 8.3E-12 2.8E-16 120.6 11.3 104 13-119 11-116 (347)
150 2ifg_A High affinity nerve gro 99.2 2.1E-11 7.1E-16 117.8 10.4 94 1-96 23-117 (347)
151 4h09_A Hypothetical leucine ri 99.2 6.2E-09 2.1E-13 101.6 24.4 286 8-311 44-342 (379)
152 4h09_A Hypothetical leucine ri 99.1 1.3E-08 4.5E-13 99.2 24.5 278 4-297 63-353 (379)
153 2ra8_A Uncharacterized protein 99.1 8E-11 2.7E-15 113.5 5.7 102 10-114 107-227 (362)
154 2ra8_A Uncharacterized protein 99.0 5.5E-11 1.9E-15 114.7 -0.3 187 5-213 134-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 1.6E-09 5.6E-14 94.2 0.3 116 28-143 30-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 7.2E-08 2.4E-12 83.8 5.1 19 271-289 146-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 1E-08 3.6E-13 93.7 -2.6 82 55-137 167-258 (267)
158 3rw6_A Nuclear RNA export fact 98.4 1.6E-07 5.4E-12 85.9 3.9 103 9-113 140-258 (267)
159 3e4g_A ATP synthase subunit S, 98.4 1.4E-07 4.7E-12 80.1 2.8 84 34-117 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 3.2E-07 1.1E-11 77.8 2.1 84 58-141 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00012 4.1E-09 63.2 5.4 18 270-287 151-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 4.2E-05 1.4E-09 66.1 2.0 113 30-142 37-169 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.00087 3E-08 53.9 5.6 36 337-372 32-67 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0034 1.2E-07 50.4 5.9 56 256-315 11-68 (130)
165 2lz0_A Uncharacterized protein 73.6 4.3 0.00015 30.2 4.5 45 22-67 8-52 (100)
166 2lz0_A Uncharacterized protein 60.6 17 0.00058 26.9 5.5 45 46-91 8-52 (100)
167 2klu_A T-cell surface glycopro 32.6 12 0.00041 25.0 0.5 14 441-454 13-26 (70)
168 2k1k_A Ephrin type-A receptor 24.4 14 0.00049 21.9 -0.2 13 437-449 13-25 (38)
169 2knc_B Integrin beta-3; transm 23.2 17 0.00058 25.6 -0.0 8 438-445 15-22 (79)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-52 Score=444.66 Aligned_cols=392 Identities=33% Similarity=0.448 Sum_probs=266.0
Q ss_pred cCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC-CC
Q 038739 5 SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL-GS 83 (477)
Q Consensus 5 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~ 83 (477)
.++++++|++|++++|.+++.+|..+.++++|++|++++|.+++..|.. .+++|++|++++|.+++.+|..+... ++
T Consensus 218 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~ 295 (768)
T 3rgz_A 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT 295 (768)
T ss_dssp BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence 3889999999999999999888989999999999999998887766543 66777777777777766666666553 67
Q ss_pred CCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCcc-ccCCCCCCEEEccCCCCcccCCccccC----------
Q 038739 84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWS-TGNFSSLKLLDLRSCGFWGKVPHSIGN---------- 152 (477)
Q Consensus 84 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~l~~---------- 152 (477)
|++|++++|++++.+|..++++++|++|++++|.+++.+|.. +..+++|++|++++|.+.+.+|..+..
T Consensus 296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 777777777766666666666666666666666666555544 566666666666666665555554443
Q ss_pred -----------------CCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCc
Q 038739 153 -----------------FTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR 215 (477)
Q Consensus 153 -----------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 215 (477)
+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 445566666666665566666666777777777777777677777777777777777777777
Q ss_pred cccchhhhhcCCCCCCEEeCCCCCCccccccCCc-cCcCcccEEEccCCCCC-CcchhhhcCCCcCEEeccCCcccccCC
Q 038739 216 GMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD-TTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVP 293 (477)
Q Consensus 216 ~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~i~~~~p 293 (477)
+..+.. +..+++|++|++++|++... .+.. ..+++|++|++++|+++ .+|.++..+++|++|++++|++++.+|
T Consensus 456 ~~~p~~--~~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 456 GEIPQE--LMYVKTLETLILDFNDLTGE--IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp SCCCGG--GGGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred CcCCHH--HcCCCCceEEEecCCcccCc--CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 666655 66777777777777755432 2222 25677888888888885 677888888888888888888888888
Q ss_pred ccCCcccCCCCCeEEecCCcccccCCCCcc--------------------------------------------------
Q 038739 294 KWLLDPNMQNLNGFNFSHNLLTGFDQHPVV-------------------------------------------------- 323 (477)
Q Consensus 294 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------------------------------- 323 (477)
..+. .+++|+.|++++|+++|.+|..+.
T Consensus 532 ~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 532 AELG--DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp GGGG--GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred HHHc--CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 8777 788888888888888876554320
Q ss_pred -----cCCC--CCCCCCC---CCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecC
Q 038739 324 -----LPGN--KGPLPVP---PPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQ 393 (477)
Q Consensus 324 -----l~~n--~~~~~~~---~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls 393 (477)
+..+ .|.+|.. ++.++.|++++|+++|.+|..++++++|+.|||++|+++|.+|..++.++ +|++|||+
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~LdLs 688 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLS 688 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECC
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC-CCCEEECC
Confidence 0001 1111111 23455666666666666666666666666666666666666666666665 56666666
Q ss_pred CCcCCcccCCCC
Q 038739 394 GNNLPLSKGCES 405 (477)
Q Consensus 394 ~N~l~~~~p~~~ 405 (477)
+|+++|.+|...
T Consensus 689 ~N~l~g~ip~~l 700 (768)
T 3rgz_A 689 SNKLDGRIPQAM 700 (768)
T ss_dssp SSCCEECCCGGG
T ss_pred CCcccCcCChHH
Confidence 666666666544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-51 Score=441.93 Aligned_cols=384 Identities=33% Similarity=0.458 Sum_probs=290.1
Q ss_pred CCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCC
Q 038739 6 LGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLK 85 (477)
Q Consensus 6 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 85 (477)
+.++++|++|++++|.+++.+|. +.++++|++|++++|++++..|..+..+++|++|++++|.+++..|.. .+++|+
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence 47899999999999999988886 999999999999999999999999999999999999999999877765 899999
Q ss_pred EEeCcCCCCCCcccccccCC-CCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCcc-ccCCCCCcEEECCC
Q 038739 86 VLDLSQNGYFGELPTSIRNL-FSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHS-IGNFTQLQYLHLGS 163 (477)
Q Consensus 86 ~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~ 163 (477)
+|++++|++++.+|..+... ++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|.. +..+++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 99999999998999888775 99999999999999999999999999999999999998888875 99999999999999
Q ss_pred CcCCCcCCcCCCCCC-CCCEEEccCCcccc--------------------------ccchhhhcCCCCCEEeCcCCcCcc
Q 038739 164 NNFSGDLLGPIGNLR-SLEAINVAKCNFSG--------------------------QITSSLRNLSQLTALDLAQNSYRG 216 (477)
Q Consensus 164 n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~--------------------------~~~~~l~~l~~L~~L~L~~n~l~~ 216 (477)
|.+++.+|..+..++ +|++|++++|.+++ .+|..+..+++|++|++++|.+.+
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 999877777666554 55555555555554 444445555555555555555554
Q ss_pred ccchhhhhcCCCCCCEEeCCCCCCccccccCCc-cCcCcccEEEccCCCCC-CcchhhhcCCCcCEEeccCCcccccCCc
Q 038739 217 MIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD-TTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNRIQGKVPK 294 (477)
Q Consensus 217 ~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~i~~~~p~ 294 (477)
..+.. +..+++|+.|++++|.+.. ..+.. ..+++|++|++++|.++ .+|..+..+++|++|++++|++++.+|.
T Consensus 433 ~~p~~--l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 433 TIPSS--LGSLSKLRDLKLWLNMLEG--EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cccHH--HhcCCCCCEEECCCCcccC--cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 44433 4455555555555553331 11111 13455666666666653 4455556666666666666666666665
Q ss_pred cCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChh-------------------
Q 038739 295 WLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSW------------------- 355 (477)
Q Consensus 295 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~------------------- 355 (477)
++. .+++|+.|++++|++++.++..+ ..+++|+.|++++|.++|.+|..
T Consensus 509 ~~~--~l~~L~~L~L~~N~l~~~~p~~l----------~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 509 WIG--RLENLAILKLSNNSFSGNIPAEL----------GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp GGG--GCTTCCEEECCSSCCEEECCGGG----------GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred HHh--cCCCCCEEECCCCcccCcCCHHH----------cCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 555 55666666666666655544332 12455666666666666655544
Q ss_pred ---------------------------------------------------hhccCCCCeEeCCCCcCcccCCchhhhcc
Q 038739 356 ---------------------------------------------------ICNLNILESLVLSHNNLSGLLPQCLGNFS 384 (477)
Q Consensus 356 ---------------------------------------------------~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 384 (477)
++.+++|+.|||++|+++|.+|..++.++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 44567899999999999999999999999
Q ss_pred cccceeecCCCcCCcccCCCCCCCC
Q 038739 385 DELLVLDLQGNNLPLSKGCESGEAP 409 (477)
Q Consensus 385 ~~L~~L~Ls~N~l~~~~p~~~~~~~ 409 (477)
.|++|+|++|+++|.+|...+..+
T Consensus 657 -~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 657 -YLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp -TCCEEECCSSCCCSCCCGGGGGCT
T ss_pred -cCCEEeCcCCccCCCCChHHhCCC
Confidence 999999999999999998776543
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-45 Score=386.45 Aligned_cols=398 Identities=20% Similarity=0.168 Sum_probs=233.3
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL 81 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 81 (477)
||..+.. .+++|++++|.+++..|..|.++++|++|++++|++++..|.+|.++++|++|++++|++++..|..|+++
T Consensus 27 iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 27 IPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp CCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 4444432 56666666666665556666666666666666666665556666666666666666666665556666666
Q ss_pred CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCc--EE
Q 038739 82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQ--YL 159 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~--~L 159 (477)
++|++|++++|++++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|+ .|
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 6666666666666554455566666666666666666543222333356666666666655554444455555544 44
Q ss_pred ECCCCcCC------------------------------------------------------------------------
Q 038739 160 HLGSNNFS------------------------------------------------------------------------ 167 (477)
Q Consensus 160 ~l~~n~l~------------------------------------------------------------------------ 167 (477)
++++|.++
T Consensus 185 ~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred ecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 44444443
Q ss_pred ---CcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccc
Q 038739 168 ---GDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLT 244 (477)
Q Consensus 168 ---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 244 (477)
+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+....
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS--ASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC--GGGCTTCSEEECCSCSSCCBC
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh--hhccCcCCEEECCCCCccccc
Confidence 333333555566666666666665 45555666666666666666666554433 556666666666666443111
Q ss_pred ccCCccCcCcccEEEccCCCCCCc---chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCC
Q 038739 245 KATSDTTSQKLKYIGLRSCNLTKF---PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHP 321 (477)
Q Consensus 245 ~~~~~~~~~~L~~L~L~~n~l~~~---p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 321 (477)
.......+++|++|++++|.++.+ +..+..+++|++|++++|++.+..|..+. .+++|+.|++++|++++..+..
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK--ECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT--TCTTCSEEECTTCCEECCTTCC
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc--CCccCCeEECCCCcCCCcccch
Confidence 111122456677777777766544 44566667777777777777666666665 6667777777777766554322
Q ss_pred -c---------ccCCC--CCCCC---CCCCccceeecCCCcCccC---CChhhhccCCCCeEeCCCCcCcccCCchhhhc
Q 038739 322 -V---------VLPGN--KGPLP---VPPPGTITYLASNNSLTGE---IPSWICNLNILESLVLSHNNLSGLLPQCLGNF 383 (477)
Q Consensus 322 -~---------~l~~n--~~~~~---~~~~~l~~L~ls~n~l~~~---~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l 383 (477)
+ ++++| .+..| ..+++|+.|++++|.+++. .+..+..+++|++|++++|++++..|..|..+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 1 33333 11122 2245667777777776652 23456667777777777777776666666666
Q ss_pred ccccceeecCCCcCCcccCCCCCC
Q 038739 384 SDELLVLDLQGNNLPLSKGCESGE 407 (477)
Q Consensus 384 ~~~L~~L~Ls~N~l~~~~p~~~~~ 407 (477)
+ +|++|++++|++++..|.....
T Consensus 500 ~-~L~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 500 K-MMNHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp T-TCCEEECCSSCCCGGGGGGGTT
T ss_pred c-CCCEEECCCCccCcCChhHhCc
Confidence 6 6777777777776666654443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.7e-45 Score=380.36 Aligned_cols=389 Identities=20% Similarity=0.177 Sum_probs=312.9
Q ss_pred CccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739 3 PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG 82 (477)
Q Consensus 3 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 82 (477)
|.+|+++++|++|++++|.+++..|..|.++++|++|++++|++++..+..+.++++|++|++++|++.+.....+..++
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 153 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT
T ss_pred hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCc
Confidence 67899999999999999999988888999999999999999999987778889999999999999998864434455588
Q ss_pred CCCEEeCcCCCCCCcccccccCCCCcc--EEEccCCcCc-----------------------------------------
Q 038739 83 SLKVLDLSQNGYFGELPTSIRNLFSLE--KLDLSFNNFS----------------------------------------- 119 (477)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~--~L~Ls~n~l~----------------------------------------- 119 (477)
+|++|++++|.+++..+..++.+++|+ +|++++|.++
T Consensus 154 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~ 233 (606)
T 3t6q_A 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233 (606)
T ss_dssp TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC
T ss_pred ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheech
Confidence 899999988888766666666666666 5555555544
Q ss_pred ----------------------------------CCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCc
Q 038739 120 ----------------------------------GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN 165 (477)
Q Consensus 120 ----------------------------------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 165 (477)
+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.
T Consensus 234 ~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred hhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence 333444777899999999999996 678889999999999999999
Q ss_pred CCCcCCcCCCCCCCCCEEEccCCccccccc-hhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccc
Q 038739 166 FSGDLLGPIGNLRSLEAINVAKCNFSGQIT-SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLT 244 (477)
Q Consensus 166 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 244 (477)
+++..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+.......+..+++|++|++++|.+....
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 392 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC
Confidence 998888889999999999999999886554 4588999999999999999877632233888999999999999766543
Q ss_pred ccCCccCcCcccEEEccCCCCCCc-c-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCc
Q 038739 245 KATSDTTSQKLKYIGLRSCNLTKF-P-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPV 322 (477)
Q Consensus 245 ~~~~~~~~~~L~~L~L~~n~l~~~-p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 322 (477)
.... ..+++|++|++++|.++.. + ..+..+++|++|++++|++.+..|..+. .+++|++|++++|++++......
T Consensus 393 ~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 393 TEAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD--GLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp TTTT-TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT--TCTTCCEEECTTCBCGGGEECSS
T ss_pred HHHh-cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh--CCCCCCEEECCCCCCCccccccc
Confidence 3222 2577899999999999544 3 4588899999999999999988888887 89999999999999986321100
Q ss_pred ccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccC
Q 038739 323 VLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKG 402 (477)
Q Consensus 323 ~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p 402 (477)
.....+++|+.|++++|++++..|..|+++++|+.|||++|++++..|..+..++ .| +|++++|++++..|
T Consensus 470 -------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 470 -------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GI-YLNLASNHISIILP 540 (606)
T ss_dssp -------CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC-SC-EEECCSSCCCCCCG
T ss_pred -------hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc-cc-EEECcCCcccccCH
Confidence 0112356788888888888887788888888888888888888888888888887 78 88888888877666
Q ss_pred CC
Q 038739 403 CE 404 (477)
Q Consensus 403 ~~ 404 (477)
..
T Consensus 541 ~~ 542 (606)
T 3t6q_A 541 SL 542 (606)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-46 Score=391.07 Aligned_cols=357 Identities=20% Similarity=0.257 Sum_probs=276.2
Q ss_pred CCccCCCCCCCCEEEccCCCCCCC-----------------cccccc--CCCCCCEEEcccccCCccccccCCCCCCCCE
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGE-----------------LPVSVG--NLHSLEELDLSANFLSSEWPISIGNLSSLKE 62 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 62 (477)
||+.|+++++|++|+|++|.+++. +|..+. ++++|++|++++|++.+.+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 577788888888888888888864 777777 8888888888888888888888888888888
Q ss_pred EecccCc-Ccc-cCCcccCCC------CCCCEEeCcCCCCCCcccc--cccCCCCccEEEccCCcCcCCCCccccCCCCC
Q 038739 63 LDLSQNR-FFG-ELPISMGNL------GSLKVLDLSQNGYFGELPT--SIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSL 132 (477)
Q Consensus 63 L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 132 (477)
|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .++++++|++|++++|.++|.+| .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 8888887 776 677766665 78888888888886 6776 78888888888888888887777 77777888
Q ss_pred CEEEccCCCCcccCCccccCCCC-CcEEECCCCcCCCcCCcCCCCCC--CCCEEEccCCccccccchhhh-------cCC
Q 038739 133 KLLDLRSCGFWGKVPHSIGNFTQ-LQYLHLGSNNFSGDLLGPIGNLR--SLEAINVAKCNFSGQITSSLR-------NLS 202 (477)
Q Consensus 133 ~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~-------~l~ 202 (477)
++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+++..|..+. .++
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 88888888776 67777777887 888888888887 5666666544 788888888888877777776 667
Q ss_pred CCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccC------cCcccEEEccCCCCCCcchhhh--c
Q 038739 203 QLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTT------SQKLKYIGLRSCNLTKFPNFLQ--N 274 (477)
Q Consensus 203 ~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~------~~~L~~L~L~~n~l~~~p~~l~--~ 274 (477)
+|++|++++|.+....... +..+++|+.|++++|.+..++....... +++|++|++++|.++.+|..+. .
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~--~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKEL--FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCCSCCTHH--HHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCEEECcCCccCcCCHHH--HccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 8888888888887544433 5667788888888887765444332211 1278888888888887777665 7
Q ss_pred CCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCCh
Q 038739 275 QHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPS 354 (477)
Q Consensus 275 ~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~ 354 (477)
+++|+.|++++|++++ +|..+. .+++|+.|++++|+. +++|++.+.+|.
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~--~l~~L~~L~Ls~N~~----------------------------ls~N~l~~~~p~ 560 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPL--NSSTLKGFGIRNQRD----------------------------AQGNRTLREWPE 560 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGG--GCSSCCEEECCSCBC----------------------------TTCCBCCCCCCT
T ss_pred CCCcCEEECCCCCCCC-cChhhh--cCCCCCEEECCCCcc----------------------------cccCcccccChH
Confidence 7888888888888886 677766 678888888877652 356889999999
Q ss_pred hhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCc
Q 038739 355 WICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPL 399 (477)
Q Consensus 355 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 399 (477)
.++++++|++|||++|++ +.+|..+. + +|++|++++|++..
T Consensus 561 ~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~-~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDI-RKVNEKIT--P-NISVLDIKDNPNIS 601 (636)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC--T-TCCEEECCSCTTCE
T ss_pred HHhcCCCCCEEECCCCcC-CccCHhHh--C-cCCEEECcCCCCcc
Confidence 999999999999999999 58888765 5 99999999998864
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-45 Score=384.58 Aligned_cols=390 Identities=20% Similarity=0.161 Sum_probs=249.5
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL 81 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 81 (477)
+|..+. +++++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|++++|.+++..|..|+++
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 555554 577888888888877777677788888888888888777777777788888888888887776667777788
Q ss_pred CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCCc---
Q 038739 82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQ--- 157 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~--- 157 (477)
++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+.+|+
T Consensus 104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 888888888887776666677778888888888887765 4577777778888888887777665555444333222
Q ss_pred -EEECCCCcCCCcCCc----------------------------------------------------------------
Q 038739 158 -YLHLGSNNFSGDLLG---------------------------------------------------------------- 172 (477)
Q Consensus 158 -~L~l~~n~l~~~~~~---------------------------------------------------------------- 172 (477)
+|++++|.+++..+.
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 344444443322211
Q ss_pred --------------------------------------CCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcC
Q 038739 173 --------------------------------------PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214 (477)
Q Consensus 173 --------------------------------------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 214 (477)
.+..+++|++|++++|.+ +.+| .+ .+++|++|++++|..
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred hheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence 223334445555555554 2333 22 445555555555533
Q ss_pred ccccchhhhhcCCCCCCEEeCCCCCCccccccCCc-cCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCC
Q 038739 215 RGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD-TTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVP 293 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p 293 (477)
.+.. .+..+++|++|++++|.+...+..+.. ..+++|++|++++|.++.+|..+..+++|++|++++|++.+..|
T Consensus 341 ~~~~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 341 SISF----KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp CEEC----CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred ccch----hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC
Confidence 3222 155677888888888866554322222 25667778888777777777667777777777777777776666
Q ss_pred -ccCCcccCCCCCeEEecCCcccccCCCCc---------ccCCC--CC-CCC---CCCCccceeecCCCcCccCCChhhh
Q 038739 294 -KWLLDPNMQNLNGFNFSHNLLTGFDQHPV---------VLPGN--KG-PLP---VPPPGTITYLASNNSLTGEIPSWIC 357 (477)
Q Consensus 294 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~l~~n--~~-~~~---~~~~~l~~L~ls~n~l~~~~p~~~~ 357 (477)
..+. .+++|+.|++++|++++..+..+ ++++| .+ .+| ..+++|+.|++++|++++..|..++
T Consensus 417 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 417 FSAFL--SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TTTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred hhhhh--ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 4454 67777777777777776554432 23333 11 112 2345666666666666666666666
Q ss_pred ccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCC
Q 038739 358 NLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCE 404 (477)
Q Consensus 358 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~ 404 (477)
++++|++|+|++|++++.+|..|..++ +|++|++++|+++ .+|..
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLY-SLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCT-TCCEEECTTSCCC-CEESC
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCC-cCCEEECCCCcCc-ccCHh
Confidence 666666666666666666666666666 6666666666665 44443
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.3e-45 Score=381.03 Aligned_cols=390 Identities=21% Similarity=0.170 Sum_probs=260.9
Q ss_pred CccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739 3 PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG 82 (477)
Q Consensus 3 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 82 (477)
|.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..+++++
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 45789999999999999999988888999999999999999999988899999999999999999999877778899999
Q ss_pred CCCEEeCcCCCCCC-cccccccCCCCccEEEccCCcCcCCCCccccCCC---------------------------CCCE
Q 038739 83 SLKVLDLSQNGYFG-ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFS---------------------------SLKL 134 (477)
Q Consensus 83 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------------~L~~ 134 (477)
+|++|++++|.+.+ .+|..++++++|++|++++|++++..+..++.++ +|++
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~ 208 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeee
Confidence 99999999999976 5689999999999999999999876665554333 3334
Q ss_pred EEccCCCCc-----------------------------------------------------------------------
Q 038739 135 LDLRSCGFW----------------------------------------------------------------------- 143 (477)
Q Consensus 135 L~L~~n~~~----------------------------------------------------------------------- 143 (477)
|++++|.+.
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence 444443321
Q ss_pred ---------ccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcC
Q 038739 144 ---------GKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSY 214 (477)
Q Consensus 144 ---------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 214 (477)
..+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+
T Consensus 289 ~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 289 AMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp EEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred EEEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence 0111 344556777777777777 3455 23 5556666666555333222 334455555555555555
Q ss_pred ccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc--hhhhcCCCcCEEeccCCcccccC
Q 038739 215 RGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP--NFLQNQHHLRFMDLSDNRIQGKV 292 (477)
Q Consensus 215 ~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p--~~l~~~~~L~~L~Ls~n~i~~~~ 292 (477)
.+.......+..+++|++|++++|.+...+ .....+++|++|++++|.+..++ ..+..+++|++|++++|++.+..
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred CCCcchhhhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence 444211112444555555555555433322 11113344445555544443322 23444444444444444444444
Q ss_pred CccCCcccCCCCCeEEecCCccccc-CCCCc---------ccCCC--CCCC---CCCCCccceeecCCCcCccCCChhhh
Q 038739 293 PKWLLDPNMQNLNGFNFSHNLLTGF-DQHPV---------VLPGN--KGPL---PVPPPGTITYLASNNSLTGEIPSWIC 357 (477)
Q Consensus 293 p~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~---------~l~~n--~~~~---~~~~~~l~~L~ls~n~l~~~~p~~~~ 357 (477)
|..+. .+++|++|++++|++++. .+..+ ++++| .+.. ...+++|+.|++++|++++.+|..++
T Consensus 441 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 441 DGIFL--GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp TTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred hhhhc--CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 44443 444444444444444431 12111 33333 1111 23468999999999999999999999
Q ss_pred ccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCC
Q 038739 358 NLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGC 403 (477)
Q Consensus 358 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~ 403 (477)
++++|++|||++|+++ .+|..+..++++|++|++++|++.+..+-
T Consensus 519 ~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 519 QLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999999 67877988874699999999999876653
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-45 Score=387.18 Aligned_cols=376 Identities=18% Similarity=0.262 Sum_probs=324.3
Q ss_pred CCCCEEEccCCCCCCCccccccCCCCCCEEEccccc--------------------------------------------
Q 038739 10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANF-------------------------------------------- 45 (477)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------------------------------------- 45 (477)
.+++.|+|+++.+.|.+|.+++++++|++|+|++|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 478999999999999999999999999999999884
Q ss_pred ----------------------------------CCccccccCCCCCCCCEEecccCcCccc-----------------C
Q 038739 46 ----------------------------------LSSEWPISIGNLSSLKELDLSQNRFFGE-----------------L 74 (477)
Q Consensus 46 ----------------------------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~ 74 (477)
+++ +|..++++++|++|++++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 334 778899999999999999999985 8
Q ss_pred CcccC--CCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCc-CcC-CCCccccCC------CCCCEEEccCCCCcc
Q 038739 75 PISMG--NLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN-FSG-EFPWSTGNF------SSLKLLDLRSCGFWG 144 (477)
Q Consensus 75 ~~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~~~~ 144 (477)
|..++ ++++|++|++++|++.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 99999 99999999999999999999999999999999999998 988 788888776 99999999999997
Q ss_pred cCCc--cccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCC-CCEEeCcCCcCccccchh
Q 038739 145 KVPH--SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQ-LTALDLAQNSYRGMIELD 221 (477)
Q Consensus 145 ~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~ 221 (477)
.+|. .++.+++|++|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.+... +..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYI-PNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSC-CSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCccc-chh
Confidence 7888 89999999999999999998888 8999999999999999998 78888999999 99999999999844 333
Q ss_pred hhhcC--CCCCCEEeCCCCCCccccccCCc------cCcCcccEEEccCCCCCCcchh-hhcCCCcCEEeccCCcccccC
Q 038739 222 VLLTS--WKNLEFLGLSLNRLSVLTKATSD------TTSQKLKYIGLRSCNLTKFPNF-LQNQHHLRFMDLSDNRIQGKV 292 (477)
Q Consensus 222 ~~~~~--~~~L~~L~ls~n~i~~~~~~~~~------~~~~~L~~L~L~~n~l~~~p~~-l~~~~~L~~L~Ls~n~i~~~~ 292 (477)
+.. +++|+.|++++|.+......... ..+++|++|++++|.++.+|.. +..+++|++|++++|+++ .+
T Consensus 396 --~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i 472 (636)
T 4eco_A 396 --FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI 472 (636)
T ss_dssp --CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred --hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence 343 45899999999987654322111 1456899999999999999855 556999999999999999 66
Q ss_pred CccCCcccC-------CCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeE
Q 038739 293 PKWLLDPNM-------QNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESL 365 (477)
Q Consensus 293 p~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~L 365 (477)
|..... .. ++|+.|++++|+++.+. ..+ ....+++|+.|++++|++++ +|..+..+++|+.|
T Consensus 473 ~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~--------~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L 541 (636)
T 4eco_A 473 PKNSLK-DENENFKNTYLLTSIDLRFNKLTKLS-DDF--------RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541 (636)
T ss_dssp CSSSSE-ETTEECTTGGGCCEEECCSSCCCBCC-GGG--------STTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEE
T ss_pred CHHHhc-cccccccccCCccEEECcCCcCCccC-hhh--------hhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEE
Confidence 665441 22 29999999999998532 211 00257899999999999998 89999999999999
Q ss_pred eC------CCCcCcccCCchhhhcccccceeecCCCcCCcccCCCCC
Q 038739 366 VL------SHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESG 406 (477)
Q Consensus 366 dL------s~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~ 406 (477)
+| ++|++.+.+|..+..++ +|++|++++|++ +.+|....
T Consensus 542 ~Ls~N~~ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 542 GIRNQRDAQGNRTLREWPEGITLCP-SLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp ECCSCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC-CBCCSCCC
T ss_pred ECCCCcccccCcccccChHHHhcCC-CCCEEECCCCcC-CccCHhHh
Confidence 99 56888999999999998 999999999999 88887643
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-44 Score=374.80 Aligned_cols=391 Identities=20% Similarity=0.201 Sum_probs=263.0
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL 81 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 81 (477)
||+.+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|.+|.++++|++|++++|++++..+..|+++
T Consensus 20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 566554 688888998888887778888888888899988888888777888888888888888888887777778888
Q ss_pred CCCCEEeCcCCCCCC-cccccccCCCCccEEEccCCcCcCCCC-ccccCCCCCCEEEccCCCCcccCCccccCCC-----
Q 038739 82 GSLKVLDLSQNGYFG-ELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT----- 154 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~----- 154 (477)
++|++|++++|++++ ..|..+.++++|++|++++|.+.+.+| ..+.++++|++|++++|.+.+..|..+..++
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 888888888888875 356678888888888888887443444 5788888888888888888777777666554
Q ss_pred -------------------CCcEEECCCCcCCCcC--C-cCCCCCCCCCEEEccCCccccccch----hhhc--------
Q 038739 155 -------------------QLQYLHLGSNNFSGDL--L-GPIGNLRSLEAINVAKCNFSGQITS----SLRN-------- 200 (477)
Q Consensus 155 -------------------~L~~L~l~~n~l~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~-------- 200 (477)
+|++|++++|.+++.. + .....+++|+.|++++|.+++..+. .+..
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 4555555555554321 0 1111233333333333333221111 1111
Q ss_pred ---------------------------------------------------CCCCCEEeCcCCcCccccchhhhhcCCCC
Q 038739 201 ---------------------------------------------------LSQLTALDLAQNSYRGMIELDVLLTSWKN 229 (477)
Q Consensus 201 ---------------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 229 (477)
.++|+.|++++|.+..... . .+..+++
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~-~-~~~~l~~ 335 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC-S-FSQHLKS 335 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH-H-HHHHCTT
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCH-H-HHhcCcc
Confidence 2344445555554442221 1 1346788
Q ss_pred CCEEeCCCCCCccccc--cCCccCcCcccEEEccCCCCCCcc---hhhhcCCCcCEEeccCCcccccCCccCCcccCCCC
Q 038739 230 LEFLGLSLNRLSVLTK--ATSDTTSQKLKYIGLRSCNLTKFP---NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNL 304 (477)
Q Consensus 230 L~~L~ls~n~i~~~~~--~~~~~~~~~L~~L~L~~n~l~~~p---~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L 304 (477)
|++|++++|.+..... ......+++|++|++++|.++.++ ..+..+++|++|++++|+++ .+|..+. .+++|
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~--~~~~L 412 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ--WPEKM 412 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC--CCTTC
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc--ccccc
Confidence 8888888886654211 111235678888888888887775 35778888888888888888 5677666 67888
Q ss_pred CeEEecCCcccccCCC------CcccCCC-CCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCC
Q 038739 305 NGFNFSHNLLTGFDQH------PVVLPGN-KGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 377 (477)
Q Consensus 305 ~~L~Ls~N~l~~~~~~------~~~l~~n-~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 377 (477)
++|++++|+++..... .+++++| ...++..+++|++|++++|+++ .+|. ...+++|++|||++|++++.+|
T Consensus 413 ~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp CEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred cEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 8888888888754321 1244454 2233445667777777777776 5554 3567777777777777776666
Q ss_pred chhhhcccccceeecCCCcCCcccC
Q 038739 378 QCLGNFSDELLVLDLQGNNLPLSKG 402 (477)
Q Consensus 378 ~~l~~l~~~L~~L~Ls~N~l~~~~p 402 (477)
..+..++ +|++|++++|++.+.+|
T Consensus 491 ~~~~~l~-~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 491 GIFDRLT-SLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TGGGGCT-TCCEEECCSSCBCCCHH
T ss_pred HHHhcCc-ccCEEEecCCCccCCCc
Confidence 6677776 77777777777766555
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=391.22 Aligned_cols=390 Identities=22% Similarity=0.208 Sum_probs=239.7
Q ss_pred CccCCCCCCCCEEEccCCCCCCCc-cccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcc--cC
Q 038739 3 PSSLGNLSKLLHLDLSLNELQGEL-PVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPIS--MG 79 (477)
Q Consensus 3 p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~ 79 (477)
|.+|+++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++|++++|.+++..|.. +.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 445566666666666666443333 555666666666666666666555666666666666666666665544433 56
Q ss_pred CCCCCCEEeCcCCCCCCccc-ccccCCCCccEEEccCCcCcCCCCccccC--------------------------CCC-
Q 038739 80 NLGSLKVLDLSQNGYFGELP-TSIRNLFSLEKLDLSFNNFSGEFPWSTGN--------------------------FSS- 131 (477)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------l~~- 131 (477)
++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+.. +++
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 66666666666666654433 35566666666666666555443333221 111
Q ss_pred -----CCEEEccCCCCcccCCcccc------------------------------------C--CCCCcEEECCCCcCCC
Q 038739 132 -----LKLLDLRSCGFWGKVPHSIG------------------------------------N--FTQLQYLHLGSNNFSG 168 (477)
Q Consensus 132 -----L~~L~L~~n~~~~~~~~~l~------------------------------------~--l~~L~~L~l~~n~l~~ 168 (477)
|++|++++|.+.+..+..+. . .++|+.|++++|.+.+
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 44555555444332222111 1 1467777777777777
Q ss_pred cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC
Q 038739 169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS 248 (477)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~ 248 (477)
..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+..++...+
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~~~~ 358 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN--FYGLPKVAYIDLQKNHIAIIQDQTF 358 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS--CSSCTTCCEEECCSCCCCCCCSSCS
T ss_pred cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH--hcCCCCCCEEECCCCCCCccChhhh
Confidence 77777788888888888888887777777888888888888888877665544 6777788888888876655543322
Q ss_pred ccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCcc----------------------CCcccCCCCCe
Q 038739 249 DTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKW----------------------LLDPNMQNLNG 306 (477)
Q Consensus 249 ~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~----------------------~~~~~l~~L~~ 306 (477)
..+++|++|++++|.++.++. +++|+.|++++|+++ .+|.. +. .+++|+.
T Consensus 359 -~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~--~l~~L~~ 430 (844)
T 3j0a_A 359 -KFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLL--RVPHLQI 430 (844)
T ss_dssp -CSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHT--TCTTCCE
T ss_pred -cCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhh--cCCccce
Confidence 245667777777776655432 334444444444433 11111 11 4566666
Q ss_pred EEecCCcccccCCCC----------cccCCC-C------CC---CCCCCCccceeecCCCcCccCCChhhhccCCCCeEe
Q 038739 307 FNFSHNLLTGFDQHP----------VVLPGN-K------GP---LPVPPPGTITYLASNNSLTGEIPSWICNLNILESLV 366 (477)
Q Consensus 307 L~Ls~N~l~~~~~~~----------~~l~~n-~------~~---~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~Ld 366 (477)
|++++|++++..+.. +++++| . +. ....+++|+.|++++|.+++..|..|.++++|+.||
T Consensus 431 L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 510 (844)
T 3j0a_A 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510 (844)
T ss_dssp EEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEE
T ss_pred eeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeE
Confidence 666666666433221 133333 1 11 122357888889999999888888888899999999
Q ss_pred CCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCC
Q 038739 367 LSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCES 405 (477)
Q Consensus 367 Ls~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~ 405 (477)
|++|++++..|..+. + +|++|++++|++++.+|..+
T Consensus 511 Ls~N~l~~l~~~~~~--~-~L~~L~Ls~N~l~~~~~~~~ 546 (844)
T 3j0a_A 511 LNSNRLTVLSHNDLP--A-NLEILDISRNQLLAPNPDVF 546 (844)
T ss_dssp EESCCCSSCCCCCCC--S-CCCEEEEEEECCCCCCSCCC
T ss_pred CCCCCCCccChhhhh--c-cccEEECCCCcCCCCChhHh
Confidence 999999876665554 4 78888888888888777543
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-44 Score=386.49 Aligned_cols=377 Identities=18% Similarity=0.239 Sum_probs=319.1
Q ss_pred CCCCEEEccCCCCCCCccccccCCCCCCEEEc-ccccCCcc---------------------------------------
Q 038739 10 SKLLHLDLSLNELQGELPVSVGNLHSLEELDL-SANFLSSE--------------------------------------- 49 (477)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~--------------------------------------- 49 (477)
.+++.|+|+++.+.|.+|..++++++|++|+| ++|.+.|.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46889999999999999999999999999999 66644322
Q ss_pred -------------------------------------ccccCCCCCCCCEEecccCcCcc-----------------cCC
Q 038739 50 -------------------------------------WPISIGNLSSLKELDLSQNRFFG-----------------ELP 75 (477)
Q Consensus 50 -------------------------------------~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~ 75 (477)
+|..++++++|++|+|++|++++ .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 77889999999999999999997 388
Q ss_pred cccC--CCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCc-CcC-CCCccccCC-------CCCCEEEccCCCCcc
Q 038739 76 ISMG--NLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNN-FSG-EFPWSTGNF-------SSLKLLDLRSCGFWG 144 (477)
Q Consensus 76 ~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~~~~ 144 (477)
..++ ++++|++|++++|++.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 8888 99999999999999999999999999999999999998 887 778655544 59999999999997
Q ss_pred cCCc--cccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCC-CCEEeCcCCcCccccchh
Q 038739 145 KVPH--SIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQ-LTALDLAQNSYRGMIELD 221 (477)
Q Consensus 145 ~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~ 221 (477)
.+|. .+.++++|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+... +..
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~ 637 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNI 637 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chh
Confidence 7888 8999999999999999999 677 8999999999999999998 78888999999 99999999999844 333
Q ss_pred hhhcCC--CCCCEEeCCCCCCccccc-cCC---ccCcCcccEEEccCCCCCCcchhh-hcCCCcCEEeccCCcccccCCc
Q 038739 222 VLLTSW--KNLEFLGLSLNRLSVLTK-ATS---DTTSQKLKYIGLRSCNLTKFPNFL-QNQHHLRFMDLSDNRIQGKVPK 294 (477)
Q Consensus 222 ~~~~~~--~~L~~L~ls~n~i~~~~~-~~~---~~~~~~L~~L~L~~n~l~~~p~~l-~~~~~L~~L~Ls~n~i~~~~p~ 294 (477)
+... ++|+.|++++|.+..... .+. ....++|+.|++++|.++.+|..+ ..+++|+.|+|++|+++ .+|.
T Consensus 638 --~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 638 --FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp --CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred --hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 4444 459999999997754322 111 114458999999999999999665 48999999999999999 6666
Q ss_pred cCCcc------cCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCC
Q 038739 295 WLLDP------NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLS 368 (477)
Q Consensus 295 ~~~~~------~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs 368 (477)
.+... .+++|+.|+|++|+++.+ +..+ ....+++|+.|++++|++++ +|..+..+++|+.|+|+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l--------~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDF--------RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGG--------STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred HHhccccccccccCCccEEECCCCCCccc-hHHh--------hhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence 55421 123899999999999843 2211 01256899999999999997 89999999999999997
Q ss_pred C------CcCcccCCchhhhcccccceeecCCCcCCcccCCCCC
Q 038739 369 H------NNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESG 406 (477)
Q Consensus 369 ~------N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~ 406 (477)
+ |++.+.+|..+..++ +|++|+|++|++ +.+|....
T Consensus 785 ~N~~ls~N~l~~~ip~~l~~L~-~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGITTCP-SLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC-CBCCSCCC
T ss_pred CCCCcccccccccChHHHhcCC-CCCEEECCCCCC-CccCHhhc
Confidence 6 888999999999998 999999999999 88987643
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-44 Score=373.19 Aligned_cols=389 Identities=21% Similarity=0.194 Sum_probs=267.7
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL 81 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 81 (477)
||..+. +++++|++++|.+++..+..|.++++|++|++++|++++..+.+|.++++|++|++++|++++..|..|.++
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 555443 467888888888877667777888888888888888777667777788888888888888776666777788
Q ss_pred CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCC----
Q 038739 82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL---- 156 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L---- 156 (477)
++|++|++++|++++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..++.+++|
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 888888888887765555567778888888888887775 357777777888888888777766655556555555
Q ss_pred cEEECCCCcCCCcCC-----------------------------------------------------------------
Q 038739 157 QYLHLGSNNFSGDLL----------------------------------------------------------------- 171 (477)
Q Consensus 157 ~~L~l~~n~l~~~~~----------------------------------------------------------------- 171 (477)
+.+++++|.+++..+
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 566666655443322
Q ss_pred ----------------cCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchh--------------
Q 038739 172 ----------------GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD-------------- 221 (477)
Q Consensus 172 ----------------~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-------------- 221 (477)
..+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+.......
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBS
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcc
Confidence 22333455666666666555 344444444 4555555554443221100
Q ss_pred ---hhhcCCCCCCEEeCCCCCCccccccCCc-cCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCc-cC
Q 038739 222 ---VLLTSWKNLEFLGLSLNRLSVLTKATSD-TTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPK-WL 296 (477)
Q Consensus 222 ---~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~-~~ 296 (477)
.....+++|++|++++|.+...+..+.. ..+++|++|++++|.++.++..+..+++|++|++++|++.+..+. .+
T Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 417 (570)
T 2z63_A 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417 (570)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTT
T ss_pred ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhh
Confidence 0015678899999999977655422222 256789999999998877776688888999999999988877663 44
Q ss_pred CcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCc-cCCChhhhccCCCCeEeCCCCcCccc
Q 038739 297 LDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLT-GEIPSWICNLNILESLVLSHNNLSGL 375 (477)
Q Consensus 297 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~ 375 (477)
. .+++|++|++++|++++..+..+ ..+++|+.|++++|.++ +.+|..++.+++|++|++++|++++.
T Consensus 418 ~--~l~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 418 L--SLRNLIYLDISHTHTRVAFNGIF----------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp T--TCTTCCEEECTTSCCEECCTTTT----------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred h--cCCCCCEEeCcCCcccccchhhh----------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 4 78889999999998887654332 33567777777777776 46777777777777777777777776
Q ss_pred CCchhhhcccccceeecCCCcCCcccCCCCCC
Q 038739 376 LPQCLGNFSDELLVLDLQGNNLPLSKGCESGE 407 (477)
Q Consensus 376 ~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~ 407 (477)
.|..|..++ +|++|++++|++++..|..+..
T Consensus 486 ~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 486 SPTAFNSLS-SLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp CTTTTTTCT-TCCEEECCSSCCSCCCTTTTTT
T ss_pred Chhhhhccc-CCCEEeCCCCcCCCCCHHHhhc
Confidence 677777776 7777777777777665554433
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-44 Score=371.35 Aligned_cols=378 Identities=19% Similarity=0.202 Sum_probs=309.1
Q ss_pred CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739 12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91 (477)
Q Consensus 12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 91 (477)
.+.++.++.+++ .+|..+. +++++|++++|++++..+.+|.++++|++|++++|++++..+..|+++++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 467888888887 5665553 5899999999999988888999999999999999999988888999999999999999
Q ss_pred CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc-cCCccccCCCCCcEEECCCCcCCCcC
Q 038739 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG-KVPHSIGNFTQLQYLHLGSNNFSGDL 170 (477)
Q Consensus 92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~ 170 (477)
|++++..+..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 99988888899999999999999999997666679999999999999999977 46899999999999999999999877
Q ss_pred CcCCCCCCCC----CEEEccCCccccccc---------------------------------------------------
Q 038739 171 LGPIGNLRSL----EAINVAKCNFSGQIT--------------------------------------------------- 195 (477)
Q Consensus 171 ~~~l~~l~~L----~~L~l~~n~l~~~~~--------------------------------------------------- 195 (477)
+..+..+++| +.+++++|.+++..+
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 7777777777 778887776654433
Q ss_pred ------------------------------hhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccc
Q 038739 196 ------------------------------SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTK 245 (477)
Q Consensus 196 ------------------------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~ 245 (477)
..+..+++|++|++++|.+.+.... +..+ +|+.|++++|.+..++.
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~---~~~~-~L~~L~l~~n~~~~l~~ 321 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNF-GWQHLELVNCKFGQFPT 321 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC---CSCC-CCSEEEEESCBCSSCCB
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh---hccC-CccEEeeccCcccccCc
Confidence 3344456677777777766543321 3334 56666666655443332
Q ss_pred cC------------------CccCcCcccEEEccCCCCCCc---chhhhcCCCcCEEeccCCcccccCCccCCcccCCCC
Q 038739 246 AT------------------SDTTSQKLKYIGLRSCNLTKF---PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNL 304 (477)
Q Consensus 246 ~~------------------~~~~~~~L~~L~L~~n~l~~~---p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L 304 (477)
.. ....+++|++|++++|.++.+ |..+..+++|++|++++|++.+..+. +. .+++|
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~--~l~~L 398 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL--GLEQL 398 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE--TCTTC
T ss_pred ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc--ccCCC
Confidence 11 003567899999999999765 67889999999999999999966554 65 89999
Q ss_pred CeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCc-ccCCchhhhc
Q 038739 305 NGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLS-GLLPQCLGNF 383 (477)
Q Consensus 305 ~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~l~~l 383 (477)
+.|++++|++++..+.. ....+++|+.|++++|.+++..|..+.++++|++|++++|+++ +.+|..+..+
T Consensus 399 ~~L~l~~n~l~~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFS---------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp CEEECTTSEEESCTTSC---------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred CEEEccCCccccccchh---------hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 99999999998764321 1235689999999999999999999999999999999999998 5799999999
Q ss_pred ccccceeecCCCcCCcccCCCCCCCC
Q 038739 384 SDELLVLDLQGNNLPLSKGCESGEAP 409 (477)
Q Consensus 384 ~~~L~~L~Ls~N~l~~~~p~~~~~~~ 409 (477)
+ +|++|++++|++++..|..+...+
T Consensus 470 ~-~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 470 R-NLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp T-TCCEEECTTSCCCEECTTTTTTCT
T ss_pred c-CCCEEECCCCccccCChhhhhccc
Confidence 8 999999999999998887765544
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.5e-43 Score=370.17 Aligned_cols=396 Identities=24% Similarity=0.216 Sum_probs=250.8
Q ss_pred ccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCC
Q 038739 4 SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83 (477)
Q Consensus 4 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 83 (477)
..|+++++|++|++++|.+++..|..|.++++|++|++++|++++..+.+|+++++|++|++++|++++..|..|+++++
T Consensus 43 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 35777888888888888888777777888888888888888887665556788888888888888877666677778888
Q ss_pred CCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCcccc--CCCCCCEEEccCCCCcccCCc-------------
Q 038739 84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG--NFSSLKLLDLRSCGFWGKVPH------------- 148 (477)
Q Consensus 84 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~------------- 148 (477)
|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+.+..|.
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence 88888888877777777777777777777777777655444332 335555555555555444333
Q ss_pred --------------------------------------cccCCC--CCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCC
Q 038739 149 --------------------------------------SIGNFT--QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKC 188 (477)
Q Consensus 149 --------------------------------------~l~~l~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 188 (477)
.+..++ +|++|++++|.+++..+..+..+++|++|++++|
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC
Confidence 333332 2555555555555555555555666666666666
Q ss_pred ccccccchhhhcCCCCCEEeCcCCcCccccc-----h--hhhhcCCCCCCEEeCCCCCCccccccCCc------------
Q 038739 189 NFSGQITSSLRNLSQLTALDLAQNSYRGMIE-----L--DVLLTSWKNLEFLGLSLNRLSVLTKATSD------------ 249 (477)
Q Consensus 189 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~--~~~~~~~~~L~~L~ls~n~i~~~~~~~~~------------ 249 (477)
.+++..+..+..+++|+.|++++|...+... . ...+..+++|++|++++|.+.......+.
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 5555444444444444444444332221000 0 00134455555555555544433221110
Q ss_pred --------------c-CcCcccEEEccCCCCCCc-chhhhcCCCcCEEeccCCcccccCC-ccCCcccCCCCCeEEecCC
Q 038739 250 --------------T-TSQKLKYIGLRSCNLTKF-PNFLQNQHHLRFMDLSDNRIQGKVP-KWLLDPNMQNLNGFNFSHN 312 (477)
Q Consensus 250 --------------~-~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~i~~~~p-~~~~~~~l~~L~~L~Ls~N 312 (477)
. ..+.|+.|++++|.++.+ |..+..+++|++|++++|++.+.+| ..+. .+++|++|++++|
T Consensus 363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR--GLENIFEIYLSYN 440 (680)
T ss_dssp CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT--TCTTCCEEECCSC
T ss_pred CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc--CcccccEEecCCC
Confidence 0 123566666677777554 4567777888888888888876665 3444 6778888888888
Q ss_pred cccccCCCCc---------ccCCC----CCCCCC---CCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccC
Q 038739 313 LLTGFDQHPV---------VLPGN----KGPLPV---PPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLL 376 (477)
Q Consensus 313 ~l~~~~~~~~---------~l~~n----~~~~~~---~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~ 376 (477)
++++..+..+ ++.+| .+.+|. .+++|+.|++++|++++..+..|.++++|++|++++|++++..
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccc
Confidence 8776654433 33333 123333 3467888888888888777777888888888888888887542
Q ss_pred C--------chhhhcccccceeecCCCcCCcccCC
Q 038739 377 P--------QCLGNFSDELLVLDLQGNNLPLSKGC 403 (477)
Q Consensus 377 p--------~~l~~l~~~L~~L~Ls~N~l~~~~p~ 403 (477)
+ ..|..++ +|++|++++|+++ .+|.
T Consensus 521 ~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~-~i~~ 553 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLS-HLHILNLESNGFD-EIPV 553 (680)
T ss_dssp STTSTTSCCCTTTTCT-TCCEEECCSSCCC-CCCT
T ss_pred hhhccCCcchhhcCCC-CCCEEECCCCCCC-CCCH
Confidence 2 2367777 8888888888887 4554
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-43 Score=355.68 Aligned_cols=357 Identities=19% Similarity=0.144 Sum_probs=215.1
Q ss_pred CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccC-CcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEE
Q 038739 34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGEL-PISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLD 112 (477)
Q Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 112 (477)
++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34445555554444444444444445555555544443222 33444444555555555444444444444444555555
Q ss_pred ccCCcCcCCCCcc--ccCCCCCCEEEccCCCCcccCCcc-ccCCCCCcEEECCCCcCCCcCCcCCCCC--CCCCEEEccC
Q 038739 113 LSFNNFSGEFPWS--TGNFSSLKLLDLRSCGFWGKVPHS-IGNFTQLQYLHLGSNNFSGDLLGPIGNL--RSLEAINVAK 187 (477)
Q Consensus 113 Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~ 187 (477)
+++|.+++.++.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 5554444322222 444444555555544444443333 4444455555555554444444444333 3444455554
Q ss_pred Cccccccchh--------hhcCCCCCEEeCcCCcCccccchhh-hhcCCCCCCEEeCCCCCCcc----------ccccCC
Q 038739 188 CNFSGQITSS--------LRNLSQLTALDLAQNSYRGMIELDV-LLTSWKNLEFLGLSLNRLSV----------LTKATS 248 (477)
Q Consensus 188 n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~ls~n~i~~----------~~~~~~ 248 (477)
|.+.+..+.. +..+++|++|++++|.+.+..+... .....++|+.|++++|.+.. ......
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 4444322211 1133445555555555444333220 01112445555555442211 111111
Q ss_pred cc-CcCcccEEEccCCCCCCc-chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCC
Q 038739 249 DT-TSQKLKYIGLRSCNLTKF-PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPG 326 (477)
Q Consensus 249 ~~-~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~ 326 (477)
.. ..++|++|++++|.++.+ |..+..+++|++|++++|++++..|..+. .+++|+.|++++|++++..+..+
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~---- 343 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQNFLGSIDSRMF---- 343 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGGG----
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc--CcccCCEEECCCCccCCcChhHh----
Confidence 11 346899999999999665 67788999999999999999988888887 89999999999999987654332
Q ss_pred CCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCC
Q 038739 327 NKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGC 403 (477)
Q Consensus 327 n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~ 403 (477)
..+++|++|++++|++++..|..|.++++|++|+|++|++++..+..+..++ +|++|++++|++++.+|.
T Consensus 344 ------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 344 ------ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp ------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBCCCTTT
T ss_pred ------cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC-cccEEEccCCCcccCCCc
Confidence 3467899999999999998899999999999999999999977677788898 999999999999998884
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-42 Score=369.05 Aligned_cols=398 Identities=20% Similarity=0.162 Sum_probs=309.0
Q ss_pred CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739 1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGN 80 (477)
Q Consensus 1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 80 (477)
+||..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..+..|++
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 3677665 79999999999999888888999999999999999999998999999999999999999999666667999
Q ss_pred CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCcccc--CCCCCcE
Q 038739 81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG--NFTQLQY 158 (477)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~ 158 (477)
+++|++|++++|++++..+..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|++
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 99999999999999887778999999999999999999988888999999999999999999887776554 5689999
Q ss_pred EECCCCcCCCcCCcCCCCC---------------------------CCCCEEEccCCccccccchhhhcCCC--CCEEeC
Q 038739 159 LHLGSNNFSGDLLGPIGNL---------------------------RSLEAINVAKCNFSGQITSSLRNLSQ--LTALDL 209 (477)
Q Consensus 159 L~l~~n~l~~~~~~~l~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L 209 (477)
|++++|.+++..+..+..+ ++|+.|++++|.+++..+.++..++. |++|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 9999999988777666544 45677778888887777777777654 899999
Q ss_pred cCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC------Ccch----hhhcCCCcC
Q 038739 210 AQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT------KFPN----FLQNQHHLR 279 (477)
Q Consensus 210 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~------~~p~----~l~~~~~L~ 279 (477)
++|.+.+..+.. +..+++|++|++++|.+........ ..+++|++|++++|... .+|. .+..+++|+
T Consensus 256 s~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 256 SYNNLNVVGNDS--FAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp TTSCCCEECTTT--TTTCTTCCEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred CCCCcCccCccc--ccCcccccEeeCCCCccCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 998888776654 7788889999999887665433222 25678888888876543 3442 567788888
Q ss_pred EEeccCCcccccCCccCCcccCCCCCeEEecCCcccccC--CC-----------CcccCCC--CCC---CCCCCCcccee
Q 038739 280 FMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFD--QH-----------PVVLPGN--KGP---LPVPPPGTITY 341 (477)
Q Consensus 280 ~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~--~~-----------~~~l~~n--~~~---~~~~~~~l~~L 341 (477)
+|++++|++.+..+..+. .+++|++|++++|.++... .. .+++++| .+. ....+++|+.|
T Consensus 333 ~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 410 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410 (680)
T ss_dssp EEECCSCCBCCCCTTTTT--TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred EEECCCCccCCCChhHhc--cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEE
Confidence 888888888887777776 7888888888888654221 11 1133333 111 12235567777
Q ss_pred ecCCCcCccCCC-hhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCC--cccCCCCC
Q 038739 342 LASNNSLTGEIP-SWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLP--LSKGCESG 406 (477)
Q Consensus 342 ~ls~n~l~~~~p-~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~--~~~p~~~~ 406 (477)
++++|.+++.+| ..+.++++|++|++++|++++..+..|..++ +|++|++++|.+. +.+|..+.
T Consensus 411 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp ECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT-TCCEEECTTSCCBCTTCSSCTTT
T ss_pred eCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc-ccccchhccccccccccCCcccc
Confidence 777777776555 5667777777777777777766666777776 7777777777765 45555443
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-43 Score=379.35 Aligned_cols=395 Identities=23% Similarity=0.277 Sum_probs=294.5
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccc-cccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEW-PISIGNLSSLKELDLSQNRFFGELPISMGN 80 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 80 (477)
||. -.++|++|||++|.+++..+..|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+.+..|..|.+
T Consensus 19 vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 19 VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 565 3578999999999999888999999999999999999665555 788999999999999999999888999999
Q ss_pred CCCCCEEeCcCCCCCCccccc--ccCCCCccEEEccCCcCcCCCC-ccccCCCCCCEEEccCCCCcccCCccccCC--CC
Q 038739 81 LGSLKVLDLSQNGYFGELPTS--IRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKVPHSIGNF--TQ 155 (477)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~ 155 (477)
+++|++|++++|.+++..+.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+.+..+..+..+ ++
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 999999999999998866654 9999999999999999987655 578999999999999999988888877766 77
Q ss_pred CcEEECCCCcCCCcCCcCCCCCCC------CCEEEccCCccccccchhhhc-----------------------------
Q 038739 156 LQYLHLGSNNFSGDLLGPIGNLRS------LEAINVAKCNFSGQITSSLRN----------------------------- 200 (477)
Q Consensus 156 L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~l~~----------------------------- 200 (477)
|+.|++++|.+.+..+..+..+++ |++|++++|.+++..+..+..
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 888888888877766665555544 777777777655433332221
Q ss_pred ---------CCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCc-ch
Q 038739 201 ---------LSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF-PN 270 (477)
Q Consensus 201 ---------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~-p~ 270 (477)
.++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.......+ ..+++|++|++++|.++.+ |.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRV--FETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCC--SSSCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSC
T ss_pred ChhhhhccccCCccEEECCCCcccccChhh--hhcCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHH
Confidence 256777777777776655444 6667777777777776654433222 2456677777777777554 45
Q ss_pred hhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCC----C-------------------------
Q 038739 271 FLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQH----P------------------------- 321 (477)
Q Consensus 271 ~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~------------------------- 321 (477)
.+..+++|++|++++|++.+..+..+. .+++|+.|++++|.+++.... .
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFK--FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSC--SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhc--CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeeccc
Confidence 666777777777777777655555555 566777777777666543210 0
Q ss_pred --------------------cccCCC-C-----CCCCCCCCccceeecCCCcCc-----cCCChhhhccCCCCeEeCCCC
Q 038739 322 --------------------VVLPGN-K-----GPLPVPPPGTITYLASNNSLT-----GEIPSWICNLNILESLVLSHN 370 (477)
Q Consensus 322 --------------------~~l~~n-~-----~~~~~~~~~l~~L~ls~n~l~-----~~~p~~~~~l~~L~~LdLs~N 370 (477)
+++++| . +..+...++|+.|++++|.++ +..+..|.++++|+.|||++|
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 022222 0 112223456666666666665 334456788999999999999
Q ss_pred cCcccCCchhhhcccccceeecCCCcCCcccCCCC
Q 038739 371 NLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCES 405 (477)
Q Consensus 371 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~ 405 (477)
++++..|..|..++ +|++|+|++|++++..|...
T Consensus 491 ~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 491 YLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp HHTTCCTTSSSSCC-SCSEEEEESCCCSSCCCCCC
T ss_pred cccccChhHccchh-hhheeECCCCCCCccChhhh
Confidence 99988888899998 99999999999987666543
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-43 Score=378.66 Aligned_cols=358 Identities=18% Similarity=0.218 Sum_probs=298.0
Q ss_pred CCccCCCCCCCCEEEccCCCCCC-----------------Ccccccc--CCCCCCEEEcccccCCccccccCCCCCCCCE
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQG-----------------ELPVSVG--NLHSLEELDLSANFLSSEWPISIGNLSSLKE 62 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 62 (477)
||+.|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++|++.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78899999999999999999998 3888877 9999999999999999999999999999999
Q ss_pred EecccCc-Ccc-cCCcccCC-------CCCCCEEeCcCCCCCCcccc--cccCCCCccEEEccCCcCcCCCCccccCCCC
Q 038739 63 LDLSQNR-FFG-ELPISMGN-------LGSLKVLDLSQNGYFGELPT--SIRNLFSLEKLDLSFNNFSGEFPWSTGNFSS 131 (477)
Q Consensus 63 L~Ls~n~-l~~-~~~~~~~~-------l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 131 (477)
|++++|+ +++ .+|..++. +++|++|++++|+++ .+|. .+.++++|++|++++|.++ .+| .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 887 67765544 459999999999997 7888 8999999999999999999 888 8999999
Q ss_pred CCEEEccCCCCcccCCccccCCCC-CcEEECCCCcCCCcCCcCCCCCCC--CCEEEccCCccccccchh---hh--cCCC
Q 038739 132 LKLLDLRSCGFWGKVPHSIGNFTQ-LQYLHLGSNNFSGDLLGPIGNLRS--LEAINVAKCNFSGQITSS---LR--NLSQ 203 (477)
Q Consensus 132 L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~---l~--~l~~ 203 (477)
|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|.+.+.+|.. +. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999999997 78888999998 999999999998 67777776654 999999999998765532 22 3458
Q ss_pred CCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCcc------CcCcccEEEccCCCCCCcchhhh--cC
Q 038739 204 LTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDT------TSQKLKYIGLRSCNLTKFPNFLQ--NQ 275 (477)
Q Consensus 204 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~------~~~~L~~L~L~~n~l~~~p~~l~--~~ 275 (477)
|+.|++++|.+....... +..+++|+.|++++|.+..++...... .+++|+.|++++|+++.+|..+. .+
T Consensus 675 L~~L~Ls~N~L~~lp~~~--~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l 752 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTEL--FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL 752 (876)
T ss_dssp EEEEECCSSCCCSCCHHH--HHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC
T ss_pred cCEEEccCCcCCccCHHH--HccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccC
Confidence 999999999998554432 668899999999999888655543322 22389999999999999998886 89
Q ss_pred CCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChh
Q 038739 276 HHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSW 355 (477)
Q Consensus 276 ~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~ 355 (477)
++|+.|+|++|++++ +|..+. .+++|+.|+|++|+ ++++|++.+.+|..
T Consensus 753 ~~L~~L~Ls~N~L~~-lp~~l~--~L~~L~~L~Ls~N~----------------------------~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSS-FPTQPL--NSSQLKAFGIRHQR----------------------------DAEGNRILRQWPTG 801 (876)
T ss_dssp TTCCEEECCSSCCSS-CCCGGG--GCTTCCEEECCCCB----------------------------CTTCCBCCCCCCTT
T ss_pred CCcCEEEeCCCCCCc-cchhhh--cCCCCCEEECCCCC----------------------------CcccccccccChHH
Confidence 999999999999997 787777 89999999999875 23557777777888
Q ss_pred hhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCccc
Q 038739 356 ICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSK 401 (477)
Q Consensus 356 ~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 401 (477)
++++++|+.|+|++|++ +.+|..+. + +|+.|+|++|++...-
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~-~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKLT--P-QLYILDIADNPNISID 843 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCCC--S-SSCEEECCSCTTCEEE
T ss_pred HhcCCCCCEEECCCCCC-CccCHhhc--C-CCCEEECCCCCCCccC
Confidence 88888888888888888 57776654 4 7888888888775443
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.8e-43 Score=358.88 Aligned_cols=370 Identities=21% Similarity=0.200 Sum_probs=266.8
Q ss_pred CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739 1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGN 80 (477)
Q Consensus 1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 80 (477)
+||..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++|+++ .+|.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence 3677666 89999999999999888889999999999999999999888889999999999999999998 56655 7
Q ss_pred CCCCCEEeCcCCCCCC-cccccccCCCCccEEEccCCcCcCCCCccccCCCCC--CEEEccCCCC--cccCCccccCC--
Q 038739 81 LGSLKVLDLSQNGYFG-ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSL--KLLDLRSCGF--WGKVPHSIGNF-- 153 (477)
Q Consensus 81 l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~n~~--~~~~~~~l~~l-- 153 (477)
+++|++|++++|++++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccccc
Confidence 8999999999999987 478899999999999999999875 356667777 9999998888 55555555442
Q ss_pred ------------------------C-------------------------------------------------------
Q 038739 154 ------------------------T------------------------------------------------------- 154 (477)
Q Consensus 154 ------------------------~------------------------------------------------------- 154 (477)
+
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 245 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhh
Confidence 2
Q ss_pred --CCcEEECCCCcCCCcCCcCC-----CCCCCCCEEEccCCccccccc-hhhhcC---CCCCEEeCcCCcCccccchhhh
Q 038739 155 --QLQYLHLGSNNFSGDLLGPI-----GNLRSLEAINVAKCNFSGQIT-SSLRNL---SQLTALDLAQNSYRGMIELDVL 223 (477)
Q Consensus 155 --~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~L~~n~l~~~~~~~~~ 223 (477)
+|++|++++|.+++.+|..+ ..+++|+.++++.|.+ .+| ..+..+ .+|+.|++++|.+.....
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---- 319 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---- 319 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC----
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc----
Confidence 34444444444444444443 4444444444444444 122 222222 445666666655543221
Q ss_pred hcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCc---chhhhcCCCcCEEeccCCcccccCCcc-CCcc
Q 038739 224 LTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF---PNFLQNQHHLRFMDLSDNRIQGKVPKW-LLDP 299 (477)
Q Consensus 224 ~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~---p~~l~~~~~L~~L~Ls~n~i~~~~p~~-~~~~ 299 (477)
...+++|++|++++|.+...... ....+++|++|++++|.++.+ |..+..+++|++|++++|++++.+|.. +.
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~-- 396 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-- 396 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC--
T ss_pred hhhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc--
Confidence 25677888888888866542221 112567788888888888743 456778888888888888888755554 43
Q ss_pred cCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCch
Q 038739 300 NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC 379 (477)
Q Consensus 300 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~ 379 (477)
.+++|+.|++++|++++..+..+ .++|+.|++++|+++ .+|..+..+++|++|+|++|+++ .+|..
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 462 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCL------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG 462 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSC------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT
T ss_pred cCccCCEEECcCCCCCcchhhhh------------cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH
Confidence 67788888888888876433221 267888888888888 77877778888888888888888 45554
Q ss_pred -hhhcccccceeecCCCcCCcccC
Q 038739 380 -LGNFSDELLVLDLQGNNLPLSKG 402 (477)
Q Consensus 380 -l~~l~~~L~~L~Ls~N~l~~~~p 402 (477)
+..++ +|++|++++|++++.++
T Consensus 463 ~~~~l~-~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 463 IFDRLT-SLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTTCT-TCCEEECCSSCBCCCHH
T ss_pred HhccCC-cccEEECcCCCCcccCC
Confidence 77787 88888888888876544
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.1e-41 Score=346.11 Aligned_cols=369 Identities=22% Similarity=0.205 Sum_probs=240.7
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL 81 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 81 (477)
||..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|++++|+++ .+|.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence 454443 56667777777766666666666777777777777666666666666677777777777666 34443 56
Q ss_pred CCCCEEeCcCCCCCCc-ccccccCCCCccEEEccCCcCcCCCCccccCCCCC--CEEEccCCCC--cccCCccccCCC--
Q 038739 82 GSLKVLDLSQNGYFGE-LPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSL--KLLDLRSCGF--WGKVPHSIGNFT-- 154 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~n~~--~~~~~~~l~~l~-- 154 (477)
++|++|++++|++++. .|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 6677777777766542 345666666777777777666542 23333444 6666666666 444444443322
Q ss_pred ------------------------CCcEEECCCCcC----------------------------CCc----CCcCCCCCC
Q 038739 155 ------------------------QLQYLHLGSNNF----------------------------SGD----LLGPIGNLR 178 (477)
Q Consensus 155 ------------------------~L~~L~l~~n~l----------------------------~~~----~~~~l~~l~ 178 (477)
+|+.+++++|.. .+. .+.. ...+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~ 276 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPR 276 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcc
Confidence 233333333210 000 0000 0012
Q ss_pred CCCEEEccCCccccccchhh-----hcC--------------------------CCCCEEeCcCCcCccccchhhhhcCC
Q 038739 179 SLEAINVAKCNFSGQITSSL-----RNL--------------------------SQLTALDLAQNSYRGMIELDVLLTSW 227 (477)
Q Consensus 179 ~L~~L~l~~n~l~~~~~~~l-----~~l--------------------------~~L~~L~L~~n~l~~~~~~~~~~~~~ 227 (477)
+|++|++++|.+++.+|..+ ..+ .+|++|++++|.+..... ...+
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~l 352 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC----PPSP 352 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC----CSSC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC----ccCC
Confidence 56666666666665555443 222 456777777776643321 2677
Q ss_pred CCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc---hhhhcCCCcCEEeccCCcccccCCcc-CCcccCCC
Q 038739 228 KNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP---NFLQNQHHLRFMDLSDNRIQGKVPKW-LLDPNMQN 303 (477)
Q Consensus 228 ~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p---~~l~~~~~L~~L~Ls~n~i~~~~p~~-~~~~~l~~ 303 (477)
++|++|++++|.+...... ....+++|++|++++|.++.++ ..+..+++|++|++++|++++.+|.. +. .+++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--~l~~ 429 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA--WAES 429 (562)
T ss_dssp CCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC--CCTT
T ss_pred CCceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc--Cccc
Confidence 8899999999876642221 1235778999999999887654 45778899999999999998756654 44 7889
Q ss_pred CCeEEecCCcccccCCCCcccCCCCCCCCCCC-CccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCch-hh
Q 038739 304 LNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPP-PGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC-LG 381 (477)
Q Consensus 304 L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~-~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-l~ 381 (477)
|+.|++++|++++..+. .+ ++|+.|++++|+++ .+|..+..+++|++|||++|+++ .+|.. +.
T Consensus 430 L~~L~l~~n~l~~~~~~-------------~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 494 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFR-------------CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494 (562)
T ss_dssp CCEEECCSSCCCGGGGS-------------SCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred CCEEECCCCCCCcchhh-------------hhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence 99999999988765332 23 68999999999998 67877779999999999999999 56665 88
Q ss_pred hcccccceeecCCCcCCcccC
Q 038739 382 NFSDELLVLDLQGNNLPLSKG 402 (477)
Q Consensus 382 ~l~~~L~~L~Ls~N~l~~~~p 402 (477)
.++ +|++|++++|++.+.+|
T Consensus 495 ~l~-~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 495 RLT-SLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCT-TCCCEECCSCCBCCCHH
T ss_pred cCC-CCCEEEecCCCcCCCcc
Confidence 888 89999999999887655
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.3e-40 Score=348.11 Aligned_cols=390 Identities=22% Similarity=0.172 Sum_probs=255.1
Q ss_pred CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739 1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGN 80 (477)
Q Consensus 1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 80 (477)
+||+.+. +++++|||++|.|++..+.+|.++++|++|+|++|+|+++.+.+|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 3566554 47999999999999888889999999999999999999888889999999999999999999777788999
Q ss_pred CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCC---
Q 038739 81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL--- 156 (477)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--- 156 (477)
+++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+..+..+..+.++
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 9999999999999988777789999999999999999975 467888899999999999999877666554432221
Q ss_pred -cEEECCCCcCCCcCC----------------------------------------------------------------
Q 038739 157 -QYLHLGSNNFSGDLL---------------------------------------------------------------- 171 (477)
Q Consensus 157 -~~L~l~~n~l~~~~~---------------------------------------------------------------- 171 (477)
..++++.|.++...+
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 233333332221000
Q ss_pred ---------------------------------------cCCCCCCCCCEEEccCCccccccc-----------------
Q 038739 172 ---------------------------------------GPIGNLRSLEAINVAKCNFSGQIT----------------- 195 (477)
Q Consensus 172 ---------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~----------------- 195 (477)
..+.....++.|++.+|.+....+
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence 001122345556665555432211
Q ss_pred --hhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCc--chh
Q 038739 196 --SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF--PNF 271 (477)
Q Consensus 196 --~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~--p~~ 271 (477)
.....+++|+.+++++|.+..............+|+.+++..+.+.... .....+++|+.+++..+..... +..
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC--SCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred CCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc--ccccccccccchhhhhccccccccccc
Confidence 1123567888999998887654333333556667777777766433222 2222455666666665554222 133
Q ss_pred hhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccc-cCCCCcccCCCCCCCCCCCCccceeecCCCcCcc
Q 038739 272 LQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTG-FDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTG 350 (477)
Q Consensus 272 l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~ 350 (477)
+..+++++.++++.|.+.+..+..+. .++.|+.|++++|++.. ..+.. ...+++|+.|++++|++++
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~--~~~~L~~L~Ls~N~~~~~~~~~~----------~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDI----------FTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSC----------CTTCTTCCEEECTTSCCCE
T ss_pred cccccccccccccccccccccccccc--cchhhhhhhhhhcccccccCchh----------hhhccccCEEECCCCccCC
Confidence 45556666666666666655555544 55666666666665332 21111 1234455566666666665
Q ss_pred CCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCCCC
Q 038739 351 EIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGE 407 (477)
Q Consensus 351 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~ 407 (477)
..|..|.++++|++|+|++|+|++..|..|..++ +|++|+|++|+|++..|.....
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT-TCCEEECTTSCCCBCCSSCTTC
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC-CCCEEECCCCcCCCCCHHHHHh
Confidence 5555566666666666666666555555555555 5666666666665555554443
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.1e-41 Score=344.90 Aligned_cols=361 Identities=21% Similarity=0.226 Sum_probs=265.6
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN 92 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 92 (477)
++||+++|.++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|++++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 68999999999 5776665 89999999999999888889999999999999999999888999999999999999999
Q ss_pred CCCCcccccccCCCCccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCC--cEEECCCCcC--C
Q 038739 93 GYFGELPTSIRNLFSLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL--QYLHLGSNNF--S 167 (477)
Q Consensus 93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~ 167 (477)
+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 997 56665 89999999999999987 478899999999999999999976 456777788 9999999998 5
Q ss_pred CcCCcCCCC--------------------------CCCCCEEEccCCc-------cccccchhhhc--------------
Q 038739 168 GDLLGPIGN--------------------------LRSLEAINVAKCN-------FSGQITSSLRN-------------- 200 (477)
Q Consensus 168 ~~~~~~l~~--------------------------l~~L~~L~l~~n~-------l~~~~~~~l~~-------------- 200 (477)
+..|..+.. +++|+.+++++|. +.+.++ .+..
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 555555444 3333344433332 111111 1111
Q ss_pred -------------CCCCCEEeCcCCcCccccchhhhh-----cCCCC--------------------------CCEEeCC
Q 038739 201 -------------LSQLTALDLAQNSYRGMIELDVLL-----TSWKN--------------------------LEFLGLS 236 (477)
Q Consensus 201 -------------l~~L~~L~L~~n~l~~~~~~~~~~-----~~~~~--------------------------L~~L~ls 236 (477)
.++|++|++++|.+.+..+.. + ..+++ |+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~--~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR--DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC--CCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccc--hhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcC
Confidence 235555555555555443332 2 33444 5555555
Q ss_pred CCCCccccccCCccCcCcccEEEccCCCCCC-cchhhhcCCCcCEEeccCCcccc--cCCccCCcccCCCCCeEEecCCc
Q 038739 237 LNRLSVLTKATSDTTSQKLKYIGLRSCNLTK-FPNFLQNQHHLRFMDLSDNRIQG--KVPKWLLDPNMQNLNGFNFSHNL 313 (477)
Q Consensus 237 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~-~p~~l~~~~~L~~L~Ls~n~i~~--~~p~~~~~~~l~~L~~L~Ls~N~ 313 (477)
+|.+.... ....+++|++|++++|.++. +|..+..+++|++|++++|++++ .+|..+. .+++|++|++++|+
T Consensus 311 ~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~--~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 311 GTRMVHML---CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT--QMKSLQQLDISQNS 385 (520)
T ss_dssp SSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT--TCTTCCEEECCSSC
T ss_pred CCcccccc---chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh--hCCCCCEEECCCCc
Confidence 55432221 11245677777887777754 56667777778888888877775 3445555 67778888888877
Q ss_pred ccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecC
Q 038739 314 LTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQ 393 (477)
Q Consensus 314 l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls 393 (477)
+++..+.. ....+++|+.|++++|++++.+|..+. ++|+.||+++|+++ .+|..+..++ +|++|+++
T Consensus 386 l~~~l~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~-~L~~L~L~ 452 (520)
T 2z7x_B 386 VSYDEKKG---------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLE-ALQELNVA 452 (520)
T ss_dssp CBCCGGGC---------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCT-TCCEEECC
T ss_pred CCcccccc---------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCC-CCCEEECC
Confidence 77622211 123467899999999999888777654 78999999999998 7888888888 99999999
Q ss_pred CCcCCcccCCC
Q 038739 394 GNNLPLSKGCE 404 (477)
Q Consensus 394 ~N~l~~~~p~~ 404 (477)
+|+++ .+|..
T Consensus 453 ~N~l~-~l~~~ 462 (520)
T 2z7x_B 453 SNQLK-SVPDG 462 (520)
T ss_dssp SSCCC-CCCTT
T ss_pred CCcCC-ccCHH
Confidence 99998 46654
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.4e-41 Score=345.61 Aligned_cols=369 Identities=24% Similarity=0.252 Sum_probs=265.9
Q ss_pred CccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcc-cCCcccCCC
Q 038739 3 PSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFG-ELPISMGNL 81 (477)
Q Consensus 3 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l 81 (477)
|.+|+++++|++|++++|.+++..|..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++++
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 5789999999999999999998888899999999999999999998888889999999999999999986 356789999
Q ss_pred CCCCEEeCcCCCCCCccc-ccccCCCCccEEEccCCcCcCCCCccccC------------------------CCCCCEEE
Q 038739 82 GSLKVLDLSQNGYFGELP-TSIRNLFSLEKLDLSFNNFSGEFPWSTGN------------------------FSSLKLLD 136 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------l~~L~~L~ 136 (477)
++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+.. +++|++|+
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 999999999998555555 67999999999999999998877776654 56777777
Q ss_pred ccCCCCcccC--C-ccccCCCCCcEEECCCC----------------------------cCCCcCC---------cC---
Q 038739 137 LRSCGFWGKV--P-HSIGNFTQLQYLHLGSN----------------------------NFSGDLL---------GP--- 173 (477)
Q Consensus 137 L~~n~~~~~~--~-~~l~~l~~L~~L~l~~n----------------------------~l~~~~~---------~~--- 173 (477)
+++|.+.+.. + .....+++|+.|++++| .+.+... ..
T Consensus 203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 7777776531 1 11122334444444433 3322100 00
Q ss_pred -----------------------CCCCCCCCEEEccCCccccccchhh-hcCCCCCEEeCcCCcCccccchh-hhhcCCC
Q 038739 174 -----------------------IGNLRSLEAINVAKCNFSGQITSSL-RNLSQLTALDLAQNSYRGMIELD-VLLTSWK 228 (477)
Q Consensus 174 -----------------------l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~ 228 (477)
+...++|+.|++++|.++ .+|..+ ..+++|++|++++|.+.+..+.. ..+..++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence 011245666777777665 344444 56788888888888877654321 1256677
Q ss_pred CCCEEeCCCCCCcccccc-CCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeE
Q 038739 229 NLEFLGLSLNRLSVLTKA-TSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGF 307 (477)
Q Consensus 229 ~L~~L~ls~n~i~~~~~~-~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L 307 (477)
+|++|++++|+++.++.. .....+++|++|++++|+++.+|..+..+++|++|++++|+++ .+|..+ .++|+.|
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~----~~~L~~L 436 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI----PQTLEVL 436 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTS----CTTCSEE
T ss_pred cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccchh----cCCceEE
Confidence 788888888876654321 1122466788888888888777777777777888888887776 333322 2466677
Q ss_pred EecCCcccccCCC-----CcccCCC-CCCCCC--CCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCC
Q 038739 308 NFSHNLLTGFDQH-----PVVLPGN-KGPLPV--PPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 377 (477)
Q Consensus 308 ~Ls~N~l~~~~~~-----~~~l~~n-~~~~~~--~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 377 (477)
++++|++++.... .+++++| ...+|. .+++|+.|++++|++++.+|..+..+++|+.|++++|++++..|
T Consensus 437 ~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 437 DVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 7777766655321 1245555 334443 36799999999999999999999999999999999999998776
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.5e-39 Score=324.46 Aligned_cols=345 Identities=25% Similarity=0.336 Sum_probs=298.2
Q ss_pred CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739 9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88 (477)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 88 (477)
++++++|+++++.+.. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 6789999999999984 55 48899999999999999997655 9999999999999999985544 99999999999
Q ss_pred CcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168 (477)
Q Consensus 89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 168 (477)
+++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|++++ .+.+. ..+..+++|++|++++|.+++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCC
Confidence 99999976533 8999999999999999984 44 588999999999974 44333 238899999999999999986
Q ss_pred cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC
Q 038739 169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS 248 (477)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~ 248 (477)
. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+... +..+++|+.|++++|.+.....
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~--- 260 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLAP--- 260 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECCSSCCCCCGG---
T ss_pred C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchh----hhcCCCCCEEECCCCccccchh---
Confidence 4 358889999999999999987655 7889999999999999987532 7789999999999998776554
Q ss_pred ccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCC
Q 038739 249 DTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK 328 (477)
Q Consensus 249 ~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~ 328 (477)
...+++|++|++++|.++.++. +..+++|+.|++++|++.+..+ +. .+++|+.|++++|++++..+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~L~~n~l~~~~~--------- 326 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--IS--NLKNLTYLTLYFNNISDISP--------- 326 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GG--GCTTCSEEECCSSCCSCCGG---------
T ss_pred hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hc--CCCCCCEEECcCCcCCCchh---------
Confidence 3467899999999999988876 8899999999999999997554 44 79999999999999987643
Q ss_pred CCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCc
Q 038739 329 GPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPL 399 (477)
Q Consensus 329 ~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 399 (477)
...+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| +..++ +|++|++++|++++
T Consensus 327 ---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 ---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT-RITQLGLNDQAWTN 389 (466)
T ss_dssp ---GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT-TCCEEECCCEEEEC
T ss_pred ---hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC-CCCEEeccCCcccC
Confidence 12467999999999999975 578999999999999999998877 88898 99999999999987
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-39 Score=327.57 Aligned_cols=349 Identities=24% Similarity=0.217 Sum_probs=159.9
Q ss_pred CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCC-------------CEEecccCcCcccCC
Q 038739 9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSL-------------KELDLSQNRFFGELP 75 (477)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~~ 75 (477)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++.+.+| ++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 46666666666666 4666666666666666666666666666666655543 666666666553 33
Q ss_pred cccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCC
Q 038739 76 ISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQ 155 (477)
Q Consensus 76 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 155 (477)
.. .++|++|++++|.+++ +|.. .++|++|++++|++++ ++.. .++|++|++++|.+++ +| .++++++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 21 2456666666666544 3332 2455555555555552 2211 1455555555555543 34 3555555
Q ss_pred CcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeC
Q 038739 156 LQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL 235 (477)
Q Consensus 156 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l 235 (477)
|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+.+... ..++|++|++
T Consensus 155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l 222 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD------LPLSLESIVA 222 (454)
T ss_dssp CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC------CCTTCCEEEC
T ss_pred CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC------CcCcccEEEC
Confidence 5555555555553 22221 355555555555553 23 35555555555555555544221 1134555555
Q ss_pred CCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCccc
Q 038739 236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLT 315 (477)
Q Consensus 236 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 315 (477)
++|.+..++. ...+++|++|++++|+++.+|.. +++|++|++++|++++ +|. ..++|+.|++++|+++
T Consensus 223 ~~n~l~~lp~---~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 223 GNNILEELPE---LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPE-----LPQSLTFLDVSENIFS 290 (454)
T ss_dssp CSSCCSSCCC---CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCS
T ss_pred cCCcCCcccc---cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCc-----ccCcCCEEECcCCccC
Confidence 5554443321 22344555555555555444432 2445555555555543 222 1234445555555444
Q ss_pred ccC--CC---CcccCCC-CCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccce
Q 038739 316 GFD--QH---PVVLPGN-KGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLV 389 (477)
Q Consensus 316 ~~~--~~---~~~l~~n-~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~ 389 (477)
+.. +. .+++++| ...++..+++|+.|++++|++++ +|.. +++|++|++++|+++ .+|. .++ +|++
T Consensus 291 ~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~-~L~~ 361 (454)
T 1jl5_A 291 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ-NLKQ 361 (454)
T ss_dssp EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT-TCCE
T ss_pred cccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh-hccE
Confidence 421 11 1133333 11223333456666666666664 4432 355666666666665 3444 233 5666
Q ss_pred eecCCCcCCc--ccCCCC
Q 038739 390 LDLQGNNLPL--SKGCES 405 (477)
Q Consensus 390 L~Ls~N~l~~--~~p~~~ 405 (477)
|++++|++++ .+|.+.
T Consensus 362 L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPESV 379 (454)
T ss_dssp EECCSSCCSSCCCCCTTC
T ss_pred EECCCCCCCcCCCChHHH
Confidence 6666666666 555443
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-39 Score=325.12 Aligned_cols=352 Identities=20% Similarity=0.157 Sum_probs=293.8
Q ss_pred CCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcc-cccccCCCCccEEEcc
Q 038739 36 LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGEL-PTSIRNLFSLEKLDLS 114 (477)
Q Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls 114 (477)
-+.++.+++.++. +|. + .++|++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|+++
T Consensus 12 ~~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 3567888888874 454 2 378999999999999888999999999999999999987555 5679999999999999
Q ss_pred CCcCcCCCCccccCCCCCCEEEccCCCCcccCCcc--ccCCCCCcEEECCCCcCCCcCCcC-CCCCCCCCEEEccCCccc
Q 038739 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHS--IGNFTQLQYLHLGSNNFSGDLLGP-IGNLRSLEAINVAKCNFS 191 (477)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~ 191 (477)
+|++++..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..+.. +..+++|++|++++|.++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99999888999999999999999999998755544 899999999999999999877765 889999999999999999
Q ss_pred cccchhhhcC--CCCCEEeCcCCcCccccchhh------hhcCCCCCCEEeCCCCCCccccccCCcc--CcCcccEEEcc
Q 038739 192 GQITSSLRNL--SQLTALDLAQNSYRGMIELDV------LLTSWKNLEFLGLSLNRLSVLTKATSDT--TSQKLKYIGLR 261 (477)
Q Consensus 192 ~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~------~~~~~~~L~~L~ls~n~i~~~~~~~~~~--~~~~L~~L~L~ 261 (477)
+..+..+..+ .+|+.|++++|.+.+..+... .+..+++|++|++++|.+.......... ...+|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 8888888766 789999999999987654321 1235688999999999765433222111 34689999999
Q ss_pred CCCCCCc-----------chhhh--cCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCC
Q 038739 262 SCNLTKF-----------PNFLQ--NQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK 328 (477)
Q Consensus 262 ~n~l~~~-----------p~~l~--~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~ 328 (477)
+|..... +..+. ..++|++|++++|++.+..|..+. .+++|+.|++++|++++..+..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~------ 319 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAF------ 319 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTT------
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHh------
Confidence 8865211 11122 246899999999999999999888 89999999999999998755432
Q ss_pred CCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCC
Q 038739 329 GPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCE 404 (477)
Q Consensus 329 ~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~ 404 (477)
..+++|+.|++++|.+++..|..++++++|++|||++|++++..|..|..++ +|++|++++|++++..+..
T Consensus 320 ----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 320 ----WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp ----TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTT
T ss_pred ----cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc-cccEEECCCCccccCCHhH
Confidence 3467999999999999988899999999999999999999998899999998 9999999999998754433
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.5e-39 Score=332.71 Aligned_cols=367 Identities=20% Similarity=0.191 Sum_probs=279.6
Q ss_pred CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739 9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88 (477)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 88 (477)
+...+++++++|.+++ +|..+. ++|++|++++|.+++..+.+|.++++|++|++++|++++..|..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 4556899999999994 666554 8999999999999988888999999999999999999988899999999999999
Q ss_pred CcCCCCCCcccccccCCCCccEEEccCCcCcC-CCCccccCCCCCCEEEccCCCCcccCCccccCCCCC--cEEECCCCc
Q 038739 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG-EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL--QYLHLGSNN 165 (477)
Q Consensus 89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~ 165 (477)
+++|+++ .+|.. .+++|++|++++|++++ .+|..++++++|++|++++|.+.+. .+..+++| ++|++++|.
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 9999996 56665 89999999999999986 3468999999999999999998763 34555555 999999999
Q ss_pred C--CCcCCcCCCC--------------------------CCCCCEEEccCCc----------------------------
Q 038739 166 F--SGDLLGPIGN--------------------------LRSLEAINVAKCN---------------------------- 189 (477)
Q Consensus 166 l--~~~~~~~l~~--------------------------l~~L~~L~l~~n~---------------------------- 189 (477)
+ ++..+..+.. +++|+.+++++|.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 8 6665555543 3456666666653
Q ss_pred cccc----cchhhhcCCCCCEEeCcCCcCccccchhhhh---cCC--------------------------CCCCEEeCC
Q 038739 190 FSGQ----ITSSLRNLSQLTALDLAQNSYRGMIELDVLL---TSW--------------------------KNLEFLGLS 236 (477)
Q Consensus 190 l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~---~~~--------------------------~~L~~L~ls 236 (477)
+.+. .+.. ...++|++|++++|.+.+..+...+. ..+ .+|+.|+++
T Consensus 261 l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 261 TTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp ECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred CcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 1110 0111 12347889999999887655433100 112 346777777
Q ss_pred CCCCccccccCCccCcCcccEEEccCCCCCC-cchhhhcCCCcCEEeccCCccccc--CCccCCcccCCCCCeEEecCCc
Q 038739 237 LNRLSVLTKATSDTTSQKLKYIGLRSCNLTK-FPNFLQNQHHLRFMDLSDNRIQGK--VPKWLLDPNMQNLNGFNFSHNL 313 (477)
Q Consensus 237 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~-~p~~l~~~~~L~~L~Ls~n~i~~~--~p~~~~~~~l~~L~~L~Ls~N~ 313 (477)
+|.+.... ....+++|++|++++|.++. +|..+..+++|++|++++|++++. +|..+. .+++|+.|++++|+
T Consensus 340 ~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 340 DTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK--NMSSLETLDVSLNS 414 (562)
T ss_dssp SSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT--TCTTCCEEECTTSC
T ss_pred CCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc--CCCCCCEEECCCCc
Confidence 77543222 11356788999999998865 677788888999999999988863 234555 78889999999998
Q ss_pred ccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecC
Q 038739 314 LTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQ 393 (477)
Q Consensus 314 l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls 393 (477)
+++..+.. ....+++|+.|++++|++++.+|..+. ++|+.|||++|+++ .+|..+..++ +|++|+++
T Consensus 415 l~~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~-~L~~L~L~ 481 (562)
T 3a79_B 415 LNSHAYDR---------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQ-ALQELNVA 481 (562)
T ss_dssp CBSCCSSC---------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSC-CCSEEECC
T ss_pred CCCccChh---------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCC-CCCEEECC
Confidence 88733221 123467899999999999987776554 78999999999998 7888777888 99999999
Q ss_pred CCcCCcccCCC
Q 038739 394 GNNLPLSKGCE 404 (477)
Q Consensus 394 ~N~l~~~~p~~ 404 (477)
+|+++ .+|..
T Consensus 482 ~N~l~-~l~~~ 491 (562)
T 3a79_B 482 SNQLK-SVPDG 491 (562)
T ss_dssp SSCCC-CCCTT
T ss_pred CCCCC-CCCHH
Confidence 99998 56654
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-37 Score=325.77 Aligned_cols=385 Identities=20% Similarity=0.162 Sum_probs=258.6
Q ss_pred CCccCCCCCC---CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCccc
Q 038739 2 IPSSLGNLSK---LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISM 78 (477)
Q Consensus 2 lp~~l~~l~~---L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 78 (477)
+|.+...|.. -++.+-++-+++ .+|..+- +++++|||++|+|+++.+.+|.++++|++|+|++|++++..+.+|
T Consensus 20 ~p~~~~~c~~~~~~~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f 96 (635)
T 4g8a_A 20 IPESWEPCVEVVPNITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 96 (635)
T ss_dssp -----CCSEEEETTTEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred CCCCCCCccccCCCCEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh
Confidence 4544444322 245677777787 5665543 489999999999998888899999999999999999998888899
Q ss_pred CCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc-cCCccccCCCCCc
Q 038739 79 GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG-KVPHSIGNFTQLQ 157 (477)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~ 157 (477)
.++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+.. ..|..+..+++|+
T Consensus 97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 97 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred cCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence 999999999999999987777889999999999999999997777789999999999999999965 4678889999999
Q ss_pred EEECCCCcCCCcCCcCCCCCCCC----CEEEccCCccccccch------------------------h------------
Q 038739 158 YLHLGSNNFSGDLLGPIGNLRSL----EAINVAKCNFSGQITS------------------------S------------ 197 (477)
Q Consensus 158 ~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~------------------------~------------ 197 (477)
+|++++|.+++..+..+..+.++ ..++++.|.++...+. .
T Consensus 177 ~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l 256 (635)
T 4g8a_A 177 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 256 (635)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEE
T ss_pred hhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccc
Confidence 99999999988766665433222 2344444433211110 0
Q ss_pred -------------------------------------------------------------------hhcCCCCCEEeCc
Q 038739 198 -------------------------------------------------------------------LRNLSQLTALDLA 210 (477)
Q Consensus 198 -------------------------------------------------------------------l~~l~~L~~L~L~ 210 (477)
+.....++.|++.
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 336 (635)
T ss_dssp EEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcc
Confidence 1112223333333
Q ss_pred CCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCC---cchhhhcCCCcCEEeccCCc
Q 038739 211 QNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTK---FPNFLQNQHHLRFMDLSDNR 287 (477)
Q Consensus 211 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~---~p~~l~~~~~L~~L~Ls~n~ 287 (477)
+|.+..... ..++.|+.+++..|.+... .....+++|+.+++++|.+.. .+.....+.+|+.++++.|.
T Consensus 337 ~~~~~~~~~-----~~l~~L~~l~l~~n~~~~~---~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 337 NCKFGQFPT-----LKLKSLKRLTFTSNKGGNA---FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp SCEESSCCC-----CBCTTCCEEEEESCCSCCB---CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred cccccCcCc-----ccchhhhhcccccccCCCC---cccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence 333322111 1122233333333321111 111134455555555555521 23333444445555544444
Q ss_pred c-----------------------cccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecC
Q 038739 288 I-----------------------QGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLAS 344 (477)
Q Consensus 288 i-----------------------~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls 344 (477)
+ ....+..... .+++++.+++++|.+.+..+ ......+.++.|+++
T Consensus 409 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~-~l~~l~~l~ls~n~l~~~~~----------~~~~~~~~L~~L~Ls 477 (635)
T 4g8a_A 409 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFN----------GIFNGLSSLEVLKMA 477 (635)
T ss_dssp EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTT-TCTTCCEEECTTSCCEECCT----------TTTTTCTTCCEEECT
T ss_pred cccccccccccccccchhhhhccccccccccccc-cccccccccccccccccccc----------cccccchhhhhhhhh
Confidence 4 4333222111 44555555555555544332 223456789999999
Q ss_pred CCcCc-cCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCcccCCCCCCCC
Q 038739 345 NNSLT-GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSKGCESGEAP 409 (477)
Q Consensus 345 ~n~l~-~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~p~~~~~~~ 409 (477)
+|.+. +.+|..|..+++|++|||++|++++..|..|..++ +|++|+|++|+|++..|..+...+
T Consensus 478 ~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~ 542 (635)
T 4g8a_A 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLN 542 (635)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCBCCCGGGTTCT
T ss_pred hcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC-CCCEEECCCCcCCCCChhHHhCCC
Confidence 99854 45788899999999999999999999999999998 999999999999988776555443
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=315.62 Aligned_cols=320 Identities=21% Similarity=0.191 Sum_probs=203.3
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN 92 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 92 (477)
+.++.+++.++ .+|..+. +++++|+|++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46666666666 4444332 46677777777776666666667777777777777666666666666667777777666
Q ss_pred CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCc
Q 038739 93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLG 172 (477)
Q Consensus 93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 172 (477)
+++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 66554445566666666666666666655555566666666666666665555555555555555555555555544334
Q ss_pred CCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCc-cC
Q 038739 173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD-TT 251 (477)
Q Consensus 173 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~-~~ 251 (477)
.+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.. ....+.. ..
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~--------------------------~l~~L~~L~l~~~~~--~~~~~~~~~~ 222 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFK--------------------------RLYRLKVLEISHWPY--LDTMTPNCLY 222 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSC--------------------------SCTTCCEEEEECCTT--CCEECTTTTT
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcc--------------------------cCcccceeeCCCCcc--ccccCccccc
Confidence 444455555555555554444444444 445555555554421 1111111 12
Q ss_pred cCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCC
Q 038739 252 SQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGP 330 (477)
Q Consensus 252 ~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~ 330 (477)
..+|++|++++|.++.+| ..+..+++|+.|++++|++++..+..+. .+++|+.|++++|++++..+..+
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~-------- 292 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH--ELLRLQEIQLVGGQLAVVEPYAF-------- 292 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT--TCTTCCEEECCSSCCSEECTTTB--------
T ss_pred CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc--ccccCCEEECCCCccceECHHHh--------
Confidence 337888888888888887 4678888999999999998877777776 78888888888888877654332
Q ss_pred CCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCccc
Q 038739 331 LPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 375 (477)
Q Consensus 331 ~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 375 (477)
..+++|+.|++++|++++..+..|..+++|+.|+|++|.+...
T Consensus 293 --~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 293 --RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp --TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred --cCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 2356677777777777766666677777888888888877643
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.5e-37 Score=312.86 Aligned_cols=330 Identities=23% Similarity=0.320 Sum_probs=284.5
Q ss_pred cCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739 5 SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL 84 (477)
Q Consensus 5 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 84 (477)
.+..+++|++|++++|.+++..+ +.++++|++|++++|.+++..+ +.++++|++|++++|.+++. +. +.++++|
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 136 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNL 136 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTC
T ss_pred chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCC
Confidence 47789999999999999996654 9999999999999999997655 99999999999999999854 33 8999999
Q ss_pred CEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCC
Q 038739 85 KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN 164 (477)
Q Consensus 85 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 164 (477)
++|++++|.+.+. + .+..+++|++|+++ |.+.+. + .+.++++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 137 ~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 137 NRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 209 (466)
T ss_dssp SEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC
Confidence 9999999998653 3 58999999999997 455533 3 388999999999999998654 45889999999999999
Q ss_pred cCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccc
Q 038739 165 NFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLT 244 (477)
Q Consensus 165 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 244 (477)
.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+...+
T Consensus 210 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 210 QISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP----LSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCG
T ss_pred ccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh----hhcCCCCCEEECCCCccCccc
Confidence 9987654 77899999999999999853 468899999999999999988765 778999999999999887665
Q ss_pred ccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCccc
Q 038739 245 KATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVL 324 (477)
Q Consensus 245 ~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 324 (477)
. ...+++|++|++++|.++.++. +..+++|+.|++++|++++..| +. .+++|+.|++++|++++...
T Consensus 282 ~---~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~----- 348 (466)
T 1o6v_A 282 P---LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VS--SLTKLQRLFFYNNKVSDVSS----- 348 (466)
T ss_dssp G---GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GG--GCTTCCEEECCSSCCCCCGG-----
T ss_pred c---ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hc--cCccCCEeECCCCccCCchh-----
Confidence 4 3367899999999999988876 7899999999999999998766 44 79999999999999987521
Q ss_pred CCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCc
Q 038739 325 PGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 378 (477)
Q Consensus 325 ~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~ 378 (477)
...+++|+.|++++|++++..| +..+++|+.|++++|++++ +|.
T Consensus 349 -------l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~ 392 (466)
T 1o6v_A 349 -------LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APV 392 (466)
T ss_dssp -------GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCB
T ss_pred -------hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cch
Confidence 2346899999999999998877 8999999999999999996 443
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.5e-38 Score=314.42 Aligned_cols=361 Identities=24% Similarity=0.270 Sum_probs=271.1
Q ss_pred CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCC-------------CEEEcccccCCccccccCCCCCCCCEEeccc
Q 038739 1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSL-------------EELDLSANFLSSEWPISIGNLSSLKELDLSQ 67 (477)
Q Consensus 1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 67 (477)
+||++|+++++|++|++++|.+.+.+|..++++++| ++|++++|.+++. |. -.++|++|++++
T Consensus 25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~~ 100 (454)
T 1jl5_A 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE---LPPHLESLVASC 100 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS---CCTTCSEEECCS
T ss_pred hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC---CcCCCCEEEccC
Confidence 489999999999999999999999999999998864 9999999999863 43 247899999999
Q ss_pred CcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCC
Q 038739 68 NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVP 147 (477)
Q Consensus 68 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 147 (477)
|.+++ +|.. +++|++|++++|++++ ++.. .++|++|++++|++++ +| .++++++|++|++++|.+++ +|
T Consensus 101 n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp 169 (454)
T 1jl5_A 101 NSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LP 169 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CC
T ss_pred CcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cC
Confidence 99986 6653 4899999999999865 3322 2699999999999995 77 69999999999999999975 55
Q ss_pred ccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCC
Q 038739 148 HSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSW 227 (477)
Q Consensus 148 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 227 (477)
..+ ++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|.+.... . +..+
T Consensus 170 ~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~lp--~--~~~l 236 (454)
T 1jl5_A 170 DLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEELP--E--LQNL 236 (454)
T ss_dssp CCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSSCC--C--CTTC
T ss_pred CCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCccc--c--cCCC
Confidence 543 589999999999997 45 68999999999999999985 3432 358999999999998544 2 7789
Q ss_pred CCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeE
Q 038739 228 KNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGF 307 (477)
Q Consensus 228 ~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L 307 (477)
++|++|++++|++..++.. +++|++|++++|.++.+|.. +++|++|++++|++++. |. ..++|+.|
T Consensus 237 ~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l-~~-----~~~~L~~L 302 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL-SE-----LPPNLYYL 302 (454)
T ss_dssp TTCCEEECCSSCCSSCCSC-----CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE-SC-----CCTTCCEE
T ss_pred CCCCEEECCCCcCCccccc-----ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc-cC-----cCCcCCEE
Confidence 9999999999988765442 36899999999999888864 48899999999999863 22 22678888
Q ss_pred EecCCcccccCCC-----CcccCCC-CCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcc--cCCch
Q 038739 308 NFSHNLLTGFDQH-----PVVLPGN-KGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSG--LLPQC 379 (477)
Q Consensus 308 ~Ls~N~l~~~~~~-----~~~l~~n-~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~--~~p~~ 379 (477)
++++|++++.... .+++++| ...+|..+++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|..
T Consensus 303 ~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 303 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp ECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred ECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 8888888874321 2366666 4457778899999999999999 5676 57899999999999998 78888
Q ss_pred hhhc-------------ccccceeecCCCcCCc--ccCCCCCCC
Q 038739 380 LGNF-------------SDELLVLDLQGNNLPL--SKGCESGEA 408 (477)
Q Consensus 380 l~~l-------------~~~L~~L~Ls~N~l~~--~~p~~~~~~ 408 (477)
+..+ + +|++|++++|++++ .+|.+....
T Consensus 379 l~~L~~n~~~~~i~~~~~-~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 379 VEDLRMNSHLAEVPELPQ-NLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp CCEEECCC------------------------------------
T ss_pred HHhhhhcccccccccccC-cCCEEECCCCcCCccccchhhHhhe
Confidence 8877 6 89999999999998 677655443
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.9e-38 Score=313.82 Aligned_cols=346 Identities=19% Similarity=0.169 Sum_probs=248.1
Q ss_pred ccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCC
Q 038739 4 SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83 (477)
Q Consensus 4 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 83 (477)
.+++++++|++|++++|.+++. | .+..+++|++|++++|++++. | ++.+++|++|++++|++++. + ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 4567789999999999999964 5 689999999999999999875 3 88999999999999999864 3 889999
Q ss_pred CCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCC
Q 038739 84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGS 163 (477)
Q Consensus 84 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 163 (477)
|++|++++|++++. + ++.+++|++|++++|++++. + ++.+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 99999999999763 3 88999999999999999863 3 788999999999999665655 478889999999999
Q ss_pred CcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccc
Q 038739 164 NNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL 243 (477)
Q Consensus 164 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 243 (477)
|.+++. + +..+++|+.|++++|.+++. .+..+++|+.|++++|++.+. + +..+++|+.|++++|+++..
T Consensus 180 n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p----~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 180 NKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D----VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSCC
T ss_pred Ccccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C----ccccCCCCEEEeeCCcCCCc
Confidence 999874 3 78889999999999999865 378899999999999999884 3 67789999999999987765
Q ss_pred cccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcc
Q 038739 244 TKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVV 323 (477)
Q Consensus 244 ~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 323 (477)
+ ...+++|+.|++++|.+ +.|++++|++.+.+|. . .+++|+.|++++|...+..+...
T Consensus 249 ~----~~~l~~L~~L~l~~n~L-------------~~L~l~~n~~~~~~~~--~--~l~~L~~L~Ls~n~~l~~l~~~~- 306 (457)
T 3bz5_A 249 D----VSTLSKLTTLHCIQTDL-------------LEIDLTHNTQLIYFQA--E--GCRKIKELDVTHNTQLYLLDCQA- 306 (457)
T ss_dssp C----CTTCTTCCEEECTTCCC-------------SCCCCTTCTTCCEEEC--T--TCTTCCCCCCTTCTTCCEEECTT-
T ss_pred C----HHHCCCCCEEeccCCCC-------------CEEECCCCccCCcccc--c--ccccCCEEECCCCcccceeccCC-
Confidence 4 12455677776666543 3333333333333331 1 33444444444443332221100
Q ss_pred cCCCCCCC-CCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchh-------------hhcccccce
Q 038739 324 LPGNKGPL-PVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCL-------------GNFSDELLV 389 (477)
Q Consensus 324 l~~n~~~~-~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l-------------~~l~~~L~~ 389 (477)
.....+ ....++|+.|++++|++++. + ++++++|+.||+++|++++. |. + ..+. .|..
T Consensus 307 --~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-~~-L~~L~l~~n~l~g~~~~~-~l~~ 378 (457)
T 3bz5_A 307 --AGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-SS-VGKIPALNNNFEAEGQTI-TMPK 378 (457)
T ss_dssp --CCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-TT-GGGSSGGGTSEEEEEEEE-ECCC
T ss_pred --CcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc-cc-cccccccCCcEEecceee-ecCc
Confidence 000000 01124555666666666652 2 55566666666666666542 11 1 2334 6888
Q ss_pred eecCCCcCCcccCCCCC
Q 038739 390 LDLQGNNLPLSKGCESG 406 (477)
Q Consensus 390 L~Ls~N~l~~~~p~~~~ 406 (477)
+++++|+++|.+|....
T Consensus 379 l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 379 ETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp BCCBTTBEEEECCTTCB
T ss_pred cccccCcEEEEcChhHh
Confidence 99999999999997653
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=313.14 Aligned_cols=309 Identities=22% Similarity=0.249 Sum_probs=273.0
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL 81 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 81 (477)
||..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|++++|+++...+..|.++
T Consensus 26 ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 26 VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 566664 589999999999998888899999999999999999999889999999999999999999997666778999
Q ss_pred CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEEC
Q 038739 82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHL 161 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 161 (477)
++|++|++++|++.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 99999999999998888889999999999999999999888889999999999999999998877778999999999999
Q ss_pred CCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCc
Q 038739 162 GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241 (477)
Q Consensus 162 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~ 241 (477)
++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.+.+..... +..+++|+.|++++|.+.
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--VRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH--HTTCTTCCEEECCSSCCC
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH--hcCccccCeeECCCCcCC
Confidence 999999888888999999999999999888777777777779999999999998766544 788999999999999877
Q ss_pred cccccCCccCcCcccEEEccCCCCCCc-chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCccccc
Q 038739 242 VLTKATSDTTSQKLKYIGLRSCNLTKF-PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGF 317 (477)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~L~~n~l~~~-p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~ 317 (477)
.++...+ ..+++|++|++++|.++.+ |..+..+++|++|++++|++++..+..+. .+++|+.|++++|.++..
T Consensus 262 ~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 262 TIEGSML-HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH--SVGNLETLILDSNPLACD 335 (477)
T ss_dssp EECTTSC-TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS--CGGGCCEEECCSSCEECS
T ss_pred ccChhhc-cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC--CCcccCEEEccCCCccCc
Confidence 6554332 2567899999999999766 57788889999999999999876666666 788899999999888753
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.8e-36 Score=295.01 Aligned_cols=312 Identities=21% Similarity=0.172 Sum_probs=199.4
Q ss_pred CCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEE
Q 038739 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLD 112 (477)
Q Consensus 33 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 112 (477)
++++++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 35566666666666544444455566666666666666555555566666666666666666555555556666666666
Q ss_pred ccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739 113 LSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG 192 (477)
Q Consensus 113 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 192 (477)
+++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~------------------- 181 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D------------------- 181 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---C-------------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---c-------------------
Confidence 666665533333345555555555555555544444455555555555555555432 1
Q ss_pred ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhh
Q 038739 193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL 272 (477)
Q Consensus 193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l 272 (477)
+..+++|+.|++++|.+.+. ...++|+.|++++|.+...+.. ..++|++|++++|.++.. .++
T Consensus 182 -----~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~-~~l 244 (390)
T 3o6n_A 182 -----LSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRGP----VNVELTILKLQHNNLTDT-AWL 244 (390)
T ss_dssp -----GGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEEECC----CCSSCCEEECCSSCCCCC-GGG
T ss_pred -----cccccccceeeccccccccc-------CCCCcceEEECCCCeeeecccc----ccccccEEECCCCCCccc-HHH
Confidence 33344555555555554432 1224566666666655444321 235677777777777665 357
Q ss_pred hcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCC
Q 038739 273 QNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEI 352 (477)
Q Consensus 273 ~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~ 352 (477)
..+++|++|++++|++++..|..+. .+++|+.|++++|++++.... ...+++|+.|++++|+++ .+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~-----------~~~l~~L~~L~L~~n~l~-~~ 310 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALNLY-----------GQPIPTLKVLDLSHNHLL-HV 310 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECCSSCCCEEECS-----------SSCCTTCCEEECCSSCCC-CC
T ss_pred cCCCCccEEECCCCcCCCcChhHcc--ccccCCEEECCCCcCcccCcc-----------cCCCCCCCEEECCCCcce-ec
Confidence 7788888888888888877777776 788888888888888765321 134567888888888888 57
Q ss_pred ChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCCccc
Q 038739 353 PSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLPLSK 401 (477)
Q Consensus 353 p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 401 (477)
|..+..+++|+.|++++|++++. | +..++ +|++|++++|++.+..
T Consensus 311 ~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~-~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 311 ERNQPQFDRLENLYLDHNSIVTL-K--LSTHH-TLKNLTLSHNDWDCNS 355 (390)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCC-C--CCTTC-CCSEEECCSSCEEHHH
T ss_pred CccccccCcCCEEECCCCcccee-C--chhhc-cCCEEEcCCCCccchh
Confidence 77889999999999999999854 4 56777 9999999999997653
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2e-35 Score=296.98 Aligned_cols=321 Identities=17% Similarity=0.162 Sum_probs=265.9
Q ss_pred cCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739 5 SLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL 84 (477)
Q Consensus 5 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 84 (477)
.++++++|++|++++|.+++. | ++.+++|++|++++|++++. + ++++++|++|++++|++++ ++ ++.+++|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L 129 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL 129 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence 688999999999999999964 4 89999999999999999975 3 8999999999999999986 44 8999999
Q ss_pred CEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCC
Q 038739 85 KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN 164 (477)
Q Consensus 85 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 164 (477)
++|++++|++++. .++.+++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|
T Consensus 130 ~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 130 TYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTN 201 (457)
T ss_dssp CEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSS
T ss_pred CEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCC
Confidence 9999999999774 3889999999999999766555 47889999999999999977 44 889999999999999
Q ss_pred cCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccc-
Q 038739 165 NFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL- 243 (477)
Q Consensus 165 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~- 243 (477)
.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|.+.+.. ...+++|+.|++++|.+..+
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-----~~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-----VSTLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-----CTTCTTCCEEECTTCCCSCCC
T ss_pred cCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-----HHHCCCCCEEeccCCCCCEEE
Confidence 99875 48889999999999999997 45 889999999999999999865 34566666666665544432
Q ss_pred -------cccCCccCcCcccEEEccCCCC-CCcch--------hhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeE
Q 038739 244 -------TKATSDTTSQKLKYIGLRSCNL-TKFPN--------FLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGF 307 (477)
Q Consensus 244 -------~~~~~~~~~~~L~~L~L~~n~l-~~~p~--------~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L 307 (477)
+..+ ...+++|+.|++++|.. +.+|. .+..+++|++|++++|++++. + +. .+++|+.|
T Consensus 271 l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~--~l~~L~~L 344 (457)
T 3bz5_A 271 LTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VS--HNTKLKSL 344 (457)
T ss_dssp CTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CT--TCTTCSEE
T ss_pred CCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cc--cCCcCcEE
Confidence 2222 22567899999999864 33331 256678999999999999974 3 55 78999999
Q ss_pred EecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhh
Q 038739 308 NFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGN 382 (477)
Q Consensus 308 ~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~ 382 (477)
++++|+++++ +.+..+++++|.++|. +.+..|+.+++++|+++|.+|..+..
T Consensus 345 ~l~~N~l~~l------------------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 345 SCVNAHIQDF------------------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp ECCSSCCCBC------------------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ECCCCCCCCc------------------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 9999998863 4577888999999876 46778999999999999999976543
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-35 Score=287.31 Aligned_cols=307 Identities=21% Similarity=0.291 Sum_probs=207.8
Q ss_pred ccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739 30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE 109 (477)
Q Consensus 30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 109 (477)
+..+++|++|++++|.+... + .+..+++|++|++++|.+++. +. +..+++|++|++++|.++.. +.+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 44556666666666666533 2 356666666666666666532 22 66666677777766666442 3466666777
Q ss_pred EEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739 110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN 189 (477)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 189 (477)
+|++++|.+++ ++. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 77777776663 332 6666677777777665444333 36667777777777777664332 5667777777777777
Q ss_pred cccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc
Q 038739 190 FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP 269 (477)
Q Consensus 190 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p 269 (477)
+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+...+. ...+++|++|++++|.++.++
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~ 259 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN 259 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCCh
Confidence 764332 6677777777777777766544 5567777777777776665544 335667888888888887774
Q ss_pred hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCc
Q 038739 270 NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLT 349 (477)
Q Consensus 270 ~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~ 349 (477)
.+..+++|++|++++|++++. + .+. .+++|+.|++++|++++
T Consensus 260 -~~~~l~~L~~L~l~~n~l~~~-~-~~~--~l~~L~~L~L~~n~l~~--------------------------------- 301 (347)
T 4fmz_A 260 -AVKDLTKLKMLNVGSNQISDI-S-VLN--NLSQLNSLFLNNNQLGN--------------------------------- 301 (347)
T ss_dssp -GGTTCTTCCEEECCSSCCCCC-G-GGG--GCTTCSEEECCSSCCCG---------------------------------
T ss_pred -hHhcCCCcCEEEccCCccCCC-h-hhc--CCCCCCEEECcCCcCCC---------------------------------
Confidence 577888999999999988854 3 344 67888888887766553
Q ss_pred cCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcCC
Q 038739 350 GEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNLP 398 (477)
Q Consensus 350 ~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 398 (477)
..|..++.+++|++|++++|++++..| +..++ +|++|++++|+++
T Consensus 302 -~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 -EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS-KMDSADFANQVIK 346 (347)
T ss_dssp -GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT-TCSEESSSCC---
T ss_pred -cChhHhhccccCCEEEccCCccccccC--hhhhh-ccceeehhhhccc
Confidence 456778888999999999999987666 77787 8999999999874
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4e-35 Score=285.28 Aligned_cols=307 Identities=21% Similarity=0.316 Sum_probs=259.8
Q ss_pred CCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCC
Q 038739 6 LGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLK 85 (477)
Q Consensus 6 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 85 (477)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.++. + ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 3468899999999999984 44 48899999999999999986544 8999999999999999974 3 3689999999
Q ss_pred EEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCc
Q 038739 86 VLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN 165 (477)
Q Consensus 86 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 165 (477)
+|++++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 999999999754 33 8899999999999997664444 58899999999999999865543 8899999999999999
Q ss_pred CCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccc
Q 038739 166 FSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTK 245 (477)
Q Consensus 166 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~ 245 (477)
+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+...+
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~- 259 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDIN- 259 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCG-
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCCh-
Confidence 986433 7889999999999999986544 8899999999999999987665 778999999999999877653
Q ss_pred cCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccC
Q 038739 246 ATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLP 325 (477)
Q Consensus 246 ~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 325 (477)
....+++|++|++++|.++.++ .+..+++|++|++++|++++..|..+. .+++|+.|++++|++++.
T Consensus 260 --~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~-------- 326 (347)
T 4fmz_A 260 --AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIG--GLTNLTTLFLSQNHITDI-------- 326 (347)
T ss_dssp --GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHH--TCTTCSEEECCSSSCCCC--------
T ss_pred --hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhh--ccccCCEEEccCCccccc--------
Confidence 2336789999999999998885 588999999999999999988888777 788999999988877642
Q ss_pred CCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCc
Q 038739 326 GNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLS 373 (477)
Q Consensus 326 ~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~ 373 (477)
.| +..+++|++||+++|.++
T Consensus 327 --------------------------~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 327 --------------------------RP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp --------------------------GG--GGGCTTCSEESSSCC---
T ss_pred --------------------------cC--hhhhhccceeehhhhccc
Confidence 23 788999999999999986
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.3e-36 Score=295.22 Aligned_cols=312 Identities=19% Similarity=0.169 Sum_probs=246.5
Q ss_pred CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739 8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87 (477)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 87 (477)
.++++++|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46899999999999986666668999999999999999998888899999999999999999998888889999999999
Q ss_pred eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739 88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167 (477)
Q Consensus 88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 167 (477)
++++|+++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999765555679999999999999999988888899999999999999999764 3567789999999999887
Q ss_pred CcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccC
Q 038739 168 GDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT 247 (477)
Q Consensus 168 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~ 247 (477)
+ +...++|++|++++|.++.. +. ...++|+.|++++|.+.+.. .+..+++|+.|++++|.+.......
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDTA----WLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCEEESGG
T ss_pred c-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCcccH----HHcCCCCccEEECCCCcCCCcChhH
Confidence 4 23346899999999988754 32 23468888888888887652 2667788888888888665442221
Q ss_pred CccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCC
Q 038739 248 SDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGN 327 (477)
Q Consensus 248 ~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n 327 (477)
. ..+++|++|++++|.++.+|..+..+++|++|++++|+++ .+|..+. .+++|+.|++++|+++..
T Consensus 268 ~-~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~--~l~~L~~L~L~~N~i~~~---------- 333 (390)
T 3o6n_A 268 F-VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP--QFDRLENLYLDHNSIVTL---------- 333 (390)
T ss_dssp G-TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH--HHTTCSEEECCSSCCCCC----------
T ss_pred c-cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcccc--ccCcCCEEECCCCcccee----------
Confidence 1 2456677777777777766665666677777777777776 3444444 566677777766665532
Q ss_pred CCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCccc
Q 038739 328 KGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGL 375 (477)
Q Consensus 328 ~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ 375 (477)
+ +..+++|+.|++++|++++.
T Consensus 334 -------------------------~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 334 -------------------------K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp -------------------------C--CCTTCCCSEEECCSSCEEHH
T ss_pred -------------------------C--chhhccCCEEEcCCCCccch
Confidence 2 55678899999999999864
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-35 Score=306.27 Aligned_cols=311 Identities=20% Similarity=0.179 Sum_probs=190.2
Q ss_pred CCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEc
Q 038739 58 SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDL 137 (477)
Q Consensus 58 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 137 (477)
.+++.+++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34444444444444333333344444444444444444433344444444444444444444444444444444444444
Q ss_pred cCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccc
Q 038739 138 RSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGM 217 (477)
Q Consensus 138 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 217 (477)
++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++.. +..+++|+.|++++|.+.+.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc
Confidence 444444333333444445555555555554444444455555555555555554321 33455566666666655432
Q ss_pred cchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCC
Q 038739 218 IELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLL 297 (477)
Q Consensus 218 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~ 297 (477)
...++|+.|++++|.+..++... .++|+.|++++|.++.. .++..+++|+.|++++|.+++..|..+.
T Consensus 208 -------~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 208 -------AIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp -------ECCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred -------cCCchhheeeccCCccccccccc----CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 22345666666666555443322 24688888888887664 4677888889999998888888888777
Q ss_pred cccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCC
Q 038739 298 DPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLP 377 (477)
Q Consensus 298 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p 377 (477)
.+++|+.|++++|++++.... ...+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++. |
T Consensus 276 --~l~~L~~L~Ls~N~l~~l~~~-----------~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~ 340 (597)
T 3oja_B 276 --KMQRLERLYISNNRLVALNLY-----------GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K 340 (597)
T ss_dssp --TCSSCCEEECTTSCCCEEECS-----------SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred --CccCCCEEECCCCCCCCCCcc-----------cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C
Confidence 788889999998888875321 133678889999999988 6788899999999999999999855 3
Q ss_pred chhhhcccccceeecCCCcCCccc
Q 038739 378 QCLGNFSDELLVLDLQGNNLPLSK 401 (477)
Q Consensus 378 ~~l~~l~~~L~~L~Ls~N~l~~~~ 401 (477)
+..++ +|++|++++|++.+..
T Consensus 341 --~~~~~-~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 341 --LSTHH-TLKNLTLSHNDWDCNS 361 (597)
T ss_dssp --CCTTC-CCSEEECCSSCEEHHH
T ss_pred --hhhcC-CCCEEEeeCCCCCChh
Confidence 55677 8999999999997654
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.7e-35 Score=305.00 Aligned_cols=310 Identities=19% Similarity=0.120 Sum_probs=187.4
Q ss_pred CCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEE
Q 038739 33 LHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLD 112 (477)
Q Consensus 33 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 112 (477)
+.+++.|++++|.+....+..+..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 35566666666666554444455666666666666666655555666666666666666666655555566666666666
Q ss_pred ccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739 113 LSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG 192 (477)
Q Consensus 113 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 192 (477)
+++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++.. +..+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 6666666444444566666666666666666655556666666666666666665432 3445566666666666553
Q ss_pred ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCc-chh
Q 038739 193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKF-PNF 271 (477)
Q Consensus 193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~-p~~ 271 (477)
+...++|+.|++++|.+...... ..++|+.|++++|.+... .....+++|+.|++++|.++.+ |..
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred -----ccCCchhheeeccCCcccccccc-----cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHH
Confidence 22344566666666666544321 235666666666655432 1222455667777777766544 556
Q ss_pred hhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccC
Q 038739 272 LQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGE 351 (477)
Q Consensus 272 l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~ 351 (477)
+..+++|+.|+|++|++++ +|..+. .+++|+.|++++|.+++.+.. ...+++|+.|++++|.+++.
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~--~l~~L~~L~Ls~N~l~~i~~~-----------~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-LNLYGQ--PIPTLKVLDLSHNHLLHVERN-----------QPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-EECSSS--CCTTCCEEECCSSCCCCCGGG-----------HHHHTTCSEEECCSSCCCCC
T ss_pred hcCccCCCEEECCCCCCCC-CCcccc--cCCCCcEEECCCCCCCccCcc-----------cccCCCCCEEECCCCCCCCc
Confidence 6667777777777777764 343333 566777777777766643210 01245677777777777643
Q ss_pred CChhhhccCCCCeEeCCCCcCccc
Q 038739 352 IPSWICNLNILESLVLSHNNLSGL 375 (477)
Q Consensus 352 ~p~~~~~l~~L~~LdLs~N~l~~~ 375 (477)
| +..+++|+.|+|++|.+++.
T Consensus 340 -~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 340 -K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp -C--CCTTCCCSEEECCSSCEEHH
T ss_pred -C--hhhcCCCCEEEeeCCCCCCh
Confidence 2 56678899999999998865
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.4e-32 Score=265.30 Aligned_cols=293 Identities=23% Similarity=0.256 Sum_probs=153.1
Q ss_pred CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739 35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114 (477)
Q Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 114 (477)
++++++++++.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 34455555544442 232221 345555555555544444445555555555555555544444455555555555555
Q ss_pred CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC--cCCcCCCCCCCCCEEEccCCcccc
Q 038739 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG--DLLGPIGNLRSLEAINVAKCNFSG 192 (477)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~ 192 (477)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 55554 3333332 455555555555544444445555555555555555432 334444555555555555555542
Q ss_pred ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhh
Q 038739 193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL 272 (477)
Q Consensus 193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l 272 (477)
+|..+. ++|++|++++|.+.+..+.. +..+++|+.|++++|.+....... ...+++|++|++++|.++.+|..+
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~l 259 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAAS--LKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLVKVPGGL 259 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGG--GTTCTTCCEEECCSSCCCEECTTT-GGGSTTCCEEECCSSCCSSCCTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCceeChhh-ccCCCCCCEEECCCCcCccCChhh
Confidence 222221 45666666666655544333 555556666666665444332211 113456777777777777777777
Q ss_pred hcCCCcCEEeccCCcccccCCccCCcc----cCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcC
Q 038739 273 QNQHHLRFMDLSDNRIQGKVPKWLLDP----NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSL 348 (477)
Q Consensus 273 ~~~~~L~~L~Ls~n~i~~~~p~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l 348 (477)
..+++|++|++++|++++..+..+... ..+.++.+++++|.+...
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~------------------------------- 308 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW------------------------------- 308 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG-------------------------------
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc-------------------------------
Confidence 777888888888888876555544310 124555555555554321
Q ss_pred ccCCChhhhccCCCCeEeCCCCc
Q 038739 349 TGEIPSWICNLNILESLVLSHNN 371 (477)
Q Consensus 349 ~~~~p~~~~~l~~L~~LdLs~N~ 371 (477)
+..|..|..+++++.++|++|+
T Consensus 309 -~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 309 -EIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -GSCGGGGTTCCCGGGEEC----
T ss_pred -ccCccccccccceeEEEecccC
Confidence 1446778888899999998885
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1e-32 Score=266.50 Aligned_cols=292 Identities=20% Similarity=0.205 Sum_probs=162.8
Q ss_pred CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739 35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114 (477)
Q Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 114 (477)
++++++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4555555555554 233333 2455555555555554445555555555666665555555445555555556666665
Q ss_pred CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC--cCCcCCCCCCCCCEEEccCCcccc
Q 038739 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG--DLLGPIGNLRSLEAINVAKCNFSG 192 (477)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~ 192 (477)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 55555 3443333 556666666665554444455556666666666665542 344445444 56666666666653
Q ss_pred ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhh
Q 038739 193 QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFL 272 (477)
Q Consensus 193 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l 272 (477)
+|..+. ++|++|++++|.+.+..+.. +..+++|+.|++++|.+........ ..+++|++|++++|.++.+|..+
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~--l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~lp~~l 260 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELED--LLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLSRVPAGL 260 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTS--STTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCCBCCTTG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCeecChhh
Confidence 332222 46666666666666554433 5556666666666665544332111 13456677777777777777777
Q ss_pred hcCCCcCEEeccCCcccccCCccCCcc----cCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcC
Q 038739 273 QNQHHLRFMDLSDNRIQGKVPKWLLDP----NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSL 348 (477)
Q Consensus 273 ~~~~~L~~L~Ls~n~i~~~~p~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l 348 (477)
..+++|++|++++|++++..+..+... ..+.|+.|++++|.+...
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~------------------------------- 309 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW------------------------------- 309 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG-------------------------------
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc-------------------------------
Confidence 777778888888777776555544310 123444555554443311
Q ss_pred ccCCChhhhccCCCCeEeCCCCc
Q 038739 349 TGEIPSWICNLNILESLVLSHNN 371 (477)
Q Consensus 349 ~~~~p~~~~~l~~L~~LdLs~N~ 371 (477)
+..|..|..+++|+.+++++|+
T Consensus 310 -~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 -EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -GSCGGGGTTBCCSTTEEC----
T ss_pred -ccCcccccccchhhhhhccccc
Confidence 3557778889999999999885
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.3e-36 Score=307.26 Aligned_cols=381 Identities=17% Similarity=0.118 Sum_probs=256.9
Q ss_pred CCCCEEEccCCCCCCCcccc-ccCCCCCCEEEcccccCCcc----ccccCCCCCCCCEEecccCcCcccCCccc-CCCC-
Q 038739 10 SKLLHLDLSLNELQGELPVS-VGNLHSLEELDLSANFLSSE----WPISIGNLSSLKELDLSQNRFFGELPISM-GNLG- 82 (477)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~- 82 (477)
++|++|++++|.++...... +..+++|++|++++|++++. ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57899999999988554433 78889999999999998853 45677888999999999999875433332 2344
Q ss_pred ---CCCEEeCcCCCCCC----cccccccCCCCccEEEccCCcCcCCCCccc-----cCCCCCCEEEccCCCCcccC----
Q 038739 83 ---SLKVLDLSQNGYFG----ELPTSIRNLFSLEKLDLSFNNFSGEFPWST-----GNFSSLKLLDLRSCGFWGKV---- 146 (477)
Q Consensus 83 ---~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~---- 146 (477)
+|++|++++|+++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999874 457888999999999999999875433322 23567999999999887643
Q ss_pred CccccCCCCCcEEECCCCcCCCcCCcCCC-----CCCCCCEEEccCCccccc----cchhhhcCCCCCEEeCcCCcCccc
Q 038739 147 PHSIGNFTQLQYLHLGSNNFSGDLLGPIG-----NLRSLEAINVAKCNFSGQ----ITSSLRNLSQLTALDLAQNSYRGM 217 (477)
Q Consensus 147 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~ 217 (477)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 45566788999999999988754333332 256899999999988763 466777888999999999987653
Q ss_pred cchh---hhhcCCCCCCEEeCCCCCCccccccCC---ccCcCcccEEEccCCCCCCc-chhhh-----cCCCcCEEeccC
Q 038739 218 IELD---VLLTSWKNLEFLGLSLNRLSVLTKATS---DTTSQKLKYIGLRSCNLTKF-PNFLQ-----NQHHLRFMDLSD 285 (477)
Q Consensus 218 ~~~~---~~~~~~~~L~~L~ls~n~i~~~~~~~~---~~~~~~L~~L~L~~n~l~~~-p~~l~-----~~~~L~~L~Ls~ 285 (477)
.... ..+..+++|++|++++|.++..+.... ...+++|++|++++|.++.. +..+. ..++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2111 123357888888888887665321111 11356788888888877432 12222 225788888888
Q ss_pred Cccccc----CCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCcc----CCChhhh
Q 038739 286 NRIQGK----VPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTG----EIPSWIC 357 (477)
Q Consensus 286 n~i~~~----~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~----~~p~~~~ 357 (477)
|.+++. ++..+. .+++|+.|++++|++++.....+ ...+....+.|+.|++++|.+++ .+|..+.
T Consensus 323 n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l-----~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 395 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLA--QNRFLLELQISNNRLEDAGVREL-----CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395 (461)
T ss_dssp SCCBGGGHHHHHHHHH--HCSSCCEEECCSSBCHHHHHHHH-----HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHh--hCCCccEEEccCCccccccHHHH-----HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence 887755 233333 56788888888887765321110 00001113467777777777775 5666677
Q ss_pred ccCCCCeEeCCCCcCcccCCchhh----h-cccccceeecCCCcCC
Q 038739 358 NLNILESLVLSHNNLSGLLPQCLG----N-FSDELLVLDLQGNNLP 398 (477)
Q Consensus 358 ~l~~L~~LdLs~N~l~~~~p~~l~----~-l~~~L~~L~Ls~N~l~ 398 (477)
.+++|++||+++|++++.-...+. . .+ .|+.|++.++.+.
T Consensus 396 ~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~-~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 396 ANHSLRELDLSNNCLGDAGILQLVESVRQPGC-LLEQLVLYDIYWS 440 (461)
T ss_dssp HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTC-CCCEEECTTCCCC
T ss_pred hCCCccEEECCCCCCCHHHHHHHHHHhccCCc-chhheeecccccC
Confidence 777777777777777654222221 1 12 4666666666543
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.1e-33 Score=268.86 Aligned_cols=247 Identities=28% Similarity=0.384 Sum_probs=125.5
Q ss_pred CCCEEEccCCCCCC--CccccccCCCCCCEEEccc-ccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739 11 KLLHLDLSLNELQG--ELPVSVGNLHSLEELDLSA-NFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87 (477)
Q Consensus 11 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 87 (477)
++++|++++|.+++ .+|..|.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+++..|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555554 4444555555555555552 44544445555555555555555555544455555555555555
Q ss_pred eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCC-CCCEEEccCCCCcccCCccccCCCCCcEEECCCCcC
Q 038739 88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFS-SLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF 166 (477)
Q Consensus 88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 166 (477)
++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 5555555444555555555555555555555544555554444 455555555555444444444444 55555555555
Q ss_pred CCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccccc
Q 038739 167 SGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKA 246 (477)
Q Consensus 167 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~ 246 (477)
++..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|.+.+..+.. +..++
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~------------------ 268 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG--LTQLK------------------ 268 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG--GGGCT------------------
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH--HhcCc------------------
Confidence 444444444555555555555554433332 444444555555555444443333 34444
Q ss_pred CCccCcCcccEEEccCCCCC-CcchhhhcCCCcCEEeccCCc
Q 038739 247 TSDTTSQKLKYIGLRSCNLT-KFPNFLQNQHHLRFMDLSDNR 287 (477)
Q Consensus 247 ~~~~~~~~L~~L~L~~n~l~-~~p~~l~~~~~L~~L~Ls~n~ 287 (477)
+|++|++++|.++ .+|.. ..+++|+.+++++|+
T Consensus 269 -------~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 269 -------FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp -------TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred -------CCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 4555555555553 44443 556667777777776
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.4e-31 Score=258.32 Aligned_cols=288 Identities=18% Similarity=0.176 Sum_probs=243.2
Q ss_pred CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739 11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS 90 (477)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 90 (477)
++++++++++.++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 7999999999998 5665554 689999999999998888789999999999999999998889999999999999999
Q ss_pred CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc--cCCccccCCCCCcEEECCCCcCCC
Q 038739 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG--KVPHSIGNFTQLQYLHLGSNNFSG 168 (477)
Q Consensus 91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~ 168 (477)
+|+++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99996 4555544 799999999999997777789999999999999999853 667889999999999999999985
Q ss_pred cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC
Q 038739 169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS 248 (477)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~ 248 (477)
++..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+..++..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~lp~~-- 258 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLVKVPGG-- 258 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSSCCSSCCTT--
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCCcCccCChh--
Confidence 444443 89999999999999888899999999999999999999877654 78899999999999988755442
Q ss_pred ccCcCcccEEEccCCCCCCcch-hhh------cCCCcCEEeccCCcccc--cCCccCCcccCCCCCeEEecCCc
Q 038739 249 DTTSQKLKYIGLRSCNLTKFPN-FLQ------NQHHLRFMDLSDNRIQG--KVPKWLLDPNMQNLNGFNFSHNL 313 (477)
Q Consensus 249 ~~~~~~L~~L~L~~n~l~~~p~-~l~------~~~~L~~L~Ls~n~i~~--~~p~~~~~~~l~~L~~L~Ls~N~ 313 (477)
...+++|++|++++|.++.++. .+. ..+.++.|++++|.+.. ..|..+. .+++++.+++++|+
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~--~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR--CVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT--TCCCGGGEEC----
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc--cccceeEEEecccC
Confidence 2367899999999999988863 332 24789999999999864 4455665 78999999999985
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=5.9e-36 Score=302.52 Aligned_cols=360 Identities=18% Similarity=0.153 Sum_probs=278.2
Q ss_pred CCCCEEEcccccCCcccccc-CCCCCCCCEEecccCcCcc----cCCcccCCCCCCCEEeCcCCCCCCcccccc-cCCC-
Q 038739 34 HSLEELDLSANFLSSEWPIS-IGNLSSLKELDLSQNRFFG----ELPISMGNLGSLKVLDLSQNGYFGELPTSI-RNLF- 106 (477)
Q Consensus 34 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~- 106 (477)
++|++|++++|+++...... +..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57899999999998654433 7889999999999999874 346678889999999999999876444333 3344
Q ss_pred ---CccEEEccCCcCcC----CCCccccCCCCCCEEEccCCCCcccCCcccc-----CCCCCcEEECCCCcCCCcC----
Q 038739 107 ---SLEKLDLSFNNFSG----EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG-----NFTQLQYLHLGSNNFSGDL---- 170 (477)
Q Consensus 107 ---~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~---- 170 (477)
+|++|++++|.++. .++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999984 4578889999999999999998655443332 3568999999999998643
Q ss_pred CcCCCCCCCCCEEEccCCccccccchhhh-----cCCCCCEEeCcCCcCcccc--chhhhhcCCCCCCEEeCCCCCCccc
Q 038739 171 LGPIGNLRSLEAINVAKCNFSGQITSSLR-----NLSQLTALDLAQNSYRGMI--ELDVLLTSWKNLEFLGLSLNRLSVL 243 (477)
Q Consensus 171 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~L~~L~ls~n~i~~~ 243 (477)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+.+.. .....+..+++|++|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 45566789999999999999865554443 3679999999999987642 1122367889999999999977654
Q ss_pred cccCC----ccCcCcccEEEccCCCCCC-----cchhhhcCCCcCEEeccCCcccccCCccCCc---ccCCCCCeEEecC
Q 038739 244 TKATS----DTTSQKLKYIGLRSCNLTK-----FPNFLQNQHHLRFMDLSDNRIQGKVPKWLLD---PNMQNLNGFNFSH 311 (477)
Q Consensus 244 ~~~~~----~~~~~~L~~L~L~~n~l~~-----~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~---~~l~~L~~L~Ls~ 311 (477)
+.... ...+++|++|++++|.++. ++..+..+++|++|++++|++.+..+..+.. ...++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 32111 1136799999999999976 6788888999999999999998654443321 0336999999999
Q ss_pred CcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhc-----cCCCCeEeCCCCcCcc----cCCchhhh
Q 038739 312 NLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICN-----LNILESLVLSHNNLSG----LLPQCLGN 382 (477)
Q Consensus 312 N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~-----l~~L~~LdLs~N~l~~----~~p~~l~~ 382 (477)
|.+++.....+ .......++|+.|++++|.+++..+..++. .++|++|+|++|++++ .+|..+..
T Consensus 323 n~l~~~~~~~l------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 323 CSFTAACCSHF------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp SCCBGGGHHHH------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHH------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 99886421100 000012478999999999999876666654 6799999999999997 78888989
Q ss_pred cccccceeecCCCcCCcc
Q 038739 383 FSDELLVLDLQGNNLPLS 400 (477)
Q Consensus 383 l~~~L~~L~Ls~N~l~~~ 400 (477)
++ +|++|++++|++++.
T Consensus 397 ~~-~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 397 NH-SLRELDLSNNCLGDA 413 (461)
T ss_dssp CC-CCCEEECCSSSCCHH
T ss_pred CC-CccEEECCCCCCCHH
Confidence 98 999999999999764
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.2e-31 Score=259.03 Aligned_cols=287 Identities=19% Similarity=0.196 Sum_probs=243.9
Q ss_pred CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739 11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS 90 (477)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 90 (477)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 7999999999998 6666553 799999999999998888899999999999999999998889999999999999999
Q ss_pred CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc--cCCccccCCCCCcEEECCCCcCCC
Q 038739 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG--KVPHSIGNFTQLQYLHLGSNNFSG 168 (477)
Q Consensus 91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~ 168 (477)
+|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99996 5555544 799999999999997767779999999999999999953 667778887 99999999999986
Q ss_pred cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCC
Q 038739 169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATS 248 (477)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~ 248 (477)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+..++..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~lp~~-- 259 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNNKLSRVPAG-- 259 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSSCCCBCCTT--
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCCcCeecChh--
Confidence 444443 78999999999999888889999999999999999999877655 78899999999999988755443
Q ss_pred ccCcCcccEEEccCCCCCCcc-hhhhc------CCCcCEEeccCCccc--ccCCccCCcccCCCCCeEEecCCc
Q 038739 249 DTTSQKLKYIGLRSCNLTKFP-NFLQN------QHHLRFMDLSDNRIQ--GKVPKWLLDPNMQNLNGFNFSHNL 313 (477)
Q Consensus 249 ~~~~~~L~~L~L~~n~l~~~p-~~l~~------~~~L~~L~Ls~n~i~--~~~p~~~~~~~l~~L~~L~Ls~N~ 313 (477)
...+++|++|++++|.++.++ ..+.. .+.|+.|++++|.+. +..|..+. .+++|+.+++++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~--~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR--CVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT--TBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc--ccchhhhhhccccc
Confidence 236789999999999998886 33433 467999999999987 56666676 79999999999885
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-32 Score=263.77 Aligned_cols=248 Identities=23% Similarity=0.370 Sum_probs=166.0
Q ss_pred CCCCEEEcccccCCc--cccccCCCCCCCCEEeccc-CcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccE
Q 038739 34 HSLEELDLSANFLSS--EWPISIGNLSSLKELDLSQ-NRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEK 110 (477)
Q Consensus 34 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 110 (477)
.++++|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..++++++|++|++++|++++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456667777776666 5666666667777777763 6666666666666666777777666666666666666666666
Q ss_pred EEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCC-CCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739 111 LDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFT-QLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN 189 (477)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 189 (477)
|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++..|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 66666666666666666666666666666666666666666665 666666666666655555555554 6666666666
Q ss_pred cccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC-Cc
Q 038739 190 FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT-KF 268 (477)
Q Consensus 190 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~-~~ 268 (477)
+++..+..+..+++|+.|++++|.+.+..+. ...+++|++|++++|.++ .+
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------------~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK----------------------------VGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG----------------------------CCCCTTCCEEECCSSCCEECC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc----------------------------ccccCCCCEEECcCCcccCcC
Confidence 6555555555555555555555554433221 123456777777777774 67
Q ss_pred chhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCc
Q 038739 269 PNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNL 313 (477)
Q Consensus 269 p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~ 313 (477)
|..+..+++|++|++++|++++.+|.. . .+++|+.+++++|+
T Consensus 261 p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~--~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 261 PQGLTQLKFLHSLNVSFNNLCGEIPQG-G--NLQRFDVSAYANNK 302 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCCS-T--TGGGSCGGGTCSSS
T ss_pred ChHHhcCcCCCEEECcCCcccccCCCC-c--cccccChHHhcCCC
Confidence 888888999999999999999888876 4 78888888888887
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=252.15 Aligned_cols=280 Identities=18% Similarity=0.163 Sum_probs=209.6
Q ss_pred CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739 8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87 (477)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 87 (477)
.|+.....+++++.++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.+++..+..|.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 4566677888888887 5565554 488888888888887666678888888888888888887777788888888888
Q ss_pred eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCC-ccccCCCCCCEEEccCC-CCcccCCccccCCCCCcEEECCCCc
Q 038739 88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSC-GFWGKVPHSIGNFTQLQYLHLGSNN 165 (477)
Q Consensus 88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l~~n~ 165 (477)
++++|++++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888888876555568888888888888888884333 36778888888888888 4655556678888888888888888
Q ss_pred CCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccc
Q 038739 166 FSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTK 245 (477)
Q Consensus 166 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~ 245 (477)
+++..+..+..+++|++|++++|.++......+..+++|+.|++++|.+.+..... +.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--l~-------------------- 243 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE--LS-------------------- 243 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc--cc--------------------
Confidence 88777778888888888888888876544444556778888888888776543211 00
Q ss_pred cCCccCcCcccEEEccCCCCC-----CcchhhhcCCCcCEEeccCCcccccCCcc-CCcccCCCCCeEEecCCccccc
Q 038739 246 ATSDTTSQKLKYIGLRSCNLT-----KFPNFLQNQHHLRFMDLSDNRIQGKVPKW-LLDPNMQNLNGFNFSHNLLTGF 317 (477)
Q Consensus 246 ~~~~~~~~~L~~L~L~~n~l~-----~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~-~~~~~l~~L~~L~Ls~N~l~~~ 317 (477)
.......++.++++++.++ .+|.++..+++|++|++++|+++ .+|.. +. .+++|++|++++|++++.
T Consensus 244 --~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~--~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 244 --TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFD--RLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTT--TCTTCCEEECCSSCBCCC
T ss_pred --cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHh--cCCCCCEEEeeCCCccCc
Confidence 0011234555666666553 46788899999999999999999 55555 35 789999999999988754
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.5e-30 Score=250.17 Aligned_cols=261 Identities=19% Similarity=0.177 Sum_probs=143.4
Q ss_pred CCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECC
Q 038739 83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLG 162 (477)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 162 (477)
+|++|++++|++++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44444444444443333344444455555555554444444444445555555555555443333334555555555555
Q ss_pred CCcCCCcCC-cCCCCCCCCCEEEccCC-ccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCC
Q 038739 163 SNNFSGDLL-GPIGNLRSLEAINVAKC-NFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240 (477)
Q Consensus 163 ~n~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i 240 (477)
+|.+++... ..+..+++|++|++++| .+++..+..+..+++|++|++++|.+.+..+.. +..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~-------------- 196 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS--LKS-------------- 196 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT--TTT--------------
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH--Hhc--------------
Confidence 555553222 24555555555655555 244333445555555555555555554433222 222
Q ss_pred ccccccCCccCcCcccEEEccCCCCCCcchh-hhcCCCcCEEeccCCcccccCCccCCc-ccCCCCCeEEecCCcccccC
Q 038739 241 SVLTKATSDTTSQKLKYIGLRSCNLTKFPNF-LQNQHHLRFMDLSDNRIQGKVPKWLLD-PNMQNLNGFNFSHNLLTGFD 318 (477)
Q Consensus 241 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~-l~~~~~L~~L~Ls~n~i~~~~p~~~~~-~~l~~L~~L~Ls~N~l~~~~ 318 (477)
+++|++|++++|.++.+|.. +..+++|++|++++|++++..+..+.. .....++.++++++.+++
T Consensus 197 -----------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~-- 263 (353)
T 2z80_A 197 -----------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD-- 263 (353)
T ss_dssp -----------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH--
T ss_pred -----------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC--
Confidence 23455555555555555433 344677777777777777554433320 134556666666665543
Q ss_pred CCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCch-hhhcccccceeecCCCcC
Q 038739 319 QHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQC-LGNFSDELLVLDLQGNNL 397 (477)
Q Consensus 319 ~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~~L~~L~Ls~N~l 397 (477)
+.+. .+|..+..+++|+.||+++|+++ .+|.. |..++ +|++|++++|++
T Consensus 264 ---------------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~-~L~~L~L~~N~~ 313 (353)
T 2z80_A 264 ---------------------------ESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT-SLQKIWLHTNPW 313 (353)
T ss_dssp ---------------------------HHHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCT-TCCEEECCSSCB
T ss_pred ---------------------------cchh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCC-CCCEEEeeCCCc
Confidence 2333 46778888888999999999888 55655 57787 888999999988
Q ss_pred CcccC
Q 038739 398 PLSKG 402 (477)
Q Consensus 398 ~~~~p 402 (477)
.+..|
T Consensus 314 ~~~~~ 318 (353)
T 2z80_A 314 DCSCP 318 (353)
T ss_dssp CCCHH
T ss_pred cCcCC
Confidence 77665
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.8e-29 Score=238.38 Aligned_cols=225 Identities=21% Similarity=0.192 Sum_probs=196.9
Q ss_pred CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739 12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91 (477)
Q Consensus 12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 91 (477)
-++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 368999999888 555444 47899999999999987778899999999999999999988888999999999999999
Q ss_pred CC-CCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739 92 NG-YFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL 170 (477)
Q Consensus 92 n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 170 (477)
|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 76666888999999999999999999877888999999999999999998777777899999999999999998777
Q ss_pred CcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCc
Q 038739 171 LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLS 241 (477)
Q Consensus 171 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~ 241 (477)
+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEEeccCCCcc
Confidence 777889999999999999999888889999999999999999998766544 778888999999888543
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.9e-29 Score=242.82 Aligned_cols=227 Identities=21% Similarity=0.278 Sum_probs=207.2
Q ss_pred CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739 9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88 (477)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 88 (477)
.+++++|++++|.++ .+|..+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478999999999998 77878989999999999999999 78888999999999999999998 7898999999999999
Q ss_pred CcCCCCCCcccccccC---------CCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEE
Q 038739 89 LSQNGYFGELPTSIRN---------LFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYL 159 (477)
Q Consensus 89 Ls~n~l~~~~~~~l~~---------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 159 (477)
+++|++.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 9999888888877654 999999999999999 888899999999999999999975 66679999999999
Q ss_pred ECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCC
Q 038739 160 HLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNR 239 (477)
Q Consensus 160 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~ 239 (477)
++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|.. +..+++++.+++..+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~--l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL--IAQLPANCIILVPPHL 312 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG--GGGSCTTCEEECCGGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH--HhhccCceEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999888876 8899999999998774
Q ss_pred Ccc
Q 038739 240 LSV 242 (477)
Q Consensus 240 i~~ 242 (477)
+..
T Consensus 313 ~~~ 315 (328)
T 4fcg_A 313 QAQ 315 (328)
T ss_dssp SCC
T ss_pred HHH
Confidence 433
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.6e-29 Score=241.34 Aligned_cols=279 Identities=22% Similarity=0.259 Sum_probs=213.6
Q ss_pred CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCccc--CCcccCCCCCCCEEeC
Q 038739 12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGE--LPISMGNLGSLKVLDL 89 (477)
Q Consensus 12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 89 (477)
-+.++.+++.++ .+|..+. ++|++|++++|+++...+..|.++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 367888888887 5565443 6899999999999866666688999999999999988732 3566677899999999
Q ss_pred cCCCCCCcccccccCCCCccEEEccCCcCcCCCC-ccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739 90 SQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168 (477)
Q Consensus 90 s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 168 (477)
++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 999885 466778889999999999999986554 578889999999999999988888888899999999999999876
Q ss_pred -cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccC
Q 038739 169 -DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT 247 (477)
Q Consensus 169 -~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~ 247 (477)
..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.......
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG--GTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh--ccCcccCCEeECCCCCCcccCHHH
Confidence 56778888999999999999998877888889999999999999988776654 777888888888888766544333
Q ss_pred CccCcCcccEEEccCCCCCCc---chhhhcCCCcCEEeccCCcccccCCccC
Q 038739 248 SDTTSQKLKYIGLRSCNLTKF---PNFLQNQHHLRFMDLSDNRIQGKVPKWL 296 (477)
Q Consensus 248 ~~~~~~~L~~L~L~~n~l~~~---p~~l~~~~~L~~L~Ls~n~i~~~~p~~~ 296 (477)
....+++|++|++++|.++.. ......+...+.+....+.+....|..+
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred HHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 322234778888888877422 1111222233334445555555555544
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=7.8e-30 Score=243.43 Aligned_cols=237 Identities=26% Similarity=0.282 Sum_probs=209.9
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCcc--ccccCCCCCCCCEEecccCcCcccCCcccC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSE--WPISIGNLSSLKELDLSQNRFFGELPISMG 79 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 79 (477)
+|..+. ++|++|++++|.++...+..|.++++|++|++++|+++.. .+..+..+++|++|++++|.+. .+|..+.
T Consensus 22 ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~ 98 (306)
T 2z66_A 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 98 (306)
T ss_dssp CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEE
T ss_pred CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcC
Confidence 565553 6899999999999966666689999999999999999844 2566778999999999999998 5677799
Q ss_pred CCCCCCEEeCcCCCCCCccc-ccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc-cCCccccCCCCCc
Q 038739 80 NLGSLKVLDLSQNGYFGELP-TSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG-KVPHSIGNFTQLQ 157 (477)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~ 157 (477)
.+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 99999999999999976654 578999999999999999998888899999999999999999976 5788899999999
Q ss_pred EEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCC-CCCCEEeCC
Q 038739 158 YLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSW-KNLEFLGLS 236 (477)
Q Consensus 158 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~ls 236 (477)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +..+ ++|++|+++
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE--LQHFPSSLAFLNLT 256 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS--CCCCCTTCCEEECT
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH--HHhhhccCCEEEcc
Confidence 9999999999888889999999999999999999887778999999999999999999877655 6677 499999999
Q ss_pred CCCCccc
Q 038739 237 LNRLSVL 243 (477)
Q Consensus 237 ~n~i~~~ 243 (477)
+|.+...
T Consensus 257 ~N~~~~~ 263 (306)
T 2z66_A 257 QNDFACT 263 (306)
T ss_dssp TCCEECS
T ss_pred CCCeecc
Confidence 9976543
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.1e-28 Score=248.46 Aligned_cols=248 Identities=21% Similarity=0.166 Sum_probs=211.5
Q ss_pred CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739 11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS 90 (477)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 90 (477)
..+.++.++..++ .+|..+. +++++|+|++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3578888888888 5665554 689999999999998888899999999999999999998888899999999999999
Q ss_pred CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCccc-CCccccCCCCCcEEECCCCcCCCc
Q 038739 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGK-VPHSIGNFTQLQYLHLGSNNFSGD 169 (477)
Q Consensus 91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~ 169 (477)
+|+++...+..|..+++|++|++++|.++...+..+..+++|++|++++|...+. .+..|..+++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9999877777899999999999999999977777889999999999998544344 445688999999999999999864
Q ss_pred CCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCc
Q 038739 170 LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD 249 (477)
Q Consensus 170 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~ 249 (477)
+ .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+.. +..+++|+.|++++|+++.++...+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~- 286 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA--FDGLASLVELNLAHNNLSSLPHDLF- 286 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCSCCCTTSS-
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH--hcCCCCCCEEECCCCcCCccChHHh-
Confidence 3 5788899999999999999888999999999999999999998877655 8889999999999998876554332
Q ss_pred cCcCcccEEEccCCCCC
Q 038739 250 TTSQKLKYIGLRSCNLT 266 (477)
Q Consensus 250 ~~~~~L~~L~L~~n~l~ 266 (477)
..+++|+.|++++|.+.
T Consensus 287 ~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEccCCCcC
Confidence 25678999999999873
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.8e-29 Score=234.40 Aligned_cols=217 Identities=22% Similarity=0.182 Sum_probs=198.5
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCc-CcccCCcccCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR-FFGELPISMGN 80 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 80 (477)
+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..+..
T Consensus 26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 45444 4689999999999998887889999999999999999998888899999999999999997 77666889999
Q ss_pred CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEE
Q 038739 81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLH 160 (477)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 160 (477)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 99999999999999888888999999999999999999977777799999999999999999877777899999999999
Q ss_pred CCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccch
Q 038739 161 LGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIEL 220 (477)
Q Consensus 161 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 220 (477)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+.
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 999999998899999999999999999999987778899999999999999998765543
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.1e-32 Score=283.06 Aligned_cols=377 Identities=16% Similarity=0.093 Sum_probs=197.8
Q ss_pred CCCCCCEEEccCCCCCCCccccccC-CCC-CCEEEccccc-CCc-cccccCCCCCCCCEEecccCcCccc----CCcccC
Q 038739 8 NLSKLLHLDLSLNELQGELPVSVGN-LHS-LEELDLSANF-LSS-EWPISIGNLSSLKELDLSQNRFFGE----LPISMG 79 (477)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~~-L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~ 79 (477)
++++|++|+|++|.+++..+..+.. +++ |++|++++|. ++. .++.....+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 3444555555554444333333333 222 5555554443 110 0111122445555555555544332 112223
Q ss_pred CCCCCCEEeCcCCCCCC----cccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCc---ccCCccccC
Q 038739 80 NLGSLKVLDLSQNGYFG----ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFW---GKVPHSIGN 152 (477)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~l~~ 152 (477)
.+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.+... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 44555555555555431 122233445555555555555542 3444455555555555432211 122234445
Q ss_pred CCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccc-hhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCC
Q 038739 153 FTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQIT-SSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLE 231 (477)
Q Consensus 153 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 231 (477)
+++|+.|+++++.. ..++..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.... .......+++|+
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~-l~~~~~~~~~L~ 345 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRG-LEVLAQYCKQLK 345 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHH-HHHHHHHCTTCC
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHH-HHHHHHhCCCCC
Confidence 55566666555322 2344455566667777777766553322 335666777777776 3222111 111234566777
Q ss_pred EEeCCC-----------CCCccccccCCccCcCcccEEEccCCCCCC-cchhhh-cCCCcCEEecc----CCccccc---
Q 038739 232 FLGLSL-----------NRLSVLTKATSDTTSQKLKYIGLRSCNLTK-FPNFLQ-NQHHLRFMDLS----DNRIQGK--- 291 (477)
Q Consensus 232 ~L~ls~-----------n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~-~p~~l~-~~~~L~~L~Ls----~n~i~~~--- 291 (477)
+|++++ +.++..+.......+++|++|+++.+.++. .+..+. .+++|+.|+++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 777772 323222111111235677777776666643 223333 36777777775 4555542
Q ss_pred --CCccCCcccCCCCCeEEecCCc--ccccCCCCcccCCCCCCCCCCCCccceeecCCCcCcc-CCChhhhccCCCCeEe
Q 038739 292 --VPKWLLDPNMQNLNGFNFSHNL--LTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTG-EIPSWICNLNILESLV 366 (477)
Q Consensus 292 --~p~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~-~~p~~~~~l~~L~~Ld 366 (477)
++..+. .+++|+.|++++|. +++.... .+....++|+.|++++|++++ .++..+.++++|++|+
T Consensus 426 ~~~~~~~~--~~~~L~~L~L~~~~~~l~~~~~~---------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 426 NGVRSLLI--GCKKLRRFAFYLRQGGLTDLGLS---------YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp HHHHHHHH--HCTTCCEEEEECCGGGCCHHHHH---------HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred HHHHHHHH--hCCCCCEEEEecCCCCccHHHHH---------HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 111222 46777777776432 3321100 111235789999999999987 4556668899999999
Q ss_pred CCCCcCccc-CCchhhhcccccceeecCCCcCCcc
Q 038739 367 LSHNNLSGL-LPQCLGNFSDELLVLDLQGNNLPLS 400 (477)
Q Consensus 367 Ls~N~l~~~-~p~~l~~l~~~L~~L~Ls~N~l~~~ 400 (477)
|++|.+++. ++..+..++ +|++|++++|+++..
T Consensus 495 l~~n~l~~~~~~~~~~~l~-~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 495 MRGCCFSERAIAAAVTKLP-SLRYLWVQGYRASMT 528 (592)
T ss_dssp EESCCCBHHHHHHHHHHCS-SCCEEEEESCBCCTT
T ss_pred ccCCCCcHHHHHHHHHhcC-ccCeeECcCCcCCHH
Confidence 999999865 344456787 999999999998765
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2e-28 Score=245.71 Aligned_cols=247 Identities=20% Similarity=0.197 Sum_probs=205.2
Q ss_pred CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739 11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS 90 (477)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 90 (477)
..+.++.++..++ .+|..+. +++++|+|++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3568888888887 5665554 688999999999998888889999999999999999987777889999999999999
Q ss_pred CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCC-CcccCCccccCCCCCcEEECCCCcCCCc
Q 038739 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCG-FWGKVPHSIGNFTQLQYLHLGSNNFSGD 169 (477)
Q Consensus 91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 169 (477)
+|+++...+..|..+++|++|++++|.++...+..+..+++|++|++++|. +....+..|.++++|++|++++|.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 999987766788899999999999999987777788899999999999854 433344578889999999999999884
Q ss_pred CCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCc
Q 038739 170 LLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD 249 (477)
Q Consensus 170 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~ 249 (477)
++ .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+.. +..+++|+.|++++|+++.++...+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~- 275 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA--FDNLQSLVEINLAHNNLTLLPHDLF- 275 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS--STTCTTCCEEECTTSCCCCCCTTTT-
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh--hcCCCCCCEEECCCCCCCccChhHh-
Confidence 34 4788889999999999998888888999999999999999998877655 7888999999999998876654332
Q ss_pred cCcCcccEEEccCCCC
Q 038739 250 TTSQKLKYIGLRSCNL 265 (477)
Q Consensus 250 ~~~~~L~~L~L~~n~l 265 (477)
..+++|+.|++++|.+
T Consensus 276 ~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPW 291 (440)
T ss_dssp SSCTTCCEEECCSSCE
T ss_pred ccccCCCEEEcCCCCc
Confidence 2467899999999887
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.9e-27 Score=246.08 Aligned_cols=268 Identities=22% Similarity=0.225 Sum_probs=171.2
Q ss_pred CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739 35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114 (477)
Q Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 114 (477)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 5777777777776 4454443 67777777777776 3444 45677777777777643 443 45667777777
Q ss_pred CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccccc
Q 038739 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQI 194 (477)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 194 (477)
+|.+++ +|. .+++|+.|++++|.++. +|.. +++|++|++++|.+++. +. .+++|+.|++++|.++
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~--- 174 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT--- 174 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS---
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC---
Confidence 776663 333 34566666666666543 3332 25556666666555532 21 1234455555555444
Q ss_pred chhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhc
Q 038739 195 TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQN 274 (477)
Q Consensus 195 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~ 274 (477)
+.. ..+++|+.|++++|.++.++.. +++|+.|++++|.++.+|..
T Consensus 175 ---------------------~l~------~~~~~L~~L~Ls~N~l~~l~~~-----~~~L~~L~L~~N~l~~l~~~--- 219 (622)
T 3g06_A 175 ---------------------SLP------MLPSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNRLTSLPAL--- 219 (622)
T ss_dssp ---------------------CCC------CCCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSSCCCC---
T ss_pred ---------------------CCc------ccCCCCcEEECCCCCCCCCCCc-----cchhhEEECcCCcccccCCC---
Confidence 322 1234555555555544433321 24677777777777766642
Q ss_pred CCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCCh
Q 038739 275 QHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPS 354 (477)
Q Consensus 275 ~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~ 354 (477)
+++|+.|++++|++++ +|. .+++|+.|++++|+++.+ |..+++|+.|++++|.++ .+|.
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp~-----~l~~L~~L~Ls~N~L~~l--------------p~~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LPV-----LPSELKELMVSGNRLTSL--------------PMLPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSCC--------------CCCCTTCCEEECCSSCCC-SCCG
T ss_pred CCCCCEEEccCCccCc-CCC-----CCCcCcEEECCCCCCCcC--------------CcccccCcEEeCCCCCCC-cCCH
Confidence 4678888888888774 441 567788888888877743 335677888888888888 7788
Q ss_pred hhhccCCCCeEeCCCCcCcccCCchhhhcc
Q 038739 355 WICNLNILESLVLSHNNLSGLLPQCLGNFS 384 (477)
Q Consensus 355 ~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 384 (477)
.+.++++|+.|+|++|.+++.+|..+..++
T Consensus 279 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp GGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred HHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999999999999999999998887765
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=9.9e-29 Score=237.78 Aligned_cols=212 Identities=27% Similarity=0.346 Sum_probs=198.4
Q ss_pred CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCC
Q 038739 1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGN 80 (477)
Q Consensus 1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 80 (477)
.+|+.+.++++|++|++++|.++ .+|..+.++++|++|++++|+++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 47888999999999999999999 88989999999999999999999 67888999999999999999888888887764
Q ss_pred ---------CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCcccc
Q 038739 81 ---------LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151 (477)
Q Consensus 81 ---------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 151 (477)
+++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 999999999999997 78889999999999999999999 5777899999999999999999999999999
Q ss_pred CCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcc
Q 038739 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG 216 (477)
Q Consensus 152 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 216 (477)
.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+..
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876543
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.1e-27 Score=239.16 Aligned_cols=247 Identities=21% Similarity=0.193 Sum_probs=196.5
Q ss_pred CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739 35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114 (477)
Q Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 114 (477)
..+.++.++..++. +|..+. +++++|++++|++++..+..|.++++|++|++++|++.+..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 35678888887774 554443 678899999998888778888888999999999998887777888888899999999
Q ss_pred CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCC-cCCCcCCcCCCCCCCCCEEEccCCccccc
Q 038739 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN-NFSGDLLGPIGNLRSLEAINVAKCNFSGQ 193 (477)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 193 (477)
+|.+++..+..+..+++|++|++++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99888666667888889999999998887766678888889999999884 45544455688888899999999888754
Q ss_pred cchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc-hhh
Q 038739 194 ITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFL 272 (477)
Q Consensus 194 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l 272 (477)
+ .+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+..+....+ ..+++|+.|++++|.++.+| ..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGS--FHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGG--GTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCTTSS
T ss_pred -c-cccccccccEEECcCCcCcccCccc--ccCccCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCCccChHHh
Confidence 3 4778888999999999888877655 7888899999999887766544332 25678899999999887776 456
Q ss_pred hcCCCcCEEeccCCccc
Q 038739 273 QNQHHLRFMDLSDNRIQ 289 (477)
Q Consensus 273 ~~~~~L~~L~Ls~n~i~ 289 (477)
..+++|+.|++++|.+.
T Consensus 287 ~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEccCCCcC
Confidence 77888999999988776
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3.3e-27 Score=244.26 Aligned_cols=262 Identities=22% Similarity=0.229 Sum_probs=183.7
Q ss_pred CCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 038739 59 SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLR 138 (477)
Q Consensus 59 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (477)
+++.|++++|.++ .+|..+. ++|++|++++|+++ .+|. .+++|++|++++|+++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 3566666666655 4444443 55666666666554 2333 3445555555555554 2332 33444555554
Q ss_pred CCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcccc
Q 038739 139 SCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMI 218 (477)
Q Consensus 139 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 218 (477)
+ |.+++. +. .+++|+.|++++|++++ +|. .+++|++|++++|.+.+..
T Consensus 110 ~------------------------N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~ 157 (622)
T 3g06_A 110 S------------------------NPLTHL-PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLP 157 (622)
T ss_dssp S------------------------CCCCCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred C------------------------CcCCCC-CC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCcC
Confidence 4 444432 11 23455555555555553 222 2367777777777776543
Q ss_pred chhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCc
Q 038739 219 ELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLD 298 (477)
Q Consensus 219 ~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~ 298 (477)
. .+++|+.|++++|.++.++ ..+++|+.|++++|.++.+|.. +++|+.|++++|.++ .+|.
T Consensus 158 ~------~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~---- 218 (622)
T 3g06_A 158 A------LPSELCKLWAYNNQLTSLP-----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA---- 218 (622)
T ss_dssp C------CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC----
T ss_pred C------ccCCCCEEECCCCCCCCCc-----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC----
Confidence 2 3468999999999887765 2457899999999999988863 589999999999998 4553
Q ss_pred ccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCc
Q 038739 299 PNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 378 (477)
Q Consensus 299 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~ 378 (477)
.+++|+.|++++|+++++ |..+++|+.|++++|.++ .+|. .+++|+.|+|++|+++ .+|.
T Consensus 219 -~~~~L~~L~Ls~N~L~~l--------------p~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 219 -LPSGLKELIVSGNRLTSL--------------PVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp -CCTTCCEEECCSSCCSCC--------------CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred -CCCCCCEEEccCCccCcC--------------CCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCH
Confidence 358899999999999864 455689999999999999 5665 6789999999999999 7899
Q ss_pred hhhhcccccceeecCCCcCCcccCC
Q 038739 379 CLGNFSDELLVLDLQGNNLPLSKGC 403 (477)
Q Consensus 379 ~l~~l~~~L~~L~Ls~N~l~~~~p~ 403 (477)
.+..++ +|+.|++++|++++.+|.
T Consensus 279 ~l~~l~-~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 279 SLIHLS-SETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp GGGGSC-TTCEEECCSCCCCHHHHH
T ss_pred HHhhcc-ccCEEEecCCCCCCcCHH
Confidence 999998 999999999999988775
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.2e-27 Score=236.92 Aligned_cols=247 Identities=25% Similarity=0.246 Sum_probs=193.0
Q ss_pred CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739 35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114 (477)
Q Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 114 (477)
..+.++.++..++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567888888777 4554443 678888888888887777888888888888888888877777788888888888888
Q ss_pred CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCC-cCCCcCCcCCCCCCCCCEEEccCCccccc
Q 038739 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN-NFSGDLLGPIGNLRSLEAINVAKCNFSGQ 193 (477)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 193 (477)
+|+++...+..+..+++|++|++++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 88888666667888888888888888887776777888888888888884 4444445567888888888888888874
Q ss_pred cchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc-hhh
Q 038739 194 ITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFL 272 (477)
Q Consensus 194 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l 272 (477)
+| .+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+..+....+ ..+++|++|++++|+++.+| ..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGS--FQGLMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTCCCCEECTTSS-TTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cc-ccCCCcccCEEECCCCccCccChhh--hccCccCCEEECCCCceeEEChhhh-cCCCCCCEEECCCCCCCccChhHh
Confidence 34 4777888888888888888776655 7888888888888887766554332 25678888888888887776 456
Q ss_pred hcCCCcCEEeccCCccc
Q 038739 273 QNQHHLRFMDLSDNRIQ 289 (477)
Q Consensus 273 ~~~~~L~~L~Ls~n~i~ 289 (477)
..+++|+.|+|++|.+.
T Consensus 276 ~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEcCCCCcc
Confidence 77888888888888775
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=6.5e-30 Score=245.10 Aligned_cols=270 Identities=21% Similarity=0.130 Sum_probs=160.9
Q ss_pred CCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccC
Q 038739 60 LKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRS 139 (477)
Q Consensus 60 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 139 (477)
++..+++.+.+.......+..+++|++|++++|++++..|..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445555665554444445556677777777777766666677777777777777777764433 66677777777777
Q ss_pred CCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccc
Q 038739 140 CGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIE 219 (477)
Q Consensus 140 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 219 (477)
|.+++. ...++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 90 n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQEL-----LVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEE-----EECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Cccccc-----cCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 766432 22366677777776666543332 3556666666666665555555566666666666666555433
Q ss_pred hhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCcccccCCccCCcc
Q 038739 220 LDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDP 299 (477)
Q Consensus 220 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~ 299 (477)
.. ....+++|++|++++|.++ .++.. ..+++|++|++++|++++..+ .+.
T Consensus 162 ~~-~~~~l~~L~~L~L~~N~l~-------------------------~~~~~-~~l~~L~~L~Ls~N~l~~l~~-~~~-- 211 (317)
T 3o53_A 162 AE-LAASSDTLEHLNLQYNFIY-------------------------DVKGQ-VVFAKLKTLDLSSNKLAFMGP-EFQ-- 211 (317)
T ss_dssp GG-GGGGTTTCCEEECTTSCCC-------------------------EEECC-CCCTTCCEEECCSSCCCEECG-GGG--
T ss_pred HH-HhhccCcCCEEECCCCcCc-------------------------ccccc-cccccCCEEECCCCcCCcchh-hhc--
Confidence 22 1223445555555555333 33211 124555555555555553322 233
Q ss_pred cCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCc-ccCCc
Q 038739 300 NMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLS-GLLPQ 378 (477)
Q Consensus 300 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~ 378 (477)
.+++|+.|++++|+++ .+|..+..+++|+.|++++|.++ +.+|.
T Consensus 212 ~l~~L~~L~L~~N~l~-----------------------------------~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-----------------------------------LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp GGTTCSEEECTTSCCC-----------------------------------EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred ccCcccEEECcCCccc-----------------------------------chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 4555555555555544 23555667778888888888887 66777
Q ss_pred hhhhcccccceeecCC-CcCCcccCCCC
Q 038739 379 CLGNFSDELLVLDLQG-NNLPLSKGCES 405 (477)
Q Consensus 379 ~l~~l~~~L~~L~Ls~-N~l~~~~p~~~ 405 (477)
.+..++ .|+.+++++ +.+.|..|...
T Consensus 257 ~~~~~~-~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 257 FFSKNQ-RVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp HHHTCH-HHHHHHHHHHHHHHSSSSCCC
T ss_pred HHhccc-cceEEECCCchhccCCchhcc
Confidence 778887 888888884 45666666544
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=7.7e-30 Score=244.62 Aligned_cols=239 Identities=19% Similarity=0.181 Sum_probs=131.3
Q ss_pred CCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCC
Q 038739 54 IGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLK 133 (477)
Q Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 133 (477)
+..+++|++|++++|.+++..|..|..+++|++|++++|++++..+ +..+++|++|++++|.+++. + ..++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcC
Confidence 3334444444444444444434444444455555555544433222 44455555555555554421 1 224555
Q ss_pred EEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhh-hcCCCCCEEeCcCC
Q 038739 134 LLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL-RNLSQLTALDLAQN 212 (477)
Q Consensus 134 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n 212 (477)
+|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 555555555443322 23556666666666665555556666666666666666665555444 35667777777777
Q ss_pred cCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCccc-cc
Q 038739 213 SYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQ-GK 291 (477)
Q Consensus 213 ~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~-~~ 291 (477)
.+.+... ...+++|++|++++|.++.++.. ...+++|++|++++|.++.+|..+..+++|+.|++++|++. +.
T Consensus 180 ~l~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 180 FIYDVKG----QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp CCCEEEC----CCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred cCccccc----ccccccCCEEECCCCcCCcchhh--hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence 7665532 22356666666666655544332 22445666666666666666666666667777777777666 45
Q ss_pred CCccCCcccCCCCCeEEec
Q 038739 292 VPKWLLDPNMQNLNGFNFS 310 (477)
Q Consensus 292 ~p~~~~~~~l~~L~~L~Ls 310 (477)
+|.++. .+++|+.++++
T Consensus 254 ~~~~~~--~~~~L~~l~l~ 270 (317)
T 3o53_A 254 LRDFFS--KNQRVQTVAKQ 270 (317)
T ss_dssp HHHHHH--TCHHHHHHHHH
T ss_pred HHHHHh--ccccceEEECC
Confidence 555554 55666666665
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=8.2e-30 Score=243.84 Aligned_cols=251 Identities=20% Similarity=0.216 Sum_probs=145.9
Q ss_pred CCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCC-Cccccccc-------CCCCccEEEccCCcCcCCCCccc
Q 038739 55 GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYF-GELPTSIR-------NLFSLEKLDLSFNNFSGEFPWST 126 (477)
Q Consensus 55 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~ 126 (477)
+..++|++|++++|.+ .+|..+... |++|++++|++. ..+|..+. ++++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3344555555555555 344433322 555555555552 22333332 45556666666666655555544
Q ss_pred --cCCCCCCEEEccCCCCcccCCccccCC-----CCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccc--cchh
Q 038739 127 --GNFSSLKLLDLRSCGFWGKVPHSIGNF-----TQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ--ITSS 197 (477)
Q Consensus 127 --~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~ 197 (477)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..+..+..+++|++|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 5555666666666665544 4444444 5666666666666655555666666666666666665443 1222
Q ss_pred h--hcCCCCCEEeCcCCcCccccchh-hhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhc
Q 038739 198 L--RNLSQLTALDLAQNSYRGMIELD-VLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQN 274 (477)
Q Consensus 198 l--~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~ 274 (477)
+ ..+++|++|++++|.+.+..... ..+..+++|++|++++|.+...........+++|++|++++|.++.+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~- 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP- 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence 3 56666667777766666332211 1244566777777777765554432333345677777777777777776554
Q ss_pred CCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccc
Q 038739 275 QHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTG 316 (477)
Q Consensus 275 ~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~ 316 (477)
++|++|++++|++++. |. +. .+++|++|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~--~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PD--ELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TT--TSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hh-Hh--hCCCCCEEeccCCCCCC
Confidence 6788888888888755 55 44 67888888888887765
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=9.8e-30 Score=243.29 Aligned_cols=252 Identities=19% Similarity=0.197 Sum_probs=201.5
Q ss_pred cccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCc-ccCCcccC-------CCCCCCEEeCcCCCCCCcccc
Q 038739 29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFF-GELPISMG-------NLGSLKVLDLSQNGYFGELPT 100 (477)
Q Consensus 29 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~ 100 (477)
.++..++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|++++.+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 355667899999999998 556555443 888899999884 45565554 689999999999999888888
Q ss_pred cc--cCCCCccEEEccCCcCcCCCCccccCC-----CCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCc--CC
Q 038739 101 SI--RNLFSLEKLDLSFNNFSGEFPWSTGNF-----SSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGD--LL 171 (477)
Q Consensus 101 ~l--~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~ 171 (477)
.+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8899999999999999866 7777766 8999999999999888888899999999999999987654 22
Q ss_pred cCC--CCCCCCCEEEccCCcccc---ccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcccccc
Q 038739 172 GPI--GNLRSLEAINVAKCNFSG---QITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKA 246 (477)
Q Consensus 172 ~~l--~~l~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~ 246 (477)
..+ ..+++|++|++++|.+++ .....+..+++|++|++++|.+.+..+.. .+..+++|++|++++|.++.++..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~Ls~N~l~~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-SCDWPSQLNSLNLSFTGLKQVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-CCCCCTTCCEEECTTSCCSSCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-hhhhcCCCCEEECCCCccChhhhh
Confidence 233 788999999999999883 22244567899999999999998866322 255678999999999988755433
Q ss_pred CCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCccccc
Q 038739 247 TSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQGK 291 (477)
Q Consensus 247 ~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~~~ 291 (477)
. . ++|++|++++|+++.+|. +..+++|++|++++|++++.
T Consensus 272 ~---~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 272 L---P-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp C---C-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred c---c-CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence 2 2 689999999999988877 88899999999999998753
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.2e-29 Score=262.44 Aligned_cols=371 Identities=14% Similarity=0.035 Sum_probs=270.4
Q ss_pred CCCEEEccCCC-CCC-CccccccCCCCCCEEEcccccCCcc----ccccCCCCCCCCEEecccCcCc----ccCCcccCC
Q 038739 11 KLLHLDLSLNE-LQG-ELPVSVGNLHSLEELDLSANFLSSE----WPISIGNLSSLKELDLSQNRFF----GELPISMGN 80 (477)
Q Consensus 11 ~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~ 80 (477)
+|++|++++|. ++. .++.....+++|++|+|++|.+++. ++..+..+++|++|++++|.++ +.++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 49999999986 221 1222345889999999999988655 3445577899999999999987 234455678
Q ss_pred CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCc---CCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCc
Q 038739 81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFS---GEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQ 157 (477)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 157 (477)
+++|++|++++|.+.+ ++..+..+++|++|+++..... ...+..+..+++|+.|+++++.. ..+|..+..+++|+
T Consensus 219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCC
T ss_pred CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCc
Confidence 8999999999998865 6788899999999999864332 23445677889999999988643 56777888899999
Q ss_pred EEECCCCcCCCcCC-cCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcC-----------CcCccccchhhhhc
Q 038739 158 YLHLGSNNFSGDLL-GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQ-----------NSYRGMIELDVLLT 225 (477)
Q Consensus 158 ~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~ 225 (477)
+|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++ +.+++.. ......
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~-~~~l~~ 375 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG-LIALAQ 375 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH-HHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH-HHHHHh
Confidence 99999999765433 3367899999999994433334455567899999999994 4554332 222355
Q ss_pred CCCCCCEEeCCCCCCccccccCCccCcCcccEEEcc----CCCCCCc------chhhhcCCCcCEEeccCCc--ccccCC
Q 038739 226 SWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLR----SCNLTKF------PNFLQNQHHLRFMDLSDNR--IQGKVP 293 (477)
Q Consensus 226 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~----~n~l~~~------p~~l~~~~~L~~L~Ls~n~--i~~~~p 293 (477)
.+++|++|+++.+.++..........+++|++|+++ .+.++.. +..+..+++|++|+++.|. +++..+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 689999999988766543322222247799999996 6677654 3457789999999998654 666655
Q ss_pred ccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccC-CChhhhccCCCCeEeCCCCcC
Q 038739 294 KWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGE-IPSWICNLNILESLVLSHNNL 372 (477)
Q Consensus 294 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~-~p~~~~~l~~L~~LdLs~N~l 372 (477)
..+.. .+++|+.|++++|++++.... .+....++|+.|++++|.+++. ++..+..+++|++|+|++|++
T Consensus 456 ~~~~~-~~~~L~~L~L~~n~l~~~~~~---------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 456 SYIGQ-YSPNVRWMLLGYVGESDEGLM---------EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHHH-SCTTCCEEEECSCCSSHHHHH---------HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HHHHH-hCccceEeeccCCCCCHHHHH---------HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 55442 589999999999998752110 1123467899999999999865 444556799999999999999
Q ss_pred cccCCchhh-hcccccceeecCCC
Q 038739 373 SGLLPQCLG-NFSDELLVLDLQGN 395 (477)
Q Consensus 373 ~~~~p~~l~-~l~~~L~~L~Ls~N 395 (477)
++.-...+. .+| .+....+..+
T Consensus 526 t~~~~~~l~~~~p-~l~~~~~~~~ 548 (592)
T 3ogk_B 526 SMTGQDLMQMARP-YWNIELIPSR 548 (592)
T ss_dssp CTTCTTGGGGCCT-TEEEEEECCC
T ss_pred CHHHHHHHHHhCC-CcEEEEecCc
Confidence 876444443 344 6666555544
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.4e-26 Score=217.38 Aligned_cols=203 Identities=22% Similarity=0.182 Sum_probs=104.6
Q ss_pred CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739 35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114 (477)
Q Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 114 (477)
+|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555554444455555555555555555544444455555555555555
Q ss_pred CCcCcCCCCccccCCCCCCEEEccCCCCccc-CCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCC----EEEccCCc
Q 038739 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGK-VPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLE----AINVAKCN 189 (477)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~n~ 189 (477)
+|.+++..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5555544444455555555555555555432 345555555555555555555544444444444444 55555555
Q ss_pred cccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCC
Q 038739 190 FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240 (477)
Q Consensus 190 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i 240 (477)
+++..+..+. ..+|+.|++++|.+++..+.. +..+++|+.|++++|.+
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGI--FDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTT--TTTCCSCCEEECCSSCB
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhH--hcccccccEEEccCCcc
Confidence 5543333222 235555555555555443322 45555555566655543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.7e-27 Score=241.41 Aligned_cols=234 Identities=20% Similarity=0.200 Sum_probs=121.6
Q ss_pred CCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 038739 59 SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLR 138 (477)
Q Consensus 59 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 138 (477)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 44444444444444444444444444444444444433322 444445555555555444211 12455555555
Q ss_pred CCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhh-cCCCCCEEeCcCCcCccc
Q 038739 139 SCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLR-NLSQLTALDLAQNSYRGM 217 (477)
Q Consensus 139 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~ 217 (477)
+|.+.+..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+.+.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 5555443322 234556666666666555555555566666666666666655555554 566666666666666554
Q ss_pred cchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCccc-ccCCccC
Q 038739 218 IELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNRIQ-GKVPKWL 296 (477)
Q Consensus 218 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~i~-~~~p~~~ 296 (477)
.+ ...+++|+.|++++|.++.++.. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.+. +.+|.++
T Consensus 185 ~~----~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 185 KG----QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EC----CCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc----cccCCCCCEEECCCCCCCCCCHh--HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 32 22355566666666555443322 12345566666666666556655566666666666666665 4444444
Q ss_pred CcccCCCCCeEEec
Q 038739 297 LDPNMQNLNGFNFS 310 (477)
Q Consensus 297 ~~~~l~~L~~L~Ls 310 (477)
. .++.|+.++++
T Consensus 259 ~--~l~~L~~l~~~ 270 (487)
T 3oja_A 259 S--KNQRVQTVAKQ 270 (487)
T ss_dssp T--TCHHHHHHHHH
T ss_pred H--hCCCCcEEecc
Confidence 4 45555555554
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=5.1e-25 Score=206.05 Aligned_cols=202 Identities=21% Similarity=0.227 Sum_probs=143.4
Q ss_pred CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739 11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS 90 (477)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 90 (477)
..++++++++.++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4677888887777 4554443 567888888887776666677777888888888887775555556777778888888
Q ss_pred CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL 170 (477)
Q Consensus 91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 170 (477)
+|++.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77776665666777777777777777777666666777777777777777776655555677777777777777777665
Q ss_pred CcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCc
Q 038739 171 LGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR 215 (477)
Q Consensus 171 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 215 (477)
+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 556666777777777777776555555666666777777666654
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.3e-25 Score=210.80 Aligned_cols=213 Identities=22% Similarity=0.169 Sum_probs=157.8
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL 81 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 81 (477)
+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..+.++
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 455553 468888888888876666677788888888888888877666677788888888888888876666777888
Q ss_pred CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCC-CCccccCCCCCCEEEccCCCCcccCCccccCCCCCc---
Q 038739 82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE-FPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQ--- 157 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~--- 157 (477)
++|++|++++|++.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 8888888888887766665677788888888888887753 577777788888888888887766666666555555
Q ss_pred -EEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccc
Q 038739 158 -YLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGM 217 (477)
Q Consensus 158 -~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 217 (477)
+|++++|.+++..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 180 l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 180 LSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp EEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred eeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 778888887765554443 34788888888888766666677788888888888877654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.3e-26 Score=233.06 Aligned_cols=233 Identities=24% Similarity=0.231 Sum_probs=135.7
Q ss_pred CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEcc
Q 038739 35 SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLS 114 (477)
Q Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 114 (477)
+|++|+|++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 56666666666655555555666666666666666554333 555566666666666553221 12556666666
Q ss_pred CCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCC-CCCCCCEEEccCCccccc
Q 038739 115 FNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIG-NLRSLEAINVAKCNFSGQ 193 (477)
Q Consensus 115 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~ 193 (477)
+|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6666543332 235566666666666555555556666666666666666655554443 456666666666666543
Q ss_pred cchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCC--Ccchh
Q 038739 194 ITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLT--KFPNF 271 (477)
Q Consensus 194 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~--~~p~~ 271 (477)
.+ ...+++|+.|++++|.+++.++. +..+++|+.|++++|.+..++.. ...+++|+.|++++|.+. .+|.+
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~~lp~~--l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCCCEECTT--CCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cc--cccCCCCCEEECCCCCCCCCCHh---HcCCCCccEEEecCCcCcccchh--hccCCCCCEEEcCCCCCcCcchHHH
Confidence 22 22456666666666666654432 45556666666666655543322 124566777777777775 56777
Q ss_pred hhcCCCcCEEecc
Q 038739 272 LQNQHHLRFMDLS 284 (477)
Q Consensus 272 l~~~~~L~~L~Ls 284 (477)
+..++.|+.++++
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 8888888888776
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6.6e-28 Score=251.34 Aligned_cols=378 Identities=16% Similarity=0.097 Sum_probs=234.9
Q ss_pred CCCCCCCEEEccCCCCCC---Ccc------------ccccCCCCCCEEEcccccCCccccccCC-CCCCCCEEecccC-c
Q 038739 7 GNLSKLLHLDLSLNELQG---ELP------------VSVGNLHSLEELDLSANFLSSEWPISIG-NLSSLKELDLSQN-R 69 (477)
Q Consensus 7 ~~l~~L~~L~L~~n~l~~---~~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~ 69 (477)
..+++|++|+++++.... ..| .....+++|++|++++|.+++..+..+. .+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 456777777777764211 111 1124567777777777777665555553 5677777777777 3
Q ss_pred Cccc-CCcccCCCCCCCEEeCcCCCCCCcccccc----cCCCCccEEEccCCc--CcC-CCCccccCCCCCCEEEccCCC
Q 038739 70 FFGE-LPISMGNLGSLKVLDLSQNGYFGELPTSI----RNLFSLEKLDLSFNN--FSG-EFPWSTGNFSSLKLLDLRSCG 141 (477)
Q Consensus 70 l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~Ls~n~--l~~-~~~~~~~~l~~L~~L~L~~n~ 141 (477)
++.. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. ++. .++.....+++|++|++++|.
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 3321 33334467777777777777654433322 355677777777775 110 011112345777777777763
Q ss_pred CcccCCccccCCCCCcEEECCCCc--------------------------CC----CcCCcCCCCCCCCCEEEccCCccc
Q 038739 142 FWGKVPHSIGNFTQLQYLHLGSNN--------------------------FS----GDLLGPIGNLRSLEAINVAKCNFS 191 (477)
Q Consensus 142 ~~~~~~~~l~~l~~L~~L~l~~n~--------------------------l~----~~~~~~l~~l~~L~~L~l~~n~l~ 191 (477)
..+.++..+..+++|++|+++.+. +. +.++..+..+++|++|++++|.++
T Consensus 223 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred cHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence 323345555566666666654331 11 122223335789999999999977
Q ss_pred ccc-chhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCC---------CCCccccccCCccCcCcccEEEcc
Q 038739 192 GQI-TSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSL---------NRLSVLTKATSDTTSQKLKYIGLR 261 (477)
Q Consensus 192 ~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~---------n~i~~~~~~~~~~~~~~L~~L~L~ 261 (477)
+.. ...+..+++|++|++++| +.. .........+++|+.|++++ +.++..+.......+++|++|.+.
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~-~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IED-AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCH-HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence 543 334668999999999988 332 22222345689999999843 323222111111247899999998
Q ss_pred CCCCCCc-chhh-hcCCCcCEEecc--C----CcccccCC-----ccCCcccCCCCCeEEecCCcccccCCCCcccCCCC
Q 038739 262 SCNLTKF-PNFL-QNQHHLRFMDLS--D----NRIQGKVP-----KWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK 328 (477)
Q Consensus 262 ~n~l~~~-p~~l-~~~~~L~~L~Ls--~----n~i~~~~p-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~ 328 (477)
.+.++.. +..+ ..+++|+.|+++ + +.+++... ..+. .+++|+.|++++ .+++.....
T Consensus 381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~--~~~~L~~L~L~~-~l~~~~~~~------- 450 (594)
T 2p1m_B 381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE--HCKDLRRLSLSG-LLTDKVFEY------- 450 (594)
T ss_dssp ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHH--HCTTCCEEECCS-SCCHHHHHH-------
T ss_pred cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHh--hCCCccEEeecC-cccHHHHHH-------
Confidence 8888643 2333 468999999999 4 55552211 1123 678999999977 554321100
Q ss_pred CCCCCCCCccceeecCCCcCccCCChhh-hccCCCCeEeCCCCcCcccCCch-hhhcccccceeecCCCcCCc
Q 038739 329 GPLPVPPPGTITYLASNNSLTGEIPSWI-CNLNILESLVLSHNNLSGLLPQC-LGNFSDELLVLDLQGNNLPL 399 (477)
Q Consensus 329 ~~~~~~~~~l~~L~ls~n~l~~~~p~~~-~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~ 399 (477)
+....++|+.|++++|.+++..+..+ ..+++|+.|+|++|.+++..+.. ...++ +|++|++++|+++.
T Consensus 451 --l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 451 --IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE-TMRSLWMSSCSVSF 520 (594)
T ss_dssp --HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG-GSSEEEEESSCCBH
T ss_pred --HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC-CCCEEeeeCCCCCH
Confidence 01125689999999999987666665 67999999999999997655443 34577 99999999999843
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.5e-24 Score=204.84 Aligned_cols=204 Identities=22% Similarity=0.232 Sum_probs=165.9
Q ss_pred CCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCC
Q 038739 6 LGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLK 85 (477)
Q Consensus 6 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 85 (477)
+++++++++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 678889999999999998 5554553 689999999999988888889999999999999999885433 27888999
Q ss_pred EEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCc
Q 038739 86 VLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN 165 (477)
Q Consensus 86 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 165 (477)
+|++++|++. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999999885 667778888899999999999887666778888888899988888877766777888888888888888
Q ss_pred CCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCcc
Q 038739 166 FSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRG 216 (477)
Q Consensus 166 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 216 (477)
++...+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 88766666777888888888888887 556666667777888887777653
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3.2e-24 Score=200.64 Aligned_cols=190 Identities=22% Similarity=0.211 Sum_probs=172.3
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL 81 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 81 (477)
+|..+. +++++|++++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|++++|.+++..+..|..+
T Consensus 31 ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 108 (270)
T 2o6q_A 31 IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL 108 (270)
T ss_dssp CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence 565554 589999999999998877889999999999999999997777778999999999999999997777788999
Q ss_pred CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEEC
Q 038739 82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHL 161 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 161 (477)
++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 99999999999998888888999999999999999999776677899999999999999998877778999999999999
Q ss_pred CCCcCCCcCCcCCCCCCCCCEEEccCCccccc
Q 038739 162 GSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ 193 (477)
Q Consensus 162 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 193 (477)
++|.+++..+..+..+++|+.|++++|.+...
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 189 DNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 99999987777789999999999999988643
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=5.5e-25 Score=206.03 Aligned_cols=201 Identities=20% Similarity=0.170 Sum_probs=109.6
Q ss_pred CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739 8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87 (477)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 87 (477)
++++|++|++++|.++. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34555566666555542 22 355555666666666655542 245555566666666665554444445555566666
Q ss_pred eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739 88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167 (477)
Q Consensus 88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 167 (477)
++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 66666555544445555555666666666555444444555555566666555555544444555555555555555555
Q ss_pred CcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccc
Q 038739 168 GDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIE 219 (477)
Q Consensus 168 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 219 (477)
+..+..+..+++|+.|++++|.+.+ .+++|+.++++.|.+.|..+
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence 5544445555555555555555442 23345555555555555444
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=5.7e-28 Score=251.82 Aligned_cols=378 Identities=15% Similarity=0.095 Sum_probs=249.4
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCcc---cc------------ccCCCCCCCCEEecccCcCcccCCcc
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSE---WP------------ISIGNLSSLKELDLSQNRFFGELPIS 77 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~ 77 (477)
+.++++++... .....+..+++|++|+++++..... .| .....+++|++|++++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 45666665443 3445678899999999999753211 11 12346889999999999988766666
Q ss_pred cC-CCCCCCEEeCcCC-CCCCc-ccccccCCCCccEEEccCCcCcCCCCccc----cCCCCCCEEEccCCC--Cccc-CC
Q 038739 78 MG-NLGSLKVLDLSQN-GYFGE-LPTSIRNLFSLEKLDLSFNNFSGEFPWST----GNFSSLKLLDLRSCG--FWGK-VP 147 (477)
Q Consensus 78 ~~-~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~n~--~~~~-~~ 147 (477)
+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. +... ++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 64 6899999999999 44332 44455589999999999999876554433 367899999999986 2211 12
Q ss_pred ccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcc--------------------------c----cccchh
Q 038739 148 HSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNF--------------------------S----GQITSS 197 (477)
Q Consensus 148 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l--------------------------~----~~~~~~ 197 (477)
..+..+++|++|++++|...+.++..+..+++|++|+++.+.. . +.++..
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~ 284 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAV 284 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHH
Confidence 2234679999999999832223555666778888887654421 1 123333
Q ss_pred hhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccC---------CCCCC-
Q 038739 198 LRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRS---------CNLTK- 267 (477)
Q Consensus 198 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~---------n~l~~- 267 (477)
+..+++|++|++++|.+.+.. ....+..+++|+.|++++| +...+.......+++|++|++.+ +.++.
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~-l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYD-LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHH-HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHhhCCCCEEEccCCCCCHHH-HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 446678888888888755332 2223567788888888876 22111111111467788888833 33432
Q ss_pred -cchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEec--C----CcccccCCCCcccCCCCCCCCCCCCccce
Q 038739 268 -FPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFS--H----NLLTGFDQHPVVLPGNKGPLPVPPPGTIT 340 (477)
Q Consensus 268 -~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls--~----N~l~~~~~~~~~l~~n~~~~~~~~~~l~~ 340 (477)
+......+++|+.|+++.|++++..+..+.. .+++|+.|+++ + +.++...... ....+....++|+.
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~-----~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPLDI-----GFGAIVEHCKDLRR 436 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCCTHH-----HHHHHHHHCTTCCE
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCchhh-----HHHHHHhhCCCccE
Confidence 1222345788888888888887655544431 47889999988 3 4444211000 00000122568999
Q ss_pred eecCCCcCccCCChhhhc-cCCCCeEeCCCCcCcccCCchh-hhcccccceeecCCCcCCccc
Q 038739 341 YLASNNSLTGEIPSWICN-LNILESLVLSHNNLSGLLPQCL-GNFSDELLVLDLQGNNLPLSK 401 (477)
Q Consensus 341 L~ls~n~l~~~~p~~~~~-l~~L~~LdLs~N~l~~~~p~~l-~~l~~~L~~L~Ls~N~l~~~~ 401 (477)
|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..++ +|++|++++|++++..
T Consensus 437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~-~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD-SLRKLEIRDCPFGDKA 497 (594)
T ss_dssp EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT-TCCEEEEESCSCCHHH
T ss_pred EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC-CcCEEECcCCCCcHHH
Confidence 99987 777776677766 8999999999999987666555 5677 9999999999985543
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=2.2e-24 Score=197.99 Aligned_cols=205 Identities=17% Similarity=0.151 Sum_probs=165.9
Q ss_pred CCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCc-CcccCCcccCCCCCCCEEeCcC-CCCCCccc
Q 038739 22 LQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR-FFGELPISMGNLGSLKVLDLSQ-NGYFGELP 99 (477)
Q Consensus 22 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~ 99 (477)
++ .+|. +. ++|++|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |++++..+
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 54 5565 33 488999999999987777788889999999999996 7766666888889999999998 88876666
Q ss_pred ccccCCCCccEEEccCCcCcCCCCccccCCCCCC---EEEccCC-CCcccCCccccCCCCCc-EEECCCCcCCCcCCcCC
Q 038739 100 TSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLK---LLDLRSC-GFWGKVPHSIGNFTQLQ-YLHLGSNNFSGDLLGPI 174 (477)
Q Consensus 100 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~---~L~L~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l 174 (477)
..|.++++|++|++++|.+++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|.++...+..+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 788889999999999999885 665 77888888 9999999 88777667788899999 99999999885444445
Q ss_pred CCCCCCCEEEccCCc-cccccchhhhcC-CCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCC
Q 038739 175 GNLRSLEAINVAKCN-FSGQITSSLRNL-SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLN 238 (477)
Q Consensus 175 ~~l~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n 238 (477)
.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|.+++..+ ..+++|+.|+++++
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-----KGLEHLKELIARNT 236 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC-----TTCTTCSEEECTTC
T ss_pred CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh-----hHhccCceeeccCc
Confidence 44 789999999994 887667788888 899999999999886553 25788999998876
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=5.1e-24 Score=199.42 Aligned_cols=191 Identities=23% Similarity=0.212 Sum_probs=173.0
Q ss_pred ccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCC
Q 038739 4 SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83 (477)
Q Consensus 4 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 83 (477)
+.++.+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence 4578899999999999999863 37999999999999999999888888999999999999999999877778999999
Q ss_pred CCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCC
Q 038739 84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGS 163 (477)
Q Consensus 84 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 163 (477)
|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 99999999999887777889999999999999999987777789999999999999999988888899999999999999
Q ss_pred CcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCC
Q 038739 164 NNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQ 203 (477)
Q Consensus 164 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 203 (477)
|.+.+ .++.|+.++++.|.++|.+|.+++.++.
T Consensus 215 N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 215 NPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 98864 3668999999999999999988776543
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3e-23 Score=195.86 Aligned_cols=203 Identities=22% Similarity=0.190 Sum_probs=161.8
Q ss_pred cccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCc
Q 038739 29 SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSL 108 (477)
Q Consensus 29 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 108 (477)
.+.+++++++++++++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+ ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 46778899999999999884 444443 688999999999987778888999999999999998865433 3788899
Q ss_pred cEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCC
Q 038739 109 EKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKC 188 (477)
Q Consensus 109 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 188 (477)
++|++++|+++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999988 67778888889999999999888777778888888999999998888777777788888888888888
Q ss_pred ccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCC
Q 038739 189 NFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRL 240 (477)
Q Consensus 189 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i 240 (477)
++++..+..+..+++|+.|++++|++..... . +...++|+.+++++|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~-~--~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPK-G--FFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-T--TTTTCCCSEEECCSCCB
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccCh-h--hcccccCCeEEeCCCCc
Confidence 8886666667778888888888888875433 2 34455677777777743
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.9e-25 Score=216.83 Aligned_cols=264 Identities=14% Similarity=0.136 Sum_probs=139.3
Q ss_pred EEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCccc----ccccCCC-CccEEEccCCcCcCCCCccccCC-----CC
Q 038739 62 ELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELP----TSIRNLF-SLEKLDLSFNNFSGEFPWSTGNF-----SS 131 (477)
Q Consensus 62 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~ 131 (477)
++++++|.+++.+|..+...++|++|++++|.+++..+ +.+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 34566666666666555555557777777776655444 4555666 66666666666665545444432 56
Q ss_pred CCEEEccCCCCcccCCcc----ccCC-CCCcEEECCCCcCCCcCCcCC----CC-CCCCCEEEccCCcccccc----chh
Q 038739 132 LKLLDLRSCGFWGKVPHS----IGNF-TQLQYLHLGSNNFSGDLLGPI----GN-LRSLEAINVAKCNFSGQI----TSS 197 (477)
Q Consensus 132 L~~L~L~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~----~~~ 197 (477)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 666666666665444432 2223 555666666655554333222 11 235555555555554322 222
Q ss_pred hhcCC-CCCEEeCcCCcCccccchh--hhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCC-----cc
Q 038739 198 LRNLS-QLTALDLAQNSYRGMIELD--VLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTK-----FP 269 (477)
Q Consensus 198 l~~l~-~L~~L~L~~n~l~~~~~~~--~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~-----~p 269 (477)
+..++ +|++|++++|.+.+..+.. ..+..++ ++|++|++++|.++. ++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~------------------------~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIP------------------------ASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC------------------------TTCCEEECTTSCGGGSCHHHHH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCC------------------------CCCCEEECCCCCCChhHHHHHH
Confidence 23332 4555555554444332211 0112221 245555555555543 45
Q ss_pred hhhhc-CCCcCEEeccCCcccccCCc----cCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecC
Q 038739 270 NFLQN-QHHLRFMDLSDNRIQGKVPK----WLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLAS 344 (477)
Q Consensus 270 ~~l~~-~~~L~~L~Ls~n~i~~~~p~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls 344 (477)
..+.. .++|++|++++|++++..+. .+. .+++|+.|++++|.+.+.....
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~--~l~~L~~L~L~~n~l~~i~~~~----------------------- 272 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD--SLKHLQTVYLDYDIVKNMSKEQ----------------------- 272 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT--TTTTCSEEEEEHHHHTTCCHHH-----------------------
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh--cCCCccEEEeccCCccccCHHH-----------------------
Confidence 55555 45788888888888765442 222 5677888888887754331100
Q ss_pred CCcCccCCChhhhccCCCCeEeCCCCcCcccCCc
Q 038739 345 NNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQ 378 (477)
Q Consensus 345 ~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~ 378 (477)
...++..+..+++|+.||+++|++.+..+.
T Consensus 273 ----~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 273 ----CKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp ----HHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred ----HHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 012233455666677777777777655443
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2e-25 Score=218.00 Aligned_cols=178 Identities=21% Similarity=0.241 Sum_probs=106.2
Q ss_pred EEEccCCCCCCCccccccCCCCCCEEEcccccCCcccc----ccCCCCC-CCCEEecccCcCcccCCcccCCC-----CC
Q 038739 14 HLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWP----ISIGNLS-SLKELDLSQNRFFGELPISMGNL-----GS 83 (477)
Q Consensus 14 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~ 83 (477)
++++++|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677778877777666666668888888888776655 5666777 78888888887776555555543 77
Q ss_pred CCEEeCcCCCCCCccccc----ccCC-CCccEEEccCCcCcCCCCcccc----C-CCCCCEEEccCCCCcccCC----cc
Q 038739 84 LKVLDLSQNGYFGELPTS----IRNL-FSLEKLDLSFNNFSGEFPWSTG----N-FSSLKLLDLRSCGFWGKVP----HS 149 (477)
Q Consensus 84 L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~~~~~~~----~-l~~L~~L~L~~n~~~~~~~----~~ 149 (477)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.++...+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 777777777776554443 3333 6777777777777654443322 2 2466666666666653322 22
Q ss_pred ccCCC-CCcEEECCCCcCCCcCCcCC----CCC-CCCCEEEccCCccc
Q 038739 150 IGNFT-QLQYLHLGSNNFSGDLLGPI----GNL-RSLEAINVAKCNFS 191 (477)
Q Consensus 150 l~~l~-~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~ 191 (477)
+..++ +|++|++++|.+++..+..+ ..+ ++|++|++++|.++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 23333 55555555555554333222 222 34555555555544
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=8.4e-24 Score=194.04 Aligned_cols=196 Identities=15% Similarity=0.152 Sum_probs=102.1
Q ss_pred CCCEEecccCcCcccCCcccCCCCCCCEEeCcCCC-CCCcccccccCCCCccEEEccC-CcCcCCCCccccCCCCCCEEE
Q 038739 59 SLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG-YFGELPTSIRNLFSLEKLDLSF-NNFSGEFPWSTGNFSSLKLLD 136 (477)
Q Consensus 59 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 136 (477)
+|++|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |++++..+..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555555554444455555555555555554 4443334555555555555555 555544444555555555555
Q ss_pred ccCCCCcccCCccccCCCCCc---EEECCCC-cCCCcCCcCCCCCCCCC-EEEccCCccccccchhhhcCCCCCEEeCcC
Q 038739 137 LRSCGFWGKVPHSIGNFTQLQ---YLHLGSN-NFSGDLLGPIGNLRSLE-AINVAKCNFSGQITSSLRNLSQLTALDLAQ 211 (477)
Q Consensus 137 L~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 211 (477)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++...+..+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 55555543 333 55555555 5555555 55544444455555555 5555555555222223333 5555555555
Q ss_pred Cc-CccccchhhhhcCC-CCCCEEeCCCCCCccccccCCccCcCcccEEEccCC
Q 038739 212 NS-YRGMIELDVLLTSW-KNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSC 263 (477)
Q Consensus 212 n~-l~~~~~~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n 263 (477)
|+ +.+..+.. +..+ ++|+.|++++|+++.++.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~--~~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDA--FGGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTT--TTTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC
T ss_pred CCCcccCCHHH--hhccccCCcEEECCCCccccCChh----HhccCceeeccCc
Confidence 53 55443332 4455 5555555555555433322 2345555555543
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.1e-25 Score=221.93 Aligned_cols=245 Identities=16% Similarity=0.155 Sum_probs=178.2
Q ss_pred CccccccCCCCCCEEEcccccCCcccc----ccCCCCCCCCEEecccCc---CcccCCccc-------CCCCCCCEEeCc
Q 038739 25 ELPVSVGNLHSLEELDLSANFLSSEWP----ISIGNLSSLKELDLSQNR---FFGELPISM-------GNLGSLKVLDLS 90 (477)
Q Consensus 25 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~L~~L~Ls 90 (477)
.++..+..+++|++|+|++|.++...+ ..+..+++|++|++++|. +++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 355567778888888888888876533 347788888899888864 344455444 678889999999
Q ss_pred CCCCCC----cccccccCCCCccEEEccCCcCcCCCCcccc----CC---------CCCCEEEccCCCCc-ccCC---cc
Q 038739 91 QNGYFG----ELPTSIRNLFSLEKLDLSFNNFSGEFPWSTG----NF---------SSLKLLDLRSCGFW-GKVP---HS 149 (477)
Q Consensus 91 ~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~l---------~~L~~L~L~~n~~~-~~~~---~~ 149 (477)
+|.+.. .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.++ ..++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 998876 3667788888999999999888643333333 33 88999999999886 3333 35
Q ss_pred ccCCCCCcEEECCCCcCCC-----cCCcCCCCCCCCCEEEccCCccc----cccchhhhcCCCCCEEeCcCCcCccccch
Q 038739 150 IGNFTQLQYLHLGSNNFSG-----DLLGPIGNLRSLEAINVAKCNFS----GQITSSLRNLSQLTALDLAQNSYRGMIEL 220 (477)
Q Consensus 150 l~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 220 (477)
+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..++..+..+++|++|++++|.+.+....
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6678899999999998873 23336778889999999999886 55677888899999999999988765221
Q ss_pred --hhhh--cCCCCCCEEeCCCCCCccccc--cCCc--cCcCcccEEEccCCCCCCcc
Q 038739 221 --DVLL--TSWKNLEFLGLSLNRLSVLTK--ATSD--TTSQKLKYIGLRSCNLTKFP 269 (477)
Q Consensus 221 --~~~~--~~~~~L~~L~ls~n~i~~~~~--~~~~--~~~~~L~~L~L~~n~l~~~p 269 (477)
...+ ..+++|+.|++++|.+...+. .+.. ..+++|++|++++|.++...
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 1123 348899999999997765211 1111 13578999999999986554
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=1.3e-25 Score=221.27 Aligned_cols=239 Identities=21% Similarity=0.257 Sum_probs=170.8
Q ss_pred ccccCCCCCCCCEEecccCcCccc----CCcccCCCCCCCEEeCcCCCC---CCcccccc-------cCCCCccEEEccC
Q 038739 50 WPISIGNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGY---FGELPTSI-------RNLFSLEKLDLSF 115 (477)
Q Consensus 50 ~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~l-------~~l~~L~~L~Ls~ 115 (477)
++..+..+++|++|++++|.+... ++..+..+++|++|++++|.+ ++.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 445677889999999999999865 334578899999999999744 44455444 7899999999999
Q ss_pred CcCcC----CCCccccCCCCCCEEEccCCCCcccCCccc----cCC---------CCCcEEECCCCcCCC-cCC---cCC
Q 038739 116 NNFSG----EFPWSTGNFSSLKLLDLRSCGFWGKVPHSI----GNF---------TQLQYLHLGSNNFSG-DLL---GPI 174 (477)
Q Consensus 116 n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l----~~l---------~~L~~L~l~~n~l~~-~~~---~~l 174 (477)
|.++. .+|..+..+++|++|++++|.++...+..+ ..+ ++|++|++++|.++. .++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99986 366778899999999999999965444333 334 899999999999973 333 356
Q ss_pred CCCCCCCEEEccCCcccc-----ccchhhhcCCCCCEEeCcCCcCc----cccchhhhhcCCCCCCEEeCCCCCCccccc
Q 038739 175 GNLRSLEAINVAKCNFSG-----QITSSLRNLSQLTALDLAQNSYR----GMIELDVLLTSWKNLEFLGLSLNRLSVLTK 245 (477)
Q Consensus 175 ~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~ 245 (477)
..+++|++|++++|.++. ..+..+..+++|++|++++|.+. ...+. .+..+++|+.|++++|.+...+.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~--~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--ALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH--HGGGCTTCCEEECTTCCCCHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH--HHccCCCcCEEECCCCCCchhhH
Confidence 678999999999999973 23337889999999999999986 22232 36778888888888886654422
Q ss_pred cCCc-----cCcCcccEEEccCCCCCC-----cchhh-hcCCCcCEEeccCCcccc
Q 038739 246 ATSD-----TTSQKLKYIGLRSCNLTK-----FPNFL-QNQHHLRFMDLSDNRIQG 290 (477)
Q Consensus 246 ~~~~-----~~~~~L~~L~L~~n~l~~-----~p~~l-~~~~~L~~L~Ls~n~i~~ 290 (477)
.... ..+++|++|++++|.++. +|..+ .++++|++|++++|++++
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 2110 113445555555555543 44444 334555555555555543
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=8.5e-23 Score=188.76 Aligned_cols=180 Identities=22% Similarity=0.206 Sum_probs=125.7
Q ss_pred CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739 11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS 90 (477)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 90 (477)
..++++++++.++ .+|..+. +++++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567777777777 4554444 577777777777777766677777777777777777776666667777777777777
Q ss_pred CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL 170 (477)
Q Consensus 91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 170 (477)
+|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77776666666777777777777777777555555666777777777777776555556666677777777777776655
Q ss_pred CcCCCCCCCCCEEEccCCccccc
Q 038739 171 LGPIGNLRSLEAINVAKCNFSGQ 193 (477)
Q Consensus 171 ~~~l~~l~~L~~L~l~~n~l~~~ 193 (477)
+..+..+++|++|++++|.+...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 55666666666666666666543
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=4.5e-24 Score=203.80 Aligned_cols=225 Identities=17% Similarity=0.149 Sum_probs=159.5
Q ss_pred CCCCEEEcccccCCccccc---cCCCCCCCCEEecccCcCcccCCccc--CCCCCCCEEeCcCCCCCCccc----ccccC
Q 038739 34 HSLEELDLSANFLSSEWPI---SIGNLSSLKELDLSQNRFFGELPISM--GNLGSLKVLDLSQNGYFGELP----TSIRN 104 (477)
Q Consensus 34 ~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~l~~ 104 (477)
..++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4577788877766532111 12234668888888888887777777 788888888888888876544 34456
Q ss_pred CCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCccc--C--CccccCCCCCcEEECCCCcCCCcCC--c-CCCCC
Q 038739 105 LFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGK--V--PHSIGNFTQLQYLHLGSNNFSGDLL--G-PIGNL 177 (477)
Q Consensus 105 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~--~-~l~~l 177 (477)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++.... . .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 78888888888888877777888888888888888876542 1 2334677888888888888863211 1 24567
Q ss_pred CCCCEEEccCCccccccchhhhcC---CCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCc
Q 038739 178 RSLEAINVAKCNFSGQITSSLRNL---SQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQK 254 (477)
Q Consensus 178 ~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~ 254 (477)
++|++|++++|.+++..|..+..+ ++|++|++++|.++.... . + .++|+.|++++|+++.++. ...+++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~--~--~~~L~~L~Ls~N~l~~~~~---~~~l~~ 295 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-G--L--PAKLRVLDLSSNRLNRAPQ---PDELPE 295 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-C--C--CSCCSCEECCSCCCCSCCC---TTSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-h--h--cCCCCEEECCCCcCCCCch---hhhCCC
Confidence 888888888888887766666655 688888888888874432 2 2 3788888888887775533 235678
Q ss_pred ccEEEccCCCCC
Q 038739 255 LKYIGLRSCNLT 266 (477)
Q Consensus 255 L~~L~L~~n~l~ 266 (477)
|+.|++++|.++
T Consensus 296 L~~L~L~~N~l~ 307 (310)
T 4glp_A 296 VDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECSSTTTS
T ss_pred ccEEECcCCCCC
Confidence 888888888875
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=2.7e-23 Score=198.02 Aligned_cols=196 Identities=22% Similarity=0.294 Sum_probs=128.4
Q ss_pred ccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739 30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE 109 (477)
Q Consensus 30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 109 (477)
+..+++|++|++++|.++.. + .+..+++|++|++++|.+++. +. +..+++|++|++++|++.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 44556677777777766642 3 466667777777777766633 32 66677777777777776543 3466677777
Q ss_pred EEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739 110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN 189 (477)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 189 (477)
+|++++|.+++ ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 77777777663 33 26667777777777777654332 6667777777777777765332 6667777777777777
Q ss_pred cccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccc
Q 038739 190 FSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL 243 (477)
Q Consensus 190 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 243 (477)
+++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.++..
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG----GTTCTTCCEEEEEEEEEECC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc----ccCCCCCCEEEccCCeeecC
Confidence 765433 6677777777777777776553 56677777777777765443
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=9.6e-24 Score=201.50 Aligned_cols=226 Identities=21% Similarity=0.202 Sum_probs=182.5
Q ss_pred CCCCEEEccCCCCCCCccc---cccCCCCCCEEEcccccCCccccccC--CCCCCCCEEecccCcCcccCC----cccCC
Q 038739 10 SKLLHLDLSLNELQGELPV---SVGNLHSLEELDLSANFLSSEWPISI--GNLSSLKELDLSQNRFFGELP----ISMGN 80 (477)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~ 80 (477)
..++.+.+.++.++..... .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578899998877532111 12345779999999999998888887 899999999999999986544 34567
Q ss_pred CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCC--C--CccccCCCCCCEEEccCCCCcccC--Cc-cccCC
Q 038739 81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGE--F--PWSTGNFSSLKLLDLRSCGFWGKV--PH-SIGNF 153 (477)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~~~~l~~L~~L~L~~n~~~~~~--~~-~l~~l 153 (477)
+++|++|++++|++.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++... +. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 89999999999999888888999999999999999997642 2 233468899999999999995321 11 35788
Q ss_pred CCCcEEECCCCcCCCcCCcCCCCC---CCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCC
Q 038739 154 TQLQYLHLGSNNFSGDLLGPIGNL---RSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNL 230 (477)
Q Consensus 154 ~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 230 (477)
++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++... +..+++|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~----~~~l~~L 296 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ----PDELPEV 296 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC----TTSCCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch----hhhCCCc
Confidence 999999999999998877777766 69999999999998 5566553 799999999999997633 5678999
Q ss_pred CEEeCCCCCCcc
Q 038739 231 EFLGLSLNRLSV 242 (477)
Q Consensus 231 ~~L~ls~n~i~~ 242 (477)
+.|++++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999997754
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=6.9e-25 Score=211.92 Aligned_cols=251 Identities=18% Similarity=0.174 Sum_probs=142.2
Q ss_pred CCEEEcccccCCccccccCCCC--CCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCc-ccccccCCCCccEEE
Q 038739 36 LEELDLSANFLSSEWPISIGNL--SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGE-LPTSIRNLFSLEKLD 112 (477)
Q Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ 112 (477)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666555544 2334444 5566666666655544333 34456666666666655433 445555666666666
Q ss_pred ccCCcCcCCCCccccCCCCCCEEEccCC-CCccc-CCccccCCCCCcEEECCCC-cCCCc-CCcCCCCCC-CCCEEEccC
Q 038739 113 LSFNNFSGEFPWSTGNFSSLKLLDLRSC-GFWGK-VPHSIGNFTQLQYLHLGSN-NFSGD-LLGPIGNLR-SLEAINVAK 187 (477)
Q Consensus 113 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~l~~ 187 (477)
+++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666655555555555666666666666 44432 3444556666666666666 55542 344455566 666777766
Q ss_pred C--ccc-cccchhhhcCCCCCEEeCcCCc-CccccchhhhhcCCCCCCEEeCCCCCCccccccC--CccCcCcccEEEcc
Q 038739 188 C--NFS-GQITSSLRNLSQLTALDLAQNS-YRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT--SDTTSQKLKYIGLR 261 (477)
Q Consensus 188 n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~--~~~~~~~L~~L~L~ 261 (477)
| .++ +.++..+..+++|++|++++|. +++..... +..+++|+.|++++|. ...... ....+++|++|+++
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECT
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH--HhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEecc
Confidence 6 343 3445556667777777777776 44333333 5566777777777773 111111 11246678888888
Q ss_pred CCCCCCcchhhhcC-CCcCEEeccCCcccccCCccCC
Q 038739 262 SCNLTKFPNFLQNQ-HHLRFMDLSDNRIQGKVPKWLL 297 (477)
Q Consensus 262 ~n~l~~~p~~l~~~-~~L~~L~Ls~n~i~~~~p~~~~ 297 (477)
+| ++.- .+..+ ..+..|++++|++++..|..+.
T Consensus 281 ~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 281 GI-VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred Cc-cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 77 4221 12222 2355566889999988887765
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.2e-22 Score=184.92 Aligned_cols=181 Identities=19% Similarity=0.207 Sum_probs=150.3
Q ss_pred CCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEc
Q 038739 34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDL 113 (477)
Q Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 113 (477)
...++++++++.++. +|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 456789999988884 554443 58899999999998877778889999999999999998877778888999999999
Q ss_pred cCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccc
Q 038739 114 SFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQ 193 (477)
Q Consensus 114 s~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 193 (477)
++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999877777788888999999999988776666778888889999988888877666788888888888888888877
Q ss_pred cchhhhcCCCCCEEeCcCCcCccc
Q 038739 194 ITSSLRNLSQLTALDLAQNSYRGM 217 (477)
Q Consensus 194 ~~~~l~~l~~L~~L~L~~n~l~~~ 217 (477)
.+..+..+++|+.|++++|.+.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 777788888888888888887654
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=9.3e-24 Score=203.97 Aligned_cols=258 Identities=17% Similarity=0.199 Sum_probs=174.8
Q ss_pred CCCEEeCcCCCCCCcccccccCC--CCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCccc-CCccccCCCCCcEE
Q 038739 83 SLKVLDLSQNGYFGELPTSIRNL--FSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGK-VPHSIGNFTQLQYL 159 (477)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L 159 (477)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4778888888764 4455555 7888888888888765554 45677888888888777654 56667777777777
Q ss_pred ECCCCcCCCcCCcCCCCCCCCCEEEccCC-ccccc-cchhhhcCCCCCEEeCcCC-cCccccchhhhhcCCC-CCCEEeC
Q 038739 160 HLGSNNFSGDLLGPIGNLRSLEAINVAKC-NFSGQ-ITSSLRNLSQLTALDLAQN-SYRGMIELDVLLTSWK-NLEFLGL 235 (477)
Q Consensus 160 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~-~L~~L~l 235 (477)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++... ...+..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV-QVAVAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH-HHHHHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH-HHHHHhcccCCCEEEe
Confidence 77777776666666666777777777777 55542 4555666777777777777 6554211 11234445 5555555
Q ss_pred CCCCCccccccCCccCcCcccEEEccCCCC--CCcchhhhcCCCcCEEeccCCc-ccccCCccCCcccCCCCCeEEecCC
Q 038739 236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNL--TKFPNFLQNQHHLRFMDLSDNR-IQGKVPKWLLDPNMQNLNGFNFSHN 312 (477)
Q Consensus 236 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~l--~~~p~~l~~~~~L~~L~Ls~n~-i~~~~p~~~~~~~l~~L~~L~Ls~N 312 (477)
++|.+ .+ ..+|..+..+++|++|++++|. +++..+..+. .+++|+.|++++|
T Consensus 203 ~~~~~-----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~~L~l~~~ 257 (336)
T 2ast_B 203 SGYRK-----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--QLNYLQHLSLSRC 257 (336)
T ss_dssp CSCGG-----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG--GCTTCCEEECTTC
T ss_pred CCCcc-----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh--CCCCCCEeeCCCC
Confidence 55411 22 2356667788999999999998 7767777776 7888888888887
Q ss_pred cccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeec
Q 038739 313 LLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDL 392 (477)
Q Consensus 313 ~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~L 392 (477)
. + ++......++++++|+.|++++| ++. ..+..+...+..|++
T Consensus 258 ~--~-------------------------------~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l 300 (336)
T 2ast_B 258 Y--D-------------------------------IIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQI 300 (336)
T ss_dssp T--T-------------------------------CCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEE
T ss_pred C--C-------------------------------CCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEE
Confidence 4 1 11111235778999999999999 432 245555435888899
Q ss_pred CCCcCCcccCCCCCC
Q 038739 393 QGNNLPLSKGCESGE 407 (477)
Q Consensus 393 s~N~l~~~~p~~~~~ 407 (477)
++|++++..|...+.
T Consensus 301 ~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 301 NCSHFTTIARPTIGN 315 (336)
T ss_dssp SCCCSCCTTCSSCSS
T ss_pred ecccCccccCCcccc
Confidence 999999988876543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.4e-22 Score=193.11 Aligned_cols=191 Identities=23% Similarity=0.323 Sum_probs=89.0
Q ss_pred CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739 9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88 (477)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 88 (477)
+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 4445555555555442 22 34445555555555555543322 4455555555555555442 12 344455555555
Q ss_pred CcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168 (477)
Q Consensus 89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 168 (477)
+++|++++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 555554332 1 24445555555555555542211 4444555555555554433221 4445555555555555543
Q ss_pred cCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCc
Q 038739 169 DLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYR 215 (477)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 215 (477)
..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.+.
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 221 444455555555555554332 1444555555555555443
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=1.3e-21 Score=189.93 Aligned_cols=241 Identities=18% Similarity=0.143 Sum_probs=157.5
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCC-cccCCCCCCCE-EeCc
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELP-ISMGNLGSLKV-LDLS 90 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~Ls 90 (477)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888888888 666555 3678899999998887666778888999999999988765444 46778888765 5566
Q ss_pred CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccC-CCCcccCCccccCCC-CCcEEECCCCcCCC
Q 038739 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRS-CGFWGKVPHSIGNFT-QLQYLHLGSNNFSG 168 (477)
Q Consensus 91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~ 168 (477)
+|+++...|+.|..+++|++|++++|+++...+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7888777778888888888888888888866555666666777777765 345444444555553 46777777777764
Q ss_pred cCCcCCCCCCCCCEEEccC-CccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccC
Q 038739 169 DLLGPIGNLRSLEAINVAK-CNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKAT 247 (477)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~ 247 (477)
..+..+ ...+|+++++++ |.++...+..|..+++|++|++++|+++...+ ..+.+|+.|.+.++
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-----~~~~~L~~L~~l~~--------- 233 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-----YGLENLKKLRARST--------- 233 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-----SSCTTCCEEECTTC---------
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-----hhhccchHhhhccC---------
Confidence 433333 345667777664 44443333455666666666666666554432 12333333333332
Q ss_pred CccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccCCc
Q 038739 248 SDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSDNR 287 (477)
Q Consensus 248 ~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~n~ 287 (477)
+.++.+|. +..+++|+.++++++.
T Consensus 234 ---------------~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 234 ---------------YNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp ---------------TTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred ---------------CCcCcCCC-chhCcChhhCcCCCCc
Confidence 22355553 5667777777776543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.5e-21 Score=173.52 Aligned_cols=181 Identities=21% Similarity=0.169 Sum_probs=150.1
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN 92 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 92 (477)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 67888888887 445433 468999999999998777777889999999999999998666667888999999999999
Q ss_pred CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCc
Q 038739 93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLG 172 (477)
Q Consensus 93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 172 (477)
++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 9987766778889999999999999987666678889999999999999887766678888999999999987653
Q ss_pred CCCCCCCCCEEEccCCccccccchhhhcCCC
Q 038739 173 PIGNLRSLEAINVAKCNFSGQITSSLRNLSQ 203 (477)
Q Consensus 173 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 203 (477)
.+++|+.|+++.|.+++.+|..++.++.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4567888899999999888887776654
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=2e-21 Score=174.15 Aligned_cols=169 Identities=24% Similarity=0.202 Sum_probs=149.9
Q ss_pred CCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739 2 IPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL 81 (477)
Q Consensus 2 lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 81 (477)
+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+
T Consensus 22 ~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 22 VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence 45444 4689999999999998777788999999999999999998777778999999999999999997777778999
Q ss_pred CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEEC
Q 038739 82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHL 161 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 161 (477)
++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|++|++
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~ 172 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE 172 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHH
T ss_pred cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHH
Confidence 999999999999987777778999999999999999997777778999999999999997743 4578999999
Q ss_pred CCCcCCCcCCcCCCCCCC
Q 038739 162 GSNNFSGDLLGPIGNLRS 179 (477)
Q Consensus 162 ~~n~l~~~~~~~l~~l~~ 179 (477)
+.|.+++.+|..++.++.
T Consensus 173 ~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 173 WINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHCTTTBBCTTSSBCT
T ss_pred HHHhCCceeeccCccccC
Confidence 999999999988877665
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.8e-21 Score=188.98 Aligned_cols=229 Identities=20% Similarity=0.111 Sum_probs=177.9
Q ss_pred CCCccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCcccc-ccCCCCCCCCE-EecccCcCcccCCccc
Q 038739 1 RIPSSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWP-ISIGNLSSLKE-LDLSQNRFFGELPISM 78 (477)
Q Consensus 1 ~lp~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~Ls~n~l~~~~~~~~ 78 (477)
+||..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.++.|+++...|..|
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 367766 3689999999999996666789999999999999999876555 57899999876 5667799998888999
Q ss_pred CCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC-CcCcCCCCccccCCC-CCCEEEccCCCCcccCCccccCCCCC
Q 038739 79 GNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF-NNFSGEFPWSTGNFS-SLKLLDLRSCGFWGKVPHSIGNFTQL 156 (477)
Q Consensus 79 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L 156 (477)
..+++|++|++++|++....+..+....++..|++.+ +.+....+..+..+. .++.|++++|.++.. +.......+|
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L 179 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQL 179 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEE
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC-Chhhccccch
Confidence 9999999999999999877666777778899999966 567655555666664 688999999999654 4444456789
Q ss_pred cEEECCC-CcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeC
Q 038739 157 QYLHLGS-NNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL 235 (477)
Q Consensus 157 ~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l 235 (477)
+++++.+ |.++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.--...| .+..+++|+.+++
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP---~l~~l~~L~~l~l 253 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP---TLEKLVALMEASL 253 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC---CTTTCCSCCEEEC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC---CchhCcChhhCcC
Confidence 9999985 6677655567899999999999999998554443 5567777665553322222 1566777888877
Q ss_pred CCC
Q 038739 236 SLN 238 (477)
Q Consensus 236 s~n 238 (477)
+++
T Consensus 254 ~~~ 256 (350)
T 4ay9_X 254 TYP 256 (350)
T ss_dssp SCH
T ss_pred CCC
Confidence 654
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=3.4e-20 Score=189.54 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=36.7
Q ss_pred ceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcc
Q 038739 339 ITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFS 384 (477)
Q Consensus 339 ~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~ 384 (477)
+.|++++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..+.
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 66666666666 5788888899999999999999999998887764
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=7.9e-20 Score=186.86 Aligned_cols=183 Identities=23% Similarity=0.275 Sum_probs=146.7
Q ss_pred CCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739 11 KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS 90 (477)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 90 (477)
+|++|++++|.+++ +|..+ +++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999986 66555 378999999999998 455 457899999999999986 666 654 89999999
Q ss_pred CCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcC
Q 038739 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDL 170 (477)
Q Consensus 91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 170 (477)
+|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999876 555 67899999999999985 665 56889999999999876 666 65 88999999999988 45
Q ss_pred CcCCCCCCCC-------CEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchh
Q 038739 171 LGPIGNLRSL-------EAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELD 221 (477)
Q Consensus 171 ~~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 221 (477)
|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+.+..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 55 543 67 99999999998 56777777999999999999988766544
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=9e-20 Score=164.73 Aligned_cols=152 Identities=24% Similarity=0.246 Sum_probs=92.7
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN 92 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 92 (477)
+.++++++.++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666666 4444333 46666777666666655556666666666666666666555666666666666666666
Q ss_pred CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739 93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167 (477)
Q Consensus 93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 167 (477)
+++...+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 665444445566666666666666666555555666666666666666655554445555555555555555543
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=2.8e-20 Score=175.59 Aligned_cols=173 Identities=24% Similarity=0.292 Sum_probs=116.7
Q ss_pred ccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739 30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE 109 (477)
Q Consensus 30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 109 (477)
+..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|++++ + ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 44566777777777776644 2 36667777777777777764333 6677777777777777654 2 2366777777
Q ss_pred EEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739 110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN 189 (477)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 189 (477)
+|++++|++++ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 77777777764 2 3566677777777777777554 456777777777777777775443 6677777777777777
Q ss_pred cccccchhhhcCCCCCEEeCcCCcCcc
Q 038739 190 FSGQITSSLRNLSQLTALDLAQNSYRG 216 (477)
Q Consensus 190 l~~~~~~~l~~l~~L~~L~L~~n~l~~ 216 (477)
+++. + .+..+++|+.|++++|.+..
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccC
Confidence 7643 3 36777777777777777654
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=163.60 Aligned_cols=152 Identities=21% Similarity=0.183 Sum_probs=92.3
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCcccc-ccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWP-ISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 91 (477)
+++++++|.++ .+|..+. +.+++|++++|++++..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46667776666 3444332 345667777776665533 3456666666666666666655555666666666666666
Q ss_pred CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167 (477)
Q Consensus 92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 167 (477)
|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6666555555666666666666666666555555666666666666666665555555555555555555555544
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=7.9e-20 Score=172.49 Aligned_cols=186 Identities=22% Similarity=0.267 Sum_probs=114.0
Q ss_pred EEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcC
Q 038739 39 LDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF 118 (477)
Q Consensus 39 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 118 (477)
+.+..+.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 344444444332 23456667777777776653 22 35666677777777776654433 66667777777777766
Q ss_pred cCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhh
Q 038739 119 SGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSL 198 (477)
Q Consensus 119 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 198 (477)
++ ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +
T Consensus 103 ~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 63 22 366667777777777766543 3466666777777777766653 456666677777777776665433 6
Q ss_pred hcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCcc
Q 038739 199 RNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSV 242 (477)
Q Consensus 199 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~ 242 (477)
..+++|+.|++++|.+.+... +..+++|+.|++++|++..
T Consensus 175 ~~l~~L~~L~L~~N~i~~l~~----l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCCEEECCSSCCCBCGG----GTTCTTCSEEEEEEEEEEC
T ss_pred cCCCccCEEECCCCcCCCChh----hccCCCCCEEECcCCcccC
Confidence 666777777777776665432 5566677777777665443
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=8.1e-20 Score=178.00 Aligned_cols=177 Identities=23% Similarity=0.155 Sum_probs=92.9
Q ss_pred CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccC-CCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739 37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMG-NLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF 115 (477)
Q Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 115 (477)
+++++++++++. +|..+. +.++.|+|++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 344555544442 232221 2345555555555444444444 455555555555555444444455555555555555
Q ss_pred CcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCC---CCCCCCCEEEccCCcccc
Q 038739 116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPI---GNLRSLEAINVAKCNFSG 192 (477)
Q Consensus 116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~ 192 (477)
|++++..+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|.+++..+..+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 55554444445555555555555555555445555555555555555555554333333 346666777777776665
Q ss_pred ccchhhhcCCC--CCEEeCcCCcCcc
Q 038739 193 QITSSLRNLSQ--LTALDLAQNSYRG 216 (477)
Q Consensus 193 ~~~~~l~~l~~--L~~L~L~~n~l~~ 216 (477)
..+..+..++. ++.|++++|.+..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 55556666665 3667777777654
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5.3e-19 Score=160.75 Aligned_cols=151 Identities=21% Similarity=0.204 Sum_probs=75.2
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN 92 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 92 (477)
+.++.+++.++ .+|..+. ++|++|++++|++++..|..|..+++|++|++++|++....+..|..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44555555554 3333222 45555555555555555555555555555555555554333344455555555555555
Q ss_pred CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739 93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167 (477)
Q Consensus 93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 167 (477)
++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 554444444455555555555555555 44444444455555555555444333334444444444444444443
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.1e-19 Score=187.69 Aligned_cols=171 Identities=25% Similarity=0.314 Sum_probs=98.7
Q ss_pred CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739 8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87 (477)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 87 (477)
.+++|++|++++|.+.. ++ .+..+++|++|+|++|++.+..+ +..+++|++|+|++|.+.+ ++ .+..+++|++|
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 45566666666666653 23 35666666666666666665433 5566666666666666653 22 45566666666
Q ss_pred eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739 88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167 (477)
Q Consensus 88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 167 (477)
+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.++
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 6666666432 3355566666666666666533 355566666666666666654433 556666666666666665
Q ss_pred CcCCcCCCCCCCCCEEEccCCcccc
Q 038739 168 GDLLGPIGNLRSLEAINVAKCNFSG 192 (477)
Q Consensus 168 ~~~~~~l~~l~~L~~L~l~~n~l~~ 192 (477)
+. ..+..+++|+.|++++|.+.+
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CC--hHHccCCCCCEEEccCCcCcC
Confidence 42 235556666666666665553
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=5.7e-19 Score=159.45 Aligned_cols=152 Identities=22% Similarity=0.221 Sum_probs=110.2
Q ss_pred CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCC
Q 038739 37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFN 116 (477)
Q Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 116 (477)
+.++++++.++. +|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 577788877774 444333 57888888888887666667777888888888888887766777888888888888888
Q ss_pred cCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccc
Q 038739 117 NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFS 191 (477)
Q Consensus 117 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 191 (477)
.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 887555555677777777777777777666677777777777777777777666556666666666666666654
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.8e-19 Score=174.20 Aligned_cols=176 Identities=23% Similarity=0.132 Sum_probs=128.4
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCC-CCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIG-NLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 91 (477)
+.++++++.++ .+|..+. +.+++|+|++|++++..+..+. .+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57778887777 4554443 4577888888888776666676 788888888888888766667778888888888888
Q ss_pred CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccc---cCCCCCcEEECCCCcCCC
Q 038739 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI---GNFTQLQYLHLGSNNFSG 168 (477)
Q Consensus 92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~~ 168 (477)
|+++...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.++...+..+ ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88776666677788888888888888877667777788888888888888765444444 457788888888888876
Q ss_pred cCCcCCCCCCC--CCEEEccCCccc
Q 038739 169 DLLGPIGNLRS--LEAINVAKCNFS 191 (477)
Q Consensus 169 ~~~~~l~~l~~--L~~L~l~~n~l~ 191 (477)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 55555666665 367888887775
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=6.2e-19 Score=159.20 Aligned_cols=153 Identities=22% Similarity=0.170 Sum_probs=97.4
Q ss_pred CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCC-cccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739 37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELP-ISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF 115 (477)
Q Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 115 (477)
+++++++|.++. +|..+. +.+++|++++|++++..+ ..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 467777777764 444332 345677777777765533 3466677777777777777665555666777777777777
Q ss_pred CcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739 116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG 192 (477)
Q Consensus 116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 192 (477)
|++++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77765555556666666666666666666656666666666666666666665555556666666666666665543
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=2.3e-19 Score=159.20 Aligned_cols=154 Identities=14% Similarity=0.186 Sum_probs=88.5
Q ss_pred cCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccE
Q 038739 31 GNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEK 110 (477)
Q Consensus 31 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 110 (477)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44555666666666665 233 4555666666666666443 2234555666666666666665555555666666666
Q ss_pred EEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcc
Q 038739 111 LDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNF 190 (477)
Q Consensus 111 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 190 (477)
|++++|++++..+..+..+++|++|++++|...+.++ .+..+++|++|++++|.+++. + .+..+++|++|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 6666666665555556666666666666665223333 456666666666666666542 2 456666677777766665
Q ss_pred c
Q 038739 191 S 191 (477)
Q Consensus 191 ~ 191 (477)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=3.3e-19 Score=184.18 Aligned_cols=190 Identities=22% Similarity=0.274 Sum_probs=146.8
Q ss_pred CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739 12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91 (477)
Q Consensus 12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 91 (477)
+..+.++.+.+.+..+ +..+++|++|++++|.+... + .+..+++|++|+|++|.+.+..+ +..+++|++|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445566666664333 56778888899998888754 3 57888899999999998875444 78888899999999
Q ss_pred CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCC
Q 038739 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLL 171 (477)
Q Consensus 92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 171 (477)
|.+.+ + ..+..+++|++|+|++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++..+
T Consensus 97 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 88865 3 368888889999998888884 3 3577888888888888888664 567888888888888888886555
Q ss_pred cCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccc
Q 038739 172 GPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGM 217 (477)
Q Consensus 172 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 217 (477)
+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77888888888888888753 3577888888888888887654
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=3e-18 Score=155.76 Aligned_cols=153 Identities=22% Similarity=0.150 Sum_probs=106.7
Q ss_pred CCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739 36 LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF 115 (477)
Q Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 115 (477)
-+.++.++++++. +|..+. ++|++|++++|.+++..|..|..+++|++|++++|++....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4567777777763 443332 6777888888877776677777777788888888777655555667777777777777
Q ss_pred CcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739 116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG 192 (477)
Q Consensus 116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 192 (477)
|++++..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 7777655556677777777777777775 556666777777777777777766555556666666666666666653
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=4.1e-19 Score=157.57 Aligned_cols=153 Identities=16% Similarity=0.251 Sum_probs=105.2
Q ss_pred CCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCE
Q 038739 55 GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKL 134 (477)
Q Consensus 55 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 134 (477)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55667777777777776 444 56677777777777776532 245677777777777777777666667777777777
Q ss_pred EEccCCCCcccCCccccCCCCCcEEECCCCc-CCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCc
Q 038739 135 LDLRSCGFWGKVPHSIGNFTQLQYLHLGSNN-FSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNS 213 (477)
Q Consensus 135 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 213 (477)
|++++|.+++..+..+..+++|++|++++|. ++. ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 7777777766666677777777777777776 543 33 566777777777777777642 2 56677777777777776
Q ss_pred Cc
Q 038739 214 YR 215 (477)
Q Consensus 214 l~ 215 (477)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=5.7e-19 Score=164.01 Aligned_cols=168 Identities=21% Similarity=0.301 Sum_probs=92.3
Q ss_pred CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739 9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88 (477)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 88 (477)
+.+++.++++++.+++ ++ .+..+++|++|++++|+++.. + .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 3445555666666653 22 455666666666666666532 3 45666666666666666653322 56666666666
Q ss_pred CcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168 (477)
Q Consensus 89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 168 (477)
+++|++++ ++. +.. ++|++|++++|++++ ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|.+++
T Consensus 92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 66666643 222 222 566666666666653 22 355555666666666655433 2 35555555555555555554
Q ss_pred cCCcCCCCCCCCCEEEccCCccc
Q 038739 169 DLLGPIGNLRSLEAINVAKCNFS 191 (477)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~n~l~ 191 (477)
. ..+..+++|+.|++++|.++
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCCccc
Confidence 3 34445555555555555554
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.1e-18 Score=161.98 Aligned_cols=170 Identities=20% Similarity=0.262 Sum_probs=118.7
Q ss_pred CCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEE
Q 038739 32 NLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL 111 (477)
Q Consensus 32 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 111 (477)
.+.+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3456677788888887543 5778888888888888887 444 67788888888888888865543 7888888888
Q ss_pred EccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccc
Q 038739 112 DLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFS 191 (477)
Q Consensus 112 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 191 (477)
++++|++++ +|.. .. ++|++|++++|.+++. ..+..+++|++|++++|.+++. + .+..+++|++|++++|.++
T Consensus 91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 888888874 4432 22 7777888877777553 3466777777777777777653 2 4566666777777776666
Q ss_pred cccchhhhcCCCCCEEeCcCCcCcc
Q 038739 192 GQITSSLRNLSQLTALDLAQNSYRG 216 (477)
Q Consensus 192 ~~~~~~l~~l~~L~~L~L~~n~l~~ 216 (477)
+. ..+..+++|+.|++++|.+.+
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ch--HHhccCCCCCEEeCCCCcccC
Confidence 44 445566666666666665543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1.2e-20 Score=193.72 Aligned_cols=198 Identities=15% Similarity=0.151 Sum_probs=115.1
Q ss_pred cCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCc-------------CcccCCcccCCCCCCCEEe-CcCCCCCC
Q 038739 31 GNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR-------------FFGELPISMGNLGSLKVLD-LSQNGYFG 96 (477)
Q Consensus 31 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~n~l~~ 96 (477)
..+++|+.|+|++|+++ .+|..++++++|++|++++|. ..+..|..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34455555555555554 344455555555555554432 2334444455555555555 33332210
Q ss_pred cccc------cccC--CCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739 97 ELPT------SIRN--LFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168 (477)
Q Consensus 97 ~~~~------~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 168 (477)
++. .+.. ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 000 0000 1246777777777764 554 667777777777777775 566677777777777777777775
Q ss_pred cCCcCCCCCCCCCEEEccCCcccccc-chhhhcCCCCCEEeCcCCcCccccchh-hhhcCCCCCCEEeC
Q 038739 169 DLLGPIGNLRSLEAINVAKCNFSGQI-TSSLRNLSQLTALDLAQNSYRGMIELD-VLLTSWKNLEFLGL 235 (477)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~l 235 (477)
+| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+.+.++.. .....+++|+.|++
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 34 6677777777777777777655 677777777777777777777655422 12344677777753
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=3e-18 Score=164.69 Aligned_cols=220 Identities=11% Similarity=0.075 Sum_probs=119.1
Q ss_pred CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCC----CcccCCccccCCCCC
Q 038739 81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCG----FWGKVPHSIGNFTQL 156 (477)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----~~~~~~~~l~~l~~L 156 (477)
+++|+.|++.+ .++...+.+|.+|++|+++++++|.+....+..|..+.++..+....+. .......+|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666665 5544444556666666666666665554455555555544444443311 111122234444444
Q ss_pred c-EEECCCCcC-CCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEe
Q 038739 157 Q-YLHLGSNNF-SGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLG 234 (477)
Q Consensus 157 ~-~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 234 (477)
+ .+.+..... .......-....+++.+.+.++-...........+++|+.+++++|.+..+.... |..+++|+.++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a--F~~~~~L~~l~ 256 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT--FAQKKYLLKIK 256 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT--TTTCTTCCEEE
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh--hhCCCCCCEEE
Confidence 4 333322110 0000000012334445554443221111111223777888888877777665554 77777888888
Q ss_pred CCCCCCccccccCCccCcCccc-EEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEE
Q 038739 235 LSLNRLSVLTKATSDTTSQKLK-YIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFN 308 (477)
Q Consensus 235 ls~n~i~~~~~~~~~~~~~~L~-~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~ 308 (477)
+.+| +..++...+. .+.+|+ .+++.+ .++.++ .+|.+|++|+.+++++|+++...+..|. .+++|+.++
T Consensus 257 l~~n-i~~I~~~aF~-~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~--~~~~L~~ly 327 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFS-NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG--NGVPSKLIY 327 (329)
T ss_dssp CCTT-CCEECTTTTT-TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC--TTCCCCEEE
T ss_pred CCcc-cceehHHHhh-CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc--CCcchhhhc
Confidence 8776 5555554433 456677 777777 666664 6677788888888877777766666666 677777765
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=4e-17 Score=144.00 Aligned_cols=129 Identities=26% Similarity=0.257 Sum_probs=82.1
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccc-cCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPI-SIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 91 (477)
++++++++.++ .+|..+.. +|++|++++|++++..+. .|..+++|++|++++|++++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777765 45544432 667777777776655443 366666677777777766666666666666666666666
Q ss_pred CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc
Q 038739 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG 144 (477)
Q Consensus 92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 144 (477)
|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 66666555556666666666666666666556666666666666666665543
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=4.2e-20 Score=189.77 Aligned_cols=196 Identities=17% Similarity=0.174 Sum_probs=106.4
Q ss_pred CCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCC-------------CCCcccccccCCCCccEEE-ccCCcCcC
Q 038739 55 GNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG-------------YFGELPTSIRNLFSLEKLD-LSFNNFSG 120 (477)
Q Consensus 55 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~ 120 (477)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 44566666666666665 556666666666666665443 3344455555555555555 34332210
Q ss_pred CCCc------ccc--CCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCcccc
Q 038739 121 EFPW------STG--NFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSG 192 (477)
Q Consensus 121 ~~~~------~~~--~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 192 (477)
++. .+. ....|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 000 000 01236666666666644 344 666666666666666666 455566666666666666666664
Q ss_pred ccchhhhcCCCCCEEeCcCCcCcccc-chhhhhcCCCCCCEEeCCCCCCccccccCCcc--CcCcccEEE
Q 038739 193 QITSSLRNLSQLTALDLAQNSYRGMI-ELDVLLTSWKNLEFLGLSLNRLSVLTKATSDT--TSQKLKYIG 259 (477)
Q Consensus 193 ~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~--~~~~L~~L~ 259 (477)
+| .+..+++|+.|++++|.+++.. +.. +..+++|+.|++++|.++..+...... .+++|+.|+
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~--l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQP--LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGG--GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHH--HhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 34 5666666666666666666554 333 556666666666666554443322211 345565554
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=2.1e-17 Score=142.48 Aligned_cols=131 Identities=26% Similarity=0.209 Sum_probs=63.5
Q ss_pred CCCCEEEccCCCCC-CCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739 10 SKLLHLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88 (477)
Q Consensus 10 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 88 (477)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 34444445555555555555555443 3445555555555555555543444444455555555
Q ss_pred CcCCCCCCcc-cccccCCCCccEEEccCCcCcCCCC---ccccCCCCCCEEEccCCCC
Q 038739 89 LSQNGYFGEL-PTSIRNLFSLEKLDLSFNNFSGEFP---WSTGNFSSLKLLDLRSCGF 142 (477)
Q Consensus 89 Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~~ 142 (477)
+++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555553321 1344445555555555555543222 2344444444444444443
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.5e-17 Score=159.84 Aligned_cols=242 Identities=14% Similarity=0.075 Sum_probs=144.3
Q ss_pred CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCC--------CCCCCEEecccCcCcccCCcccCC
Q 038739 9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGN--------LSSLKELDLSQNRFFGELPISMGN 80 (477)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~ 80 (477)
+++|++|||++|.+... ...-..++.++.+.+..|.+ .+.+|.+ +++|++|++.+ .++...+.+|.+
T Consensus 48 l~~L~~LdLs~n~i~~~-~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY-SGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCE-EESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEe-cCcccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 78899999999998711 10111122234444444422 2244555 66777777766 555555556666
Q ss_pred CCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcC----cCCCCccccCCCCC------------------------
Q 038739 81 LGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNF----SGEFPWSTGNFSSL------------------------ 132 (477)
Q Consensus 81 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L------------------------ 132 (477)
+++|+.+++++|.+....+.+|..+.++.++....+.. .......|.++..|
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 77777777776666555555666666666665544221 11112223233333
Q ss_pred --CEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCC-EEeC
Q 038739 133 --KLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLT-ALDL 209 (477)
Q Consensus 133 --~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~L 209 (477)
+.+.+.++-...........+++|+.+++++|.++......|.+|++|+.+++.+| ++.....+|.++++|+ .+++
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence 33333332111111011123678888888888887777777888888888888877 6656667788888888 8888
Q ss_pred cCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEc
Q 038739 210 AQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGL 260 (477)
Q Consensus 210 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L 260 (477)
.+ .+..+.+.. |..|++|+.+++++|.++.++...+. .+++|+.++.
T Consensus 282 ~~-~l~~I~~~a--F~~c~~L~~l~l~~n~i~~I~~~aF~-~~~~L~~ly~ 328 (329)
T 3sb4_A 282 PA-SVTAIEFGA--FMGCDNLRYVLATGDKITTLGDELFG-NGVPSKLIYK 328 (329)
T ss_dssp CT-TCCEECTTT--TTTCTTEEEEEECSSCCCEECTTTTC-TTCCCCEEEC
T ss_pred cc-cceEEchhh--hhCCccCCEEEeCCCccCccchhhhc-CCcchhhhcc
Confidence 77 565555444 78888888888888877777665544 3567777653
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=1.6e-18 Score=183.40 Aligned_cols=191 Identities=20% Similarity=0.193 Sum_probs=99.6
Q ss_pred CCCCEEEccCCCCCCCccccccCCCCCCE-----EEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739 10 SKLLHLDLSLNELQGELPVSVGNLHSLEE-----LDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL 84 (477)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-----L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 84 (477)
+.++.|+|.+|.+.. .+..+.....|.. ++++.|.+. ..+..+..+++|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 456777887777764 3333322222222 222333333 44566777788888888888776 566666677888
Q ss_pred CEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCC
Q 038739 85 KVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSN 164 (477)
Q Consensus 85 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 164 (477)
++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|..+++|++|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 88888888776 67777777888888888888877 66777777888888888888774 56767777888888888888
Q ss_pred cCCCcCCcCCCCCCC-CCEEEccCCccccccchhhhcCCCCCEEeCcCC
Q 038739 165 NFSGDLLGPIGNLRS-LEAINVAKCNFSGQITSSLRNLSQLTALDLAQN 212 (477)
Q Consensus 165 ~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 212 (477)
.+++.+|..+..+.. ...+++++|.+++.+|. .|+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 877766655543221 12356777777665554 3445555555
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=2.6e-18 Score=181.89 Aligned_cols=194 Identities=23% Similarity=0.226 Sum_probs=123.0
Q ss_pred CCEEEccCCCCCC---------CccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCC
Q 038739 12 LLHLDLSLNELQG---------ELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLG 82 (477)
Q Consensus 12 L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 82 (477)
|+.++|+.+.|.+ ..+..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.++
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 270 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS 270 (727)
T ss_dssp -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT
T ss_pred hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCC
Confidence 4455555554443 45778999999999999999998 56666779999999999999998 8899999999
Q ss_pred CCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCC-CcEEEC
Q 038739 83 SLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQ-LQYLHL 161 (477)
Q Consensus 83 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~-L~~L~l 161 (477)
+|++|+|++|+++ .+|..|..+++|++|+|++|.++ .+|..++.+++|++|+|++|.+++.+|..+..+.. +..+++
T Consensus 271 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l 348 (727)
T 4b8c_D 271 NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYL 348 (727)
T ss_dssp TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhh
Confidence 9999999999997 77999999999999999999998 78888999999999999999999888877754422 234788
Q ss_pred CCCcCCCcCCcCCCCCCCCCEEEccCC--------ccccccchhhhcCCCCCEEeCcCCcCc
Q 038739 162 GSNNFSGDLLGPIGNLRSLEAINVAKC--------NFSGQITSSLRNLSQLTALDLAQNSYR 215 (477)
Q Consensus 162 ~~n~l~~~~~~~l~~l~~L~~L~l~~n--------~l~~~~~~~l~~l~~L~~L~L~~n~l~ 215 (477)
++|.+++.+|. .|+.|+++.| .+.+..+..+..+..+....+++|.+.
T Consensus 349 ~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 349 RDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred ccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 99999887665 4556666666 233333334445555566666666654
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=1.7e-17 Score=140.01 Aligned_cols=126 Identities=26% Similarity=0.212 Sum_probs=62.7
Q ss_pred CCCCEEEccCCCCC-CCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739 10 SKLLHLDLSLNELQ-GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88 (477)
Q Consensus 10 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 88 (477)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 44454555555555555555555543 3455555555555555555543444444455555555
Q ss_pred CcCCCCCCc-ccccccCCCCccEEEccCCcCcCCCC---ccccCCCCCCEEEc
Q 038739 89 LSQNGYFGE-LPTSIRNLFSLEKLDLSFNNFSGEFP---WSTGNFSSLKLLDL 137 (477)
Q Consensus 89 Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L 137 (477)
+++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555555432 22444455555555555555543322 23444444444444
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.8e-16 Score=139.80 Aligned_cols=128 Identities=25% Similarity=0.233 Sum_probs=76.3
Q ss_pred CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCc-ccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739 37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPI-SMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF 115 (477)
Q Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 115 (477)
+++++++|+++ .+|..+. .+|++|++++|++++..+. .|..+++|++|++++|++++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56667666665 3443332 2666666666666544433 356666666666666666655566666666666666666
Q ss_pred CcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739 116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167 (477)
Q Consensus 116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 167 (477)
|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 6666555555556666666666666665555555555555555555555554
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=5.5e-17 Score=139.90 Aligned_cols=133 Identities=24% Similarity=0.196 Sum_probs=89.6
Q ss_pred CCCCCEEEcccccCC-ccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEE
Q 038739 33 LHSLEELDLSANFLS-SEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL 111 (477)
Q Consensus 33 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 111 (477)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367777777777776 55666667777777777777777644 566777777777777777766566666667777777
Q ss_pred EccCCcCcCCC-CccccCCCCCCEEEccCCCCcccCC---ccccCCCCCcEEECCCCcCC
Q 038739 112 DLSFNNFSGEF-PWSTGNFSSLKLLDLRSCGFWGKVP---HSIGNFTQLQYLHLGSNNFS 167 (477)
Q Consensus 112 ~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~ 167 (477)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777776421 1456666677777777776654433 35666666666666666554
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=2e-15 Score=148.32 Aligned_cols=265 Identities=11% Similarity=0.057 Sum_probs=199.8
Q ss_pred CCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEe
Q 038739 9 LSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLD 88 (477)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 88 (477)
+..++.+.+.+ .++.....+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+......+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 46677777765 3555566678775 7999998776 776767788885 699999976 56656677889999999999
Q ss_pred CcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCC
Q 038739 89 LSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSG 168 (477)
Q Consensus 89 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 168 (477)
+++|+++.....+|. +.+|+.+.+..+ ++......|.++++|+.+++..+ +......+|.+ .+|+.+.+. +.++.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 998888655555666 689999999854 66566778889999999999864 55555567777 789999994 45666
Q ss_pred cCCcCCCCCCCCCEEEccCCccc-----cccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccc
Q 038739 169 DLLGPIGNLRSLEAINVAKCNFS-----GQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVL 243 (477)
Q Consensus 169 ~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~ 243 (477)
....+|..|++|+.+++.++.+. ......|.+|++|+.+++.+ .+..+.... |.+|++|+.+++..+ ++.+
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a--F~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL--LGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT--TTTCCSCCEEEECTT-CCEE
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh--hcCCCCccEEEECcc-ccEE
Confidence 66778899999999999887664 35567888999999999984 466555444 888999999999655 5666
Q ss_pred cccCCccCcCcccEEEccCCCCCCcc-hhhhcCC-CcCEEeccCCccc
Q 038739 244 TKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQH-HLRFMDLSDNRIQ 289 (477)
Q Consensus 244 ~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~-~L~~L~Ls~n~i~ 289 (477)
+...+. .+ +|+.+++.+|.+..++ ..+..++ +++.|.+..+.+.
T Consensus 338 ~~~aF~-~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 338 NFSAFN-NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTTSSS-SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cHHhCC-CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 555544 35 8999999999887664 4566664 7888988877654
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=4.8e-17 Score=137.30 Aligned_cols=128 Identities=23% Similarity=0.169 Sum_probs=86.0
Q ss_pred CCCCCEEEcccccCC-ccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEE
Q 038739 33 LHSLEELDLSANFLS-SEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKL 111 (477)
Q Consensus 33 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 111 (477)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777776 56666667777777777777777644 566777777777777777766566666667777777
Q ss_pred EccCCcCcCC-CCccccCCCCCCEEEccCCCCcccCC---ccccCCCCCcEEECC
Q 038739 112 DLSFNNFSGE-FPWSTGNFSSLKLLDLRSCGFWGKVP---HSIGNFTQLQYLHLG 162 (477)
Q Consensus 112 ~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~ 162 (477)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777642 23556666667777777666655443 355666666666654
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=5.7e-15 Score=145.12 Aligned_cols=268 Identities=9% Similarity=0.078 Sum_probs=212.3
Q ss_pred ccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCcc
Q 038739 30 VGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLE 109 (477)
Q Consensus 30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 109 (477)
+..+..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+++.. .+......+|.+|++|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 344578999999764 676777889886 7999999876 665667788885 799999986 67666668899999999
Q ss_pred EEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCc
Q 038739 110 KLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCN 189 (477)
Q Consensus 110 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 189 (477)
.+++++|.++......|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 999999999855555565 689999999854 66667788999999999999875 55566667777 789999995 45
Q ss_pred cccccchhhhcCCCCCEEeCcCCcCc-----cccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCC
Q 038739 190 FSGQITSSLRNLSQLTALDLAQNSYR-----GMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCN 264 (477)
Q Consensus 190 l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~ 264 (477)
++.....+|.+|++|+.+++.++.+. ..... .|..|++|+.+++.. .+..++...+. .+.+|+.+.+.++
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~~-~i~~I~~~aF~-~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIPE-SIRILGQGLLG-GNRKVTQLTIPAN- 333 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCCT-TCCEECTTTTT-TCCSCCEEEECTT-
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeCC-ceEEEhhhhhc-CCCCccEEEECcc-
Confidence 66566789999999999999988765 23333 489999999999994 46766665543 5779999999654
Q ss_pred CCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCC-CCCeEEecCCccc
Q 038739 265 LTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQ-NLNGFNFSHNLLT 315 (477)
Q Consensus 265 l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~-~L~~L~Ls~N~l~ 315 (477)
++.++ .+|.+| +|+.+++++|.+.......|. .++ .++.|.+..+.+.
T Consensus 334 l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~--~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 334 VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY--GFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC--CSCTTCCEEEECGGGHH
T ss_pred ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc--CCCCCccEEEeCHHHHH
Confidence 77774 678889 999999999988866666665 564 7899999887765
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=6.3e-16 Score=136.33 Aligned_cols=126 Identities=27% Similarity=0.231 Sum_probs=65.5
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN 92 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 92 (477)
++++++++.++ .+|..+. ++|++|++++|+++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45555655555 3343332 35555555555555 33445555555555555555555444455555555555555555
Q ss_pred CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCC
Q 038739 93 GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGF 142 (477)
Q Consensus 93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 142 (477)
++++..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55544444555555555555555555533333444444555555544444
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=9e-16 Score=133.44 Aligned_cols=130 Identities=22% Similarity=0.157 Sum_probs=80.6
Q ss_pred CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739 12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91 (477)
Q Consensus 12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 91 (477)
.+.++++++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456777777666 334332 25677777777777665555566667777777777766655555566666667777766
Q ss_pred CCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc
Q 038739 92 NGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG 144 (477)
Q Consensus 92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 144 (477)
|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 66665555556666666666666666664444444556666666666665544
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=133.79 Aligned_cols=126 Identities=26% Similarity=0.303 Sum_probs=71.1
Q ss_pred CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCC
Q 038739 37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFN 116 (477)
Q Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 116 (477)
+++++++|.++. +|..+. ++|++|++++|.++ .+|..|.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456666666653 333322 45666666666665 45555666666666666666665555555666666666666666
Q ss_pred cCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcC
Q 038739 117 NFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNF 166 (477)
Q Consensus 117 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 166 (477)
++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 66655555555555555555555555444434455555555555555544
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=3.7e-15 Score=129.52 Aligned_cols=129 Identities=24% Similarity=0.167 Sum_probs=66.9
Q ss_pred CCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739 36 LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF 115 (477)
Q Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 115 (477)
.+.+++++++++. +|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3556666666553 23222 24566666666666544444455566666666666665544444455555555555555
Q ss_pred CcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCC
Q 038739 116 NNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFS 167 (477)
Q Consensus 116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 167 (477)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555444444445555555555555554333333344444444444444443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=6.2e-16 Score=134.33 Aligned_cols=131 Identities=21% Similarity=0.169 Sum_probs=74.2
Q ss_pred CCCCCCCCEEEccCCCCCCCccccccCCC-CCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCC
Q 038739 6 LGNLSKLLHLDLSLNELQGELPVSVGNLH-SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSL 84 (477)
Q Consensus 6 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 84 (477)
+.++++|++|++++|.++. ++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4456666666666666663 332 33333 666666666666643 456666666666666666664433334566666
Q ss_pred CEEeCcCCCCCCcccc--cccCCCCccEEEccCCcCcCCCCcc----ccCCCCCCEEEccCCCC
Q 038739 85 KVLDLSQNGYFGELPT--SIRNLFSLEKLDLSFNNFSGEFPWS----TGNFSSLKLLDLRSCGF 142 (477)
Q Consensus 85 ~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~~ 142 (477)
++|++++|++. .+|. .+..+++|++|++++|.++ .+|.. +..+++|+.|++++|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666663 3333 5556666666666666665 33332 45555555555555543
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=3.5e-14 Score=139.77 Aligned_cols=153 Identities=10% Similarity=-0.063 Sum_probs=62.6
Q ss_pred ccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCC
Q 038739 28 VSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFS 107 (477)
Q Consensus 28 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 107 (477)
.+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++..-..+|.++.+|+.+.+..+ +......+|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 34555555555555432 44344445555555555555433 33233344555555555444332 22222233333332
Q ss_pred ccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccC
Q 038739 108 LEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAK 187 (477)
Q Consensus 108 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 187 (477)
++....... .......|.++++|+.+.+.++. ......+|.++.+|+.+.+..+ ++......+.++..|+.+.+..
T Consensus 142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 222221111 11222344444455555544321 1222334444445555544433 2222333444444444444433
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=1.6e-15 Score=131.66 Aligned_cols=108 Identities=21% Similarity=0.119 Sum_probs=57.4
Q ss_pred ccCCCCCCEEEcccccCCccccccCCCC-CCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCc
Q 038739 30 VGNLHSLEELDLSANFLSSEWPISIGNL-SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSL 108 (477)
Q Consensus 30 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 108 (477)
+.++++|++|++++|+++.. +. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45566666666666666633 32 3333 3666666666666543 455556666666666666544333334555555
Q ss_pred cEEEccCCcCcCCCCc--cccCCCCCCEEEccCCCC
Q 038739 109 EKLDLSFNNFSGEFPW--STGNFSSLKLLDLRSCGF 142 (477)
Q Consensus 109 ~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~~ 142 (477)
++|++++|.++ .+|. .+..+++|+.|++++|.+
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence 55555555554 3332 344444455555544444
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=6.1e-18 Score=150.11 Aligned_cols=134 Identities=21% Similarity=0.221 Sum_probs=84.0
Q ss_pred CCCCCCEEEccCCCCCCCccc------cccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739 8 NLSKLLHLDLSLNELQGELPV------SVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNL 81 (477)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 81 (477)
..+.++.++++.+.+++..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 345566666666666665554 66777777777777777765 44 6666777777777777766 455555556
Q ss_pred CCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCC-ccccCCCCCCEEEccCCCCcccC
Q 038739 82 GSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFP-WSTGNFSSLKLLDLRSCGFWGKV 146 (477)
Q Consensus 82 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~ 146 (477)
++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 677777777776654 33 45666667777777766663211 24555666666666666654443
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=4e-13 Score=132.25 Aligned_cols=317 Identities=9% Similarity=0.020 Sum_probs=141.5
Q ss_pred CCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCcc
Q 038739 46 LSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWS 125 (477)
Q Consensus 46 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 125 (477)
++.+...+|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ +.......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 33344455666666666666432 44344455666666666666543 33333345555666665555433 22233334
Q ss_pred ccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCC
Q 038739 126 TGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLT 205 (477)
Q Consensus 126 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 205 (477)
|.++..++...... .......+|.++++|+.+.+..+. .......|..+.+|+.+.+..+ ++......+.++..|+
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 44443222222221 112223455566666666665432 2233445555666666665544 3323344555555665
Q ss_pred EEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcchhhhcCCCcCEEeccC
Q 038739 206 ALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFPNFLQNQHHLRFMDLSD 285 (477)
Q Consensus 206 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p~~l~~~~~L~~L~Ls~ 285 (477)
.+.+..+...- .. ......+|+.+.+... +..++...+ ..+..++.+.+..+...--...+..+..++.+....
T Consensus 212 ~i~~~~~~~~i-~~---~~~~~~~l~~i~ip~~-~~~i~~~~f-~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 212 NMEFPNSLYYL-GD---FALSKTGVKNIIIPDS-FTELGKSVF-YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp BCCCCTTCCEE-CT---TTTTTCCCCEEEECTT-CCEECSSTT-TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECS
T ss_pred eeecCCCceEe-eh---hhcccCCCceEEECCC-ceecccccc-cccccceeEEcCCCcceeeccccccccccceeccCc
Confidence 55554443211 00 1222345555555432 122222111 134455555555443221223445555555555544
Q ss_pred CcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCCCCCCCCCCccceeecCCCcCccCCChhhhccCCCCeE
Q 038739 286 NRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNKGPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESL 365 (477)
Q Consensus 286 n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~L 365 (477)
+.+.+ ..+. .+.+|+.+.+..+ ++.+.... .....+|+.+++.++ ++..-...|.++++|+.+
T Consensus 286 ~~i~~---~~F~--~~~~L~~i~l~~~-i~~I~~~a----------F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 286 VIVPE---KTFY--GCSSLTEVKLLDS-VKFIGEEA----------FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp SEECT---TTTT--TCTTCCEEEECTT-CCEECTTT----------TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred eeecc---cccc--ccccccccccccc-cceechhh----------hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence 43221 1222 4555555555432 22221111 122334555554322 333334455566666666
Q ss_pred eCCCCcCcccCCchhhhcccccceeecCC
Q 038739 366 VLSHNNLSGLLPQCLGNFSDELLVLDLQG 394 (477)
Q Consensus 366 dLs~N~l~~~~p~~l~~l~~~L~~L~Ls~ 394 (477)
++..+ ++..-..+|.... +|+.+++..
T Consensus 349 ~lp~~-l~~I~~~aF~~C~-~L~~i~lp~ 375 (394)
T 4fs7_A 349 NFPLS-LRKIGANAFQGCI-NLKKVELPK 375 (394)
T ss_dssp CCCTT-CCEECTTTBTTCT-TCCEEEEEG
T ss_pred EECcc-ccEehHHHhhCCC-CCCEEEECC
Confidence 66554 4433344555555 566665543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=7.8e-14 Score=120.20 Aligned_cols=105 Identities=24% Similarity=0.196 Sum_probs=58.7
Q ss_pred CCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739 12 LLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91 (477)
Q Consensus 12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 91 (477)
.+++++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 355666666665 3443332 5566666666666655555555666666666666665544444455555555555555
Q ss_pred CCCCCcccccccCCCCccEEEccCCcCc
Q 038739 92 NGYFGELPTSIRNLFSLEKLDLSFNNFS 119 (477)
Q Consensus 92 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 119 (477)
|++++..+..|..+++|++|++++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555444444555555555555555554
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.5e-13 Score=118.76 Aligned_cols=104 Identities=21% Similarity=0.201 Sum_probs=52.0
Q ss_pred CEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCC
Q 038739 13 LHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQN 92 (477)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 92 (477)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555554 3343332 45555555555555554555555555555555555555433333445555555555555
Q ss_pred CCCCcccccccCCCCccEEEccCCcCc
Q 038739 93 GYFGELPTSIRNLFSLEKLDLSFNNFS 119 (477)
Q Consensus 93 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 119 (477)
++++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 554333333444555555555555444
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=6.7e-17 Score=143.35 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=57.1
Q ss_pred ccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCC
Q 038739 77 SMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQL 156 (477)
Q Consensus 77 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 156 (477)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 33444444444444444432 23 3444444444444444444 333333334444444444444433 22 34444455
Q ss_pred cEEECCCCcCCCcCC-cCCCCCCCCCEEEccCCccccccch----------hhhcCCCCCEEe
Q 038739 157 QYLHLGSNNFSGDLL-GPIGNLRSLEAINVAKCNFSGQITS----------SLRNLSQLTALD 208 (477)
Q Consensus 157 ~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~----------~l~~l~~L~~L~ 208 (477)
++|++++|.+++... ..+..+++|++|++++|.+++..|. .+..+++|+.|+
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 555555555543211 2344455555555555555433322 245555666554
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=3.5e-13 Score=116.04 Aligned_cols=105 Identities=24% Similarity=0.146 Sum_probs=60.0
Q ss_pred CCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccC
Q 038739 36 LEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSF 115 (477)
Q Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 115 (477)
.+++++++|.++. +|..+ .++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3566666666653 33333 25566666666666655555566666666666666666555444555666666666666
Q ss_pred CcCcCCCCccccCCCCCCEEEccCCCCc
Q 038739 116 NNFSGEFPWSTGNFSSLKLLDLRSCGFW 143 (477)
Q Consensus 116 n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 143 (477)
|++++..+..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6665444444555555555555555553
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.46 E-value=1.4e-11 Score=121.03 Aligned_cols=294 Identities=11% Similarity=0.060 Sum_probs=169.6
Q ss_pred ccCCCCC-CCCEEEccCCCCCCCccccccCCCCCCEEEccccc---CCccccccCCCCCCCCEEecccCcCcccCCcccC
Q 038739 4 SSLGNLS-KLLHLDLSLNELQGELPVSVGNLHSLEELDLSANF---LSSEWPISIGNLSSLKELDLSQNRFFGELPISMG 79 (477)
Q Consensus 4 ~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 79 (477)
.+|.+++ .|+.+.+-.+ ++.....+|.+|.+|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++.....+|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3567774 5888888754 665667788889999999888763 66555677888888888887655 4445566788
Q ss_pred CCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEE
Q 038739 80 NLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYL 159 (477)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 159 (477)
.+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++......|. ...|+.+.+..+- ......+|..+.+++..
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcc-cccccchhhhcccccee
Confidence 8888998888754 33444567888888888888765 3423334444 3678888876542 23344566677777766
Q ss_pred ECCCCcCCCcCCcC-------------CCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcC
Q 038739 160 HLGSNNFSGDLLGP-------------IGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTS 226 (477)
Q Consensus 160 ~l~~n~l~~~~~~~-------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 226 (477)
....+......... +.....+..+.+.. .++.....+|.++..|+.+.+..+.. ..... .+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~--aF~~ 286 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTG--AFMN 286 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTT--TTTT
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc-eecCc--cccc
Confidence 65544322110000 01112233333322 12222334566666666666654432 12222 2556
Q ss_pred CCCCCEEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCC
Q 038739 227 WKNLEFLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLN 305 (477)
Q Consensus 227 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~ 305 (477)
+++|+.+.+.. .+..++...+. .+.+|+.+.+..+ ++.+. .+|.+|.+|+.+.+..+ ++......|. .|.+|+
T Consensus 287 c~~L~~i~l~~-~i~~I~~~aF~-~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~--~C~~L~ 360 (394)
T 4gt6_A 287 CPALQDIEFSS-RITELPESVFA-GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS--NCTALN 360 (394)
T ss_dssp CTTCCEEECCT-TCCEECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT--TCTTCC
T ss_pred ccccccccCCC-cccccCceeec-CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh--CCCCCC
Confidence 66666666643 23334333322 3556666666543 44443 45666666666666543 4423333444 566666
Q ss_pred eEEecCCc
Q 038739 306 GFNFSHNL 313 (477)
Q Consensus 306 ~L~Ls~N~ 313 (477)
.+++.++.
T Consensus 361 ~i~~~~~~ 368 (394)
T 4gt6_A 361 NIEYSGSR 368 (394)
T ss_dssp EEEESSCH
T ss_pred EEEECCce
Confidence 66666654
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=6.8e-13 Score=114.64 Aligned_cols=103 Identities=20% Similarity=0.148 Sum_probs=54.3
Q ss_pred CEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCCCCCcccccccCCCCccEEEccCC
Q 038739 37 EELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFN 116 (477)
Q Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 116 (477)
+.+++++|+++ .+|..+. ++|++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666654 3333332 55566666666655555555555555555555555555444444455555555555555
Q ss_pred cCcCCCCccccCCCCCCEEEccCCCC
Q 038739 117 NFSGEFPWSTGNFSSLKLLDLRSCGF 142 (477)
Q Consensus 117 ~l~~~~~~~~~~l~~L~~L~L~~n~~ 142 (477)
++++..+..+..+++|++|++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 55533333344555555555555544
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=5.1e-11 Score=117.14 Aligned_cols=317 Identities=11% Similarity=0.069 Sum_probs=178.1
Q ss_pred cccccCCC-CCCEEEcccccCCccccccCCCCCCCCEEecccCc---CcccCCcccCCCCCCCEEeCcCCCCCCcccccc
Q 038739 27 PVSVGNLH-SLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR---FFGELPISMGNLGSLKVLDLSQNGYFGELPTSI 102 (477)
Q Consensus 27 ~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 102 (477)
..+|.+++ .|+.+.+..+ ++.+...+|.++.+|+.+.+..|. ++..-..+|.++.+|+.+.+..+ ++.....+|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 44577774 5888888764 666677788888899988887763 55445567888888888877654 444445677
Q ss_pred cCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccccCCCCCcEEECCCCcCCCcCCcCCCCCCCCCE
Q 038739 103 RNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSIGNFTQLQYLHLGSNNFSGDLLGPIGNLRSLEA 182 (477)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 182 (477)
..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +......+|.. ..|+.+.+..+-. ......+..+..++.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccce
Confidence 88888888888654 33355567778888888888654 33333445543 5688888765432 244556777777777
Q ss_pred EEccCCccccccchhh-------------hcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeCCCCCCccccccCCc
Q 038739 183 INVAKCNFSGQITSSL-------------RNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGLSLNRLSVLTKATSD 249 (477)
Q Consensus 183 L~l~~n~l~~~~~~~l-------------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~ 249 (477)
...............+ .....+..+.+... +...... .|..+..|+.+.+..+. ..++...+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~--aF~~c~~L~~i~lp~~~-~~I~~~aF- 284 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETH--AFDSCAYLASVKMPDSV-VSIGTGAF- 284 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTT--TTTTCSSCCEEECCTTC-CEECTTTT-
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccc--eeeecccccEEeccccc-ceecCccc-
Confidence 7665543321110001 11122333333221 1111111 26666777777775542 22222222
Q ss_pred cCcCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCcccccCCCCcccCCCC
Q 038739 250 TTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLTGFDQHPVVLPGNK 328 (477)
Q Consensus 250 ~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~n~ 328 (477)
..+..|+.+.+. +.++.++ .+|.+|.+|+.+++..+ ++......|. .|.+|+.+.+..+
T Consensus 285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~--~C~~L~~i~ip~s---------------- 344 (394)
T 4gt6_A 285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA--GCEQLERIAIPSS---------------- 344 (394)
T ss_dssp TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCEEEECTT----------------
T ss_pred ccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh--CCCCCCEEEECcc----------------
Confidence 145566666664 3445554 45666666777666543 3333333444 5666666666432
Q ss_pred CCCCCCCCccceeecCCCcCccCCChhhhccCCCCeEeCCCCcCcccCCchhhhcccccceeecCCCcC
Q 038739 329 GPLPVPPPGTITYLASNNSLTGEIPSWICNLNILESLVLSHNNLSGLLPQCLGNFSDELLVLDLQGNNL 397 (477)
Q Consensus 329 ~~~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~l~~l~~~L~~L~Ls~N~l 397 (477)
++..-...|.++++|+.+++.++.... ..+.... .|+.+.+..|.+
T Consensus 345 -------------------v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~-~L~~i~i~~~~~ 390 (394)
T 4gt6_A 345 -------------------VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDS-GLQNLPVAPGSI 390 (394)
T ss_dssp -------------------CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCC-CC----------
T ss_pred -------------------cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccC-CCCEEEeCCCCE
Confidence 222224567788888888888775431 2344444 677776665543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=1.8e-14 Score=140.16 Aligned_cols=167 Identities=19% Similarity=0.172 Sum_probs=101.2
Q ss_pred CCCCEEEcccccCCccccccC----C-CCCCCCEEecccCcCcccCCccc-CCCCCCCEEeCcCCCCCCcccccc-----
Q 038739 34 HSLEELDLSANFLSSEWPISI----G-NLSSLKELDLSQNRFFGELPISM-GNLGSLKVLDLSQNGYFGELPTSI----- 102 (477)
Q Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~----~-~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l----- 102 (477)
++|++|++++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 466777777777664333222 2 22567777777777653322222 234567777777777754333332
Q ss_pred cCCCCccEEEccCCcCcCC----CCccccCCCCCCEEEccCCCCccc----CCccccCCCCCcEEECCCCcCCCc----C
Q 038739 103 RNLFSLEKLDLSFNNFSGE----FPWSTGNFSSLKLLDLRSCGFWGK----VPHSIGNFTQLQYLHLGSNNFSGD----L 170 (477)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~ 170 (477)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+... ++..+...++|++|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2456777777777777532 333345667777888877777543 234556667788888888887653 2
Q ss_pred CcCCCCCCCCCEEEccCCccccccchhhhc
Q 038739 171 LGPIGNLRSLEAINVAKCNFSGQITSSLRN 200 (477)
Q Consensus 171 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 200 (477)
...+...++|++|++++|.+++.....+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 233445677888888888887655555544
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=4.5e-14 Score=137.34 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=47.6
Q ss_pred CCCCEEecccCcCcccCCccc----C-CCCCCCEEeCcCCCCCCcccccc-cCCCCccEEEccCCcCcCCCCccc-----
Q 038739 58 SSLKELDLSQNRFFGELPISM----G-NLGSLKVLDLSQNGYFGELPTSI-RNLFSLEKLDLSFNNFSGEFPWST----- 126 (477)
Q Consensus 58 ~~L~~L~Ls~n~l~~~~~~~~----~-~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~----- 126 (477)
++|++|++++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 455666666665543222221 1 12456666666665533222111 123355555555555542222121
Q ss_pred cCCCCCCEEEccCCCCccc----CCccccCCCCCcEEECCCCcCC
Q 038739 127 GNFSSLKLLDLRSCGFWGK----VPHSIGNFTQLQYLHLGSNNFS 167 (477)
Q Consensus 127 ~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 167 (477)
...++|++|+|++|.++.. ++..+..+++|++|++++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 1234455555555554321 1222234444555555554443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=8.3e-12 Score=120.57 Aligned_cols=104 Identities=21% Similarity=0.152 Sum_probs=73.2
Q ss_pred CEEEccCC-CCCCCccccccCCCCCCEEEccc-ccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCc
Q 038739 13 LHLDLSLN-ELQGELPVSVGNLHSLEELDLSA-NFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLS 90 (477)
Q Consensus 13 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 90 (477)
..++++++ .++ .+|. +..+++|++|+|++ |++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34577776 676 4565 77777777777775 77776666677777777777777777777777777777777777777
Q ss_pred CCCCCCcccccccCCCCccEEEccCCcCc
Q 038739 91 QNGYFGELPTSIRNLFSLEKLDLSFNNFS 119 (477)
Q Consensus 91 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 119 (477)
+|++++..+..|..++ |++|++++|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7777655555555444 777777777665
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=2.1e-11 Score=117.75 Aligned_cols=94 Identities=22% Similarity=0.117 Sum_probs=85.4
Q ss_pred CCCccCCCCCCCCEEEccC-CCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccC
Q 038739 1 RIPSSLGNLSKLLHLDLSL-NELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMG 79 (477)
Q Consensus 1 ~lp~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 79 (477)
+||. |..+++|++|+|++ |.|++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 4788 99999999999996 999988888999999999999999999999999999999999999999999976666666
Q ss_pred CCCCCCEEeCcCCCCCC
Q 038739 80 NLGSLKVLDLSQNGYFG 96 (477)
Q Consensus 80 ~l~~L~~L~Ls~n~l~~ 96 (477)
.++ |++|++.+|.+..
T Consensus 102 ~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCC-CCEEECCSSCCCC
T ss_pred cCC-ceEEEeeCCCccC
Confidence 665 9999999999864
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.17 E-value=6.2e-09 Score=101.57 Aligned_cols=286 Identities=7% Similarity=0.021 Sum_probs=126.2
Q ss_pred CCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEE
Q 038739 8 NLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVL 87 (477)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 87 (477)
...+|+.+.+.. .++.....+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++.....+|... +|+.+
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence 334455555542 233333444555555555555432 443444445554 3555544332 222223333332 45555
Q ss_pred eCcCCCCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcc------------cCCccccCCCC
Q 038739 88 DLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWG------------KVPHSIGNFTQ 155 (477)
Q Consensus 88 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~------------~~~~~l~~l~~ 155 (477)
++..+ ++.....+|.++ +|+.+.+..+ ++......+..+..++...+..+.... .....+.....
T Consensus 119 ~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT 195 (379)
T ss_dssp ECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred cCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence 55443 212222233332 3444443322 222333344455555555544322110 01112223333
Q ss_pred CcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCCEEeC
Q 038739 156 LQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLEFLGL 235 (477)
Q Consensus 156 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~l 235 (477)
+..+.+.... .......+..+..|+.+.+..+ +.......+..+..|+.+.+..+ ++...... +..+.+|+.+.+
T Consensus 196 ~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a--F~~~~~l~~i~l 270 (379)
T 4h09_A 196 GTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL--LQNCTALKTLNF 270 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT--TTTCTTCCEEEE
T ss_pred ccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc--cceeehhccccc
Confidence 4444333221 1122334445555666655433 22233445556666666666543 33222222 555666666666
Q ss_pred CCCCCccccccCCccCcCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecC
Q 038739 236 SLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSH 311 (477)
Q Consensus 236 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~ 311 (477)
..+ +..++...+ ..+.+|+.+.+.++.++.++ .+|.+|.+|+.++|..+ ++......|. .|.+|+.+.+..
T Consensus 271 ~~~-i~~i~~~aF-~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~--~C~~L~~i~ip~ 342 (379)
T 4h09_A 271 YAK-VKTVPYLLC-SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK--NCKALSTISYPK 342 (379)
T ss_dssp CCC-CSEECTTTT-TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTTCCCCCCCT
T ss_pred ccc-ceecccccc-ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh--CCCCCCEEEECC
Confidence 543 233322222 13556666666666665554 45566666666666543 3323333444 556666655543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.13 E-value=1.3e-08 Score=99.21 Aligned_cols=278 Identities=13% Similarity=0.041 Sum_probs=190.4
Q ss_pred ccCCCCCCCCEEEccCCCCCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCCcccCCCCC
Q 038739 4 SSLGNLSKLLHLDLSLNELQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGS 83 (477)
Q Consensus 4 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 83 (477)
.+|.+|++|+.+++..+ ++.....+|.++ +|+.+.+..+ ++.+...+|... +|+.+.+..+- +.....+|.++ +
T Consensus 63 ~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~-~~i~~~~F~~~-~ 136 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT-TEIGNYIFYNS-S 136 (379)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC-CEECTTTTTTC-C
T ss_pred HHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc-ccccccccccc-e
Confidence 46899999999999754 665666788887 6888888654 555555667665 79999997653 32444556554 6
Q ss_pred CCEEeCcCCCCCCcccccccCCCCccEEEccCCcCcC------------CCCccccCCCCCCEEEccCCCCcccCCcccc
Q 038739 84 LKVLDLSQNGYFGELPTSIRNLFSLEKLDLSFNNFSG------------EFPWSTGNFSSLKLLDLRSCGFWGKVPHSIG 151 (477)
Q Consensus 84 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 151 (477)
|+.+.+..+ ++......|..+.+++.+.+..+.... .....+.....+..+.+.... .......+.
T Consensus 137 l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~ 214 (379)
T 4h09_A 137 VKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFS 214 (379)
T ss_dssp CCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTT
T ss_pred eeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeecccc
Confidence 777666543 444445677888888888876543321 122234455666666665432 233445677
Q ss_pred CCCCCcEEECCCCcCCCcCCcCCCCCCCCCEEEccCCccccccchhhhcCCCCCEEeCcCCcCccccchhhhhcCCCCCC
Q 038739 152 NFTQLQYLHLGSNNFSGDLLGPIGNLRSLEAINVAKCNFSGQITSSLRNLSQLTALDLAQNSYRGMIELDVLLTSWKNLE 231 (477)
Q Consensus 152 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 231 (477)
.+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++......+.++.+|+.+.+..+ +...... .|..+.+|+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~--aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL--LCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT--TTTTCTTCC
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccc--ccccccccc
Confidence 7888888888754 44455567788899999998765 55455677888999999988654 4433333 388899999
Q ss_pred EEeCCCCCCccccccCCccCcCcccEEEccCCCCCCcc-hhhhcCCCcCEEeccCCcccccCCccCC
Q 038739 232 FLGLSLNRLSVLTKATSDTTSQKLKYIGLRSCNLTKFP-NFLQNQHHLRFMDLSDNRIQGKVPKWLL 297 (477)
Q Consensus 232 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~p-~~l~~~~~L~~L~Ls~n~i~~~~p~~~~ 297 (477)
.+.+.++.++.++...+. .+.+|+.+.+..+ ++.+. .+|.+|.+|+.+.+..+ ++......|.
T Consensus 290 ~i~l~~~~i~~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFM-DCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp EEEECCTTCCEECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred cccccccccceehhhhhc-CCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 999988877777766554 4678999999754 67775 57889999999988755 5433344443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=8e-11 Score=113.53 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=49.4
Q ss_pred CCCCEEEccCCCCCC-Cc-------cccccCCCCCCEEEcccccCC---------ccccccCCCCCCCCEEecccCcCcc
Q 038739 10 SKLLHLDLSLNELQG-EL-------PVSVGNLHSLEELDLSANFLS---------SEWPISIGNLSSLKELDLSQNRFFG 72 (477)
Q Consensus 10 ~~L~~L~L~~n~l~~-~~-------~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l~~ 72 (477)
+.++.|.+......+ .. ..+...+++|+.|.+...... +.+...+..+|+|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 345666666544331 11 223445667777777554221 112233455666666666665211
Q ss_pred cCCcccCCCCCCCEEeCcCCCCCCccccccc--CCCCccEEEcc
Q 038739 73 ELPISMGNLGSLKVLDLSQNGYFGELPTSIR--NLFSLEKLDLS 114 (477)
Q Consensus 73 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls 114 (477)
.++. +. +++|++|++..|.+.......+. .+++|++|+|+
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 1222 22 56666666666655432222222 45666666654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=5.5e-11 Score=114.67 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=111.3
Q ss_pred cCCCCCCCCEEEccCCCCC---------CCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEecccCcCcccCC
Q 038739 5 SLGNLSKLLHLDLSLNELQ---------GELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNRFFGELP 75 (477)
Q Consensus 5 ~l~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 75 (477)
++.++++|+.|.+.+.... +.+...+..+|+|+.|+|++|.-. .++. +. +++|++|++..+.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHH
Confidence 4556789999999765331 124455678899999999988322 2232 43 7899999999988764433
Q ss_pred cccC--CCCCCCEEeCcCC--CCCCcccccccCCCCccEEEccCCcCcCCCCccccCCCCCCEEEccCCCCcccCCccc-
Q 038739 76 ISMG--NLGSLKVLDLSQN--GYFGELPTSIRNLFSLEKLDLSFNNFSGEFPWSTGNFSSLKLLDLRSCGFWGKVPHSI- 150 (477)
Q Consensus 76 ~~~~--~l~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l- 150 (477)
..+. .+++|++|+|+.+ ...+.. .+..+ . ..+. ...+++|++|++.+|.+....+..+
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~~l---~----------~~l~--~~~~p~Lr~L~L~~~~i~~~~~~~la 273 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDG--DMNVF---R----------PLFS--KDRFPNLKWLGIVDAEEQNVVVEMFL 273 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCS--CGGGT---G----------GGSC--TTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred HHHHHccCCCCcEEEEeccccccccch--hHHHH---H----------HHHh--cCCCCCcCEEeCCCCCCchHHHHHHH
Confidence 3343 7899999998642 211110 01000 0 0000 0134566666666665543222222
Q ss_pred --cCCCCCcEEECCCCcCCCc----CCcCCCCCCCCCEEEccCCccccccchhhhc-CCCCCEEeCcCCc
Q 038739 151 --GNFTQLQYLHLGSNNFSGD----LLGPIGNLRSLEAINVAKCNFSGQITSSLRN-LSQLTALDLAQNS 213 (477)
Q Consensus 151 --~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~~n~ 213 (477)
..+++|++|+|+.|.+++. ++..+..+++|+.|+++.|.++......+.. + ...++++.++
T Consensus 274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2456777777777777653 2233345678888888888777554444543 2 4567887776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=1.6e-09 Score=94.23 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=76.4
Q ss_pred ccccCCCCCCEEEcccc-cCCcc----ccccCCCCCCCCEEecccCcCccc----CCcccCCCCCCCEEeCcCCCCCCc-
Q 038739 28 VSVGNLHSLEELDLSAN-FLSSE----WPISIGNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGYFGE- 97 (477)
Q Consensus 28 ~~~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~- 97 (477)
..+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566777888888877 77642 234456667788888888877532 233444557788888888877543
Q ss_pred ---ccccccCCCCccEEEc--cCCcCcCC----CCccccCCCCCCEEEccCCCCc
Q 038739 98 ---LPTSIRNLFSLEKLDL--SFNNFSGE----FPWSTGNFSSLKLLDLRSCGFW 143 (477)
Q Consensus 98 ---~~~~l~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~ 143 (477)
+...+...++|++|++ ++|.+... +...+...+.|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666777888888 77777643 2334455677888888888763
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=7.2e-08 Score=83.76 Aligned_cols=19 Identities=11% Similarity=0.051 Sum_probs=9.5
Q ss_pred hhhcCCCcCEEeccCCccc
Q 038739 271 FLQNQHHLRFMDLSDNRIQ 289 (477)
Q Consensus 271 ~l~~~~~L~~L~Ls~n~i~ 289 (477)
.+...++|++|+|++|.+.
T Consensus 146 ~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEeccCCCCC
Confidence 3444455555555555443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=1e-08 Score=93.73 Aligned_cols=82 Identities=32% Similarity=0.380 Sum_probs=52.6
Q ss_pred CCCCCCCEEecccCcCcc--cCCcccCCCCCCCEEeCcCCCCCCc-ccccccCCCCccEEEccCCcCcCCCCc-------
Q 038739 55 GNLSSLKELDLSQNRFFG--ELPISMGNLGSLKVLDLSQNGYFGE-LPTSIRNLFSLEKLDLSFNNFSGEFPW------- 124 (477)
Q Consensus 55 ~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~------- 124 (477)
.++++|++|+|++|++++ .++..+..+++|++|+|++|++.+. ..+.+..+ +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 456777777777777765 3345556677777777777777654 11223333 778888888877765552
Q ss_pred cccCCCCCCEEEc
Q 038739 125 STGNFSSLKLLDL 137 (477)
Q Consensus 125 ~~~~l~~L~~L~L 137 (477)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3556777777763
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=1.6e-07 Score=85.93 Aligned_cols=103 Identities=25% Similarity=0.248 Sum_probs=70.5
Q ss_pred CCCCCE--EEccCCCCC---CCccccccCCCCCCEEEcccccCCcc--ccccCCCCCCCCEEecccCcCcccCCcccCCC
Q 038739 9 LSKLLH--LDLSLNELQ---GELPVSVGNLHSLEELDLSANFLSSE--WPISIGNLSSLKELDLSQNRFFGELPISMGNL 81 (477)
Q Consensus 9 l~~L~~--L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 81 (477)
.+.|+. ++++.|... ..++....++++|++|+|++|++++. ++..+..+++|+.|+|++|++.+. ..+..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence 334444 566666432 11222225688999999999999873 345667889999999999998754 233333
Q ss_pred C--CCCEEeCcCCCCCCccc-------ccccCCCCccEEEc
Q 038739 82 G--SLKVLDLSQNGYFGELP-------TSIRNLFSLEKLDL 113 (477)
Q Consensus 82 ~--~L~~L~Ls~n~l~~~~~-------~~l~~l~~L~~L~L 113 (477)
. +|++|+|++|.+.+.+| ..+..+++|+.||=
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 3 89999999999876554 24677888988864
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=1.4e-07 Score=80.12 Aligned_cols=84 Identities=13% Similarity=0.081 Sum_probs=50.1
Q ss_pred CCCCEEEcccccCCccccccCCCCCCCCEEecccCc-CcccCCcccCCC----CCCCEEeCcCCC-CCCcccccccCCCC
Q 038739 34 HSLEELDLSANFLSSEWPISIGNLSSLKELDLSQNR-FFGELPISMGNL----GSLKVLDLSQNG-YFGELPTSIRNLFS 107 (477)
Q Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~ 107 (477)
.+|++||+++|.++...-..+..+++|++|+|++|. +++.--..++.+ ++|++|++++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456777777776665544556667777777777764 443322334433 357777777764 54433344566677
Q ss_pred ccEEEccCCc
Q 038739 108 LEKLDLSFNN 117 (477)
Q Consensus 108 L~~L~Ls~n~ 117 (477)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=3.2e-07 Score=77.83 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=55.4
Q ss_pred CCCCEEecccCcCcccCCcccCCCCCCCEEeCcCCC-CCCcccccccCC----CCccEEEccCCc-CcCCCCccccCCCC
Q 038739 58 SSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQNG-YFGELPTSIRNL----FSLEKLDLSFNN-FSGEFPWSTGNFSS 131 (477)
Q Consensus 58 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 131 (477)
.+|++||+++|.++..--..+..+++|++|+|++|. +++.--..++.+ ++|++|++++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467888888877765555566777888888888774 543333344443 367888887764 65443345666778
Q ss_pred CCEEEccCCC
Q 038739 132 LKLLDLRSCG 141 (477)
Q Consensus 132 L~~L~L~~n~ 141 (477)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887775
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=0.00012 Score=63.18 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=9.4
Q ss_pred hhhhcCCCcCEEeccCCc
Q 038739 270 NFLQNQHHLRFMDLSDNR 287 (477)
Q Consensus 270 ~~l~~~~~L~~L~Ls~n~ 287 (477)
..+..-++|+.|+++.|.
T Consensus 151 ~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 151 MAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHCSSCCEEECCCCC
T ss_pred HHHHhCCCcCeEeccCCC
Confidence 344445556666655543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.43 E-value=4.2e-05 Score=66.09 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=69.3
Q ss_pred ccCCCCCCEEEcccc-cCCcc----ccccCCCCCCCCEEecccCcCccc----CCcccCCCCCCCEEeCcCCCCCCc---
Q 038739 30 VGNLHSLEELDLSAN-FLSSE----WPISIGNLSSLKELDLSQNRFFGE----LPISMGNLGSLKVLDLSQNGYFGE--- 97 (477)
Q Consensus 30 ~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~--- 97 (477)
+.+-+.|++|+|++| +|... +..++..-+.|+.|+|++|.+... +.+.+..-+.|++|+|+.|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567788888775 66532 334456667788888888877633 223334556788888888877543
Q ss_pred -ccccccCCCCccEEEccCCc---CcC----CCCccccCCCCCCEEEccCCCC
Q 038739 98 -LPTSIRNLFSLEKLDLSFNN---FSG----EFPWSTGNFSSLKLLDLRSCGF 142 (477)
Q Consensus 98 -~~~~l~~l~~L~~L~Ls~n~---l~~----~~~~~~~~l~~L~~L~L~~n~~ 142 (477)
+.+++..-+.|++|+|++|. +.. .+...+..-+.|+.|+++.+..
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33445556678888887543 221 1223444557788888876654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.02 E-value=0.00087 Score=53.90 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=16.8
Q ss_pred ccceeecCCCcCccCCChhhhccCCCCeEeCCCCcC
Q 038739 337 GTITYLASNNSLTGEIPSWICNLNILESLVLSHNNL 372 (477)
Q Consensus 337 ~l~~L~ls~n~l~~~~p~~~~~l~~L~~LdLs~N~l 372 (477)
+++.|++++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344444444444433333444444444444444444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.58 E-value=0.0034 Score=50.39 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=39.9
Q ss_pred cEEEccCCCCC--CcchhhhcCCCcCEEeccCCcccccCCccCCcccCCCCCeEEecCCccc
Q 038739 256 KYIGLRSCNLT--KFPNFLQNQHHLRFMDLSDNRIQGKVPKWLLDPNMQNLNGFNFSHNLLT 315 (477)
Q Consensus 256 ~~L~L~~n~l~--~~p~~l~~~~~L~~L~Ls~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 315 (477)
..++.+++.++ .+|..+ .++|++|+|++|+|+...+..|. .+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCee
Confidence 36777777777 777532 34688888888888855555554 6788888888888765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.57 E-value=4.3 Score=30.23 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=25.7
Q ss_pred CCCCccccccCCCCCCEEEcccccCCccccccCCCCCCCCEEeccc
Q 038739 22 LQGELPVSVGNLHSLEELDLSANFLSSEWPISIGNLSSLKELDLSQ 67 (477)
Q Consensus 22 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 67 (477)
++..-..+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44444455666666666666554 3434445666666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.56 E-value=17 Score=26.92 Aligned_cols=45 Identities=11% Similarity=-0.016 Sum_probs=23.4
Q ss_pred CCccccccCCCCCCCCEEecccCcCcccCCcccCCCCCCCEEeCcC
Q 038739 46 LSSEWPISIGNLSSLKELDLSQNRFFGELPISMGNLGSLKVLDLSQ 91 (477)
Q Consensus 46 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 91 (477)
++.+...+|.+|.+|+.+.+-.+ ++.+-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455666666666665443 2323444555555555555544
No 167
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=32.58 E-value=12 Score=25.02 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=7.5
Q ss_pred hhhhhhhhhhhcCc
Q 038739 441 VAGLVLGFNFSTGI 454 (477)
Q Consensus 441 ~~~~~~~~~~~~~~ 454 (477)
|+|-++|++.+.+.
T Consensus 13 vlGg~~~lll~~gl 26 (70)
T 2klu_A 13 VLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 44555555555554
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.42 E-value=14 Score=21.86 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=6.4
Q ss_pred echhhhhhhhhhh
Q 038739 437 VGGLVAGLVLGFN 449 (477)
Q Consensus 437 ~~~~~~~~~~~~~ 449 (477)
+.|+|+|.++|..
T Consensus 13 IAGiVvG~v~gv~ 25 (38)
T 2k1k_A 13 IVAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHH
Confidence 3455555554443
No 169
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.16 E-value=17 Score=25.62 Aligned_cols=8 Identities=0% Similarity=0.210 Sum_probs=3.4
Q ss_pred chhhhhhh
Q 038739 438 GGLVAGLV 445 (477)
Q Consensus 438 ~~~~~~~~ 445 (477)
+|+++|++
T Consensus 15 ~gvi~gil 22 (79)
T 2knc_B 15 LSVMGAIL 22 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
Done!