Query 038741
Match_columns 465
No_of_seqs 121 out of 1311
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 02:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 2.2E-58 4.8E-63 455.6 34.8 402 18-454 33-437 (437)
2 KOG1304 Amino acid transporter 100.0 2.3E-56 4.9E-61 433.2 29.4 387 21-451 45-449 (449)
3 PTZ00206 amino acid transporte 100.0 4.7E-55 1E-59 444.5 33.7 398 22-452 59-465 (467)
4 PLN03074 auxin influx permease 100.0 5.8E-50 1.3E-54 405.2 34.3 393 21-463 44-463 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1.3E-53 2.7E-58 431.7 -1.1 402 21-448 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 7.9E-43 1.7E-47 343.5 27.2 398 20-454 3-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 5.6E-45 1.2E-49 333.0 6.2 406 17-460 111-523 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.5E-31 3.3E-36 267.2 30.1 396 19-442 5-406 (415)
9 PRK10483 tryptophan permease; 99.9 3.9E-23 8.4E-28 203.4 32.3 351 19-419 7-373 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 1.2E-22 2.5E-27 202.0 35.2 350 22-421 2-367 (394)
11 PRK09664 tryptophan permease T 99.9 1.8E-22 4E-27 198.4 32.1 351 21-419 7-374 (415)
12 PRK15132 tyrosine transporter 99.9 3E-22 6.6E-27 198.0 33.1 344 24-420 4-363 (403)
13 TIGR00837 araaP aromatic amino 99.9 3.1E-22 6.7E-27 200.3 27.5 343 29-419 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 2E-19 4.3E-24 177.1 35.1 391 24-450 20-441 (443)
15 TIGR00814 stp serine transport 99.8 6.3E-18 1.4E-22 167.8 28.1 365 24-422 4-382 (397)
16 PRK10249 phenylalanine transpo 99.6 2.3E-12 5.1E-17 131.9 35.9 381 1-418 1-394 (458)
17 PRK10655 potE putrescine trans 99.6 5E-12 1.1E-16 129.1 34.7 242 19-286 4-246 (438)
18 PRK10644 arginine:agmatin anti 99.6 2.3E-11 5.1E-16 124.3 35.0 243 17-287 4-249 (445)
19 PRK10435 cadB lysine/cadaverin 99.6 1.8E-11 3.8E-16 124.8 33.7 244 18-288 2-246 (435)
20 PRK15049 L-asparagine permease 99.5 4.3E-11 9.3E-16 123.7 35.5 366 19-418 26-405 (499)
21 PRK10238 aromatic amino acid t 99.5 4.1E-11 9E-16 122.7 34.3 365 18-418 9-385 (456)
22 PRK11049 D-alanine/D-serine/gl 99.5 1.4E-10 3.1E-15 119.2 36.7 247 18-286 17-268 (469)
23 TIGR01773 GABAperm gamma-amino 99.5 1.3E-10 2.8E-15 119.2 36.0 248 18-287 9-259 (452)
24 TIGR03810 arg_ornith_anti argi 99.5 7.3E-11 1.6E-15 121.4 33.5 365 21-419 1-380 (468)
25 TIGR00905 2A0302 transporter, 99.5 1.4E-10 3.1E-15 119.4 34.4 248 20-287 6-256 (473)
26 PRK10580 proY putative proline 99.5 4.1E-10 8.8E-15 115.6 37.1 246 17-284 5-254 (457)
27 PRK10746 putative transport pr 99.5 3.5E-10 7.6E-15 115.9 36.1 367 18-419 7-388 (461)
28 PRK11387 S-methylmethionine tr 99.5 3.2E-10 7E-15 116.7 35.7 251 19-289 12-266 (471)
29 PRK11021 putative transporter; 99.5 2.9E-10 6.2E-15 115.1 34.6 230 24-283 2-231 (410)
30 PRK10836 lysine transporter; P 99.5 6.8E-10 1.5E-14 114.8 37.3 250 16-288 10-264 (489)
31 TIGR00906 2A0303 cationic amin 99.4 4.6E-10 1E-14 117.3 34.5 373 16-418 23-410 (557)
32 TIGR00930 2a30 K-Cl cotranspor 99.4 6.3E-10 1.4E-14 121.8 36.0 254 19-283 74-334 (953)
33 TIGR00909 2A0306 amino acid tr 99.4 4.1E-10 9E-15 114.7 32.2 294 20-335 2-307 (429)
34 TIGR00913 2A0310 amino acid pe 99.4 1.2E-09 2.5E-14 112.9 35.6 243 21-283 2-251 (478)
35 PRK10197 gamma-aminobutyrate t 99.4 2.8E-09 6E-14 108.9 33.8 349 33-418 4-367 (446)
36 PF13520 AA_permease_2: Amino 99.4 1.4E-09 3E-14 110.7 30.2 359 24-422 2-378 (426)
37 TIGR00908 2A0305 ethanolamine 99.4 3.6E-09 7.8E-14 108.2 33.3 240 18-283 4-245 (442)
38 TIGR00912 2A0309 spore germina 99.3 1E-09 2.2E-14 109.1 28.0 239 22-292 2-241 (359)
39 PRK11357 frlA putative fructos 99.3 1.4E-09 3E-14 111.3 29.5 244 17-285 4-251 (445)
40 TIGR00911 2A0308 L-type amino 99.3 4.7E-09 1E-13 109.0 31.7 249 18-287 39-293 (501)
41 KOG1287 Amino acid transporter 99.3 2.1E-09 4.6E-14 106.7 23.7 367 15-423 6-390 (479)
42 COG1113 AnsP Gamma-aminobutyra 99.2 1.1E-08 2.4E-13 100.1 27.7 361 19-418 11-388 (462)
43 TIGR00907 2A0304 amino acid pe 99.2 2.8E-07 6E-12 95.4 34.9 251 18-282 9-270 (482)
44 PRK15238 inner membrane transp 99.1 6E-07 1.3E-11 93.1 35.7 253 20-284 6-266 (496)
45 COG0531 PotE Amino acid transp 99.1 2.1E-07 4.5E-12 95.8 32.0 251 16-290 7-262 (466)
46 TIGR03428 ureacarb_perm permea 99.1 1.6E-06 3.5E-11 89.5 36.9 259 17-289 9-273 (475)
47 TIGR03813 put_Glu_GABA_T putat 99.1 8.4E-07 1.8E-11 91.6 33.2 53 234-289 202-254 (474)
48 TIGR00910 2A0307_GadC glutamat 99.0 2E-06 4.3E-11 89.3 33.7 238 21-282 4-247 (507)
49 COG0833 LysP Amino acid transp 99.0 9.2E-07 2E-11 88.7 27.8 364 19-417 42-426 (541)
50 PF03845 Spore_permease: Spore 98.9 5.3E-07 1.1E-11 88.1 25.0 234 22-292 1-237 (320)
51 KOG1286 Amino acid transporter 98.8 9.1E-07 2E-11 91.3 21.3 372 18-418 27-422 (554)
52 PF00324 AA_permease: Amino ac 98.8 9E-08 1.9E-12 98.9 14.1 247 33-292 7-263 (478)
53 KOG3832 Predicted amino acid t 98.7 1.2E-07 2.6E-12 82.2 9.4 217 24-255 13-302 (319)
54 COG3949 Uncharacterized membra 98.6 7.2E-05 1.6E-09 70.5 25.4 134 26-178 6-142 (349)
55 PRK11375 allantoin permease; P 98.5 0.00093 2E-08 68.8 32.8 270 1-291 1-293 (484)
56 TIGR00800 ncs1 NCS1 nucleoside 98.3 0.00069 1.5E-08 69.3 28.4 190 88-291 76-273 (442)
57 TIGR02358 thia_cytX probable h 98.0 0.012 2.6E-07 59.0 28.3 177 87-291 57-234 (386)
58 COG1457 CodB Purine-cytosine p 97.9 0.015 3.2E-07 58.3 27.0 206 91-329 84-293 (442)
59 KOG1289 Amino acid transporter 97.9 0.012 2.6E-07 59.7 26.2 64 224-290 250-313 (550)
60 PF00474 SSF: Sodium:solute sy 97.9 0.0038 8.3E-08 63.1 23.4 148 20-186 5-155 (406)
61 PRK09442 panF sodium/panthothe 97.8 0.063 1.4E-06 55.6 34.6 149 20-186 40-193 (483)
62 PRK11017 codB cytosine permeas 97.7 0.024 5.1E-07 57.2 25.2 174 87-290 70-244 (404)
63 TIGR02119 panF sodium/pantothe 97.7 0.098 2.1E-06 54.0 33.8 149 20-186 39-192 (471)
64 TIGR00813 sss transporter, SSS 97.6 0.09 1.9E-06 53.2 27.3 147 21-186 3-151 (407)
65 COG0591 PutP Na+/proline sympo 97.4 0.2 4.4E-06 51.9 28.9 148 20-185 37-189 (493)
66 PRK12488 acetate permease; Pro 97.4 0.26 5.5E-06 51.9 35.4 147 20-186 66-215 (549)
67 PF02133 Transp_cyt_pur: Perme 96.9 0.028 6.1E-07 57.4 15.6 250 18-287 4-259 (440)
68 TIGR00796 livcs branched-chain 96.6 0.83 1.8E-05 45.4 28.2 75 30-113 2-79 (378)
69 PF02554 CstA: Carbon starvati 96.6 0.22 4.7E-06 48.5 17.4 113 15-130 44-156 (376)
70 TIGR02711 symport_actP cation/ 96.6 1.3 2.8E-05 46.7 34.7 146 20-185 66-214 (549)
71 PRK09395 actP acetate permease 96.5 1.3 2.9E-05 46.6 35.3 146 20-185 68-216 (551)
72 PRK00701 manganese transport p 96.1 2 4.3E-05 43.8 33.5 45 88-132 94-138 (439)
73 TIGR02121 Na_Pro_sym sodium/pr 96.0 2.3 5E-05 44.1 32.7 152 20-186 35-191 (487)
74 TIGR00835 agcS amino acid carr 96.0 0.19 4.1E-06 50.5 14.3 86 20-109 44-138 (425)
75 TIGR03648 Na_symport_lg probab 95.9 3 6.4E-05 44.0 35.9 146 20-184 31-178 (552)
76 PRK15419 proline:sodium sympor 95.7 3.2 7E-05 43.2 31.5 151 20-186 39-195 (502)
77 PF01566 Nramp: Natural resist 95.3 3.5 7.5E-05 40.9 24.5 78 88-179 42-121 (358)
78 COG1914 MntH Mn2+ and Fe2+ tra 95.1 4.2 9.2E-05 40.9 30.5 46 88-133 77-122 (416)
79 COG1966 CstA Carbon starvation 95.1 1.1 2.4E-05 45.8 15.8 115 13-130 42-156 (575)
80 COG1953 FUI1 Cytosine/uracil/t 94.8 5.5 0.00012 40.6 30.5 206 86-305 101-322 (497)
81 PRK15015 carbon starvation pro 94.6 0.62 1.3E-05 48.7 13.0 113 15-130 75-187 (701)
82 PF05525 Branch_AA_trans: Bran 94.3 0.38 8.2E-06 48.4 10.6 133 44-195 220-352 (427)
83 PRK10484 putative transporter; 93.1 13 0.00028 38.9 33.2 89 20-113 37-126 (523)
84 TIGR00796 livcs branched-chain 92.8 1 2.3E-05 44.8 10.7 93 86-194 253-345 (378)
85 COG0733 Na+-dependent transpor 92.7 12 0.00027 37.6 25.8 224 22-266 8-251 (439)
86 KOG1288 Amino acid transporter 92.0 19 0.00041 38.2 19.2 57 227-286 295-351 (945)
87 COG1114 BrnQ Branched-chain am 89.3 6 0.00013 39.3 11.8 130 33-179 208-340 (431)
88 COG4147 DhlC Predicted symport 88.9 29 0.00063 35.3 28.4 186 86-286 102-293 (529)
89 KOG2083 Na+/K+ symporter [Inor 88.5 4 8.6E-05 42.3 10.2 232 24-281 31-275 (643)
90 PRK15433 branched-chain amino 86.8 4 8.7E-05 41.3 9.2 129 46-194 226-354 (439)
91 KOG2349 Na+:iodide/myo-inosito 81.5 56 0.0012 34.4 14.9 245 20-288 44-298 (585)
92 PF00209 SNF: Sodium:neurotran 81.1 76 0.0016 33.2 28.8 102 24-135 6-112 (523)
93 KOG2082 K+/Cl- cotransporter K 79.2 1E+02 0.0022 33.5 25.0 106 21-129 113-220 (1075)
94 TIGR01197 nramp NRAMP (natural 71.7 1.2E+02 0.0025 30.6 29.1 96 30-132 11-108 (390)
95 PF05525 Branch_AA_trans: Bran 67.5 1.5E+02 0.0032 30.2 30.9 66 24-97 4-72 (427)
96 PLN00151 potassium transporter 65.5 1.8E+02 0.004 32.0 14.3 89 162-255 282-370 (852)
97 PF01235 Na_Ala_symp: Sodium:a 61.2 1.9E+02 0.0041 29.3 22.0 88 14-102 10-102 (416)
98 PHA02764 hypothetical protein; 57.9 50 0.0011 31.9 7.6 95 16-116 7-105 (399)
99 PF12794 MscS_TM: Mechanosensi 56.3 2.1E+02 0.0045 28.1 14.5 52 249-300 32-84 (340)
100 COG3763 Uncharacterized protei 53.2 24 0.00053 25.5 3.6 34 431-464 8-42 (71)
101 cd08765 Cyt_b561_CYBRD1 Verteb 51.2 75 0.0016 27.2 7.1 68 260-329 44-111 (153)
102 COG5052 YOP1 Protein involved 49.7 1.5E+02 0.0031 26.0 8.5 54 399-452 61-114 (186)
103 PRK15433 branched-chain amino 48.5 3.1E+02 0.0068 28.0 25.9 42 24-65 9-53 (439)
104 PLN02351 cytochromes b561 fami 47.7 2.3E+02 0.0051 26.2 12.3 89 231-328 56-145 (242)
105 PLN02680 carbon-monoxide oxyge 47.6 90 0.002 28.7 7.4 67 260-328 76-142 (232)
106 cd08762 Cyt_b561_CYBASC3 Verte 44.9 1E+02 0.0022 27.1 7.1 67 260-328 67-133 (179)
107 KOG1289 Amino acid transporter 44.2 4E+02 0.0087 27.9 14.5 48 88-135 325-372 (550)
108 cd08766 Cyt_b561_ACYB-1_like P 44.2 99 0.0022 26.1 6.8 68 260-329 37-104 (144)
109 PRK13183 psbN photosystem II r 43.9 24 0.00053 23.1 2.3 31 262-292 4-34 (46)
110 PLN02810 carbon-monoxide oxyge 40.9 1.5E+02 0.0032 27.2 7.7 94 228-328 49-142 (231)
111 CHL00020 psbN photosystem II p 39.6 24 0.00051 22.9 1.7 28 265-292 4-31 (43)
112 PF05805 L6_membrane: L6 membr 39.0 70 0.0015 28.5 5.2 66 389-454 43-118 (195)
113 PF03672 UPF0154: Uncharacteri 37.8 32 0.0007 24.5 2.4 32 433-464 3-35 (64)
114 TIGR00909 2A0306 amino acid tr 37.0 2.8E+02 0.0061 27.9 10.2 47 89-135 265-311 (429)
115 PF02468 PsbN: Photosystem II 36.1 37 0.0008 22.1 2.2 28 265-292 4-31 (43)
116 PLN00150 potassium ion transpo 35.7 6.4E+02 0.014 27.8 14.3 90 161-255 221-310 (779)
117 PF08019 DUF1705: Domain of un 34.6 2.9E+02 0.0063 23.5 8.6 38 380-417 48-87 (156)
118 PRK04949 putative sulfate tran 31.7 4.3E+02 0.0094 24.6 9.7 40 246-290 15-54 (251)
119 cd08764 Cyt_b561_CG1275_like N 30.6 2.1E+02 0.0046 26.0 7.1 69 260-328 54-122 (214)
120 cd08763 Cyt_b561_CYB561 Verteb 29.6 3.3E+02 0.0072 23.0 7.6 68 260-329 37-104 (143)
121 PRK12768 CysZ-like protein; Re 28.7 4.8E+02 0.01 24.2 11.5 28 249-281 9-36 (240)
122 PRK09950 putative transporter; 28.6 7E+02 0.015 26.1 21.0 111 24-134 85-217 (506)
123 PRK01844 hypothetical protein; 27.3 1.1E+02 0.0023 22.4 3.6 34 431-464 8-42 (72)
124 PF11085 YqhR: Conserved membr 26.8 1.3E+02 0.0028 26.1 4.7 39 35-73 47-87 (173)
125 PF02028 BCCT: BCCT family tra 26.4 7.4E+02 0.016 25.7 25.4 22 24-45 76-97 (485)
126 COG1114 BrnQ Branched-chain am 26.0 7E+02 0.015 25.2 21.2 66 24-97 6-74 (431)
127 KOG1619 Cytochrome b [Energy p 24.7 5.6E+02 0.012 23.7 10.5 95 227-327 56-150 (245)
128 cd08763 Cyt_b561_CYB561 Verteb 24.1 1.6E+02 0.0034 24.9 4.7 24 426-449 41-64 (143)
129 PRK00523 hypothetical protein; 23.5 1.4E+02 0.003 21.8 3.6 33 432-464 10-43 (72)
130 PF00324 AA_permease: Amino ac 21.6 3.1E+02 0.0067 28.1 7.4 47 89-135 275-321 (478)
131 PF03134 TB2_DP1_HVA22: TB2/DP 21.0 3E+02 0.0065 21.0 5.5 28 394-421 2-29 (94)
132 COG5264 VTC1 Vacuolar transpor 20.6 4.5E+02 0.0098 21.5 6.3 55 18-76 30-84 (126)
133 PF01235 Na_Ala_symp: Sodium:a 20.1 5.1E+02 0.011 26.2 8.2 87 95-194 300-386 (416)
134 COG0814 SdaC Amino acid permea 20.0 3.9E+02 0.0084 27.0 7.5 82 368-449 324-409 (415)
135 PRK11281 hypothetical protein; 20.0 1.4E+03 0.029 26.7 12.3 31 260-290 540-570 (1113)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-58 Score=455.61 Aligned_cols=402 Identities=35% Similarity=0.609 Sum_probs=355.5
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCccccHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAP--LSGNRNHTYRAAVK 95 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~--~~~~~~~sy~~l~~ 95 (465)
.++|.+|++++.+|.++.++|.|+|+||||++++||..|++++++.++++.||+.+|.+|++.. ..++|.++|+|+++
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~ 112 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ 112 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999998776 44567789999999
Q ss_pred HHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchh
Q 038741 96 TYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLS 175 (465)
Q Consensus 96 ~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 175 (465)
++||+++++++.+++.+.++|+|+.|++..+|++..+.+..|.+.. ..+.+.|+++++++.+|++++|+++.++
T Consensus 113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l~ 186 (437)
T KOG1303|consen 113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSLS 186 (437)
T ss_pred HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchhH
Confidence 9999999999999999999999999999999999999988765431 2335789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCC
Q 038741 176 WLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSS 255 (465)
Q Consensus 176 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~ 255 (465)
+.|..+.++++.|..+.+...+.........+...+. ....+. .++++|+++|+|.+|.++|||+++||+|
T Consensus 187 ~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~-------~~~~~~--~f~a~g~iaFaf~gH~v~peIq~tMk~p 257 (437)
T KOG1303|consen 187 YLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD-------LGTIPT--VFTALGIIAFAYGGHAVLPEIQHTMKSP 257 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc-------CCCCcc--hhhhhhheeeeecCCeeeeehHhhcCCc
Confidence 9999999999998888887777665544222111110 001111 1899999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Q 038741 256 PPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIES 335 (465)
Q Consensus 256 ~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~ 335 (465)
++|+|++..+..+++++|+..++.||++||++++||++.|+.+|.|+...+++++.+|++.++.+...|+.+.+|+
T Consensus 258 ----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~ 333 (437)
T KOG1303|consen 258 ----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEK 333 (437)
T ss_pred ----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHH
Confidence 8899999999999999999999999999999999999999977899999999999999999999999999999999
Q ss_pred HhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHHhhhHHHHHH
Q 038741 336 WTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIA 415 (465)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~filP~l~~l~ 415 (465)
+...++++ + + .+....|...|+.+++.+.++|+.+|+|+++++++||+...++++++|+++|++
T Consensus 334 ~~~~~~~~--~---------~-----~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~ 397 (437)
T KOG1303|consen 334 LIGVKHPD--F---------K-----KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLL 397 (437)
T ss_pred HhccCCcc--c---------c-----ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98755332 1 0 023478999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 038741 416 QKNIKRGTSWWFGLQLL-NLVCFLAALGAACSSIHGLYKA 454 (465)
Q Consensus 416 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~si~~ii~~ 454 (465)
.+|+++...+|+++|.. .++++++++...++++++++.+
T Consensus 398 ~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 398 IKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 99999999999999988 6999999999999999988753
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-56 Score=433.22 Aligned_cols=387 Identities=17% Similarity=0.255 Sum_probs=333.9
Q ss_pred ccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCccccHHHHHHHH-
Q 038741 21 RTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAP--LSGNRNHTYRAAVKTY- 97 (465)
Q Consensus 21 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~--~~~~~~~sy~~l~~~~- 97 (465)
+..|..++..|++|.++|+|+|++|+||+++||+.|.+..++++.++.|++++|++|..+. +.+....+|++.++.+
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~ 124 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAM 124 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHH
Confidence 4468999999999999999999999999999999999999999999999999999995433 2223456888877655
Q ss_pred ---------cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcC
Q 038741 98 ---------LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQI 168 (465)
Q Consensus 98 ---------~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 168 (465)
+|+++|.+++.++.++++|.|++|+++.+++++++.+. +.. -.++.+.++.+.....+|++++
T Consensus 125 ~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---~~~-----~~~s~~~~i~~~~~~~lll~~I 196 (449)
T KOG1304|consen 125 EGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---HSP-----GVLSVRLYILIQLPPLLLLNLI 196 (449)
T ss_pred cCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---cCC-----CCccHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999862 111 1566678888888889999999
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHH
Q 038741 169 PNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEI 248 (465)
Q Consensus 169 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 248 (465)
|++|.|+++|.+++++.+. .+++.+++.+++.+. .+ +.+...++.+++.++|+.+|||+++.++.|+
T Consensus 197 r~Lk~Lsp~Sl~Anv~~~~----g~~ii~~y~~~~~~~---~~------~~~~~~~~~~~~lf~GtaifafEGig~VLPl 263 (449)
T KOG1304|consen 197 RNLKILSPFSLFANVFILV----GLAIIMYYLVQDLPP---TS------DLPAVTGWSGLPLFFGTAIFAFEGIGMVLPL 263 (449)
T ss_pred HhhHHhhHHHHHHHHHHHH----HHHHHHHHHHhccCC---cc------ccccccchhhhHHHHHHHHHHhccceEEEeh
Confidence 9999999999999997763 555556666665541 11 2355556678999999999999999999999
Q ss_pred HHhhcCCCchhhHHH---HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhc
Q 038741 249 QDTLKSSPPENKVMK---KANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVM 325 (465)
Q Consensus 249 ~~~m~~~~~~~~~~~---~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~ 325 (465)
+++||+| ++|. +++..+|.+++++|+.+|++||++||+++++.|+.|+|+ +++.+.+++++++.++++||+|
T Consensus 264 En~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ 338 (449)
T KOG1304|consen 264 ENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQ 338 (449)
T ss_pred hhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchh
Confidence 9999999 9999 999999999999999999999999999999999999977 8999999999999999999999
Q ss_pred cccHHHHHHHHhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHH
Q 038741 326 AQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLT 405 (465)
Q Consensus 326 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~ 405 (465)
++|..+++|+.+.++...+ ++++..+.+|..++++++.+|.++|+++.+++++||++++.+.
T Consensus 339 ~yv~~eIi~~~i~~k~~~~------------------~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~ 400 (449)
T KOG1304|consen 339 FYVPIEIIEPGIRKKFSEN------------------RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLA 400 (449)
T ss_pred hhhhHHHHHHhHHHhcCcc------------------hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHH
Confidence 9999999999876653211 2348889999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHhccC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038741 406 VYFPLEMYIAQKNIK---RGTSWWFGLQLLNLVCFLAALGAACSSIHGL 451 (465)
Q Consensus 406 filP~l~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~si~~i 451 (465)
+++|+++++..+.++ +..++++.+..+.++|++..++|+|.|+.++
T Consensus 401 li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 401 LIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999997443 3345566678888888999899999998763
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=4.7e-55 Score=444.50 Aligned_cols=398 Identities=17% Similarity=0.189 Sum_probs=312.7
Q ss_pred cccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCC
Q 038741 22 TGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGR 101 (465)
Q Consensus 22 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~ 101 (465)
+++..++.+|++|+++|+|+|++|++|+++||++|++.+++++.++.|+.++|.++.+.. +..+|+|++++++|++
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~----~~~sY~~la~~~~G~~ 134 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT----NIRTYEGVARVLLGPW 134 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCCCHHHHHHHHhCHH
Confidence 457799999999999999999999999999999999999999999999999999987653 5679999999999999
Q ss_pred ceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCC-chhHHHHHHHHHHhcCCCcCchhHHHHH
Q 038741 102 KHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNN-PFMIGIGIVEMFLSQIPNIHKLSWLSII 180 (465)
Q Consensus 102 ~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 180 (465)
+++++++++.+.++|.|++|+++.+|.++.+++.... . +...-...++ .+.++..++++|++++|++++++++|.+
T Consensus 135 g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-~--~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i 211 (467)
T PTZ00206 135 GSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNA-P--DFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTI 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-c--chhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHH
Confidence 9999999999999999999999999999988753100 0 0000011122 3345566778999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCC----CcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCC
Q 038741 181 AAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGP----NLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSP 256 (465)
Q Consensus 181 ~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~ 256 (465)
++.+++...+. ..++...++.+.+ .+..+.+. +........+.+.++|+++|||.||.+.|++++|||+|
T Consensus 212 ~~~~i~~~vi~---ivi~~~~~~~~~~--~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~- 285 (467)
T PTZ00206 212 AVSFMVYLVIV---IVVHSCMNGLPEN--IKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR- 285 (467)
T ss_pred HHHHHHHHHhh---hhhhhhcccCccc--ccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhccc-
Confidence 98766532222 1122222211111 11111111 00111122357899999999999999999999999987
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCcc-CchHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Q 038741 257 PENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFY-KPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIES 335 (465)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~-~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~ 335 (465)
+.+|+.+++..++.+++++|..+|++||+.||+++++||+.|++ .++....+++++..++++.+||++++|+|+.+++
T Consensus 286 -t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~ 364 (467)
T PTZ00206 286 -SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYD 364 (467)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 55899999999999999999999999999999999999999994 3456778889999999999999999999999988
Q ss_pred HhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHHhhhHHHHHH
Q 038741 336 WTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIA 415 (465)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~filP~l~~l~ 415 (465)
.+..+ ..+ + ..+++...+..+++.++++|+++|+++.+++++||++++.++|++|+++|++
T Consensus 365 ~~~~~--~~~----------~-------~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~ 425 (467)
T PTZ00206 365 VIGWD--ARK----------V-------AFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMY 425 (467)
T ss_pred HhCCC--ccc----------C-------chhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 76321 100 0 1145566677777788999999999999999999999999999999999998
Q ss_pred Hh---ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038741 416 QK---NIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLY 452 (465)
Q Consensus 416 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~si~~ii 452 (465)
.. .++..+.+|..++.+.++|++.+++||++++++.+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 426 SGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred cCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 52 11222334455788888999999999999998876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=5.8e-50 Score=405.16 Aligned_cols=393 Identities=17% Similarity=0.177 Sum_probs=314.8
Q ss_pred ccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCC---c-cccHH
Q 038741 21 RTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAP-----LSGN---R-NHTYR 91 (465)
Q Consensus 21 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~-----~~~~---~-~~sy~ 91 (465)
+++|..++.+++++..+|.|+|+||+||++.||++|++.++++++++.||.++|.+++.+. +++. + ..+|.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999874221 1111 1 13789
Q ss_pred HHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCc
Q 038741 92 AAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNI 171 (465)
Q Consensus 92 ~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l 171 (465)
|+++..+||+++.+..+...+.+++.|+.|++..++++..+.. .++.+.|+++++++.+|++++|++
T Consensus 124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~sl 190 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPSF 190 (473)
T ss_pred HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccCH
Confidence 9999999999999999999999999999999988877664411 355577888999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHh
Q 038741 172 HKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDT 251 (465)
Q Consensus 172 ~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 251 (465)
++++++|.+|..+++.+.+.++..++.. +.+ ++.+. ....+...++.++++++|+|++|.++|++++|
T Consensus 191 ~~l~~~S~ig~~~tl~~av~i~i~~i~~---~~~-----~~~~~----~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~ 258 (473)
T PLN03074 191 HNYRIWSFLGLLMTTYTAWYMTIAALSH---GQV-----EGVKH----SGPTKLVLYFTGATNILYTFGGHAVTVEIMHA 258 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCC-----CCCCC----CCchhHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence 9999999999887654333222222211 111 11110 11224446778888999999999999999999
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCC--CccccCccCchHHHHHHHHHHHHHHHHhhhhccccH
Q 038741 252 LKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAP--GNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPV 329 (465)
Q Consensus 252 m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~--~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 329 (465)
||+| +||+++...+...++.+|+.+|+.||+.||++++ ++.+.+++.+. ...++++++.++++.+||+++.|+
T Consensus 259 M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~ 333 (473)
T PLN03074 259 MWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPL 333 (473)
T ss_pred ccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999 9999999999999999999999999999999875 45677775443 467999999999999999999999
Q ss_pred HHHHHHHhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHHhhh
Q 038741 330 FYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFP 409 (465)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~filP 409 (465)
.+..|+....+ +. +....|+.+|+.+++.++++|+.+|+|+.+++++||++++.+++++|
T Consensus 334 ~~~~e~~~~~~--~~------------------k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P 393 (473)
T PLN03074 334 YFVWEKAIGVH--DT------------------KSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIP 393 (473)
T ss_pred HHHHHHHhccc--cc------------------ccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99988865321 00 23478899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC-------------CCchh--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccccc
Q 038741 410 LEMYIAQKNIK-------------RGTSW--WFGLQLLNLVCFLAA-LGAACSSIHGLYKALHTYKPLKV 463 (465)
Q Consensus 410 ~l~~l~~~~~~-------------~~~~~--~~~~~~~~~~~~~~~-~~g~~~si~~ii~~~~~~~~f~~ 463 (465)
+++|++.++++ .++++ .+.++.+.+++.++| ++|+|+|+++++++.++|+-|++
T Consensus 394 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~ 463 (473)
T PLN03074 394 SLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAK 463 (473)
T ss_pred HHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhh
Confidence 99999865332 11112 245666666555565 68999999999999999876654
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.3e-53 Score=431.70 Aligned_cols=402 Identities=24% Similarity=0.357 Sum_probs=324.4
Q ss_pred ccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCC
Q 038741 21 RTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGG 100 (465)
Q Consensus 21 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (465)
|++|++++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.++|.+++++.+++++..+|+|++++.+|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999876532345788999999999999
Q ss_pred CceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHHHH
Q 038741 101 RKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSII 180 (465)
Q Consensus 101 ~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 180 (465)
++++++++++.+.++|.|++|++..+|++.++.+..+.+ ...++..+.++.+++++|++++|+++++++.|.+
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~ 153 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSIL 153 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHHhhh
Confidence 999999999999999999999999999999887653221 2455577778888899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCCchh-
Q 038741 181 AAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPEN- 259 (465)
Q Consensus 181 ~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~- 259 (465)
|.++.+.+..+.+... ......++.+...+ +..+..+.++++.++|+++|||.+|.++|++++|||+| ++
T Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~--~~~ 224 (409)
T PF01490_consen 154 GLFSIFYFIVIVVIYI-ISYGPGEPSGVPSP------PVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP--SKF 224 (409)
T ss_pred hhhccceeeeeeccee-eeeecccccccccc------cccccchhhHHHHhhhhhhhhhhcccccceeeeeccCC--ccc
Confidence 9997764211111111 11111111111111 11234566789999999999999999999999999998 22
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHhhc
Q 038741 260 KVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESWTST 339 (465)
Q Consensus 260 ~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~ 339 (465)
+|+.++...++.+++++|+.+|+.||++||+++++|++.|++++++...++++++.++++.+||++.+|.++.+++.+.+
T Consensus 225 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~ 304 (409)
T PF01490_consen 225 KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFK 304 (409)
T ss_pred cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheec
Confidence 34559999999999999999999999999999999999999777778999999999999999999999999999998764
Q ss_pred cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHHhhhHHHHHHHhcc
Q 038741 340 RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEMYIAQKNI 419 (465)
Q Consensus 340 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~filP~l~~l~~~~~ 419 (465)
+.+. +++...+ +.+.+++|+.+|+.+++.++++|..+|+++++++++|++++..++|++|+++|++.+|+
T Consensus 305 ~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~ 374 (409)
T PF01490_consen 305 RAAS----SRDSPKN------TPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKR 374 (409)
T ss_pred cccc----ccccccc------ccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcc
Confidence 3000 0000000 01234789999999999999999999999999999999999999999999999999877
Q ss_pred CCCchhHHH-----HHHHHHHHHHHHHHHHHHHH
Q 038741 420 KRGTSWWFG-----LQLLNLVCFLAALGAACSSI 448 (465)
Q Consensus 420 ~~~~~~~~~-----~~~~~~~~~~~~~~g~~~si 448 (465)
++.+.+++. .+.+.+++++..+.|+++++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 375 KRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred cccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 664443332 34555666666666666554
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-43 Score=343.48 Aligned_cols=398 Identities=19% Similarity=0.276 Sum_probs=315.9
Q ss_pred cccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcC
Q 038741 20 KRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLG 99 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G 99 (465)
+++.|...+++|+.|+++|+|++++|++|++.|.+.|++.+.+++.++.++.+++.+|.+.. +..+|+++++..+|
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~----~~~ty~~l~~~~~g 78 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS----GERTYSSLGDLIFG 78 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc----CCCCHHHHHHHHcC
Confidence 34458899999999999999999999999999999999999999999999999999997653 22399999999999
Q ss_pred CCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCC-c-hhHHHHHHHHHHhcCCCcCchhHH
Q 038741 100 GRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNN-P-FMIGIGIVEMFLSQIPNIHKLSWL 177 (465)
Q Consensus 100 ~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~i~~pl~~~~~l~~l~~~ 177 (465)
+.++....+.......| |++|++..+|.+..+.......... .. ++.++ . +++....++.||++.|+++++++.
T Consensus 79 ~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~--~~-~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~t 154 (411)
T KOG1305|consen 79 KLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEG--GS-HYLDRNFLILLVLLFIILPLSLLKNLDSLKYT 154 (411)
T ss_pred CCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhccccccc--cc-ccccceeEeehHHHHHHHHHHHHHhhhhHHHH
Confidence 99977777777777777 7999999999998665542111110 00 02223 2 466677789999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCCc
Q 038741 178 SIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPP 257 (465)
Q Consensus 178 s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~ 257 (465)
|.++..++..+.++ ++++....+.. .++..+ +.+.....++.+.++++++|+|.||.++.++++|||||
T Consensus 155 S~~s~~~~~~fv~~----vv~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~-- 223 (411)
T KOG1305|consen 155 SALSLASVVYFVVL----VVYKYFQGPCA---LGRLSY--LVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR-- 223 (411)
T ss_pred HHHHHHHHHHHHHH----HHHHHHhcccc---cCCccc--ccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--
Confidence 99999988753333 33333332210 111111 12223333789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchH------HHHHHHHHHHHHHHHhhhhccccHHH
Q 038741 258 ENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFW------LVDMANSFIVVHLLGAYQVMAQPVFY 331 (465)
Q Consensus 258 ~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~------~~~~~~~~~~~~~~~s~pl~~~p~~~ 331 (465)
+++++.++...+...++.+|...|.+||+.||+++.+|++.++++... ....++..+.++.+.++|+..+|+|.
T Consensus 224 s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~ 303 (411)
T KOG1305|consen 224 SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRM 303 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 889999999999999999999999999999999999999999866443 24789999999999999999999999
Q ss_pred HHHHHhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHHhhhHH
Q 038741 332 VIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLE 411 (465)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~filP~l 411 (465)
.+++......++. + + .+..++..++..++...++.|+.+|+++++++++||++++.++|++|++
T Consensus 304 ~l~~~~~~~~~~~----~------~------~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~ 367 (411)
T KOG1305|consen 304 NLDELLFPYQPGL----T------S------FSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPAL 367 (411)
T ss_pred HHHHHhcccCCCC----C------C------ccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHH
Confidence 9888765432221 0 1 2236778899999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038741 412 MYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLYKA 454 (465)
Q Consensus 412 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~si~~ii~~ 454 (465)
+|++..|++.+ +....+...++++...++|++.-+.++..+
T Consensus 368 ~yl~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 368 YYLKASKKKSR--EPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred hhheeeccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999876222 233455666777777788887777776643
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-45 Score=333.00 Aligned_cols=406 Identities=16% Similarity=0.188 Sum_probs=336.9
Q ss_pred CCccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCC---CccccHHH
Q 038741 17 GRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAP-LSG---NRNHTYRA 92 (465)
Q Consensus 17 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~-~~~---~~~~sy~~ 92 (465)
++...+.+-+|+.+|.+|++-|.-+++||+|....||+ ++..++.++.++.||+.+|++|.-++ +++ +.+.||.+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 34556789999999999999999999999999988887 99999999999999999999996554 333 24579999
Q ss_pred HHHHHcCCC-ceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCc
Q 038741 93 AVKTYLGGR-KHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNI 171 (465)
Q Consensus 93 l~~~~~G~~-~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l 171 (465)
+++..+++. |+..+.+.+...+...|+.|++..+|.+..- ++.. ..+.+-|+++.+..++|.+++|++
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~-----fP~~------svd~~sWm~i~~a~LLpc~FLk~L 258 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSC-----FPGL------SVDKASWMMITSASLLPCSFLKDL 258 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhcc-----CCCC------CccccchhhhhhHHHhhhHHHHHH
Confidence 999998876 5688999999999999999999999987743 3222 355677899999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCC-CcccccchhhHHHHHHHHHHHhccchhHHHHHH
Q 038741 172 HKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGP-NLTAADKTWGMFSAIGNIAFACAYLQILIEIQD 250 (465)
Q Consensus 172 ~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 250 (465)
|..+.+|++.++..++.-.+++..|+...- +|++ +.....+.-+++..+|+++|+|+.|...|.+..
T Consensus 259 k~VS~lSf~ct~sH~viN~i~v~YCLs~~~------------dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEG 326 (524)
T KOG4303|consen 259 KIVSRLSFFCTISHLVINLIMVLYCLSFVS------------DWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEG 326 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hccceeEEEEEEcccCceEEEEEEEeeeceeecccccc
Confidence 999999999999888766666666654321 1222 233344555788999999999999999999999
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhccccHH
Q 038741 251 TLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVF 330 (465)
Q Consensus 251 ~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~ 330 (465)
+|++| .+|+-++..+-+...++-..+|..||++||+.+++.|.+|+++ ..+..++++++++..++|||+=++...
T Consensus 327 NM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~KALLSYPLPfyAAv 401 (524)
T KOG4303|consen 327 NMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVVKALLSYPLPFYAAV 401 (524)
T ss_pred ccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHHHHHHcCCchHHHHH
Confidence 99999 9999999999999999999999999999999999999999944 356779999999999999999888888
Q ss_pred HHHHHHhhccCCCCccCCCccccccCCCCccccc-chhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHHhhh
Q 038741 331 YVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSV-NLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFP 409 (465)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~filP 409 (465)
|.+|+-+-+..|+.+| |.-|...++ +.+-+.+|..++..+.++|+.+|.|..+++++|+++++.++|+.|
T Consensus 402 elLe~nlF~g~p~t~F---------pscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP 472 (524)
T KOG4303|consen 402 ELLENNLFLGYPQTPF---------PSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWP 472 (524)
T ss_pred HHHHHhhhcCCCCCCC---------ceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHH
Confidence 8888866544444433 211111111 133455799999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 038741 410 LEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLYKALHTYKP 460 (465)
Q Consensus 410 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~si~~ii~~~~~~~~ 460 (465)
+++|+++..+....++...+..+++.|..+++-|.+-|-..+|+++++..+
T Consensus 473 ~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 473 ALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred HHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence 999999976666555556777888889999999999999999999987654
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-31 Score=267.25 Aligned_cols=396 Identities=18% Similarity=0.174 Sum_probs=282.2
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc-ccHHHHHHHH
Q 038741 19 SKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRN-HTYRAAVKTY 97 (465)
Q Consensus 19 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~-~sy~~l~~~~ 97 (465)
.+.+.+..+++.++.++++|+|+|++|++++..|++++++.+++.+.+++++.+++.|+..+. ++. .++.+++++.
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~---~~~~~~~~~~~~~~ 81 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSS---PNGKASITSLVEDY 81 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCcccHHHHHHHH
Confidence 344458999999999999999999999999999999999999999999999999999997764 222 4999999999
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHH
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWL 177 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 177 (465)
+||++++++++...+.+++.+.+|.+..++.+.+..++... .. ..+++...+++..++.++++.++...++..
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~-~~------~~~r~~~~lif~~~~~~l~~~~~~~~lk~t 154 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFG-LN------PLPRKLGSLIFALVLAFLSWLGTLAVLKIT 154 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcc-cC------CcchHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 99999999999999999999999999999999999875211 00 144456667777888889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCccc-ccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCC
Q 038741 178 SIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTA-ADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSP 256 (465)
Q Consensus 178 s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~ 256 (465)
+.+....+....++ +.+.....+++. .... ... .........++|+++|||+||+++|++.+||+++
T Consensus 155 s~l~~~~v~~~~~l----~~~~~~~~~~~~--l~~~-----~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~- 222 (415)
T COG0814 155 SLLVFGKVIYLVLL----VVYLIPHWNPAN--LFAL-----PSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKN- 222 (415)
T ss_pred HHHHHHHHHHHHHH----HHHHhcccCHHH--Hhcc-----cccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccc-
Confidence 99988876642222 222221111100 0000 011 2344478899999999999999999999999988
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Q 038741 257 PENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESW 336 (465)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~ 336 (465)
++++.+|+...+..+..++|..+++.+|..+|+++.+|++++.++.+. ...+......+...++|.+.++.+......
T Consensus 223 -~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSF 300 (415)
T COG0814 223 -SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNIS-LLSALAGVINSPILSIALNIFALFAIATSF 300 (415)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 445599999999999999999999999999999999999999854432 223333333333355555555555433322
Q ss_pred hhc---cCCC-CccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHHhhhHHH
Q 038741 337 TST---RWPK-SKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFPLEM 412 (465)
Q Consensus 337 ~~~---~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~filP~l~ 412 (465)
+.. .++. ++.... +...++| +.+....+.......+......+...|..+.+++.+|+...+.+.++.|...
T Consensus 301 lgv~lg~~~~~~~~~~~--~~~~~~r--~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~ 376 (415)
T COG0814 301 LGVYLGLFEGLADLFKK--SNSKPGR--KKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKL 376 (415)
T ss_pred hCchhhHHHhhhHHHHh--ccCcccc--hhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 110 0000 000000 0000111 0011233444566788888889999999999999999999999999999998
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHHHHHHH
Q 038741 413 YIAQKNIKRGTSWWFGLQLLNLVCFLAALG 442 (465)
Q Consensus 413 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (465)
+.+....++.+.++...+.+.++|++..+.
T Consensus 377 ~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~ 406 (415)
T COG0814 377 IYKLPALKVYGGNFLLLLLVLLFGILVILS 406 (415)
T ss_pred cCCCCceeecCCCchhHHHHHHHHHHHHHH
Confidence 888764444333222334444444444333
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.93 E-value=3.9e-23 Score=203.39 Aligned_cols=351 Identities=13% Similarity=0.117 Sum_probs=249.0
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHc
Q 038741 19 SKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYL 98 (465)
Q Consensus 19 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~ 98 (465)
.+++++.++++..+.++++|+|+|++|.+.++.|+.++++.+++++..+.||+.++.|...+. ++..++.+++++.+
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~---~~g~~~~tma~~~L 83 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY---RIGSSFDTITKDLL 83 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHc
Confidence 456778999999999999999999999999999999999999999999999999999985543 35669999999999
Q ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhc--CCCcCchhH
Q 038741 99 GGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQ--IPNIHKLSW 176 (465)
Q Consensus 99 G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~~ 176 (465)
||+|+.+..++..+..|+.+++|+.-+++.+++.+++. .. +.+.+.-.++++++.-.+.. .|..++...
T Consensus 84 G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~-------~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~ 154 (414)
T PRK10483 84 GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SL-------NVPARAAGFGFALLVAFVVWLSTKAVSRMTA 154 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CC-------CCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999887641 10 11212222333333222222 234444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCC
Q 038741 177 LSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSP 256 (465)
Q Consensus 177 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~ 256 (465)
.-+.+.+..+. +.+. .+...++.+ . ..+.+ ......+.....++|++++||+.|+++|++.+.+++.
T Consensus 155 ~l~~~~i~~f~---~~~~-~l~~~i~~~---~-L~~~~----~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d- 221 (414)
T PRK10483 155 IVLGAKVITFF---LTFG-SLLGHVQPA---T-LFNVA----ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKD- 221 (414)
T ss_pred HHHHHHHHHHH---HHHH-HHHhhcCHH---H-Hhccc----cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcC-
Confidence 44444433321 1111 111111100 0 00000 0111112246789999999999999999999999864
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC-------CCcc---cc---CccCchHHHHHHHHHHHHHHHHhhh
Q 038741 257 PENKVMKKANVIATLTATTLYMLCGCFGYAALGNHA-------PGNL---LA---GFYKPFWLVDMANSFIVVHLLGAYQ 323 (465)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~-------~~~i---l~---~~~~~~~~~~~~~~~~~~~~~~s~p 323 (465)
.+|.+|++..+..+..++|+..=......-+.+. .+|+ ++ +..+..+...+...+..+.+.+||-
T Consensus 222 --~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 222 --PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999995544444333211 1221 12 2112335666788899999999999
Q ss_pred hccccHHHHHHHHhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHcc-chHHHHHHHhhhhhh
Q 038741 324 VMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALP-FFNEVLGLLGALAYW 402 (465)
Q Consensus 324 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp-~~~~i~~l~Ga~~~~ 402 (465)
-....++|.+.|.++.. ++ ...|........+++.++|...| .|-..+++.|.. ..
T Consensus 300 Gv~LGL~d~l~D~~k~~--~~--------------------~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~ 356 (414)
T PRK10483 300 GVTLGLFDYLADLFGFD--DS--------------------AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-AT 356 (414)
T ss_pred HHHHHHHHHHHHHhCCC--Cc--------------------cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HH
Confidence 88888999998887532 10 02233345578889999999999 599999999966 67
Q ss_pred hHHHhhhHHHHHHHhcc
Q 038741 403 PLTVYFPLEMYIAQKNI 419 (465)
Q Consensus 403 ~l~filP~l~~l~~~~~ 419 (465)
.+.-++|+++.++.||+
T Consensus 357 il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 357 IWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88899999999999865
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.93 E-value=1.2e-22 Score=201.96 Aligned_cols=350 Identities=16% Similarity=0.209 Sum_probs=246.1
Q ss_pred cccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCC
Q 038741 22 TGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGR 101 (465)
Q Consensus 22 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~ 101 (465)
+.+.+++++.+.++++|+|+|+||.+.+..|..++.+.+++++.++++++.++.|...+. ++..+|.+++++.+||+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~---~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNT---PEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCHHHHHHHHhChH
Confidence 347899999999999999999999999999999999999999999999999999976543 34679999999999999
Q ss_pred ceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcC--CCcCchhHHHH
Q 038741 102 KHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQI--PNIHKLSWLSI 179 (465)
Q Consensus 102 ~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~l~~~s~ 179 (465)
|+++..+...+..++.+++|+.-.++.+++.++..... +.+++.-.+++.++.-.+... |-.++....-.
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~--------~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv 150 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT--------DLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLV 150 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999988752110 222222223333222222211 11222222222
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCCchh
Q 038741 180 IAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPEN 259 (465)
Q Consensus 180 ~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~ 259 (465)
...+..+ ...+. ....+-+.+ .... ......++......+|++++||..|.++|++.+.+++. +
T Consensus 151 ~~~i~~~------~~l~~-~~~p~~~~~-~L~~-----~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~ 214 (394)
T PF03222_consen 151 FGMIISF------IILVV-YLIPHWNPS-NLLD-----APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---P 214 (394)
T ss_pred HHHHHHH------HHHHH-HHhhhcCHH-Hhhc-----cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---H
Confidence 2222111 11111 111111000 0000 01123344567899999999999999999999999854 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcc-----------cCCCCC--CccccCccCchHHHHHHHHHHHHHHHHhhhhcc
Q 038741 260 KVMKKANVIATLTATTLYMLCGCFGYAA-----------LGNHAP--GNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMA 326 (465)
Q Consensus 260 ~~~~~~~~~a~~~~~i~Y~~~g~~gy~~-----------fG~~~~--~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~ 326 (465)
||.+|++..+..+..++|+..-+..-.. -|++.. ...+.+..++.+....+.++..+.+.+||--..
T Consensus 215 ~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~ 294 (394)
T PF03222_consen 215 KKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVY 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998864433221 111111 112233334456777889999999999999888
Q ss_pred ccHHHHHHHHhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHcc-chHHHHHHHhhhhhhhHH
Q 038741 327 QPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALP-FFNEVLGLLGALAYWPLT 405 (465)
Q Consensus 327 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp-~~~~i~~l~Ga~~~~~l~ 405 (465)
..++|.+.+.++. +++ ...|.........++.++|...| .|...+++.| ...+.+.
T Consensus 295 lgl~d~l~d~~k~--~~~--------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~ 351 (394)
T PF03222_consen 295 LGLFDFLADLFKL--KNN--------------------SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILL 351 (394)
T ss_pred HHHHHHHHHHHcC--Ccc--------------------ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHH
Confidence 8888988887743 110 12334455666777899999999 7889999999 8899999
Q ss_pred HhhhHHHHHHHhccCC
Q 038741 406 VYFPLEMYIAQKNIKR 421 (465)
Q Consensus 406 filP~l~~l~~~~~~~ 421 (465)
.++|+++.+|.+|+++
T Consensus 352 ~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 352 GILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHHHHHcccC
Confidence 9999999999975554
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.92 E-value=1.8e-22 Score=198.36 Aligned_cols=351 Identities=15% Similarity=0.099 Sum_probs=242.6
Q ss_pred ccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCC
Q 038741 21 RTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGG 100 (465)
Q Consensus 21 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~ 100 (465)
+|.+....+..+.++++|+|+|+||.+-++.|+.++++.+++++..+.||+.++.|+..+. ++..++.+++++.+||
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~---~~g~~l~tma~~~LG~ 83 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY---PVGSSFNTITKDLIGN 83 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHcCh
Confidence 3347888999999999999999999999999999999999999999999999999986543 4567999999999999
Q ss_pred CceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhc--CCCcCchhHHH
Q 038741 101 RKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQ--IPNIHKLSWLS 178 (465)
Q Consensus 101 ~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~~~s 178 (465)
+|+.+..++..+..|+.+++|+.-+++.+++.++... +. +.+.+.-.++++++.-++.. .|..++....-
T Consensus 84 ~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----~~----~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l 155 (415)
T PRK09664 84 TWNIISGITVAFVLYILTYAYISANGAIISETISMNL----GY----HANPRIVGICTAIFVASVLWISSLAASRITSLF 155 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----cC----CCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 9999999999999999999999999999998875311 00 11212222333333222222 23344444444
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccc-hhhHHHHHHHHHHHhccchhHHHHHHhhcCCCc
Q 038741 179 IIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADK-TWGMFSAIGNIAFACAYLQILIEIQDTLKSSPP 257 (465)
Q Consensus 179 ~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~ 257 (465)
+.+.+..+. +.+ ......++.+ .....++ ...... .-....++|++++||+.|+++|++.+.+++.
T Consensus 156 ~~~~ii~f~---~~~-~~l~~~i~~~----~L~~~~~---~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d-- 222 (415)
T PRK09664 156 LGLKIISFV---IVF-GSFFFQVDYS----ILRDATS---TTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR-- 222 (415)
T ss_pred HHHHHHHHH---HHH-HHHhhcccHH----HHhcCcc---ccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc--
Confidence 333332221 111 1111111100 0000000 000001 1236779999999999999999999999854
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh--hhhhhc---------ccCCCCCCcccc--CccCchHHHHHHHHHHHHHHHHhhhh
Q 038741 258 ENKVMKKANVIATLTATTLYMLC--GCFGYA---------ALGNHAPGNLLA--GFYKPFWLVDMANSFIVVHLLGAYQV 324 (465)
Q Consensus 258 ~~~~~~~~~~~a~~~~~i~Y~~~--g~~gy~---------~fG~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~s~pl 324 (465)
.+|.+|++..+..+..++|... .+.|-. ..|++..+-+.. +-....+......++..+.+.+||--
T Consensus 223 -~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlG 301 (415)
T PRK09664 223 -KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFG 301 (415)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHH
Confidence 4788899988888888888653 222311 222222221111 11233467778889999999999998
Q ss_pred ccccHHHHHHHHhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccc-hHHHHHHHhhhhhhh
Q 038741 325 MAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPF-FNEVLGLLGALAYWP 403 (465)
Q Consensus 325 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Ga~~~~~ 403 (465)
....++|.+.|.++.. ++ ...|........+++.+.|...|+ |-..++..|.. .+.
T Consensus 302 v~LGL~D~l~D~~~~~--~~--------------------~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~i 358 (415)
T PRK09664 302 VTLGLFDYLADLFKID--NS--------------------HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATI 358 (415)
T ss_pred HHHHHHHHHHHHhCCC--Cc--------------------cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHH
Confidence 8888999988877532 11 022334455678899999999994 99999999986 679
Q ss_pred HHHhhhHHHHHHHhcc
Q 038741 404 LTVYFPLEMYIAQKNI 419 (465)
Q Consensus 404 l~filP~l~~l~~~~~ 419 (465)
+.-++|+++-++.||+
T Consensus 359 l~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 359 WAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999865
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.92 E-value=3e-22 Score=198.03 Aligned_cols=344 Identities=14% Similarity=0.143 Sum_probs=243.8
Q ss_pred cHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCce
Q 038741 24 TVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKH 103 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~ 103 (465)
+...+++.+.++++|+|+|+||.+.+..|++++++.+++++.+..|++..+.|+..+. ++..++.+++++.+||+|+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~---~~~~~~~~~a~~~LG~~g~ 80 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV---PADTGLGTLAKRYLGRYGQ 80 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCCCHHHHHHHHhChHHH
Confidence 6889999999999999999999999999999999999999999999999999975442 3456899999999999999
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcC--CCcCchhHHHHHH
Q 038741 104 KICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQI--PNIHKLSWLSIIA 181 (465)
Q Consensus 104 ~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~l~~~s~~~ 181 (465)
++..+...+..|..+.+|...+++.+.+..+++..+ ..+.....+.+.++.-..... |-.++....-..+
T Consensus 81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~ 152 (403)
T PRK15132 81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSA 152 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999999999999988887652111 111122223333322112222 2222222222222
Q ss_pred HHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCCchhhH
Q 038741 182 AIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKV 261 (465)
Q Consensus 182 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~ 261 (465)
.+..+. . ....+...++.+ .... .+. +.......+|++++||+.|+++|++.+.+++. .+|
T Consensus 153 ~ii~~~---~-~~~~l~p~~~~~----~L~~-------~~~-~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~ 213 (403)
T PRK15132 153 KIIFLV---V-MLALMMPHIHKV----NLLT-------LPL-QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRK 213 (403)
T ss_pred HHHHHH---H-HHHHHHHhcCHH----HHhc-------CCc-cccHHHHHHHHHHHHhhCCcccHHHHHHhCcC---HHH
Confidence 221111 1 111111111100 0000 000 00127789999999999999999999999864 488
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccCCCC-----CC-----ccccCc---cCchHHHHHHHHHHHHHHHHhhhhcccc
Q 038741 262 MKKANVIATLTATTLYMLCGCFGYAALGNHA-----PG-----NLLAGF---YKPFWLVDMANSFIVVHLLGAYQVMAQP 328 (465)
Q Consensus 262 ~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~-----~~-----~il~~~---~~~~~~~~~~~~~~~~~~~~s~pl~~~p 328 (465)
.+|++..+..+..++|+..=......-+.+. ++ ++++.+ .+..+...++..+..+.+.+||--....
T Consensus 214 ~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lg 293 (403)
T PRK15132 214 LRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALG 293 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987666665544431 11 223322 1334677788899999999999988888
Q ss_pred HHHHHHHHhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHcc-chHHHHHHHhhhhhhhHHHh
Q 038741 329 VFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALP-FFNEVLGLLGALAYWPLTVY 407 (465)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp-~~~~i~~l~Ga~~~~~l~fi 407 (465)
++|.+.+.+++. ++ ...|.....+..+++.++|+..| .|....++.|. ..+.+.++
T Consensus 294 l~d~l~d~~~~~--~~--------------------~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~i 350 (403)
T PRK15132 294 LFDYLADLFQRR--NT--------------------VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALL 350 (403)
T ss_pred HHHHHHHHHccC--cc--------------------ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHH
Confidence 899888877431 10 02245566788899999999999 68889999986 57899999
Q ss_pred hhHHHHHHHhccC
Q 038741 408 FPLEMYIAQKNIK 420 (465)
Q Consensus 408 lP~l~~l~~~~~~ 420 (465)
+|+++.+|.+|++
T Consensus 351 lP~~m~~~~r~~~ 363 (403)
T PRK15132 351 LPSLLVWQSRKQN 363 (403)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999998654
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.91 E-value=3.1e-22 Score=200.34 Aligned_cols=343 Identities=15% Similarity=0.114 Sum_probs=245.4
Q ss_pred HHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCceehhHH
Q 038741 29 SAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGL 108 (465)
Q Consensus 29 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~i 108 (465)
+..++++++|+|++++|..+++.|...+.+.+++.+.++.++...+.|+..+. ++..++.+++++.+||++++++.+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~---p~~~~~~~~~~~~~G~~~g~~~~~ 79 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY---PGGASFNTIAKDLLGKTGNIIAGL 79 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCHHHHHHHHhCHHHHHHHHH
Confidence 44568999999999999999999999999999999999999999999975442 356799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHHHHHHHHHHHH
Q 038741 109 VQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSY 188 (465)
Q Consensus 109 ~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 188 (465)
..++.++..+.+|.+..++++.++++.... . ..+.....+++.+++.++. .+..+..+.++.+.+...+..
T Consensus 80 ~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~----~----~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 80 SLLFVLYILTYAYISGGGSILSRLIGEYFG----F----PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcC----C----CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888763211 1 1122223333333334433 445677777776666655432
Q ss_pred HHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCCchhhHHHHHHHH
Q 038741 189 AGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVI 268 (465)
Q Consensus 189 ~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~~~~~~~~ 268 (465)
..+.+...+.+ . +. + ...+. + .......++..+++...++|.+|.+++++.+|++++ +||.+|++..
T Consensus 151 l~~~ii~~~~~-~--~~-~-~~~~~--~---~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~ 217 (381)
T TIGR00837 151 FALVFSGLLPH-V--KG-D-LLLDV--A---LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILI 217 (381)
T ss_pred HHHHHHHHHhh-c--cH-H-HHhcC--c---cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHH
Confidence 22211111111 1 10 0 00000 0 001123367789999999999999999999999854 3899999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCC-------Cc------cccCccCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Q 038741 269 ATLTATTLYMLCGCFGYAALGNHAP-------GN------LLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIES 335 (465)
Q Consensus 269 a~~~~~i~Y~~~g~~gy~~fG~~~~-------~~------il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~ 335 (465)
+..+++++|+.+........+.+.- +| .+.+.....+...+...+..+.+..|+.-.....++.+.+
T Consensus 218 g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~ 297 (381)
T TIGR00837 218 GSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLAD 297 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987766666554421 11 1112112335667888899999999999888888888777
Q ss_pred HhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchH-HHHHHHhhhhhhhHHHhhhHHHHH
Q 038741 336 WTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFN-EVLGLLGALAYWPLTVYFPLEMYI 414 (465)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~-~i~~l~Ga~~~~~l~filP~l~~l 414 (465)
.+++. + + + .+|.....+..++..++|.+.|+.. ..++..| +....+.+++|+++++
T Consensus 298 ~~~~~--~------------~------~--~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~ 354 (381)
T TIGR00837 298 LFKFD--D------------S------K--KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAW 354 (381)
T ss_pred HhCCC--c------------c------c--CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 66431 1 0 0 1234456677788889999999655 8999999 8889999999999999
Q ss_pred HHhcc
Q 038741 415 AQKNI 419 (465)
Q Consensus 415 ~~~~~ 419 (465)
+.+|+
T Consensus 355 ~~r~~ 359 (381)
T TIGR00837 355 KARKK 359 (381)
T ss_pred HHHhc
Confidence 98754
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.88 E-value=2e-19 Score=177.07 Aligned_cols=391 Identities=12% Similarity=0.100 Sum_probs=256.7
Q ss_pred cHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCce
Q 038741 24 TVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKH 103 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~ 103 (465)
.+......+.++++|+|+|+||-.....|.++.++.+++++.+++++++.|.|...+. .++..++.+++++.+||+|+
T Consensus 20 ~d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~--~~~~~~i~~v~~~~lG~~g~ 97 (443)
T PRK13629 20 SDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG--SNPSGNITETVEEHFGKTGG 97 (443)
T ss_pred ccchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCCHHHHHHHHcChhHH
Confidence 4566679999999999999999999999999999999999999999999999964332 13456999999999999999
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCC--CcCchhHHHHHH
Q 038741 104 KICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIP--NIHKLSWLSIIA 181 (465)
Q Consensus 104 ~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~--~l~~l~~~s~~~ 181 (465)
.+..++.++..+..+.+|.....+.+.+.+.+. .+. . ..++....+++.++........ -+.+....-+..
T Consensus 98 ~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~q-l~~---~---~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~ 170 (443)
T PRK13629 98 VVITFLYFFAICPLLWIYGVTITNTFMTFWENQ-LGF---A---PLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWP 170 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCc---C---CccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999988888887765432 110 0 1122222233333322222222 122222222222
Q ss_pred HHHHHHHHHHhhhhhhhhhhccCCCCccccccccC--CCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCC---
Q 038741 182 AIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIG--PNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSP--- 256 (465)
Q Consensus 182 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~--- 256 (465)
.+..+. .....+....+.+ .....+++ ++............++|++++||+.|+++|++...+|+..
T Consensus 171 ~i~~l~----~l~~~LiP~w~~~----~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~ 242 (443)
T PRK13629 171 FIASLV----LISLSLIPYWNSA----VIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKD 242 (443)
T ss_pred HHHHHH----HHHHHHHHHcCHH----HHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccc
Confidence 222221 1111111111100 00000000 0000001112467899999999999999999999953321
Q ss_pred --ch--hhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC-----CCcc--cc----CccC---c-----hHHHHHHHHH
Q 038741 257 --PE--NKVMKKANVIATLTATTLYMLCGCFGYAALGNHA-----PGNL--LA----GFYK---P-----FWLVDMANSF 313 (465)
Q Consensus 257 --~~--~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~-----~~~i--l~----~~~~---~-----~~~~~~~~~~ 313 (465)
++ .+|.+|++..+..+..++|+.+-+.+...-+++. ++|+ +. .+++ . .+......++
T Consensus 243 ~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~if 322 (443)
T PRK13629 243 FGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASII 322 (443)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHH
Confidence 13 5889999999999999999998887777666542 1222 22 2222 1 3466677788
Q ss_pred HHHHHHHhhhhccccHHHHHHHHhhc-cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHH
Q 038741 314 IVVHLLGAYQVMAQPVFYVIESWTST-RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEV 392 (465)
Q Consensus 314 ~~~~~~~s~pl~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i 392 (465)
..+.+..||--....++|.+...+.+ ..+. ++ .+ .+.+..+.....++.+.+++++..-|++-.+
T Consensus 323 a~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~----~~---~~-------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~ 388 (443)
T PRK13629 323 ALVAIFKSFFGHYLGTLEGLNGLILKFGYKG----DK---TK-------VSLGKLNTISMIFIMGSTWVVAYANPNILDL 388 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cc---cc-------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 88899999998888899999888742 1111 00 00 1223567777888999999999999999999
Q ss_pred HHHHhhhhhhhHHHhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038741 393 LGLLGALAYWPLTVYFPLEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHG 450 (465)
Q Consensus 393 ~~l~Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~si~~ 450 (465)
++-+|+-..+.+.|++|...-.|...-++.+.+. .+.+.++.|+....+.+++
T Consensus 389 i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~~~-----~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 389 IEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRL-----DNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHccHHHHHhCCCc-----hhHHHHHHHHHHHHHHHHh
Confidence 9988888888999999999998886433333221 1344455555555555444
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.82 E-value=6.3e-18 Score=167.82 Aligned_cols=365 Identities=11% Similarity=0.031 Sum_probs=248.6
Q ss_pred cHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCce
Q 038741 24 TVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKH 103 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~ 103 (465)
.+....+.+.++++|+|+|++|...++.||+..++..++...+.+++.+++.|..... ++ ...++.|++++.|||+++
T Consensus 4 ~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~-~~-p~~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 4 TDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSS-KN-PCEDITEVVEEHFGKNWG 81 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-CCCCHHHHHHHHcCHHHH
Confidence 4667788999999999999999999999999999999999999999999999964332 11 256999999999999999
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHHHHHHH
Q 038741 104 KICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAI 183 (465)
Q Consensus 104 ~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 183 (465)
.+..+...+..+..+.+|....++.+.+...... ... .+.+....+..++++-.......+.+..++.+-..
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~-~~~-------~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~ 153 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQL-GTA-------PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVF 153 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-------CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 9999999999999999999999999888876421 110 11121111112222222233345555555444332
Q ss_pred HHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHh----hcCCCchh
Q 038741 184 MSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDT----LKSSPPEN 259 (465)
Q Consensus 184 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~----m~~~~~~~ 259 (465)
..+. ..+...+.- ..+-+.+ .... .+.......+...+++..++||.+|+++|++..+ .++|..++
T Consensus 154 ~~ii---~l~~l~~~l-ip~~~~~-~L~~-----~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~ 223 (397)
T TIGR00814 154 PLVL---ILVLLSLYL-IPHWNGA-NLTT-----FPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAE 223 (397)
T ss_pred HHHH---HHHHHHHHH-HHHcCHH-HHhc-----CCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHH
Confidence 2221 111111111 1110000 0000 0001122346889999999999999999999833 43221135
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC-----CCcc--cc---CccCchHHHHHHHHHHHHHHHHhhhhccccH
Q 038741 260 KVMKKANVIATLTATTLYMLCGCFGYAALGNHA-----PGNL--LA---GFYKPFWLVDMANSFIVVHLLGAYQVMAQPV 329 (465)
Q Consensus 260 ~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~-----~~~i--l~---~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 329 (465)
+|.+|++..+..+..++|+..-+.+....+.+. ++|+ +. |..+..+...+...+..+.+..||--....+
T Consensus 224 ~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~ 303 (397)
T TIGR00814 224 RKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGA 303 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 889999999999999999998888888777652 1221 22 1112235566777888889999999888899
Q ss_pred HHHHHHHhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHHHhhh
Q 038741 330 FYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLTVYFP 409 (465)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~filP 409 (465)
+|.+.+.+.+..+.. ++ + .+++..+.....++.+.++.+|..-|+.-.+++-+|+-..+.+.|++|
T Consensus 304 ~e~l~~l~~~~~~~~---~~----~-------~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p 369 (397)
T TIGR00814 304 REGLNGIVLNSLKMK---GK----K-------INIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMP 369 (397)
T ss_pred HHHHHHHHHHHhccc---cc----c-------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHH
Confidence 999999873211110 00 0 122355667777888999999999999999999777787889999999
Q ss_pred HHHHHHHhccCCC
Q 038741 410 LEMYIAQKNIKRG 422 (465)
Q Consensus 410 ~l~~l~~~~~~~~ 422 (465)
...-.|...-++.
T Consensus 370 ~~~~~~v~~l~~~ 382 (397)
T TIGR00814 370 MYAIYKVPALKKY 382 (397)
T ss_pred HHHHHccHHHHHh
Confidence 9999988643333
No 16
>PRK10249 phenylalanine transporter; Provisional
Probab=99.63 E-value=2.3e-12 Score=131.92 Aligned_cols=381 Identities=14% Similarity=0.076 Sum_probs=205.3
Q ss_pred CcccccccCCCCCCCCCCccccccHHHHHHHHHhhhhhhhhhhHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038741 1 MDAQAYKVADGGVDDDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIA-QLGWITGVSTLLIFSSISLYSSGLLADCYR 79 (465)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~ 79 (465)
|.+..++..++..+++++.+|+.+.++..+..++.++|+|++..|-... .+|- ..++..++.+++....+.-+.|...
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~ 79 (458)
T PRK10249 1 MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVV 79 (458)
T ss_pred CCCccccchhhccCCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566788889999999999999999999886554 5565 4667777778888777777777543
Q ss_pred CCCCCCccccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHH
Q 038741 80 APLSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIG 159 (465)
Q Consensus 80 ~~~~~~~~~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (465)
.. ++.-+..+.+++.+|+..++++.+..++.......+.....+.++..+.+ .. ..+.....
T Consensus 80 ~~---P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~-------------~~--~~~~~~~~ 141 (458)
T PRK10249 80 EE---PVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFP-------------DV--PTWIWAAA 141 (458)
T ss_pred hC---CCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------cC--cHHHHHHH
Confidence 22 34456777899999999999999998877665555555555555543321 01 11221111
Q ss_pred H-HHHHHhcCCCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCC-CCccccccccCCCcccccchhhHHHHHHHHHH
Q 038741 160 I-VEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHG-ETTSLTGEEIGPNLTAADKTWGMFSAIGNIAF 237 (465)
Q Consensus 160 ~-i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 237 (465)
+ +++-+.-.+..|..+.+.....+..+...+..++..+.......+ .+..... .+.........+.++..++....|
T Consensus 142 ~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~ 220 (458)
T PRK10249 142 FFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDN-LWRYGGFFATGWNGLILSLAVIMF 220 (458)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhh-ccCCCCCCCCcHHHHHHHHHHHHH
Confidence 1 122222333444444443333222221111111111111111111 0000000 000000001223457889999999
Q ss_pred HhccchhHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCC----Cccc---cCccCchHHHHHH
Q 038741 238 ACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAP----GNLL---AGFYKPFWLVDMA 310 (465)
Q Consensus 238 af~~~~~i~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~----~~il---~~~~~~~~~~~~~ 310 (465)
+|.+-+......+|+||| +|+.+|++..+.....++|...........+++.. +... ++. ..++.....
T Consensus 221 af~G~e~~~~~a~E~~~P---~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~ 296 (458)
T PRK10249 221 SFGGLELIGITAAEARDP---EKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNL-DSNVVASAL 296 (458)
T ss_pred HHcCHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHc-CchhHHHHH
Confidence 999999999999999998 47899999999999999998755444333332211 1111 111 112333344
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHHhhc-cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHcc--
Q 038741 311 NSFIVVHLLGAYQVMAQPVFYVIESWTST-RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALP-- 387 (465)
Q Consensus 311 ~~~~~~~~~~s~pl~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp-- 387 (465)
.....+..+.+..-.+...-+.+...-++ ..|+ .+.+.+.. +.+...+.+...+..+..++....|
T Consensus 297 ~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~--~~~kv~~~---------~~P~~All~~~~i~~l~~l~~~~~~~~ 365 (458)
T PRK10249 297 NFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPK--FLTRVSRR---------GVPINSLMLSGAITSLVVLINYLLPQK 365 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCH--HHHHhCCC---------CCCHHHHHHHHHHHHHHHHHHHhChHH
Confidence 44444444444433222222222222211 1121 11111111 1224444445554444444443444
Q ss_pred chHHHHHHHhhhhhhhHHHhhhHHHHHHHhc
Q 038741 388 FFNEVLGLLGALAYWPLTVYFPLEMYIAQKN 418 (465)
Q Consensus 388 ~~~~i~~l~Ga~~~~~l~filP~l~~l~~~~ 418 (465)
.++.+.++.+. ...+.|++|++.+++.+|
T Consensus 366 ~f~~l~~~~~~--~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 366 AFGLLMALVVA--TLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 24444444432 467999999999999863
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.60 E-value=5e-12 Score=129.05 Aligned_cols=242 Identities=13% Similarity=0.040 Sum_probs=145.7
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHc
Q 038741 19 SKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYL 98 (465)
Q Consensus 19 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~ 98 (465)
++|+.+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.........|..... ++.-..-..+++.+
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~---P~~GG~y~y~~~~~ 79 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFS---RKSGGMGGYAEYAF 79 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhC---CCCCchHHHHHHHc
Confidence 45677899999999999999999999999988876 456666667777666666666643221 23334456678999
Q ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHH-HHHHhcCCCcCchhHH
Q 038741 99 GGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIV-EMFLSQIPNIHKLSWL 177 (465)
Q Consensus 99 G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i-~~pl~~~~~l~~l~~~ 177 (465)
|++.+++..+..++.......++.....+++..+.+. .. + . ...+.+...++ .+-..-.+..+....+
T Consensus 80 G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~-----~~-~---~--~~~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 80 GKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA-----TL-S---P--VQICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cc-c---h--HHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999887766655555554445555544320 00 0 0 01111111111 1111223334444444
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCCc
Q 038741 178 SIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPP 257 (465)
Q Consensus 178 s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~ 257 (465)
..+.+...+...++++...... ...+ .. .+ .+++ .......++..++....|+|.+-+....+.+|+|||
T Consensus 149 ~~i~~~~~l~~l~~~~i~~~~~-~~~~--~~-~~--~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P-- 218 (438)
T PRK10655 149 SSVTVWGVIIPVVGLSIIGWFW-FSPS--LY-VA--AWNP--HHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENP-- 218 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCcc--cc-cC--CcCc--cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCc--
Confidence 4333332222111111111111 1111 10 01 1110 111122456777888999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 038741 258 ENKVMKKANVIATLTATTLYMLCGCFGYA 286 (465)
Q Consensus 258 ~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~ 286 (465)
+|+.+|++..+..++.++|++.......
T Consensus 219 -~r~iPrAi~~~~~~~~~~Y~l~~~~~~~ 246 (438)
T PRK10655 219 -ERNVPIAVLGGTLGAAVIYIVSTNVIAG 246 (438)
T ss_pred -cccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999987655443
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.56 E-value=2.3e-11 Score=124.31 Aligned_cols=243 Identities=12% Similarity=0.035 Sum_probs=143.7
Q ss_pred CCccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHH
Q 038741 17 GRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKT 96 (465)
Q Consensus 17 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~ 96 (465)
.+++|+.+.++.+...+++++|+|++.+|...++.|.. .+...++.++........+.|..... ++.-..-+.+++
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~---P~aGG~y~~~~~ 79 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLD---PSPGGSYAYARR 79 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC---CCCCChhHHHHH
Confidence 34667789999999999999999999999998887642 34445555555555555555543221 222233444888
Q ss_pred HcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchh-HHHHHH--HHHHhcCCCcCc
Q 038741 97 YLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFM-IGIGIV--EMFLSQIPNIHK 173 (465)
Q Consensus 97 ~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i--~~pl~~~~~l~~ 173 (465)
.+|+..++++.+..++.......+......++...+.+. . +.++.. ++...+ .+-..-.+..|.
T Consensus 80 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~ln~~gvk~ 146 (445)
T PRK10644 80 CFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----L--------KDPLVLTITCVVVLWIFVLLNIVGPKM 146 (445)
T ss_pred HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----c--------CCcHHHHHHHHHHHHHHHHHHHhchHH
Confidence 999999999998888766555555554454555443221 0 011111 111111 111222333455
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhc
Q 038741 174 LSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLK 253 (465)
Q Consensus 174 l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 253 (465)
...+..+.+...+...++.+...+.. ...+.. .++ +. .........+..++....|+|.+-+....+.+|+|
T Consensus 147 ~~~i~~i~~~~~~i~l~~~~~~~~~~-~~~~~~---~~~--~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k 218 (445)
T PRK10644 147 ITRVQAVATVLALIPIVGIAVFGWFW-FRGETY---MAA--WN--VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK 218 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhc---cCC--cc--ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 55554444433322111111111111 111100 000 10 01112233566778889999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 038741 254 SSPPENKVMKKANVIATLTATTLYMLCGCFGYAA 287 (465)
Q Consensus 254 ~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~ 287 (465)
|| +|+.+|++..+..++.++|.+..+.....
T Consensus 219 ~P---~r~iPrai~~s~~i~~v~Y~l~~~~~~~~ 249 (445)
T PRK10644 219 NP---KRNVPIATIGGVLIAAVCYVLSSTAIMGM 249 (445)
T ss_pred Cc---ccchhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99 47899999999999999999987764433
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.56 E-value=1.8e-11 Score=124.75 Aligned_cols=244 Identities=14% Similarity=0.052 Sum_probs=145.1
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
+++|+.+.++.+...+++++|+|++.+|...++.|-. .+...++.++..........|..... ++.-...+.+++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~---P~~GG~y~y~~~- 76 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKN---PQQGGPIAYAGE- 76 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC---CCCCChhHHHHH-
Confidence 4677889999999999999999999999999988753 44455555555555555555532221 233344445677
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHH-HHHHhcCCCcCchhH
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIV-EMFLSQIPNIHKLSW 176 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i-~~pl~~~~~l~~l~~ 176 (465)
+|++.++++.+..+........++.+...+++..+.+.. .+ .. ...++...++ ++-+...+..|..+.
T Consensus 77 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----~~----~~--~~~~~~~~i~~~~~~ln~~gvk~~~~ 145 (435)
T PRK10435 77 ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----ND----PI--PAGIACIAIVWVFTFVNMLGGTWVSR 145 (435)
T ss_pred HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----CC----hH--HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 799999999887776555555556555666665543210 00 11 1111111111 112223334444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCC
Q 038741 177 LSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSP 256 (465)
Q Consensus 177 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~ 256 (465)
+..+..+..+. ..++..+......++... ..++. ........++..++....|+|.+-+.+....+|+|||
T Consensus 146 i~~i~~~~~li---~~~~~~i~g~~~~~~~~~---~~~~~--~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP- 216 (435)
T PRK10435 146 LTTIGLVLVLI---PVVGTAIVGWHWFDAATY---AANWN--TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP- 216 (435)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHcCHHhh---ccccc--CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc-
Confidence 44433332221 111111111111111000 01111 0112235678889999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 038741 257 PENKVMKKANVIATLTATTLYMLCGCFGYAAL 288 (465)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~f 288 (465)
+|+.+|++..+..++.++|+...+......
T Consensus 217 --~r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 217 --KRTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred --cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 378999999999999999999887655444
No 20
>PRK15049 L-asparagine permease; Provisional
Probab=99.54 E-value=4.3e-11 Score=123.72 Aligned_cols=366 Identities=12% Similarity=0.069 Sum_probs=192.0
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhhHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 19 SKRTGTVWTASAHIVTAIVGSGVLSLAW-GIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 19 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
-+|+.+.++..+..++.++|+|++..|. +.+..|- .+++..++.+++....+.-+.|..... ++.-+..+.+++.
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~---P~aGg~y~y~~~~ 101 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHR---PSSGSFVSYAREF 101 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCHHHHHHHH
Confidence 4667789999999999999999999876 6667775 456677777777777777777754321 3445677788999
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHH-HHHHhcCCCcCchhH
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIV-EMFLSQIPNIHKLSW 176 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i-~~pl~~~~~l~~l~~ 176 (465)
+|++.++++.+..++........-....+.++... +. .. . ...|....+++ ++-+.-.+..|....
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~-----~~-----~--~~~~~~~~~~~~l~~~iN~~gvk~~~~ 168 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GA-----FG-----G--VPQWVFALAALTIVGTMNMIGVKWFAE 168 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-----CC-----C--CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888765443333333333333211 00 00 0 12232222111 222222233444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccc-c-CCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcC
Q 038741 177 LSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEE-I-GPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKS 254 (465)
Q Consensus 177 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 254 (465)
+.....+..+...+..++..+.......+.+....+.. + +..-..+.....+..++....|+|.+-+.+....+|+||
T Consensus 169 i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~kn 248 (499)
T PRK15049 169 MEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKD 248 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcC
Confidence 44333322221111111111111111111110000000 0 000000112234556677899999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCC----Ccc---ccCccCchHHHHHHHHHHHHHHHHhhhhccc
Q 038741 255 SPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAP----GNL---LAGFYKPFWLVDMANSFIVVHLLGAYQVMAQ 327 (465)
Q Consensus 255 ~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~----~~i---l~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~ 327 (465)
| +|+.+|++..++....++|+..........+.+.. +.. .+.. ...+...+.++...+..+.+..-.+.
T Consensus 249 P---~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~-g~~~~~~ii~~~ilia~~ss~ns~~~ 324 (499)
T PRK15049 249 P---QTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKL-GVPYIGSIMNIVVLTAALSSLNSGLY 324 (499)
T ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHc-CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 47799999999999999898876654444333211 111 1111 11123334455555555555443333
Q ss_pred cHHHHHHHHhhc-cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHcc--chHHHHHHHhhhhhhhH
Q 038741 328 PVFYVIESWTST-RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALP--FFNEVLGLLGALAYWPL 404 (465)
Q Consensus 328 p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~l~Ga~~~~~l 404 (465)
..-+.+..+-++ ..| +++.+-++.+.| ...+.+..++.++..++....| .++.++++.+ ....+
T Consensus 325 ~~sR~l~a~Ardg~lP--~~f~kv~k~~~P---------~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li 391 (499)
T PRK15049 325 CTGRILRSMAMGGSAP--SFMAKMSRQHVP---------YAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIA 391 (499)
T ss_pred HHHHHHHHHHhcCCcC--HHHHHhCCCCCC---------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHH
Confidence 333333333221 122 111111111122 3344444444333333433444 2555555554 34688
Q ss_pred HHhhhHHHHHHHhc
Q 038741 405 TVYFPLEMYIAQKN 418 (465)
Q Consensus 405 ~filP~l~~l~~~~ 418 (465)
.|++|++.+++.+|
T Consensus 392 ~y~~~~~~~l~~R~ 405 (499)
T PRK15049 392 SWAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 21
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.53 E-value=4.1e-11 Score=122.68 Aligned_cols=365 Identities=10% Similarity=0.039 Sum_probs=192.7
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLAWGIA-QLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKT 96 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~ 96 (465)
+.+|+-+.++..+..+++++|+|++..|-... ++|- ..++..++.+++......-+.|..... +..-++.+.+++
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~---P~aGg~y~~~~~ 84 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEE---PVAGSFSHFAYK 84 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHH
Confidence 35677789999999999999999999886655 5554 455666667776666666666643221 344467777888
Q ss_pred HcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhH
Q 038741 97 YLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSW 176 (465)
Q Consensus 97 ~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 176 (465)
.+|+..++++.+..++.....+.+.....+++++...+ ..+...+..+... ++-..-....|..+.
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~i~~~-~~~~lN~~gv~~~~~ 150 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-------------EIPTWVSAAVFFV-VINAINLTNVKVFGE 150 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------cCcHHHHHHHHHH-HHHHHHHHhHHHHHH
Confidence 99999999999999988888777777777776654321 0011111111111 111112223444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCC-CcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCC
Q 038741 177 LSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGP-NLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSS 255 (465)
Q Consensus 177 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~ 255 (465)
++.......+...++.++.++.......+.+.......++. +.. .....++..+++...|+|.+-+......+|+|||
T Consensus 151 ~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP 229 (456)
T PRK10238 151 MEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLELVGITAAEADNP 229 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCh
Confidence 44433333322111111111111111111000000000000 011 1123356677888999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhhhh--cccCCCC--CCcc---ccCccCchHHHHHHHHHHHHHHHHhhhhcccc
Q 038741 256 PPENKVMKKANVIATLTATTLYMLCGCFGY--AALGNHA--PGNL---LAGFYKPFWLVDMANSFIVVHLLGAYQVMAQP 328 (465)
Q Consensus 256 ~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy--~~fG~~~--~~~i---l~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p 328 (465)
+|+.+|++..+.....+.|...-.... .-+.+-. .+.. +.+. ...+...+.+..+.+..+.+..-....
T Consensus 230 ---~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~-g~~~~~~i~~~~i~~~~~s~~~~~~~~ 305 (456)
T PRK10238 230 ---EQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHEL-GDTFVANALNIVVLTAALSVYNSCVYC 305 (456)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHc-CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999998888888887766433211 1111100 0111 1111 112333344455555555444333333
Q ss_pred HHHHHHHHhhc-cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHcc--chHHHHHHHhhhhhhhHH
Q 038741 329 VFYVIESWTST-RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALP--FFNEVLGLLGALAYWPLT 405 (465)
Q Consensus 329 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~l~Ga~~~~~l~ 405 (465)
.-+.+...-++ ..| +++.+-++. +.+.....+...+..+..++....| .++.++++.+ .+..+.
T Consensus 306 ~sR~l~a~ardg~lP--~~f~kv~~~---------~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~ 372 (456)
T PRK10238 306 NSRMLFGLAQQGNAP--KALASVDKR---------GVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV--SALVIN 372 (456)
T ss_pred HHHHHHHHHhCCCcc--HHHHhhCcC---------CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHH
Confidence 33333333221 122 111111111 1223334444444333333322333 3555555544 345789
Q ss_pred HhhhHHHHHHHhc
Q 038741 406 VYFPLEMYIAQKN 418 (465)
Q Consensus 406 filP~l~~l~~~~ 418 (465)
|.+|.+.+++.+|
T Consensus 373 y~~~~~~~l~~r~ 385 (456)
T PRK10238 373 WAMISLAHMKFRR 385 (456)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 22
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.52 E-value=1.4e-10 Score=119.18 Aligned_cols=247 Identities=9% Similarity=0.069 Sum_probs=146.5
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLAW-GIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKT 96 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~ 96 (465)
+.+|+.+.++.....+++++|+|++..|. ++++.|. ..+...++++++......-+.|.... +++..++.+.+++
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~---~~~~~~~~~ya~~ 92 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS---NLEYKSFSDFASD 92 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCcHHHHHHH
Confidence 46777899999999999999999999765 7777776 45666666777666666666664321 2344467789999
Q ss_pred HcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhH
Q 038741 97 YLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSW 176 (465)
Q Consensus 97 ~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 176 (465)
.+|+..++++.+..++.......+.....+.++..+.+. .....+.++. ++++-+.-.+..+..+.
T Consensus 93 ~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~~~~~~~~~-~~~~~~iN~~g~~~~~~ 158 (469)
T PRK11049 93 LLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------------LSDWVASLAV-VLLLLSLNLATVKMFGE 158 (469)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHH-HHHHHHHHHHhHHHHHH
Confidence 999999999999999876555555555555555433210 1111111111 11122222233444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcc--CCCCc--cccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhh
Q 038741 177 LSIIAAIMSVSYAGIGMGLAFTKAVLG--HGETT--SLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTL 252 (465)
Q Consensus 177 ~s~~~~~~~~~~~~i~~~~~i~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 252 (465)
+........+...+..++..+.....+ .+... .... .++.....+..+.++..++....|+|.+.+.+...-+|+
T Consensus 159 i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 237 (469)
T PRK11049 159 MEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAH-LWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccc-cCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence 444433333221112121212111110 00000 0000 000000001223458889999999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 038741 253 KSSPPENKVMKKANVIATLTATTLYMLCGCFGYA 286 (465)
Q Consensus 253 ~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~ 286 (465)
||| +|+.+|++..+.....++|.........
T Consensus 238 knP---~r~iPrai~~~~~~~~~~y~l~~~~~~~ 268 (469)
T PRK11049 238 KDP---EKSLPRAINSIPIRIIMFYVFALIVIMS 268 (469)
T ss_pred cCH---hhHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 999 4789999987777788888876665443
No 23
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.51 E-value=1.3e-10 Score=119.17 Aligned_cols=248 Identities=10% Similarity=0.025 Sum_probs=151.8
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHH-HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLA-WGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKT 96 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~ 96 (465)
+.+|+-+.++..+..+++++|+|++.+| .+.++.|. .+++..++.+++.......+.|..... ++.-+..+.+++
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~---P~~Gg~~~~~~~ 84 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVAN---PDTGSFSTYADD 84 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHH
Confidence 3567778999999999999999999999 66778885 466677777777777777777753321 234466778999
Q ss_pred HcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHH-HHHHhcCCCcCchh
Q 038741 97 YLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIV-EMFLSQIPNIHKLS 175 (465)
Q Consensus 97 ~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i-~~pl~~~~~l~~l~ 175 (465)
.+|++.++++.+..++.....+.+.....++++..+.+. . +.+.....++ +.-+.-.+..+..+
T Consensus 85 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~~~~~~~~~~~~n~~gv~~~~ 149 (452)
T TIGR01773 85 AIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------I--PLWLFSLILTIVLTLTNLYSVKSYG 149 (452)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C--cHHHHHHHHHHHHHHHHHHhcchhh
Confidence 999999999999988877777766666666666543211 0 1222222221 12222233445555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCC-CcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcC
Q 038741 176 WLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGP-NLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKS 254 (465)
Q Consensus 176 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 254 (465)
.+.....+..+...+..++..+.......+......-.++.. .......+.++..++....|+|.+.+....+.+|+||
T Consensus 150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~ 229 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSN 229 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcC
Confidence 444443333222111111111111111111100000000000 0000122336888999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 038741 255 SPPENKVMKKANVIATLTATTLYMLCGCFGYAA 287 (465)
Q Consensus 255 ~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~ 287 (465)
| +|+.+|++..+.....++|+.........
T Consensus 230 P---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 230 P---IKSITRATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHHHHeeE
Confidence 9 47899999888888888998865544433
No 24
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.51 E-value=7.3e-11 Score=121.40 Aligned_cols=365 Identities=13% Similarity=0.050 Sum_probs=194.5
Q ss_pred ccccHHHHHHHHHhhhhhhhhhhHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-cHHHHHHHHc
Q 038741 21 RTGTVWTASAHIVTAIVGSGVLSLAWGIA-QLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNH-TYRAAVKTYL 98 (465)
Q Consensus 21 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~-sy~~l~~~~~ 98 (465)
|+.+.++.+...+++++|+|++.+|.... .+|....++..++.++..........|..... ++.. ..-+.+++.+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~---P~~gGG~y~y~~~~f 77 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKK---PELDGGVYSYAKAGF 77 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCCCCChhhhHHhHc
Confidence 45678999999999999999999998766 44533344455666666666666666643221 2221 3445588999
Q ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHH---HHHHHhcCCCcCchh
Q 038741 99 GGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGI---VEMFLSQIPNIHKLS 175 (465)
Q Consensus 99 G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~---i~~pl~~~~~l~~l~ 175 (465)
|+..++++.+..++.......++.....+.+....+.+ . ...+.+..+.+. ..+-....+..|..+
T Consensus 78 G~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~-----~------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~ 146 (468)
T TIGR03810 78 GPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIF-----G------GGNNPPSIIGASVLLWCVHFLVLRGVEGAA 146 (468)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----c------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999888766666666665555554432210 0 011111111111 112222235555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCC
Q 038741 176 WLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSS 255 (465)
Q Consensus 176 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~ 255 (465)
.+.....+..+...++.+...+.. ...+.......+ +............++..++....|+|.+.+....+.+|.|++
T Consensus 147 ~i~~i~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~ 224 (468)
T TIGR03810 147 FINTITTIAKLVPLFVFIVIGIFA-FKGDTFTNDFWG-NANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR 224 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcHhhcCccccc-cccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc
Confidence 555555443332212212111211 111110000000 000000011122345678889999999999999999999986
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC----CCc----cccCccCchHHHHHHHHHHHHHHHHhhhhccc
Q 038741 256 PPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHA----PGN----LLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQ 327 (465)
Q Consensus 256 ~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~----~~~----il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~ 327 (465)
|+.+|++..+...+.++|....+..+...+++. ++. +.++.. ..+...+..+...++.+.+..-...
T Consensus 225 ----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~ 299 (468)
T TIGR03810 225 ----SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTL 299 (468)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998877665444321 111 111211 1234445566666666666544333
Q ss_pred cHHHHHHHHhhc-cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHH-ccchHHHHHHHhhhhhhhHH
Q 038741 328 PVFYVIESWTST-RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMA-LPFFNEVLGLLGALAYWPLT 405 (465)
Q Consensus 328 p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~-vp~~~~i~~l~Ga~~~~~l~ 405 (465)
..-+.....-++ ..|+ ++.+.++.+.| ...+.+...+..+..++... -+.++.+.++.+. ...+.
T Consensus 300 ~~sR~~~a~ardg~lP~--~f~k~~~~~tP---------~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~ 366 (468)
T TIGR03810 300 LPAEIPLLMAKDKLMPK--YFGKENANGAP---------TNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVP 366 (468)
T ss_pred HHHHHHHHHHhCCCccH--HHHhhCCCCCC---------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHH
Confidence 333333322211 1221 11111111112 33333333333222222211 1345556565443 35788
Q ss_pred HhhhHHHHHHHhcc
Q 038741 406 VYFPLEMYIAQKNI 419 (465)
Q Consensus 406 filP~l~~l~~~~~ 419 (465)
|+++++.+++.+++
T Consensus 367 y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 367 YLWSAAYQVKLSWR 380 (468)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998888644
No 25
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.49 E-value=1.4e-10 Score=119.42 Aligned_cols=248 Identities=12% Similarity=0.048 Sum_probs=149.3
Q ss_pred cccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc-cccHHHHHHHH
Q 038741 20 KRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWI-TGVSTLLIFSSISLYSSGLLADCYRAPLSGNR-NHTYRAAVKTY 97 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~-~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~-~~sy~~l~~~~ 97 (465)
+|+.|.+++....+++++|+|++.+|....+.|-. ..++..++.++..........|..... ++ .-..-+..++.
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~---P~~sGG~y~y~~~~ 82 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKK---PELDGGIYAYAREG 82 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCCCCChhhhHHhH
Confidence 56789999999999999999999999998765532 234445556666666666666643221 23 23344567899
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHH-HHHHHhcCCCcCchhH
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGI-VEMFLSQIPNIHKLSW 176 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~-i~~pl~~~~~l~~l~~ 176 (465)
+||+.+++..+..++.......++.....+++..+.+.. ..+. .+ ..+.....+ +.+-..-.+..+..+.
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-----~~~~--~~--~~~~~~~~~~~~~~~ln~~Gi~~~~~ 153 (473)
T TIGR00905 83 FGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF-----GSGN--PV--PSILGASVLLWVFTFLVLRGVRQAAF 153 (473)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCC--cH--HHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999999999887666666666666666666554421 0000 00 111111111 1222234445566555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCC
Q 038741 177 LSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSP 256 (465)
Q Consensus 177 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~ 256 (465)
+..+.....+...++.+...+.. ...+.......+ +. ..........+..++....|+|.+-+....+.+|+||+
T Consensus 154 i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~-~~--~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~- 228 (473)
T TIGR00905 154 INTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWG-HD--VPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK- 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCc-cC--CCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc-
Confidence 55555544332222222222211 111100000000 00 00111223467778889999999999999999999985
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 038741 257 PENKVMKKANVIATLTATTLYMLCGCFGYAA 287 (465)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~ 287 (465)
|+.+|++..+..++.++|+.........
T Consensus 229 ---r~iPrai~~~~~i~~~~Yil~~~~~~~~ 256 (473)
T TIGR00905 229 ---SDVGKATVLGTLGALVIYILITLLSLGV 256 (473)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999887664443
No 26
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.49 E-value=4.1e-10 Score=115.56 Aligned_cols=246 Identities=11% Similarity=0.051 Sum_probs=144.7
Q ss_pred CCccccccHHHHHHHHHhhhhhhhhhhHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHH
Q 038741 17 GRSKRTGTVWTASAHIVTAIVGSGVLSLAWGI-AQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVK 95 (465)
Q Consensus 17 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~ 95 (465)
++.+|+.+.++.....+++++|+|++.+|... +.+|. .+++..++.+++......-+.|..... ++.-+..+.++
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~---P~~Gg~y~y~~ 80 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHN---PAASSFSRYAQ 80 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHH
Confidence 34567778999999999999999999988664 45565 467777777777777777777754321 23345566789
Q ss_pred HHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchh
Q 038741 96 TYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLS 175 (465)
Q Consensus 96 ~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 175 (465)
+.+|+..++++.+..++.....+.......+.++....+ ..+...+.+...+ ++-....+..|...
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-l~~~ln~~gv~~~~ 146 (457)
T PRK10580 81 ENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP-------------TVPHWIWVLSVVL-IICAVNLMSVKVFG 146 (457)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCChHHHHHHHHH-HHHHHHHccchhHH
Confidence 999999999999988776655555544444444443221 0111112222111 22222334445555
Q ss_pred HHHHHHHHHHHHHHHHhhhhh--hh-hhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhh
Q 038741 176 WLSIIAAIMSVSYAGIGMGLA--FT-KAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTL 252 (465)
Q Consensus 176 ~~s~~~~~~~~~~~~i~~~~~--i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 252 (465)
.+.....+..+...++.+... +. ....+......... .++.+......+.++..++....|+|.+.+......+|+
T Consensus 147 ~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 147 ELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHN-LWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccc-cCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 544433332222111111111 11 11111100000000 010000111123367788899999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 038741 253 KSSPPENKVMKKANVIATLTATTLYMLCGCFG 284 (465)
Q Consensus 253 ~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~g 284 (465)
||| +|+.+|++..+.....++|.......
T Consensus 226 knP---~k~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 226 KDP---EKSIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred cCh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 47799999888888888887775544
No 27
>PRK10746 putative transport protein YifK; Provisional
Probab=99.48 E-value=3.5e-10 Score=115.92 Aligned_cols=367 Identities=8% Similarity=0.018 Sum_probs=197.5
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLAW-GIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKT 96 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~ 96 (465)
+.+|+-+.++..+..+++++|+|++..|. +.+.+|. ..++..++.+++......-+.|..... ++.-++.+.+++
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~---P~sGg~~~y~~~ 82 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLE---PVTGSFAVYAHR 82 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHH
Confidence 45677789999999999999999999775 4456665 355666667777777777777753321 345578888999
Q ss_pred HcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhH
Q 038741 97 YLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSW 176 (465)
Q Consensus 97 ~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 176 (465)
.+|++.++++.+..++.....+.+.....+.+++...+ ..+...+..+... .+-+.-.+..|..+.
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p-------------~~~~~~~~~~~~~-~~~~lN~~gv~~~~~ 148 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFP-------------EMAQWIPALIAVA-LVALANLAAVRLYGE 148 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-------------CCchHHHHHHHHH-HHHHHHHHhHHHHHH
Confidence 99999999999999888776666666666666554321 1111112122111 111122233343333
Q ss_pred HHHHHHHHHHHHHHHhhhhhh--h-hhhccCCCCccccccccCCCc-ccccchhhHHHHHHHHHHHhccchhHHHHHHhh
Q 038741 177 LSIIAAIMSVSYAGIGMGLAF--T-KAVLGHGETTSLTGEEIGPNL-TAADKTWGMFSAIGNIAFACAYLQILIEIQDTL 252 (465)
Q Consensus 177 ~s~~~~~~~~~~~~i~~~~~i--~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 252 (465)
+........+...+..+...+ . ....+++...... ++..+. .....+.++..++....|+|.+.+.+....+|+
T Consensus 149 ~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~ 226 (461)
T PRK10746 149 IEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFS--NLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA 226 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc--cccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 332222211111111111111 1 1111110000000 110000 011224467789999999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCC----cc---ccCccCchHHHHHHHHHHHHHHHHhhhhc
Q 038741 253 KSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPG----NL---LAGFYKPFWLVDMANSFIVVHLLGAYQVM 325 (465)
Q Consensus 253 ~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~----~i---l~~~~~~~~~~~~~~~~~~~~~~~s~pl~ 325 (465)
||| +|+.+|++..+.....++|+...+........+..+ .. .++. .......+.+....+..+.+..-.
T Consensus 227 knP---~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~-g~~~~~~i~~~~il~a~~s~~n~~ 302 (461)
T PRK10746 227 KNP---QVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKI-GITAAAGIINFVVLTAALSGCNSG 302 (461)
T ss_pred cCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHh-CchhHHHHHHHHHHHHHHHHHHHH
Confidence 999 488999999888888888888655544444333211 10 0111 111222344444445555544433
Q ss_pred cccHHHHHHHHhhc-cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhh--hh
Q 038741 326 AQPVFYVIESWTST-RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALA--YW 402 (465)
Q Consensus 326 ~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~--~~ 402 (465)
+...-+.+...-++ ..|+ ++.+.+.. +.+.....+......+...+....|+-+.+++.+-+.+ ..
T Consensus 303 ~~~~sR~l~~~a~~g~lP~--~~~~~~~~---------g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~ 371 (461)
T PRK10746 303 MYSCGRMLYALAKNRQLPA--AMAKVSRH---------GVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPG 371 (461)
T ss_pred HHHHHHHHHHHHhCCCcCH--HHHHhCCC---------CCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 33333333333221 1121 11111111 11233333333333334445555665555555444332 35
Q ss_pred hHHHhhhHHHHHHHhcc
Q 038741 403 PLTVYFPLEMYIAQKNI 419 (465)
Q Consensus 403 ~l~filP~l~~l~~~~~ 419 (465)
.+.++++++.+++.+|+
T Consensus 372 ~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 372 MVPWFVILISQLRFRRA 388 (461)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78899999999998743
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.48 E-value=3.2e-10 Score=116.72 Aligned_cols=251 Identities=11% Similarity=0.003 Sum_probs=142.9
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhhHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 19 SKRTGTVWTASAHIVTAIVGSGVLSLAWGI-AQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 19 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
.+|+.+.++.....++.++|+|++..|-.. +..|-...++..++.+++......-+.|..... ++.-.+-+.+++.
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~---P~aGG~y~y~~~~ 88 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAM---PETGAFHVYAARY 88 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHh
Confidence 467778999999999999999999877654 566754456666777777777777777743321 2334566788899
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHH
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWL 177 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 177 (465)
+|+..++++.+..++.....+.......+..+..+.+ ..+...+.++..++ +-+...+..|..+..
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~~~~~~-~~~in~~gvk~~~~~ 154 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-------------QVPVWPWCLLFCAL-IFGLNVVSTRFFAEG 154 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cCcHHHHHHHHHHH-HHHHHHHhHHHHHHH
Confidence 9999999999888876655544444333333322110 00101111112111 122223334444433
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccCCC-Cc-ccccc-ccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcC
Q 038741 178 SIIAAIMSVSYAGIGMGLAFTKAVLGHGE-TT-SLTGE-EIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKS 254 (465)
Q Consensus 178 s~~~~~~~~~~~~i~~~~~i~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 254 (465)
+.......+...+..+...+.......+. +. ..+.. ++..+........++..++....|+|.+-+.+...-+|+||
T Consensus 155 ~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~kn 234 (471)
T PRK11387 155 EFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETEN 234 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 32222222211111111111111100000 00 00000 00000000112345777888899999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 038741 255 SPPENKVMKKANVIATLTATTLYMLCGCFGYAALG 289 (465)
Q Consensus 255 ~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG 289 (465)
| +|+.+|++..+..++.++|+...+......+
T Consensus 235 P---~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 235 P---AKVIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 9 4789999999999999999988765444433
No 29
>PRK11021 putative transporter; Provisional
Probab=99.48 E-value=2.9e-10 Score=115.06 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=136.6
Q ss_pred cHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCce
Q 038741 24 TVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKH 103 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~ 103 (465)
+.+++....+++++|+|++.+|-...+.+-..++...++.++..........|..... ++.-.....+++.+|++.+
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~---P~aGG~y~y~~~~~G~~~g 78 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHF---PHAGGPAHFVGMAFGPRLG 78 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCHHHhHHHHhCchhH
Confidence 5789999999999999999999766644323456666667777666677777653322 2334556678889999999
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHHHHHHH
Q 038741 104 KICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAI 183 (465)
Q Consensus 104 ~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 183 (465)
++..+..+........+......+++..+.+. . .+. .....+...+.+-+.-.+..|..+.+.....+
T Consensus 79 f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~ 146 (410)
T PRK11021 79 RVTGWLFLSVIPVGLPAALQIAAGFGQALFGW-----S------SWQ-LLLAELLTLALLWLLNLRGASSSANLQTVIAL 146 (410)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-----C------Cch-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99998887644433333433444444433210 0 110 11111111112222233444444444433222
Q ss_pred HHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCCchhhHHH
Q 038741 184 MSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMK 263 (465)
Q Consensus 184 ~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~~~ 263 (465)
..+ .++....... ..+..+ . ++. .....++.++..++....|+|.+.+.+...-+|+||| +|+++
T Consensus 147 ~~~----~i~~~~~~~~-~~~~~~--~---~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k~iP 211 (410)
T PRK11021 147 LIV----ALVVAIWWAG-DIKPAD--I---PFP--APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNP---ERDFP 211 (410)
T ss_pred HHH----HHHHHHHHHc-CCchhc--C---CCC--CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCc---ccccc
Confidence 111 1111111111 101000 0 010 0112234567889999999999999999999999998 37899
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 038741 264 KANVIATLTATTLYMLCGCF 283 (465)
Q Consensus 264 ~~~~~a~~~~~i~Y~~~g~~ 283 (465)
|++..+..++.++|......
T Consensus 212 rAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 212 RALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765
No 30
>PRK10836 lysine transporter; Provisional
Probab=99.47 E-value=6.8e-10 Score=114.81 Aligned_cols=250 Identities=9% Similarity=0.027 Sum_probs=139.4
Q ss_pred CCCccccccHHHHHHHHHhhhhhhhhhhHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHH
Q 038741 16 DGRSKRTGTVWTASAHIVTAIVGSGVLSLAW-GIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAV 94 (465)
Q Consensus 16 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~ 94 (465)
+++.+|+.+.++..+..+++++|+|++.+|. +.++.|....++..++.+++....+.-+.|..... ++.-...+.+
T Consensus 10 ~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~---P~sGg~y~y~ 86 (489)
T PRK10836 10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYM---PVSGSFATYG 86 (489)
T ss_pred cccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHH
Confidence 3456677899999999999999999999996 56677764467777778888877777777753322 3444666778
Q ss_pred HHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhh-HHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCc
Q 038741 95 KTYLGGRKHKICGLVQYVLLVGMVVGYTITAAIS-MLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHK 173 (465)
Q Consensus 95 ~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 173 (465)
++.+|+..++++.+..++... .+.+......+. +... .. ..+...+..+. ++++-+.-....+.
T Consensus 87 ~~~~g~~~gf~~Gw~~~~~~~-~~~a~~~~a~~~~~~~~-----~~--------~~~~~~~~~~~-~~~~~~lN~~gv~~ 151 (489)
T PRK10836 87 QNYVEEGFGFALGWNYWYNWA-VTIAVDLVAAQLVMSWW-----FP--------DTPGWIWSALF-LGVIFLLNYISVRG 151 (489)
T ss_pred HHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhc-----CC--------CCchHHHHHHH-HHHHHHHHHHcchh
Confidence 888999988888887775432 222222222222 1111 10 00101111111 11111222223333
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhh--hhhccCCCCccccccccCCCccc-ccchhhHHHHHHHHHHHhccchhHHHHHH
Q 038741 174 LSWLSIIAAIMSVSYAGIGMGLAFT--KAVLGHGETTSLTGEEIGPNLTA-ADKTWGMFSAIGNIAFACAYLQILIEIQD 250 (465)
Q Consensus 174 l~~~s~~~~~~~~~~~~i~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 250 (465)
.+.......+..+...+..+...+. .....++.+.... ++..+..+ ...+..+........|+|.+.+.+...-+
T Consensus 152 ~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~ 229 (489)
T PRK10836 152 FGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWS--NWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAG 229 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccc--cCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3333222222111111111111111 1111110000000 11100011 11233455556667799999999999999
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 038741 251 TLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAAL 288 (465)
Q Consensus 251 ~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~f 288 (465)
|+||| +|+.+|++..++..+.++|+.....-....
T Consensus 230 E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 230 ESEDP---AKNIPRAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 99999 478999999999999999998866544443
No 31
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.45 E-value=4.6e-10 Score=117.33 Aligned_cols=373 Identities=15% Similarity=0.069 Sum_probs=198.7
Q ss_pred CCCccccccHHHHHHHHHhhhhhhhhhhHHHHHH--hhchHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCccccHHH
Q 038741 16 DGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIA--QLGWITGVSTLLIFSSISLYSSGLLADCY-RAPLSGNRNHTYRA 92 (465)
Q Consensus 16 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~--~~G~~~g~i~l~~~~~l~~~t~~lL~~~~-~~~~~~~~~~sy~~ 92 (465)
+++.+|+.+.++.+...++.++|+|++.+|-... ..|.. .++..++.++.+........|.. +.++.| ..+.|
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG-g~Y~y-- 98 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG-SAYLY-- 98 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cceee--
Confidence 3345788899999999999999999999986543 46754 44555666666666666666643 232222 33455
Q ss_pred HHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccC----CCCCcccccCC-chhHHHHHHHHHHhc
Q 038741 93 AVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKR----GHGAQCKFSNN-PFMIGIGIVEMFLSQ 167 (465)
Q Consensus 93 l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~----~~~~~~~~~~~-~~~~i~~~i~~pl~~ 167 (465)
+++.+|+..++++.+..++.....+.+.....++++..++........ ....+ ..... ....+..++++-+..
T Consensus 99 -~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln 176 (557)
T TIGR00906 99 -SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLL 176 (557)
T ss_pred -HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHH
Confidence 566799999999999999877776666666677777766542100000 00000 01111 111111111222233
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHH
Q 038741 168 IPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIE 247 (465)
Q Consensus 168 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~ 247 (465)
.+..|..+.+..+.....+....+.++..+.+. +..+..... ..+.+...+....+++.+.....|+|.+-+.+..
T Consensus 177 ~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~---~~~~~~~~~-~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~ 252 (557)
T TIGR00906 177 SFGVKESAWVNKIFTAINILVLLFVIIAGFTKA---DVANWSITE-EKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIAT 252 (557)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhC---Cchhccccc-cccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHH
Confidence 455666666665555444432222222222211 111111000 0000001111234678899999999999999999
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCC---CCCcc---ccCccCchHHHHHHHHHHHHHHHHh
Q 038741 248 IQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNH---APGNL---LAGFYKPFWLVDMANSFIVVHLLGA 321 (465)
Q Consensus 248 i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~---~~~~i---l~~~~~~~~~~~~~~~~~~~~~~~s 321 (465)
.-+|+||| +|+.+|++..++.+++++|..+.+.-...-+.+ .++.+ .... ...+...+..+...+.++.+
T Consensus 253 ~aeE~knP---~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~-g~~~~~~ii~~~~~~~~~~s 328 (557)
T TIGR00906 253 TGEEVKNP---QRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYV-GWGPAKYIVAVGALCGMSTS 328 (557)
T ss_pred hHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHc-CchHHHHHHHHHHHHHHHHH
Confidence 99999999 477999999999999999999876543332221 11111 1111 12344444445555555554
Q ss_pred hhhccccHHHHHHHHhhc-cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhh
Q 038741 322 YQVMAQPVFYVIESWTST-RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALA 400 (465)
Q Consensus 322 ~pl~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~ 400 (465)
....+...-+.+..+-++ ..|+ ++.+-+ |+. +.......+. .+++.+++.. .+++.+.++.. +
T Consensus 329 l~~~~~~~sRil~amarDGlLP~--~fakv~----~r~----~tP~~Ail~~---~iv~~il~~~-~~~~~l~~l~s-i- 392 (557)
T TIGR00906 329 LLGGMFPLPRVIYAMARDGLLFK--WLAQIN----SKT----KTPINATVVS---GAIAALMAFL-FDLKALVDLLS-I- 392 (557)
T ss_pred HHHHHHHHHHHHHHHHcCCCccH--HHhccC----CCC----CCcHHHHHHH---HHHHHHHHHH-cCHHHHHHHHH-H-
Confidence 443333333333333221 1221 111111 110 1112222222 2222333333 35666666554 2
Q ss_pred hhhHHHhhhHHHHHHHhc
Q 038741 401 YWPLTVYFPLEMYIAQKN 418 (465)
Q Consensus 401 ~~~l~filP~l~~l~~~~ 418 (465)
+..+.|.++++..+.+++
T Consensus 393 g~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 393 GTLLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 357889999888877763
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.44 E-value=6.3e-10 Score=121.84 Aligned_cols=254 Identities=13% Similarity=0.067 Sum_probs=153.8
Q ss_pred ccccccHHHHHHHH-Hhhhhhhhhhh-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHH
Q 038741 19 SKRTGTVWTASAHI-VTAIVGSGVLS-LAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKT 96 (465)
Q Consensus 19 ~~~~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~ 96 (465)
+.++-++++.++.- +.+++|+|++- +++...++|...+++..+++++++..+..-+.+..... .++.-.--....+
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng--~p~aGG~Y~yisr 151 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNG--VVKGGGAYYLISR 151 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCccHHHHHHHH
Confidence 34556788877777 99999999988 77888899988888889999999999888887754321 0121122334788
Q ss_pred HcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhH
Q 038741 97 YLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSW 176 (465)
Q Consensus 97 ~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 176 (465)
.+|+..+..+.++.++.....+..|.+..++++..+++..+.. ..... ..+.+.+.. ..++++-+......+..+.
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~-~~~~~--~~~~~iia~-i~l~ll~~In~~Gvk~~ak 227 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK-IMVDP--INDIRIYGT-VTVVVLLGISFAGMEWENK 227 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccCc--cccchHHHH-HHHHHHHHHHHhhHHHHHH
Confidence 8999999999999999888889999999999988876532110 00000 001111111 1111222222333343333
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccc---cCCCcc-cccchh-hHHHHHHHHHHHhccchhHHHHHHh
Q 038741 177 LSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEE---IGPNLT-AADKTW-GMFSAIGNIAFACAYLQILIEIQDT 251 (465)
Q Consensus 177 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~-~~~~~~~~~~faf~~~~~i~~i~~~ 251 (465)
+..+.++..+...+.+++..+... .+.+ .....+.+ +..+.. ...... ++...++++.+||.+......+..|
T Consensus 228 ~q~vl~vi~ll~ll~~iig~~~~~-~~~~-~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 228 AQVLFLVIVLLSILNIFVGTIIPA-FDKP-AKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHheeeecC-CCCC-ccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333322211111111111000 0000 00000000 000000 011112 2677888888899999999999999
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 038741 252 LKSSPPENKVMKKANVIATLTATTLYMLCGCF 283 (465)
Q Consensus 252 m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~ 283 (465)
+|+| +|+.+|++..++.+++++|+++.+.
T Consensus 306 lKnP---~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 306 LKDP---QKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred ccCh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 4789999999999999999999764
No 33
>TIGR00909 2A0306 amino acid transporter.
Probab=99.43 E-value=4.1e-10 Score=114.67 Aligned_cols=294 Identities=10% Similarity=-0.009 Sum_probs=173.7
Q ss_pred cccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcC
Q 038741 20 KRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLG 99 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G 99 (465)
+|+.+.++.+...+++++|+|++.+|......+-..+++..++.+++.........|..+.. ++.-..-+..++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~---p~~Gg~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAML---PVAGSPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCcceeeHHHHhC
Confidence 46778999999999999999999999765543322345555666666666666666654322 222234455778899
Q ss_pred CCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCccc---ccCCch--hHHHHHHHHHHhcCCCcCch
Q 038741 100 GRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCK---FSNNPF--MIGIGIVEMFLSQIPNIHKL 174 (465)
Q Consensus 100 ~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~---~~~~~~--~~i~~~i~~pl~~~~~l~~l 174 (465)
|+.+++..+..++.....+..+....++++..+.+.... ..+. .+. .+...+ ..+..++++-+...+..|..
T Consensus 79 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~ 155 (429)
T TIGR00909 79 ELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGL--DLPA-VLTAKPGNGGVFNLPALLIVLFLTYILYLGAKES 155 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCch-hhhcCCcccccccHHHHHHHHHHHHHHHhCcHHH
Confidence 999999999998888878888888888888777642100 0000 000 001111 11112222223344456666
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcC
Q 038741 175 SWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKS 254 (465)
Q Consensus 175 ~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 254 (465)
+.++.+.....+...++.+...+.+. +.. ++.+ ..+....++..++....|+|.+.+....+.+|+||
T Consensus 156 ~~~~~v~~~~~i~~l~~~~~~~~~~~---~~~-------~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~ 223 (429)
T TIGR00909 156 GKVNDILVVLKVAALLLFAALGAIHF---ASN-------NYTP--FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKN 223 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhC---cHH-------hcCC--CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccC
Confidence 66666665544432222121112111 100 1110 11123446788899999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC--C-Cc----cccCccCchHHHHHHHHHHHHHHHHhhhhccc
Q 038741 255 SPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHA--P-GN----LLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQ 327 (465)
Q Consensus 255 ~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~--~-~~----il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~ 327 (465)
| +|+.+|++..++.++.++|+..........+.+. + ++ +..+. ..++...+..+...++.+.+..-...
T Consensus 224 p---~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 299 (429)
T TIGR00909 224 P---ERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDL-GQGIGGLILTAGAVFSIASVMLAGIY 299 (429)
T ss_pred c---cccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 3789999999999999999998765544322221 0 11 11111 12334445566666666666654433
Q ss_pred cHHHHHHH
Q 038741 328 PVFYVIES 335 (465)
Q Consensus 328 p~~~~~~~ 335 (465)
..-+.+..
T Consensus 300 ~~sR~~~~ 307 (429)
T TIGR00909 300 GTSRVLFA 307 (429)
T ss_pred HHHHHHHH
Confidence 33333333
No 34
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.43 E-value=1.2e-09 Score=112.91 Aligned_cols=243 Identities=10% Similarity=0.024 Sum_probs=147.8
Q ss_pred ccccHHHHHHHHHhhhhhhhhhhHH-HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ccccHHHHHHHHc
Q 038741 21 RTGTVWTASAHIVTAIVGSGVLSLA-WGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGN-RNHTYRAAVKTYL 98 (465)
Q Consensus 21 ~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~-~~~sy~~l~~~~~ 98 (465)
|+.+.++.....++.++|+|++..| .+.+..|....+...++.+++......-+.|..... + ..-.|.+.+++.+
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~---P~~gG~~~~~~~~~~ 78 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFY---PVVSGSFATYASRFV 78 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHHHHHHc
Confidence 5568899999999999999999865 556666644345566667777777777777754322 2 2236778899999
Q ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHH
Q 038741 99 GGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLS 178 (465)
Q Consensus 99 G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 178 (465)
|+..++++.+..++.....+.+.....+.++....+ ..+...+..+.. +++-+.-.+..|..+.+.
T Consensus 79 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~in~~gv~~~~~~~ 144 (478)
T TIGR00913 79 DPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFY-VFIVIINLFGVKGYGEAE 144 (478)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHH-HHHHHHHHhcchHHHHHH
Confidence 999999999999888777777777666666543211 011112222211 122222344455555555
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccC-C-Ccccc---cchhhHHHHHHHHHHHhccchhHHHHHHhhc
Q 038741 179 IIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIG-P-NLTAA---DKTWGMFSAIGNIAFACAYLQILIEIQDTLK 253 (465)
Q Consensus 179 ~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~-~-~~~~~---~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 253 (465)
...+...+...+..++..+.....+.+.+......++. . ...+. ....++..++....|+|.+-+....+.+|+|
T Consensus 145 ~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k 224 (478)
T TIGR00913 145 FWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAA 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhc
Confidence 44433222111111111221111111111000000000 0 01111 1245678899999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 038741 254 SSPPENKVMKKANVIATLTATTLYMLCGCF 283 (465)
Q Consensus 254 ~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~ 283 (465)
|| +|+.+|++..+..++.++|+...+.
T Consensus 225 nP---~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 225 NP---RKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred Ch---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 4789999999999999999987654
No 35
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.37 E-value=2.8e-09 Score=108.94 Aligned_cols=349 Identities=12% Similarity=0.074 Sum_probs=187.8
Q ss_pred HhhhhhhhhhhHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCceehhHHHHH
Q 038741 33 VTAIVGSGVLSLAW-GIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQY 111 (465)
Q Consensus 33 ~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~i~~~ 111 (465)
+++++|+|++-.|- +.++.|. ..++..++.+++....+....|..... ++.-...+.+++.+|++.++++.+..+
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~---P~~Gg~y~y~~~~~G~~~gf~~gw~~~ 79 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVAT---PDTGSFSTYADKAIGRWAGYTIGWLYW 79 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCHHHHHHHHcChHHHHHHHHHHH
Confidence 57899999999886 7778886 477777777887777777777753321 344467778889999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHH-HHHHHHhcCCCcCchhHHHHHHHHHHHHHHH
Q 038741 112 VLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIG-IVEMFLSQIPNIHKLSWLSIIAAIMSVSYAG 190 (465)
Q Consensus 112 ~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 190 (465)
+.....+.......+..+....+ .. ..+..... ++.+-+.-.+..|..+.+....++..+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li 144 (446)
T PRK10197 80 WFWVLVIPLEANIAAMILHSWVP-------------GI--PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAIL 144 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-------------cC--cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHH
Confidence 77665555544444433332110 11 11211111 1112222233444444444444433332112
Q ss_pred HhhhhhhhhhhccCCCCcccccc--ccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCCchhhHHHHHHHH
Q 038741 191 IGMGLAFTKAVLGHGETTSLTGE--EIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVI 268 (465)
Q Consensus 191 i~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~~~~~~~~ 268 (465)
..+...+.. ...........+. .++.+......+.++..++....|+|.+-+.+....+|+||| +|+.+|++..
T Consensus 145 ~~ii~~~~~-~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~ 220 (446)
T PRK10197 145 AFIFLGAVA-ISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNS 220 (446)
T ss_pred HHHHHHHHH-hcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHH
Confidence 211111111 1111000000000 000000011223478899999999999999999999999999 4789999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCC--------ccccCccCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHhhc-
Q 038741 269 ATLTATTLYMLCGCFGYAALGNHAPG--------NLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPVFYVIESWTST- 339 (465)
Q Consensus 269 a~~~~~i~Y~~~g~~gy~~fG~~~~~--------~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~~~~~~~~- 339 (465)
++..+.++|+...+.....-..+..+ .+.+.. ...+...+.++...++.+.+..-.+...-+.+...-++
T Consensus 221 ~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg 299 (446)
T PRK10197 221 VIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELL-NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRG 299 (446)
T ss_pred HHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999998665533322222111 112222 11233445555555555555544444344444433221
Q ss_pred cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHcc--chHHHHHHHhhhhhhhHHHhhhHHHHHHHh
Q 038741 340 RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALP--FFNEVLGLLGALAYWPLTVYFPLEMYIAQK 417 (465)
Q Consensus 340 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~l~Ga~~~~~l~filP~l~~l~~~ 417 (465)
..|+ ++.+.+..+.| .....+......+..+.....| .++.++++.+... .+.+.++++.+++.+
T Consensus 300 ~lP~--~~~~~~~~~~P---------~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr 366 (446)
T PRK10197 300 DAPA--VMGKINRSKTP---------YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMR 366 (446)
T ss_pred CcCH--HHHhhCcCCCc---------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 1221 11111111112 3333343333333333333333 4677777766543 588888988888886
Q ss_pred c
Q 038741 418 N 418 (465)
Q Consensus 418 ~ 418 (465)
|
T Consensus 367 ~ 367 (446)
T PRK10197 367 K 367 (446)
T ss_pred H
Confidence 4
No 36
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.35 E-value=1.4e-09 Score=110.74 Aligned_cols=359 Identities=14% Similarity=0.131 Sum_probs=196.1
Q ss_pred cHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCc
Q 038741 24 TVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSIS-LYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRK 102 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~-~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~ 102 (465)
|+++.+...+++++|+|+...| ..+..|.. .+...++.+.+. ........|..+.. ++.-...+.+++.+||+.
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~---p~~GG~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAY---PSAGGIYVWVSRAFGPFW 76 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTT---TSSTTHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccC---CCcCeeeehhhhcccccc
Confidence 6789999999999999999999 77777765 444444444444 45555555543321 344566677899999999
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccC-CchhHHH---HHHHHHHhcCCCcCchhHHH
Q 038741 103 HKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSN-NPFMIGI---GIVEMFLSQIPNIHKLSWLS 178 (465)
Q Consensus 103 ~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~---~~i~~pl~~~~~l~~l~~~s 178 (465)
+++..+...+.......++.....+++...+.. .+.. ++...+. .++..-....+..|..+.+.
T Consensus 77 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~ 144 (426)
T PF13520_consen 77 GFIVGWLYWVAYILSLASVASSFASYLLSLFGP------------DLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQ 144 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG------------GGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhcccceeEEEeeccccccccchhhhhhhcccc------------ccccccchheeeeecccccceEeeechhhhhhhhh
Confidence 999999999888888877777777776544311 1111 1111111 11222233344455556555
Q ss_pred HHHHHHHH-HHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCCc
Q 038741 179 IIAAIMSV-SYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPP 257 (465)
Q Consensus 179 ~~~~~~~~-~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~ 257 (465)
.......+ ...++.+...+.....+. ... +..+.+ ...+. ....+..+++...|+|.+.+....+.+|+|+
T Consensus 145 ~~~~~~~i~~~l~~~i~~~~~~~~~~~-~~~--~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--- 216 (426)
T PF13520_consen 145 NILTVIKIVIPLLVLIILGIVSFSFSG-FNS--LSFSLS-TFFPS-GWPGFLAGFSVAFFAFSGFEAIASLAEENKN--- 216 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCH-HH------SHS-CSSCS-SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS---
T ss_pred hhhhhhhhhhhhhhheeEEEeeecccc-ccc--cccccc-ccCCc-cccchhhHHHHHHhhcccccccccccccccc---
Confidence 55554444 221222222222211111 000 000000 01111 1123678899999999999999999999775
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC---CCccc---c---CccCchHHHHHHHHHHHHHHHHhhhhcccc
Q 038741 258 ENKVMKKANVIATLTATTLYMLCGCFGYAALGNHA---PGNLL---A---GFYKPFWLVDMANSFIVVHLLGAYQVMAQP 328 (465)
Q Consensus 258 ~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~---~~~il---~---~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p 328 (465)
|+.+|++..+..++.++|...........+++. .++.. . +....++...+..+...+..+.+....+..
T Consensus 217 --k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 294 (426)
T PF13520_consen 217 --KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFG 294 (426)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcc
Confidence 789999999999999999999777666665542 12211 1 111112444555566666666666555444
Q ss_pred HHHHHHHHhhc-cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHcc--chHHHHHHHhhhhhhhHH
Q 038741 329 VFYVIESWTST-RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALP--FFNEVLGLLGALAYWPLT 405 (465)
Q Consensus 329 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~l~Ga~~~~~l~ 405 (465)
.-+.+..+-++ ..| +.+.+.+..+.| .....+...+.....++-...| ++..+.++.. + ...+.
T Consensus 295 ~sR~l~~~a~d~~lP--~~~~~~~k~~~P---------~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~-~-~~~~~ 361 (426)
T PF13520_consen 295 ASRLLYAMARDGVLP--KWFAKVNKFGTP---------YNAIILVAVISSILLLLFLFIPQSSFDILVSLSS-V-GYLIS 361 (426)
T ss_dssp HHHHHHHHHHTTSSS--GGGGTTSSSSSC---------HHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHH-H-HTHHH
T ss_pred hhhcccccccccchh--hhhhhccccCCc---------eeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHH-H-HHHHH
Confidence 44445544432 233 111221111122 2222222222212212212233 4555555443 2 35777
Q ss_pred HhhhHHHHHHHhccCCC
Q 038741 406 VYFPLEMYIAQKNIKRG 422 (465)
Q Consensus 406 filP~l~~l~~~~~~~~ 422 (465)
++++.+.+++.+++++.
T Consensus 362 ~~~~~~~~~~~~~~~~~ 378 (426)
T PF13520_consen 362 YILVILAVLFLRRKRPD 378 (426)
T ss_dssp HHHHHHHHHHTHHHSCS
T ss_pred HHHHHHHHHHHhhhcCC
Confidence 77888777777644433
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.35 E-value=3.6e-09 Score=108.16 Aligned_cols=240 Identities=13% Similarity=0.060 Sum_probs=142.6
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCccccHHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCY-RAPLSGNRNHTYRAAVKT 96 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~-~~~~~~~~~~sy~~l~~~ 96 (465)
+.+|+-|.++.....++.++|......+.+++..|+..-+...++.+++....+..+.|.. +.+ +.-..-..+++
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P----~~Gg~y~~~~~ 79 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIP----TAGGGYGFARR 79 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCCCHHHHHHH
Confidence 3567778999999999999984445568888889986545555555555555555566643 232 33355567789
Q ss_pred HcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhH
Q 038741 97 YLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSW 176 (465)
Q Consensus 97 ~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 176 (465)
.+|+..++++.+..++.......++....++++..+.+. .+ .+...+...+++-+.-.+..|..+.
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~-~~~~~~~~~~~~~~ln~~g~~~~~~ 145 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GP-GWLAALVFYIVFIGINILGVGEAAK 145 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------Cc-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998877777778888888887765431 00 1111111111111222233444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCCcccccccc-CCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCC
Q 038741 177 LSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEI-GPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSS 255 (465)
Q Consensus 177 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~ 255 (465)
+.....+..+.. +.+.... ...+ .........++ +.+........++..++....|+|.+.+.....-+|+|||
T Consensus 146 i~~~~~~~~~~~--l~i~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P 220 (442)
T TIGR00908 146 LEFVVTAVAIIA--LGVFIGA--MVPH-FDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNP 220 (442)
T ss_pred HHHHHHHHHHHH--HHHHHHH--Hhcc-CCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 443333222211 1111111 0000 00000000000 0000111223467788888999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhh
Q 038741 256 PPENKVMKKANVIATLTATTLYMLCGCF 283 (465)
Q Consensus 256 ~~~~~~~~~~~~~a~~~~~i~Y~~~g~~ 283 (465)
+|+.+|++..+..++.++|...-+.
T Consensus 221 ---~r~iprai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 221 ---KRDIPRGLIGAILTLLALAAGILVV 245 (442)
T ss_pred ---ccccCHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999998888876543
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.35 E-value=1e-09 Score=109.10 Aligned_cols=239 Identities=15% Similarity=0.110 Sum_probs=152.1
Q ss_pred cccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCC
Q 038741 22 TGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGR 101 (465)
Q Consensus 22 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~ 101 (465)
+.|.+|..+.++++++|+|++.+|...++.+-..+.+..++.+.+.......+.+..++. ++ .+..|..++.+||+
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~---p~-~~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF---PE-KNFSEILSKYLGKI 77 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC---CC-CCHHHHHHHHhhHH
Confidence 467899999999999999999999987765544566667777777777777777765432 33 37999999999999
Q ss_pred ceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHHHHH
Q 038741 102 KHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIA 181 (465)
Q Consensus 102 ~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 181 (465)
.++++.+....+....+.......++.++... .+ ..+ .+...+..++..-....+.++....++.+-
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~--------~tp-~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~ 144 (359)
T TIGR00912 78 LGRLLSILFILYFFLIAAYLIRIFADFIKTYL----LP--------RTP-IIVIIILIIIVSIYIVRKGIEVLLRTAEIL 144 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC--------CCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99998888777666665555555555544321 10 000 112222222222223445666666666555
Q ss_pred HHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHH-HHHHHHhccchhHHHHHHhhcCCCchhh
Q 038741 182 AIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAI-GNIAFACAYLQILIEIQDTLKSSPPENK 260 (465)
Q Consensus 182 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~i~~i~~~m~~~~~~~~ 260 (465)
....+.. .+...........+.+ ...+ .......+...+. ....++|.+.........++++| |
T Consensus 145 ~~~~i~~---~~~il~~~~~~~~~~~-~l~P-------~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~ 209 (359)
T TIGR00912 145 LIIFLIL---FILVLILLAPKLGNIK-NLLP-------VLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK----K 209 (359)
T ss_pred HHHHHHH---HHHHHHHHhcccccHH-HccC-------ccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----h
Confidence 4433321 0011111111111000 0010 1111223444443 37788999989989999999987 8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC
Q 038741 261 VMKKANVIATLTATTLYMLCGCFGYAALGNHA 292 (465)
Q Consensus 261 ~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~ 292 (465)
|.+|+...+..++.++|...-+.....+|.+.
T Consensus 210 ~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 210 KIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 99999999999999999999888888888763
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.34 E-value=1.4e-09 Score=111.29 Aligned_cols=244 Identities=15% Similarity=0.136 Sum_probs=140.0
Q ss_pred CCccccccHHHHHHHHHhhhhhhhhhhHHHHH-HhhchH-HHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccHHHH
Q 038741 17 GRSKRTGTVWTASAHIVTAIVGSGVLSLAWGI-AQLGWI-TGVSTLLIFSSISLYSSGLLADCYR-APLSGNRNHTYRAA 93 (465)
Q Consensus 17 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~-~g~i~l~~~~~l~~~t~~lL~~~~~-~~~~~~~~~sy~~l 93 (465)
++.+|+.+.++.....++.++|+|++..|... +..|-. ..+...++.+.+.........|... .++++ ..+.|
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G-G~y~y--- 79 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG-ADYVY--- 79 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-Cceee---
Confidence 34577789999999999999999999988764 445632 3444556666666666666666432 22332 34455
Q ss_pred HHHHcCCCceehhHHHHHH-HHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcC
Q 038741 94 VKTYLGGRKHKICGLVQYV-LLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIH 172 (465)
Q Consensus 94 ~~~~~G~~~~~~~~i~~~~-~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~ 172 (465)
.++.+|+..+++..+..+. ........+....++++....+ . . ... .....+..++.+-..-.+..|
T Consensus 80 ~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-----~----~--~~~-~~~~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 80 LKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP-----I----D--PLL-GKFIAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----C----c--hHH-HHHHHHHHHHHHHHHHHhhhh
Confidence 5678999988888886543 2333344455555565543211 0 0 000 001111111112222334455
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhh
Q 038741 173 KLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTL 252 (465)
Q Consensus 173 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 252 (465)
..+.+.....+..+...+++++..+.. ...++.+...+. ......+..++..++....|+|.+-+....+.+|+
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~-~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~ 221 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFW-FKAENFAAPTTT-----AIGATGSFMALLAGISATSWSYTGMASICYMTGEI 221 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccccCCCcc-----cccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh
Confidence 555554444443332111111111211 111111000000 00111223467788899999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 038741 253 KSSPPENKVMKKANVIATLTATTLYMLCGCFGY 285 (465)
Q Consensus 253 ~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy 285 (465)
||| +|+.+|++..++.++.++|+.......
T Consensus 222 k~P---~r~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 222 KNP---GKTMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred cCc---cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 478999999999999999998766443
No 40
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.31 E-value=4.7e-09 Score=109.03 Aligned_cols=249 Identities=13% Similarity=0.086 Sum_probs=140.7
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHHHHH-HhhchHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLAWGI-AQLGWIT-GVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVK 95 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~~-g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~ 95 (465)
+.+|+-+.++.+...+++++|+|++..|... +..|-.. ..+..++.+++.........|..... ++.-..-...+
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~---P~sGG~y~~~~ 115 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTI---PKSGGEYNYIL 115 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCchhhhHH
Confidence 4577789999999999999999999988654 4556431 22334455566666666666643321 23334455567
Q ss_pred HHcCCCceehhHHHHHHH-HHHHHHHHHHHHHhhHHH-HHhhcccccCCCCCcccccCCchhHHH-H-HHHHHHhcCCCc
Q 038741 96 TYLGGRKHKICGLVQYVL-LVGMVVGYTITAAISMLT-IRKSNCFQKRGHGAQCKFSNNPFMIGI-G-IVEMFLSQIPNI 171 (465)
Q Consensus 96 ~~~G~~~~~~~~i~~~~~-~~g~~i~y~i~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~-~-~i~~pl~~~~~l 171 (465)
+.+|+..+++..+..+.. ..+.+..+....++++.. +.+. . ..+.....++. + ++++-+.-.+..
T Consensus 116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----~------~~~~~~~~~i~~~~i~~~~~ln~~Gv 184 (501)
T TIGR00911 116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD-----C------EVPEWAIRLVAVLCVLLLTLVNCLSV 184 (501)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----C------CCchHHHHHHHHHHHHHHHHHHHhhh
Confidence 789999888887765432 223344444555555322 2110 0 01111111111 1 112222233445
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHh
Q 038741 172 HKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDT 251 (465)
Q Consensus 172 ~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 251 (465)
|....+........+...++.++..+.....++..+.+... .+. ....+..++..++....|+|.+-+....+.+|
T Consensus 185 k~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~-~f~---~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E 260 (501)
T TIGR00911 185 KWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKN-AFE---GTETSAGGIVLAFYSGIWAYGGWNYLNFVTEE 260 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCccc-ccC---CCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence 55555555544443322222222222221111111100000 000 11123456778899999999999999999999
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 038741 252 LKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAA 287 (465)
Q Consensus 252 m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~ 287 (465)
+||| +|+.+|++..+..++.++|++..+.-...
T Consensus 261 ~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~ 293 (501)
T TIGR00911 261 VKNP---YRTLPIAIIISMPIVTFIYVLTNIAYFTV 293 (501)
T ss_pred hcCc---hhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 47899999999999999999986554433
No 41
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.25 E-value=2.1e-09 Score=106.70 Aligned_cols=367 Identities=12% Similarity=0.109 Sum_probs=212.2
Q ss_pred CCCCccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCccccHH
Q 038741 15 DDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLG--WITGVSTLLIFSSISLYSSGLLADCYRAP-LSGNRNHTYR 91 (465)
Q Consensus 15 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G--~~~g~i~l~~~~~l~~~t~~lL~~~~~~~-~~~~~~~sy~ 91 (465)
++.+.+|+.+.+..+..++++++|+|++.-|....+.+ ...++++-+++++++..++..-.|.-..- ++| ..+.|
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG-gd~ay- 83 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG-GDYAY- 83 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-cchhh-
Confidence 34456788899999999999999999999998887544 35566666777888888777666642221 333 22233
Q ss_pred HHHHHHcCCCceehhHHHHHHHHHHHH-HHHHHHHHhh-HHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCC
Q 038741 92 AAVKTYLGGRKHKICGLVQYVLLVGMV-VGYTITAAIS-MLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIP 169 (465)
Q Consensus 92 ~l~~~~~G~~~~~~~~i~~~~~~~g~~-i~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~ 169 (465)
..++||+...+...+.-.+...... ..+.+..+++ +....+ .|..++..--.+.++.+..+. ..
T Consensus 84 --i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----------~c~~p~~~~~lla~~~l~~lt-~~ 149 (479)
T KOG1287|consen 84 --ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----------LCDVPRVASKLLAAALLVLLT-LI 149 (479)
T ss_pred --HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----------CCCCchHHHHHHHHHHHHHHH-HH
Confidence 5667988877766666555555444 6677777777 333321 144333332233333333333 34
Q ss_pred CcCchhHHHHHHHHHHH---HHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHH
Q 038741 170 NIHKLSWLSIIAAIMSV---SYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILI 246 (465)
Q Consensus 170 ~l~~l~~~s~~~~~~~~---~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~ 246 (465)
+..+.++.+.+-.+... ..+.++++..++.......++...+. . .....+..++..++-.-.|||.+....=
T Consensus 150 n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~--f---~g~~~~~g~i~lafysglfa~~GWd~lN 224 (479)
T KOG1287|consen 150 NSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE--F---EGSDTDVGNIALAFYSGLFAFSGWDYLN 224 (479)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccc--c---ccCcCchHHHHHHHHHhhhcccCchhhc
Confidence 55556655555444333 22233333333333222211111000 0 0112234457788889999999999999
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccC------cc---CchHHHHHHHHHHHHH
Q 038741 247 EIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAG------FY---KPFWLVDMANSFIVVH 317 (465)
Q Consensus 247 ~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~------~~---~~~~~~~~~~~~~~~~ 317 (465)
.+-+|+||| +|+++|++.+++.+++++|+.+-+..+..--. +.++.+ +. -..+. ....++..++
T Consensus 225 ~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~---~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS 297 (479)
T KOG1287|consen 225 YVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLSP---DEILSSDAVAVTFADRILGVFA-WAIPFSVALS 297 (479)
T ss_pred cchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecCH---HHhcccchHHHHHHHHhccchH-HHHHHHHHHH
Confidence 999999999 48899999999999999999987765554322 222221 10 11222 4555666666
Q ss_pred HHHhhhhccccHHHHHHHHh-hccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHH
Q 038741 318 LLGAYQVMAQPVFYVIESWT-STRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLL 396 (465)
Q Consensus 318 ~~~s~pl~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~ 396 (465)
.+.+.-..++..-..+.... .++.|+. .+.-+. ++ ...+..++ ......++.....|+..+++.+
T Consensus 298 ~~G~~n~~ifs~SR~~~~~areG~LP~~--~s~i~~----~~----~TP~~all----f~~~~~i~~~~~~d~~~LIny~ 363 (479)
T KOG1287|consen 298 LIGSLNSVIFSSSRLFYAGAREGHLPAF--FSMISV----RR----FTPRPALL----FSGLLSIVLSLIGDFDQLINYV 363 (479)
T ss_pred hhhhhhhHHHHHHHHHHHHHHccCccHH--HHhhcC----CC----CCChHHHH----HHHHHHHHHHHHhhHHHHHHHH
Confidence 66666543332222222211 1222220 000000 00 01122222 3333344444556899999999
Q ss_pred hhhhhhhHHHhhhHHHHHHHhccCCCc
Q 038741 397 GALAYWPLTVYFPLEMYIAQKNIKRGT 423 (465)
Q Consensus 397 Ga~~~~~l~filP~l~~l~~~~~~~~~ 423 (465)
+=.-.....+.+=+++++|.++++..+
T Consensus 364 sf~~~l~~~l~~~gll~lR~k~p~~~r 390 (479)
T KOG1287|consen 364 SFAYWLFRGLSMAGLLWLRWKHPPLPR 390 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 877777777888899999998666443
No 42
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.24 E-value=1.1e-08 Score=100.13 Aligned_cols=361 Identities=14% Similarity=0.154 Sum_probs=213.3
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhh-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 19 SKRTGTVWTASAHIVTAIVGSGVLS-LAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 19 ~~~~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
-+|.-+.++--+.-+...+|+|.+- -..+.+.+|-- -++.-++++.+.+.-++.|.|...+ +++..|+.+.+++.
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~---~p~~gSF~~~a~~~ 86 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA---NPVSGSFSDYARKY 86 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCcHHHHHHHH
Confidence 3455567777788899999999864 66677777732 2233455666666677777775433 35677999999999
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchh--HHHHHH--HHHHhcCCCcCc
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFM--IGIGIV--EMFLSQIPNIHK 173 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~i~~~i--~~pl~~~~~l~~ 173 (465)
+|++.++++.+..++.-...+++-++..+.+++..+++ . +.|+ +....+ .+=|...|....
T Consensus 87 lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------v--P~Wv~al~~~~l~~~~NL~sVk~FGE 151 (462)
T COG1113 87 LGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------V--PQWVFALAAVVLLLAVNLISVKVFGE 151 (462)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------C--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877542 1 2233 222222 233445666666
Q ss_pred hhHH-HHHHHHHHHHHHHHhhhhh-hhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHh
Q 038741 174 LSWL-SIIAAIMSVSYAGIGMGLA-FTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDT 251 (465)
Q Consensus 174 l~~~-s~~~~~~~~~~~~i~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 251 (465)
+.++ +.+=+..++.+ ++++.. +.....++......+.. |+-.=..++...++..++-+..|||.+.+.+---..|
T Consensus 152 ~EfWfAlIKV~aIi~~--Iv~G~~ll~~g~~~~~~~~g~snl-~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E 228 (462)
T COG1113 152 LEFWFALIKVAAIIAF--IVVGIVLLFGGFGGGGGAAGFSNL-WDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE 228 (462)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHhhccCCCCCCcccccc-ccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 6644 33333333322 222221 22222222111111111 0000012334557889999999999999999999999
Q ss_pred hcCCCchhhHHHHHH-----HHHHHHHHHHHHHhhhhhhcccCCCCCCcccc--CccCchHHHHHHHHHHHHHHHHhhhh
Q 038741 252 LKSSPPENKVMKKAN-----VIATLTATTLYMLCGCFGYAALGNHAPGNLLA--GFYKPFWLVDMANSFIVVHLLGAYQV 324 (465)
Q Consensus 252 m~~~~~~~~~~~~~~-----~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~s~pl 324 (465)
-||| +|..+|++ .+...-...+..++.+..+-.++++..+-+.. .+ .-.+...+.|.-.....+.+.--
T Consensus 229 t~dP---~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~i-Gi~~Aa~i~N~VVLtAa~S~~NS 304 (462)
T COG1113 229 AKDP---EKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLI-GIPFAAGIMNFVVLTAALSALNS 304 (462)
T ss_pred hcCh---hhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHc-CCcccccceeEEEeechhhcccc
Confidence 9999 35566774 45555555666677777777777765443322 11 11122223332233333333333
Q ss_pred ccccHHHHHHHHhhc-cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHcc--chHHHHHHHhhhhh
Q 038741 325 MAQPVFYVIESWTST-RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALP--FFNEVLGLLGALAY 401 (465)
Q Consensus 325 ~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~l~Ga~~~ 401 (465)
-++..-.++..+-.+ .-|+ ...+-+.. +.....+.+..+...++.++.+..| -|+.+.+..+..
T Consensus 305 glystsRmL~~la~~g~APk--~~~klsk~---------gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~-- 371 (462)
T COG1113 305 GLYSTSRMLYSLAKQGDAPK--AFAKLSKR---------GVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG-- 371 (462)
T ss_pred cccccchHHHHHhhcCcccH--hHhhcccc---------CCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--
Confidence 333333444443221 1111 11111111 3346777888899999999999999 344444444432
Q ss_pred hhHHHhhhHHHHHHHhc
Q 038741 402 WPLTVYFPLEMYIAQKN 418 (465)
Q Consensus 402 ~~l~filP~l~~l~~~~ 418 (465)
....+.+=.+.|+|.+|
T Consensus 372 ~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 372 LLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35556677788888876
No 43
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.15 E-value=2.8e-07 Score=95.38 Aligned_cols=251 Identities=12% Similarity=-0.028 Sum_probs=127.7
Q ss_pred CccccccHHHHHHHHHhhhhh--hhhhh-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVG--SGVLS-LAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAV 94 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG--~GiL~-LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~ 94 (465)
+-+|+-+.++.+..-+. ++| .|+.. .+.+.+..|-...+...++.+++....+.-+.|..... ++.-+....+
T Consensus 9 ~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~---P~~Gg~y~~~ 84 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAY---PTSGGQYFWS 84 (482)
T ss_pred eeecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhC---CCCccHHHHH
Confidence 34566677877666666 444 56544 55566677765556667777777777777777753321 2333555666
Q ss_pred HHHcCC----CceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCch-hHHHH-H-HHHHHhc
Q 038741 95 KTYLGG----RKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPF-MIGIG-I-VEMFLSQ 167 (465)
Q Consensus 95 ~~~~G~----~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~i~~-~-i~~pl~~ 167 (465)
++.+|+ ...+++.+..++.....+.+.....++++..+... .+..... . ..++. ..+.. + +.+-+.-
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~---~-~~~~~~~~i~~~~~~~~~~in 158 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSL--TTPGREY---I-PTRWHIFGIMIGIHLIHALIN 158 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCc---c-ccCchhhhhHHHHHHHHHHHH
Confidence 777764 45666667676666666665555566665544321 1111000 0 11111 11111 1 1122222
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCccc-ccchhhHHHHHHHHHHHhccchhHH
Q 038741 168 IPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTA-ADKTWGMFSAIGNIAFACAYLQILI 246 (465)
Q Consensus 168 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~ 246 (465)
.+..|.++.......+..+...+++++..+... ..+..+.+..-.++..+... ....+.+..++....|+|.+-+...
T Consensus 159 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~ 237 (482)
T TIGR00907 159 SLPTKWLPRITSSAAYWSLLGFLTICITLLACK-SPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTA 237 (482)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccC-CCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhh
Confidence 233444444443333222211111111111111 00000000000000000000 1112345556666789999999999
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 038741 247 EIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGC 282 (465)
Q Consensus 247 ~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~ 282 (465)
.+.+|+||| +|+.+|++..+..++.+++....+
T Consensus 238 ~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~~~l 270 (482)
T TIGR00907 238 HMAEEIENP---EVVGPRAIIGAVAIGIVTGFCFNI 270 (482)
T ss_pred HHHHhcCCh---hhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999 488999999998877765544433
No 44
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.12 E-value=6e-07 Score=93.14 Aligned_cols=253 Identities=11% Similarity=0.060 Sum_probs=126.5
Q ss_pred cccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCCc-cccHHHHHHHH
Q 038741 20 KRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISL-YSSGLLADCYRAPLSGNR-NHTYRAAVKTY 97 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~-~t~~lL~~~~~~~~~~~~-~~sy~~l~~~~ 97 (465)
+|+.|.++.+...+++++|.+ .+|.+++..|.. +++..++.+.+.. -......|....- ++ .-.--...++.
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~---P~~aGG~Y~w~~~~ 79 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAF---KDEKGGIYSWMNKS 79 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCcHHHHHHHH
Confidence 456789999999999999976 568888888864 4444444444432 2334445532211 12 23445668889
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhH-HHHHhhcccccCCCCCcccccCCchhHHHHHH---HHHHhcCCCcCc
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISM-LTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIV---EMFLSQIPNIHK 173 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i---~~pl~~~~~l~~ 173 (465)
+|++.+++..+..+.................. ..+.... .....+.. ..+......+.+++ .+-....|.++.
T Consensus 80 ~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~a~~~~~~~t~vn~~g~~~ 156 (496)
T PRK15238 80 VGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKD-TTQTWHFL--GLNSTQVVGILAVIWMILVTFVASKGINK 156 (496)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-hhhhhhhh--cccchHHHHHHHHHHHHHHHHHHccchHH
Confidence 99999887665544333222111110000000 0011000 00000000 11111111122222 122234556666
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh-hhhhhhccCCCCccccccccCCCccc-ccchhhHHHHHHHHHHHhccchhHHHHHHh
Q 038741 174 LSWLSIIAAIMSVSYAGIGMGL-AFTKAVLGHGETTSLTGEEIGPNLTA-ADKTWGMFSAIGNIAFACAYLQILIEIQDT 251 (465)
Q Consensus 174 l~~~s~~~~~~~~~~~~i~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 251 (465)
.+.+..++....+...++.+.. .+......++.+.+....++..+..+ .....++..++....|+|.+.+......+|
T Consensus 157 ~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E 236 (496)
T PRK15238 157 IAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDK 236 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 6666554443322111111111 11111111111000000001000001 111235677788899999999999999999
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 038741 252 LKSSPPENKVMKKANVIATLTATTLYMLCGCFG 284 (465)
Q Consensus 252 m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~g 284 (465)
+||| +|+.+|++..+...+.++|....+..
T Consensus 237 ~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 237 TENP---EKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred ccCC---CccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 47899999999999999999865544
No 45
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.11 E-value=2.1e-07 Score=95.82 Aligned_cols=251 Identities=18% Similarity=0.168 Sum_probs=151.5
Q ss_pred CCCccccccHHH-HHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHH
Q 038741 16 DGRSKRTGTVWT-ASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAV 94 (465)
Q Consensus 16 ~~~~~~~~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~ 94 (465)
++..+|+.+.++ ......+.++|.|++.+|......+ .......++.+.+.........+..+.. ++.-.+-+.+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~---p~~GG~y~~~ 82 (466)
T COG0531 7 SSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAI---PSAGGAYAYA 82 (466)
T ss_pred chhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCeeeeh
Confidence 344445556677 8888899999999999999888765 2222222333344444444444533321 2333556668
Q ss_pred HHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHH---HHHHhcCCCc
Q 038741 95 KTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIV---EMFLSQIPNI 171 (465)
Q Consensus 95 ~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i---~~pl~~~~~l 171 (465)
++.+|++.++++.+..++.......+......+.+..+.+.. ... ..+ .+.....+.+ .+-+.-.+..
T Consensus 83 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~-~~~~~~~~~~~~~~~~~ln~~G~ 153 (466)
T COG0531 83 KRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGP---GLL-----SIG-PLLIILIALALIALLTLLNLRGI 153 (466)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---hhh-----cCC-chHHHHHHHHHHHHHHHHHHhhH
Confidence 889999998999999999888888888888877666554310 000 000 0122222222 2222334445
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcc-cccchhhHHHHHHHHHHHhccchhHHHHHH
Q 038741 172 HKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLT-AADKTWGMFSAIGNIAFACAYLQILIEIQD 250 (465)
Q Consensus 172 ~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 250 (465)
+..+.......+..+...++.....+.....+. ..... + .. .......+..++....++|.|-+...+..+
T Consensus 154 ~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~~~~~-~----~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~ 225 (466)
T COG0531 154 KASAKINSIITILKIIILLIFIILGLFAFGFSN---GNLFA-P----FNPGGGSFGGILAAILLAFFAFTGFEAIATLAE 225 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---cccCC-C----cccccchHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 555555444444444322222222222211111 11100 0 01 111223577899999999999999999999
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Q 038741 251 TLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGN 290 (465)
Q Consensus 251 ~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~ 290 (465)
|+||| +|+.+|++..++.++.++|....+......++
T Consensus 226 E~knp---~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 226 EVKNP---KRTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 99998 36689999999999999999998877777665
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.08 E-value=1.6e-06 Score=89.48 Aligned_cols=259 Identities=11% Similarity=-0.019 Sum_probs=137.5
Q ss_pred CCccccccHHHHHHHHHhhh-hhhhhhhHH-HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHH
Q 038741 17 GRSKRTGTVWTASAHIVTAI-VGSGVLSLA-WGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAV 94 (465)
Q Consensus 17 ~~~~~~~s~~~a~~~l~~~~-iG~GiL~LP-~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~ 94 (465)
++-+|+-|.++.+..-++.+ +|.|+.+++ .+....|- ..+...++.++.......-+.|..... ++.-..-..+
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~---P~aGG~Y~~~ 84 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARY---PISGAIYQWS 84 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhC---CCCCCHHHHH
Confidence 34567778888888777764 899999866 45555665 345555666666666666666643221 2333455567
Q ss_pred HHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCccc-ccCC--chhHHHHHH-HHHHhcCCC
Q 038741 95 KTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCK-FSNN--PFMIGIGIV-EMFLSQIPN 170 (465)
Q Consensus 95 ~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~--~~~~i~~~i-~~pl~~~~~ 170 (465)
++.+|+..++++.+..++.......+........+..+...... ...+.... -... .+.+...++ +.-+.-.+.
T Consensus 85 ~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g 162 (475)
T TIGR03428 85 RRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQI--IGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIG 162 (475)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--cccCccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999888766544444444444444333211000 00000000 0001 111111111 122223334
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHH
Q 038741 171 IHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQD 250 (465)
Q Consensus 171 l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 250 (465)
.|..+.+..+..+..+...+++++...... .+++. ..... .++ .........+..+.....|+|.+-+....+-+
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~-~~~~~-~~f~~-~~~--~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ae 237 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHA-QRGPG-VVFDT-SVT--GASPGYYGAFLVSGLMAAYVMVGFGSAGELSE 237 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcc-eeeec-CCC--CCCccHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 455555554444433321122221111111 11110 00000 000 00111123455566677899999999999999
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 038741 251 TLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALG 289 (465)
Q Consensus 251 ~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG 289 (465)
|+||| +|+.+|++..+..+..++|..+-+......+
T Consensus 238 E~knP---~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 238 ETKNP---RRVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HhcCc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999 4889999999999888766665554444333
No 47
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.05 E-value=8.4e-07 Score=91.56 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=44.9
Q ss_pred HHHHHhccchhHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 038741 234 NIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALG 289 (465)
Q Consensus 234 ~~~faf~~~~~i~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG 289 (465)
.+.|+|.+-+......+|+||| +|+.+|++..+..++.++|....+.-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4678999999999999999999 4789999999999999999886665444433
No 48
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.00 E-value=2e-06 Score=89.32 Aligned_cols=238 Identities=12% Similarity=0.024 Sum_probs=116.2
Q ss_pred ccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHH--HHHHHHHhhcCCCCCCccccHHHHHHHHc
Q 038741 21 RTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLY--SSGLLADCYRAPLSGNRNHTYRAAVKTYL 98 (465)
Q Consensus 21 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~--t~~lL~~~~~~~~~~~~~~sy~~l~~~~~ 98 (465)
++.+.++-++..+.++. ++-.+| .+++.|+ +.+...+++.+.+. ......|..... . .+.-..-..+++.+
T Consensus 4 ~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~-p-~~~GG~y~wv~~a~ 76 (507)
T TIGR00910 4 KKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVD-G-WEEGGIFAWVSNTL 76 (507)
T ss_pred cEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHccc-C-CCCCCeeeehhhcc
Confidence 44677777666666665 557888 5777883 44444444444433 444445543221 0 01123444588999
Q ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHH---HHHhcCCCcCchh
Q 038741 99 GGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVE---MFLSQIPNIHKLS 175 (465)
Q Consensus 99 G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~---~pl~~~~~l~~l~ 175 (465)
|++++++..+..++.......+........+..... .+. .. .+.+...+..+++ +-+...+..|..+
T Consensus 77 G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~----~~~-----~~-~~~~~~~i~~l~i~~~~t~~n~~G~k~~~ 146 (507)
T TIGR00910 77 GERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK----FPA-----LN-EDPIIKFIAALIIFWALAFSQFGGTKRTA 146 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cch-----hc-cCcHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999887777765543222222111111111111 000 00 1122222222222 2222344444444
Q ss_pred HHHHHHHHHH-HHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcC
Q 038741 176 WLSIIAAIMS-VSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKS 254 (465)
Q Consensus 176 ~~s~~~~~~~-~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 254 (465)
.++..+.+.. +...+++++..+.....+.+.....+ .+ +..+.....+....+....|+|.+-+......+|+||
T Consensus 147 ~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~---~~-~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~kn 222 (507)
T TIGR00910 147 KIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEID---SH-AFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELEN 222 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCc---HH-hcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccC
Confidence 4443332211 11111111111111111111110000 00 0111111123344555568999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 038741 255 SPPENKVMKKANVIATLTATTLYMLCGC 282 (465)
Q Consensus 255 ~~~~~~~~~~~~~~a~~~~~i~Y~~~g~ 282 (465)
| +|+++|++..++.++.++|....+
T Consensus 223 P---~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 223 P---GRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred C---cccccHHHHHHHHHHHHHHHHHHH
Confidence 9 478999999999999998876444
No 49
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.96 E-value=9.2e-07 Score=88.70 Aligned_cols=364 Identities=13% Similarity=0.039 Sum_probs=226.4
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhh-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 19 SKRTGTVWTASAHIVTAIVGSGVLS-LAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 19 ~~~~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
-+|+...+.-.+.-++..+|+|++- ...+.+++|-...++..++++.+.+..+.-|.|..-.- +..-+|.+.+.+.
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~---P~sGsF~~ya~rf 118 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFY---PVSGSFSTYATRF 118 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCchhhhhhhh
Confidence 4577778888999999999999875 89999999999999999999999999999999954332 3455799999999
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHH--hcCCCcCchh
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFL--SQIPNIHKLS 175 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl--~~~~~l~~l~ 175 (465)
.++-.++.+.+..++.-.-.+-.-++..+..++...+. ..+...|+.++.++++.+ .-.|......
T Consensus 119 vdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~E 186 (541)
T COG0833 119 VDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFGETE 186 (541)
T ss_pred cCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhcccccceeh
Confidence 99989999998888887777777777777766644311 123345666665554433 3455555554
Q ss_pred H-HHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccc-cCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhc
Q 038741 176 W-LSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEE-IGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLK 253 (465)
Q Consensus 176 ~-~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 253 (465)
+ +|.+=++.++.+.. ++.++..+..+.+.. . +.. |.-.-...+.+.++...+-+..|||.+.+.+---..|-+
T Consensus 187 fw~s~iKV~~ii~Fii--~gii~~~Gg~~~~~~--i-g~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~ 261 (541)
T COG0833 187 FWFSSIKVLTIIGFII--LGIIIICGGGPTHGY--I-GFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESE 261 (541)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHhcCCCCCCCC--c-ceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccC
Confidence 3 34444444443222 222222222221110 0 111 110011122355788888999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHhhh-hhhcccCCC-----------CCCccccCccCch--HHHHHHHHHHHHHHH
Q 038741 254 SSPPENKVMKKANVIATLTATTLYMLCGC-FGYAALGNH-----------APGNLLAGFYKPF--WLVDMANSFIVVHLL 319 (465)
Q Consensus 254 ~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~-~gy~~fG~~-----------~~~~il~~~~~~~--~~~~~~~~~~~~~~~ 319 (465)
|| +|..+|++.-...=..++|+..-+ .|.+.-.++ ..++....+++.+ .+..+.|..+.++++
T Consensus 262 nP---~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svl 338 (541)
T COG0833 262 NP---RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVL 338 (541)
T ss_pred Cc---hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHH
Confidence 99 477899988777777777766332 233322221 0111111111111 245566767777777
Q ss_pred HhhhhccccHHHHHHHHhhccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHcc--chHHHHHHHh
Q 038741 320 GAYQVMAQPVFYVIESWTSTRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALP--FFNEVLGLLG 397 (465)
Q Consensus 320 ~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~l~G 397 (465)
.+---.++..-+++..+-+... -.+++.+.+.. ..+...+.++.+.-+++++-+..-. -+.-++++.|
T Consensus 339 Sa~NS~lYasSR~L~sLA~~g~-APk~f~~~~r~---------GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg 408 (541)
T COG0833 339 SAANSGLYASSRMLYSLAKQGK-APKIFAKVDRR---------GVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISG 408 (541)
T ss_pred HHhhccchHHHHHHHHHHhcCC-CchHHHhhCCC---------CCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 6666556666666666554221 11122221111 2235566666666666666666633 3667777777
Q ss_pred hhhhhhHHHhhhHHHHHHHh
Q 038741 398 ALAYWPLTVYFPLEMYIAQK 417 (465)
Q Consensus 398 a~~~~~l~filP~l~~l~~~ 417 (465)
.. .+++.+-=++.|++.+
T Consensus 409 ~s--~~i~W~~I~~shirFR 426 (541)
T COG0833 409 LS--GFIAWGSICLSHIRFR 426 (541)
T ss_pred HH--HHHHHHHHHHHHHHHH
Confidence 43 4777888888898886
No 50
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.94 E-value=5.3e-07 Score=88.09 Aligned_cols=234 Identities=15% Similarity=0.101 Sum_probs=150.7
Q ss_pred cccHHHHHHHHHhhhhhhhhhhHHHHHHhh---chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHc
Q 038741 22 TGTVWTASAHIVTAIVGSGVLSLAWGIAQL---GWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYL 98 (465)
Q Consensus 22 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~---G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~ 98 (465)
|.|..|....+..+++|+|++.+|....+. ||+. .++.+.......++..+..+.. +..+..|..++.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~----~ll~~~~~l~~~~l~~~l~~~~----p~~~l~~~~~~~~ 72 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWIS----VLLGGLIGLLLALLIYYLLKRF----PGKTLVEISEKLF 72 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH----HHHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHh
Confidence 357899999999999999999999998766 4653 3333344444444444433322 3458999999999
Q ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHH
Q 038741 99 GGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLS 178 (465)
Q Consensus 99 G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 178 (465)
||+.+.++.....+..+......+...++.++... .+ + ...+.+....++..--...+.++.+...+
T Consensus 73 Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~----lp--------~-TP~~~i~~~~ll~~~y~a~~G~e~i~R~~ 139 (320)
T PF03845_consen 73 GKWLGKIINLLYILYFLLISALVLREFSEFIKTYL----LP--------E-TPIWVIILLFLLVAAYAARKGIEVIARVA 139 (320)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC--------c-CCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999988888777777777766666655432 10 0 01222222233333344566777777644
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCCch
Q 038741 179 IIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPE 258 (465)
Q Consensus 179 ~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~ 258 (465)
.+-....+. ..........++.+.+.-. +....+..+...+.....+.|.+-....-+...++++
T Consensus 140 ~~~~~~~~i----~~~~i~~~~~~~~~~~~l~--------P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~--- 204 (320)
T PF03845_consen 140 EILFPIFLI----LLLLILLLSIPNIDWDNLL--------PVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK--- 204 (320)
T ss_pred HHHHHHHHH----HHHHHHHHhcccCCHHHee--------CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---
Confidence 443332221 1111111112211111100 1112344567777777888888888888899999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC
Q 038741 259 NKVMKKANVIATLTATTLYMLCGCFGYAALGNHA 292 (465)
Q Consensus 259 ~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~ 292 (465)
+|..|....+..++.++|...-+.....||.+.
T Consensus 205 -~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 205 -KKLKKSLLIAILISGLFLLFIIFITIGVFGPEL 237 (320)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 889999999999999999998888888899763
No 51
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.78 E-value=9.1e-07 Score=91.32 Aligned_cols=372 Identities=12% Similarity=0.043 Sum_probs=214.6
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhh-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCcc-ccHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLS-LAWGIAQLGWITGVSTLLIFSSISLYSSGLLADC-YRAPLSGNRN-HTYRAAV 94 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~-~~~~~~~~~~-~sy~~l~ 94 (465)
+-+|+.+.+.-.+.=++.++|+|++= ...+.++.|-..-++..++.+.....+..-+.|. .+.+ +. -++-..+
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P----~~aGs~~~ya 102 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFP----VSAGSFYTYA 102 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecc----cccccceeee
Confidence 45777788888888999999999987 6778888887777777777777777777777774 2333 32 3455557
Q ss_pred HHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHH-H-HHHHHHHhcCCCcC
Q 038741 95 KTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIG-I-GIVEMFLSQIPNIH 172 (465)
Q Consensus 95 ~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i-~-~~i~~pl~~~~~l~ 172 (465)
++..|+-+.+.+.+-.++...-.+-+-....+.+++.+... ...... .+ ..+...|..+ . .++++.+...+-.-
T Consensus 103 ~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~--~~~~~~-~~-~~~~~~~~~~fla~~v~in~~gv~~~g 178 (554)
T KOG1286|consen 103 YRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGA--SLIGIL-VD-TVNPGGWIPDFLAFILIINLFGVLAYG 178 (554)
T ss_pred eeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc--cccccc-cc-CCCCCccHHHHHHHHHHHHHHHHhhcc
Confidence 78899999999999999999999999888888888877510 000000 00 1111222222 2 22233344444434
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhh-hhhccCCCCccccccccC-CCcccccchhhHHHHHHHHHHHhccchhHHHHHH
Q 038741 173 KLSWLSIIAAIMSVSYAGIGMGLAFT-KAVLGHGETTSLTGEEIG-PNLTAADKTWGMFSAIGNIAFACAYLQILIEIQD 250 (465)
Q Consensus 173 ~l~~~s~~~~~~~~~~~~i~~~~~i~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 250 (465)
..++.+...-+..++- ++++..++. .....++.+..- ...|+ +.-..+..+.++.+.+-+..|+|.+.+.+-..-+
T Consensus 179 e~ef~~~~~kvl~~v~-~~Il~iVi~~G~~~~d~~~~ig-~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~ 256 (554)
T KOG1286|consen 179 EVEFSLAFNKILTAVG-FIILAIVIIAGGGPADVKNWIG-FRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAE 256 (554)
T ss_pred ceeehHHHHHHHHHHH-HHHhheeeecCCCcCCcCCCcC-ccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHH
Confidence 4443333333322211 112222222 222222111110 00111 0001111255788999999999999999999999
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcc--cCCC-CCCcc-cc-------CccCchHHHHHHHHHHHHHHH
Q 038741 251 TLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAA--LGNH-APGNL-LA-------GFYKPFWLVDMANSFIVVHLL 319 (465)
Q Consensus 251 ~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~--fG~~-~~~~i-l~-------~~~~~~~~~~~~~~~~~~~~~ 319 (465)
|-||| ||..++++..++..++++|....+.--+. |.+. ..++. +. +.+..+.+-.+.++...+.++
T Consensus 257 E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~ 333 (554)
T KOG1286|consen 257 EAKNP---RKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLL 333 (554)
T ss_pred hccCC---cccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHH
Confidence 99999 48899999999999999999987643332 2120 11111 10 111111222367777777777
Q ss_pred HhhhhccccHHHHHHHHhhcc-CCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHcc-----chHHHH
Q 038741 320 GAYQVMAQPVFYVIESWTSTR-WPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALP-----FFNEVL 393 (465)
Q Consensus 320 ~s~pl~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp-----~~~~i~ 393 (465)
.+---.+++.-+.+..+-+.. .|+ ++.+-+..+.| ... ..+..+...+.++... .++.++
T Consensus 334 s~~n~~~y~~sR~l~amA~~G~~Pk--~f~~v~~~g~P---------~~a---~~v~~~~~~l~~~~~~~~~~~~f~~L~ 399 (554)
T KOG1286|consen 334 SSLNSSLYAGSRVLYALAKDGLAPK--FFARVDRRGVP---------LVA---VLVSGLFGALAALNFSLGAATVFNWLV 399 (554)
T ss_pred HHHHHHhHHhHHHHHHHHhcCCcch--HHhhcCCCCCc---------hhH---HHHHHHHHHHHHHHhccccchHHHHHH
Confidence 777666667666666654322 121 11111100112 222 2222233333333333 358888
Q ss_pred HHHhhhhhhhHHHhhhHHHHHHHhc
Q 038741 394 GLLGALAYWPLTVYFPLEMYIAQKN 418 (465)
Q Consensus 394 ~l~Ga~~~~~l~filP~l~~l~~~~ 418 (465)
++.|. ++++++.+=++.|++.++
T Consensus 400 ~~~si--~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 400 NLSSI--GTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHhH--HHHHHHHHHHHHHeeeee
Confidence 88873 357788888888888763
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.77 E-value=9e-08 Score=98.92 Aligned_cols=247 Identities=15% Similarity=0.116 Sum_probs=144.5
Q ss_pred Hhhhhhhhhhh-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCceehhHHHHH
Q 038741 33 VTAIVGSGVLS-LAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQY 111 (465)
Q Consensus 33 ~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~i~~~ 111 (465)
+..++|+|++. .+.+..+.|....++..++.+++...++.-+.+..+.- ++.-++-+.+++.+|+..+..+.+..+
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~---p~~Gg~y~y~~~~lg~~~Gf~~gw~y~ 83 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRF---PSAGGFYAYASRGLGPALGFAAGWAYW 83 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhh---ccccchhhhhhhccCCcCCceeeHHHH
Confidence 56788888877 77888899987778888888888888888888754432 345577788899999999999999977
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHHHHHHHHHHHHHHH
Q 038741 112 VLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGI 191 (465)
Q Consensus 112 ~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i 191 (465)
+.............+..++.... .. ..+ ....+.. .+..++.+++..+ .....|........-....+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~-~~~~~~~-~~~~i~~~~~~~l-~~~gv~~~~~~~~~~~~i~~~~li~ 156 (478)
T PF00324_consen 84 LSYIAAIAAEATAAGSFLQFWGY---FP-GLP-STWVWGI-LIAIIFILLITLL-NLFGVRVSGKIEFILTIIKLIALIA 156 (478)
T ss_pred HHHHHHHHhhhhhhhhhhccccc---cc-ccc-ccccccc-hhhhhhhhhhhhh-hhhhhhccchHHHHHHHHhhhHhhh
Confidence 77666666666555554443200 00 000 0000000 1122222222222 2222333333222222111111111
Q ss_pred hhhhh-hhhhhccCCCCc---ccccc---cc--CCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCCchhhHH
Q 038741 192 GMGLA-FTKAVLGHGETT---SLTGE---EI--GPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVM 262 (465)
Q Consensus 192 ~~~~~-i~~~~~~~~~~~---~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~~ 262 (465)
.+... +......++.+. ..+.. .. +.+.+....+.++..++....++|.+-+.+...-+|.||| +|+.
T Consensus 157 ~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~I 233 (478)
T PF00324_consen 157 FIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTI 233 (478)
T ss_pred hhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCc---hhhh
Confidence 11111 111111111111 00000 00 0000112235578999999999999999999999999999 4889
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCC
Q 038741 263 KKANVIATLTATTLYMLCGCFGYAALGNHA 292 (465)
Q Consensus 263 ~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~ 292 (465)
+|++..++....++|+......-...+.+.
T Consensus 234 Pra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 234 PRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 999999999999999998887666666553
No 53
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.67 E-value=1.2e-07 Score=82.19 Aligned_cols=217 Identities=14% Similarity=0.246 Sum_probs=135.1
Q ss_pred cHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcC------------C---C------
Q 038741 24 TVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRA------------P---L------ 82 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~------------~---~------ 82 (465)
|..-....++|.++|+|-|++|.+|+.+||++++.++.+.+.+++.+...++++... . +
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 334455677999999999999999999999999999999999999998888876200 0 0
Q ss_pred ----------------C---------C-------CccccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHH
Q 038741 83 ----------------S---------G-------NRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISML 130 (465)
Q Consensus 83 ----------------~---------~-------~~~~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~ 130 (465)
+ + .+....++++...|.|.+--+..++++++++|-...|....--+..
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 0 0 0223567788888999999999999999999999999876655444
Q ss_pred HHHhhcccccCC-----CCCccc------cc--------CCchhHHHHHH-HHHHhcCCCcCchhHHHHHHHHHHHHHHH
Q 038741 131 TIRKSNCFQKRG-----HGAQCK------FS--------NNPFMIGIGIV-EMFLSQIPNIHKLSWLSIIAAIMSVSYAG 190 (465)
Q Consensus 131 ~l~~~~~~~~~~-----~~~~~~------~~--------~~~~~~i~~~i-~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 190 (465)
.+. |..... ...+|. |. ++.+++++.++ .+|+.+. ++++.+.+-++-.++--. -
T Consensus 173 ~it---caa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~--~ 246 (319)
T KOG3832|consen 173 NIT---CAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWA--A 246 (319)
T ss_pred hhh---hhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHH--h
Confidence 332 321111 112332 11 12444555444 4566643 344444444333322110 0
Q ss_pred HhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCC
Q 038741 191 IGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSS 255 (465)
Q Consensus 191 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~ 255 (465)
.+.+.++.. .+. .++.. +.+++...+-++-..++..+|+|.+|.+.|.....++..
T Consensus 247 ~~~g~~l~t-mqa-eedaa-------~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 247 FILGISLAT-MQA-EEDAA-------AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred ccchhhhhh-hhh-ccccc-------ccCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 111112211 111 11111 123444455577788899999999999999988887743
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.58 E-value=7.2e-05 Score=70.54 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=95.7
Q ss_pred HHHHHHHHhhhhhhhhhh---HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCc
Q 038741 26 WTASAHIVTAIVGSGVLS---LAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRK 102 (465)
Q Consensus 26 ~~a~~~l~~~~iG~GiL~---LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~ 102 (465)
.+..+-.+.+++|+|.-+ +=.-|..-|+. |....++.+.+-..++.++.+..++- +..+|+|.-++.+|++.
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f----~a~~y~~~~~~v~~~~~ 80 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKF----NATSYREILKYVSGPKF 80 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHh----cccchHHHHHHHhhHHH
Confidence 344556677999999877 33445566665 66666778888888888877765443 56799999999999999
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHH
Q 038741 103 HKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLS 178 (465)
Q Consensus 103 ~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 178 (465)
..+.|+.+.+.+++.++.-+-..+..+++.+. .+.+.-.++..+++..+.+.++.+.+-...
T Consensus 81 ~ki~d~~iif~lf~~~vVM~AGags~~~e~~~--------------lP~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 81 AKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG--------------LPYWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHhC--------------ccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 99999999999999999999888887776542 111111244444455556677666665443
No 55
>PRK11375 allantoin permease; Provisional
Probab=98.46 E-value=0.00093 Score=68.85 Aligned_cols=270 Identities=11% Similarity=0.037 Sum_probs=132.0
Q ss_pred CcccccccCCCCCCCC----CCccccccHHHHHHHHHhhh-------hhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHH
Q 038741 1 MDAQAYKVADGGVDDD----GRSKRTGTVWTASAHIVTAI-------VGSGVLSLAWGIAQLGWITGVSTLLIFSSISLY 69 (465)
Q Consensus 1 ~~~~~~~~~~~~~~~~----~~~~~~~s~~~a~~~l~~~~-------iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~ 69 (465)
||++++..+....++| ++++|+.++++-+..-.... ++.|.+++. .++.-++...++-.++...
T Consensus 1 ~~~~~~~~~~~~~n~dl~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~G-----Ls~~~ai~ai~lG~~i~~~ 75 (484)
T PRK11375 1 MEHQRKLFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILG-----LSTFSIMLAIILSAFFIAA 75 (484)
T ss_pred CCCCCCCCCCCCcCCCCCcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHHHH
Confidence 6777664444444433 34566566555444333333 333443321 2233344443333333222
Q ss_pred HHHHHHHhhcCCCCCCccccHHHHHHHHcCCCceehhHHHHH-HHHHHHHHHHHHHHHhhHHHHHhhcccccCC--CCCc
Q 038741 70 SSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQY-VLLVGMVVGYTITAAISMLTIRKSNCFQKRG--HGAQ 146 (465)
Q Consensus 70 t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~i~~~-~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~--~~~~ 146 (465)
-+.+..+. .. +...++.-+.+..||.+|..+..+... +..+|=-.......++.+..+++........ ++.+
T Consensus 76 ~~~l~g~~--G~---~~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~ 150 (484)
T PRK11375 76 VMVLNGAA--GS---KYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFT 150 (484)
T ss_pred HHHHhccc--cc---ccCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 22222221 11 134588999999999999999888885 5666766677777888888776543211110 0000
Q ss_pred -ccccCCchh--HHHHHHHHHHhcCCCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCc-cccccccCCCcccc
Q 038741 147 -CKFSNNPFM--IGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETT-SLTGEEIGPNLTAA 222 (465)
Q Consensus 147 -~~~~~~~~~--~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~ 222 (465)
-..+...++ +++.++..++. ....+.++.++..+...............+... +..+. ..++. + .....
T Consensus 151 ~~g~~~~~~i~~~i~~~l~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~---g~~~~~~~~~~--~-~~~~~ 223 (484)
T PRK11375 151 LLGLSLPGLITFLIFWLVNVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV---GIGPIFDYIPS--G-IQKAE 223 (484)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchhhccCcc--c-ccCCc
Confidence 011111121 23344445554 455677777776666544421121111222221 11000 00000 0 00111
Q ss_pred cchhhHHHHHHHHHHHhc-cchhHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhh----hcccCCC
Q 038741 223 DKTWGMFSAIGNIAFACA-YLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFG----YAALGNH 291 (465)
Q Consensus 223 ~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~g----y~~fG~~ 291 (465)
...+.+..++...+=++. .-.+.|++.|..|++ |+-.+....+..+...+...+|+.. ...||..
T Consensus 224 ~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~ 293 (484)
T PRK11375 224 NSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGAD 293 (484)
T ss_pred chHHHHHHHHHHHHHHHHHHHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 223455555544333443 445889999999987 6666666666666666655555433 3456654
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.34 E-value=0.00069 Score=69.27 Aligned_cols=190 Identities=13% Similarity=0.078 Sum_probs=110.8
Q ss_pred ccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCccccc--CCchhHHHHHHHHHH
Q 038741 88 HTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFS--NNPFMIGIGIVEMFL 165 (465)
Q Consensus 88 ~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~~i~~~i~~pl 165 (465)
.++.-+.|..||.+|..+..++..+...|-........++.+..+++.... ...+ .+.+.+ .....+++.++.+++
T Consensus 76 l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~-~~~~-~~~~~t~~~~~~~~i~~~l~~~~ 153 (442)
T TIGR00800 76 LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFP-GYLH-LGNGMTTLELICFIIFWALVLVF 153 (442)
T ss_pred CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc-cccc-cCCcccHHHHHHHHHHHHHHHHH
Confidence 477888999999999999999999999999999999999999888765311 1000 000000 012234445555665
Q ss_pred hcCCCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccC-CCCccccccccCCCcccccchhhHHHHHHHHHH-Hhccch
Q 038741 166 SQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGH-GETTSLTGEEIGPNLTAADKTWGMFSAIGNIAF-ACAYLQ 243 (465)
Q Consensus 166 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-af~~~~ 243 (465)
....-.+-.+.....+...... .+...+....+.+ ..+.. ...+ ...+....+.+..++...+= .-..-.
T Consensus 154 ~~~~g~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~g~~~~~-~~~~---~~~~~~~~~~f~~~~~~~~g~~~s~~~ 225 (442)
T TIGR00800 154 LFFFGYKIRHLFEWLAVVPPFA----AFGMLIWALSKAHGKGPLG-ELTG---TLHGSTGAWAFLYALSLVIGSFATWAT 225 (442)
T ss_pred HHcCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCCCccc-cCCC---CCCcchhHHHHHHHHHHHHHHHHHHHc
Confidence 5565555555555555543321 1111111112211 11100 0000 00112234555555554332 235567
Q ss_pred hHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcc----cCCC
Q 038741 244 ILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAA----LGNH 291 (465)
Q Consensus 244 ~i~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~----fG~~ 291 (465)
+.++..+.+|++ ++-.+....++....+....+|..+... +|+.
T Consensus 226 ~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 226 NAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred CchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 899999999987 5566667777777777777887777765 7765
No 57
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.99 E-value=0.012 Score=58.98 Aligned_cols=177 Identities=12% Similarity=0.123 Sum_probs=106.1
Q ss_pred cccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHh
Q 038741 87 NHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLS 166 (465)
Q Consensus 87 ~~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~ 166 (465)
..++.-+.|..||++|..+..+...+...|--.......++.++.+.+.. .. . .+...+..+.+++..+.+
T Consensus 57 Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~-~~---~-----~~~~~~~~i~~~l~~~~~ 127 (386)
T TIGR02358 57 GLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRL-FG---E-----ESPMLWILIVGILVTLWL 127 (386)
T ss_pred CcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC---C-----CchHHHHHHHHHHHHHHH
Confidence 34788899999999999999999999999999999999999999887532 11 0 011223344444444444
Q ss_pred cCCCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHH-HHhccchhH
Q 038741 167 QIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIA-FACAYLQIL 245 (465)
Q Consensus 167 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~i 245 (465)
. ...|.++++..++........+. .. .......+.....+ .+. + ..+..++.... +.-......
T Consensus 128 ~-~G~~~i~~~~~~~~~~~~i~~~~---~~-~~~~~~~~~~~~~~-------~~~--~-~s~~~~~~~~~~~~~swa~~~ 192 (386)
T TIGR02358 128 L-SGPLAFVWLNNWSVWLLLIATLW---LL-VVVFSKADLSELWN-------RAG--D-MSFAVAVELVIAMPLSWLPLI 192 (386)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHhccchhhhcC-------CCC--C-ccHHHHHHHHHHHHHHHHHHc
Confidence 3 35677777777766644421111 11 11111111100000 011 1 22222222211 111234558
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCC
Q 038741 246 IEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNH 291 (465)
Q Consensus 246 ~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~ 291 (465)
+++.+..|++ +|..+....+..+...+-..+|.....+.++.
T Consensus 193 ~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 193 ADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred cchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8999998877 77777888888888888888998777766653
No 58
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.92 E-value=0.015 Score=58.33 Aligned_cols=206 Identities=14% Similarity=0.106 Sum_probs=115.2
Q ss_pred HHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcC--
Q 038741 91 RAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQI-- 168 (465)
Q Consensus 91 ~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~-- 168 (465)
-.+++..||.+|.++..+.+.+.+.|-.....+..++.... . . ..+..+++++.+.++...+..
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~------~--~------~~~~~~~ili~g~l~~l~~ifG~ 149 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS------G--T------GLPVWAGILIIGVLMTLVTIFGY 149 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc------C--C------CCcHHHHHHHHHHHHHHHHHHhH
Confidence 34578889999999999999999999999999888886111 0 0 233355666666555444433
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHH-HhccchhHHH
Q 038741 169 PNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAF-ACAYLQILIE 247 (465)
Q Consensus 169 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-af~~~~~i~~ 247 (465)
|.++.+...+..-....+. ..++......... . ..+ ..+..+..++..+++...= .-..-+...+
T Consensus 150 r~l~~l~~~a~~~~~~lf~-------~l~~~~~~~~~~~---~-~~~---~~~~~~~~~fl~a~slv~g~~~sw~~~~aD 215 (442)
T COG1457 150 RALHKLERIAVPLLLLLFL-------YLLALLFRSKGGL---D-ALW---VKGPTSPLSFLSALSLVIGSFASWGPYAAD 215 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHhccccc---c-eee---ccCCCcchhHHHHHHHHHHHHHhhhhhhhh
Confidence 3344444444333332222 1222222211110 0 000 1112223334444333222 2256678889
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC-CCccccCccCchHHHHHHHHHHHHHHHHhhhhcc
Q 038741 248 IQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHA-PGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMA 326 (465)
Q Consensus 248 i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~-~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~ 326 (465)
+.+-+|++++ +|.-.....+......+-+++|.....+=|+.. ..++...+.+ +...+-+.+.++...+--..+
T Consensus 216 ysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nl 290 (442)
T COG1457 216 YSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNL 290 (442)
T ss_pred hhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHH
Confidence 9999999833 466677778888888888888998888888765 3333333311 333444444445444444443
Q ss_pred ccH
Q 038741 327 QPV 329 (465)
Q Consensus 327 ~p~ 329 (465)
++.
T Consensus 291 Ysa 293 (442)
T COG1457 291 YSA 293 (442)
T ss_pred HHH
Confidence 333
No 59
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.92 E-value=0.012 Score=59.66 Aligned_cols=64 Identities=9% Similarity=0.047 Sum_probs=48.6
Q ss_pred chhhHHHHHHHHHHHhccchhHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Q 038741 224 KTWGMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGN 290 (465)
Q Consensus 224 ~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~ 290 (465)
.-|.+.-++-.-++.+.|-...+.+.+|-+++ +++.+|.+..+..+++++=..+-+.-..+-++
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNA---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcch---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34566667777788889999999999999998 37788998888888877666655555555554
No 60
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.91 E-value=0.0038 Score=63.10 Aligned_cols=148 Identities=9% Similarity=0.180 Sum_probs=83.9
Q ss_pred cccccHHHHHHHHHhhhhhhh-hhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHc
Q 038741 20 KRTGTVWTASAHIVTAIVGSG-VLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYL 98 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~ 98 (465)
.|+.+++...+++..+.+|++ .++.|-...+.|+.. ....+............+.+-.++ .+..|..|.-++-+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~----~~~~T~~e~~~~Ry 79 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRR----SGAVTIPEYLEKRY 79 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHH----TT--SHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcc----cchhhhhhhhhhhc
Confidence 355678888888888888775 556888888888742 222232333333333444443443 36789999999999
Q ss_pred CCCc--eehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhH
Q 038741 99 GGRK--HKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSW 176 (465)
Q Consensus 99 G~~~--~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 176 (465)
|++. +.+..+...+.........+...+..++.+.. ++....+++.+++++......-++...+
T Consensus 80 g~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~iYt~~GGl~av~~ 145 (406)
T PF00474_consen 80 GSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVIIYTFFGGLRAVAW 145 (406)
T ss_dssp -HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT------S
T ss_pred CCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHHHhhhhhhHhhhhH
Confidence 9988 66666666666666667777777776665532 2223344555666666777888888887
Q ss_pred HHHHHHHHHH
Q 038741 177 LSIIAAIMSV 186 (465)
Q Consensus 177 ~s~~~~~~~~ 186 (465)
...+-.+..+
T Consensus 146 td~iQ~~i~~ 155 (406)
T PF00474_consen 146 TDFIQGVIMI 155 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776665444
No 61
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.79 E-value=0.063 Score=55.59 Aligned_cols=149 Identities=10% Similarity=0.039 Sum_probs=86.9
Q ss_pred cccccHHHHHHHHHhhhhhh-hhhhHHHHHHhhchHH---HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHH
Q 038741 20 KRTGTVWTASAHIVTAIVGS-GVLSLAWGIAQLGWIT---GVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVK 95 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~---g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~ 95 (465)
.|+.+++.....+..+.+|+ ..++.|-...+.|+.. +............+-+..+.+-.|+ .+..|..|+-+
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~----~~~~T~~e~l~ 115 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK----YNAVTLNDMLR 115 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCccHHHHHH
Confidence 56667888888887777766 4556776666667531 1111111111111122222222232 26789999999
Q ss_pred HHcCCCc-eehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCch
Q 038741 96 TYLGGRK-HKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKL 174 (465)
Q Consensus 96 ~~~G~~~-~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 174 (465)
+-||++. +.+..+...+..++...+.+...+..++.+.+ ++....+++.++++...+...-++..
T Consensus 116 ~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GGl~av 181 (483)
T PRK09442 116 ARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAFGGFRAV 181 (483)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 9998764 55556555555555556666666676665542 22233445556666677778888888
Q ss_pred hHHHHHHHHHHH
Q 038741 175 SWLSIIAAIMSV 186 (465)
Q Consensus 175 ~~~s~~~~~~~~ 186 (465)
.+...+-.+..+
T Consensus 182 ~~TD~iQ~~i~~ 193 (483)
T PRK09442 182 VLTDALQGIVML 193 (483)
T ss_pred HHHHHHHHHHHH
Confidence 887777655444
No 62
>PRK11017 codB cytosine permease; Provisional
Probab=97.71 E-value=0.024 Score=57.23 Aligned_cols=174 Identities=17% Similarity=0.148 Sum_probs=91.6
Q ss_pred cccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHh
Q 038741 87 NHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLS 166 (465)
Q Consensus 87 ~~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~ 166 (465)
..++.-+.|..||.+|..+..+...+...|-........++.++.+.. .+...+.+++.++..+.+
T Consensus 70 G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------------~~~~~~~~i~~~l~~~~~ 135 (404)
T PRK11017 70 GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------------LDINLLIVLSGLLMTVTA 135 (404)
T ss_pred CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHH
Confidence 358899999999999999999888887777666665566665554421 111224455555555544
Q ss_pred cCCCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHh-ccchhH
Q 038741 167 QIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFAC-AYLQIL 245 (465)
Q Consensus 167 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i 245 (465)
... .+.++.++..+........+. ..+ ....+.+....... ..+. ....+..++...+=.+ ..-.+.
T Consensus 136 ~~G-~~~i~~~~~~~~p~~~~~~~~---~~~-~~~~~~~g~~~~~~------~~~~-~~~~~~~a~~~~~g~~~~~~~~~ 203 (404)
T PRK11017 136 YFG-ISALTILSRIAVPAIALLGGY---SVW-LAVNDVGGLDGLKA------IVPA-EPLDFSAALTLVVGSFISGGTLT 203 (404)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHH---HHH-HHHhccCchhhhhc------CCCC-CcccHHHHHHHHHHHHHHhHhcC
Confidence 332 344555544444333221111 111 11111110000000 0001 1123443333322222 446778
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Q 038741 246 IEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGN 290 (465)
Q Consensus 246 ~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~ 290 (465)
++..+..|++ ++-......+..+...+...+|.......|+
T Consensus 204 ~DysRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 204 ADFVRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred CChHhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888988876 5544555666666666677777766666664
No 63
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.66 E-value=0.098 Score=53.99 Aligned_cols=149 Identities=9% Similarity=0.001 Sum_probs=91.9
Q ss_pred cccccHHHHHHHHHhhhhhhhhh-hHHHHHHhhchHHHHHHHH--HHHHHH-HHHHHHHHHhhcCCCCCCccccHHHHHH
Q 038741 20 KRTGTVWTASAHIVTAIVGSGVL-SLAWGIAQLGWITGVSTLL--IFSSIS-LYSSGLLADCYRAPLSGNRNHTYRAAVK 95 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~--~~~~l~-~~t~~lL~~~~~~~~~~~~~~sy~~l~~ 95 (465)
.|+.+++.....+..+.+|++.+ +.|-...+.|+........ ..+.+. .+-...+.+..++ .+..|.+|.-+
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~T~~e~l~ 114 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRK----YNAITINDVLK 114 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCccHHHHHH
Confidence 56778899999999888887655 4777666777631111000 011110 1111122222232 26789999999
Q ss_pred HHcCCCc-eehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCch
Q 038741 96 TYLGGRK-HKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKL 174 (465)
Q Consensus 96 ~~~G~~~-~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 174 (465)
+-||++. +.+..++..+..++...+.+...+..++.+.+ ++....+++.++++.......-++..
T Consensus 115 ~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG~~av 180 (471)
T TIGR02119 115 ARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLIYTTFGGFRAV 180 (471)
T ss_pred HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999664 67778877777777777777777777766542 22233445555556666777788888
Q ss_pred hHHHHHHHHHHH
Q 038741 175 SWLSIIAAIMSV 186 (465)
Q Consensus 175 ~~~s~~~~~~~~ 186 (465)
.+...+-.+..+
T Consensus 181 ~~td~iQ~~v~~ 192 (471)
T TIGR02119 181 ALTDAIQGIVMF 192 (471)
T ss_pred HHHHHHHHHHHH
Confidence 887777655443
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.57 E-value=0.09 Score=53.16 Aligned_cols=147 Identities=14% Similarity=0.170 Sum_probs=92.4
Q ss_pred ccccHHHHHHHHHhhhhhhh-hhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcC
Q 038741 21 RTGTVWTASAHIVTAIVGSG-VLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLG 99 (465)
Q Consensus 21 ~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G 99 (465)
|+.+++...+.+..+.+|++ .++.|....+.|+. +....+...........+..+..++ .+..|..|.-+.-||
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~T~~e~l~~Ryg 77 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFIN----NGAYTMPEYLEKRFG 77 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----cCCCchhHHHHHHhC
Confidence 55567777778877777654 45578777777753 2222222222223344444443332 257899999999999
Q ss_pred CC-ceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHH
Q 038741 100 GR-KHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLS 178 (465)
Q Consensus 100 ~~-~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 178 (465)
++ .+.+..+...+..+......+...+..++.+.+ ++...-+++.+.+++......-++...+.-
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td 143 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITILYTVFGGLKAVVWTD 143 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHHHHHcchHHHHHHH
Confidence 84 667777777777777888888888877776642 222333445555556666777788888777
Q ss_pred HHHHHHHH
Q 038741 179 IIAAIMSV 186 (465)
Q Consensus 179 ~~~~~~~~ 186 (465)
.+-.+..+
T Consensus 144 ~iQ~~i~~ 151 (407)
T TIGR00813 144 TIQAVIMI 151 (407)
T ss_pred HHHHHHHH
Confidence 77655443
No 65
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.43 E-value=0.2 Score=51.90 Aligned_cols=148 Identities=9% Similarity=0.016 Sum_probs=93.8
Q ss_pred cccccHHHHHHHHHhhhhh-hhhhhHHHHHHhhchHHHHHHHH---HHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHH
Q 038741 20 KRTGTVWTASAHIVTAIVG-SGVLSLAWGIAQLGWITGVSTLL---IFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVK 95 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~af~~~G~~~g~i~l~---~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~ 95 (465)
.|+-+.+-......-+..+ .-.+++|-.....|+....+... .....-.+-...+.+-. +.++..|.+|.-+
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~----~~~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA----KARGATTIPDFLE 112 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCCccHHHHHH
Confidence 3433455666666666666 78888999999888743333322 22222233333433322 2247889999999
Q ss_pred HHcC-CCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCch
Q 038741 96 TYLG-GRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKL 174 (465)
Q Consensus 96 ~~~G-~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 174 (465)
+-|| ++.+.+..+...+...+-+..-+...+..++.... .+...-.++.+.++..-...--+++.
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------------i~~~~~~~~~~~~v~~Yt~~gG~~av 178 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------------ISYVTGILIGALIVALYTFLGGLRAV 178 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------------CCHHHHHHHHHHHHHHHHHHcChhHH
Confidence 9999 88899999999999999999988888887754331 11122223344555555666677777
Q ss_pred hHHHHHHHHHH
Q 038741 175 SWLSIIAAIMS 185 (465)
Q Consensus 175 ~~~s~~~~~~~ 185 (465)
.+...+-....
T Consensus 179 ~~Td~iqg~im 189 (493)
T COG0591 179 VWTDFIQGLIM 189 (493)
T ss_pred HHHHHHHHHHH
Confidence 77766655433
No 66
>PRK12488 acetate permease; Provisional
Probab=97.38 E-value=0.26 Score=51.93 Aligned_cols=147 Identities=13% Similarity=0.093 Sum_probs=91.0
Q ss_pred cccccHHHHHHHHHhhhhhhhh-hhHHHHHHhhchHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 20 KRTGTVWTASAHIVTAIVGSGV-LSLAWGIAQLGWITGVSTLLIFSSISLY-SSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~i~l~~~~~l~~~-t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
.|+.+++...+.+..+.++++. ++.|-.....|+-. ... .+...+.+. ...++.+-.|+ .+..|.+|.-++=
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~~-~~g~~~g~~~~~~~~a~~lr~----~g~~T~~d~l~~R 139 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LLY-ALGVLAGWPIILFLIAERLRN----LGKYTFADVVSYR 139 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HHH-HHHHHHHHHHHHHHHHHHHHH----CCCcchHHHHHHH
Confidence 5667888888888888887765 66887777778632 111 111111111 12223332222 1467999998888
Q ss_pred cC-CCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhH
Q 038741 98 LG-GRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSW 176 (465)
Q Consensus 98 ~G-~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 176 (465)
|| |+.+.+..+...+.........+...+..++.++. ++...-+++.++++..-+...-++...+
T Consensus 140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T PRK12488 140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVLYVTFGGMLATTW 205 (549)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 87 55788888777777776677777777776665542 2223334555566666667778888888
Q ss_pred HHHHHHHHHH
Q 038741 177 LSIIAAIMSV 186 (465)
Q Consensus 177 ~s~~~~~~~~ 186 (465)
...+-.+..+
T Consensus 206 td~iQ~~im~ 215 (549)
T PRK12488 206 VQIIKAVLLL 215 (549)
T ss_pred HHHHHHHHHH
Confidence 7777655443
No 67
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.93 E-value=0.028 Score=57.45 Aligned_cols=250 Identities=14% Similarity=0.075 Sum_probs=113.4
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQL--GWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVK 95 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~--G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~ 95 (465)
+++|+.+.++-+..-....+....+.+....... ++.-+++..++-.++...-.-+......+ .-.++.-++|
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r-----~Gl~~~v~sR 78 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR-----TGLPTMVLSR 78 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC-----C---HHHHTT
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc-----cCCCchhcch
Confidence 3566666666666656555555554444433222 33344444443333333322222221111 2347788899
Q ss_pred HHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCC-CcccccCCchh--HHHHHHHHHHhcCCCcC
Q 038741 96 TYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHG-AQCKFSNNPFM--IGIGIVEMFLSQIPNIH 172 (465)
Q Consensus 96 ~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~--~i~~~i~~pl~~~~~l~ 172 (465)
..||.+|..+..+...+...|-...-....++.+..+.+....+..... .........++ ++..++..+. .....+
T Consensus 79 ~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~g~~ 157 (440)
T PF02133_consen 79 ASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLF-AIYGMK 157 (440)
T ss_dssp TTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHH-HCTHHH
T ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHH-HhcCHH
Confidence 9999999999999999999999999999999999998875311000000 00001111121 1222222222 334455
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHh-ccchhHHHHHHh
Q 038741 173 KLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFAC-AYLQILIEIQDT 251 (465)
Q Consensus 173 ~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~ 251 (465)
.++.+.......... ..+...++...+.+. ++... .. ..+.. ...+..++...+-.+ ..-.+.++..+.
T Consensus 158 ~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~--~~--~~~~~-~~~~~~~i~~~~~~~~~~~~~~~DysRy 227 (440)
T PF02133_consen 158 ALRRLAVIAAPILLV---VFIGMLIWALSKAGG--GPLLS--AP--ASPSP-SGSFLAAIALVIGSWISWAPNASDYSRY 227 (440)
T ss_dssp HHHHHHHCCHHHHHH---HHHHHHHHHHHHCT---HHHCC--S----S-----S-HHHHHHHHHCCCHHHHCCCHHHHTT
T ss_pred HHHhHHhhhhHHHHh---hhhheeEEEeecCCc--chhhh--Cc--ccchh-HHHHHHHHHHHHhhhhhhhhccccHHhh
Confidence 565555554443321 111122222222211 00100 00 01010 002333333222222 233455688888
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 038741 252 LKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAA 287 (465)
Q Consensus 252 m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~ 287 (465)
+|++ ++-.+....+..........+|+.+...
T Consensus 228 ~~~~----~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 228 AKSD----TSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp C--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC----CCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 8876 6666677777777777777777766553
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.65 E-value=0.83 Score=45.44 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=43.1
Q ss_pred HHHHhhhhhhhhhhHHHHHH-hhc--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCceehh
Q 038741 30 AHIVTAIVGSGVLSLAWGIA-QLG--WITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKIC 106 (465)
Q Consensus 30 ~~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~ 106 (465)
+.++.-.+|+|.|-.|-... ++| |..+.+..++.+...-..+.. . .++. + .+|.++.++. ||+...+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----a-v~~~--g-G~~~~l~~~~-g~~f~~lf 72 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----A-LALV--G-GGYDSLSARI-GKVFGILF 72 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----e-eeec--C-CCHHHHHHHh-ChHHHHHH
Confidence 34667789999999986655 444 455555555444444333322 1 1111 1 3788877664 56666666
Q ss_pred HHHHHHH
Q 038741 107 GLVQYVL 113 (465)
Q Consensus 107 ~i~~~~~ 113 (465)
.+.+++.
T Consensus 73 ~~~~~l~ 79 (378)
T TIGR00796 73 TVILYLT 79 (378)
T ss_pred HHHHHHH
Confidence 5555543
No 69
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.57 E-value=0.22 Score=48.52 Aligned_cols=113 Identities=17% Similarity=0.256 Sum_probs=88.1
Q ss_pred CCCCccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHH
Q 038741 15 DDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAV 94 (465)
Q Consensus 15 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~ 94 (465)
+|+.+.-+.+.+-.+-+=+.++-|+|-+.=|-.-..-||+++.+++++-+....--.....-.... + ++-.|.+|++
T Consensus 44 ~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv--R-~~G~Si~~i~ 120 (376)
T PF02554_consen 44 NDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV--R-HKGKSIGEIA 120 (376)
T ss_pred CCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh--c-CCCccHHHHH
Confidence 567776666788888899999999999999999999999999999776544443333333221111 1 2445999999
Q ss_pred HHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHH
Q 038741 95 KTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISML 130 (465)
Q Consensus 95 ~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~ 130 (465)
++..||+++.+..+..++.+.....++....++.+.
T Consensus 121 ~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 121 GKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFV 156 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999887777654
No 70
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=96.56 E-value=1.3 Score=46.65 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=82.9
Q ss_pred cccccHHHHHHHHHhhhhhh-hhhhHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 20 KRTGTVWTASAHIVTAIVGS-GVLSLAWGIAQLGWITGVSTLLIFSSISL-YSSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l~~~~~l~~-~t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
.|+.+++.....+..+.+++ ..++.|-...+.|+- +....+ ...+.+ ....++.+=.|. .+.+|.+|.-++=
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr----~g~~T~~d~l~~R 139 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRN----LGRYTFADVASYR 139 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHH----cCCccHHHHHHHH
Confidence 45566777777777776664 567788777777763 221111 111111 122333332222 1457999998888
Q ss_pred cCCC-ceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhH
Q 038741 98 LGGR-KHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSW 176 (465)
Q Consensus 98 ~G~~-~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 176 (465)
||.+ .+.+..+...+.........+...+..++.++. ++...-+++.++++..-....-++...+
T Consensus 140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T TIGR02711 140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVMYVLFGGMLATTW 205 (549)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 8754 566666666665555555666666666655532 2222334455555555566667777777
Q ss_pred HHHHHHHHH
Q 038741 177 LSIIAAIMS 185 (465)
Q Consensus 177 ~s~~~~~~~ 185 (465)
.-.+-.+..
T Consensus 206 td~iQ~~im 214 (549)
T TIGR02711 206 VQIIKAVLL 214 (549)
T ss_pred HHHHHHHHH
Confidence 766655433
No 71
>PRK09395 actP acetate permease; Provisional
Probab=96.55 E-value=1.3 Score=46.61 Aligned_cols=146 Identities=12% Similarity=0.102 Sum_probs=84.5
Q ss_pred cccccHHHHHHHHHhhhhhhh-hhhHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 20 KRTGTVWTASAHIVTAIVGSG-VLSLAWGIAQLGWITGVSTLLIFSSISL-YSSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~l~~-~t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
.|+.+++...+.+..+.++++ .++.|-...+.|+.. ....+ ...+.. ....++.+-.|+ .+.+|+.|.-+.=
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~-~~~~g~~~~~~~~~~~~r~----~g~~T~~d~l~~R 141 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSI-GFLVGWPIILFLIAERLRN----LGKYTFADVASYR 141 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHH-HHHHHHHHHHHHHHHHHhh----CCCccHHHHHHHH
Confidence 466677888888888877754 456887777778632 11111 111111 112223332232 2568999999888
Q ss_pred cCC-CceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhH
Q 038741 98 LGG-RKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSW 176 (465)
Q Consensus 98 ~G~-~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 176 (465)
||+ +.+.+..+...+.......+.+...+..++.++. ++...-+++.+++++.-+...-++...+
T Consensus 142 ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~av~~ 207 (551)
T PRK09395 142 LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLATTW 207 (551)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 885 4777777666665555555555556665555432 2223334555556666666777777777
Q ss_pred HHHHHHHHH
Q 038741 177 LSIIAAIMS 185 (465)
Q Consensus 177 ~s~~~~~~~ 185 (465)
.-.+-.+..
T Consensus 208 TD~iQ~iim 216 (551)
T PRK09395 208 VQIIKAVLL 216 (551)
T ss_pred HHHHHHHHH
Confidence 766554433
No 72
>PRK00701 manganese transport protein MntH; Reviewed
Probab=96.09 E-value=2 Score=43.84 Aligned_cols=45 Identities=11% Similarity=0.024 Sum_probs=34.8
Q ss_pred ccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 038741 88 HTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTI 132 (465)
Q Consensus 88 ~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l 132 (465)
.+..|+.++-+||+..++..+...+...+..++-+...+..++.+
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999998888877777777777777777666666544
No 73
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.03 E-value=2.3 Score=44.12 Aligned_cols=152 Identities=7% Similarity=0.047 Sum_probs=80.0
Q ss_pred cccccHHHHHHHHHhhhhhhh-hhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccHHHHHHHH
Q 038741 20 KRTGTVWTASAHIVTAIVGSG-VLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYR-APLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~-~~~~~~~~~sy~~l~~~~ 97 (465)
.|+.+++...+.+..+.+++. .++.|-...+.|+.. ........+........+.+-.+ ..+.+.+..|..|.-+.=
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENR 113 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHH
Confidence 566678888888887777655 456886666777642 11111111111222333332112 101023677999999999
Q ss_pred cCCCceehh---HHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCch
Q 038741 98 LGGRKHKIC---GLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKL 174 (465)
Q Consensus 98 ~G~~~~~~~---~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 174 (465)
||++.+.+- .+...+........-+...+..++.+++ ++...-+++.++++..-....-++..
T Consensus 114 yg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGl~av 179 (487)
T TIGR02121 114 FNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALIIVIYTFFGGFLAV 179 (487)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 997655443 3333333333333444445555554432 22233344555555555667777777
Q ss_pred hHHHHHHHHHHH
Q 038741 175 SWLSIIAAIMSV 186 (465)
Q Consensus 175 ~~~s~~~~~~~~ 186 (465)
.+.-.+-.+..+
T Consensus 180 ~~TD~iQ~~i~~ 191 (487)
T TIGR02121 180 SWTDFVQGLLMF 191 (487)
T ss_pred HHHHHHHHHHHH
Confidence 777666555443
No 74
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=95.99 E-value=0.19 Score=50.54 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=54.3
Q ss_pred cccccHHHHHHHHHhhhhhhh-hhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHH---HHHhhcCCCCCCccccH-----
Q 038741 20 KRTGTVWTASAHIVTAIVGSG-VLSLAWGIAQLGWITGVSTLLIFSSISLYSSGL---LADCYRAPLSGNRNHTY----- 90 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~l---L~~~~~~~~~~~~~~sy----- 90 (465)
+++.|.+|+.+..+.+.+|+| ++++|-+.+..| ..+++++-+.+++..-+... |..-+|+. ++..+|
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~---~~~g~~~GGP~ 119 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRER---DADGVFRGGPM 119 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeee---CCCCCEecChH
Confidence 345799999999999999998 999999976665 55655555554444433322 22223321 122235
Q ss_pred HHHHHHHcCCCceehhHHH
Q 038741 91 RAAVKTYLGGRKHKICGLV 109 (465)
Q Consensus 91 ~~l~~~~~G~~~~~~~~i~ 109 (465)
-.+-+...|||...+..++
T Consensus 120 yyi~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 120 YYIKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHHHhCccHHHHHHHHH
Confidence 5666667777655555555
No 75
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=95.86 E-value=3 Score=44.04 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=86.8
Q ss_pred cccccHHHHHHHHHhhhhhh-hhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHc
Q 038741 20 KRTGTVWTASAHIVTAIVGS-GVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYL 98 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~ 98 (465)
.|+.+++...+.+..+.+++ ..++.|-...+.|+..-... ............++.+-.|+. +..|..|.-++=|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~-~g~~~~~~~~~~~~~p~~rr~----~~~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL-MGWTGGYVLLALLLAPYLRKF----GKYTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH-HHHHHHHHHHHHHHHHHHHHC----CCccHHHHHHHHh
Confidence 56778899888888888865 45668876666775321111 111111112234444433432 5678999888888
Q ss_pred CCC-ceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHH
Q 038741 99 GGR-KHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWL 177 (465)
Q Consensus 99 G~~-~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 177 (465)
|++ .+.+..+...+.........+...+..++.+.. ++...-+++.++++..-+...-++...+.
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~i~~iYt~~GG~~aV~~T 171 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFIGMAIVFFYAVLGGMKGVTWT 171 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 865 577777666666666666666666666665542 22233344555555666666777777777
Q ss_pred HHHHHHH
Q 038741 178 SIIAAIM 184 (465)
Q Consensus 178 s~~~~~~ 184 (465)
-.+-.+.
T Consensus 172 D~iQ~ii 178 (552)
T TIGR03648 172 QVAQYIV 178 (552)
T ss_pred HHHHHHH
Confidence 6665443
No 76
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=95.70 E-value=3.2 Score=43.21 Aligned_cols=151 Identities=12% Similarity=0.072 Sum_probs=82.1
Q ss_pred cccccHHHHHHHHHhhhhhhhhh-hHHHHHHhhchHHHHHHHHHHHHHH-HHHHHHHHHhhcCC-CCCCccccHHHHHHH
Q 038741 20 KRTGTVWTASAHIVTAIVGSGVL-SLAWGIAQLGWITGVSTLLIFSSIS-LYSSGLLADCYRAP-LSGNRNHTYRAAVKT 96 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~i~l~~~~~l~-~~t~~lL~~~~~~~-~~~~~~~sy~~l~~~ 96 (465)
.|+.+++...+.+..+.+++..+ +.|-...+.|+-. . ...+...+. .....++..-.+.. +.+.+..|.+|.-++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 56677888888888777777664 4887777888642 1 111111111 11112221101100 011356799999999
Q ss_pred HcCCCceeh---hHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCc
Q 038741 97 YLGGRKHKI---CGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHK 173 (465)
Q Consensus 97 ~~G~~~~~~---~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 173 (465)
=||++.+.+ ..+...+....-+.+-+...+..++.+.+ ++....+++.+.+++.-....-++.
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GGl~a 182 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFIGGFLA 182 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999765443 33333333333334444445555554431 2223334555666666677778888
Q ss_pred hhHHHHHHHHHHH
Q 038741 174 LSWLSIIAAIMSV 186 (465)
Q Consensus 174 l~~~s~~~~~~~~ 186 (465)
..+.-.+-.+..+
T Consensus 183 V~~TD~iQ~~imi 195 (502)
T PRK15419 183 VSWTDTVQASLMI 195 (502)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777665443
No 77
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.27 E-value=3.5 Score=40.86 Aligned_cols=78 Identities=8% Similarity=0.081 Sum_probs=52.0
Q ss_pred ccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhc
Q 038741 88 HTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQ 167 (465)
Q Consensus 88 ~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 167 (465)
.+..|..++-+||+..++..+...+.......+-+...+..++.+. .++...+.++.++..+.+..
T Consensus 42 ~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------------g~~~~~~~~~~~~~~~~ll~ 107 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF--------------GIPLWIWVLLVAVIAILLLW 107 (358)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------CCCcHHHHHHHHHHHHHHHH
Confidence 3778888888999999988888888888888887777777766543 12224455555554444444
Q ss_pred --CCCcCchhHHHH
Q 038741 168 --IPNIHKLSWLSI 179 (465)
Q Consensus 168 --~~~l~~l~~~s~ 179 (465)
.++.|.+.....
T Consensus 108 ~~~~~y~~~E~~~~ 121 (358)
T PF01566_consen 108 LSSGGYRRLERILK 121 (358)
T ss_pred HHhccchHHHHHHH
Confidence 566666665543
No 78
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=95.09 E-value=4.2 Score=40.91 Aligned_cols=46 Identities=7% Similarity=-0.048 Sum_probs=40.7
Q ss_pred ccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 038741 88 HTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIR 133 (465)
Q Consensus 88 ~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~ 133 (465)
++..|..++.++++..++..+...+....++++-....+-.++.+.
T Consensus 77 ~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 77 KGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred CcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3678888888999999999999999999999999999988888664
No 79
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.08 E-value=1.1 Score=45.82 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=85.1
Q ss_pred CCCCCCccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHH
Q 038741 13 VDDDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRA 92 (465)
Q Consensus 13 ~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~ 92 (465)
.++|+.+.-+.+.+-.+-|=+.++-|+|-+-=|-.-++-||.+|.+++++-.....=-...+.-.. + .+++-.|.+|
T Consensus 42 ~~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~-S--vR~~G~Si~~ 118 (575)
T COG1966 42 RKNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLML-S--VRHGGKSIGE 118 (575)
T ss_pred eccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheee-e--eccCCccHHH
Confidence 346777766667888888999999999999999999999999999997755444333333332211 1 1124569999
Q ss_pred HHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHH
Q 038741 93 AVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISML 130 (465)
Q Consensus 93 l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~ 130 (465)
++++.+|++.+.+..+...+........+.....+.+.
T Consensus 119 ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 119 IAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988887777777766666655443
No 80
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=94.77 E-value=5.5 Score=40.61 Aligned_cols=206 Identities=13% Similarity=0.146 Sum_probs=103.3
Q ss_pred ccccHHHHHHHHcCCCceehhHH---HHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcc-cccCCchhHHHHHH
Q 038741 86 RNHTYRAAVKTYLGGRKHKICGL---VQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQC-KFSNNPFMIGIGIV 161 (465)
Q Consensus 86 ~~~sy~~l~~~~~G~~~~~~~~i---~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~i~~~i 161 (465)
...+|+...+..||-+|..+-.+ .....-+|.. --.++..++.++..+..+...+.... ...-.....+..++
T Consensus 101 ~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvq---ty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~i 177 (497)
T COG1953 101 YGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQ---TYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFI 177 (497)
T ss_pred cCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHH
Confidence 45699999999999877653332 2222222222 22345555555554322200001000 11111111111111
Q ss_pred ---HHHHhcCCCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCC--CccccccccCCCcccccchhhHHHHHHHHH
Q 038741 162 ---EMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGE--TTSLTGEEIGPNLTAADKTWGMFSAIGNIA 236 (465)
Q Consensus 162 ---~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (465)
+-.++..+.+++++.+...+...+... .....++...+.+.. -...++ .........|.+...+...+
T Consensus 178 fW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~---~~gl~Iw~~~~a~g~~~~~~~p~----~~~~~~~~~w~~~~~~~~~v 250 (497)
T COG1953 178 FWVLQLLVLFKGMESIRKFETWAGPLVYIA---MLGLAIWALVKAGGSSILGELPA----GTVSGSNSSWAFLAGIAAWV 250 (497)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhchHHHHH---HHHHHHHHHHhcCCcCccccCCC----CCCCcchhHHHHHHHHHHHH
Confidence 234456777889998888877766542 333444433333321 111111 01222334444544443332
Q ss_pred HHh-ccchhHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhh----hhhcccCCC--CCCccccCccCchH
Q 038741 237 FAC-AYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGC----FGYAALGNH--APGNLLAGFYKPFW 305 (465)
Q Consensus 237 faf-~~~~~i~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~----~gy~~fG~~--~~~~il~~~~~~~~ 305 (465)
=.| ...-|+|+..+.-|+| ++-.+--..+..+.+.+..++|+ .++..||+. .+.+|++++.+...
T Consensus 251 ~~~Atl~lN~~DFsRfa~s~----~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~ 322 (497)
T COG1953 251 GFWATLALNIPDFTRFAKSQ----KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFY 322 (497)
T ss_pred HHHHHHhcCCchhhcccCCh----hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchH
Confidence 222 4567889999998887 44444444555555555555444 567789998 45678888744443
No 81
>PRK15015 carbon starvation protein A; Provisional
Probab=94.64 E-value=0.62 Score=48.69 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=83.6
Q ss_pred CCCCccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHH
Q 038741 15 DDGRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAV 94 (465)
Q Consensus 15 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~ 94 (465)
+|+.+.-+.+.+--+-|=+.++-|+|-+-=|..-.+-||+++.+++++-.....--.....-.. + .+++-.|.+|++
T Consensus 75 ~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~-S--~R~~GrSig~ia 151 (701)
T PRK15015 75 NDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFV-S--TRRDGRSLGELV 151 (701)
T ss_pred CCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheee-e--ecCCCccHHHHH
Confidence 5666665556677788889999999999999999999999999997754443332222222111 1 112455999999
Q ss_pred HHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHH
Q 038741 95 KTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISML 130 (465)
Q Consensus 95 ~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~ 130 (465)
++..|++++.+..+..++.+......+.....+.+.
T Consensus 152 ~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 152 KEEMGPTAGVIALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999888888888777777766553
No 82
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.31 E-value=0.38 Score=48.41 Aligned_cols=133 Identities=14% Similarity=0.211 Sum_probs=86.8
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHH
Q 038741 44 LAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTI 123 (465)
Q Consensus 44 LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i 123 (465)
.-....++|.+.++.+.++-..+.+.+...-... .+..++..-..+++++.+|+.|..+..++..+.|+-.+++-..
T Consensus 220 ~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~---~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~ 296 (427)
T PF05525_consen 220 IKKYTIKAGLIAGILLALIYGGLAYLGATSSGSF---PDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLIS 296 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc---cCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666655555544444433221110 1112344456778999999999999999999999999999999
Q ss_pred HHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHHHHHHHHHHHHHHHhhhh
Q 038741 124 TAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGL 195 (465)
Q Consensus 124 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~ 195 (465)
.++|+.+++.+ ..+++.|.+++.++.+.++... ++ +..++..-+..+.|...++.+
T Consensus 297 a~a~yf~~~~~-------------kisY~~~v~i~~i~S~~ian~G-l~--~Ii~~s~PiL~~iYP~~IvLI 352 (427)
T PF05525_consen 297 ACAEYFSELFP-------------KISYKVWVIIFTIFSFIIANLG-LD--QIIKISVPILMFIYPVAIVLI 352 (427)
T ss_pred HHHHHHHHHhc-------------ccChHHHHHHHHHHHHHHHHhC-HH--HHHHHHHHHHHHHhHHHHHHH
Confidence 99999998864 3555777777777766666332 33 344444555666666655543
No 83
>PRK10484 putative transporter; Provisional
Probab=93.07 E-value=13 Score=38.92 Aligned_cols=89 Identities=8% Similarity=-0.038 Sum_probs=51.5
Q ss_pred cccccHHHHHHHHHhhhhhhhh-hhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHc
Q 038741 20 KRTGTVWTASAHIVTAIVGSGV-LSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYL 98 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~ 98 (465)
.|+.+++-..+.+..+.++++. ++.|-...+.|+.... ...............+..-.++ .+..|.+|.-++-|
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r----~~~~T~~e~l~~Ry 111 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMA-WEVTAAIALIILALIFLPRYLK----SGITTIPDFLEERY 111 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHH-HHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHhc
Confidence 5677788888888777776654 4577666667754211 1111111111222333322222 26779999999999
Q ss_pred CCCceehhHHHHHHH
Q 038741 99 GGRKHKICGLVQYVL 113 (465)
Q Consensus 99 G~~~~~~~~i~~~~~ 113 (465)
|++.+.+......+.
T Consensus 112 g~~~~~~~~~~~~i~ 126 (523)
T PRK10484 112 DKTTRRIVSILFLIG 126 (523)
T ss_pred CchhHHHHHHHHHHH
Confidence 998777665554433
No 84
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=92.79 E-value=1 Score=44.76 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=63.8
Q ss_pred ccccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHH
Q 038741 86 RNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFL 165 (465)
Q Consensus 86 ~~~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl 165 (465)
+..-..+++++.||+.|+.+..+...+.|++.+++.....+|+++++.+ ..+++.|.++..++.+.+
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------------k~~y~~~v~~~~l~s~~i 319 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------------KLSYKTWVIVFTLFSFIV 319 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHHH
Confidence 4456778899999999999999999999999999999999999887642 234455666666655554
Q ss_pred hcCCCcCchhHHHHHHHHHHHHHHHHhhh
Q 038741 166 SQIPNIHKLSWLSIIAAIMSVSYAGIGMG 194 (465)
Q Consensus 166 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 194 (465)
+.. .++++-- +..-+..+.|...++.
T Consensus 320 a~~-Gl~~Ii~--~~~PvL~~~YP~~i~l 345 (378)
T TIGR00796 320 ANL-GLTQIIS--ISIPVLMIIYPLAIVL 345 (378)
T ss_pred HHh-CHHHHHH--HHHHHHHHHHHHHHHH
Confidence 433 3444333 3333444445444433
No 85
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=92.70 E-value=12 Score=37.64 Aligned_cols=224 Identities=15% Similarity=0.108 Sum_probs=108.4
Q ss_pred cccHHHHHHHHHhhhhhhh-hhhHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHhh--cCCCCCCccccHHHHHHHH
Q 038741 22 TGTVWTASAHIVTAIVGSG-VLSLAWGIAQLGWITGVSTLLIFSSISLYSSG-LLADCY--RAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 22 ~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~-lL~~~~--~~~~~~~~~~sy~~l~~~~ 97 (465)
-.|-..-+....++.+|.| +.-.||-..+.|- |..++.....+-..+.- ++.|-. |..+. ....+|+++..
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGG--gAFll~yli~~l~~GiPlli~Ef~iGr~~~~-~~~~a~~~l~~-- 82 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGG--GAFLLPYLIFLLLVGIPLLLAEFAIGRRGRK-NAVGAFRKLAP-- 82 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCc--chHHHHHHHHHHHHhHHHHHHHHHhhhhcCC-ChhHHHHHhcc--
Confidence 3355667777789999988 5569999888773 33333333222223322 223321 11111 12346666654
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccC--CCCC----cccccCCchhHHHHHH-------HHH
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKR--GHGA----QCKFSNNPFMIGIGIV-------EMF 164 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~--~~~~----~~~~~~~~~~~i~~~i-------~~p 164 (465)
++....+.....+..+..+.-|.++.+-.+..+....-.... .++. ....++....+...++ ++-
T Consensus 83 --~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~ 160 (439)
T COG0733 83 --KKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVS 160 (439)
T ss_pred --CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 333444555556667777788888888877777665321111 0000 0011212211111111 111
Q ss_pred HhcCCCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccc--cCCCcccccchhhHHHHHHHHHHHh-cc
Q 038741 165 LSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEE--IGPNLTAADKTWGMFSAIGNIAFAC-AY 241 (465)
Q Consensus 165 l~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~faf-~~ 241 (465)
....|-+++.+..-+-.... +.+++.++. ...+. ..++.+ +.+|.+...++.-...++|...|+. -+
T Consensus 161 ~GV~~GIEk~~kimMP~Lfv------l~i~Lvi~~-~tLpG---A~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG 230 (439)
T COG0733 161 RGVKKGIEKANKIMMPLLFV------LFIILVIRA-VTLPG---AMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLG 230 (439)
T ss_pred HhHHhhHHHHHHHHHHHHHH------HHHHHHHHH-HcCcc---HHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHH
Confidence 22333344444443333321 222233332 22221 122222 1223333344445778999999998 45
Q ss_pred chhHHHHHHhhcCCCchhhHHHHHH
Q 038741 242 LQILIEIQDTLKSSPPENKVMKKAN 266 (465)
Q Consensus 242 ~~~i~~i~~~m~~~~~~~~~~~~~~ 266 (465)
-..+.+.-+.+++. ++..+.-
T Consensus 231 ~g~mitYsSYL~k~----~~l~~sa 251 (439)
T COG0733 231 FGIMITYSSYLSKK----SDLVSSA 251 (439)
T ss_pred HHHHHHHHhhcCcc----cchhhhH
Confidence 56667777777765 6666653
No 86
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=92.00 E-value=19 Score=38.22 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHhccchhHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 038741 227 GMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYA 286 (465)
Q Consensus 227 ~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~ 286 (465)
++-..+|++.=+-.+...--.+..|+|+| + +..+|-...+..+++++|.+..++--.
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~P--S-kSIP~GTl~ava~Tf~~Yvl~~flm~~ 351 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAP--S-KSIPKGTLSAVAFTFFVYVLVIFLMGC 351 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCc--c-ccCCccchHHHHHHHHHHHHHHHHhcc
Confidence 34445555444444445555678899998 3 568999999999999999998775433
No 87
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=89.28 E-value=6 Score=39.31 Aligned_cols=130 Identities=17% Similarity=0.268 Sum_probs=85.5
Q ss_pred HhhhhhhhhhhH---HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCceehhHHH
Q 038741 33 VTAIVGSGVLSL---AWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLV 109 (465)
Q Consensus 33 ~~~~iG~GiL~L---P~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~i~ 109 (465)
+|+.=.-|+-.= ......+|++.++.+.++...+.+.+..--.. .. ..+.+..=..+.+++.||+.|..+..++
T Consensus 208 v~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~-~~--~~~nG~~IL~~~s~~~fG~~G~~lL~~i 284 (431)
T COG1114 208 VNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSASA-AG--LAANGGQILSAYSQHLFGSYGSILLGLI 284 (431)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhh-cc--cccchHHHHHHHHHHHhchhhHHHHHHH
Confidence 444444444443 34445678887777766666666665111000 00 1112444567789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHHH
Q 038741 110 QYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSI 179 (465)
Q Consensus 110 ~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 179 (465)
..+.|+-.+++-+..++|+.+++.+ ..++..|..+++++.+.++.. .++++-..|.
T Consensus 285 v~lACLTTaiGLi~a~aefF~~~~p-------------~~SY~~~v~if~i~sflvan~-GL~~Ii~isv 340 (431)
T COG1114 285 VFLACLTTAVGLIVACAEFFSKLVP-------------KLSYKTWVIIFTLISFLVANL-GLEQIIKISV 340 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-------------cccHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 9999999999999999999998864 355566777777776666644 3444444443
No 88
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=88.86 E-value=29 Score=35.29 Aligned_cols=186 Identities=11% Similarity=0.064 Sum_probs=106.0
Q ss_pred ccccHHHH-HHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHH
Q 038741 86 RNHTYRAA-VKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMF 164 (465)
Q Consensus 86 ~~~sy~~l-~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p 164 (465)
.++|++|. +++.--++.|.+..+.-.+..+.-.++.++-.+..+..+++ .+...-+++.+++++.
T Consensus 102 GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--------------v~~~vgv~ig~ilm~~ 167 (529)
T COG4147 102 GKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--------------VPYHVGVVIGGILMMV 167 (529)
T ss_pred CCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------------CCceeehhhHhHHHHH
Confidence 67799996 55566667888888888877777788888888887776653 1222334555666666
Q ss_pred HhcCCCcCchhHHHHHHHHHHHH-HHHHhhhhhhhhhhccCCC--C-cccccc-ccCCCcccccchhhHHHHHHHHHHHh
Q 038741 165 LSQIPNIHKLSWLSIIAAIMSVS-YAGIGMGLAFTKAVLGHGE--T-TSLTGE-EIGPNLTAADKTWGMFSAIGNIAFAC 239 (465)
Q Consensus 165 l~~~~~l~~l~~~s~~~~~~~~~-~~~i~~~~~i~~~~~~~~~--~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf 239 (465)
-....-++...|.-..-.+..+. +.+.++.+.........+. . ...+.. +.....++.....+-.+.++...--.
T Consensus 168 Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm 247 (529)
T COG4147 168 YVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALM 247 (529)
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHH
Confidence 66778888888887665543332 2222222222111111000 0 000000 00001111222223444444443334
Q ss_pred ccchhHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 038741 240 AYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYA 286 (465)
Q Consensus 240 ~~~~~i~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~ 286 (465)
.+..-+|.+.-..-. .++-|+-+|.+..+..+...+|+..-..|+.
T Consensus 248 ~GTAgLPHil~RFfT-vp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 248 VGTAGLPHILMRFFT-VPDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred HccCCCCeEEEEEEe-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666766544432 2466899999999999999999998777765
No 89
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=88.45 E-value=4 Score=42.29 Aligned_cols=232 Identities=16% Similarity=0.179 Sum_probs=119.8
Q ss_pred cHHHHHHH-HHhhhhhhhh-hhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCccccHHHHHHHHcC
Q 038741 24 TVWTASAH-IVTAIVGSGV-LSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAP--LSGNRNHTYRAAVKTYLG 99 (465)
Q Consensus 24 s~~~a~~~-l~~~~iG~Gi-L~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~--~~~~~~~sy~~l~~~~~G 99 (465)
+|++.++. -+-.+.|.=+ |=++|...++|...+++++.....++..|..--..-.... +.| . .|- +..+.+|
T Consensus 31 g~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G-g--~yf-lis~slg 106 (643)
T KOG2083|consen 31 GWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG-G--VYF-LISRSLG 106 (643)
T ss_pred eeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC-c--EEE-EEEeccc
Confidence 45554433 2333444433 3489999999999999888877777766644332211111 111 1 111 2233467
Q ss_pred CCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHHH
Q 038741 100 GRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSI 179 (465)
Q Consensus 100 ~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 179 (465)
+..+--+.+...+.+.-.+.-|.+..++++.++++.+. .. .++. .-.+..++.+-+ ++-..+|.+-
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s--~~------~i~g--i~~vt~~ill~i----~~ag~~w~~k 172 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES--KE------MIDG--IGSVTVLILLAI----NVAGVEWEAK 172 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc--HH------Hhcc--hhHHHHHHHHHh----hhccchhHHH
Confidence 76666777777777778888899999999999987531 00 1111 111111111222 2333444444
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCCCcc--ccccc-------cCCCcccccchhhHHHHHHHHHHHhccchhHHHHHH
Q 038741 180 IAAIMSVSYAGIGMGLAFTKAVLGHGETTS--LTGEE-------IGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQD 250 (465)
Q Consensus 180 ~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 250 (465)
+-.+..++ ..+++.--+......+. +.+ ..++. ..++.++.. .+++.+++..=+..+...-..+..
T Consensus 173 ~q~~ll~i-l~iai~~f~~gs~~~~~-~~~~g~~~~~a~~~~~n~~~~~~~~~---tfF~vf~vfFpaatgilaG~nisG 247 (643)
T KOG2083|consen 173 LQIVLLLI-LLIAIADFLVGSFFSPN-EFSSGFFGYRADIFVENLNPDIDPGY---TFFSVFAVFFPAATGILAGANISG 247 (643)
T ss_pred HHHHHHHH-HHHHHHHhhhhhccChh-hhcccccccchhhcccCCCCCcCCCC---ceEeeeeeecchhhhhhccccccC
Confidence 44332221 01111111111111110 000 01110 001112111 344455555545556666667889
Q ss_pred hhcCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 038741 251 TLKSSPPENKVMKKANVIATLTATTLYMLCG 281 (465)
Q Consensus 251 ~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g 281 (465)
++++| ++..++....|....+.+|..+.
T Consensus 248 dL~~P---q~~IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 248 DLKDP---QKAIPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred CCCCc---hhhcccchhhhhhhhhhhhhhhh
Confidence 99998 36788889999999999996553
No 90
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=86.85 E-value=4 Score=41.28 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=79.6
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHH
Q 038741 46 WGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITA 125 (465)
Q Consensus 46 ~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~ 125 (465)
....++|.+.++.+.++-+.+.+.+..--.. ..+..++..=.....++.+|+.++.+..+.+.+.|+..+++-...+
T Consensus 226 k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~---~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~ 302 (439)
T PRK15433 226 RYTVWAGLMAGVGLTLLYLALFRLGSDSASL---VDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCAC 302 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---ccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666666655555555554311000 0001022333455688899999999999999999999999999999
Q ss_pred HhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHHHHHHHHHHHHHHHHhhh
Q 038741 126 AISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMG 194 (465)
Q Consensus 126 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 194 (465)
++.+++.. ..+++.+.++..++.++++... +++ ..++..-+..+.|...++.
T Consensus 303 a~~f~~~~--------------~isY~~~v~i~~l~S~~lSn~G-~~~--II~~s~PiL~~iYP~~IvL 354 (439)
T PRK15433 303 AEFFAQYV--------------PLSYRTLVFILGGFSMVVSNLG-LSQ--LIQISVPVLTAIYPPCIAL 354 (439)
T ss_pred HHHHHhhc--------------CCcHHHHHHHHHHHHHHHHHhH-HHH--HHHHHHHHHHHHhHHHHHH
Confidence 99988763 2344567777777777776442 332 3334444445555554443
No 91
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=81.54 E-value=56 Score=34.44 Aligned_cols=245 Identities=13% Similarity=0.109 Sum_probs=109.2
Q ss_pred cccccHHHHHHHHHhhhhhhh-hhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCccccHHHHHHHH
Q 038741 20 KRTGTVWTASAHIVTAIVGSG-VLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPL-SGNRNHTYRAAVKTY 97 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~-~~~~~~sy~~l~~~~ 97 (465)
.|+.-++.....++.+.+|.+ ++++|--..+.|.-.... .+.......++.... .++ -..+..+-.|.-++-
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~-----~~~~l~~~~~~~~~f-~Pvf~~~~v~~~~eYl~~R 117 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFF-----EWNALLSVLLLGWIF-IPVFYRLGVTTMYEYLEKR 117 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHH-----HHHHHHHHHhhheEE-EEEEEecCeeehhHHHHHH
Confidence 355567888888888888765 456887666665432211 112222222222211 110 012444556667777
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHH
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWL 177 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 177 (465)
||++.+.+..+...+..+--.-.++-.-+-.+++... ++......+..+++..-.....++..-+.
T Consensus 118 f~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------------~~~~l~~~~~~~ic~~YT~~GGlkaVi~T 183 (585)
T KOG2349|consen 118 FGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------------INLYLIVVILGLICVFYTALGGLKAVIWT 183 (585)
T ss_pred hcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------------cCceeehHHHHHHHHHHHHhcCeeEEEEh
Confidence 8877665555554444333322222222222222221 11111123333444444455556555555
Q ss_pred HHHHHHHHHHHHHHhhhhhh-h----hhhccCC-CCcccccc-ccCCCcccccchhhHH-HHHHHHHHHhccchhHHHHH
Q 038741 178 SIIAAIMSVSYAGIGMGLAF-T----KAVLGHG-ETTSLTGE-EIGPNLTAADKTWGMF-SAIGNIAFACAYLQILIEIQ 249 (465)
Q Consensus 178 s~~~~~~~~~~~~i~~~~~i-~----~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~faf~~~~~i~~i~ 249 (465)
=.+-++..+.-......... . ..+.... .++..... ++..++.-...+|..+ .....-.-.|+.+.+.. +
T Consensus 184 Dv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~V--Q 261 (585)
T KOG2349|consen 184 DVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIV--Q 261 (585)
T ss_pred hHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHH--h
Confidence 44444433321111111111 0 0111111 11111221 2233334444566543 33334444556666654 4
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 038741 250 DTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAAL 288 (465)
Q Consensus 250 ~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~f 288 (465)
+.|.-| +.++.++.+.......+++.......|...|
T Consensus 262 R~lsl~--slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~ 298 (585)
T KOG2349|consen 262 RYLSLP--SLKHAKPSLLLFGYGVLLIMFIMVFVGMIIY 298 (585)
T ss_pred HHhccc--cHHHhhhhhhhhhhHHHHHHHhhcccceeEe
Confidence 555443 4488888877666666666555555554433
No 92
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=81.05 E-value=76 Score=33.23 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=49.7
Q ss_pred cHHHHHHHHHhhhhhhh-hhhHHHHHHhhchHHHHH----HHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHc
Q 038741 24 TVWTASAHIVTAIVGSG-VLSLAWGIAQLGWITGVS----TLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYL 98 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i----~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~ 98 (465)
|..+-+...++..+|.| +.-.|+-..+-|-..-++ .+++++.=..+.=..+.+-.+. + ....|++++-..=
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~---~-~~~~~~~~~p~~~ 81 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRS---G-PIGAWKRLCPIFK 81 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT---T-SHHHS-HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---c-ccccccccccccc
Confidence 56677888899999998 777999988766322222 2222222222222233332221 1 2223444443321
Q ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 038741 99 GGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKS 135 (465)
Q Consensus 99 G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 135 (465)
| +.+...+..+..++-|.+..+..+..+...
T Consensus 82 g------iG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s 112 (523)
T PF00209_consen 82 G------IGYAMVLISFLIAIYYSVIVAWALYYFFQS 112 (523)
T ss_dssp T------HHHH---HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred c------cccccccccccccccccccccccccccccc
Confidence 1 344444445555666666666666555543
No 93
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=79.17 E-value=1e+02 Score=33.48 Aligned_cols=106 Identities=17% Similarity=0.185 Sum_probs=65.4
Q ss_pred ccccHHHHHHHHHhhhhhhhhhh-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCccccHHHHHHHHc
Q 038741 21 RTGTVWTASAHIVTAIVGSGVLS-LAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAP-LSGNRNHTYRAAVKTYL 98 (465)
Q Consensus 21 ~~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~-~~~~~~~sy~~l~~~~~ 98 (465)
|-|+......=-+..++|.=++- |-|...-+|...+..+.++|++.+..|+.-+...+..- +. .--+|-=+. +.+
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVp--aGGsYfmIS-RsL 189 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVP--AGGSYFMIS-RSL 189 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--CCCeeEEEe-ccc
Confidence 34444444444445555554433 88888899999999999999988888887776643221 11 111343332 346
Q ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHhhH
Q 038741 99 GGRKHKICGLVQYVLLVGMVVGYTITAAISM 129 (465)
Q Consensus 99 G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l 129 (465)
|+..+--+.+|.++-.--...-|++..-+.+
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~ 220 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIF 220 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHH
Confidence 7766667777777666666666777655543
No 94
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=71.70 E-value=1.2e+02 Score=30.57 Aligned_cols=96 Identities=13% Similarity=0.033 Sum_probs=53.6
Q ss_pred HHHHhhhhhhhhhhHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHcCCCceehhH
Q 038741 30 AHIVTAIVGSGVLSLAWGIAQLG--WITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYLGGRKHKICG 107 (465)
Q Consensus 30 ~~l~~~~iG~GiL~LP~af~~~G--~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~G~~~~~~~~ 107 (465)
+....+-+|+|-++ -+ .++| +....++.++.+.+..+..+.+.--.-. . ...+..|..++.++|+.++...
T Consensus 11 ~lva~a~idPG~i~-t~--~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~-v---Tg~~l~~~~r~~~~~~~~~~~~ 83 (390)
T TIGR01197 11 FLMSIAYIDPGNYS-TD--LQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGV-V---TGLDLAEVCREHYPKVPRITLW 83 (390)
T ss_pred HHHHHHhcCchHHH-HH--HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhee-e---cCCCHHHHHHHHCCCchHHHHH
Confidence 34444556666666 22 3333 3344445455555444444443321111 1 2347899999999998777666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Q 038741 108 LVQYVLLVGMVVGYTITAAISMLTI 132 (465)
Q Consensus 108 i~~~~~~~g~~i~y~i~~~~~l~~l 132 (465)
+...+...+...+-+...+..++.+
T Consensus 84 ~~~~l~ii~~~~~e~~G~a~al~ll 108 (390)
T TIGR01197 84 ILAELAIIATDMAEVIGTAIALNLL 108 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555666666666666666544
No 95
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=67.52 E-value=1.5e+02 Score=30.17 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=42.7
Q ss_pred cHHHHHHHHHhhhhhhhhhhHHHHHH-hhc--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 24 TVWTASAHIVTAIVGSGVLSLAWGIA-QLG--WITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
......+.++.-..|+|=|-.|-... ++| |+.+.+.+++.+..--.-..+-.. +. +. +++++++++
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~--~~-----~~-~~~~l~~~v 72 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVA--KS-----GG-GIEDLASRV 72 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh--hc-----CC-CHHHHhccc
Confidence 46777888999999999999997665 344 777777777666543332222111 11 22 777777665
No 96
>PLN00151 potassium transporter; Provisional
Probab=65.52 E-value=1.8e+02 Score=32.00 Aligned_cols=89 Identities=8% Similarity=-0.030 Sum_probs=41.1
Q ss_pred HHHHhcCCCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhcc
Q 038741 162 EMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAY 241 (465)
Q Consensus 162 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~ 241 (465)
+..|-.+++...=+.-..+|-++.+.+.. +.++.++..++.+|.-..--.+.|..+.... .-.+-+..+|-++.|.+|
T Consensus 282 Lv~LF~~Q~~GT~kVg~~FgPImllWFl~-i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~-~~~~gw~~LGgVvLciTG 359 (852)
T PLN00151 282 LVILFSVQRFGTSKVGFAFGPALALWFCS-LGGIGIYNLVKYDSSVFRAFNPVYIYYFFKR-NSTKAWSALGGCVLCATG 359 (852)
T ss_pred HHHHHHHHhccchhhhhhhccHHHHHHHH-HHHHHHHHHHhcCHHHHhhhCHHHHHHHHHh-CCCceEEEecceeeeecc
Confidence 33344444555545555566665554333 3345677776653321000000010000000 001233467777777777
Q ss_pred chhHHHHHHhhcCC
Q 038741 242 LQILIEIQDTLKSS 255 (465)
Q Consensus 242 ~~~i~~i~~~m~~~ 255 (465)
.+. ++++|-|=
T Consensus 360 aEA---LfADLGHF 370 (852)
T PLN00151 360 SEA---MFADLGYF 370 (852)
T ss_pred chh---hhcccCCC
Confidence 775 46777664
No 97
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=61.22 E-value=1.9e+02 Score=29.27 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=52.6
Q ss_pred CCCCCccccccHHHHHHHHHhhhhhhhhhh-HHHHHHhhchHHHHHHHHHHHHHHH---HHHHHHHHhhcCC-CCCCccc
Q 038741 14 DDDGRSKRTGTVWTASAHIVTAIVGSGVLS-LAWGIAQLGWITGVSTLLIFSSISL---YSSGLLADCYRAP-LSGNRNH 88 (465)
Q Consensus 14 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~-LP~af~~~G~~~g~i~l~~~~~l~~---~t~~lL~~~~~~~-~~~~~~~ 88 (465)
++++++++..|.+|+...-+.+.+|+|=++ ..-|..-.| ..+++++-+.+++.. |+-..|..-+|.. ++++-.-
T Consensus 10 ~~~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~G 88 (416)
T PF01235_consen 10 FKKKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRG 88 (416)
T ss_pred cCCCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEee
Confidence 344555667899999999999999999776 888886544 456666665555443 3333444334432 1111111
Q ss_pred cHHHHHHHHcCCCc
Q 038741 89 TYRAAVKTYLGGRK 102 (465)
Q Consensus 89 sy~~l~~~~~G~~~ 102 (465)
.-.-..++.+|+|+
T Consensus 89 GP~yyi~~gl~~k~ 102 (416)
T PF01235_consen 89 GPMYYIEKGLGSKW 102 (416)
T ss_pred cHHHHHHHHhccch
Confidence 12234566676653
No 98
>PHA02764 hypothetical protein; Provisional
Probab=57.90 E-value=50 Score=31.87 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=49.2
Q ss_pred CCCccccccHHHHHH-HHHhhhhhhhhhhHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCccccHH
Q 038741 16 DGRSKRTGTVWTASA-HIVTAIVGSGVLSLAWGIAQL--GWITGVSTLLIFSSISLYSSGLLADCY-RAPLSGNRNHTYR 91 (465)
Q Consensus 16 ~~~~~~~~s~~~a~~-~l~~~~iG~GiL~LP~af~~~--G~~~g~i~l~~~~~l~~~t~~lL~~~~-~~~~~~~~~~sy~ 91 (465)
++---|..|.+.+++ |+.+...|.++ +.|+-++.. |.. ....-++.++++......-.+.. +.+++| +.+.|
T Consensus 7 SSGLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAG-GdYVY- 82 (399)
T PHA02764 7 SSGIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNG-GDYAY- 82 (399)
T ss_pred cCCceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ceEEE-
Confidence 333456668888887 66666666654 556644433 221 11122222233332222222211 223333 33444
Q ss_pred HHHHHHcCCCceehhHHHHHHHHHH
Q 038741 92 AAVKTYLGGRKHKICGLVQYVLLVG 116 (465)
Q Consensus 92 ~l~~~~~G~~~~~~~~i~~~~~~~g 116 (465)
.++++|++.+.+..+..++....
T Consensus 83 --ISRAFGP~~GFLvG~a~WLtl~~ 105 (399)
T PHA02764 83 --IRTAFSSKFYTIFGISLWLTYVL 105 (399)
T ss_pred --hHHhhCccHHHHHHHHHHHHHHh
Confidence 77889999988888877755443
No 99
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=56.26 E-value=2.1e+02 Score=28.12 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=36.8
Q ss_pred HHhhcCCC-chhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCc
Q 038741 249 QDTLKSSP-PENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGF 300 (465)
Q Consensus 249 ~~~m~~~~-~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~ 300 (465)
.++..+++ .+...-.+++..+...+.-.-..+...||.......++++...+
T Consensus 32 ~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l 84 (340)
T PF12794_consen 32 AKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVAL 84 (340)
T ss_pred HHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 33444432 23455678899999999999999999999988766666655544
No 100
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.15 E-value=24 Score=25.46 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcccccccccC
Q 038741 431 LLNLVCFLAALG-AACSSIHGLYKALHTYKPLKVT 464 (465)
Q Consensus 431 ~~~~~~~~~~~~-g~~~si~~ii~~~~~~~~f~~~ 464 (465)
++++++++.|++ |++-|-+..-+.+++.+|-.++
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~NPpine~ 42 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDNPPINEE 42 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHH
Confidence 667778888886 5788999999999998887654
No 101
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=51.23 E-value=75 Score=27.18 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhccccH
Q 038741 260 KVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPV 329 (465)
Q Consensus 260 ~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 329 (465)
|+.+|.+....-....+..++|+.....+-++ .++.+-++-..|+-....+++.+|.+..+...+.|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~--~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNA--KNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 66778888888888888888888766665544 233333333568888888899999999988877775
No 102
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=49.69 E-value=1.5e+02 Score=25.99 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=30.2
Q ss_pred hhhhhHHHhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038741 399 LAYWPLTVYFPLEMYIAQKNIKRGTSWWFGLQLLNLVCFLAALGAACSSIHGLY 452 (465)
Q Consensus 399 ~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~si~~ii 452 (465)
+-.....+.+|+-+-++..+......+.-++.-+.+++++-.+..-.+.+...+
T Consensus 61 ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~v 114 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKV 114 (186)
T ss_pred HHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556788889998877777644333222223344456666655544444444443
No 103
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=48.54 E-value=3.1e+02 Score=27.95 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=31.7
Q ss_pred cHHHHHHHHHhhhhhhhhhhHHHHHH-hhc--hHHHHHHHHHHHH
Q 038741 24 TVWTASAHIVTAIVGSGVLSLAWGIA-QLG--WITGVSTLLIFSS 65 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~ 65 (465)
..+...+.++.-..|+|=|=.|-... ++| |..+.+.+++.+.
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~V 53 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAV 53 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHH
Confidence 57778899999999999999997765 444 6666666655444
No 104
>PLN02351 cytochromes b561 family protein
Probab=47.71 E-value=2.3e+02 Score=26.21 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=54.1
Q ss_pred HHHHHHHHhccchhHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCcc-CchHHHHH
Q 038741 231 AIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFY-KPFWLVDM 309 (465)
Q Consensus 231 ~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~-~~~~~~~~ 309 (465)
.+.++.|.|..-+.+. +++.++.+ ++.+|.+....-...++..++|+.. .|-+ +++...|+. -..|+-..
T Consensus 56 ~lMviGfi~L~geAIL-vYR~~~~~----~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~--~~~~i~nlySLHSWlGl~ 126 (242)
T PLN02351 56 LLMVIGFILISGEAIL-VHRWLPGS----RKTKKSVHLWLQGLALASGVFGIWT--KFHG--QDGIVANFYSLHSWMGLI 126 (242)
T ss_pred HHHHHHHHHHHHHHHH-Hhhccccc----chHHHHHHHHHHHHHHHHHHHHHHH--HHhc--ccCCccchhHHHHHHHHH
Confidence 3444444543333333 34556654 5568888888888888888888877 4432 223333332 25688877
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 038741 310 ANSFIVVHLLGAYQVMAQP 328 (465)
Q Consensus 310 ~~~~~~~~~~~s~pl~~~p 328 (465)
...++.+|-+..+.....|
T Consensus 127 tv~Lf~lQwv~Gf~~F~~P 145 (242)
T PLN02351 127 CVSLFGAQWLTGFMSFWHR 145 (242)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 8888888888887655444
No 105
>PLN02680 carbon-monoxide oxygenase
Probab=47.56 E-value=90 Score=28.71 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhcccc
Q 038741 260 KVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQP 328 (465)
Q Consensus 260 ~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p 328 (465)
|+.+|.+....-....+..++|+.....+-+ +.++-+-++-..|+-....+++.+|.+..+.....|
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn--~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWAALKFHN--EKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6778888888888888888899966554444 334433333467888888888888888888665555
No 106
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=44.89 E-value=1e+02 Score=27.10 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhcccc
Q 038741 260 KVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQP 328 (465)
Q Consensus 260 ~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p 328 (465)
|+..|.+....-...++..++|+.....+-++ ..+-+.++-..|+-.....++.+|-+..+.....|
T Consensus 67 k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~--~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 67 KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNV--HHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66778888888888888999999776666554 34444443467888788888888888888666555
No 107
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=44.20 E-value=4e+02 Score=27.92 Aligned_cols=48 Identities=8% Similarity=-0.007 Sum_probs=40.9
Q ss_pred ccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 038741 88 HTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKS 135 (465)
Q Consensus 88 ~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 135 (465)
.-..++-...+||++.........+..+..+++-++..+.......++
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 356777888899999999999999999999999999998887776654
No 108
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=44.19 E-value=99 Score=26.14 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhccccH
Q 038741 260 KVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPV 329 (465)
Q Consensus 260 ~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 329 (465)
++.+|.+....-....+..++|+.....+-++. ++-+-++-..|+-....+++.++.+..+.....|.
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 667778888888888888889986555554432 33333333668877888888888888876555554
No 109
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=43.93 E-value=24 Score=23.14 Aligned_cols=31 Identities=29% Similarity=0.271 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccCCCC
Q 038741 262 MKKANVIATLTATTLYMLCGCFGYAALGNHA 292 (465)
Q Consensus 262 ~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~ 292 (465)
+..+...++.+.+++..+.|..-|.+||+-.
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 3446677778888888888888899999864
No 110
>PLN02810 carbon-monoxide oxygenase
Probab=40.87 E-value=1.5e+02 Score=27.20 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhccchhHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHH
Q 038741 228 MFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLV 307 (465)
Q Consensus 228 ~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~ 307 (465)
.-..+.++.|.|..-+.+... +..+.+ ++.+|.+....-...++..++|+.....|-++ ..+-+-++-..|+-
T Consensus 49 ~HPvlMv~Gfi~l~geAIL~Y-r~~~~~----k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~--~~i~nlySLHSWlG 121 (231)
T PLN02810 49 LHPVLMLIGLIIIGGEAIMSY-KSLPLK----KEVKKLIHLVLHAIALILGIFGICAAFKNHNE--SGIANLYSLHSWLG 121 (231)
T ss_pred ehHHHHHHHHHHHhhHHHHHh-hccccc----cchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCCceeeHHHHHH
Confidence 333444444555444444333 444444 67788888888888888899999776666553 34433333367888
Q ss_pred HHHHHHHHHHHHHhhhhcccc
Q 038741 308 DMANSFIVVHLLGAYQVMAQP 328 (465)
Q Consensus 308 ~~~~~~~~~~~~~s~pl~~~p 328 (465)
.....++.+|-+..+-..++|
T Consensus 122 l~tv~Lf~lQw~~Gf~~Fl~P 142 (231)
T PLN02810 122 IGIISLYGIQWIYGFIVFFFP 142 (231)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 778888888888887555554
No 111
>CHL00020 psbN photosystem II protein N
Probab=39.59 E-value=24 Score=22.87 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCC
Q 038741 265 ANVIATLTATTLYMLCGCFGYAALGNHA 292 (465)
Q Consensus 265 ~~~~a~~~~~i~Y~~~g~~gy~~fG~~~ 292 (465)
+...++.+.+++..+.|..-|.+||+..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4566777778888888888888999854
No 112
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=39.00 E-value=70 Score=28.49 Aligned_cols=66 Identities=17% Similarity=0.047 Sum_probs=43.8
Q ss_pred hHHHHHHHhhhhhhhHHHhhhHHHHHHHhccCCC----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038741 389 FNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKRG----------TSWWFGLQLLNLVCFLAALGAACSSIHGLYKA 454 (465)
Q Consensus 389 ~~~i~~l~Ga~~~~~l~filP~l~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~~si~~ii~~ 454 (465)
++...=+.|++.+.-+..++|+.+.+...|++.. +.+.....++..++++-++++.+-|..++.+.
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~G 118 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSEG 118 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 4455556788888899999999999999765321 22222334555666666666777777777654
No 113
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=37.83 E-value=32 Score=24.51 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=23.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhcccccccccC
Q 038741 433 NLVCFLAAL-GAACSSIHGLYKALHTYKPLKVT 464 (465)
Q Consensus 433 ~~~~~~~~~-~g~~~si~~ii~~~~~~~~f~~~ 464 (465)
++++++.|+ .|.+.+-+..-+.+++.+|-.++
T Consensus 3 iilali~G~~~Gff~ar~~~~k~l~~NPpine~ 35 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYMEKQLKENPPINEK 35 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 455566665 57888899999999988886654
No 114
>TIGR00909 2A0306 amino acid transporter.
Probab=37.02 E-value=2.8e+02 Score=27.88 Aligned_cols=47 Identities=4% Similarity=-0.048 Sum_probs=40.8
Q ss_pred cHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 038741 89 TYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKS 135 (465)
Q Consensus 89 sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 135 (465)
...++.++..|+++..++.+...+..++...+.....+..+..+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46677788888889999999999999999999999999998887764
No 115
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=36.09 E-value=37 Score=22.05 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCC
Q 038741 265 ANVIATLTATTLYMLCGCFGYAALGNHA 292 (465)
Q Consensus 265 ~~~~a~~~~~i~Y~~~g~~gy~~fG~~~ 292 (465)
+...+..+.+++-.+.|...|.+||+..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 3456677777777888888899999754
No 116
>PLN00150 potassium ion transporter family protein; Provisional
Probab=35.71 E-value=6.4e+02 Score=27.82 Aligned_cols=90 Identities=7% Similarity=-0.046 Sum_probs=43.3
Q ss_pred HHHHHhcCCCcCchhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhc
Q 038741 161 VEMFLSQIPNIHKLSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACA 240 (465)
Q Consensus 161 i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~ 240 (465)
++..|-.+++...=+.-..+|-++.+.+.. +.+..++..++.+|.-..--.+.|..+.. ...-.+-+..+|-++.|.+
T Consensus 221 ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~-i~~iGiyni~~~~p~Vl~AlnP~y~~~ff-~~~~~~g~~~LG~V~L~iT 298 (779)
T PLN00150 221 ILVILFSLQRFGTHKVSFLFAPIFLCWFFS-LALIGCYNIIKWDKSVFLAFNPLYIVSFF-IRNGRQGWESLGGIVLCMT 298 (779)
T ss_pred HHHHHHHHHhccchhhhhhhccHHHHHHHH-HHHHHHHHHHhcCHHHHhhcCHHHHHHHH-HhCCCceEEEecceeeeec
Confidence 334444455555555556666665554433 33456777766533211000111110000 0011133456777777887
Q ss_pred cchhHHHHHHhhcCC
Q 038741 241 YLQILIEIQDTLKSS 255 (465)
Q Consensus 241 ~~~~i~~i~~~m~~~ 255 (465)
|.+. ++++|-|=
T Consensus 299 GaEA---LyADlGHF 310 (779)
T PLN00150 299 GTEA---MFADLGHF 310 (779)
T ss_pred chhh---hhccccCC
Confidence 7775 46777764
No 117
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=34.61 E-value=2.9e+02 Score=23.50 Aligned_cols=38 Identities=13% Similarity=0.058 Sum_probs=22.8
Q ss_pred HHHHHHccchHHHHHHHhh--hhhhhHHHhhhHHHHHHHh
Q 038741 380 TLLSMALPFFNEVLGLLGA--LAYWPLTVYFPLEMYIAQK 417 (465)
Q Consensus 380 ~~ia~~vp~~~~i~~l~Ga--~~~~~l~filP~l~~l~~~ 417 (465)
++-..+-.|.++..++.+. +....+.-++|+++.++.+
T Consensus 48 mi~nv~eTn~~Ea~ells~~~~~~~l~~~vlP~~~l~~~~ 87 (156)
T PF08019_consen 48 MIQNVFETNTAEASELLSWKLILWLLLLGVLPALLLWRVR 87 (156)
T ss_pred HHHHHHHcCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444566666666654 3444555668888877775
No 118
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=31.73 E-value=4.3e+02 Score=24.65 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=27.8
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Q 038741 246 IEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGN 290 (465)
Q Consensus 246 ~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~ 290 (465)
..-.+.+++| ++++.+.+...+..++|...-..++..+++
T Consensus 15 ~~g~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~ 54 (251)
T PRK04949 15 IQGWKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDA 54 (251)
T ss_pred HHHHHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667776 688899988888888888775555444443
No 119
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=30.61 E-value=2.1e+02 Score=25.96 Aligned_cols=69 Identities=14% Similarity=0.049 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhcccc
Q 038741 260 KVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQP 328 (465)
Q Consensus 260 ~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p 328 (465)
|+..|.+....-....+..++|+.....+-++..+.+-+-++-..|+-....+++.++.+..+...+.|
T Consensus 54 k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P 122 (214)
T cd08764 54 KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFP 122 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677888888888888888876655555544445544443467888788888888888888665555
No 120
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=29.56 E-value=3.3e+02 Score=22.96 Aligned_cols=68 Identities=10% Similarity=-0.004 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHHHHHHHHHHHHHHHHhhhhccccH
Q 038741 260 KVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWLVDMANSFIVVHLLGAYQVMAQPV 329 (465)
Q Consensus 260 ~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 329 (465)
++..|.+....-....+-.++|+.....+-++ .++-+-++-..|+-....+++.++.+..+....+|.
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~--~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQA--NGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55667788888888888888888776555443 233222323568887888889999999987776664
No 121
>PRK12768 CysZ-like protein; Reviewed
Probab=28.70 E-value=4.8e+02 Score=24.20 Aligned_cols=28 Identities=14% Similarity=-0.081 Sum_probs=20.9
Q ss_pred HHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhh
Q 038741 249 QDTLKSSPPENKVMKKANVIATLTATTLYMLCG 281 (465)
Q Consensus 249 ~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g 281 (465)
.+++.+| ++++++..+...+..++...+
T Consensus 9 ~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 9 LARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4567775 688888888888877777754
No 122
>PRK09950 putative transporter; Provisional
Probab=28.64 E-value=7e+02 Score=26.07 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=57.1
Q ss_pred cHHHHHHHHHhhhhhhhhhhHH----HH-HHh--hc--------hHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCCCC
Q 038741 24 TVWTASAHIVTAIVGSGVLSLA----WG-IAQ--LG--------WITGVSTLLIFSSISLYSSGLLA---DCYRAPLSGN 85 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~GiL~LP----~a-f~~--~G--------~~~g~i~l~~~~~l~~~t~~lL~---~~~~~~~~~~ 85 (465)
|.++-+..++.+-+|+|++.-. .. +.. .| .-.+.....+=+.+..++.+.+. -++....++.
T Consensus 85 S~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~~rk~ 164 (506)
T PRK09950 85 STLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHVRKN 164 (506)
T ss_pred cchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5667777888899999987632 11 110 11 11122222233333333333333 2220111123
Q ss_pred ccccHHHHHHHHcCCC----ceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 038741 86 RNHTYRAAVKTYLGGR----KHKICGLVQYVLLVGMVVGYTITAAISMLTIRK 134 (465)
Q Consensus 86 ~~~sy~~l~~~~~G~~----~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 134 (465)
+..+.++..+-.+|++ .+.++|+.-.+...+....-+=+....+..-+.
T Consensus 165 ~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~ 217 (506)
T PRK09950 165 KGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLS 217 (506)
T ss_pred CCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5567888888888864 345777766666555555444444454554443
No 123
>PRK01844 hypothetical protein; Provisional
Probab=27.25 E-value=1.1e+02 Score=22.43 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcccccccccC
Q 038741 431 LLNLVCFLAALG-AACSSIHGLYKALHTYKPLKVT 464 (465)
Q Consensus 431 ~~~~~~~~~~~~-g~~~si~~ii~~~~~~~~f~~~ 464 (465)
++.+++++.|++ |.+.+-+..-+.+++.+|-.++
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~ 42 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQ 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 345566666665 6778888888889998887654
No 124
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=26.84 E-value=1.3e+02 Score=26.12 Aligned_cols=39 Identities=15% Similarity=0.351 Sum_probs=22.7
Q ss_pred hhhhhhhhhHHHHHH--hhchHHHHHHHHHHHHHHHHHHHH
Q 038741 35 AIVGSGVLSLAWGIA--QLGWITGVSTLLIFSSISLYSSGL 73 (465)
Q Consensus 35 ~~iG~GiL~LP~af~--~~G~~~g~i~l~~~~~l~~~t~~l 73 (465)
+-+|.++|..|++.. +-++..-.+..+..++++..++.+
T Consensus 47 T~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAll 87 (173)
T PF11085_consen 47 TEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALL 87 (173)
T ss_pred cccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 568899999998865 333433344444444555444433
No 125
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=26.45 E-value=7.4e+02 Score=25.69 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=17.3
Q ss_pred cHHHHHHHHHhhhhhhhhhhHH
Q 038741 24 TVWTASAHIVTAIVGSGVLSLA 45 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~GiL~LP 45 (465)
|.++-...++.+-+|+|++.-.
T Consensus 76 S~~sW~aMlf~aGig~Givfwg 97 (485)
T PF02028_consen 76 STFSWFAMLFCAGIGAGIVFWG 97 (485)
T ss_dssp -HHHHHHHHHHHCSSHHHHHHH
T ss_pred CchHHHHHHHHHHhcchhhcch
Confidence 5777788889999999998643
No 126
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=25.95 E-value=7e+02 Score=25.25 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=38.7
Q ss_pred cHHHHHHHHHhhhhhhhhhhHHHHHH-hhc--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 24 TVWTASAHIVTAIVGSGVLSLAWGIA-QLG--WITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~GiL~LP~af~-~~G--~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
+.+..-+.++.-..|+|=+-.|-... ++| ++.+...+++-+. +.-+|.--.-. . ...+++++++++
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgV----glPlLgiIa~a-~---~g~~~~~l~~~i 74 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGV----GLPLLGIIAVA-L---YGGGVESLATRI 74 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHh----hHHHHHHHHhh-c---cCCCHHHHhhhc
Confidence 46777888899999999998886654 344 4555555544433 33333221111 0 111778887765
No 127
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=24.74 E-value=5.6e+02 Score=23.69 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhccchhHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCccccCccCchHH
Q 038741 227 GMFSAIGNIAFACAYLQILIEIQDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGNLLAGFYKPFWL 306 (465)
Q Consensus 227 ~~~~~~~~~~faf~~~~~i~~i~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~ 306 (465)
|.-..+.++.|-|..-+.+ -+++.-+. ++|+..|.+....=.+.+...++|+.....+-+... +-+-++-..|.
T Consensus 56 nlHP~lMviGfI~l~GeAi-L~YR~~r~---~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~--i~NfySLHSWl 129 (245)
T KOG1619|consen 56 NLHPVLMVIGFIYLQGEAI-LIYRVFRY---TSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG--IANFYSLHSWL 129 (245)
T ss_pred CcchHHHHHHHHHhcccee-eeeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--ccceeeHHHHH
Confidence 4444555555666333333 34444332 448999999999999999999999988877666543 32323336788
Q ss_pred HHHHHHHHHHHHHHhhhhccc
Q 038741 307 VDMANSFIVVHLLGAYQVMAQ 327 (465)
Q Consensus 307 ~~~~~~~~~~~~~~s~pl~~~ 327 (465)
-..+..++.+|-...|--.++
T Consensus 130 Gl~~v~ly~~Q~v~GF~tfl~ 150 (245)
T KOG1619|consen 130 GLCVVILYSLQWVFGFFTFLF 150 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 878888888888888754433
No 128
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.09 E-value=1.6e+02 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038741 426 WFGLQLLNLVCFLAALGAACSSIH 449 (465)
Q Consensus 426 ~~~~~~~~~~~~~~~~~g~~~si~ 449 (465)
+..|+.+..+++++++.|.++..+
T Consensus 41 k~~H~~L~~la~~~~~~Gl~av~~ 64 (143)
T cd08763 41 KILHGLLHIMALVISLVGLVAVFD 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888777653
No 129
>PRK00523 hypothetical protein; Provisional
Probab=23.48 E-value=1.4e+02 Score=21.85 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=23.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhcccccccccC
Q 038741 432 LNLVCFLAALG-AACSSIHGLYKALHTYKPLKVT 464 (465)
Q Consensus 432 ~~~~~~~~~~~-g~~~si~~ii~~~~~~~~f~~~ 464 (465)
+.+++++.|++ |.+.+-+..-+.+++.+|-.++
T Consensus 10 l~i~~li~G~~~Gffiark~~~k~l~~NPpine~ 43 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKKQIRENPPITEN 43 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCHH
Confidence 34455555554 6778888888889988887654
No 130
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=21.63 E-value=3.1e+02 Score=28.15 Aligned_cols=47 Identities=9% Similarity=-0.035 Sum_probs=41.0
Q ss_pred cHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 038741 89 TYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKS 135 (465)
Q Consensus 89 sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 135 (465)
.+.+..+...+++...++++......+++..+.+...++.+..+.++
T Consensus 275 p~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~d 321 (478)
T PF00324_consen 275 PFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARD 321 (478)
T ss_pred chhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhh
Confidence 46777888888999999999999999999999999999888887764
No 131
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=21.04 E-value=3e+02 Score=21.00 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=21.7
Q ss_pred HHHhhhhhhhHHHhhhHHHHHHHhccCC
Q 038741 394 GLLGALAYWPLTVYFPLEMYIAQKNIKR 421 (465)
Q Consensus 394 ~l~Ga~~~~~l~filP~l~~l~~~~~~~ 421 (465)
++.+...+..++++.|+..-++.-+.++
T Consensus 2 ~~~~~~l~~~i~~~yP~~~s~kal~~~~ 29 (94)
T PF03134_consen 2 GFIARLLCNLIGILYPAYKSFKALKSKD 29 (94)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4566777889999999998888865444
No 132
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=20.57 E-value=4.5e+02 Score=21.46 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=35.7
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLAD 76 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~ 76 (465)
.+||+-..|-.+..++ .-+|.++++..- +.|-+.|....++.-....|+..+-.+
T Consensus 30 AnERTfl~wl~~~vll-g~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~k 84 (126)
T COG5264 30 ANERTFLSWLSVTVLL-GGLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLK 84 (126)
T ss_pred echHHHHHHHHHHHHH-HHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566654444444444 456777777666 788887877777777777777666554
No 133
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=20.06 E-value=5.1e+02 Score=26.25 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=55.4
Q ss_pred HHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCch
Q 038741 95 KTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKL 174 (465)
Q Consensus 95 ~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 174 (465)
+..+|.++.+++.+++.+.-+...+++.....+++..+.++. . .. ..+-+++ ++..++....+++.+
T Consensus 300 ~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~~-------~--~~---~~~ri~~-i~~~~~G~~~~~~~v 366 (416)
T PF01235_consen 300 STVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGGK-------K--AI---WIYRILF-IAMVFIGAVIDLDLV 366 (416)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------e--EE---Eeeeehh-hhhhhhhhcccchhH
Confidence 334677899999999999999999999999999988876210 0 01 1111222 223344445567776
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 038741 175 SWLSIIAAIMSVSYAGIGMG 194 (465)
Q Consensus 175 ~~~s~~~~~~~~~~~~i~~~ 194 (465)
.-++=+++.+.....++.+.
T Consensus 367 W~~~Di~~~lmai~Nlial~ 386 (416)
T PF01235_consen 367 WDLADIANGLMAIPNLIALL 386 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666655554454443
No 134
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=20.03 E-value=3.9e+02 Score=27.04 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHcc-chHHHHHHHhhhhhhhHHHhhhHHHHHHHhccCC--C-chhHHHHHHHHHHHHHHHHHH
Q 038741 368 RLTWRTIFVVMATLLSMALP-FFNEVLGLLGALAYWPLTVYFPLEMYIAQKNIKR--G-TSWWFGLQLLNLVCFLAALGA 443 (465)
Q Consensus 368 ~~~~~~~~~~~~~~ia~~vp-~~~~i~~l~Ga~~~~~l~filP~l~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~g 443 (465)
|..........+.+.++..| .+....+..|++..+..+-+.|.+++++-++..+ . .+++........+.++.|+..
T Consensus 324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~ 403 (415)
T COG0814 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILV 403 (415)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHH
Confidence 44555556667777777777 7888889899899899999999999999863332 2 222222223455555555555
Q ss_pred HHHHHH
Q 038741 444 ACSSIH 449 (465)
Q Consensus 444 ~~~si~ 449 (465)
....+.
T Consensus 404 ~~~~~~ 409 (415)
T COG0814 404 ILSPFL 409 (415)
T ss_pred HHHHHH
Confidence 544444
No 135
>PRK11281 hypothetical protein; Provisional
Probab=20.03 E-value=1.4e+03 Score=26.74 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccCC
Q 038741 260 KVMKKANVIATLTATTLYMLCGCFGYAALGN 290 (465)
Q Consensus 260 ~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~ 290 (465)
.+-.+++..+.+.+.-..+.+...||+.+..
T Consensus 540 ~~T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 540 LHTPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556778888888877888888888887653
Done!