Query 038741
Match_columns 465
No_of_seqs 121 out of 1311
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 03:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038741.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038741hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 6.5E-15 2.2E-19 149.1 29.3 363 18-421 5-380 (445)
2 3gia_A Uncharacterized protein 99.5 2.2E-11 7.4E-16 123.1 31.6 354 19-421 4-370 (444)
3 4djk_A Probable glutamate/gamm 99.4 3.4E-10 1.2E-14 116.4 31.6 249 17-291 7-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.6 1.1E-05 3.9E-10 82.1 26.5 242 18-284 22-274 (501)
5 3dh4_A Sodium/glucose cotransp 97.7 0.069 2.4E-06 54.5 31.5 148 20-186 19-168 (530)
6 2xq2_A Sodium/glucose cotransp 97.3 0.24 8.3E-06 51.2 28.5 148 20-186 48-197 (593)
7 2a65_A Leutaa, Na(+):neurotran 92.8 8.8 0.0003 38.6 32.2 108 24-136 10-123 (519)
8 3l1l_A Arginine/agmatine antip 24.6 4.5E+02 0.015 24.8 13.9 49 87-135 259-307 (445)
9 3gia_A Uncharacterized protein 21.0 5.2E+02 0.018 24.4 10.4 47 89-135 259-305 (444)
10 1afo_A Glycophorin A; integral 12.0 2.7E+02 0.0093 16.8 4.0 23 431-453 13-35 (40)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.71 E-value=6.5e-15 Score=149.13 Aligned_cols=363 Identities=11% Similarity=-0.007 Sum_probs=202.9
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
+++|+.+.++.....+++++|+|++.+|...++.|.. +++..++.++........+.|..... ++.-+..+..++.
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~---p~~Gg~y~~~~~~ 80 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD---PSPGGSYAYARRC 80 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC---CCTTTHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC---CCCCCchhhHHhH
Confidence 3456788999999999999999999999998888864 67777777787777777777754332 2444677788999
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHH-HHHHHHhcCCCcCchhH
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIG-IVEMFLSQIPNIHKLSW 176 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~ 176 (465)
+|++.+++..+..++.......++....++++....+. ..+ .+ ..+.+... ++++-....+..|....
T Consensus 81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~--~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----LKD----PW--VLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG-----GGS----HH--HHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc-----ccc----cH--HHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 99999999999998887777777777766665433221 000 11 11111111 11122223334455555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhcCCC
Q 038741 177 LSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLKSSP 256 (465)
Q Consensus 177 ~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~~~ 256 (465)
+........+...++.+...+. ..++... .+ ++. ........++..++....|+|.+.+....+.+|+|||
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p- 220 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWF---WFRGETY-MA--AWN--VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP- 220 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTST---TCCCCCC-CC--C-------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhChhhc-cc--ccC--ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc-
Confidence 5444433333211111111111 1111100 00 110 0111124567889999999999999999999999998
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCc----ccc---CccCchHHHHHHHHHHHHHHHHhhhhccccH
Q 038741 257 PENKVMKKANVIATLTATTLYMLCGCFGYAALGNHAPGN----LLA---GFYKPFWLVDMANSFIVVHLLGAYQVMAQPV 329 (465)
Q Consensus 257 ~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~~~~----il~---~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 329 (465)
+|+.+|++..+..++.++|+...+......+.+...+ ..+ .. ..++...+..+...++.+.+........
T Consensus 221 --~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (445)
T 3l1l_A 221 --KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMA-LGDTAGAIVSFCAAAGCLGSLGGWTLLA 297 (445)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHH-HCTTHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred --cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999998887666655432111 111 11 0123334445555555555544333333
Q ss_pred HHHHHHHhhc-cCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHc----cchHHHHHHHhhhhhhhH
Q 038741 330 FYVIESWTST-RWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMAL----PFFNEVLGLLGALAYWPL 404 (465)
Q Consensus 330 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~v----p~~~~i~~l~Ga~~~~~l 404 (465)
-+.+...-++ ..| +++.+.++.+.| ...+.+..++..+ ..+.... ..++.+.++.+ ....+
T Consensus 298 sR~~~~~a~dg~lP--~~~~~~~~~~~P---------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~ 363 (445)
T 3l1l_A 298 GQTAKAAADDGLFP--PIFARVNKAGTP---------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSV--IFTLV 363 (445)
T ss_dssp HHHHHHHHHTTSSC--GGGGCCCTTCCC---------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHH--HHHHH
T ss_pred HHHHHHHHhCCCCc--HHHHhcCCCCCC---------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHH--HHHHH
Confidence 3333333221 222 112221111112 2333332222222 1111112 24566666655 24578
Q ss_pred HHhhhHHHHHHHhccCC
Q 038741 405 TVYFPLEMYIAQKNIKR 421 (465)
Q Consensus 405 ~filP~l~~l~~~~~~~ 421 (465)
.|.++++.+++.+|+++
T Consensus 364 ~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 364 PYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHhhcCc
Confidence 89999999999875544
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.51 E-value=2.2e-11 Score=123.14 Aligned_cols=354 Identities=13% Similarity=0.065 Sum_probs=196.2
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhhHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHH
Q 038741 19 SKRTGTVWTASAHIVTAIVGSGVLSLAW-GIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 19 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~ 97 (465)
++|+.+.++..+..+++++|+|++..|. +.+..|. .+++..++.+++.......+.|..... ++.-..-+.+++.
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~---P~~Gg~y~~~~~~ 79 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKI---VSNAGPIAFIHKA 79 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTC---CCTTTHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhC---CCCCcHHHhHHHH
Confidence 4677899999999999999999999764 4456665 577777888888888888888754332 3444667889999
Q ss_pred cCCCc-eehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHH---HHHHHhcCCCcCc
Q 038741 98 LGGRK-HKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGI---VEMFLSQIPNIHK 173 (465)
Q Consensus 98 ~G~~~-~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~---i~~pl~~~~~l~~ 173 (465)
+|++. ...+.+..++.....+..+....++++..+.+. . +..++..+.++ +++-+...+..|.
T Consensus 80 ~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~in~~g~~~ 146 (444)
T 3gia_A 80 IGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA-----P--------INTFNIAITEIGIVAFFTALNFFGSKA 146 (444)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----C--------CCHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----C--------CchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99972 223345666666666667777777777655421 0 11122111111 1222223334555
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHHHHhhc
Q 038741 174 LSWLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEIQDTLK 253 (465)
Q Consensus 174 l~~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 253 (465)
...+........+...++.++..+.. .++.+ +.++ .....+.+++.++....|+|.+.+......+|+|
T Consensus 147 ~~~~~~~~~~~~i~~~~~~ii~~~~~---~~~~~-------~~~~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k 215 (444)
T 3gia_A 147 VGRAEFFIVLVKLLILGLFIFAGLIT---IHPSY-------VIPD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIE 215 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---CCGGG-------TSCC-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---cChhh-------cCCC-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHcc
Confidence 55554444433332112111122211 11111 0000 1122334677888889999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC----CCccccCccC---chHHHHHHHHHHHHHHHHhhhhcc
Q 038741 254 SSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNHA----PGNLLAGFYK---PFWLVDMANSFIVVHLLGAYQVMA 326 (465)
Q Consensus 254 ~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~~----~~~il~~~~~---~~~~~~~~~~~~~~~~~~s~pl~~ 326 (465)
|| +|+.+|++..+..++.++|....+......+.+. +++.+....+ .++...+..+...++.+.+..-.+
T Consensus 216 ~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~ 292 (444)
T 3gia_A 216 NP---KKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATI 292 (444)
T ss_dssp SH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 4679999999999999999998877665554321 0111110000 122223344444444444443333
Q ss_pred ccHHHHHHHHhh-ccCCCCccCCCccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhhHH
Q 038741 327 QPVFYVIESWTS-TRWPKSKFVTKEYPVTIGKNNLKFSVNLFRLTWRTIFVVMATLLSMALPFFNEVLGLLGALAYWPLT 405 (465)
Q Consensus 327 ~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~ 405 (465)
...-+.+...-+ +..|+ .+.+.+ . +.....+.+...+ +.+++. +.+++.+.++.+. +..+.
T Consensus 293 ~~~sR~l~a~a~dg~lP~--~f~~~~-~---------~~P~~a~~~~~~~---~~~~~~-~~~~~~l~~~~~~--~~~~~ 354 (444)
T 3gia_A 293 YGGANVAYSLAKDGELPE--FFERKV-W---------FKSTEGLYITSAL---GVLFAL-LFNMEGVASITSA--VFMVI 354 (444)
T ss_dssp TTTHHHHHHHHHHSSCCS--SCCTTS-C---------CSCTHHHHHHHHH---HHHHHH-HSCHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHCCCCCH--HHhCCC-C---------CCCcHHHHHHHHH---HHHHHH-HcCHHHHHHHHHH--HHHHH
Confidence 332333333322 22232 122211 0 1112222222221 222222 2467777777553 45788
Q ss_pred HhhhHHHHHHHhccCC
Q 038741 406 VYFPLEMYIAQKNIKR 421 (465)
Q Consensus 406 filP~l~~l~~~~~~~ 421 (465)
|.++.+.+++.+|+++
T Consensus 355 ~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 355 YLFVILSHYILIDEVG 370 (444)
T ss_dssp HHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHhhhcCC
Confidence 8999988888865543
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.40 E-value=3.4e-10 Score=116.45 Aligned_cols=249 Identities=12% Similarity=-0.006 Sum_probs=138.0
Q ss_pred CCccccccHHHHHHHHHhhhhhhhhhhHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHhhc--CCCCCCccccHHHH
Q 038741 17 GRSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQLGWITGVSTLLIFSSISL-YSSGLLADCYR--APLSGNRNHTYRAA 93 (465)
Q Consensus 17 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~i~l~~~~~l~~-~t~~lL~~~~~--~~~~~~~~~sy~~l 93 (465)
++.+|+.+.++.....++.++| +.++|. .+..|.. +++..++.+.+.. .....+.|... . .+ .-..-..
T Consensus 7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~---~P-~GG~y~~ 78 (511)
T 4djk_A 7 TGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDG---WE-EGGVFAW 78 (511)
T ss_dssp -----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSC---C----CHHHH
T ss_pred CccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHccccc---CC-CCChhhh
Confidence 4456778999999999999986 567775 4566653 3333333333322 25555556433 2 23 4466778
Q ss_pred HHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCccccc-CCc--hhHHHHH-HHHHHhcCC
Q 038741 94 VKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFS-NNP--FMIGIGI-VEMFLSQIP 169 (465)
Q Consensus 94 ~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~--~~~i~~~-i~~pl~~~~ 169 (465)
+++.+|++.+++..+..++.......++....++.+..+.. .+ .++ ..+ +.+...+ +++-+...+
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p-------~~~~~~~~~~~~~~~~~~~~~~in~~ 147 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WP-------ALNEDPITKTIAALIILWALALTQFG 147 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CG-------GGTSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc-------ccccCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888888777666666666666543310 10 111 111 1111111 122223344
Q ss_pred CcCchhHHHHHHHHHH-HHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHHHHHhccchhHHHH
Q 038741 170 NIHKLSWLSIIAAIMS-VSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNIAFACAYLQILIEI 248 (465)
Q Consensus 170 ~l~~l~~~s~~~~~~~-~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 248 (465)
..|....+........ +...++.+...+.....+++..... +++ ...+.....+...++....|+|.+.+....+
T Consensus 148 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~ 223 (511)
T 4djk_A 148 GTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEM---DSK-TFFPDFSKVGTLVVFVAFILSYMGVEASATH 223 (511)
T ss_dssp CSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC----------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---ccc-ccCCCcccchHHHHHHHHHHHHhhHHHHHHH
Confidence 5555555554433221 1111111112222111111110000 000 0111111223445677889999999999999
Q ss_pred HHhhcCCCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCC
Q 038741 249 QDTLKSSPPENKVMKKANVIATLTATTLYMLCGCFGYAALGNH 291 (465)
Q Consensus 249 ~~~m~~~~~~~~~~~~~~~~a~~~~~i~Y~~~g~~gy~~fG~~ 291 (465)
.+|+||| +|+.+|++..++.++.++|....+......+++
T Consensus 224 a~E~k~P---~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 224 VNEMSNP---GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp GSSSSCC---TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 9999998 378999999999999999999888777666654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.65 E-value=1.1e-05 Score=82.13 Aligned_cols=242 Identities=11% Similarity=0.073 Sum_probs=132.6
Q ss_pred CccccccHHHHHHHHHhhhhhhhhhhHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHH
Q 038741 18 RSKRTGTVWTASAHIVTAIVGSGVLSLAWGIAQ-LGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKT 96 (465)
Q Consensus 18 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~ 96 (465)
+++|+.++++-+..-++..++.+.+.+.-.+.. .++.-+++.+++..++...-..+......+ ...++.++.+.
T Consensus 22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~-----~Gl~~~v~~R~ 96 (501)
T 2jln_A 22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIR-----WGINFTVAARM 96 (501)
T ss_dssp GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHH-----HCCCHHHHTTT
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhh-----cCCChhhhhHh
Confidence 346767788877777777777777766655543 233445544444444433333333232111 23469999999
Q ss_pred HcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCccccc-CCchhHHHHHHHHHHhcCCCcCchh
Q 038741 97 YLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFS-NNPFMIGIGIVEMFLSQIPNIHKLS 175 (465)
Q Consensus 97 ~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~pl~~~~~l~~l~ 175 (465)
.||+++..+..+...+.++|-........++.+..+++... . ++ .....+++.++.++.. ...++.++
T Consensus 97 ~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g---------~~~~~v~~~i~~~l~~~~~-~~G~~~i~ 165 (501)
T 2jln_A 97 PFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-G---------FTNLPLWIVIFGAIQVVTT-FYGITFIR 165 (501)
T ss_dssp TSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---------CCCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------cchHHHHHHHHHHHHHHHH-HhCHHHHH
Confidence 99999999999999999999999888899999988764321 1 11 1223455566666666 44577777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccccCCCcccccchhhHHHHHHHH-HHHhccchhHHHHHHhhcC
Q 038741 176 WLSIIAAIMSVSYAGIGMGLAFTKAVLGHGETTSLTGEEIGPNLTAADKTWGMFSAIGNI-AFACAYLQILIEIQDTLKS 254 (465)
Q Consensus 176 ~~s~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~~~~i~~i~~~m~~ 254 (465)
.+..+.....+...+......+. +.+........ ..+....+.+..++... .+.-....+.++..+.+|+
T Consensus 166 ~~~~~~~p~~~i~~i~~~~~~l~---~~g~~~~~~~~------~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~ 236 (501)
T 2jln_A 166 WMNVFASPVLLAMGVYMVYLMLD---GADVSLGEVMS------MGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKV 236 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHTCCHHHHTT------CCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hcCCcchhhhc------cCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCC
Confidence 77766655443322221111121 11100000000 01111233444444332 2222344678999999998
Q ss_pred CCc-hhhH-------HHHHHHHHHHHHHHHHHHhhhhh
Q 038741 255 SPP-ENKV-------MKKANVIATLTATTLYMLCGCFG 284 (465)
Q Consensus 255 ~~~-~~~~-------~~~~~~~a~~~~~i~Y~~~g~~g 284 (465)
++. ++++ .......+..+...+...+|...
T Consensus 237 ~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~ 274 (501)
T 2jln_A 237 DPNASREGQTKADARYATAQWLGMVPASIIFGFIGAAS 274 (501)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 732 1222 22233345555555555566543
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.66 E-value=0.069 Score=54.54 Aligned_cols=148 Identities=10% Similarity=0.153 Sum_probs=78.4
Q ss_pred cccccHHHHHHHHHhhhhhhh-hhhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHc
Q 038741 20 KRTGTVWTASAHIVTAIVGSG-VLSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYL 98 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~ 98 (465)
.|+.+++...+.+..+.+++. .+++|-...+.|+........ .++.-......+..-.++ .+..|..|.-++-|
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~----~~~~T~~e~l~~Rf 93 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE----KGIYTIPEFVEKRF 93 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHH----TTCCSHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHH----cCCccHHHHHHHHc
Confidence 456678888888877777665 556888877788643211111 111111112222222222 26789999999999
Q ss_pred CCCceehhHHHHHHH-HHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHH
Q 038741 99 GGRKHKICGLVQYVL-LVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWL 177 (465)
Q Consensus 99 G~~~~~~~~i~~~~~-~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 177 (465)
|++.+.+..+...+. .+....+-+...+..++.+. .++...-+++.++++..-+...-++...+.
T Consensus 94 g~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------------Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~T 159 (530)
T 3dh4_A 94 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------------GIPLMYSILGLALFALVYSIYGGLSAVVWT 159 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------TCCHHHHHHHHHHHHHHTTC------CCSH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CCCHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 998877766654432 22222233333444444432 122233345555556666777888888888
Q ss_pred HHHHHHHHH
Q 038741 178 SIIAAIMSV 186 (465)
Q Consensus 178 s~~~~~~~~ 186 (465)
-.+-.+..+
T Consensus 160 D~iQ~~im~ 168 (530)
T 3dh4_A 160 DVIQVFFLV 168 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666544
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.25 E-value=0.24 Score=51.22 Aligned_cols=148 Identities=9% Similarity=0.141 Sum_probs=77.7
Q ss_pred cccccHHHHHHHHHhhhhhhhh-hhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHc
Q 038741 20 KRTGTVWTASAHIVTAIVGSGV-LSLAWGIAQLGWITGVSTLLIFSSISLYSSGLLADCYRAPLSGNRNHTYRAAVKTYL 98 (465)
Q Consensus 20 ~~~~s~~~a~~~l~~~~iG~Gi-L~LP~af~~~G~~~g~i~l~~~~~l~~~t~~lL~~~~~~~~~~~~~~sy~~l~~~~~ 98 (465)
.|+.+++.....+..+.+++.. ++.|-...+.|+........ ..+........+..-.++ .+..|..|.-++-|
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r----~~~~T~~e~l~~Rf 122 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE----KGIYTIPEFVEKRF 122 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHH----TTCCSHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHh----CCCCCcHHHHHHHc
Confidence 3666788888888777776654 57887777788632211110 000011112222222222 26789999999999
Q ss_pred CCCceehhHHHHHH-HHHHHHHHHHHHHHhhHHHHHhhcccccCCCCCcccccCCchhHHHHHHHHHHhcCCCcCchhHH
Q 038741 99 GGRKHKICGLVQYV-LLVGMVVGYTITAAISMLTIRKSNCFQKRGHGAQCKFSNNPFMIGIGIVEMFLSQIPNIHKLSWL 177 (465)
Q Consensus 99 G~~~~~~~~i~~~~-~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 177 (465)
|++.+.+..+...+ ..+.....-+...+..++.+.. ++...-+++.++++...+...-++...+.
T Consensus 123 g~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~av~~T 188 (593)
T 2xq2_A 123 NKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVVWT 188 (593)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHTTC---CCHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 98877666554432 2222222333334555555432 22223344555556666777888888877
Q ss_pred HHHHHHHHH
Q 038741 178 SIIAAIMSV 186 (465)
Q Consensus 178 s~~~~~~~~ 186 (465)
-.+-.+..+
T Consensus 189 D~iQ~iiml 197 (593)
T 2xq2_A 189 DVIQVFFLV 197 (593)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766665444
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=92.83 E-value=8.8 Score=38.60 Aligned_cols=108 Identities=15% Similarity=0.041 Sum_probs=58.4
Q ss_pred cHHHHHHHHHhhhhhhh-hhhHHHHHHhhchH----HHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccHHHHHHHH
Q 038741 24 TVWTASAHIVTAIVGSG-VLSLAWGIAQLGWI----TGVSTLLIFSSISLYSSGLLADCYR-APLSGNRNHTYRAAVKTY 97 (465)
Q Consensus 24 s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~----~g~i~l~~~~~l~~~t~~lL~~~~~-~~~~~~~~~sy~~l~~~~ 97 (465)
|..+-+...+++.+|.| +.=.||-..+-|-. +=++.++++++=-.+.=..+.+-.. .. |. +-.+..++.
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~----r~-~~i~a~~~l 84 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQG----HG-TTPAIFYLL 84 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTT----CC-SHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhcc----CC-CHHHHHHHh
Confidence 56778888899999999 77799999888732 2222222222222222223333100 11 11 222223333
Q ss_pred cCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 038741 98 LGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKSN 136 (465)
Q Consensus 98 ~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~ 136 (465)
..++.-.-+.+...+..+..++-|.++.+-.+..+...+
T Consensus 85 ~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~ 123 (519)
T 2a65_A 85 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFL 123 (519)
T ss_dssp SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222112235556666666677778888877777766653
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=24.59 E-value=4.5e+02 Score=24.80 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=43.6
Q ss_pred cccHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 038741 87 NHTYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKS 135 (465)
Q Consensus 87 ~~sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 135 (465)
.....++.+..+|+++..++.+...+..++...++....++.+..+.++
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3468899999999999999999999999999999999999988887764
No 9
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=20.99 E-value=5.2e+02 Score=24.38 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=39.8
Q ss_pred cHHHHHHHHcCCCceehhHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 038741 89 TYRAAVKTYLGGRKHKICGLVQYVLLVGMVVGYTITAAISMLTIRKS 135 (465)
Q Consensus 89 sy~~l~~~~~G~~~~~~~~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 135 (465)
...+..+..+|+++..++.+...+..++...+.+...+..+..+.++
T Consensus 259 ~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 259 ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 46677888888888889999999999999999998888888888765
No 10
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=12.05 E-value=2.7e+02 Score=16.78 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038741 431 LLNLVCFLAALGAACSSIHGLYK 453 (465)
Q Consensus 431 ~~~~~~~~~~~~g~~~si~~ii~ 453 (465)
.++++++..|+.|++..+.=-|.
T Consensus 13 ~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888755544443
Done!