Query 038742
Match_columns 243
No_of_seqs 163 out of 1743
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:49:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2E-30 4.3E-35 245.9 23.2 239 1-243 1-266 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.7 2.1E-17 4.5E-22 140.0 11.7 96 147-243 1-106 (287)
3 PLN03210 Resistant to P. syrin 99.4 5.6E-12 1.2E-16 125.1 12.8 99 142-243 184-301 (1153)
4 PRK00411 cdc6 cell division co 98.7 1.3E-07 2.9E-12 83.7 12.3 96 141-237 29-135 (394)
5 cd01128 rho_factor Transcripti 98.7 2.2E-08 4.8E-13 83.0 6.8 52 162-215 15-68 (249)
6 PTZ00202 tuzin; Provisional 98.7 3.2E-06 6.8E-11 74.7 17.8 87 141-236 261-353 (550)
7 TIGR02928 orc1/cdc6 family rep 98.6 3.5E-07 7.6E-12 80.1 11.7 94 142-236 15-125 (365)
8 PRK09376 rho transcription ter 98.6 6.4E-08 1.4E-12 84.3 5.9 61 154-216 159-222 (416)
9 PF13191 AAA_16: AAA ATPase do 98.4 6.9E-07 1.5E-11 70.3 6.8 47 144-191 2-51 (185)
10 PF13401 AAA_22: AAA domain; P 98.4 8.2E-07 1.8E-11 66.0 6.5 78 163-240 4-88 (131)
11 PRK11331 5-methylcytosine-spec 98.4 5.7E-06 1.2E-10 73.6 11.9 69 142-213 175-243 (459)
12 TIGR00767 rho transcription te 98.4 1.2E-06 2.5E-11 76.8 7.4 54 162-217 167-222 (415)
13 PRK08118 topology modulation p 98.3 4.1E-07 8.8E-12 71.1 3.0 52 164-217 2-58 (167)
14 TIGR03015 pepcterm_ATPase puta 98.3 1.3E-05 2.9E-10 67.1 12.3 57 161-221 41-97 (269)
15 PF01637 Arch_ATPase: Archaeal 98.2 2.1E-06 4.7E-11 69.8 4.2 44 144-187 1-44 (234)
16 cd00009 AAA The AAA+ (ATPases 98.1 1E-05 2.2E-10 60.4 7.6 60 145-207 1-60 (151)
17 PF05496 RuvB_N: Holliday junc 98.0 1.2E-05 2.5E-10 65.2 5.4 50 142-194 24-78 (233)
18 PRK13342 recombination factor 98.0 3.8E-05 8.3E-10 68.6 9.2 46 142-187 12-60 (413)
19 COG1474 CDC6 Cdc6-related prot 98.0 0.00012 2.7E-09 64.1 11.7 94 142-237 17-120 (366)
20 PF05729 NACHT: NACHT domain 97.9 5E-05 1.1E-09 58.4 7.9 43 164-207 1-47 (166)
21 TIGR02903 spore_lon_C ATP-depe 97.9 0.00046 1E-08 64.7 14.8 61 142-203 154-217 (615)
22 TIGR00635 ruvB Holliday juncti 97.8 2.4E-05 5.1E-10 66.9 4.6 46 142-187 4-54 (305)
23 PRK07261 topology modulation p 97.8 5.4E-05 1.2E-09 59.3 5.9 50 165-215 2-52 (171)
24 PF13207 AAA_17: AAA domain; P 97.8 2.6E-05 5.6E-10 57.1 3.5 23 165-187 1-23 (121)
25 PRK00080 ruvB Holliday junctio 97.7 0.00013 2.9E-09 63.1 7.7 46 142-187 25-75 (328)
26 KOG2028 ATPase related to the 97.6 0.00015 3.2E-09 62.5 6.9 62 153-219 152-213 (554)
27 smart00763 AAA_PrkA PrkA AAA d 97.6 8.5E-05 1.8E-09 64.5 5.1 57 142-199 51-118 (361)
28 PTZ00112 origin recognition co 97.6 0.00061 1.3E-08 65.2 10.5 80 141-221 754-843 (1164)
29 COG0466 Lon ATP-dependent Lon 97.6 0.00085 1.8E-08 62.5 11.1 51 141-194 322-378 (782)
30 KOG2004 Mitochondrial ATP-depe 97.5 0.0052 1.1E-07 57.4 15.6 47 141-187 410-462 (906)
31 KOG2543 Origin recognition com 97.5 0.00032 7E-09 60.7 7.2 75 141-221 5-82 (438)
32 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00021 4.5E-09 58.2 5.9 55 147-204 22-76 (226)
33 PRK13341 recombination factor 97.5 0.00044 9.6E-09 65.7 8.5 50 142-194 28-80 (725)
34 PF05621 TniB: Bacterial TniB 97.5 0.0024 5.1E-08 54.2 11.5 94 150-243 45-151 (302)
35 PRK00440 rfc replication facto 97.5 0.00061 1.3E-08 58.4 8.3 46 142-187 17-62 (319)
36 PRK06696 uridine kinase; Valid 97.4 0.00028 6E-09 57.7 5.7 42 146-187 2-46 (223)
37 PRK12402 replication factor C 97.4 0.00019 4.2E-09 62.0 5.0 46 142-187 15-60 (337)
38 PF00448 SRP54: SRP54-type pro 97.4 0.0014 3.1E-08 52.5 9.6 56 163-221 1-57 (196)
39 COG2256 MGS1 ATPase related to 97.4 0.00038 8.3E-09 60.7 6.2 50 143-195 25-77 (436)
40 PRK05564 DNA polymerase III su 97.4 0.001 2.3E-08 57.2 9.0 77 142-219 4-85 (313)
41 CHL00095 clpC Clp protease ATP 97.4 0.00025 5.5E-09 68.7 5.2 46 142-187 179-224 (821)
42 PLN03025 replication factor C 97.4 0.00069 1.5E-08 58.4 7.4 46 142-187 13-58 (319)
43 PF03029 ATP_bind_1: Conserved 97.3 0.00042 9.1E-09 57.3 5.5 31 168-201 1-31 (238)
44 PF13238 AAA_18: AAA domain; P 97.3 0.0002 4.4E-09 52.6 3.2 21 166-186 1-21 (129)
45 PTZ00301 uridine kinase; Provi 97.3 0.00034 7.5E-09 56.6 4.6 25 163-187 3-27 (210)
46 COG1618 Predicted nucleotide k 97.3 0.00038 8.2E-09 53.4 4.3 25 163-187 5-29 (179)
47 PRK15455 PrkA family serine pr 97.3 0.00037 8E-09 63.9 5.1 45 143-187 77-127 (644)
48 TIGR03345 VI_ClpV1 type VI sec 97.3 0.00035 7.6E-09 67.8 5.2 46 142-187 187-232 (852)
49 PRK06547 hypothetical protein; 97.3 0.0005 1.1E-08 53.9 5.1 34 154-187 6-39 (172)
50 TIGR00763 lon ATP-dependent pr 97.3 0.0056 1.2E-07 59.1 13.1 47 141-187 319-371 (775)
51 PRK08233 hypothetical protein; 97.3 0.00029 6.3E-09 55.3 3.7 25 163-187 3-27 (182)
52 TIGR03499 FlhF flagellar biosy 97.2 0.0022 4.8E-08 54.4 9.0 25 163-187 194-218 (282)
53 TIGR02639 ClpA ATP-dependent C 97.2 0.00044 9.5E-09 66.2 5.3 46 142-187 182-227 (731)
54 PF00485 PRK: Phosphoribulokin 97.2 0.00029 6.2E-09 56.3 3.4 23 165-187 1-23 (194)
55 PRK05480 uridine/cytidine kina 97.2 0.00033 7.2E-09 56.5 3.8 26 162-187 5-30 (209)
56 PRK07667 uridine kinase; Provi 97.2 0.00052 1.1E-08 54.8 4.8 37 151-187 3-41 (193)
57 PRK04040 adenylate kinase; Pro 97.2 0.0012 2.6E-08 52.5 6.8 25 163-187 2-26 (188)
58 PRK14963 DNA polymerase III su 97.2 0.00036 7.8E-09 63.8 4.2 46 142-187 14-60 (504)
59 PF13173 AAA_14: AAA domain 97.2 0.00072 1.6E-08 50.2 5.2 41 163-207 2-42 (128)
60 PHA00729 NTP-binding motif con 97.2 0.00064 1.4E-08 55.4 5.1 35 153-187 7-41 (226)
61 COG2255 RuvB Holliday junction 97.2 0.00058 1.3E-08 57.1 4.7 46 142-187 26-76 (332)
62 PRK10865 protein disaggregatio 97.2 0.00054 1.2E-08 66.6 5.3 46 142-187 178-223 (857)
63 COG1102 Cmk Cytidylate kinase 97.2 0.0015 3.3E-08 50.1 6.5 43 165-221 2-44 (179)
64 PRK04195 replication factor C 97.2 0.00033 7.2E-09 63.9 3.6 46 142-187 14-63 (482)
65 PRK08084 DNA replication initi 97.2 0.0029 6.2E-08 52.2 8.8 60 142-204 23-83 (235)
66 TIGR01242 26Sp45 26S proteasom 97.1 0.00055 1.2E-08 60.1 4.6 46 142-187 122-180 (364)
67 TIGR00235 udk uridine kinase. 97.1 0.00041 8.9E-09 56.0 3.5 26 162-187 5-30 (207)
68 PRK00771 signal recognition pa 97.1 0.0052 1.1E-07 55.2 10.7 57 162-221 94-151 (437)
69 PF12061 DUF3542: Protein of u 97.1 0.00057 1.2E-08 57.6 4.2 94 14-115 301-401 (402)
70 PRK05541 adenylylsulfate kinas 97.1 0.00064 1.4E-08 53.3 4.4 36 162-200 6-41 (176)
71 PRK11034 clpA ATP-dependent Cl 97.1 0.0039 8.5E-08 59.7 10.3 45 143-187 187-231 (758)
72 PRK14949 DNA polymerase III su 97.1 0.0023 5E-08 61.6 8.7 46 142-187 16-62 (944)
73 PRK03992 proteasome-activating 97.1 0.00057 1.2E-08 60.6 4.3 46 142-187 131-189 (389)
74 PRK14962 DNA polymerase III su 97.1 0.00081 1.7E-08 61.0 5.2 46 142-187 14-60 (472)
75 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00052 1.1E-08 54.1 3.6 26 162-187 2-27 (188)
76 PRK06762 hypothetical protein; 97.1 0.00055 1.2E-08 53.1 3.7 25 163-187 2-26 (166)
77 cd02019 NK Nucleoside/nucleoti 97.1 0.00053 1.2E-08 45.2 2.9 22 165-186 1-22 (69)
78 cd01393 recA_like RecA is a b 97.1 0.0058 1.3E-07 49.7 9.7 48 162-212 18-71 (226)
79 PRK14961 DNA polymerase III su 97.1 0.001 2.2E-08 58.5 5.5 46 142-187 16-62 (363)
80 PRK14722 flhF flagellar biosyn 97.1 0.0035 7.6E-08 55.1 8.7 25 163-187 137-161 (374)
81 smart00382 AAA ATPases associa 97.1 0.00078 1.7E-08 49.5 4.1 24 164-187 3-26 (148)
82 PF13671 AAA_33: AAA domain; P 97.1 0.00059 1.3E-08 51.3 3.5 23 165-187 1-23 (143)
83 TIGR03346 chaperone_ClpB ATP-d 97.0 0.00087 1.9E-08 65.3 5.3 46 142-187 173-218 (852)
84 PRK03839 putative kinase; Prov 97.0 0.00058 1.3E-08 53.7 3.4 23 165-187 2-24 (180)
85 TIGR02237 recomb_radB DNA repa 97.0 0.0016 3.4E-08 52.5 6.1 48 162-213 11-58 (209)
86 PRK09270 nucleoside triphospha 97.0 0.001 2.2E-08 54.6 4.9 27 161-187 31-57 (229)
87 PRK08727 hypothetical protein; 97.0 0.002 4.3E-08 53.1 6.6 58 144-204 22-79 (233)
88 PRK10787 DNA-binding ATP-depen 97.0 0.0051 1.1E-07 59.3 10.3 47 141-187 321-373 (784)
89 PF05659 RPW8: Arabidopsis bro 97.0 0.0061 1.3E-07 46.4 8.7 108 4-119 8-115 (147)
90 PHA02544 44 clamp loader, smal 97.0 0.00094 2E-08 57.3 4.8 46 142-187 21-67 (316)
91 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0032 7E-08 52.9 7.7 54 162-218 68-123 (274)
92 PF00004 AAA: ATPase family as 97.0 0.00073 1.6E-08 49.8 3.3 22 166-187 1-22 (132)
93 COG1428 Deoxynucleoside kinase 97.0 0.0007 1.5E-08 54.2 3.2 25 163-187 4-28 (216)
94 PRK13765 ATP-dependent proteas 96.9 0.0017 3.6E-08 60.9 6.0 75 142-221 31-105 (637)
95 cd02023 UMPK Uridine monophosp 96.9 0.00062 1.3E-08 54.4 2.8 23 165-187 1-23 (198)
96 KOG2227 Pre-initiation complex 96.9 0.01 2.2E-07 53.0 10.3 99 141-241 149-257 (529)
97 COG0572 Udk Uridine kinase [Nu 96.9 0.0024 5.2E-08 51.6 6.0 26 162-187 7-32 (218)
98 TIGR02881 spore_V_K stage V sp 96.9 0.00093 2E-08 55.9 3.8 45 143-187 7-66 (261)
99 TIGR00764 lon_rel lon-related 96.9 0.0023 4.9E-08 60.0 6.7 74 142-221 18-92 (608)
100 PRK11889 flhF flagellar biosyn 96.9 0.0069 1.5E-07 53.5 9.2 26 162-187 240-265 (436)
101 KOG1532 GTPase XAB1, interacts 96.9 0.0049 1.1E-07 51.4 7.7 26 162-187 18-43 (366)
102 PRK14958 DNA polymerase III su 96.9 0.0046 1E-07 56.7 8.4 46 142-187 16-62 (509)
103 PRK06893 DNA replication initi 96.9 0.0033 7.1E-08 51.6 6.8 39 162-203 38-76 (229)
104 PRK12724 flagellar biosynthesi 96.9 0.0045 9.7E-08 55.1 7.9 25 163-187 223-247 (432)
105 PRK10463 hydrogenase nickel in 96.9 0.0032 7E-08 53.3 6.7 37 151-187 92-128 (290)
106 TIGR00959 ffh signal recogniti 96.8 0.013 2.9E-07 52.4 10.7 26 162-187 98-123 (428)
107 cd02025 PanK Pantothenate kina 96.8 0.00078 1.7E-08 55.0 2.7 23 165-187 1-23 (220)
108 PRK05703 flhF flagellar biosyn 96.8 0.0058 1.3E-07 54.8 8.4 25 163-187 221-245 (424)
109 PRK14956 DNA polymerase III su 96.8 0.0015 3.2E-08 59.0 4.6 46 142-187 18-64 (484)
110 PRK14527 adenylate kinase; Pro 96.8 0.0024 5.2E-08 50.8 5.4 26 162-187 5-30 (191)
111 COG0467 RAD55 RecA-superfamily 96.8 0.0034 7.4E-08 52.5 6.5 49 162-215 22-70 (260)
112 PRK12608 transcription termina 96.8 0.0065 1.4E-07 53.2 8.2 70 150-221 119-191 (380)
113 PRK13531 regulatory ATPase Rav 96.8 0.0028 6E-08 57.3 6.0 51 142-195 20-70 (498)
114 PRK14957 DNA polymerase III su 96.8 0.0017 3.7E-08 59.8 4.8 46 142-187 16-62 (546)
115 KOG0991 Replication factor C, 96.8 0.0019 4.2E-08 52.6 4.5 71 142-213 27-97 (333)
116 PRK00625 shikimate kinase; Pro 96.8 0.0012 2.5E-08 51.9 3.2 23 165-187 2-24 (173)
117 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0035 7.6E-08 51.3 6.2 50 162-212 18-71 (235)
118 PRK08903 DnaA regulatory inact 96.8 0.0032 6.9E-08 51.4 5.9 43 145-187 22-66 (227)
119 KOG0744 AAA+-type ATPase [Post 96.8 0.0072 1.6E-07 51.6 8.0 75 162-242 176-252 (423)
120 cd02024 NRK1 Nicotinamide ribo 96.8 0.001 2.2E-08 52.9 2.9 23 165-187 1-23 (187)
121 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.001 2.2E-08 52.3 2.9 23 165-187 1-23 (183)
122 PRK14955 DNA polymerase III su 96.8 0.002 4.3E-08 57.4 4.9 46 142-187 16-62 (397)
123 PRK10867 signal recognition pa 96.8 0.017 3.6E-07 51.9 10.8 26 162-187 99-124 (433)
124 TIGR02322 phosphon_PhnN phosph 96.8 0.0013 2.8E-08 51.6 3.4 24 164-187 2-25 (179)
125 PRK07994 DNA polymerase III su 96.8 0.0074 1.6E-07 56.7 8.8 46 142-187 16-62 (647)
126 TIGR00390 hslU ATP-dependent p 96.8 0.0048 1E-07 54.8 7.2 74 142-218 12-103 (441)
127 cd02020 CMPK Cytidine monophos 96.8 0.0012 2.6E-08 49.8 2.9 23 165-187 1-23 (147)
128 PRK08116 hypothetical protein; 96.8 0.0068 1.5E-07 51.0 7.8 37 164-203 115-151 (268)
129 TIGR00554 panK_bact pantothena 96.7 0.002 4.3E-08 54.7 4.5 26 162-187 61-86 (290)
130 cd03115 SRP The signal recogni 96.7 0.009 1.9E-07 46.6 8.0 24 164-187 1-24 (173)
131 PRK07003 DNA polymerase III su 96.7 0.0098 2.1E-07 56.5 9.3 46 142-187 16-62 (830)
132 COG1936 Predicted nucleotide k 96.7 0.0012 2.5E-08 51.3 2.7 20 165-184 2-21 (180)
133 PRK09087 hypothetical protein; 96.7 0.016 3.6E-07 47.4 9.7 26 162-187 43-68 (226)
134 PRK12727 flagellar biosynthesi 96.7 0.0081 1.8E-07 54.9 8.5 25 163-187 350-374 (559)
135 PTZ00088 adenylate kinase 1; P 96.7 0.0025 5.5E-08 52.3 4.9 23 165-187 8-30 (229)
136 TIGR03263 guanyl_kin guanylate 96.7 0.0013 2.9E-08 51.6 3.1 24 164-187 2-25 (180)
137 PF00625 Guanylate_kin: Guanyl 96.7 0.0025 5.4E-08 50.3 4.6 36 163-201 2-37 (183)
138 cd02028 UMPK_like Uridine mono 96.7 0.0013 2.8E-08 51.9 2.9 23 165-187 1-23 (179)
139 CHL00181 cbbX CbbX; Provisiona 96.7 0.003 6.4E-08 53.7 5.2 46 142-187 23-83 (287)
140 PF03205 MobB: Molybdopterin g 96.7 0.0019 4E-08 48.9 3.5 39 164-204 1-39 (140)
141 PRK06217 hypothetical protein; 96.7 0.0015 3.3E-08 51.6 3.2 36 164-201 2-39 (183)
142 PF08477 Miro: Miro-like prote 96.7 0.0015 3.3E-08 47.3 3.0 22 166-187 2-23 (119)
143 PRK00131 aroK shikimate kinase 96.7 0.0018 3.8E-08 50.3 3.5 25 163-187 4-28 (175)
144 PTZ00454 26S protease regulato 96.7 0.0024 5.2E-08 56.7 4.7 46 142-187 145-203 (398)
145 PRK05896 DNA polymerase III su 96.7 0.0026 5.7E-08 59.0 5.1 46 142-187 16-62 (605)
146 cd01120 RecA-like_NTPases RecA 96.7 0.0025 5.5E-08 48.4 4.3 39 165-206 1-39 (165)
147 PRK09361 radB DNA repair and r 96.7 0.0045 9.8E-08 50.5 6.0 46 162-211 22-67 (225)
148 PF07728 AAA_5: AAA domain (dy 96.7 0.003 6.4E-08 47.4 4.5 42 166-213 2-43 (139)
149 PRK10536 hypothetical protein; 96.7 0.017 3.7E-07 48.1 9.3 43 143-187 56-98 (262)
150 TIGR00073 hypB hydrogenase acc 96.7 0.0023 5E-08 51.6 4.1 31 157-187 16-46 (207)
151 PRK13975 thymidylate kinase; P 96.7 0.0018 3.9E-08 51.5 3.5 24 164-187 3-26 (196)
152 PRK04841 transcriptional regul 96.6 0.0095 2.1E-07 58.3 9.1 68 142-220 14-83 (903)
153 PRK00889 adenylylsulfate kinas 96.6 0.0019 4.2E-08 50.5 3.5 25 163-187 4-28 (175)
154 PF04665 Pox_A32: Poxvirus A32 96.6 0.0032 6.9E-08 51.9 4.8 35 165-202 15-49 (241)
155 PRK12726 flagellar biosynthesi 96.6 0.028 6.2E-07 49.4 10.9 38 162-202 205-242 (407)
156 cd00071 GMPK Guanosine monopho 96.6 0.0018 3.9E-08 48.8 3.1 23 165-187 1-23 (137)
157 TIGR02902 spore_lonB ATP-depen 96.6 0.004 8.7E-08 57.5 6.0 45 143-187 66-110 (531)
158 PRK14721 flhF flagellar biosyn 96.6 0.017 3.8E-07 51.5 9.7 25 163-187 191-215 (420)
159 PRK13947 shikimate kinase; Pro 96.6 0.002 4.3E-08 50.1 3.4 23 165-187 3-25 (171)
160 PRK14530 adenylate kinase; Pro 96.6 0.0019 4.2E-08 52.4 3.4 23 165-187 5-27 (215)
161 PRK10751 molybdopterin-guanine 96.6 0.0023 4.9E-08 50.2 3.6 26 162-187 5-30 (173)
162 PRK00300 gmk guanylate kinase; 96.6 0.0019 4.1E-08 51.8 3.3 25 163-187 5-29 (205)
163 PRK14960 DNA polymerase III su 96.6 0.003 6.5E-08 59.1 4.9 46 142-187 15-61 (702)
164 PRK00698 tmk thymidylate kinas 96.6 0.011 2.4E-07 47.1 7.7 24 164-187 4-27 (205)
165 PF00158 Sigma54_activat: Sigm 96.6 0.0028 6.1E-08 49.5 4.0 44 144-187 1-46 (168)
166 CHL00081 chlI Mg-protoporyphyr 96.6 0.003 6.5E-08 55.0 4.5 46 142-187 17-62 (350)
167 cd01672 TMPK Thymidine monopho 96.6 0.0063 1.4E-07 48.1 6.1 23 165-187 2-24 (200)
168 cd02021 GntK Gluconate kinase 96.6 0.0018 3.9E-08 49.3 2.8 23 165-187 1-23 (150)
169 PTZ00361 26 proteosome regulat 96.6 0.0029 6.3E-08 56.8 4.5 45 143-187 184-241 (438)
170 PRK14964 DNA polymerase III su 96.6 0.0032 6.8E-08 57.3 4.8 45 142-186 13-58 (491)
171 cd01428 ADK Adenylate kinase ( 96.6 0.0033 7.2E-08 49.8 4.4 22 166-187 2-23 (194)
172 TIGR02012 tigrfam_recA protein 96.6 0.0095 2.1E-07 51.3 7.4 45 162-209 54-98 (321)
173 PF13086 AAA_11: AAA domain; P 96.6 0.0092 2E-07 48.2 7.1 53 165-217 19-75 (236)
174 PRK13949 shikimate kinase; Pro 96.6 0.0021 4.6E-08 50.2 3.2 23 165-187 3-25 (169)
175 cd00227 CPT Chloramphenicol (C 96.5 0.0028 6E-08 49.7 3.8 24 164-187 3-26 (175)
176 PF03308 ArgK: ArgK protein; 96.5 0.0063 1.4E-07 50.5 6.0 60 150-210 14-75 (266)
177 PF08423 Rad51: Rad51; InterP 96.5 0.022 4.8E-07 47.6 9.4 58 162-221 37-98 (256)
178 cd01394 radB RadB. The archaea 96.5 0.0075 1.6E-07 48.9 6.5 42 162-206 18-59 (218)
179 PRK06995 flhF flagellar biosyn 96.5 0.015 3.4E-07 52.7 9.0 25 163-187 256-280 (484)
180 TIGR03689 pup_AAA proteasome A 96.5 0.0039 8.5E-08 57.0 5.2 45 143-187 183-240 (512)
181 PRK13695 putative NTPase; Prov 96.5 0.0037 8E-08 48.9 4.5 23 165-187 2-24 (174)
182 cd00983 recA RecA is a bacter 96.5 0.0093 2E-07 51.4 7.2 45 162-209 54-98 (325)
183 PRK05642 DNA replication initi 96.5 0.027 5.8E-07 46.4 9.7 39 163-204 45-83 (234)
184 PRK12377 putative replication 96.5 0.0057 1.2E-07 50.8 5.7 39 162-203 100-138 (248)
185 KOG0733 Nuclear AAA ATPase (VC 96.5 0.01 2.2E-07 54.6 7.6 45 143-187 191-247 (802)
186 COG3640 CooC CO dehydrogenase 96.5 0.0055 1.2E-07 50.0 5.3 23 165-187 2-24 (255)
187 TIGR00176 mobB molybdopterin-g 96.5 0.0042 9E-08 47.9 4.4 35 165-201 1-35 (155)
188 PF00910 RNA_helicase: RNA hel 96.5 0.0022 4.8E-08 46.1 2.7 22 166-187 1-22 (107)
189 PRK14723 flhF flagellar biosyn 96.5 0.016 3.4E-07 55.4 9.0 78 163-243 185-269 (767)
190 PF07726 AAA_3: ATPase family 96.5 0.0027 5.9E-08 47.0 3.2 27 166-195 2-28 (131)
191 cd00464 SK Shikimate kinase (S 96.5 0.0026 5.7E-08 48.4 3.2 22 166-187 2-23 (154)
192 PF03266 NTPase_1: NTPase; In 96.5 0.0026 5.6E-08 49.7 3.2 22 166-187 2-23 (168)
193 PRK14970 DNA polymerase III su 96.5 0.0047 1E-07 54.3 5.2 46 142-187 17-63 (367)
194 KOG3347 Predicted nucleotide k 96.5 0.0055 1.2E-07 46.5 4.6 25 163-187 7-31 (176)
195 TIGR02397 dnaX_nterm DNA polym 96.5 0.005 1.1E-07 53.7 5.2 46 142-187 14-60 (355)
196 TIGR02030 BchI-ChlI magnesium 96.4 0.0054 1.2E-07 53.3 5.3 45 142-186 4-48 (337)
197 PF01583 APS_kinase: Adenylyls 96.4 0.0039 8.4E-08 48.0 3.9 25 163-187 2-26 (156)
198 PRK03846 adenylylsulfate kinas 96.4 0.0033 7.1E-08 50.4 3.7 27 161-187 22-48 (198)
199 PRK10078 ribose 1,5-bisphospho 96.4 0.0027 5.8E-08 50.3 3.1 24 164-187 3-26 (186)
200 PRK12723 flagellar biosynthesi 96.4 0.023 5E-07 50.3 9.2 25 163-187 174-198 (388)
201 PRK14951 DNA polymerase III su 96.4 0.0045 9.8E-08 57.9 5.0 46 142-187 16-62 (618)
202 PRK05439 pantothenate kinase; 96.4 0.027 5.8E-07 48.3 9.4 26 162-187 85-110 (311)
203 PRK07952 DNA replication prote 96.4 0.028 6.1E-07 46.6 9.2 50 150-202 84-135 (244)
204 TIGR01287 nifH nitrogenase iro 96.4 0.0022 4.8E-08 54.0 2.8 24 164-187 1-24 (275)
205 PF13521 AAA_28: AAA domain; P 96.4 0.0024 5.2E-08 49.4 2.8 21 166-186 2-22 (163)
206 TIGR01351 adk adenylate kinase 96.4 0.0046 9.9E-08 50.0 4.5 22 166-187 2-23 (210)
207 PRK05201 hslU ATP-dependent pr 96.4 0.0088 1.9E-07 53.2 6.5 46 142-187 15-74 (443)
208 TIGR02238 recomb_DMC1 meiotic 96.4 0.019 4.2E-07 49.4 8.5 58 162-221 95-156 (313)
209 TIGR02880 cbbX_cfxQ probable R 96.4 0.0096 2.1E-07 50.5 6.6 45 143-187 23-82 (284)
210 PRK06645 DNA polymerase III su 96.4 0.0048 1E-07 56.5 4.9 46 142-187 21-67 (507)
211 PF00005 ABC_tran: ABC transpo 96.4 0.0028 6.2E-08 47.2 2.9 25 163-187 11-35 (137)
212 COG1484 DnaC DNA replication p 96.4 0.024 5.3E-07 47.3 8.6 39 162-203 104-142 (254)
213 COG0563 Adk Adenylate kinase a 96.4 0.0032 6.8E-08 49.7 3.1 23 165-187 2-24 (178)
214 TIGR01313 therm_gnt_kin carboh 96.4 0.0025 5.5E-08 49.2 2.6 22 166-187 1-22 (163)
215 PRK14954 DNA polymerase III su 96.4 0.005 1.1E-07 57.7 4.9 46 142-187 16-62 (620)
216 COG0194 Gmk Guanylate kinase [ 96.4 0.0052 1.1E-07 48.4 4.2 25 163-187 4-28 (191)
217 COG1222 RPT1 ATP-dependent 26S 96.4 0.0057 1.2E-07 52.8 4.8 44 144-187 153-209 (406)
218 PRK12323 DNA polymerase III su 96.4 0.0046 9.9E-08 57.8 4.6 46 142-187 16-62 (700)
219 PF01926 MMR_HSR1: 50S ribosom 96.4 0.0032 6.9E-08 45.6 3.0 21 166-186 2-22 (116)
220 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0065 1.4E-07 45.5 4.6 26 162-187 21-46 (133)
221 PF03193 DUF258: Protein of un 96.4 0.0051 1.1E-07 47.5 4.2 36 149-187 24-59 (161)
222 PRK06851 hypothetical protein; 96.3 0.1 2.2E-06 45.8 12.6 39 145-187 200-238 (367)
223 TIGR01425 SRP54_euk signal rec 96.3 0.035 7.5E-07 49.7 9.8 26 162-187 99-124 (429)
224 PRK08691 DNA polymerase III su 96.3 0.0046 1E-07 58.2 4.5 46 142-187 16-62 (709)
225 TIGR00041 DTMP_kinase thymidyl 96.3 0.012 2.6E-07 46.7 6.4 24 164-187 4-27 (195)
226 COG1100 GTPase SAR1 and relate 96.3 0.0028 6.1E-08 51.1 2.7 24 164-187 6-29 (219)
227 PRK09354 recA recombinase A; P 96.3 0.016 3.5E-07 50.4 7.4 44 162-208 59-102 (349)
228 PRK12339 2-phosphoglycerate ki 96.3 0.0044 9.6E-08 49.7 3.7 25 163-187 3-27 (197)
229 PRK05057 aroK shikimate kinase 96.3 0.004 8.7E-08 48.8 3.4 24 164-187 5-28 (172)
230 COG0237 CoaE Dephospho-CoA kin 96.3 0.004 8.7E-08 50.0 3.3 23 163-185 2-24 (201)
231 COG2019 AdkA Archaeal adenylat 96.3 0.0039 8.5E-08 48.2 3.1 46 163-221 4-49 (189)
232 cd04139 RalA_RalB RalA/RalB su 96.3 0.0035 7.5E-08 47.8 2.9 23 165-187 2-24 (164)
233 PRK04182 cytidylate kinase; Pr 96.3 0.0042 9.1E-08 48.5 3.4 23 165-187 2-24 (180)
234 PRK14969 DNA polymerase III su 96.3 0.0063 1.4E-07 56.1 5.0 46 142-187 16-62 (527)
235 PLN02165 adenylate isopentenyl 96.3 0.0062 1.3E-07 52.5 4.6 30 158-187 38-67 (334)
236 PRK14952 DNA polymerase III su 96.3 0.0064 1.4E-07 56.6 4.9 46 142-187 13-59 (584)
237 PLN02924 thymidylate kinase 96.3 0.028 6E-07 45.9 8.2 53 163-217 16-68 (220)
238 COG1703 ArgK Putative periplas 96.2 0.0066 1.4E-07 51.2 4.5 60 151-211 37-98 (323)
239 PF06309 Torsin: Torsin; Inte 96.2 0.011 2.3E-07 43.8 5.0 46 142-187 25-77 (127)
240 PLN02200 adenylate kinase fami 96.2 0.0051 1.1E-07 50.7 3.8 26 162-187 42-67 (234)
241 PRK06761 hypothetical protein; 96.2 0.0098 2.1E-07 50.3 5.5 24 164-187 4-27 (282)
242 PRK06620 hypothetical protein; 96.2 0.0041 8.8E-08 50.6 3.1 46 142-187 17-68 (214)
243 cd02027 APSK Adenosine 5'-phos 96.2 0.0042 9.1E-08 47.4 3.0 23 165-187 1-23 (149)
244 cd02117 NifH_like This family 96.2 0.0038 8.3E-08 50.5 2.9 24 164-187 1-24 (212)
245 cd01131 PilT Pilus retraction 96.2 0.0078 1.7E-07 48.2 4.6 24 164-187 2-25 (198)
246 PF13245 AAA_19: Part of AAA d 96.2 0.015 3.2E-07 39.1 5.2 26 162-187 9-35 (76)
247 PRK13946 shikimate kinase; Pro 96.2 0.0051 1.1E-07 48.6 3.5 25 163-187 10-34 (184)
248 TIGR02640 gas_vesic_GvpN gas v 96.2 0.018 3.9E-07 48.3 6.9 37 149-187 9-45 (262)
249 cd01862 Rab7 Rab7 subfamily. 96.2 0.0039 8.5E-08 48.0 2.8 22 165-186 2-23 (172)
250 PRK00279 adk adenylate kinase; 96.2 0.0084 1.8E-07 48.6 4.8 23 165-187 2-24 (215)
251 PRK13948 shikimate kinase; Pro 96.2 0.0055 1.2E-07 48.5 3.6 26 162-187 9-34 (182)
252 PRK14529 adenylate kinase; Pro 96.2 0.024 5.3E-07 46.3 7.4 22 166-187 3-24 (223)
253 TIGR02173 cyt_kin_arch cytidyl 96.2 0.0053 1.1E-07 47.5 3.4 23 165-187 2-24 (171)
254 PF13604 AAA_30: AAA domain; P 96.2 0.02 4.4E-07 45.8 6.8 34 154-187 9-42 (196)
255 cd04163 Era Era subfamily. Er 96.2 0.0049 1.1E-07 46.7 3.2 24 163-186 3-26 (168)
256 cd00820 PEPCK_HprK Phosphoenol 96.1 0.0054 1.2E-07 44.1 3.1 22 163-184 15-36 (107)
257 TIGR01241 FtsH_fam ATP-depende 96.1 0.0072 1.6E-07 55.4 4.6 46 142-187 55-112 (495)
258 PRK13236 nitrogenase reductase 96.1 0.0051 1.1E-07 52.5 3.5 28 160-187 3-30 (296)
259 PRK13232 nifH nitrogenase redu 96.1 0.0043 9.2E-08 52.3 2.9 24 164-187 2-25 (273)
260 PRK07940 DNA polymerase III su 96.1 0.0088 1.9E-07 53.1 5.0 46 142-187 5-60 (394)
261 PRK09111 DNA polymerase III su 96.1 0.0077 1.7E-07 56.3 4.8 46 142-187 24-70 (598)
262 PRK04301 radA DNA repair and r 96.1 0.017 3.6E-07 49.9 6.6 56 162-219 101-160 (317)
263 COG0003 ArsA Predicted ATPase 96.1 0.011 2.4E-07 50.9 5.5 48 163-213 2-49 (322)
264 smart00173 RAS Ras subfamily o 96.1 0.0048 1E-07 47.2 3.0 23 165-187 2-24 (164)
265 COG1120 FepC ABC-type cobalami 96.1 0.0049 1.1E-07 51.3 3.1 26 162-187 27-52 (258)
266 PRK13407 bchI magnesium chelat 96.1 0.0077 1.7E-07 52.2 4.5 45 142-186 8-52 (334)
267 PRK09825 idnK D-gluconate kina 96.1 0.0055 1.2E-07 48.2 3.3 24 164-187 4-27 (176)
268 cd04119 RJL RJL (RabJ-Like) su 96.1 0.0048 1E-07 47.2 2.9 23 165-187 2-24 (168)
269 PF07693 KAP_NTPase: KAP famil 96.1 0.018 3.8E-07 49.5 6.7 73 148-221 2-82 (325)
270 PRK14493 putative bifunctional 96.1 0.006 1.3E-07 51.5 3.6 24 164-187 2-25 (274)
271 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.1 0.005 1.1E-07 49.9 3.2 26 162-187 29-54 (218)
272 PRK13230 nitrogenase reductase 96.1 0.0046 1E-07 52.2 3.0 24 164-187 2-25 (279)
273 COG1124 DppF ABC-type dipeptid 96.1 0.0084 1.8E-07 49.1 4.3 26 162-187 32-57 (252)
274 TIGR00064 ftsY signal recognit 96.1 0.01 2.3E-07 50.0 5.1 26 162-187 71-96 (272)
275 cd04155 Arl3 Arl3 subfamily. 96.1 0.0046 1E-07 47.8 2.8 25 162-186 13-37 (173)
276 cd03225 ABC_cobalt_CbiO_domain 96.1 0.0052 1.1E-07 49.5 3.2 26 162-187 26-51 (211)
277 TIGR02236 recomb_radA DNA repa 96.1 0.019 4.2E-07 49.2 6.8 56 162-219 94-153 (310)
278 cd03116 MobB Molybdenum is an 96.1 0.0064 1.4E-07 47.0 3.4 24 164-187 2-25 (159)
279 PRK08356 hypothetical protein; 96.1 0.0057 1.2E-07 48.8 3.2 22 163-184 5-26 (195)
280 PF02562 PhoH: PhoH-like prote 96.1 0.012 2.6E-07 47.4 5.1 50 149-201 7-56 (205)
281 TIGR00362 DnaA chromosomal rep 96.1 0.032 6.9E-07 49.8 8.3 44 144-187 113-160 (405)
282 cd02040 NifH NifH gene encodes 96.1 0.0048 1E-07 51.6 2.9 24 164-187 2-25 (270)
283 PRK08099 bifunctional DNA-bind 96.1 0.0055 1.2E-07 54.5 3.4 26 162-187 218-243 (399)
284 PRK14088 dnaA chromosomal repl 96.1 0.033 7E-07 50.3 8.4 57 144-202 108-168 (440)
285 cd02022 DPCK Dephospho-coenzym 96.0 0.005 1.1E-07 48.5 2.8 21 165-185 1-21 (179)
286 PRK14737 gmk guanylate kinase; 96.0 0.0067 1.4E-07 48.2 3.5 25 163-187 4-28 (186)
287 TIGR01166 cbiO cobalt transpor 96.0 0.0057 1.2E-07 48.5 3.1 26 162-187 17-42 (190)
288 TIGR00960 3a0501s02 Type II (G 96.0 0.0056 1.2E-07 49.6 3.1 26 162-187 28-53 (216)
289 TIGR00231 small_GTP small GTP- 96.0 0.0051 1.1E-07 46.0 2.7 23 165-187 3-25 (161)
290 COG1136 SalX ABC-type antimicr 96.0 0.0059 1.3E-07 49.8 3.2 26 162-187 30-55 (226)
291 cd04159 Arl10_like Arl10-like 96.0 0.0048 1E-07 46.4 2.5 21 166-186 2-22 (159)
292 cd00154 Rab Rab family. Rab G 96.0 0.0056 1.2E-07 46.0 2.9 22 166-187 3-24 (159)
293 PLN02796 D-glycerate 3-kinase 96.0 0.0058 1.3E-07 52.9 3.3 26 162-187 99-124 (347)
294 PRK14532 adenylate kinase; Pro 96.0 0.0059 1.3E-07 48.3 3.1 22 166-187 3-24 (188)
295 cd01122 GP4d_helicase GP4d_hel 96.0 0.057 1.2E-06 45.2 9.2 51 163-217 30-80 (271)
296 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.006 1.3E-07 42.0 2.8 23 165-187 1-23 (99)
297 smart00175 RAB Rab subfamily o 96.0 0.0054 1.2E-07 46.8 2.8 23 165-187 2-24 (164)
298 TIGR03881 KaiC_arch_4 KaiC dom 96.0 0.025 5.5E-07 46.1 6.9 41 162-205 19-59 (229)
299 PRK05342 clpX ATP-dependent pr 96.0 0.0094 2E-07 53.2 4.6 47 141-187 70-132 (412)
300 PF01695 IstB_IS21: IstB-like 96.0 0.0058 1.3E-07 48.2 2.9 39 162-203 46-84 (178)
301 PRK13768 GTPase; Provisional 96.0 0.0076 1.6E-07 50.3 3.8 24 164-187 3-26 (253)
302 PRK08154 anaerobic benzoate ca 96.0 0.011 2.3E-07 50.9 4.8 26 162-187 132-157 (309)
303 cd03229 ABC_Class3 This class 96.0 0.0064 1.4E-07 47.8 3.2 26 162-187 25-50 (178)
304 KOG0989 Replication factor C, 96.0 0.012 2.7E-07 49.7 5.0 64 141-205 35-99 (346)
305 TIGR03574 selen_PSTK L-seryl-t 96.0 0.0055 1.2E-07 50.9 2.9 23 165-187 1-23 (249)
306 PRK14738 gmk guanylate kinase; 96.0 0.0069 1.5E-07 48.9 3.4 25 162-186 12-36 (206)
307 PRK14950 DNA polymerase III su 96.0 0.011 2.4E-07 55.3 5.2 46 142-187 16-62 (585)
308 TIGR00750 lao LAO/AO transport 96.0 0.017 3.6E-07 49.5 6.0 37 151-187 20-58 (300)
309 PRK03731 aroL shikimate kinase 96.0 0.0069 1.5E-07 47.1 3.3 24 164-187 3-26 (171)
310 COG1763 MobB Molybdopterin-gua 96.0 0.0073 1.6E-07 46.7 3.3 25 163-187 2-26 (161)
311 cd04138 H_N_K_Ras_like H-Ras/N 96.0 0.006 1.3E-07 46.3 2.9 23 165-187 3-25 (162)
312 cd01124 KaiC KaiC is a circadi 96.0 0.0081 1.8E-07 47.2 3.7 43 166-213 2-44 (187)
313 COG1126 GlnQ ABC-type polar am 96.0 0.0066 1.4E-07 49.0 3.1 36 162-201 27-62 (240)
314 cd04153 Arl5_Arl8 Arl5/Arl8 su 96.0 0.01 2.2E-07 46.2 4.3 34 153-186 5-38 (174)
315 PRK09112 DNA polymerase III su 96.0 0.014 3.1E-07 51.0 5.6 46 142-187 23-69 (351)
316 PF05673 DUF815: Protein of un 96.0 0.029 6.3E-07 46.3 6.9 46 142-187 27-76 (249)
317 TIGR02528 EutP ethanolamine ut 96.0 0.0053 1.1E-07 45.9 2.5 23 165-187 2-24 (142)
318 PF10662 PduV-EutP: Ethanolami 96.0 0.0064 1.4E-07 46.0 2.9 24 164-187 2-25 (143)
319 smart00072 GuKc Guanylate kina 96.0 0.009 1.9E-07 47.2 3.9 25 163-187 2-26 (184)
320 cd03261 ABC_Org_Solvent_Resist 96.0 0.0064 1.4E-07 49.9 3.1 26 162-187 25-50 (235)
321 PRK13233 nifH nitrogenase redu 96.0 0.0059 1.3E-07 51.4 3.0 24 164-187 3-26 (275)
322 cd03238 ABC_UvrA The excision 96.0 0.0066 1.4E-07 47.8 3.1 25 162-186 20-44 (176)
323 cd04113 Rab4 Rab4 subfamily. 95.9 0.0062 1.4E-07 46.5 2.9 23 165-187 2-24 (161)
324 cd00876 Ras Ras family. The R 95.9 0.0062 1.3E-07 46.1 2.8 21 166-186 2-22 (160)
325 cd03269 ABC_putative_ATPase Th 95.9 0.0067 1.5E-07 48.9 3.2 26 162-187 25-50 (210)
326 cd03263 ABC_subfamily_A The AB 95.9 0.0066 1.4E-07 49.2 3.2 26 162-187 27-52 (220)
327 COG1116 TauB ABC-type nitrate/ 95.9 0.0065 1.4E-07 50.0 3.0 26 162-187 28-53 (248)
328 cd01898 Obg Obg subfamily. Th 95.9 0.006 1.3E-07 46.9 2.7 21 166-186 3-23 (170)
329 PRK06305 DNA polymerase III su 95.9 0.013 2.8E-07 53.0 5.2 46 142-187 17-63 (451)
330 PF14532 Sigma54_activ_2: Sigm 95.9 0.0065 1.4E-07 45.7 2.8 43 145-187 1-45 (138)
331 cd03293 ABC_NrtD_SsuB_transpor 95.9 0.0068 1.5E-07 49.2 3.2 26 162-187 29-54 (220)
332 PRK01184 hypothetical protein; 95.9 0.0068 1.5E-07 47.8 3.0 22 164-186 2-23 (184)
333 PTZ00035 Rad51 protein; Provis 95.9 0.056 1.2E-06 47.0 8.9 58 162-221 117-178 (337)
334 smart00178 SAR Sar1p-like memb 95.9 0.013 2.8E-07 46.2 4.6 36 151-186 4-40 (184)
335 TIGR02673 FtsE cell division A 95.9 0.0069 1.5E-07 48.9 3.1 26 162-187 27-52 (214)
336 TIGR02315 ABC_phnC phosphonate 95.9 0.0068 1.5E-07 50.0 3.1 26 162-187 27-52 (243)
337 cd03297 ABC_ModC_molybdenum_tr 95.9 0.0074 1.6E-07 48.8 3.3 26 161-187 22-47 (214)
338 PRK14531 adenylate kinase; Pro 95.9 0.0082 1.8E-07 47.4 3.5 24 164-187 3-26 (183)
339 TIGR01243 CDC48 AAA family ATP 95.9 0.0091 2E-07 57.4 4.4 45 143-187 179-236 (733)
340 PF02374 ArsA_ATPase: Anion-tr 95.9 0.017 3.6E-07 49.6 5.6 24 164-187 2-25 (305)
341 PRK13541 cytochrome c biogenes 95.9 0.0072 1.6E-07 48.2 3.2 26 162-187 25-50 (195)
342 PF00308 Bac_DnaA: Bacterial d 95.9 0.031 6.7E-07 45.6 6.9 25 163-187 34-58 (219)
343 cd03259 ABC_Carb_Solutes_like 95.9 0.0073 1.6E-07 48.8 3.2 26 162-187 25-50 (213)
344 TIGR02239 recomb_RAD51 DNA rep 95.9 0.064 1.4E-06 46.3 9.1 57 162-220 95-155 (316)
345 PRK13235 nifH nitrogenase redu 95.9 0.0063 1.4E-07 51.3 2.9 24 164-187 2-25 (274)
346 PHA02244 ATPase-like protein 95.9 0.021 4.6E-07 50.0 6.1 36 150-187 108-143 (383)
347 PRK09435 membrane ATPase/prote 95.9 0.027 5.9E-07 48.8 6.8 36 152-187 43-80 (332)
348 PF01078 Mg_chelatase: Magnesi 95.9 0.017 3.7E-07 46.4 5.1 43 142-186 3-45 (206)
349 PRK08939 primosomal protein Dn 95.9 0.022 4.8E-07 48.9 6.2 55 146-203 135-193 (306)
350 cd03222 ABC_RNaseL_inhibitor T 95.9 0.0072 1.6E-07 47.6 3.0 26 162-187 24-49 (177)
351 PRK10584 putative ABC transpor 95.9 0.0074 1.6E-07 49.3 3.2 26 162-187 35-60 (228)
352 PF00406 ADK: Adenylate kinase 95.9 0.0069 1.5E-07 46.2 2.8 20 168-187 1-20 (151)
353 cd03256 ABC_PhnC_transporter A 95.9 0.0072 1.6E-07 49.7 3.1 26 162-187 26-51 (241)
354 PRK06921 hypothetical protein; 95.9 0.049 1.1E-06 45.8 8.2 39 162-203 116-155 (266)
355 cd01864 Rab19 Rab19 subfamily. 95.9 0.007 1.5E-07 46.5 2.9 24 163-186 3-26 (165)
356 PRK13231 nitrogenase reductase 95.9 0.0073 1.6E-07 50.5 3.2 24 164-187 3-26 (264)
357 PRK08533 flagellar accessory p 95.9 0.03 6.4E-07 46.0 6.7 49 162-215 23-71 (230)
358 cd01878 HflX HflX subfamily. 95.9 0.013 2.9E-07 46.8 4.6 26 162-187 40-65 (204)
359 PRK13976 thymidylate kinase; P 95.9 0.049 1.1E-06 44.1 7.8 23 165-187 2-24 (209)
360 cd03292 ABC_FtsE_transporter F 95.9 0.0077 1.7E-07 48.6 3.2 26 162-187 26-51 (214)
361 cd03264 ABC_drug_resistance_li 95.8 0.0068 1.5E-07 48.9 2.8 23 165-187 27-49 (211)
362 cd01673 dNK Deoxyribonucleosid 95.8 0.007 1.5E-07 48.0 2.9 23 165-187 1-23 (193)
363 PF03215 Rad17: Rad17 cell cyc 95.8 0.013 2.9E-07 53.7 5.0 53 144-201 21-78 (519)
364 cd03260 ABC_PstB_phosphate_tra 95.8 0.0078 1.7E-07 49.1 3.2 25 162-186 25-49 (227)
365 cd03235 ABC_Metallic_Cations A 95.8 0.0074 1.6E-07 48.7 3.0 26 162-187 24-49 (213)
366 COG1419 FlhF Flagellar GTP-bin 95.8 0.14 2.9E-06 45.3 10.9 55 147-202 183-241 (407)
367 TIGR00017 cmk cytidylate kinas 95.8 0.0089 1.9E-07 48.7 3.5 24 164-187 3-26 (217)
368 TIGR01281 DPOR_bchL light-inde 95.8 0.0071 1.5E-07 50.7 2.9 23 165-187 2-24 (268)
369 cd03265 ABC_DrrA DrrA is the A 95.8 0.008 1.7E-07 48.8 3.2 26 162-187 25-50 (220)
370 PRK12422 chromosomal replicati 95.8 0.035 7.7E-07 50.1 7.6 25 163-187 141-165 (445)
371 cd03226 ABC_cobalt_CbiO_domain 95.8 0.0079 1.7E-07 48.3 3.1 26 162-187 25-50 (205)
372 PHA02530 pseT polynucleotide k 95.8 0.0089 1.9E-07 50.9 3.6 24 164-187 3-26 (300)
373 PRK14490 putative bifunctional 95.8 0.017 3.8E-07 50.8 5.5 25 163-187 5-29 (369)
374 COG3899 Predicted ATPase [Gene 95.8 0.035 7.6E-07 54.2 8.0 44 144-187 2-48 (849)
375 cd03296 ABC_CysA_sulfate_impor 95.8 0.0079 1.7E-07 49.5 3.1 26 162-187 27-52 (239)
376 PF10443 RNA12: RNA12 protein; 95.8 0.019 4E-07 51.0 5.5 71 147-221 1-72 (431)
377 cd01130 VirB11-like_ATPase Typ 95.8 0.014 3.1E-07 46.2 4.5 38 149-187 12-49 (186)
378 TIGR02211 LolD_lipo_ex lipopro 95.8 0.0081 1.8E-07 48.8 3.2 26 162-187 30-55 (221)
379 cd03114 ArgK-like The function 95.8 0.0077 1.7E-07 46.0 2.8 23 165-187 1-23 (148)
380 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.048 1E-06 44.9 7.8 49 162-215 20-68 (237)
381 PRK09183 transposase/IS protei 95.8 0.0084 1.8E-07 50.2 3.3 25 163-187 102-126 (259)
382 PRK02496 adk adenylate kinase; 95.8 0.0086 1.9E-07 47.2 3.2 23 165-187 3-25 (184)
383 PRK10416 signal recognition pa 95.8 0.0099 2.1E-07 51.3 3.8 26 162-187 113-138 (318)
384 PF08298 AAA_PrkA: PrkA AAA do 95.8 0.016 3.5E-07 50.2 5.0 46 142-187 61-112 (358)
385 PRK14974 cell division protein 95.8 0.018 4E-07 49.9 5.5 26 162-187 139-164 (336)
386 cd04136 Rap_like Rap-like subf 95.8 0.0079 1.7E-07 45.9 2.9 22 165-186 3-24 (163)
387 cd01876 YihA_EngB The YihA (En 95.8 0.0071 1.5E-07 46.0 2.7 19 166-184 2-20 (170)
388 TIGR03864 PQQ_ABC_ATP ABC tran 95.8 0.0082 1.8E-07 49.3 3.2 26 162-187 26-51 (236)
389 cd04124 RabL2 RabL2 subfamily. 95.8 0.008 1.7E-07 46.1 2.9 21 166-186 3-23 (161)
390 PRK14528 adenylate kinase; Pro 95.8 0.01 2.2E-07 47.1 3.5 24 164-187 2-25 (186)
391 TIGR03600 phage_DnaB phage rep 95.8 1.3 2.9E-05 39.6 17.5 55 162-220 193-247 (421)
392 PRK07764 DNA polymerase III su 95.8 0.013 2.9E-07 56.6 4.9 46 142-187 15-61 (824)
393 cd04171 SelB SelB subfamily. 95.8 0.0082 1.8E-07 45.7 2.9 21 165-185 2-22 (164)
394 cd04160 Arfrp1 Arfrp1 subfamil 95.8 0.0085 1.8E-07 46.0 3.0 21 166-186 2-22 (167)
395 PRK14953 DNA polymerase III su 95.8 0.015 3.4E-07 53.0 5.1 46 142-187 16-62 (486)
396 TIGR03608 L_ocin_972_ABC putat 95.8 0.0089 1.9E-07 47.9 3.2 25 163-187 24-48 (206)
397 PRK10247 putative ABC transpor 95.8 0.0088 1.9E-07 48.8 3.2 26 162-187 32-57 (225)
398 PRK10865 protein disaggregatio 95.8 0.024 5.2E-07 55.3 6.7 47 141-187 567-622 (857)
399 KOG0730 AAA+-type ATPase [Post 95.8 0.039 8.5E-07 51.2 7.6 51 142-195 434-497 (693)
400 PRK13538 cytochrome c biogenes 95.8 0.0088 1.9E-07 48.0 3.1 26 162-187 26-51 (204)
401 cd00879 Sar1 Sar1 subfamily. 95.8 0.0078 1.7E-07 47.4 2.8 25 162-186 18-42 (190)
402 cd03257 ABC_NikE_OppD_transpor 95.8 0.0085 1.8E-07 48.8 3.1 26 162-187 30-55 (228)
403 cd02026 PRK Phosphoribulokinas 95.8 0.0075 1.6E-07 50.9 2.8 23 165-187 1-23 (273)
404 PRK07471 DNA polymerase III su 95.8 0.02 4.3E-07 50.4 5.5 46 142-187 19-65 (365)
405 PRK11629 lolD lipoprotein tran 95.7 0.0089 1.9E-07 49.0 3.2 26 162-187 34-59 (233)
406 TIGR00602 rad24 checkpoint pro 95.7 0.013 2.8E-07 55.0 4.6 46 142-187 84-134 (637)
407 cd03258 ABC_MetN_methionine_tr 95.7 0.0089 1.9E-07 49.0 3.2 26 162-187 30-55 (233)
408 cd00878 Arf_Arl Arf (ADP-ribos 95.7 0.0079 1.7E-07 45.8 2.7 22 166-187 2-23 (158)
409 cd03237 ABC_RNaseL_inhibitor_d 95.7 0.0089 1.9E-07 49.6 3.2 25 163-187 25-49 (246)
410 PRK15177 Vi polysaccharide exp 95.7 0.009 1.9E-07 48.4 3.1 26 162-187 12-37 (213)
411 cd03224 ABC_TM1139_LivF_branch 95.7 0.0092 2E-07 48.4 3.2 26 162-187 25-50 (222)
412 PLN00020 ribulose bisphosphate 95.7 0.016 3.5E-07 50.7 4.8 27 161-187 146-172 (413)
413 COG0714 MoxR-like ATPases [Gen 95.7 0.037 8E-07 47.9 7.1 62 143-212 25-86 (329)
414 cd01121 Sms Sms (bacterial rad 95.7 0.062 1.4E-06 47.4 8.5 40 162-204 81-120 (372)
415 cd04123 Rab21 Rab21 subfamily. 95.7 0.0088 1.9E-07 45.4 2.9 23 165-187 2-24 (162)
416 COG0468 RecA RecA/RadA recombi 95.7 0.029 6.4E-07 47.3 6.2 49 162-213 59-107 (279)
417 PRK06526 transposase; Provisio 95.7 0.0089 1.9E-07 49.9 3.1 26 162-187 97-122 (254)
418 PRK11248 tauB taurine transpor 95.7 0.0091 2E-07 49.8 3.2 26 162-187 26-51 (255)
419 cd03301 ABC_MalK_N The N-termi 95.7 0.0096 2.1E-07 48.0 3.2 26 162-187 25-50 (213)
420 PRK06067 flagellar accessory p 95.7 0.036 7.9E-07 45.4 6.7 48 162-214 24-71 (234)
421 cd01858 NGP_1 NGP-1. Autoanti 95.7 0.02 4.3E-07 43.9 4.8 42 146-187 82-126 (157)
422 TIGR02016 BchX chlorophyllide 95.7 0.0084 1.8E-07 51.2 2.9 24 164-187 1-24 (296)
423 COG1223 Predicted ATPase (AAA+ 95.7 0.016 3.4E-07 48.2 4.3 46 142-187 121-175 (368)
424 cd04177 RSR1 RSR1 subgroup. R 95.7 0.0091 2E-07 46.1 2.9 23 165-187 3-25 (168)
425 cd02029 PRK_like Phosphoribulo 95.7 0.054 1.2E-06 45.4 7.6 23 165-187 1-23 (277)
426 TIGR00678 holB DNA polymerase 95.7 0.067 1.4E-06 42.3 7.9 35 153-187 3-38 (188)
427 TIGR01184 ntrCD nitrate transp 95.7 0.0096 2.1E-07 48.8 3.2 25 163-187 11-35 (230)
428 PRK00149 dnaA chromosomal repl 95.7 0.041 8.8E-07 49.8 7.5 44 144-187 125-172 (450)
429 cd00157 Rho Rho (Ras homology) 95.7 0.0092 2E-07 45.9 2.9 22 166-187 3-24 (171)
430 TIGR02770 nickel_nikD nickel i 95.7 0.0093 2E-07 48.8 3.1 26 162-187 11-36 (230)
431 PLN02348 phosphoribulokinase 95.7 0.012 2.7E-07 51.8 3.9 36 152-187 37-73 (395)
432 COG0703 AroK Shikimate kinase 95.7 0.012 2.6E-07 45.9 3.4 23 165-187 4-26 (172)
433 PRK11124 artP arginine transpo 95.7 0.0099 2.1E-07 49.0 3.2 26 162-187 27-52 (242)
434 cd03218 ABC_YhbG The ABC trans 95.7 0.01 2.2E-07 48.6 3.1 26 162-187 25-50 (232)
435 PRK13974 thymidylate kinase; P 95.7 0.071 1.5E-06 43.1 8.1 53 164-217 4-59 (212)
436 cd02032 Bchl_like This family 95.7 0.0091 2E-07 50.0 3.0 23 165-187 2-24 (267)
437 PLN02318 phosphoribulokinase/u 95.7 0.014 3.1E-07 54.0 4.4 27 161-187 63-89 (656)
438 cd03219 ABC_Mj1267_LivG_branch 95.6 0.0094 2E-07 48.9 3.0 26 162-187 25-50 (236)
439 PF00071 Ras: Ras family; Int 95.6 0.01 2.2E-07 45.3 3.0 22 166-187 2-23 (162)
440 cd04137 RheB Rheb (Ras Homolog 95.6 0.012 2.5E-07 45.9 3.3 23 164-186 2-24 (180)
441 PRK15453 phosphoribulokinase; 95.6 0.012 2.6E-07 49.6 3.5 26 162-187 4-29 (290)
442 cd04140 ARHI_like ARHI subfami 95.6 0.01 2.2E-07 45.7 2.9 22 165-186 3-24 (165)
443 PRK13540 cytochrome c biogenes 95.6 0.011 2.4E-07 47.3 3.2 26 162-187 26-51 (200)
444 TIGR00101 ureG urease accessor 95.6 0.013 2.8E-07 47.0 3.6 24 164-187 2-25 (199)
445 PRK06647 DNA polymerase III su 95.6 0.018 3.8E-07 53.6 4.9 46 142-187 16-62 (563)
446 PRK14965 DNA polymerase III su 95.6 0.019 4.2E-07 53.5 5.2 46 142-187 16-62 (576)
447 TIGR00382 clpX endopeptidase C 95.6 0.024 5.3E-07 50.5 5.5 47 141-187 76-140 (413)
448 cd03246 ABCC_Protease_Secretio 95.6 0.012 2.5E-07 46.0 3.2 26 162-187 27-52 (173)
449 cd01860 Rab5_related Rab5-rela 95.6 0.01 2.2E-07 45.3 2.8 23 165-187 3-25 (163)
450 TIGR01978 sufC FeS assembly AT 95.6 0.011 2.3E-07 48.8 3.1 25 162-186 25-49 (243)
451 cd01129 PulE-GspE PulE/GspE Th 95.6 0.02 4.3E-07 48.1 4.8 43 145-187 62-104 (264)
452 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.012 2.5E-07 44.7 3.0 26 162-187 25-50 (144)
453 cd03295 ABC_OpuCA_Osmoprotecti 95.6 0.011 2.4E-07 48.8 3.2 26 162-187 26-51 (242)
454 cd03232 ABC_PDR_domain2 The pl 95.6 0.011 2.5E-07 47.0 3.1 25 162-186 32-56 (192)
455 cd03262 ABC_HisP_GlnQ_permease 95.6 0.011 2.4E-07 47.6 3.2 26 162-187 25-50 (213)
456 PRK10908 cell division protein 95.6 0.011 2.4E-07 48.0 3.2 26 162-187 27-52 (222)
457 COG1224 TIP49 DNA helicase TIP 95.6 0.032 6.9E-07 48.4 5.9 55 141-196 38-97 (450)
458 PRK00454 engB GTP-binding prot 95.6 0.013 2.8E-07 46.3 3.5 26 161-186 22-47 (196)
459 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.011 2.3E-07 49.1 3.0 24 163-186 30-53 (254)
460 cd03268 ABC_BcrA_bacitracin_re 95.6 0.011 2.5E-07 47.4 3.2 26 162-187 25-50 (208)
461 PRK05973 replicative DNA helic 95.6 0.045 9.7E-07 45.2 6.7 26 162-187 63-88 (237)
462 cd03266 ABC_NatA_sodium_export 95.6 0.011 2.4E-07 47.8 3.1 26 162-187 30-55 (218)
463 PF03796 DnaB_C: DnaB-like hel 95.6 0.094 2E-06 43.7 8.8 55 163-221 19-73 (259)
464 cd04101 RabL4 RabL4 (Rab-like4 95.6 0.01 2.2E-07 45.4 2.8 22 165-186 2-23 (164)
465 TIGR01189 ccmA heme ABC export 95.6 0.012 2.5E-07 47.0 3.2 26 162-187 25-50 (198)
466 KOG1969 DNA replication checkp 95.6 0.029 6.3E-07 52.7 6.0 53 162-220 325-377 (877)
467 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.6 0.01 2.3E-07 45.5 2.8 24 164-187 3-26 (166)
468 PRK08181 transposase; Validate 95.6 0.01 2.2E-07 50.0 2.9 42 156-202 101-142 (269)
469 PRK14245 phosphate ABC transpo 95.6 0.011 2.4E-07 49.0 3.2 24 162-185 28-51 (250)
470 TIGR00455 apsK adenylylsulfate 95.6 0.014 3E-07 46.1 3.5 27 161-187 16-42 (184)
471 PRK14242 phosphate transporter 95.6 0.011 2.5E-07 49.0 3.2 24 162-185 31-54 (253)
472 PRK05537 bifunctional sulfate 95.6 0.024 5.2E-07 52.8 5.6 47 141-187 368-416 (568)
473 COG4240 Predicted kinase [Gene 95.6 0.057 1.2E-06 44.1 6.9 55 162-218 49-103 (300)
474 PRK11034 clpA ATP-dependent Cl 95.6 0.025 5.3E-07 54.4 5.7 46 142-187 458-512 (758)
475 PRK14733 coaE dephospho-CoA ki 95.6 0.021 4.6E-07 46.0 4.6 25 163-187 6-30 (204)
476 PRK13973 thymidylate kinase; P 95.6 0.075 1.6E-06 43.0 7.9 24 164-187 4-27 (213)
477 PRK14948 DNA polymerase III su 95.5 0.021 4.5E-07 53.7 5.1 46 142-187 16-62 (620)
478 cd03278 ABC_SMC_barmotin Barmo 95.5 0.011 2.4E-07 47.3 2.9 21 165-185 24-44 (197)
479 cd01897 NOG NOG1 is a nucleola 95.5 0.011 2.3E-07 45.5 2.8 24 164-187 1-24 (168)
480 PRK14730 coaE dephospho-CoA ki 95.5 0.013 2.9E-07 46.8 3.4 23 164-186 2-24 (195)
481 PRK14247 phosphate ABC transpo 95.5 0.012 2.5E-07 48.9 3.1 26 162-187 28-53 (250)
482 TIGR02324 CP_lyasePhnL phospho 95.5 0.012 2.6E-07 47.9 3.1 26 162-187 33-58 (224)
483 PRK13539 cytochrome c biogenes 95.5 0.012 2.6E-07 47.4 3.2 26 162-187 27-52 (207)
484 TIGR00972 3a0107s01c2 phosphat 95.5 0.011 2.5E-07 48.8 3.1 26 162-187 26-51 (247)
485 PRK09544 znuC high-affinity zi 95.5 0.012 2.6E-07 49.0 3.2 26 162-187 29-54 (251)
486 PRK11247 ssuB aliphatic sulfon 95.5 0.012 2.6E-07 49.2 3.2 26 162-187 37-62 (257)
487 KOG2228 Origin recognition com 95.5 0.038 8.2E-07 47.6 6.1 92 142-236 24-129 (408)
488 PRK04328 hypothetical protein; 95.5 0.035 7.5E-07 46.2 5.9 41 162-205 22-62 (249)
489 PRK06835 DNA replication prote 95.5 0.016 3.4E-07 50.3 3.9 38 164-204 184-221 (329)
490 CHL00176 ftsH cell division pr 95.5 0.025 5.4E-07 53.3 5.5 46 142-187 183-240 (638)
491 KOG0738 AAA+-type ATPase [Post 95.5 0.019 4.2E-07 50.2 4.4 26 162-187 244-269 (491)
492 cd04146 RERG_RasL11_like RERG/ 95.5 0.012 2.6E-07 45.2 2.9 20 166-185 2-21 (165)
493 PRK00089 era GTPase Era; Revie 95.5 0.012 2.5E-07 50.1 3.1 25 162-186 4-28 (292)
494 PRK13185 chlL protochlorophyll 95.5 0.012 2.6E-07 49.3 3.2 24 164-187 3-26 (270)
495 PRK14250 phosphate ABC transpo 95.5 0.012 2.7E-07 48.5 3.1 26 162-187 28-53 (241)
496 TIGR02639 ClpA ATP-dependent C 95.5 0.022 4.9E-07 54.7 5.3 47 141-187 453-508 (731)
497 PRK14087 dnaA chromosomal repl 95.5 0.047 1E-06 49.5 7.0 44 144-187 118-165 (450)
498 cd03252 ABCC_Hemolysin The ABC 95.5 0.013 2.7E-07 48.2 3.1 26 162-187 27-52 (237)
499 cd03230 ABC_DR_subfamily_A Thi 95.5 0.014 2.9E-07 45.7 3.2 26 162-187 25-50 (173)
500 cd03216 ABC_Carb_Monos_I This 95.5 0.014 3E-07 45.2 3.2 26 162-187 25-50 (163)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=2e-30 Score=245.89 Aligned_cols=239 Identities=31% Similarity=0.488 Sum_probs=192.2
Q ss_pred CCCccccccccchhhhhHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHHhHHHHHHHH
Q 038742 1 MGNACSVSFSCDDTISHCLDCITILLPLRTEFQKLIEARNDVQIRVLVAEQRQWRRLQQVQGWLSRVQDVEKEVPRLLAE 80 (243)
Q Consensus 1 m~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~L~~~l~~v~~~l~~a~~~~~~~~~~v~~Wl~~l~~~~~d~ed~ld~ 80 (243)
|++++++. +.++.+.+......+.+.++.+..|+..+..++.++++++.++... ..+..|.+.+++++|+++|+++.
T Consensus 1 ~~~~~s~~--~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~-~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 1 MGACVSFG--VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDL-ERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CCeEEEEe--hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665444 5544444444444446677788899999999999999999887654 68899999999999999999999
Q ss_pred H-HHhh----------------hhhhcCCCCCCchhhhhhHHHHHHHHHHHHHHHhcCCCccccc-cCCCCCCccCCCCC
Q 038742 81 I-IGKE----------------EEILGGFCSGNSIERHKYGKRVVESLKNVQSLRKEGDFKDVAQ-TVPENPVDERPLPP 142 (243)
Q Consensus 81 ~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 142 (243)
+ .+.. +-|+.++|..+....+.+++++-++.+.++.+..++.+..+.. ..|......+|..+
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQS 157 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCc
Confidence 8 3321 1234466777788888899999999999999987776665543 23333444445444
Q ss_pred cc-cccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcc-cCCCCCEEEEEEecCcccHHHHHHHHHHHhc
Q 038742 143 AV-VGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLH-TSNNFDFVIWEVVSRDLQLEKMQESIAKKIA 220 (243)
Q Consensus 143 ~~-vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~ 220 (243)
.. ||.+..++++++.|.+++..++||+||||+||||||+.++|+. . ++.+||.++||+||++|+...|+.+|+..++
T Consensus 158 ~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~-~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 158 ESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKF-DEVGNHFDGVIWVVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred cccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhccc-chhcccCceEEEEEEcccccHHhHHHHHHHHhc
Confidence 44 9999999999999999888999999999999999999999998 6 8999999999999999999999999999988
Q ss_pred C-------CCHHHHHHHHHHHhhcCceEEC
Q 038742 221 F-------SSFHEKAQEIFKTMRNTKFVLL 243 (243)
Q Consensus 221 ~-------~~~~~~~~~l~~~L~~kr~Llv 243 (243)
. .+.++++..|.+.|++||||||
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L~~krfllv 266 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLLEGKRFLLV 266 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHhccCceEEE
Confidence 7 2346899999999999999986
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.74 E-value=2.1e-17 Score=139.99 Aligned_cols=96 Identities=27% Similarity=0.529 Sum_probs=87.4
Q ss_pred cHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhcC---
Q 038742 147 FQSTLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIAF--- 221 (243)
Q Consensus 147 ~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~--- 221 (243)
||.++++|.+.|.+ ++.++|+|+||||+||||||..+|++. .++.+|+.++|+.++..++...++.+|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 68899999999998 689999999999999999999999997 679999999999999999999999999999977
Q ss_pred -----CCHHHHHHHHHHHhhcCceEEC
Q 038742 222 -----SSFHEKAQEIFKTMRNTKFVLL 243 (243)
Q Consensus 222 -----~~~~~~~~~l~~~L~~kr~Llv 243 (243)
.+..+....|++.|.+++||||
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlV 106 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLV 106 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEE
T ss_pred ccccccccccccccchhhhccccceee
Confidence 2577899999999999999986
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.36 E-value=5.6e-12 Score=125.07 Aligned_cols=99 Identities=19% Similarity=0.336 Sum_probs=71.2
Q ss_pred CcccccHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEE---ecCc-----------
Q 038742 142 PAVVGFQSTLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEV---VSRD----------- 205 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~---vs~~----------- 205 (243)
+.++|++..++++..+|.- ++.++|+||||||+||||||+++|+.. ..+|+..+|+. ++..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 4589999999999998853 479999999999999999999999976 78899888763 2211
Q ss_pred cc-HHHHHHHHHHHhcC-CCH-HHHHHHHHHHhhcCceEEC
Q 038742 206 LQ-LEKMQESIAKKIAF-SSF-HEKAQEIFKTMRNTKFVLL 243 (243)
Q Consensus 206 ~~-~~~i~~~I~~~l~~-~~~-~~~~~~l~~~L~~kr~Llv 243 (243)
++ ...++.+++.++.. .+. ......+++.|.+||+|||
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLV 301 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIF 301 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEE
Confidence 11 12345555555432 111 0112567888999999986
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.75 E-value=1.3e-07 Score=83.68 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=72.6
Q ss_pred CCcccccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHH
Q 038742 141 PPAVVGFQSTLDRVWRCLTE----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIA 216 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~ 216 (243)
++.++||++++++|...|.+ .....+-|+|++|+||||+++.++++. ......-..+++......+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 46789999999999998843 344567899999999999999999987 4333223456666666667888999999
Q ss_pred HHhcC-------CCHHHHHHHHHHHhhc
Q 038742 217 KKIAF-------SSFHEKAQEIFKTMRN 237 (243)
Q Consensus 217 ~~l~~-------~~~~~~~~~l~~~L~~ 237 (243)
.++.. .+..++...+.+.+..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDE 135 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 98864 2456677777887764
No 5
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.74 E-value=2.2e-08 Score=83.04 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCc--ccHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRD--LQLEKMQESI 215 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~--~~~~~i~~~I 215 (243)
+-..++|+|++|+|||||++.+|++. ... +|+.++|+++++. +++.++++.|
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~~-~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TKN-HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-ccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence 55789999999999999999999987 433 8999999998887 7999999999
No 6
>PTZ00202 tuzin; Provisional
Probab=98.66 E-value=3.2e-06 Score=74.72 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=65.3
Q ss_pred CCcccccHHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHH
Q 038742 141 PPAVVGFQSTLDRVWRCLTEE---PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
.+.|+||+.+...|...|.+. ..+++.|.|++|+|||||++.+.... ++ .+++ ....+..++++.|+.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-----~~--~qL~--vNprg~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-----GM--PAVF--VDVRGTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-----Cc--eEEE--ECCCCHHHHHHHHHH
Confidence 467999999999999988642 35699999999999999999999765 21 1222 222277999999999
Q ss_pred HhcC---CCHHHHHHHHHHHhh
Q 038742 218 KIAF---SSFHEKAQEIFKTMR 236 (243)
Q Consensus 218 ~l~~---~~~~~~~~~l~~~L~ 236 (243)
+||. ....++...|.+.|.
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl 353 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACR 353 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHH
Confidence 9997 333556666666653
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.64 E-value=3.5e-07 Score=80.15 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=69.2
Q ss_pred CcccccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhcccC-CCC---CEEEEEEecCcccHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTE----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTS-NNF---DFVIWEVVSRDLQLEKMQE 213 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~-~~F---~~~~wv~vs~~~~~~~i~~ 213 (243)
+.++||+++++.|..+|.. .....+-|+|++|+|||++++.++++. ... ... -..+|+......+...++.
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l-~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL-EEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH-HHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 5689999999999999864 345678999999999999999999875 211 111 1356777666667888999
Q ss_pred HHHHHhc---C------CCHHHHHHHHHHHhh
Q 038742 214 SIAKKIA---F------SSFHEKAQEIFKTMR 236 (243)
Q Consensus 214 ~I~~~l~---~------~~~~~~~~~l~~~L~ 236 (243)
.|+.++. . .+..++...+.+.+.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 125 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELN 125 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999883 2 234555666767664
No 8
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.61 E-value=6.4e-08 Score=84.32 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=50.4
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcc--cHHHHHHHHH
Q 038742 154 VWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDL--QLEKMQESIA 216 (243)
Q Consensus 154 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~--~~~~i~~~I~ 216 (243)
+++++.. .+-.-..|+|++|+||||||+.||++. ... ||++++||++++.+ .+.+++++|.
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-TTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-Hhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 4444443 345678999999999999999999987 444 89999999999988 7888998886
No 9
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.42 E-value=6.9e-07 Score=70.33 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=34.0
Q ss_pred ccccHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHhhhcccC
Q 038742 144 VVGFQSTLDRVWRCLT---EEPVGIVGLHGMGGVGKTTLLTQINNSFLHTS 191 (243)
Q Consensus 144 ~vG~~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~ 191 (243)
++||+++.+++...|. ....+.+-|+|.+|+|||+|++.++... ...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~-~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL-AER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH-Hhc
Confidence 7999999999999993 2367899999999999999999999987 444
No 10
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.40 E-value=8.2e-07 Score=66.02 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=57.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhccc--CCCCCEEEEEEecCcccHHHHHHHHHHHhcC-----CCHHHHHHHHHHHh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHT--SNNFDFVIWEVVSRDLQLEKMQESIAKKIAF-----SSFHEKAQEIFKTM 235 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v--~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~-----~~~~~~~~~l~~~L 235 (243)
-+.+.|+|.+|+|||++++.+.+..... ...-..++|+.++...+...+...|+.+++. .+..++...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999986110 0012346799998888999999999999988 25677888888888
Q ss_pred hcCce
Q 038742 236 RNTKF 240 (243)
Q Consensus 236 ~~kr~ 240 (243)
...+.
T Consensus 84 ~~~~~ 88 (131)
T PF13401_consen 84 DRRRV 88 (131)
T ss_dssp HHCTE
T ss_pred HhcCC
Confidence 76654
No 11
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.37 E-value=5.7e-06 Score=73.60 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=57.0
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQE 213 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 213 (243)
+++++.++..+.+...|... ..|.+.|++|+||||+|+.+.+.. .....|+.+.||+++++++..+++.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 34678899999999998764 457779999999999999999987 5556788899999999887766543
No 12
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.36 E-value=1.2e-06 Score=76.84 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=46.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCc--ccHHHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRD--LQLEKMQESIAK 217 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~--~~~~~i~~~I~~ 217 (243)
.-..++|+|++|+|||||++.+++.. . ..||+.++||.+++. .++.++++.|..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg 222 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKG 222 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhc
Confidence 45689999999999999999999986 3 337999999999876 789999999944
No 13
>PRK08118 topology modulation protein; Reviewed
Probab=98.31 E-value=4.1e-07 Score=71.13 Aligned_cols=52 Identities=29% Similarity=0.534 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccC-CCCCEEE----EEEecCcccHHHHHHHHHH
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSFLHTS-NNFDFVI----WEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~~~v~-~~F~~~~----wv~vs~~~~~~~i~~~I~~ 217 (243)
+.|.|+|++|+||||||+.+++.. ... -+||..+ |..+++. ....++.+++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~~ 58 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWKPNWEGVPKE-EQITVQNELVK 58 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhcccCCcCCCHH-HHHHHHHHHhc
Confidence 358999999999999999999997 544 4688888 5555543 44555555554
No 14
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.30 E-value=1.3e-05 Score=67.10 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=41.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhcC
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIAF 221 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~ 221 (243)
....++.|+|++|+|||||++.+++.. .. ..+ ..+|+. +...+..+++..|...++.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~ 97 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKLV-NTRVDAEDLLRMVAADFGL 97 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeeee-CCCCCHHHHHHHHHHHcCC
Confidence 345689999999999999999999986 32 221 223433 3345778899999988876
No 15
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.15 E-value=2.1e-06 Score=69.77 Aligned_cols=44 Identities=30% Similarity=0.423 Sum_probs=37.7
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 144 VVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 144 ~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|+||+.+++.|.+++..+..+.+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 68999999999999988778899999999999999999999975
No 16
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.15 E-value=1e-05 Score=60.41 Aligned_cols=60 Identities=27% Similarity=0.276 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCccc
Q 038742 145 VGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQ 207 (243)
Q Consensus 145 vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~ 207 (243)
.|++..+..+...+.......+-|+|.+|+|||||++.+++.. . ..-..++++..+....
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~ 60 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLE 60 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhh
Confidence 3678888899998887667789999999999999999999986 2 2223456666655443
No 17
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.99 E-value=1.2e-05 Score=65.22 Aligned_cols=50 Identities=26% Similarity=0.320 Sum_probs=35.1
Q ss_pred CcccccHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC
Q 038742 142 PAVVGFQSTLDRVWRCLTE-----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNF 194 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F 194 (243)
++++|.++-++.+.-++.. +.+.-+-.||++|+||||||..|.+.. ..+|
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~ 78 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNF 78 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--E
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCe
Confidence 4589999888876655542 357788999999999999999999986 4555
No 18
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.98 E-value=3.8e-05 Score=68.61 Aligned_cols=46 Identities=30% Similarity=0.341 Sum_probs=39.2
Q ss_pred CcccccHHHHHH---HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDR---VWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..+.. +.+++.......+-++|++|+||||||+.+.+..
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457898887666 8888877777788899999999999999999876
No 19
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00012 Score=64.11 Aligned_cols=94 Identities=15% Similarity=0.177 Sum_probs=74.1
Q ss_pred CcccccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhcccC-CCCCEEEEEEecCcccHHHHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTE----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTS-NNFDFVIWEVVSRDLQLEKMQESIA 216 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~-~~F~~~~wv~vs~~~~~~~i~~~I~ 216 (243)
+.+.+|+++++++...|.. +...-+-|+|.+|+|||+.++.+.+.. +.. ...+ ++.|+.-...++..++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l-~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEEL-EESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHH-HhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 4489999999999988854 233348899999999999999999987 332 2233 68888888889999999999
Q ss_pred HHhcC-----CCHHHHHHHHHHHhhc
Q 038742 217 KKIAF-----SSFHEKAQEIFKTMRN 237 (243)
Q Consensus 217 ~~l~~-----~~~~~~~~~l~~~L~~ 237 (243)
++++. ....+.-..+.+.+..
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSK 120 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHh
Confidence 98855 5567777788888854
No 20
>PF05729 NACHT: NACHT domain
Probab=97.93 E-value=5e-05 Score=58.37 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCC----CCEEEEEEecCccc
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSFLHTSNN----FDFVIWEVVSRDLQ 207 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~----F~~~~wv~vs~~~~ 207 (243)
+++.|.|.+|+||||+++.+.++. ..... +...+|.+.+....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhh
Confidence 578999999999999999999987 43333 45667777655443
No 21
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.89 E-value=0.00046 Score=64.69 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=46.8
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC---EEEEEEec
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFD---FVIWEVVS 203 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~---~~~wv~vs 203 (243)
++++|.+..+..+...+.......+.|+|++|+||||||+.+++.. .....+. ..-|+.++
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEe
Confidence 4588999999998888876667789999999999999999999876 4333332 23566654
No 22
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.81 E-value=2.4e-05 Score=66.92 Aligned_cols=46 Identities=26% Similarity=0.354 Sum_probs=39.3
Q ss_pred CcccccHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-----EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|+|+++.++.|..++.. .....+-++|++|+|||+||+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999988863 345668899999999999999999976
No 23
>PRK07261 topology modulation protein; Provisional
Probab=97.78 E-value=5.4e-05 Score=59.34 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=32.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccC-CCCCEEEEEEecCcccHHHHHHHH
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSFLHTS-NNFDFVIWEVVSRDLQLEKMQESI 215 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~~~v~-~~F~~~~wv~vs~~~~~~~i~~~I 215 (243)
.|.|+|++|+||||||+.+.... ... -+.|...|-.-....+..++...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~~~~~~~~~~~~~~~ 52 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQPNWQERDDDDMIADI 52 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEeccccccCCHHHHHHHH
Confidence 48999999999999999998775 322 245666665433333334443333
No 24
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.76 E-value=2.6e-05 Score=57.13 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999975
No 25
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.71 E-value=0.00013 Score=63.10 Aligned_cols=46 Identities=28% Similarity=0.349 Sum_probs=39.1
Q ss_pred CcccccHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-----EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|+++.++.+..++.. .....+-++|++|+||||||+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 4589999999998887753 345678899999999999999999986
No 26
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.65 E-value=0.00015 Score=62.53 Aligned_cols=62 Identities=18% Similarity=0.128 Sum_probs=44.5
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHh
Q 038742 153 RVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKI 219 (243)
Q Consensus 153 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l 219 (243)
-|.+++..+.+.-+-.||++|+||||||+.+.+.. +++- ..+|..|..-.-..=+++|+++.
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHH
Confidence 34555566788999999999999999999999976 3332 56777776554444456666553
No 27
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.62 E-value=8.5e-05 Score=64.47 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=46.0
Q ss_pred CcccccHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHhhhccc-----CCCCCEEEE
Q 038742 142 PAVVGFQSTLDRVWRCLTE------EPVGIVGLHGMGGVGKTTLLTQINNSFLHT-----SNNFDFVIW 199 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v-----~~~F~~~~w 199 (243)
.+++|.++.++++++++.. ...+++.++|++|+||||||+.+.+.. .. .+.|-..-|
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l-~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL-EEYSKTPEGRRYTFKW 118 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH-hhhcccccCceEEEEe
Confidence 3689999999999999965 246899999999999999999999987 33 224555556
No 28
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.58 E-value=0.00061 Score=65.24 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=58.2
Q ss_pred CCcccccHHHHHHHHHHhcC----C-CceEEEEEcCCCCcHHHHHHHHHhhhccc---CCCCC--EEEEEEecCcccHHH
Q 038742 141 PPAVVGFQSTLDRVWRCLTE----E-PVGIVGLHGMGGVGKTTLLTQINNSFLHT---SNNFD--FVIWEVVSRDLQLEK 210 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~v---~~~F~--~~~wv~vs~~~~~~~ 210 (243)
++.+.|||++++.|...|.. . ...++-|.|++|.|||++++.|.+.. .. ..... .+++|....-.++..
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL-qeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL-QHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH-HHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45678999999999988864 2 33577899999999999999998875 21 11222 145565555557788
Q ss_pred HHHHHHHHhcC
Q 038742 211 MQESIAKKIAF 221 (243)
Q Consensus 211 i~~~I~~~l~~ 221 (243)
++..|..+|..
T Consensus 833 IYqvI~qqL~g 843 (1164)
T PTZ00112 833 AYQVLYKQLFN 843 (1164)
T ss_pred HHHHHHHHHcC
Confidence 88888888844
No 29
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00085 Score=62.47 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=42.9
Q ss_pred CCcccccHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC
Q 038742 141 PPAVVGFQSTLDRVWRCLTE------EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNF 194 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F 194 (243)
+.+.+|.++..+.|++.|-- -+-+++..||++|+|||+|++.|.... ..+|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf 378 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF 378 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE
Confidence 45569999999999998842 256799999999999999999999976 5566
No 30
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0052 Score=57.45 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=41.0
Q ss_pred CCcccccHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 141 PPAVVGFQSTLDRVWRCLTE------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.+.+|+++-++.|++++-- .+-+++..+|++|||||++|+.|....
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence 45679999999999998842 267899999999999999999999987
No 31
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.52 E-value=0.00032 Score=60.73 Aligned_cols=75 Identities=24% Similarity=0.296 Sum_probs=63.8
Q ss_pred CCcccccHHHHHHHHHHhcCCC---ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHH
Q 038742 141 PPAVVGFQSTLDRVWRCLTEEP---VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
.+.+.+|+.+...+..++.++. .+.|-|.|-.|.|||.+.+.+.+.. .. ..+|+++-.+|+.+.++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 3678899999999999998764 3445688999999999999999976 22 3589999999999999999999
Q ss_pred HhcC
Q 038742 218 KIAF 221 (243)
Q Consensus 218 ~l~~ 221 (243)
+++.
T Consensus 79 ~~~~ 82 (438)
T KOG2543|consen 79 KSQL 82 (438)
T ss_pred Hhcc
Confidence 9963
No 32
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.51 E-value=0.00021 Score=58.24 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC
Q 038742 147 FQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR 204 (243)
Q Consensus 147 ~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 204 (243)
.+..++.+..++.......+-|+|..|+||||||+.+++.. .......+++.++.
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHH
Confidence 45577778877766667789999999999999999999986 22333445555443
No 33
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.49 E-value=0.00044 Score=65.74 Aligned_cols=50 Identities=36% Similarity=0.450 Sum_probs=39.8
Q ss_pred CcccccHHHHH---HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC
Q 038742 142 PAVVGFQSTLD---RVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNF 194 (243)
Q Consensus 142 ~~~vG~~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F 194 (243)
++++|.+..+. .+.+.+..++...+-++|++|+||||||+.+++.. ..+|
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f 80 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHF 80 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcc
Confidence 34789888774 56667777777778899999999999999999876 4555
No 34
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.46 E-value=0.0024 Score=54.16 Aligned_cols=94 Identities=14% Similarity=0.224 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHhhhcccCCC-C--CEEEEEEecCcccHHHHHHHHHHHhcC--
Q 038742 150 TLDRVWRCLTEE---PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNN-F--DFVIWEVVSRDLQLEKMQESIAKKIAF-- 221 (243)
Q Consensus 150 ~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~-F--~~~~wv~vs~~~~~~~i~~~I~~~l~~-- 221 (243)
.++.+.++|... ...-+.|||..|+|||++++..........+. - -.++-|.....++...+...|+.+++.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 345555555442 45678999999999999999999876211110 1 136667788889999999999999998
Q ss_pred ---CCHHHHHHHHHHHhhc--CceEEC
Q 038742 222 ---SSFHEKAQEIFKTMRN--TKFVLL 243 (243)
Q Consensus 222 ---~~~~~~~~~l~~~L~~--kr~Llv 243 (243)
.+...+.......|+. -|.|||
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLII 151 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLII 151 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 4445555555556543 455553
No 35
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.45 E-value=0.00061 Score=58.37 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=41.0
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|++..++.+..++.....+.+-++|.+|+||||+|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4478999999999999988766678999999999999999999875
No 36
>PRK06696 uridine kinase; Validated
Probab=97.44 E-value=0.00028 Score=57.72 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 146 GFQSTLDRVWRCLTE---EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 146 G~~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|+.-+++|.+.+.. .+..+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 356667777777753 468899999999999999999999876
No 37
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.44 E-value=0.00019 Score=62.01 Aligned_cols=46 Identities=17% Similarity=0.345 Sum_probs=40.8
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|++..++.+..++..+..+.+-++|++|+||||+|+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999988776678899999999999999998875
No 38
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.43 E-value=0.0014 Score=52.46 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=36.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC-cccHHHHHHHHHHHhcC
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR-DLQLEKMQESIAKKIAF 221 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~-~~~~~~i~~~I~~~l~~ 221 (243)
.+||.++|+.|+||||.+-.+.... ..+ =..+..++... .....+=++..++.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhcc
Confidence 3789999999999999999998887 433 23456666432 22344445556666654
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.40 E-value=0.00038 Score=60.67 Aligned_cols=50 Identities=30% Similarity=0.382 Sum_probs=37.6
Q ss_pred cccccHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC
Q 038742 143 AVVGFQSTL---DRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFD 195 (243)
Q Consensus 143 ~~vG~~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~ 195 (243)
+++|.+.-+ .-|-.++..+++.-.-.||++|+||||||+.+.... ..+|.
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~ 77 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE 77 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE
Confidence 467766533 345566667788888899999999999999999865 55553
No 40
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.001 Score=57.16 Aligned_cols=77 Identities=14% Similarity=0.341 Sum_probs=56.1
Q ss_pred CcccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhhc---ccCCCCCEEEEEE-ecCcccHHHHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTEEP-VGIVGLHGMGGVGKTTLLTQINNSFL---HTSNNFDFVIWEV-VSRDLQLEKMQESIA 216 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~---~v~~~F~~~~wv~-vs~~~~~~~i~~~I~ 216 (243)
.+++|-+...+.+.+.+..++ .+..-++|+.|+||||+|+.++.... ....|+|...|.. -+.......| +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 357899999999999998765 45778999999999999999998641 1245778877766 3444555553 3444
Q ss_pred HHh
Q 038742 217 KKI 219 (243)
Q Consensus 217 ~~l 219 (243)
+.+
T Consensus 83 ~~~ 85 (313)
T PRK05564 83 EEV 85 (313)
T ss_pred HHH
Confidence 533
No 41
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.35 E-value=0.00025 Score=68.67 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=39.7
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++||+.+++.+++.|.....+-+-++|.+|+|||++|+.+....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999987654455699999999999999998875
No 42
>PLN03025 replication factor C subunit; Provisional
Probab=97.35 E-value=0.00069 Score=58.43 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=39.3
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.++.++.|..++...+.+-+-++|++|+||||+|..+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999988888888877766667799999999999999999875
No 43
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.33 E-value=0.00042 Score=57.27 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=22.3
Q ss_pred EEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEE
Q 038742 168 LHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEV 201 (243)
Q Consensus 168 I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~ 201 (243)
|+||+|+||||+++.+.+.. ...-..++-|+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~---~~~~~~~~~vN 31 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL---ESNGRDVYIVN 31 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH---TTT-S-EEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHH---HhccCCceEEE
Confidence 68999999999999999987 33333344454
No 44
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.32 E-value=0.0002 Score=52.59 Aligned_cols=21 Identities=33% Similarity=0.743 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~ 186 (243)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999887
No 45
>PTZ00301 uridine kinase; Provisional
Probab=97.30 E-value=0.00034 Score=56.64 Aligned_cols=25 Identities=32% Similarity=0.654 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 46
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.00038 Score=53.39 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-|.|.||+|+|||||++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999999887
No 47
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.28 E-value=0.00037 Score=63.94 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=40.1
Q ss_pred cccccHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLT------EEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++|.++.++.|++.|. +.+-+++-++|++|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47999999999999993 3467899999999999999999999976
No 48
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.28 E-value=0.00035 Score=67.77 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=40.2
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++||+.++..++..|......-+-++|.+|+||||+|..+....
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999988765566699999999999999999875
No 49
>PRK06547 hypothetical protein; Provisional
Probab=97.27 E-value=0.0005 Score=53.94 Aligned_cols=34 Identities=26% Similarity=0.224 Sum_probs=28.3
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 154 VWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 154 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+...+......+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444556678899999999999999999998865
No 50
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.26 E-value=0.0056 Score=59.11 Aligned_cols=47 Identities=28% Similarity=0.343 Sum_probs=38.4
Q ss_pred CCcccccHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 141 PPAVVGFQSTLDRVWRCLTE------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.+++|.+..++.+.+++.. .+..++.++|++|+|||++|+.+.+..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999998886632 134589999999999999999999976
No 51
>PRK08233 hypothetical protein; Provisional
Probab=97.25 E-value=0.00029 Score=55.29 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999876
No 52
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.23 E-value=0.0022 Score=54.37 Aligned_cols=25 Identities=44% Similarity=0.716 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+++|+.|+||||++..+....
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998876
No 53
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.23 E-value=0.00044 Score=66.22 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++||+++++.++..|......-+-++|.+|+|||++|+.+....
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999987655556799999999999999999875
No 54
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.22 E-value=0.00029 Score=56.31 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
||+|.|.+|+||||+|+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999987
No 55
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.22 E-value=0.00033 Score=56.55 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|.|..|+|||||++.+....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999865
No 56
>PRK07667 uridine kinase; Provisional
Probab=97.22 E-value=0.00052 Score=54.84 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=30.1
Q ss_pred HHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 151 LDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 151 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+.|.+.+.. ....+|+|-|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666654 245799999999999999999999875
No 57
>PRK04040 adenylate kinase; Provisional
Probab=97.21 E-value=0.0012 Score=52.53 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.20 E-value=0.00036 Score=63.78 Aligned_cols=46 Identities=26% Similarity=0.272 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+...+.|.+++..+++ +.+-++|++|+||||+|+.+.+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999988764 466999999999999999999886
No 59
>PF13173 AAA_14: AAA domain
Probab=97.20 E-value=0.00072 Score=50.19 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCccc
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQ 207 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~ 207 (243)
-+++.|.|+.|+|||||+++++.+. . .....+++.......
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHH
Confidence 4689999999999999999999987 2 345567777655433
No 60
>PHA00729 NTP-binding motif containing protein
Probab=97.20 E-value=0.00064 Score=55.43 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=28.5
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 153 RVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 153 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555666666789999999999999999998874
No 61
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.00058 Score=57.07 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=39.3
Q ss_pred CcccccHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-----EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.++-++++-=.+.. +.+--+-++|++|.||||||..|.+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 4579999988888777754 357789999999999999999999987
No 62
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.17 E-value=0.00054 Score=66.61 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=40.2
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++||+.++..++..|....-.-+-++|.+|+||||||..+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999988765566699999999999999999875
No 63
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.0015 Score=50.12 Aligned_cols=43 Identities=16% Similarity=0.394 Sum_probs=33.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhcC
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIAF 221 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~ 221 (243)
+|.|-|++|+||||+|+.+.++. . =+| .+...++++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-g--l~~-----------vsaG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-G--LKL-----------VSAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-C--Cce-----------eeccHHHHHHHHHcCC
Confidence 78999999999999999999987 1 111 1335688899888776
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=97.17 E-value=0.00033 Score=63.86 Aligned_cols=46 Identities=28% Similarity=0.453 Sum_probs=39.9
Q ss_pred CcccccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE----EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+...+.+..|+.. ...+.+-|+|++|+||||+|+.+.++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999864 236789999999999999999999976
No 65
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.16 E-value=0.0029 Score=52.20 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=39.0
Q ss_pred CcccccHH-HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC
Q 038742 142 PAVVGFQS-TLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR 204 (243)
Q Consensus 142 ~~~vG~~~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 204 (243)
+.++|.+. .+..+..+........+-|+|+.|+|||+|++.+++.. . ..-..+.+++++.
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-~--~~~~~v~y~~~~~ 83 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL-S--QRGRAVGYVPLDK 83 (235)
T ss_pred ccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEEHHH
Confidence 34456333 34444444444455688999999999999999999976 2 2223456666654
No 66
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.14 E-value=0.00055 Score=60.15 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=37.8
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.|+++.+++|.+.+.. ...+-+-++|++|+|||+||+.+++..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999887632 124568899999999999999999976
No 67
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.14 E-value=0.00041 Score=55.99 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+|+|+|+.|+|||||++.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999875
No 68
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.13 E-value=0.0052 Score=55.20 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=35.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC-cccHHHHHHHHHHHhcC
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR-DLQLEKMQESIAKKIAF 221 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~-~~~~~~i~~~I~~~l~~ 221 (243)
+..+|.++|.+|+||||++..+.... ... .+ .++-|+... .+...+-++.+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 36799999999999999999999876 422 23 233333321 12234445556666554
No 69
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=97.13 E-value=0.00057 Score=57.58 Aligned_cols=94 Identities=10% Similarity=0.012 Sum_probs=68.9
Q ss_pred hhhhHHHhhhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhhchHhHHHHHHHHHHHHhHHHHHHHHH--HHhhh
Q 038742 14 TISHCLDCITI----LLPLRTEFQKLIEARNDVQIRVLVAEQR-QWRRLQQVQGWLSRVQDVEKEVPRLLAEI--IGKEE 86 (243)
Q Consensus 14 l~~~l~~~~~~----~~~l~~~l~~L~~~l~~v~~~l~~a~~~-~~~~~~~v~~Wl~~l~~~~~d~ed~ld~~--~~~~~ 86 (243)
+.+.+-++... +..++.+++-++.++..++.|+.+.-+. ..+. +....+..++...||++|.++|.| .....
T Consensus 301 lL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh-~~~ed~a~~ii~kAyevEYVVDaCi~k~~P~ 379 (402)
T PF12061_consen 301 LLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKH-DTNEDCATQIIRKAYEVEYVVDACISKSVPH 379 (402)
T ss_pred HHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhh-hhhhhHHHHHHHHHhheeeeeehhhcCCCcH
Confidence 34444444444 8899999999999999999999987444 5566 449999999999999999999988 34444
Q ss_pred hhhcCCCCCCchhhhhhHHHHHHHHHHHH
Q 038742 87 EILGGFCSGNSIERHKYGKRVVESLKNVQ 115 (243)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~i~ 115 (243)
+|..+| -+.+..+|..++++++
T Consensus 380 Wcl~~W-------L~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 380 WCLERW-------LLDIIEEITCIKAKIQ 401 (402)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHhc
Confidence 554332 2466667766666654
No 70
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.12 E-value=0.00064 Score=53.28 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEE
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWE 200 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv 200 (243)
+..+|.+.|+.|+||||+|+.++... ..++...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34689999999999999999999987 4455544444
No 71
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.11 E-value=0.0039 Score=59.73 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=38.3
Q ss_pred cccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++||+.++..+++.|....-.-+-++|.+|+|||++|+.+....
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999987543444689999999999999999864
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.0023 Score=61.60 Aligned_cols=46 Identities=26% Similarity=0.361 Sum_probs=40.3
Q ss_pred CcccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVG-IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.|.+++..+++. .+-++|+.|+||||+|+.+.+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45899999999999999887655 45899999999999999999876
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.10 E-value=0.00057 Score=60.64 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=37.8
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++.|+++.++++.+.+.. ...+-|-++|++|+|||+||+.+.+..
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 4578999999998887632 235668899999999999999999976
No 74
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.00081 Score=61.03 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=39.5
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+.....|...+..+.+ +.+-++|++|+||||+|+.+.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999988888888887765 568899999999999999998875
No 75
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.09 E-value=0.00052 Score=54.11 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.|+|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998764
No 76
>PRK06762 hypothetical protein; Provisional
Probab=97.09 E-value=0.00055 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998864
No 77
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.07 E-value=0.00053 Score=45.20 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999987
No 78
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.06 E-value=0.0058 Score=49.72 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC------CEEEEEEecCcccHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNF------DFVIWEVVSRDLQLEKMQ 212 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F------~~~~wv~vs~~~~~~~i~ 212 (243)
.-.++.|+|.+|+|||+|+..+.... ..+- ..++|+.....+++..+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 46799999999999999999987754 2222 457899888777766554
No 79
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.001 Score=58.52 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.+.+.+..+++ +.+-++|+.|+||||+|+.+.+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 4589999999999999987654 567899999999999999998875
No 80
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0035 Score=55.07 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.++.++|+.|+||||++..+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 81
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.06 E-value=0.00078 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+.|+|++|+||||+++.+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 578999999999999999999976
No 82
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.06 E-value=0.00059 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|-++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999999765
No 83
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.04 E-value=0.00087 Score=65.26 Aligned_cols=46 Identities=24% Similarity=0.362 Sum_probs=39.7
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++||+.++..++..|......-+-++|.+|+|||++|..+..+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3479999999999999987655556689999999999999998875
No 84
>PRK03839 putative kinase; Provisional
Probab=97.04 E-value=0.00058 Score=53.75 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.|.|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999976
No 85
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.04 E-value=0.0016 Score=52.46 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQE 213 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 213 (243)
.-+++-|+|.+|+|||+|+.++..+. ...-..++|+.... +++..+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 46799999999999999999988765 33456788998865 66555443
No 86
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.03 E-value=0.001 Score=54.58 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+..+|+|.|..|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999999876
No 87
>PRK08727 hypothetical protein; Validated
Probab=97.03 E-value=0.002 Score=53.07 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=38.6
Q ss_pred ccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC
Q 038742 144 VVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR 204 (243)
Q Consensus 144 ~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 204 (243)
++|-.+....+..+........+.|+|..|+|||+|++.+++.. ..+...+.+++..+
T Consensus 22 ~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~---~~~~~~~~y~~~~~ 79 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA---EQAGRSSAYLPLQA 79 (233)
T ss_pred cCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEeHHH
Confidence 34545555555544444444569999999999999999999876 22333456666544
No 88
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.03 E-value=0.0051 Score=59.26 Aligned_cols=47 Identities=30% Similarity=0.325 Sum_probs=39.9
Q ss_pred CCcccccHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 141 PPAVVGFQSTLDRVWRCLTE------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.+.+|.++.++.|+++|.- .+-.++.++|++|+||||+|+.+....
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45579999999999988862 245689999999999999999999865
No 89
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.02 E-value=0.0061 Score=46.43 Aligned_cols=108 Identities=8% Similarity=0.135 Sum_probs=82.6
Q ss_pred ccccccccchhhhhHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHhHHHHHHHHHHHHhHHHHHHHHHHH
Q 038742 4 ACSVSFSCDDTISHCLDCITILLPLRTEFQKLIEARNDVQIRVLVAEQRQWRRLQQVQGWLSRVQDVEKEVPRLLAEIIG 83 (243)
Q Consensus 4 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~L~~~l~~v~~~l~~a~~~~~~~~~~v~~Wl~~l~~~~~d~ed~ld~~~~ 83 (243)
++.++++++.++..+.+...+....+.-+++|.+.++.+...+.+.+......|..-+.-++++.+...++++++++|.+
T Consensus 8 gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk 87 (147)
T PF05659_consen 8 GAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSK 87 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 45578888888888888888888889999999999999999999888877655444478899999999999999988722
Q ss_pred hhhhhhcCCCCCCchhhhhhHHHHHHHHHHHHHHHh
Q 038742 84 KEEEILGGFCSGNSIERHKYGKRVVESLKNVQSLRK 119 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~l~~ 119 (243)
..+ .++...++.+++|+++.+.+.....
T Consensus 88 ~~r--------~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 88 VRR--------WNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred ccH--------HHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 211 2334556677888777777765543
No 90
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.02 E-value=0.00094 Score=57.34 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEP-VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+...+.+..++..++ ..++-++|++|+||||+|+.+++..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 457999999999999998765 4577779999999999999999875
No 91
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.00 E-value=0.0032 Score=52.88 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC-CEEEEEEecCcc-cHHHHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNF-DFVIWEVVSRDL-QLEKMQESIAKK 218 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F-~~~~wv~vs~~~-~~~~i~~~I~~~ 218 (243)
+-.-++|.|-.|+|||||++.+++.. +.+| +.++++.+.+.. .+.++.+++...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~ 123 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKES 123 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhc
Confidence 45679999999999999999999987 4455 556777787755 466777776553
No 92
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.97 E-value=0.00073 Score=49.78 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|-|+|++|+||||+|+.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999986
No 93
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.96 E-value=0.0007 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 94
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.94 E-value=0.0017 Score=60.93 Aligned_cols=75 Identities=11% Similarity=0.128 Sum_probs=57.9
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhcC
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIAF 221 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~ 221 (243)
+.++|.++.++.|...+... +.+-++|.+|+||||+|+.+.+.. . ..+|+..+|..- .+.+...+++.+...++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l-~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL-P-KEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc-C-hHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 45789999888888877665 368899999999999999999875 2 234677788655 344778888888887765
No 95
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.94 E-value=0.00062 Score=54.44 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|.|..|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998753
No 96
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.01 Score=53.00 Aligned_cols=99 Identities=18% Similarity=0.269 Sum_probs=69.2
Q ss_pred CCcccccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCC-CCCEEEEEEecCcccHHHHHHHH
Q 038742 141 PPAVVGFQSTLDRVWRCLTE----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSN-NFDFVIWEVVSRDLQLEKMQESI 215 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~-~F~~~~wv~vs~~~~~~~i~~~I 215 (243)
+..++||+.++..+.+++.. +...-+=|.|.+|.|||.+...++.+. .-.. .| +++.+....--.+..++..|
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~-~~~~~~~-~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSL-SKSSKSP-VTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhh-hhhcccc-eeEEEeeccccchHHHHHHH
Confidence 45689999999999998864 356677789999999999999999987 2211 22 23444333223566777777
Q ss_pred HHHh----cC-CCHHHHHHHHHHHhhcCceE
Q 038742 216 AKKI----AF-SSFHEKAQEIFKTMRNTKFV 241 (243)
Q Consensus 216 ~~~l----~~-~~~~~~~~~l~~~L~~kr~L 241 (243)
...+ .. ....+...++.++...++++
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~ 257 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFM 257 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccce
Confidence 7766 22 34467778888888777643
No 97
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0024 Score=51.63 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++.+|||.|..|+||||+|+.+++..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999987
No 98
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.92 E-value=0.00093 Score=55.94 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=32.1
Q ss_pred cccccHHHHHHHHH---HhcC------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWR---CLTE------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~---~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++|.+..++.+.+ +..- ....-+-++|++|+||||+|+.+.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 47888776655543 3211 134567899999999999999998764
No 99
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.92 E-value=0.0023 Score=59.97 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=52.8
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCC-CCCEEEEEEecCcccHHHHHHHHHHHhc
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSN-NFDFVIWEVVSRDLQLEKMQESIAKKIA 220 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~-~F~~~~wv~vs~~~~~~~i~~~I~~~l~ 220 (243)
++++|.++..+.+...+.... -+-++|++|+||||||+.+.+.. .. .|...+.+ .....+...+++.+...++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l---~~~~~~~~~~~-~n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL---PDEELEDILVY-PNPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc---CchhheeEEEE-eCCCCCchHHHHHHHHhhc
Confidence 457899988888887777653 44499999999999999999876 33 33333322 2223456777888888776
Q ss_pred C
Q 038742 221 F 221 (243)
Q Consensus 221 ~ 221 (243)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 5
No 100
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0069 Score=53.49 Aligned_cols=26 Identities=42% Similarity=0.580 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|+++|++|+||||++..+....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999998765
No 101
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.90 E-value=0.0049 Score=51.37 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|-++||+|+||||..|.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 45688899999999999999999998
No 102
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.0046 Score=56.71 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=40.2
Q ss_pred CcccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVG-IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|-+..++.|.+++..+++. .+-++|+.|+||||+|+.+.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999887654 57899999999999999998876
No 103
>PRK06893 DNA replication initiation factor; Validated
Probab=96.90 E-value=0.0033 Score=51.63 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEec
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVS 203 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 203 (243)
..+.+-++|++|+|||+|++.+.+.. .. +...+.+++++
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~-~~--~~~~~~y~~~~ 76 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY-LL--NQRTAIYIPLS 76 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HH--cCCCeEEeeHH
Confidence 34578999999999999999999986 22 22345677664
No 104
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.0045 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++.++|++|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 105
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.88 E-value=0.0032 Score=53.28 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 151 LDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 151 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++...++...+..++.|+|.+|.|||||+..+.+..
T Consensus 92 a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 92 AERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334445555589999999999999999999999976
No 106
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.84 E-value=0.013 Score=52.44 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|.++|.+|+||||.+..+....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 36799999999999999988887764
No 107
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.84 E-value=0.00078 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|.|..|+||||||+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 108
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.83 E-value=0.0058 Score=54.81 Aligned_cols=25 Identities=44% Similarity=0.695 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-+++.++|++|+||||++..+....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999998887765
No 109
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.0015 Score=59.01 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=40.6
Q ss_pred CcccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVG-IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..+..|..++..+++. .+-++|+.|+||||+|+.+.+..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45899999999999999888754 68899999999999999998876
No 110
>PRK14527 adenylate kinase; Provisional
Probab=96.83 E-value=0.0024 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|.|+|++|+||||+|+.+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998775
No 111
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.82 E-value=0.0034 Score=52.46 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESI 215 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I 215 (243)
.-+++.|.|.+|+|||+++.+..... ..+.+.++||+.++ ++..+.+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e--~~~~l~~~~ 70 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEE--SPEELLENA 70 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecC--CHHHHHHHH
Confidence 57899999999999999999998876 55588899999887 445555544
No 112
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.81 E-value=0.0065 Score=53.23 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=50.3
Q ss_pred HHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCE-EEEEEecCcc-cHHHHHHHHHHHhcC
Q 038742 150 TLDRVWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDF-VIWEVVSRDL-QLEKMQESIAKKIAF 221 (243)
Q Consensus 150 ~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~-~~wv~vs~~~-~~~~i~~~I~~~l~~ 221 (243)
....+++.+.. .+-.-+.|+|.+|+|||||++.+.+.. .. .+=+. ++|+.+.+.. ++.++++.+...+..
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i-~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV-AA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 34457777765 344567999999999999999998875 22 22244 4787777754 688888888776654
No 113
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.79 E-value=0.0028 Score=57.28 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=40.9
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFD 195 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~ 195 (243)
..++|+++.++.+...+..+. -+-+.|++|+|||+||+.+.... .....|.
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~-~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF-QNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh-cccCcce
Confidence 458999999999999887763 37789999999999999999975 3233454
No 114
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.0017 Score=59.78 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=39.5
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|-+..++.|.+.+..+++ +.+-++|+.|+||||+|+.+.+..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999987654 457789999999999999998865
No 115
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.79 E-value=0.0019 Score=52.61 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=52.7
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQE 213 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 213 (243)
.++||-++.++.+.-...+.+.+-+-|.||+|+||||-+..+..... -...=+.+.-.+.|.+....-+-.
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGIDvVRn 97 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGIDVVRN 97 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccccccHHHHH
Confidence 45899999999999988888899999999999999998888877651 111124556666776655444433
No 116
>PRK00625 shikimate kinase; Provisional
Probab=96.79 E-value=0.0012 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 117
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.79 E-value=0.0035 Score=51.34 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCC----CCEEEEEEecCcccHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNN----FDFVIWEVVSRDLQLEKMQ 212 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~----F~~~~wv~vs~~~~~~~i~ 212 (243)
.-.++.|+|.+|+|||+|+.++.-.. ..... -..++|++-...++...+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 45799999999999999999997543 21221 3678999988877765543
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.79 E-value=0.0032 Score=51.44 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=30.1
Q ss_pred cccHHH-HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 145 VGFQST-LDRVWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 145 vG~~~~-~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.++. ...+.++... .....+-|+|..|+|||+||+.+++..
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 354433 3444444442 345678899999999999999999975
No 119
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0072 Score=51.58 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=43.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCC--CCCEEEEEEecCcccHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCc
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSN--NFDFVIWEVVSRDLQLEKMQESIAKKIAFSSFHEKAQEIFKTMRNTK 239 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~--~F~~~~wv~vs~~~~~~~i~~~I~~~l~~~~~~~~~~~l~~~L~~kr 239 (243)
--++|-++|++|.|||+|.+.++.+. .++. .+....-+.++ -..++..=+..-| +....+-++|.+.+.++.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEin----shsLFSKWFsESg-KlV~kmF~kI~ELv~d~~ 249 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEIN----SHSLFSKWFSESG-KLVAKMFQKIQELVEDRG 249 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEe----hhHHHHHHHhhhh-hHHHHHHHHHHHHHhCCC
Confidence 36789999999999999999999997 6543 34333334332 1222222222111 223344455666666555
Q ss_pred eEE
Q 038742 240 FVL 242 (243)
Q Consensus 240 ~Ll 242 (243)
.|+
T Consensus 250 ~lV 252 (423)
T KOG0744|consen 250 NLV 252 (423)
T ss_pred cEE
Confidence 443
No 120
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.78 E-value=0.001 Score=52.85 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999975
No 121
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.78 E-value=0.001 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
||.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998875
No 122
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.002 Score=57.37 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=39.6
Q ss_pred CcccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVG-IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+...+.|.+++..+++. .+-++|+.|+||||+|..+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999887654 58899999999999999988876
No 123
>PRK10867 signal recognition particle protein; Provisional
Probab=96.77 E-value=0.017 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|.++|.+|+||||.+..+....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999887777655
No 124
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.77 E-value=0.0013 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.|+|+.|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999997764
No 125
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.0074 Score=56.70 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=39.7
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.|.+.+..+++ +.+-++|..|+||||+|+.+.+..
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999988765 446799999999999999998875
No 126
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.77 E-value=0.0048 Score=54.79 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=48.2
Q ss_pred CcccccHHHHHHHHHHhcCC--------------CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC---CEEEEEEecC
Q 038742 142 PAVVGFQSTLDRVWRCLTEE--------------PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNF---DFVIWEVVSR 204 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F---~~~~wv~vs~ 204 (243)
..++|.++.++.+...+... ..+-|-++|++|+||||||+.+.... ..+| +..-+...+.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vdat~~~e~g~ 88 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGY 88 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEeecceeecCCc
Confidence 45789988888887666531 24678899999999999999999976 4444 2221222211
Q ss_pred -cccHHHHHHHHHHH
Q 038742 205 -DLQLEKMQESIAKK 218 (243)
Q Consensus 205 -~~~~~~i~~~I~~~ 218 (243)
..+...+++.+...
T Consensus 89 vG~dvE~i~r~l~e~ 103 (441)
T TIGR00390 89 VGRDVESMVRDLTDA 103 (441)
T ss_pred ccCCHHHHHHHHHHH
Confidence 22555666666544
No 127
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.75 E-value=0.0012 Score=49.78 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 128
>PRK08116 hypothetical protein; Validated
Probab=96.75 E-value=0.0068 Score=51.00 Aligned_cols=37 Identities=30% Similarity=0.159 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEec
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVS 203 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 203 (243)
..+-++|..|+|||+||..+++.. . .+-..+++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l-~--~~~~~v~~~~~~ 151 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL-I--EKGVPVIFVNFP 151 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEHH
Confidence 357899999999999999999987 2 223345666643
No 129
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.75 E-value=0.002 Score=54.72 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|||.|..|+||||||+.+..-.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999998876544
No 130
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.74 E-value=0.009 Score=46.57 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.++|++|+||||++..+....
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999999999998875
No 131
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.74 E-value=0.0098 Score=56.51 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=39.1
Q ss_pred CcccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEP-VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.|.+++..++ .+.+-++|..|+||||+|+.+.+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999998875 4455799999999999999888765
No 132
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0012 Score=51.31 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 038742 165 IVGLHGMGGVGKTTLLTQIN 184 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~ 184 (243)
.|+|.|.+|+||||++..+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 133
>PRK09087 hypothetical protein; Validated
Probab=96.74 E-value=0.016 Score=47.43 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+.+.|||..|+|||+|++.++...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34678999999999999999988764
No 134
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.0081 Score=54.93 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+|+|+|..|+||||++..+....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998888754
No 135
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.73 E-value=0.0025 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.|.|++|+||||+|+.+....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 136
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.71 E-value=0.0013 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|.|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998853
No 137
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.71 E-value=0.0025 Score=50.32 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEE
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEV 201 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~ 201 (243)
.++|.|+|+.|+|||||++.+.... .+.|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4689999999999999999999976 67786555554
No 138
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.69 E-value=0.0013 Score=51.88 Aligned_cols=23 Identities=39% Similarity=0.756 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|.|..|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 139
>CHL00181 cbbX CbbX; Provisional
Probab=96.69 E-value=0.003 Score=53.73 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=31.9
Q ss_pred CcccccHHHHHHHHHHh---cC------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCL---TE------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L---~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..+++|.++. .- .....+-++|.+|+||||+|+.++...
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34788776666554432 11 123347889999999999999998864
No 140
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.69 E-value=0.0019 Score=48.94 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR 204 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 204 (243)
++|+|+|..|+|||||++.+.+.. . +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-K-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-H-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-h-HcCCceEEEEEccC
Confidence 489999999999999999999987 3 23455555555544
No 141
>PRK06217 hypothetical protein; Validated
Probab=96.68 E-value=0.0015 Score=51.62 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCC--CEEEEEE
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSFLHTSNNF--DFVIWEV 201 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F--~~~~wv~ 201 (243)
..|.|.|++|+||||||+.+.... .. .+| |...|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l-~~-~~~~~D~~~~~~ 39 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL-DI-PHLDTDDYFWLP 39 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-CC-cEEEcCceeecc
Confidence 358999999999999999999986 32 233 4566654
No 142
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.68 E-value=0.0015 Score=47.29 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999876
No 143
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.68 E-value=0.0018 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|.++|++|+||||+|+.+....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999976
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.67 E-value=0.0024 Score=56.73 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=36.9
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.|.+..+++|.+.+.- ...+-+-++|++|+|||+||+.+.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 3478998888888776531 145678899999999999999999976
No 145
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.0026 Score=58.98 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=39.6
Q ss_pred CcccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEP-VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.+.+.+..++ .+.+-++|+.|+||||+|+.+....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999997765 4468899999999999999998875
No 146
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.67 E-value=0.0025 Score=48.42 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcc
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDL 206 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~ 206 (243)
++.|.|.+|+||||++..+.... ...-..++++.....+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 46899999999999999998875 2233456666655443
No 147
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.67 E-value=0.0045 Score=50.46 Aligned_cols=46 Identities=26% Similarity=0.247 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKM 211 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i 211 (243)
.-.++-|+|.+|+|||+||.++.... ...-..++|++.. .+++..+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCHHHH
Confidence 46799999999999999999998875 2334667888877 5555443
No 148
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.66 E-value=0.003 Score=47.36 Aligned_cols=42 Identities=33% Similarity=0.310 Sum_probs=30.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHH
Q 038742 166 VGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQE 213 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 213 (243)
|-++|.+|+|||+||+.+.... ..+ ..-+.++...+..++.-
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~---~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRP---VIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCE---EEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcc---eEEEEecccccccccee
Confidence 5689999999999999999875 222 23356777777766654
No 149
>PRK10536 hypothetical protein; Provisional
Probab=96.66 E-value=0.017 Score=48.07 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=36.1
Q ss_pred cccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+.++......++.+|.+. .++.+.|.+|+|||+||..+..+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567888888888888764 489999999999999999998863
No 150
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.65 E-value=0.0023 Score=51.62 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=26.8
Q ss_pred HhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 157 CLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 157 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+...++++|+++|..|+|||||.+++....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444579999999999999999999998875
No 151
>PRK13975 thymidylate kinase; Provisional
Probab=96.65 E-value=0.0018 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..|.|.|+.|+||||+++.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 152
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.65 E-value=0.0095 Score=58.33 Aligned_cols=68 Identities=21% Similarity=0.230 Sum_probs=48.6
Q ss_pred CcccccHHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC-cccHHHHHHHHHHHh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR-DLQLEKMQESIAKKI 219 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~-~~~~~~i~~~I~~~l 219 (243)
+.++-|+. |.+.|.. ...+++.|.|++|.|||||+....... +.++|+++.. +.++..+...++..+
T Consensus 14 ~~~~~R~r----l~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~-------~~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 14 HNTVVRER----LLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGK-------NNLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred cccCcchH----HHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhC-------CCeEEEecCcccCCHHHHHHHHHHHH
Confidence 44566664 4444433 357899999999999999999977542 2589999964 446667777777766
Q ss_pred c
Q 038742 220 A 220 (243)
Q Consensus 220 ~ 220 (243)
+
T Consensus 83 ~ 83 (903)
T PRK04841 83 Q 83 (903)
T ss_pred H
Confidence 4
No 153
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.64 E-value=0.0019 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+|.|+|++|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 154
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.63 E-value=0.0032 Score=51.92 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEe
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVV 202 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~v 202 (243)
.++|+|..|+|||||+..+.... ...|.++.+++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 57899999999999999999876 778988777764
No 155
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.028 Score=49.45 Aligned_cols=38 Identities=32% Similarity=0.354 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEe
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVV 202 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~v 202 (243)
+.++++++|+.|+||||++..+.... ..+. ..+.+++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~g--~~V~lIta 242 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQN--RTVGFITT 242 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHcC--CeEEEEeC
Confidence 46799999999999999999998765 2222 23555554
No 156
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.63 E-value=0.0018 Score=48.78 Aligned_cols=23 Identities=43% Similarity=0.758 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999864
No 157
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.62 E-value=0.004 Score=57.48 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=38.2
Q ss_pred cccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++|.+..++.+...+......-+-|+|.+|+||||+|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999888776655566799999999999999998754
No 158
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.017 Score=51.52 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+|+++|..|+||||++..+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999887653
No 159
>PRK13947 shikimate kinase; Provisional
Probab=96.61 E-value=0.002 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999875
No 160
>PRK14530 adenylate kinase; Provisional
Probab=96.61 E-value=0.0019 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.|+|++|+||||+|+.+....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 161
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.61 E-value=0.0023 Score=50.17 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 162
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.60 E-value=0.0019 Score=51.82 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+|+|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999875
No 163
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.003 Score=59.07 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEP-VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+...+.|.+++..++ .+.+-++|+.|+||||+|+.+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999998875 4577899999999999999998765
No 164
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.59 E-value=0.011 Score=47.14 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|+|.|..|+||||+++.+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999876
No 165
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.58 E-value=0.0028 Score=49.50 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=31.8
Q ss_pred ccccHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 144 VVGFQSTLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 144 ~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|.+..+.++++.+.. ....-|-|+|..|+||+.+|+.|++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46777777777777754 222445599999999999999999965
No 166
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.58 E-value=0.003 Score=55.00 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=40.5
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.++.+..|+..+.+..+.-|-|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999988888877777799999999999999997765
No 167
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.57 E-value=0.0063 Score=48.14 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 168
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.57 E-value=0.0018 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47789999999999999998864
No 169
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.57 E-value=0.0029 Score=56.80 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=36.2
Q ss_pred cccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++.|.+..+++|.+.+.- ....-+.++|++|+|||+||+.+.+..
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899888888876631 134567899999999999999999976
No 170
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.0032 Score=57.31 Aligned_cols=45 Identities=27% Similarity=0.281 Sum_probs=38.8
Q ss_pred CcccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVG-IVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+++|.+..++.|.+.+..+++. -+-++|+.|+||||+|+.+...
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 45899999999999988877655 7889999999999999988763
No 171
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.56 E-value=0.0033 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998865
No 172
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.56 E-value=0.0095 Score=51.32 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLE 209 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 209 (243)
.-+++-|.|++|+||||||.++.... ...=..++|+...+.+++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH
Confidence 46799999999999999999887765 2233556788777766653
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.56 E-value=0.0092 Score=48.23 Aligned_cols=53 Identities=28% Similarity=0.348 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcc----cCCCCCEEEEEEecCcccHHHHHHHHHH
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSFLH----TSNNFDFVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~~~----v~~~F~~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
+..|+|++|.||||++..+...... ....-...+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7889999999999766666554301 0133344555555555667777777766
No 174
>PRK13949 shikimate kinase; Provisional
Probab=96.56 E-value=0.0021 Score=50.22 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.|+|++|+||||+++.+....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999875
No 175
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.55 E-value=0.0028 Score=49.70 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|.+.|++|+||||+|+.+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998864
No 176
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.55 E-value=0.0063 Score=50.47 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=36.4
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHH
Q 038742 150 TLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEK 210 (243)
Q Consensus 150 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~ 210 (243)
...++++.|.. .+..+|+|.|+||.||+||...+-... ..+++=-.++=|--|.+++--.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGA 75 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGA 75 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCc
Confidence 45566666654 368899999999999999999999887 4443322233344455555433
No 177
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.54 E-value=0.022 Score=47.61 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=40.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccC---C-CCCEEEEEEecCcccHHHHHHHHHHHhcC
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTS---N-NFDFVIWEVVSRDLQLEKMQESIAKKIAF 221 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~---~-~F~~~~wv~vs~~~~~~~i~~~I~~~l~~ 221 (243)
.-.+.=|+|.+|+|||.|+-.+.=.. ... . .=..++|+.-...|++..+. +|++..+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 35588899999999999998876543 211 1 12458999988889888765 46665543
No 178
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.54 E-value=0.0075 Score=48.87 Aligned_cols=42 Identities=17% Similarity=0.072 Sum_probs=31.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcc
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDL 206 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~ 206 (243)
.-+++.|.|.+|+|||||+.++.... ...=..++|+.....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLS 59 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCC
Confidence 46789999999999999999998765 2222346677655444
No 179
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.54 E-value=0.015 Score=52.73 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.|++++|+.|+||||++..+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999999876
No 180
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.54 E-value=0.0039 Score=56.95 Aligned_cols=45 Identities=27% Similarity=0.398 Sum_probs=36.7
Q ss_pred cccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++.|.+..++++.+.+.- ...+-+-++|++|+|||++|+.+++..
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 467899988888887632 135568899999999999999999986
No 181
>PRK13695 putative NTPase; Provisional
Probab=96.54 E-value=0.0037 Score=48.90 Aligned_cols=23 Identities=43% Similarity=0.696 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|+|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998875
No 182
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.53 E-value=0.0093 Score=51.44 Aligned_cols=45 Identities=20% Similarity=0.068 Sum_probs=34.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLE 209 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 209 (243)
.-+++-|+|++|+||||||.++.-.. ...-..++|+...+.+++.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV 98 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH
Confidence 46688899999999999999987765 2334567888887777753
No 183
>PRK05642 DNA replication initiation factor; Validated
Probab=96.53 E-value=0.027 Score=46.41 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR 204 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 204 (243)
...+-|+|..|+|||+|++.+.+.. ..+. ..+++++...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~~~~--~~v~y~~~~~ 83 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-EQRG--EPAVYLPLAE 83 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HhCC--CcEEEeeHHH
Confidence 3678999999999999999999875 2222 3456776543
No 184
>PRK12377 putative replication protein; Provisional
Probab=96.52 E-value=0.0057 Score=50.81 Aligned_cols=39 Identities=26% Similarity=0.203 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEec
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVS 203 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 203 (243)
+..-+.++|.+|+|||+||..+.+.. . .....+++++++
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l-~--~~g~~v~~i~~~ 138 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRL-L--AKGRSVIVVTVP 138 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCCeEEEEHH
Confidence 34678999999999999999999987 3 333345667664
No 185
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.01 Score=54.64 Aligned_cols=45 Identities=31% Similarity=0.446 Sum_probs=37.3
Q ss_pred cccccHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTE------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++-|.+..+.++.+++.. ...+=|-++|++|.|||.||+.+.++.
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc
Confidence 456889888888877753 156778899999999999999999987
No 186
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.51 E-value=0.0055 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|+|.|-||+||||+|..+....
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 69999999999999999966665
No 187
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.50 E-value=0.0042 Score=47.87 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEE
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEV 201 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~ 201 (243)
||+|+|+.|+|||||+..+.... +.+ .+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l-~~~-G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL-KAR-GYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-Hhc-CCeEEEEec
Confidence 58999999999999999999986 322 344444443
No 188
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.49 E-value=0.0022 Score=46.09 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|=|+|.+|+|||+||+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999987765
No 189
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.016 Score=55.35 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=46.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCccc--HHHHHHHHHHHhcC-----CCHHHHHHHHHHHh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQ--LEKMQESIAKKIAF-----SSFHEKAQEIFKTM 235 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~--~~~i~~~I~~~l~~-----~~~~~~~~~l~~~L 235 (243)
-.||+++|+.|+||||++..+.... .....-..+..++.. .+. ..+-++...+.++. .+..++...+. .+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-AL 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hh
Confidence 4699999999999999999998765 222112234444432 222 34445555555554 45555544443 45
Q ss_pred hcCceEEC
Q 038742 236 RNTKFVLL 243 (243)
Q Consensus 236 ~~kr~Llv 243 (243)
+++.++||
T Consensus 262 ~~~D~VLI 269 (767)
T PRK14723 262 GDKHLVLI 269 (767)
T ss_pred cCCCEEEE
Confidence 56666654
No 190
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.49 E-value=0.0027 Score=47.03 Aligned_cols=27 Identities=44% Similarity=0.621 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhcccCCCCC
Q 038742 166 VGLHGMGGVGKTTLLTQINNSFLHTSNNFD 195 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~~~v~~~F~ 195 (243)
+-++|.+|+||||+|+.+.... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 5689999999999999999976 56664
No 191
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.48 E-value=0.0026 Score=48.36 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.++|++|.||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998765
No 192
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.47 E-value=0.0026 Score=49.68 Aligned_cols=22 Identities=41% Similarity=0.618 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.|.|.+|+|||||++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999999886
No 193
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.0047 Score=54.28 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=40.0
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+...+.+.+.+..+++ +.+-++|++|+||||+|+.+.+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999987654 478899999999999999997765
No 194
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0055 Score=46.50 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+-|-|.|.+|+|||||+..+....
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3457899999999999999998643
No 195
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.45 E-value=0.005 Score=53.67 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=39.4
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.+.+++..++. +.+-++|++|+||||+|+.+....
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999987654 467899999999999999888764
No 196
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.44 E-value=0.0054 Score=53.28 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=38.0
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+.++|.+..+..++-.+.+....-+.|.|..|+|||||++.+..-
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 457999999988877777766677789999999999999999743
No 197
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.44 E-value=0.0039 Score=47.98 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|=|.|..|.||||||+.+....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999988
No 198
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.43 E-value=0.0033 Score=50.35 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+..+|.|+|+.|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999999998865
No 199
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.43 E-value=0.0027 Score=50.33 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 200
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.023 Score=50.30 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.++|+.|+||||.+..+....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 201
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.0045 Score=57.87 Aligned_cols=46 Identities=26% Similarity=0.377 Sum_probs=39.2
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|-+..++.|.+++..+++ +.+-++|..|+||||+|+.+.+..
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999988765 567899999999999999996554
No 202
>PRK05439 pantothenate kinase; Provisional
Probab=96.43 E-value=0.027 Score=48.35 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-+|+|.|.+|+||||+|+.+....
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998855
No 203
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.43 E-value=0.028 Score=46.61 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=33.5
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEe
Q 038742 150 TLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVV 202 (243)
Q Consensus 150 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~v 202 (243)
.+..+.+...+ .+...+-++|.+|+|||+||..+.+.. .. .-..++++++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l-~~--~g~~v~~it~ 135 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL-LL--RGKSVLIITV 135 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEEH
Confidence 44455554433 234578899999999999999999987 32 2234555554
No 204
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.43 E-value=0.0022 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.|+|+|-||+||||++..+....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 479999999999999998888765
No 205
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.43 E-value=0.0024 Score=49.36 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~ 186 (243)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 899999999999999999874
No 206
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.43 E-value=0.0046 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998765
No 207
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.42 E-value=0.0088 Score=53.18 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=37.7
Q ss_pred CcccccHHHHHHHHHHhcCC--------------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEE--------------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|.+..++.+..++... ...-|-++|++|+||||||+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999988888777430 14678999999999999999998876
No 208
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.42 E-value=0.019 Score=49.37 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccC----CCCCEEEEEEecCcccHHHHHHHHHHHhcC
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTS----NNFDFVIWEVVSRDLQLEKMQESIAKKIAF 221 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~ 221 (243)
.-+++-|+|.+|+|||+|+..+.-.. ... ..=..++|+.-..+|+++.+.+ ++++++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 46788899999999999998876432 111 1124689999999999888754 5566544
No 209
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.41 E-value=0.0096 Score=50.55 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=30.4
Q ss_pred cccccHHHHHHHHHHhc---CC------------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLT---EE------------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~---~~------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++|.++.+++|.++.. .. ...-+-++|++|+||||+|+.+....
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 46787766666544321 10 12257799999999999998777655
No 210
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.0048 Score=56.45 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=39.6
Q ss_pred CcccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEP-VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..+..|.+.+..++ .+-+-++|+.|+||||+|+.+.+..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 347999999999999887765 3578899999999999999999876
No 211
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.39 E-value=0.0028 Score=47.22 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|..|+|||||.+.+....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3589999999999999999998865
No 212
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.024 Score=47.29 Aligned_cols=39 Identities=28% Similarity=0.291 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEec
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVS 203 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 203 (243)
+..-+.++|.+|+|||.||.++.++. - +..+ .+.+++++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~-~~g~-sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L-KAGI-SVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H-HcCC-eEEEEEHH
Confidence 56678999999999999999999997 3 3333 34556654
No 213
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0032 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|-|.|.+|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999975
No 214
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.37 E-value=0.0025 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.++|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 215
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.005 Score=57.68 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=39.6
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|-+..++.|.+.+..+++ +-+-++|+.|+||||+|+.+.+..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999887765 458899999999999999888776
No 216
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0052 Score=48.37 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.++.|.|+.|+|||||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999963
No 217
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0057 Score=52.83 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=36.9
Q ss_pred ccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 144 VVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 144 ~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-|.++.+++|.+...- +..+=|-.+|++|.|||-||++|.|+-
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 55889888888887643 267788999999999999999999975
No 218
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.0046 Score=57.80 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.|.+++..+++ +.+-++|..|+||||+|+.+.+..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999988764 456899999999999999998876
No 219
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.37 E-value=0.0032 Score=45.63 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~ 186 (243)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999984
No 220
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.36 E-value=0.0065 Score=45.49 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+|.+.|.-|.|||||++.+....
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34589999999999999999999986
No 221
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.36 E-value=0.0051 Score=47.55 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 149 STLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+++|.+.|.+ +++.++|..|+|||||.+.+..+.
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456677777765 789999999999999999999874
No 222
>PRK06851 hypothetical protein; Provisional
Probab=96.34 E-value=0.1 Score=45.83 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 145 VGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 145 vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.-.-.+.++ .+--+++.|.|.+|+|||||++.++...
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 45555555554 3446789999999999999999999986
No 223
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.34 E-value=0.035 Score=49.73 Aligned_cols=26 Identities=27% Similarity=0.453 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|.++|..|+||||++..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999998765
No 224
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.0046 Score=58.20 Aligned_cols=46 Identities=28% Similarity=0.384 Sum_probs=39.9
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.|.+++..+++ +.+-++|..|+||||+|+.+....
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4589999999999999988764 468999999999999999987764
No 225
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.32 E-value=0.012 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 226
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.32 E-value=0.0028 Score=51.14 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 568999999999999999999875
No 227
>PRK09354 recA recombinase A; Provisional
Probab=96.31 E-value=0.016 Score=50.38 Aligned_cols=44 Identities=20% Similarity=0.080 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQL 208 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~ 208 (243)
.-+++-|+|++|+|||||+.++.... ...=..++|+...+.+++
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHH
Confidence 46688899999999999999988765 333466789988887775
No 228
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.31 E-value=0.0044 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998865
No 229
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.31 E-value=0.004 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..|.|+|+.|.|||||++.+....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999999865
No 230
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.28 E-value=0.004 Score=50.04 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
..+|+++|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998877
No 231
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.0039 Score=48.16 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhcC
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIAF 221 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~ 221 (243)
..++.|+|.+|+||||+.+.+-... +..+ -.|...+.-+++...+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l--~~~~-----------ivNyG~~Mle~A~k~gl 49 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL--VKHK-----------IVNYGDLMLEIAKKKGL 49 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH--hhce-----------eeeHhHHHHHHHHHhCC
Confidence 5789999999999999998776643 1111 12556677777777666
No 232
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.28 E-value=0.0035 Score=47.81 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|+++|.+|+|||||++.+.+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 233
>PRK04182 cytidylate kinase; Provisional
Probab=96.27 E-value=0.0042 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998875
No 234
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.27 E-value=0.0063 Score=56.14 Aligned_cols=46 Identities=26% Similarity=0.373 Sum_probs=39.6
Q ss_pred CcccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVG-IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|-+..++.|.+++..+++. .+-++|+.|+||||+|+.+....
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999887654 56899999999999999998765
No 235
>PLN02165 adenylate isopentenyltransferase
Probab=96.26 E-value=0.0062 Score=52.54 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=25.6
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 158 LTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 158 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.+..-.+|+|+|+.|+||||||..+....
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 345556699999999999999999998875
No 236
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.25 E-value=0.0064 Score=56.58 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=40.2
Q ss_pred CcccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVG-IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.|.+++..+++. .+-++|+.|+||||+|+.+....
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999887654 57899999999999999998875
No 237
>PLN02924 thymidylate kinase
Probab=96.25 E-value=0.028 Score=45.91 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHH
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
-..|+|-|..|+||||+++.+.+.. ... .+....+-..+......+..++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l-~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFL-KGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-Hhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 4689999999999999999999998 433 3444333222222334555566554
No 238
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.25 E-value=0.0066 Score=51.21 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=41.7
Q ss_pred HHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHH
Q 038742 151 LDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKM 211 (243)
Q Consensus 151 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i 211 (243)
..+|+..|.. .+..+|+|.|.||+||+||.-.+-... ....|=-.++=|--|.+++--.|
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccc
Confidence 3456665654 468899999999999999999998887 55554334444555666654433
No 239
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.23 E-value=0.011 Score=43.76 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=35.7
Q ss_pred CcccccHHHHHHHHHHhcC-------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|..-..+.+++.+.+ ++.-|++..|..|+|||.+++.|.++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4477877666666666643 367799999999999999988888874
No 240
>PLN02200 adenylate kinase family protein
Probab=96.23 E-value=0.0051 Score=50.69 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|.|.|++|+||||+|+.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998865
No 241
>PRK06761 hypothetical protein; Provisional
Probab=96.22 E-value=0.0098 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|.|.|++|+||||+++.+.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999986
No 242
>PRK06620 hypothetical protein; Validated
Probab=96.22 E-value=0.0041 Score=50.57 Aligned_cols=46 Identities=15% Similarity=0.027 Sum_probs=30.4
Q ss_pred CcccccHH--HHHHHHHHhcC-C-Cc--eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQS--TLDRVWRCLTE-E-PV--GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~--~~~~l~~~L~~-~-~~--~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|-.+ ....+..+-.. + +. +.+-|+|++|+|||+|++.+.+..
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc
Confidence 44567632 34444444332 1 12 668999999999999999988764
No 243
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.20 E-value=0.0042 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998875
No 244
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.20 E-value=0.0038 Score=50.49 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|.|-||+||||++-.+....
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~l 24 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAAL 24 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHH
Confidence 579999999999999888777665
No 245
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.19 E-value=0.0078 Score=48.22 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|+|+.|+||||++..+....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999877665
No 246
>PF13245 AAA_19: Part of AAA domain
Probab=96.19 E-value=0.015 Score=39.13 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=18.4
Q ss_pred CceEEEEEcCCCCcHH-HHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKT-TLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKT-tLa~~v~~~~ 187 (243)
+-++..|.|.+|.||| |+++.+..-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567788999999999 5555554443
No 247
>PRK13946 shikimate kinase; Provisional
Probab=96.19 E-value=0.0051 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+.|.++|+.|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999999975
No 248
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.18 E-value=0.018 Score=48.26 Aligned_cols=37 Identities=32% Similarity=0.364 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 149 STLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-++.+..++..+ .-+-+.|.+|+|||+||+.+....
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4445555555544 234589999999999999998754
No 249
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.18 E-value=0.0039 Score=48.01 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
-|+|+|.+|+|||||++.+.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998776
No 250
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.18 E-value=0.0084 Score=48.62 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 251
>PRK13948 shikimate kinase; Provisional
Probab=96.17 E-value=0.0055 Score=48.48 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+.|.++||.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45788999999999999999999875
No 252
>PRK14529 adenylate kinase; Provisional
Probab=96.16 E-value=0.024 Score=46.31 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.|.|++|+||||+++.+....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999877
No 253
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.16 E-value=0.0053 Score=47.52 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|.|.|+.|+||||+|+.+.+..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998764
No 254
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.16 E-value=0.02 Score=45.77 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=26.8
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 154 VWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 154 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+..+..++-++..|.|.+|.||||++..+....
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 3444444555788899999999999999998876
No 255
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.16 E-value=0.0049 Score=46.71 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
..+|+++|..|+|||||++.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998765
No 256
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.15 E-value=0.0054 Score=44.06 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 038742 163 VGIVGLHGMGGVGKTTLLTQIN 184 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~ 184 (243)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 257
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.13 E-value=0.0072 Score=55.38 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=33.5
Q ss_pred CcccccHHHHHHHHHHh---cC---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCL---TE---------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.|.++.++++.+++ .. ...+-+-++|++|+|||+||+.+.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 34778887666555443 22 123457899999999999999999875
No 258
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.13 E-value=0.0051 Score=52.51 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 160 EEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 160 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++.++|++.|-||+||||++-.+..-.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~L 30 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAM 30 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHH
Confidence 4568999999999999999888776665
No 259
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.13 E-value=0.0043 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|+|-||+||||++..+..-.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~L 25 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAAL 25 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999999988887765
No 260
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.0088 Score=53.10 Aligned_cols=46 Identities=11% Similarity=0.168 Sum_probs=38.6
Q ss_pred CcccccHHHHHHHHHHhcCCC----------ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEP----------VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.|.+.+..+. .+-+-++|+.|+||||+|..+....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 458899999999999997753 4568899999999999999987654
No 261
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.13 E-value=0.0077 Score=56.28 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVG-IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.|.+.+..+++. -+-++|+.|+||||+|+.+.+..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45899999999999999887644 68899999999999999998865
No 262
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.12 E-value=0.017 Score=49.87 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC----CEEEEEEecCcccHHHHHHHHHHHh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNF----DFVIWEVVSRDLQLEKMQESIAKKI 219 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F----~~~~wv~vs~~~~~~~i~~~I~~~l 219 (243)
.-.++-|+|.+|+|||+|+.++.-.. .....+ ..++|+....+|++..+.+ +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 46788899999999999999998764 211111 3689999988888877654 33443
No 263
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.12 E-value=0.011 Score=50.90 Aligned_cols=48 Identities=27% Similarity=0.314 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHH
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQE 213 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 213 (243)
.+++-+.|.|||||||+|....-.. ...+ .-+.-|+.....++..++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l-A~~g--~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL-AESG--KKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH-HHcC--CcEEEEEeCCCCchHhhhc
Confidence 4789999999999999999855443 2122 3366666555555555443
No 264
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.12 E-value=0.0048 Score=47.23 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.|+|.+|+|||||++.+.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999997653
No 265
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.11 E-value=0.0049 Score=51.28 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999999854
No 266
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.11 E-value=0.0077 Score=52.24 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=36.3
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+.++|.+..++.+.-.+.+.+..-+-+.|.+|+||||||+.+..-
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999888876665544556889999999999999999654
No 267
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.11 E-value=0.0055 Score=48.21 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.|+|..|.|||||++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999876
No 268
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.11 E-value=0.0048 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.++|.+|+|||||++.+.+..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999988753
No 269
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.10 E-value=0.018 Score=49.53 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHhhhcccC--CCC---CEEEEEEecCcccHHHHHHHHHHHh
Q 038742 148 QSTLDRVWRCLTE---EPVGIVGLHGMGGVGKTTLLTQINNSFLHTS--NNF---DFVIWEVVSRDLQLEKMQESIAKKI 219 (243)
Q Consensus 148 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~--~~F---~~~~wv~vs~~~~~~~i~~~I~~~l 219 (243)
+...+.|.+.|.+ +...+|+|.|.=|+||||+.+.+.+.. +-. ..+ ..-+|-.-+.+--...++.+|..++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L-~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL-KEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH-hcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 4456677777775 368899999999999999999999987 433 112 2335555554444566677777766
Q ss_pred cC
Q 038742 220 AF 221 (243)
Q Consensus 220 ~~ 221 (243)
..
T Consensus 81 ~~ 82 (325)
T PF07693_consen 81 EK 82 (325)
T ss_pred HH
Confidence 54
No 270
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.10 E-value=0.006 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|+|..|+|||||+..+....
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 271
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.10 E-value=0.005 Score=49.86 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998764
No 272
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.09 E-value=0.0046 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|+|-||+||||++-.+....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999999988887765
No 273
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.0084 Score=49.13 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|+|||||++.+.--.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45689999999999999999987543
No 274
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.09 E-value=0.01 Score=50.01 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.++|++|+||||++..+....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999888765
No 275
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.09 E-value=0.0046 Score=47.81 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+...|+|+|.+|+|||||.+.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 4556999999999999999999986
No 276
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.09 E-value=0.0052 Score=49.51 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 277
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.08 E-value=0.019 Score=49.22 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCC----CCCEEEEEEecCcccHHHHHHHHHHHh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSN----NFDFVIWEVVSRDLQLEKMQESIAKKI 219 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~I~~~l 219 (243)
.-+++-|+|.+|+|||||+.++.... .... .=..++|+....+|++..+.+ +++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 46788999999999999999997764 2111 112689999988888877543 34443
No 278
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.08 E-value=0.0064 Score=47.03 Aligned_cols=24 Identities=38% Similarity=0.702 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|+|..|+|||||+..+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999986
No 279
>PRK08356 hypothetical protein; Provisional
Probab=96.06 E-value=0.0057 Score=48.85 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 038742 163 VGIVGLHGMGGVGKTTLLTQIN 184 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~ 184 (243)
..+|.|.|++|+||||+|+.+-
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999993
No 280
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.06 E-value=0.012 Score=47.36 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEE
Q 038742 149 STLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEV 201 (243)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~ 201 (243)
..-...++.|. +..++.+.|++|.|||.||-...-+. -..++|+..+++.
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 34445566665 45689999999999999999888775 3457888887775
No 281
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.06 E-value=0.032 Score=49.76 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=30.1
Q ss_pred ccccHHH--HHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 144 VVGFQST--LDRVWRCLTEE--PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 144 ~vG~~~~--~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|.++. ...+..+.... ....+-|+|..|+|||+|++.+++..
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4575543 22333333322 24568899999999999999999986
No 282
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.06 E-value=0.0048 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|.|-||+||||++..+....
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~L 25 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAAL 25 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHH
Confidence 578999999999999998887775
No 283
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.05 E-value=0.0055 Score=54.48 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+.|+|+|..|.|||||++.+....
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999875
No 284
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.05 E-value=0.033 Score=50.33 Aligned_cols=57 Identities=26% Similarity=0.262 Sum_probs=35.7
Q ss_pred ccccHHH--HHHHHHHhcCC-CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC-EEEEEEe
Q 038742 144 VVGFQST--LDRVWRCLTEE-PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFD-FVIWEVV 202 (243)
Q Consensus 144 ~vG~~~~--~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~-~~~wv~v 202 (243)
++|-.+. ...+....... ...-+-|+|..|+|||+|++.+.+.. . +.+.+ .++|++.
T Consensus 108 v~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l-~-~~~~~~~v~yi~~ 168 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYV-V-QNEPDLRVMYITS 168 (440)
T ss_pred ccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHH-H-HhCCCCeEEEEEH
Confidence 4565433 23344444332 24468999999999999999999986 2 22233 3556654
No 285
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.05 E-value=0.005 Score=48.51 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 038742 165 IVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~ 185 (243)
+|+|.|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 286
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.05 E-value=0.0067 Score=48.18 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|+|+.|+|||||++.+....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 5689999999999999999998764
No 287
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.04 E-value=0.0057 Score=48.50 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 288
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.04 E-value=0.0056 Score=49.57 Aligned_cols=26 Identities=35% Similarity=0.314 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 289
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.04 E-value=0.0051 Score=45.98 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|+++|.+|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998875
No 290
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.03 E-value=0.0059 Score=49.80 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--.++|+|+.|+|||||...+..-.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34589999999999999999998653
No 291
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.03 E-value=0.0048 Score=46.44 Aligned_cols=21 Identities=38% Similarity=0.571 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~ 186 (243)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999886
No 292
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.03 E-value=0.0056 Score=45.99 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.++|.+|+|||||++.+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998774
No 293
>PLN02796 D-glycerate 3-kinase
Probab=96.03 E-value=0.0058 Score=52.95 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.-+|+|.|..|+|||||++.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 294
>PRK14532 adenylate kinase; Provisional
Probab=96.02 E-value=0.0059 Score=48.29 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.+.|++|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998765
No 295
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.01 E-value=0.057 Score=45.23 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHH
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
-.++.|.|.+|+||||++.++..+. - ..+=..++|++... +..++...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~-~-~~~g~~vl~iS~E~--~~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDL-I-TQHGVRVGTISLEE--PVVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH-H-HhcCceEEEEEccc--CHHHHHHHHHH
Confidence 4578899999999999999987764 2 12114577887755 33445544443
No 296
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.01 E-value=0.006 Score=41.99 Aligned_cols=23 Identities=39% Similarity=0.730 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++.+.|.+|+||||++..+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999986
No 297
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.01 E-value=0.0054 Score=46.78 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.++|.+|+|||||++.+.+..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998764
No 298
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.00 E-value=0.025 Score=46.14 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCc
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRD 205 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~ 205 (243)
.-.++.|.|.+|+|||||+..+..+. - + .-+.++|++...+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-R-DGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-h-cCCeEEEEEccCC
Confidence 46789999999999999999876543 1 1 2346788876543
No 299
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.00 E-value=0.0094 Score=53.23 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=35.9
Q ss_pred CCcccccHHHHHHHHHHhcC-------C---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 141 PPAVVGFQSTLDRVWRCLTE-------E---------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..++|.+..++.+...+.+ . .-+-+-++|++|+|||+||+.+....
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 34589999988887655421 0 23568899999999999999999865
No 300
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.00 E-value=0.0058 Score=48.19 Aligned_cols=39 Identities=28% Similarity=0.267 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEec
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVS 203 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 203 (243)
+..-+.++|..|+|||.||..+.+.. -. ..+ .+.+++++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~-~~-~g~-~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEA-IR-KGY-SVLFITAS 84 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHH-HH-TT---EEEEEHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHh-cc-CCc-ceeEeecC
Confidence 34569999999999999999999876 22 223 34666543
No 301
>PRK13768 GTPase; Provisional
Probab=96.00 E-value=0.0076 Score=50.27 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.|+|.||+||||++..+....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHH
Confidence 578999999999999998888776
No 302
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.00 E-value=0.011 Score=50.86 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-..|.++|+.|+||||+++.+....
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998865
No 303
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0064 Score=47.77 Aligned_cols=26 Identities=42% Similarity=0.433 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998653
No 304
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.00 E-value=0.012 Score=49.75 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=52.2
Q ss_pred CCcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEE-EEEecCc
Q 038742 141 PPAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVI-WEVVSRD 205 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~-wv~vs~~ 205 (243)
-.+++|.+..+.-|.+.+........-.+|++|.|||+-|....... --.+.|.|++ -.|+|..
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDE 99 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhccccc
Confidence 34578999999999999998888999999999999999999888887 5556687754 3455544
No 305
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.99 E-value=0.0055 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.++|.+|+||||+|+.+....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998875
No 306
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.99 E-value=0.0069 Score=48.86 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
..+.|.|+|+.|+|||||++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678999999999999999999764
No 307
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.99 E-value=0.011 Score=55.32 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=39.5
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.|.+++..+.+ +.+-++|..|+||||+|+.+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999998887654 456799999999999999998775
No 308
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.99 E-value=0.017 Score=49.47 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=28.4
Q ss_pred HHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 151 LDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 151 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+++.+.. .+..+|+|+|.+|+|||||+..+....
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444432 368899999999999999999988865
No 309
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.99 E-value=0.0069 Score=47.11 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.|.|+|+.|+||||+++.+.+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358889999999999999999875
No 310
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.99 E-value=0.0073 Score=46.72 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|++|+|.-|+|||||...+-...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 4799999999999999999997776
No 311
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.99 E-value=0.006 Score=46.30 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.++|.+|+|||||++.+.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999988753
No 312
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.98 E-value=0.0081 Score=47.20 Aligned_cols=43 Identities=23% Similarity=0.212 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHH
Q 038742 166 VGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQE 213 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 213 (243)
+-|.|.+|+|||+|+..+.... - +.. ..++|++... +...+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~-~-~~g-~~v~~~s~e~--~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG-L-ARG-EPGLYVTLEE--SPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-H-HCC-CcEEEEECCC--CHHHHHH
Confidence 6789999999999999886654 1 221 3466777654 3444433
No 313
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.98 E-value=0.0066 Score=48.98 Aligned_cols=36 Identities=28% Similarity=0.141 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEE
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEV 201 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~ 201 (243)
+-.|++|+|+.|+|||||.+.+..=. ..=+..+|+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEEC
Confidence 45699999999999999999997643 1123456663
No 314
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.98 E-value=0.01 Score=46.22 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=25.9
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 153 RVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 153 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+.+++...+...|.++|.+|+|||||...+...
T Consensus 5 ~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 5 SLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred HHHHHhcCCCccEEEEECCCCCCHHHHHHHHccC
Confidence 4555554444567889999999999999999754
No 315
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.014 Score=50.97 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=40.3
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|-+.....+...+..+++ +.+-|+|+.|+||||||..+....
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999988764 468899999999999999888876
No 316
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.97 E-value=0.029 Score=46.28 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHH----hcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRC----LTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~----L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.|..++.|++- +...+..-+-+||..|+|||+|++.+.+..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 5689999887777653 334466778889999999999999999987
No 317
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.97 E-value=0.0053 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.|+|.+|+|||||++.+.+..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 47899999999999999987764
No 318
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.97 E-value=0.0064 Score=46.00 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.|-++|..|.|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 457899999999999999998875
No 319
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.95 E-value=0.009 Score=47.23 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+.|.|+|+.|+|||||++.+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4679999999999999999998874
No 320
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0064 Score=49.92 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 321
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.95 E-value=0.0059 Score=51.38 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|.|-||+||||++..+....
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~L 26 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAM 26 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Confidence 689999999999999998766654
No 322
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.95 E-value=0.0066 Score=47.78 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.-.+++|+|+.|.|||||.+.+..+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3468999999999999999999643
No 323
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.95 E-value=0.0062 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.|+|.+|+|||||++.+.+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999987654
No 324
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.95 E-value=0.0062 Score=46.12 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~ 186 (243)
|.|+|++|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
No 325
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.0067 Score=48.86 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 326
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.94 E-value=0.0066 Score=49.24 Aligned_cols=26 Identities=38% Similarity=0.552 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999754
No 327
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.0065 Score=49.97 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+--.++|+|+.|+|||||.+.|.-=.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997643
No 328
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.93 E-value=0.006 Score=46.92 Aligned_cols=21 Identities=52% Similarity=0.844 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~ 186 (243)
|+|+|.+|+|||||.+.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999854
No 329
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.013 Score=53.03 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.|.+.+..+.+ +.+-++|+.|+||||+|+.+.+..
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999987765 567889999999999999998765
No 330
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.92 E-value=0.0065 Score=45.66 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 145 VGFQSTLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 145 vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|....++++.+.+.. ..-.-|-|.|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4556666666666654 334567899999999999999999986
No 331
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0068 Score=49.22 Aligned_cols=26 Identities=38% Similarity=0.402 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 332
>PRK01184 hypothetical protein; Provisional
Probab=95.92 E-value=0.0068 Score=47.76 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+|+|+|++|+||||+++ +...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 489999999999999987 4443
No 333
>PTZ00035 Rad51 protein; Provisional
Probab=95.91 E-value=0.056 Score=47.03 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccC----CCCCEEEEEEecCcccHHHHHHHHHHHhcC
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTS----NNFDFVIWEVVSRDLQLEKMQESIAKKIAF 221 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~ 221 (243)
.-.++-|+|.+|+|||||+..+.-.. ... ..=..++|+.-...|+++.+ ..++++++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 46789999999999999999887544 211 01134678888777777764 344555443
No 334
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.91 E-value=0.013 Score=46.23 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=27.8
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 151 LDRVWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 151 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
...++.++.. .+...|.|+|.+|+|||||++.+...
T Consensus 4 ~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 4456665532 45567889999999999999998875
No 335
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.91 E-value=0.0069 Score=48.90 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 336
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.91 E-value=0.0068 Score=49.97 Aligned_cols=26 Identities=42% Similarity=0.585 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998653
No 337
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.0074 Score=48.80 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+ .+++|+|..|.|||||++.+..-.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 36 899999999999999999998764
No 338
>PRK14531 adenylate kinase; Provisional
Probab=95.91 E-value=0.0082 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..|.|.|++|+||||+++.+....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998876
No 339
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.91 E-value=0.0091 Score=57.37 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=36.2
Q ss_pred cccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++.|.+..++.+.+++.. ...+-|-++|++|+||||||+.+.+..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 467999888888776632 134568899999999999999999976
No 340
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.91 E-value=0.017 Score=49.62 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++-+.|-||+||||+|-...-..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~ 25 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL 25 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH
Confidence 578899999999999997666554
No 341
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.90 E-value=0.0072 Score=48.16 Aligned_cols=26 Identities=35% Similarity=0.602 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998864
No 342
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.90 E-value=0.031 Score=45.57 Aligned_cols=25 Identities=40% Similarity=0.445 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+-|+|..|+|||.|.+.+++..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~ 58 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEA 58 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999986
No 343
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.0073 Score=48.77 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998753
No 344
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.89 E-value=0.064 Score=46.26 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccC----CCCCEEEEEEecCcccHHHHHHHHHHHhc
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTS----NNFDFVIWEVVSRDLQLEKMQESIAKKIA 220 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~I~~~l~ 220 (243)
.-.++-|.|.+|+|||||+..+.-.. ... ..-..++|+.-...|++..+ ..+++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 57799999999999999999887543 111 11235789988887887764 33445443
No 345
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=95.89 E-value=0.0063 Score=51.25 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|.|-||+||||++-.+....
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~L 25 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGL 25 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHH
Confidence 589999999999999888877754
No 346
>PHA02244 ATPase-like protein
Probab=95.88 E-value=0.021 Score=50.01 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 150 TLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 150 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....+..++..+ . -|-++|++|+|||+||+.+....
T Consensus 108 ~~~ri~r~l~~~-~-PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 108 ETADIAKIVNAN-I-PVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred HHHHHHHHHhcC-C-CEEEECCCCCCHHHHHHHHHHHh
Confidence 344555555443 2 35679999999999999999876
No 347
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.88 E-value=0.027 Score=48.82 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=28.9
Q ss_pred HHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 152 DRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 152 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+++.+.. .+..+|+|.|.+|+|||||+..+....
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555542 468899999999999999999988876
No 348
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.88 E-value=0.017 Score=46.44 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=32.1
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
++++|.+..+..+.-..... .-+-++|.+|+|||+||+.+-.=
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHh
Confidence 45788888777776666553 57889999999999999998764
No 349
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.88 E-value=0.022 Score=48.89 Aligned_cols=55 Identities=25% Similarity=0.183 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEec
Q 038742 146 GFQSTLDRVWRCLTE----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVS 203 (243)
Q Consensus 146 G~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 203 (243)
++........+++.. ....-+-++|..|+|||+||..+.+.. - ...+. +.+++++
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l-~-~~g~~-v~~~~~~ 193 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANEL-A-KKGVS-STLLHFP 193 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHH-H-HcCCC-EEEEEHH
Confidence 344444445555542 134578899999999999999999987 2 22333 4566654
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.88 E-value=0.0072 Score=47.61 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45689999999999999999998754
No 351
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.88 E-value=0.0074 Score=49.28 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45699999999999999999998764
No 352
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.88 E-value=0.0069 Score=46.17 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=18.8
Q ss_pred EEcCCCCcHHHHHHHHHhhh
Q 038742 168 LHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 168 I~G~gGiGKTtLa~~v~~~~ 187 (243)
|+|++|+||||+|+.+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999986
No 353
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.0072 Score=49.72 Aligned_cols=26 Identities=42% Similarity=0.586 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998653
No 354
>PRK06921 hypothetical protein; Provisional
Probab=95.87 E-value=0.049 Score=45.78 Aligned_cols=39 Identities=28% Similarity=0.258 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCC-CCEEEEEEec
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNN-FDFVIWEVVS 203 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~-F~~~~wv~vs 203 (243)
...-+-++|..|+|||+||..+.+.. ..+ -..+++++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l---~~~~g~~v~y~~~~ 155 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL---MRKKGVPVLYFPFV 155 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH---hhhcCceEEEEEHH
Confidence 35678999999999999999999976 222 3445666654
No 355
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.87 E-value=0.007 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
..-|.|+|.+|+|||||+..+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Confidence 356899999999999999998654
No 356
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=95.86 E-value=0.0073 Score=50.52 Aligned_cols=24 Identities=25% Similarity=0.654 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|.|-||+||||++.++....
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~L 26 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAY 26 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 689999999999999999988876
No 357
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.86 E-value=0.03 Score=46.04 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESI 215 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I 215 (243)
.-.++.|.|.+|+|||||+.++.... - +.. ..+++++. .-++.++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~-~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-L-QNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H-hCC-CcEEEEeC--CCCHHHHHHHH
Confidence 35699999999999999975544433 1 222 23455553 33455666665
No 358
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.86 E-value=0.013 Score=46.75 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+...|+|+|.+|+|||||.+.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 35689999999999999999998864
No 359
>PRK13976 thymidylate kinase; Provisional
Probab=95.85 E-value=0.049 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|+|=|..|+||||+++.+++..
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L 24 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYL 24 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998
No 360
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.85 E-value=0.0077 Score=48.60 Aligned_cols=26 Identities=38% Similarity=0.369 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998864
No 361
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.0068 Score=48.86 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++|+|..|.|||||++.+..-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998753
No 362
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=95.85 E-value=0.007 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|-|..|+||||+++.+.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999864
No 363
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.85 E-value=0.013 Score=53.73 Aligned_cols=53 Identities=26% Similarity=0.423 Sum_probs=40.8
Q ss_pred ccccHHHHHHHHHHhcCC-----CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEE
Q 038742 144 VVGFQSTLDRVWRCLTEE-----PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEV 201 (243)
Q Consensus 144 ~vG~~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~ 201 (243)
+.--..-++++..||.+. ..+++-+.|++|+||||.++.+.+.. -|+.+-|.+
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 444455677777777642 36789999999999999999999876 577777875
No 364
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.85 E-value=0.0078 Score=49.12 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+-.+++|+|..|.|||||++.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999875
No 365
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.84 E-value=0.0074 Score=48.74 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998764
No 366
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.84 E-value=0.14 Score=45.33 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHhcCC----CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEe
Q 038742 147 FQSTLDRVWRCLTEE----PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVV 202 (243)
Q Consensus 147 ~~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~v 202 (243)
..+....+..++.++ +-++|++||+.|+||||-...+.... .....=.-++.++.
T Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITt 241 (407)
T COG1419 183 FSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITT 241 (407)
T ss_pred HHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEe
Confidence 344555555555555 58899999999999987655555554 21122234556654
No 367
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.84 E-value=0.0089 Score=48.70 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|+|.|+.|+||||+++.+..+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
No 368
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.83 E-value=0.0071 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.719 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|++.|-||+||||++-.+....
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~L 24 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAF 24 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHH
Confidence 68899999999999887766644
No 369
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.008 Score=48.81 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998753
No 370
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.83 E-value=0.035 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-+-|+|..|+|||+|++.+.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999986
No 371
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.83 E-value=0.0079 Score=48.28 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998854
No 372
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.82 E-value=0.0089 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|-++|.+|+||||+|+.+..+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578889999999999999998764
No 373
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.82 E-value=0.017 Score=50.85 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+|+|..|+|||||+..+....
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l 29 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRL 29 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 374
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.82 E-value=0.035 Score=54.17 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=39.5
Q ss_pred ccccHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 144 VVGFQSTLDRVWRCLTE---EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 144 ~vG~~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++||+.+.+.|...+.. ..-.++.+.|..|||||+|++.|....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i 48 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPI 48 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHH
Confidence 68999999999998865 456799999999999999999999976
No 375
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.0079 Score=49.54 Aligned_cols=26 Identities=42% Similarity=0.442 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 376
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.82 E-value=0.019 Score=51.01 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHH-HHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhcC
Q 038742 147 FQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLL-TQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIAF 221 (243)
Q Consensus 147 ~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~ 221 (243)
|.+..++|..||.+..-..|.|.|+.|+||+.|+ .++..+. +..-..||.--+ +.-+-..+....+.++|-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-~~vL~IDC~~i~---~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-KNVLVIDCDQIV---KARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-CCEEEEEChHhh---hccChHHHHHHHHHhcCC
Confidence 4567899999999998899999999999999999 6666654 221122332222 223456677777777765
No 377
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.82 E-value=0.014 Score=46.18 Aligned_cols=38 Identities=24% Similarity=0.159 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 149 STLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+...++.+.... -..+.|+|..|.|||||++.+....
T Consensus 12 ~~~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 12 PLQAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444444444443 4689999999999999999988654
No 378
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.81 E-value=0.0081 Score=48.75 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998753
No 379
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.81 E-value=0.0077 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.762 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|++.|.+|+||||++..+....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998875
No 380
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.81 E-value=0.048 Score=44.91 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=34.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESI 215 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I 215 (243)
.-+++-|.|.+|+|||+||.++.... -..=+.++|++... ++..+.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 56799999999999999998865542 12235678888765 455555543
No 381
>PRK09183 transposase/IS protein; Provisional
Probab=95.81 E-value=0.0084 Score=50.20 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-..+.|+|++|+|||+||..+.+..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467799999999999999998764
No 382
>PRK02496 adk adenylate kinase; Provisional
Probab=95.81 E-value=0.0086 Score=47.20 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.|.|++|+||||+|+.+....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 383
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.81 E-value=0.0099 Score=51.27 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+++|++|+||||++..+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998876
No 384
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.81 E-value=0.016 Score=50.21 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=41.1
Q ss_pred CcccccHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|.++.++++++.+.+ ..-+|+-++|+.|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999865 367899999999999999999998876
No 385
>PRK14974 cell division protein FtsY; Provisional
Probab=95.81 E-value=0.018 Score=49.93 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|.++|++|+||||++..+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999999999999888888765
No 386
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.81 E-value=0.0079 Score=45.86 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.|.|+|.+|+|||||+..+.+.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999887754
No 387
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=95.80 E-value=0.0071 Score=45.95 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 038742 166 VGLHGMGGVGKTTLLTQIN 184 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~ 184 (243)
|+++|..|+|||||.+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 7899999999999999999
No 388
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.80 E-value=0.0082 Score=49.33 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998653
No 389
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.80 E-value=0.008 Score=46.13 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~ 186 (243)
|.++|.+|+|||||++.+.+.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999887664
No 390
>PRK14528 adenylate kinase; Provisional
Probab=95.79 E-value=0.01 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998765
No 391
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.79 E-value=1.3 Score=39.63 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhc
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIA 220 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~ 220 (243)
+-.++.|-|.+|+||||+|..+..+. -.... ..++|++. +.+...+...++....
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~-a~~~g-~~v~~fSl--Em~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENV-ALREG-KPVLFFSL--EMSAEQLGERLLASKS 247 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHH-HHhCC-CcEEEEEC--CCCHHHHHHHHHHHHc
Confidence 34578889999999999999998665 32222 23556553 4566777777665543
No 392
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.78 E-value=0.013 Score=56.62 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=40.2
Q ss_pred CcccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVG-IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.|.+++..+++. .+-++|..|+||||+|+.+.+..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999887654 57899999999999999998876
No 393
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=95.78 E-value=0.0082 Score=45.69 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 038742 165 IVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~ 185 (243)
+|+|+|.+|+|||||.+.+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 799999999999999999874
No 394
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=95.78 E-value=0.0085 Score=45.96 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~ 186 (243)
|.++|..|+|||||.+.+...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 789999999999999998653
No 395
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.77 E-value=0.015 Score=53.01 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=39.0
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+.....|.+++..+.+ +.+-++|+.|+||||+|+.+....
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987654 456789999999999999988764
No 396
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.77 E-value=0.0089 Score=47.94 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|..|.|||||++.+..-.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 397
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.77 E-value=0.0088 Score=48.84 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999998754
No 398
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.76 E-value=0.024 Score=55.35 Aligned_cols=47 Identities=28% Similarity=0.441 Sum_probs=37.7
Q ss_pred CCcccccHHHHHHHHHHhcC--------C-CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 141 PPAVVGFQSTLDRVWRCLTE--------E-PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~--------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...++|.+..++.+...+.. + +..++.++|+.|+|||+||+.+.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999988888887753 1 23578899999999999999999875
No 399
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.039 Score=51.21 Aligned_cols=51 Identities=25% Similarity=0.249 Sum_probs=38.5
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFD 195 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~ 195 (243)
+++-|.++-+.+|-+...- +..+-|-.+|++|.||||+|+.+.|.. +..|=
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFl 497 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFL 497 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCee
Confidence 4555677766666655432 257788999999999999999999976 66663
No 400
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.76 E-value=0.0088 Score=48.03 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 401
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.76 E-value=0.0078 Score=47.42 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+...|+|+|.+|+|||||++.+.+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456699999999999999999874
No 402
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.76 E-value=0.0085 Score=48.81 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||.+.+....
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 403
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.75 E-value=0.0075 Score=50.88 Aligned_cols=23 Identities=39% Similarity=0.804 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|.|..|+|||||++.+..-.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998764
No 404
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.75 E-value=0.02 Score=50.40 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=39.7
Q ss_pred CcccccHHHHHHHHHHhcCCCce-EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVG-IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|-+...+.|.+.+..+++. -+-++|+.|+||||||..+....
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999887644 68899999999999998877765
No 405
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.75 E-value=0.0089 Score=49.02 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 406
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.74 E-value=0.013 Score=55.02 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=39.0
Q ss_pred CcccccHHHHHHHHHHhcCC-----CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEE-----PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|-+..++++..+|... .-.++.++|++|+||||+++.+....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999998753 34579999999999999999999865
No 407
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.0089 Score=48.96 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 408
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.74 E-value=0.0079 Score=45.75 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|+|+|.+|+|||||.+.+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998763
No 409
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.74 E-value=0.0089 Score=49.63 Aligned_cols=25 Identities=28% Similarity=0.651 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|..|+|||||++.+....
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998864
No 410
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.74 E-value=0.009 Score=48.44 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||.+.+..-.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999999754
No 411
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.74 E-value=0.0092 Score=48.44 Aligned_cols=26 Identities=46% Similarity=0.544 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998653
No 412
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.74 E-value=0.016 Score=50.68 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.....++|||++|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999999986
No 413
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.73 E-value=0.037 Score=47.94 Aligned_cols=62 Identities=26% Similarity=0.289 Sum_probs=44.0
Q ss_pred cccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHH
Q 038742 143 AVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQ 212 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~ 212 (243)
.++|.++....+...+..+. -+-+.|.+|+|||+||+.+.... ...| .++..+....+.++.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l---~~~~---~~i~~t~~l~p~d~~ 86 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL---GLPF---VRIQCTPDLLPSDLL 86 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecCCCCCHHHhc
Confidence 37888877777766666553 36788999999999999999976 3333 455555555555543
No 414
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.73 E-value=0.062 Score=47.38 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR 204 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 204 (243)
.-.++.|.|.+|+|||||+..+.... ...-..++|++...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~---a~~g~~VlYvs~EE 120 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL---AKRGGKVLYVSGEE 120 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCc
Confidence 45699999999999999999998765 22224566776543
No 415
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=95.73 E-value=0.0088 Score=45.35 Aligned_cols=23 Identities=39% Similarity=0.423 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.|+|.+|+|||||.+.+.+..
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~ 24 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENK 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999888764
No 416
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.029 Score=47.31 Aligned_cols=49 Identities=20% Similarity=0.139 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQE 213 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~ 213 (243)
.-+++=|+|+.|+||||||-+++-.. +..-..++|+.-.+.+++..+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH
Confidence 45688899999999999999988866 55555889999999999876543
No 417
>PRK06526 transposase; Provisional
Probab=95.72 E-value=0.0089 Score=49.90 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...-+-++|++|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34568999999999999999998875
No 418
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.71 E-value=0.0091 Score=49.78 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 419
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.71 E-value=0.0096 Score=48.05 Aligned_cols=26 Identities=38% Similarity=0.309 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999764
No 420
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.71 E-value=0.036 Score=45.44 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=33.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQES 214 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~ 214 (243)
.-+++.|+|.+|+|||||+.++.... .+. =..++|++..++ +.++.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~-g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA--LKQ-GKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH--HhC-CCEEEEEEcCCC--HHHHHHH
Confidence 46799999999999999999985442 122 245778887654 3455554
No 421
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.71 E-value=0.02 Score=43.88 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 146 GFQSTLDRVWRCLT---EEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 146 G~~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.+.-++.+.+.+. ......|+++|++|+||+||.+.+..+.
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence 44444555544432 1234568899999999999999998864
No 422
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=95.70 E-value=0.0084 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|+|-||+||||+|..+....
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~L 24 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMM 24 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999988865
No 423
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.70 E-value=0.016 Score=48.23 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=36.3
Q ss_pred CcccccHHHHHH---HHHHhcCC------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDR---VWRCLTEE------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.++.... |++.|.+. ..+-|-.+|++|.|||.+|+.+.|..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 347888766543 66677653 47789999999999999999999976
No 424
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.70 E-value=0.0091 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.++|.+|+|||||.+.+.+..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999987654
No 425
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.70 E-value=0.054 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|.|-.|+||||+++.+....
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998865
No 426
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.70 E-value=0.067 Score=42.27 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=28.7
Q ss_pred HHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 153 RVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 153 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+.+.+..+++ ..+-++|+.|+||||+|..+.+..
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46666666665 678899999999999999998875
No 427
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.70 E-value=0.0096 Score=48.80 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|..|.|||||++.+..-.
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998764
No 428
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.69 E-value=0.041 Score=49.85 Aligned_cols=44 Identities=27% Similarity=0.275 Sum_probs=30.5
Q ss_pred ccccHH--HHHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 144 VVGFQS--TLDRVWRCLTEE--PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 144 ~vG~~~--~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|..+ ....+..+.... ...-+-|+|..|+|||+|++.+.+..
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456443 334444444332 34568899999999999999999987
No 429
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.69 E-value=0.0092 Score=45.87 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999998764
No 430
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.69 E-value=0.0093 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|.|..|.|||||++.+..-.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999865
No 431
>PLN02348 phosphoribulokinase
Probab=95.69 E-value=0.012 Score=51.79 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=28.5
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 152 DRVWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 152 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+.....+ ++.-+|+|.|..|+||||+|+.+.+..
T Consensus 37 ~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 37 SSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred HHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444443 467899999999999999999999976
No 432
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.68 E-value=0.012 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.++||.|.||||+.+.+....
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc
Confidence 47889999999999999998876
No 433
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.0099 Score=49.02 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 434
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.66 E-value=0.01 Score=48.61 Aligned_cols=26 Identities=42% Similarity=0.461 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998753
No 435
>PRK13974 thymidylate kinase; Provisional
Probab=95.66 E-value=0.071 Score=43.14 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCC---EEEEEEecCcccHHHHHHHHHH
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSFLHTSNNFD---FVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~---~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
.+|++.|..|+||||+++.++... ...+... .++-...+......+..++++.
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l-~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~ 59 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWL-PSSGLMPKGAKLIITREPGGTLLGKSLRELLL 59 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-HhcCccccCCeeeeeeCCCCCchHHHHHHHHc
Confidence 579999999999999999999987 4433321 1122222222335566666654
No 436
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.66 E-value=0.0091 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|.|-||+||||++-.+....
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~l 24 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVAL 24 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 78999999999999888876654
No 437
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.65 E-value=0.014 Score=53.97 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++..+|+|.|..|.||||||+.+....
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 467899999999999999999998754
No 438
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.65 E-value=0.0094 Score=48.90 Aligned_cols=26 Identities=46% Similarity=0.634 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34689999999999999999998753
No 439
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.65 E-value=0.01 Score=45.25 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.++|.+|+|||||++.+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999988864
No 440
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.63 E-value=0.012 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+-|+|+|.+|+|||||++.+.+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999765
No 441
>PRK15453 phosphoribulokinase; Provisional
Probab=95.63 E-value=0.012 Score=49.64 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|.|-.|+||||+|+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998754
No 442
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.63 E-value=0.01 Score=45.70 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.|.++|.+|+|||||.+.+.+.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988765
No 443
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.62 E-value=0.011 Score=47.33 Aligned_cols=26 Identities=42% Similarity=0.629 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998864
No 444
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.62 E-value=0.013 Score=47.02 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..|+|.|..|.|||||.+.+....
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999999875
No 445
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.60 E-value=0.018 Score=53.55 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|-+..++.|.+++..+++ +.+-++|+.|+||||+|+.+.+..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999988654 468899999999999999998875
No 446
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.019 Score=53.53 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=39.9
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+...+.|.+.+..+++ +.+-++|+.|+||||+|+.+.+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999988765 466899999999999999998875
No 447
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.60 E-value=0.024 Score=50.54 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=36.2
Q ss_pred CCcccccHHHHHHHHHHhc-------C---C--------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 141 PPAVVGFQSTLDRVWRCLT-------E---E--------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~-------~---~--------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..++|.++.++.+...+. . . .-..|-++|++|+|||+||+.+....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4567999998888866551 1 1 12578899999999999999999765
No 448
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.60 E-value=0.012 Score=46.02 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||.+.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998764
No 449
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.60 E-value=0.01 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.|+|.+|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998864
No 450
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.60 E-value=0.011 Score=48.78 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+-.+++|+|..|.|||||++.+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999875
No 451
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.60 E-value=0.02 Score=48.07 Aligned_cols=43 Identities=33% Similarity=0.481 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 145 VGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 145 vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|......+.+..+....-.+|.|.|..|.||||+++.+.+..
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 4555444444444444445689999999999999999886554
No 452
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.59 E-value=0.012 Score=44.70 Aligned_cols=26 Identities=42% Similarity=0.671 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44689999999999999999998864
No 453
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.011 Score=48.76 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998754
No 454
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.011 Score=46.96 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.-.+++|+|..|.|||||++.+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999963
No 455
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.59 E-value=0.011 Score=47.60 Aligned_cols=26 Identities=38% Similarity=0.351 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||.+.+..-.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 456
>PRK10908 cell division protein FtsE; Provisional
Probab=95.59 E-value=0.011 Score=48.03 Aligned_cols=26 Identities=38% Similarity=0.439 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 457
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.59 E-value=0.032 Score=48.37 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=42.8
Q ss_pred CCcccccHHHHH---HHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCE
Q 038742 141 PPAVVGFQSTLD---RVWRCLTEE--PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDF 196 (243)
Q Consensus 141 ~~~~vG~~~~~~---~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~ 196 (243)
.+.+||..+.++ -+.+++... .-+.|-|+|++|.|||+||-.+.... -...+|-.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~~ 97 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFVA 97 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCcee
Confidence 355889876554 467777765 46789999999999999999999988 65667743
No 458
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=95.59 E-value=0.013 Score=46.27 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+...-|+|+|.+|+|||||.+.+.+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45778999999999999999999984
No 459
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.58 E-value=0.011 Score=49.15 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
-.+++|+|+.|.|||||.+.+..-
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999984
No 460
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.58 E-value=0.011 Score=47.45 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998653
No 461
>PRK05973 replicative DNA helicase; Provisional
Probab=95.58 E-value=0.045 Score=45.16 Aligned_cols=26 Identities=31% Similarity=0.256 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.++-|.|.+|+||||++.++....
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35688899999999999999876654
No 462
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.58 E-value=0.011 Score=47.80 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34689999999999999999998754
No 463
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.57 E-value=0.094 Score=43.72 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=38.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhcC
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIAF 221 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~ 221 (243)
-.++.|-|.+|+|||++|..+..+. -.... ..+++++. +.+..++...++.....
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~-a~~~~-~~vly~Sl--Em~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNA-ALNGG-YPVLYFSL--EMSEEELAARLLARLSG 73 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHH-HHTTS-SEEEEEES--SS-HHHHHHHHHHHHHT
T ss_pred CcEEEEEecccCCchHHHHHHHHHH-HHhcC-CeEEEEcC--CCCHHHHHHHHHHHhhc
Confidence 3467788999999999999999987 33322 56666665 44667787777777654
No 464
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.57 E-value=0.01 Score=45.36 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
-|.|+|.+|+|||||++.+.++
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988653
No 465
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.57 E-value=0.012 Score=47.04 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998864
No 466
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.57 E-value=0.029 Score=52.74 Aligned_cols=53 Identities=28% Similarity=0.326 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhc
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIA 220 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~ 220 (243)
.-+|.-..|++|+||||||..|..+. -| .++-++.|.+-++..+-..|...+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq 377 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQ 377 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHh
Confidence 46688899999999999999999875 23 2577888888887777666665543
No 467
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.57 E-value=0.01 Score=45.51 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-|.|+|.+|+|||||...+.+..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~ 26 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT 26 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998753
No 468
>PRK08181 transposase; Validated
Probab=95.57 E-value=0.01 Score=49.95 Aligned_cols=42 Identities=24% Similarity=0.176 Sum_probs=29.4
Q ss_pred HHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEe
Q 038742 156 RCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVV 202 (243)
Q Consensus 156 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~v 202 (243)
+|+.. -.-+-++|++|+|||.||..+.+.. ......+.++++
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a---~~~g~~v~f~~~ 142 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLAL---IENGWRVLFTRT 142 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHH---HHcCCceeeeeH
Confidence 45442 3458999999999999999999876 222334456654
No 469
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.011 Score=48.96 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
.-.+++|+|..|.|||||++.+.-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 456899999999999999999963
No 470
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.56 E-value=0.014 Score=46.08 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....+|.|.|.+|+||||+|+.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999999875
No 471
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.56 E-value=0.011 Score=48.98 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
+-.+++|+|..|.|||||++.+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999985
No 472
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.56 E-value=0.024 Score=52.75 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=35.7
Q ss_pred CCcccccHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 141 PPAVVGFQSTLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++..+.|.+..+.|.+.... .+-.+|.++|+.|+||||+|+.+....
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 34456677777766665543 245589999999999999999999876
No 473
>COG4240 Predicted kinase [General function prediction only]
Probab=95.56 E-value=0.057 Score=44.06 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKK 218 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~ 218 (243)
+.=+++|.|+-|+|||||+..+++.. ..+.- +..+..++..-+-...=+..++++
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L-~~kg~-ert~~lSLDDlYlthadrl~La~q 103 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLL-AAKGL-ERTATLSLDDLYLTHADRLRLARQ 103 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHH-HHhcc-cceEEeehhhhhcchHHHHHHHHh
Confidence 56799999999999999999999987 33332 455555544333222223334444
No 474
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.56 E-value=0.025 Score=54.39 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=37.5
Q ss_pred CcccccHHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE---------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|.+..++.+.+.+.. .....+-++|+.|+|||+||+.+....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4478999988888888762 134578899999999999999998875
No 475
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=95.56 E-value=0.021 Score=46.00 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+|+|..|+||||+++.+....
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l 30 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL 30 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999998753
No 476
>PRK13973 thymidylate kinase; Provisional
Probab=95.55 E-value=0.075 Score=43.04 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..|+|-|..|+||||+++.++...
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l 27 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERL 27 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999987
No 477
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.021 Score=53.74 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPV-GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+.....|..++..+++ +-+-++|..|+||||+|+.+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 4578999999999999987653 567799999999999999998876
No 478
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.55 E-value=0.011 Score=47.33 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 038742 165 IVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~ 185 (243)
+++|+|..|.|||||++.++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999873
No 479
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=95.54 E-value=0.011 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.|.|+|.+|+|||||++.+.+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~ 24 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK 24 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998864
No 480
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.54 E-value=0.013 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+|+|+|+.|+||||+++.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999875
No 481
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.54 E-value=0.012 Score=48.87 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998753
No 482
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.54 E-value=0.012 Score=47.94 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998764
No 483
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.54 E-value=0.012 Score=47.35 Aligned_cols=26 Identities=38% Similarity=0.422 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998864
No 484
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.53 E-value=0.011 Score=48.83 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999997643
No 485
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.52 E-value=0.012 Score=48.98 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999754
No 486
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.52 E-value=0.012 Score=49.19 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+..-.
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 487
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.52 E-value=0.038 Score=47.56 Aligned_cols=92 Identities=21% Similarity=0.338 Sum_probs=60.3
Q ss_pred CcccccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHH-HHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTE----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLE-KMQESIA 216 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~-~i~~~I~ 216 (243)
..++|-.++..++-.+|.. +...-+.|+|+.|.|||+|...+..+..+..++| .-|........+ -.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHH
Confidence 3478988888888888865 3566788999999999999998888742344444 445555544332 2455666
Q ss_pred HHhcC---------CCHHHHHHHHHHHhh
Q 038742 217 KKIAF---------SSFHEKAQEIFKTMR 236 (243)
Q Consensus 217 ~~l~~---------~~~~~~~~~l~~~L~ 236 (243)
.|+.. .+..+...+|-+.|+
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~ 129 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALK 129 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHh
Confidence 66544 344444555656654
No 488
>PRK04328 hypothetical protein; Provisional
Probab=95.52 E-value=0.035 Score=46.19 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCc
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRD 205 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~ 205 (243)
.-+++-|.|.+|+|||+|+.++.... -..-+..+|++..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 46789999999999999999865543 122355788887663
No 489
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.51 E-value=0.016 Score=50.29 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR 204 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 204 (243)
.-+-++|..|+|||+||..+.+.. - ..-..+++++++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l-~--~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL-L--DRGKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH-H--HCCCeEEEEEHHH
Confidence 679999999999999999999986 2 2223456666543
No 490
>CHL00176 ftsH cell division protein; Validated
Probab=95.50 E-value=0.025 Score=53.33 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=33.6
Q ss_pred CcccccHHHHHHHHH---HhcCC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWR---CLTEE---------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~---~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.|.++..+++.+ .|... ..+-+-++|++|+|||+||+.+.+..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457888766555544 44332 24568899999999999999998865
No 491
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.019 Score=50.17 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.=+-|-.+|++|.|||-||++|+...
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 34578899999999999999999976
No 492
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=95.50 E-value=0.012 Score=45.20 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 038742 166 VGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~ 185 (243)
|.|+|.+|+|||||...+.+
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 78999999999999977754
No 493
>PRK00089 era GTPase Era; Reviewed
Probab=95.50 E-value=0.012 Score=50.05 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+...|+|+|.+|+|||||.+.+...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998765
No 494
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.50 E-value=0.012 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|.|-||+||||++-.+....
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~l 26 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAF 26 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999888877665
No 495
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.50 E-value=0.012 Score=48.48 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 496
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.49 E-value=0.022 Score=54.69 Aligned_cols=47 Identities=28% Similarity=0.488 Sum_probs=37.7
Q ss_pred CCcccccHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 141 PPAVVGFQSTLDRVWRCLTEE---------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...++|.+..++.+.+.+... ...++-++|+.|+|||+||+.+....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 345789888888888877531 24568899999999999999998875
No 497
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.49 E-value=0.047 Score=49.46 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=29.6
Q ss_pred ccccHHH--HHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 144 VVGFQST--LDRVWRCLTEE--PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 144 ~vG~~~~--~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|-.+. ...+..+.... ...-+-|+|..|+|||+|++.+.+..
T Consensus 118 v~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l 165 (450)
T PRK14087 118 VIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYI 165 (450)
T ss_pred cCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHH
Confidence 4565443 33333333322 23568899999999999999999965
No 498
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.48 E-value=0.013 Score=48.20 Aligned_cols=26 Identities=38% Similarity=0.649 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45689999999999999999998653
No 499
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.014 Score=45.66 Aligned_cols=26 Identities=42% Similarity=0.505 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 500
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.47 E-value=0.014 Score=45.21 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|..|.|||||.+.+....
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
Done!