Query 038742
Match_columns 243
No_of_seqs 163 out of 1743
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 03:57:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.8 3.1E-19 1.1E-23 162.9 12.0 101 142-243 128-248 (549)
2 1vt4_I APAF-1 related killer D 99.6 1.9E-15 6.4E-20 144.1 7.7 100 143-243 129-249 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.5 3.5E-14 1.2E-18 139.7 11.4 102 141-243 123-241 (1249)
4 3qfl_A MLA10; coiled-coil, (CC 99.5 7.7E-14 2.6E-18 101.2 9.7 80 6-85 2-83 (115)
5 1z6t_A APAF-1, apoptotic prote 99.4 3E-13 1E-17 124.1 10.6 101 141-243 123-241 (591)
6 1w5s_A Origin recognition comp 98.9 3.4E-09 1.2E-13 92.5 9.8 101 142-243 22-143 (412)
7 2qby_A CDC6 homolog 1, cell di 98.7 4.6E-08 1.6E-12 84.2 9.3 95 142-237 20-125 (386)
8 2qby_B CDC6 homolog 3, cell di 98.7 5.5E-08 1.9E-12 84.0 9.7 98 142-240 20-135 (384)
9 2qen_A Walker-type ATPase; unk 98.7 7E-08 2.4E-12 82.0 10.0 68 142-219 12-85 (350)
10 2v1u_A Cell division control p 98.7 8.8E-08 3E-12 82.5 9.6 95 142-237 19-127 (387)
11 1fnn_A CDC6P, cell division co 98.7 2.9E-07 1E-11 79.4 12.7 92 142-236 17-121 (389)
12 2fna_A Conserved hypothetical 98.4 1.2E-06 4E-11 74.5 9.6 67 142-218 13-84 (357)
13 1jbk_A CLPB protein; beta barr 98.2 1.7E-06 5.7E-11 66.6 6.1 46 142-187 22-67 (195)
14 3te6_A Regulatory protein SIR3 98.2 7.5E-06 2.6E-10 69.3 9.3 77 144-221 22-107 (318)
15 2p65_A Hypothetical protein PF 98.1 2.7E-06 9.1E-11 65.3 5.3 46 142-187 22-67 (187)
16 2chg_A Replication factor C sm 98.1 4.9E-06 1.7E-10 65.5 6.9 46 142-187 17-62 (226)
17 1njg_A DNA polymerase III subu 97.9 1E-05 3.4E-10 64.4 5.0 46 142-187 23-69 (250)
18 1sxj_B Activator 1 37 kDa subu 97.8 1.6E-05 5.6E-10 66.5 4.2 46 142-187 21-66 (323)
19 1iqp_A RFCS; clamp loader, ext 97.7 4E-05 1.4E-09 64.3 5.9 46 142-187 25-70 (327)
20 1hqc_A RUVB; extended AAA-ATPa 97.7 0.00013 4.3E-09 61.3 8.5 92 142-239 12-118 (324)
21 3n70_A Transport activator; si 97.6 6.2E-05 2.1E-09 56.0 4.5 45 143-187 2-48 (145)
22 3ec2_A DNA replication protein 97.6 0.0001 3.5E-09 56.6 5.9 41 147-187 19-62 (180)
23 3h4m_A Proteasome-activating n 97.6 6.4E-05 2.2E-09 62.0 5.0 46 142-187 17-75 (285)
24 3pxg_A Negative regulator of g 97.6 7.4E-05 2.5E-09 66.6 5.6 46 142-187 180-225 (468)
25 3bos_A Putative DNA replicatio 97.6 0.00015 5.1E-09 57.8 6.8 59 143-204 29-90 (242)
26 1sxj_D Activator 1 41 kDa subu 97.5 6.2E-05 2.1E-09 63.9 4.6 46 142-187 37-82 (353)
27 3syl_A Protein CBBX; photosynt 97.5 0.00016 5.6E-09 60.3 6.2 45 143-187 32-91 (309)
28 2chq_A Replication factor C sm 97.4 0.00014 4.7E-09 60.7 5.4 46 142-187 17-62 (319)
29 2w58_A DNAI, primosome compone 97.4 0.00015 5E-09 56.8 5.2 52 149-203 36-91 (202)
30 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.00017 5.7E-09 58.6 5.6 46 142-187 6-63 (262)
31 3b9p_A CG5977-PA, isoform A; A 97.4 0.00016 5.4E-09 60.1 5.5 46 142-187 21-78 (297)
32 3pvs_A Replication-associated 97.4 0.00011 3.7E-09 65.1 4.3 46 142-187 26-74 (447)
33 3pfi_A Holliday junction ATP-d 97.4 0.00015 5E-09 61.4 5.0 46 142-187 29-79 (338)
34 1jr3_A DNA polymerase III subu 97.4 0.00021 7.1E-09 61.1 5.9 46 142-187 16-62 (373)
35 3cf0_A Transitional endoplasmi 97.4 0.00017 5.7E-09 60.4 5.0 46 142-187 15-73 (301)
36 1sxj_A Activator 1 95 kDa subu 97.4 0.00017 5.9E-09 64.9 5.4 46 142-187 39-101 (516)
37 1sxj_E Activator 1 40 kDa subu 97.3 0.00012 4.2E-09 62.2 3.8 45 142-186 14-59 (354)
38 3uk6_A RUVB-like 2; hexameric 97.3 0.00028 9.5E-09 60.3 5.6 46 142-187 44-94 (368)
39 3d8b_A Fidgetin-like protein 1 97.3 0.00027 9.2E-09 60.6 5.5 46 142-187 84-141 (357)
40 3pxi_A Negative regulator of g 97.3 0.00026 8.9E-09 66.7 5.6 46 142-187 180-225 (758)
41 1sxj_C Activator 1 40 kDa subu 97.3 0.00026 8.7E-09 60.2 5.0 46 142-187 25-70 (340)
42 1ofh_A ATP-dependent HSL prote 97.3 0.00026 8.9E-09 58.8 4.9 46 142-187 15-74 (310)
43 3eie_A Vacuolar protein sortin 97.2 0.00031 1.1E-08 59.2 5.3 46 142-187 18-75 (322)
44 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00035 1.2E-08 59.0 5.5 46 142-187 12-69 (322)
45 1qvr_A CLPB protein; coiled co 97.2 0.00023 7.9E-09 68.0 4.6 46 142-187 170-215 (854)
46 1lv7_A FTSH; alpha/beta domain 97.2 0.00029 1E-08 57.2 4.7 46 142-187 12-69 (257)
47 3co5_A Putative two-component 97.2 9.2E-05 3.1E-09 54.9 1.4 46 142-187 4-51 (143)
48 1rz3_A Hypothetical protein rb 97.2 0.00043 1.5E-08 54.3 5.4 41 147-187 3-46 (201)
49 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0004 1.4E-08 65.4 6.1 46 142-187 186-231 (758)
50 1in4_A RUVB, holliday junction 97.2 0.00024 8.1E-09 60.4 3.7 46 142-187 25-75 (334)
51 3lw7_A Adenylate kinase relate 97.1 0.00023 7.9E-09 53.7 3.1 23 164-187 2-24 (179)
52 3c8u_A Fructokinase; YP_612366 97.1 0.00052 1.8E-08 54.0 5.2 39 149-187 6-46 (208)
53 1d2n_A N-ethylmaleimide-sensit 97.1 0.00064 2.2E-08 55.7 5.9 46 142-187 33-88 (272)
54 2hf9_A Probable hydrogenase ni 97.1 0.00056 1.9E-08 54.2 5.1 40 148-187 23-62 (226)
55 2kjq_A DNAA-related protein; s 97.1 0.00045 1.5E-08 51.7 4.1 26 162-187 35-60 (149)
56 4fcw_A Chaperone protein CLPB; 97.1 0.00041 1.4E-08 57.8 4.1 46 142-187 17-71 (311)
57 2r62_A Cell division protease 97.1 0.00029 1E-08 57.5 3.2 46 142-187 11-68 (268)
58 3kb2_A SPBC2 prophage-derived 97.0 0.00037 1.3E-08 52.6 3.5 24 164-187 2-25 (173)
59 3u61_B DNA polymerase accessor 97.0 0.00069 2.4E-08 56.9 5.4 46 142-187 26-72 (324)
60 3vfd_A Spastin; ATPase, microt 97.0 0.0007 2.4E-08 58.6 5.6 46 142-187 115-172 (389)
61 2wsm_A Hydrogenase expression/ 97.0 0.00053 1.8E-08 54.1 4.4 43 145-187 12-54 (221)
62 2qp9_X Vacuolar protein sortin 97.0 0.00061 2.1E-08 58.4 5.1 46 142-187 51-108 (355)
63 2bjv_A PSP operon transcriptio 97.0 0.00044 1.5E-08 56.5 3.9 46 142-187 6-53 (265)
64 1zp6_A Hypothetical protein AT 97.0 0.00041 1.4E-08 53.5 3.4 25 163-187 9-33 (191)
65 2zan_A Vacuolar protein sortin 97.0 0.00084 2.9E-08 59.3 5.6 46 142-187 134-191 (444)
66 1ojl_A Transcriptional regulat 97.0 0.00068 2.3E-08 56.8 4.8 46 142-187 2-49 (304)
67 2x8a_A Nuclear valosin-contain 97.0 0.00055 1.9E-08 56.5 4.1 46 142-187 10-68 (274)
68 2z4s_A Chromosomal replication 97.0 0.00081 2.8E-08 59.3 5.5 43 145-187 109-154 (440)
69 1qhx_A CPT, protein (chloramph 96.9 0.0005 1.7E-08 52.4 3.4 24 164-187 4-27 (178)
70 1ly1_A Polynucleotide kinase; 96.9 0.00056 1.9E-08 52.0 3.6 22 164-185 3-24 (181)
71 3vaa_A Shikimate kinase, SK; s 96.9 0.00053 1.8E-08 53.6 3.5 26 162-187 24-49 (199)
72 1kag_A SKI, shikimate kinase I 96.9 0.00042 1.4E-08 52.6 2.8 24 164-187 5-28 (173)
73 4b4t_M 26S protease regulatory 96.9 0.00079 2.7E-08 59.2 4.7 46 142-187 181-239 (434)
74 1kgd_A CASK, peripheral plasma 96.9 0.00057 1.9E-08 52.6 3.3 24 164-187 6-29 (180)
75 2px0_A Flagellar biosynthesis 96.9 0.0044 1.5E-07 51.7 9.0 26 162-187 104-129 (296)
76 4b4t_L 26S protease subunit RP 96.9 0.00084 2.9E-08 59.1 4.7 46 142-187 181-239 (437)
77 1nks_A Adenylate kinase; therm 96.9 0.00068 2.3E-08 52.1 3.7 24 164-187 2-25 (194)
78 4b4t_K 26S protease regulatory 96.9 0.00084 2.9E-08 58.9 4.6 46 142-187 172-230 (428)
79 3trf_A Shikimate kinase, SK; a 96.8 0.00073 2.5E-08 51.8 3.5 25 163-187 5-29 (185)
80 2cvh_A DNA repair and recombin 96.8 0.0035 1.2E-07 49.1 7.6 45 162-212 19-63 (220)
81 3tr0_A Guanylate kinase, GMP k 96.8 0.0007 2.4E-08 52.8 3.4 24 164-187 8-31 (205)
82 3hws_A ATP-dependent CLP prote 96.8 0.0014 4.6E-08 56.2 5.4 45 143-187 16-75 (363)
83 1kht_A Adenylate kinase; phosp 96.8 0.00078 2.7E-08 51.7 3.5 24 164-187 4-27 (192)
84 1knq_A Gluconate kinase; ALFA/ 96.8 0.00086 2.9E-08 51.0 3.7 25 163-187 8-32 (175)
85 3uie_A Adenylyl-sulfate kinase 96.8 0.00087 3E-08 52.3 3.8 28 160-187 22-49 (200)
86 1l8q_A Chromosomal replication 96.8 0.0018 6.2E-08 54.4 6.0 38 150-187 22-61 (324)
87 2jaq_A Deoxyguanosine kinase; 96.8 0.00081 2.8E-08 52.2 3.6 23 165-187 2-24 (205)
88 2ga8_A Hypothetical 39.9 kDa p 96.8 0.0017 5.8E-08 55.5 5.7 43 145-187 2-48 (359)
89 2bdt_A BH3686; alpha-beta prot 96.8 0.00085 2.9E-08 51.7 3.6 23 164-186 3-25 (189)
90 4eun_A Thermoresistant glucoki 96.8 0.00082 2.8E-08 52.5 3.5 27 161-187 27-53 (200)
91 4b4t_J 26S protease regulatory 96.8 0.00088 3E-08 58.3 4.0 46 142-187 148-206 (405)
92 2xxa_A Signal recognition part 96.8 0.017 5.8E-07 50.8 12.3 26 162-187 99-124 (433)
93 1ye8_A Protein THEP1, hypothet 96.8 0.0008 2.7E-08 51.9 3.3 23 165-187 2-24 (178)
94 2rhm_A Putative kinase; P-loop 96.8 0.00099 3.4E-08 51.3 3.9 25 163-187 5-29 (193)
95 1odf_A YGR205W, hypothetical 3 96.8 0.0014 4.8E-08 54.6 5.1 26 162-187 30-55 (290)
96 1zuh_A Shikimate kinase; alpha 96.8 0.00088 3E-08 50.6 3.5 26 162-187 6-31 (168)
97 3t61_A Gluconokinase; PSI-biol 96.8 0.00066 2.3E-08 53.0 2.9 25 163-187 18-42 (202)
98 1cke_A CK, MSSA, protein (cyti 96.8 0.00088 3E-08 53.1 3.6 24 164-187 6-29 (227)
99 2r44_A Uncharacterized protein 96.8 0.0009 3.1E-08 56.4 3.8 44 142-187 27-70 (331)
100 1um8_A ATP-dependent CLP prote 96.7 0.0018 6.1E-08 55.7 5.6 46 142-187 21-96 (376)
101 2j41_A Guanylate kinase; GMP, 96.7 0.00089 3E-08 52.2 3.4 25 163-187 6-30 (207)
102 2if2_A Dephospho-COA kinase; a 96.7 0.00088 3E-08 52.3 3.3 22 164-185 2-23 (204)
103 1ixz_A ATP-dependent metallopr 96.7 0.0016 5.3E-08 52.8 4.9 46 142-187 16-73 (254)
104 3asz_A Uridine kinase; cytidin 96.7 0.001 3.6E-08 52.1 3.8 26 162-187 5-30 (211)
105 4gp7_A Metallophosphoesterase; 96.7 0.0008 2.7E-08 51.3 3.0 22 163-184 9-30 (171)
106 1tev_A UMP-CMP kinase; ploop, 96.7 0.0011 3.8E-08 50.9 3.8 25 163-187 3-27 (196)
107 2bbw_A Adenylate kinase 4, AK4 96.7 0.001 3.5E-08 53.7 3.7 26 162-187 26-51 (246)
108 3iij_A Coilin-interacting nucl 96.7 0.00089 3E-08 51.2 3.2 25 163-187 11-35 (180)
109 2ze6_A Isopentenyl transferase 96.7 0.0011 3.8E-08 54.0 3.8 24 164-187 2-25 (253)
110 4b4t_H 26S protease regulatory 96.7 0.0013 4.5E-08 58.1 4.5 45 143-187 210-267 (467)
111 3dm5_A SRP54, signal recogniti 96.7 0.014 4.9E-07 51.3 11.0 26 162-187 99-124 (443)
112 3a00_A Guanylate kinase, GMP k 96.7 0.0008 2.7E-08 52.0 2.8 24 164-187 2-25 (186)
113 2c95_A Adenylate kinase 1; tra 96.7 0.0011 3.9E-08 51.1 3.6 25 163-187 9-33 (196)
114 1uf9_A TT1252 protein; P-loop, 96.7 0.0013 4.3E-08 51.1 3.9 24 162-185 7-30 (203)
115 1via_A Shikimate kinase; struc 96.7 0.0009 3.1E-08 51.0 2.9 23 165-187 6-28 (175)
116 1g8p_A Magnesium-chelatase 38 96.7 0.00087 3E-08 56.7 3.0 46 142-187 24-69 (350)
117 3cm0_A Adenylate kinase; ATP-b 96.7 0.0013 4.4E-08 50.4 3.8 24 164-187 5-28 (186)
118 3tau_A Guanylate kinase, GMP k 96.6 0.0011 3.7E-08 52.2 3.3 26 162-187 7-32 (208)
119 2qt1_A Nicotinamide riboside k 96.6 0.0011 3.9E-08 51.8 3.4 26 162-187 20-45 (207)
120 1jjv_A Dephospho-COA kinase; P 96.6 0.0012 4E-08 51.7 3.5 22 164-185 3-24 (206)
121 2p5t_B PEZT; postsegregational 96.6 0.0017 5.8E-08 52.8 4.5 41 147-187 11-56 (253)
122 3fwy_A Light-independent proto 96.6 0.0011 3.9E-08 55.8 3.5 27 161-187 46-72 (314)
123 3hu3_A Transitional endoplasmi 96.6 0.0017 6E-08 58.0 4.9 45 143-187 205-262 (489)
124 2plr_A DTMP kinase, probable t 96.6 0.0013 4.6E-08 51.3 3.8 24 164-187 5-28 (213)
125 1uj2_A Uridine-cytidine kinase 96.6 0.0013 4.5E-08 53.3 3.8 26 162-187 21-46 (252)
126 2qor_A Guanylate kinase; phosp 96.6 0.00095 3.3E-08 52.3 2.9 25 163-187 12-36 (204)
127 2yvu_A Probable adenylyl-sulfa 96.6 0.0014 4.8E-08 50.4 3.8 26 162-187 12-37 (186)
128 1y63_A LMAJ004144AAA protein; 96.6 0.0012 4.3E-08 50.8 3.5 24 163-186 10-33 (184)
129 1ukz_A Uridylate kinase; trans 96.6 0.0014 4.9E-08 51.0 3.9 26 162-187 14-39 (203)
130 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0016 5.5E-08 58.4 4.6 44 142-187 22-65 (500)
131 2bwj_A Adenylate kinase 5; pho 96.6 0.0013 4.4E-08 50.9 3.5 25 163-187 12-36 (199)
132 1gvn_B Zeta; postsegregational 96.6 0.0023 8E-08 53.1 5.3 26 162-187 32-57 (287)
133 1iy2_A ATP-dependent metallopr 96.6 0.0021 7.3E-08 52.8 5.0 46 142-187 40-97 (278)
134 3t15_A Ribulose bisphosphate c 96.6 0.0016 5.4E-08 54.2 4.1 26 162-187 35-60 (293)
135 1qf9_A UMP/CMP kinase, protein 96.6 0.0015 5E-08 50.2 3.7 25 163-187 6-30 (194)
136 2iyv_A Shikimate kinase, SK; t 96.6 0.001 3.4E-08 51.1 2.7 24 164-187 3-26 (184)
137 2c9o_A RUVB-like 1; hexameric 96.6 0.0023 7.8E-08 56.7 5.3 46 142-187 37-87 (456)
138 1lvg_A Guanylate kinase, GMP k 96.6 0.001 3.5E-08 52.0 2.8 24 164-187 5-28 (198)
139 4b4t_I 26S protease regulatory 96.6 0.0018 6.2E-08 56.7 4.5 45 143-187 183-240 (437)
140 2pbr_A DTMP kinase, thymidylat 96.5 0.0016 5.3E-08 50.1 3.6 23 165-187 2-24 (195)
141 1e6c_A Shikimate kinase; phosp 96.5 0.0012 4.1E-08 49.9 2.9 24 164-187 3-26 (173)
142 3kl4_A SRP54, signal recogniti 96.5 0.02 6.8E-07 50.3 10.9 26 162-187 96-121 (433)
143 3hr8_A Protein RECA; alpha and 96.5 0.0077 2.6E-07 51.5 8.1 67 162-236 60-136 (356)
144 2pt5_A Shikimate kinase, SK; a 96.5 0.0017 5.8E-08 48.9 3.6 23 165-187 2-24 (168)
145 2cdn_A Adenylate kinase; phosp 96.5 0.0016 5.6E-08 50.7 3.6 25 163-187 20-44 (201)
146 1n0w_A DNA repair protein RAD5 96.5 0.005 1.7E-07 49.0 6.6 49 162-211 23-75 (243)
147 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0018 6E-08 52.9 3.9 25 163-187 4-28 (260)
148 2vli_A Antibiotic resistance p 96.5 0.0012 4E-08 50.5 2.6 25 163-187 5-29 (183)
149 1znw_A Guanylate kinase, GMP k 96.5 0.0015 5.1E-08 51.3 3.3 26 162-187 19-44 (207)
150 2jeo_A Uridine-cytidine kinase 96.5 0.0015 5.3E-08 52.7 3.4 26 162-187 24-49 (245)
151 2ce7_A Cell division protein F 96.5 0.0026 9.1E-08 56.6 5.2 46 142-187 16-73 (476)
152 3aez_A Pantothenate kinase; tr 96.5 0.0015 5.2E-08 55.0 3.4 26 162-187 89-114 (312)
153 4a74_A DNA repair and recombin 96.5 0.0067 2.3E-07 47.8 7.1 45 162-207 24-72 (231)
154 3hjn_A DTMP kinase, thymidylat 96.5 0.0081 2.8E-07 46.9 7.4 74 165-241 2-85 (197)
155 1ex7_A Guanylate kinase; subst 96.5 0.0011 3.8E-08 51.5 2.4 24 164-187 2-25 (186)
156 2z0h_A DTMP kinase, thymidylat 96.5 0.0045 1.5E-07 47.6 5.9 23 165-187 2-24 (197)
157 2z43_A DNA repair and recombin 96.5 0.0078 2.7E-07 50.7 7.7 57 162-220 106-166 (324)
158 4e22_A Cytidylate kinase; P-lo 96.5 0.0018 6E-08 52.7 3.5 24 162-185 26-49 (252)
159 2zr9_A Protein RECA, recombina 96.5 0.0093 3.2E-07 50.9 8.1 45 162-209 60-104 (349)
160 2grj_A Dephospho-COA kinase; T 96.5 0.0021 7.1E-08 50.2 3.7 26 162-187 11-36 (192)
161 3sr0_A Adenylate kinase; phosp 96.4 0.01 3.4E-07 46.8 7.7 23 165-187 2-24 (206)
162 2wwf_A Thymidilate kinase, put 96.4 0.0019 6.5E-08 50.5 3.5 32 163-196 10-41 (212)
163 2j37_W Signal recognition part 96.4 0.036 1.2E-06 49.6 12.1 26 162-187 100-125 (504)
164 1nn5_A Similar to deoxythymidy 96.4 0.0021 7.2E-08 50.3 3.7 25 163-187 9-33 (215)
165 3umf_A Adenylate kinase; rossm 96.4 0.0023 8E-08 50.9 4.0 26 162-187 28-53 (217)
166 1xjc_A MOBB protein homolog; s 96.4 0.0021 7.3E-08 49.1 3.6 26 162-187 3-28 (169)
167 1gtv_A TMK, thymidylate kinase 96.4 0.00095 3.3E-08 52.3 1.6 24 164-187 1-24 (214)
168 1htw_A HI0065; nucleotide-bind 96.4 0.0022 7.4E-08 48.5 3.5 27 161-187 31-57 (158)
169 1z6g_A Guanylate kinase; struc 96.4 0.0016 5.3E-08 51.8 2.8 25 163-187 23-47 (218)
170 3fb4_A Adenylate kinase; psych 96.4 0.0022 7.6E-08 50.4 3.6 23 165-187 2-24 (216)
171 3ney_A 55 kDa erythrocyte memb 96.4 0.0022 7.6E-08 50.3 3.4 26 162-187 18-43 (197)
172 1aky_A Adenylate kinase; ATP:A 96.4 0.0024 8.2E-08 50.5 3.7 25 163-187 4-28 (220)
173 3p32_A Probable GTPase RV1496/ 96.4 0.0043 1.5E-07 53.0 5.5 37 151-187 65-103 (355)
174 2ehv_A Hypothetical protein PH 96.4 0.002 6.8E-08 51.6 3.2 24 162-185 29-52 (251)
175 1zd8_A GTP:AMP phosphotransfer 96.3 0.0022 7.7E-08 51.0 3.4 25 163-187 7-31 (227)
176 2i3b_A HCR-ntpase, human cance 96.3 0.0019 6.4E-08 50.3 2.9 23 165-187 3-25 (189)
177 1u94_A RECA protein, recombina 96.3 0.011 3.6E-07 50.7 7.7 45 162-209 62-106 (356)
178 2v54_A DTMP kinase, thymidylat 96.3 0.0023 7.9E-08 49.7 3.3 25 163-187 4-28 (204)
179 2pez_A Bifunctional 3'-phospho 96.3 0.0026 9E-08 48.5 3.6 25 163-187 5-29 (179)
180 1m7g_A Adenylylsulfate kinase; 96.3 0.0028 9.6E-08 49.8 3.8 27 161-187 23-49 (211)
181 3dl0_A Adenylate kinase; phosp 96.3 0.0025 8.6E-08 50.1 3.5 23 165-187 2-24 (216)
182 3tqc_A Pantothenate kinase; bi 96.3 0.0042 1.5E-07 52.4 5.0 26 162-187 91-116 (321)
183 3bh0_A DNAB-like replicative h 96.3 0.016 5.6E-07 48.6 8.6 52 162-218 67-118 (315)
184 1rj9_A FTSY, signal recognitio 96.3 0.0023 8E-08 53.6 3.3 26 162-187 101-126 (304)
185 1s96_A Guanylate kinase, GMP k 96.3 0.0025 8.6E-08 50.8 3.3 25 163-187 16-40 (219)
186 1ypw_A Transitional endoplasmi 96.3 0.002 7E-08 61.1 3.2 45 143-187 205-262 (806)
187 3tif_A Uncharacterized ABC tra 96.2 0.0024 8.2E-08 51.4 3.1 26 162-187 30-55 (235)
188 3e70_C DPA, signal recognition 96.2 0.0047 1.6E-07 52.3 5.1 27 161-187 127-153 (328)
189 1g41_A Heat shock protein HSLU 96.2 0.0033 1.1E-07 55.4 4.3 46 142-187 15-74 (444)
190 1xp8_A RECA protein, recombina 96.2 0.013 4.5E-07 50.3 7.9 45 162-209 73-117 (366)
191 3b85_A Phosphate starvation-in 96.2 0.0022 7.6E-08 50.7 2.8 24 163-186 22-45 (208)
192 2pcj_A ABC transporter, lipopr 96.2 0.0023 7.8E-08 51.2 2.9 26 162-187 29-54 (224)
193 1vht_A Dephospho-COA kinase; s 96.2 0.003 1E-07 49.8 3.6 23 163-185 4-26 (218)
194 1zak_A Adenylate kinase; ATP:A 96.2 0.0025 8.7E-08 50.4 3.1 25 163-187 5-29 (222)
195 2onk_A Molybdate/tungstate ABC 96.2 0.0027 9.3E-08 51.3 3.3 25 162-187 24-48 (240)
196 1j8m_F SRP54, signal recogniti 96.2 0.031 1.1E-06 46.5 9.7 25 163-187 98-122 (297)
197 3b9q_A Chloroplast SRP recepto 96.2 0.0031 1.1E-07 52.8 3.6 25 163-187 100-124 (302)
198 4eaq_A DTMP kinase, thymidylat 96.2 0.0076 2.6E-07 48.2 5.7 26 162-187 25-50 (229)
199 3ake_A Cytidylate kinase; CMP 96.2 0.0034 1.1E-07 48.8 3.6 23 165-187 4-26 (208)
200 3lnc_A Guanylate kinase, GMP k 96.2 0.0018 6.1E-08 51.7 2.0 22 163-184 27-48 (231)
201 2dhr_A FTSH; AAA+ protein, hex 96.2 0.0059 2E-07 54.7 5.5 46 142-187 31-88 (499)
202 2f6r_A COA synthase, bifunctio 96.2 0.003 1E-07 52.2 3.4 24 162-185 74-97 (281)
203 2qgz_A Helicase loader, putati 96.2 0.0044 1.5E-07 52.0 4.4 39 149-187 135-176 (308)
204 3tlx_A Adenylate kinase 2; str 96.2 0.0039 1.3E-07 50.3 4.0 26 162-187 28-53 (243)
205 1sq5_A Pantothenate kinase; P- 96.2 0.003 1E-07 53.0 3.3 26 162-187 79-104 (308)
206 2yhs_A FTSY, cell division pro 96.1 0.0054 1.8E-07 54.7 5.1 26 162-187 292-317 (503)
207 1oix_A RAS-related protein RAB 96.1 0.0033 1.1E-07 48.5 3.3 25 163-187 29-53 (191)
208 2f1r_A Molybdopterin-guanine d 96.1 0.0018 6.2E-08 49.6 1.7 24 164-187 3-26 (171)
209 2cbz_A Multidrug resistance-as 96.1 0.003 1E-07 50.9 3.1 26 162-187 30-55 (237)
210 2i1q_A DNA repair and recombin 96.1 0.014 4.6E-07 49.0 7.3 57 162-220 97-167 (322)
211 2d2e_A SUFC protein; ABC-ATPas 96.1 0.0033 1.1E-07 51.1 3.3 25 162-186 28-52 (250)
212 3nwj_A ATSK2; P loop, shikimat 96.1 0.0029 9.9E-08 51.5 3.0 25 163-187 48-72 (250)
213 1ji0_A ABC transporter; ATP bi 96.1 0.0029 1E-07 51.1 3.0 26 162-187 31-56 (240)
214 1b0u_A Histidine permease; ABC 96.1 0.0031 1.1E-07 51.7 3.1 26 162-187 31-56 (262)
215 1g6h_A High-affinity branched- 96.1 0.003 1E-07 51.6 3.0 26 162-187 32-57 (257)
216 1np6_A Molybdopterin-guanine d 96.1 0.0039 1.3E-07 47.8 3.5 25 163-187 6-30 (174)
217 3gfo_A Cobalt import ATP-bindi 96.1 0.0032 1.1E-07 52.0 3.1 25 162-186 33-57 (275)
218 3be4_A Adenylate kinase; malar 96.1 0.0038 1.3E-07 49.3 3.5 24 164-187 6-29 (217)
219 1cr0_A DNA primase/helicase; R 96.1 0.0096 3.3E-07 49.2 6.1 53 162-218 34-86 (296)
220 1e4v_A Adenylate kinase; trans 96.1 0.0039 1.3E-07 49.1 3.5 23 165-187 2-24 (214)
221 1yrb_A ATP(GTP)binding protein 96.1 0.0039 1.3E-07 50.4 3.5 26 162-187 13-38 (262)
222 2xb4_A Adenylate kinase; ATP-b 96.1 0.004 1.4E-07 49.4 3.6 23 165-187 2-24 (223)
223 2pze_A Cystic fibrosis transme 96.0 0.0032 1.1E-07 50.4 3.0 26 162-187 33-58 (229)
224 2zu0_C Probable ATP-dependent 96.0 0.0036 1.2E-07 51.4 3.3 25 162-186 45-69 (267)
225 2dyk_A GTP-binding protein; GT 96.0 0.0043 1.5E-07 45.8 3.5 23 164-186 2-24 (161)
226 2wji_A Ferrous iron transport 96.0 0.0042 1.4E-07 46.5 3.4 23 164-186 4-26 (165)
227 1mv5_A LMRA, multidrug resista 96.0 0.0035 1.2E-07 50.7 3.2 26 162-187 27-52 (243)
228 3k1j_A LON protease, ATP-depen 96.0 0.0054 1.9E-07 56.2 4.8 43 143-187 42-84 (604)
229 3r20_A Cytidylate kinase; stru 96.0 0.0042 1.4E-07 50.0 3.6 25 163-187 9-33 (233)
230 2olj_A Amino acid ABC transpor 96.0 0.0032 1.1E-07 51.6 3.0 26 162-187 49-74 (263)
231 3m6a_A ATP-dependent protease 96.0 0.0045 1.5E-07 56.1 4.1 46 142-187 81-132 (543)
232 1sgw_A Putative ABC transporte 96.0 0.0027 9.3E-08 50.4 2.4 26 162-187 34-59 (214)
233 3end_A Light-independent proto 96.0 0.004 1.4E-07 51.9 3.5 27 161-187 39-65 (307)
234 4g1u_C Hemin import ATP-bindin 96.0 0.0035 1.2E-07 51.5 3.1 26 162-187 36-61 (266)
235 2ffh_A Protein (FFH); SRP54, s 96.0 0.043 1.5E-06 48.1 10.2 25 163-187 98-122 (425)
236 1v5w_A DMC1, meiotic recombina 96.0 0.015 5.3E-07 49.3 7.2 56 162-219 121-180 (343)
237 2ff7_A Alpha-hemolysin translo 96.0 0.0035 1.2E-07 50.9 3.0 26 162-187 34-59 (247)
238 1vpl_A ABC transporter, ATP-bi 96.0 0.0034 1.2E-07 51.2 3.0 26 162-187 40-65 (256)
239 2f9l_A RAB11B, member RAS onco 96.0 0.0043 1.5E-07 48.0 3.4 24 163-186 5-28 (199)
240 2ghi_A Transport protein; mult 96.0 0.0037 1.3E-07 51.1 3.0 26 162-187 45-70 (260)
241 2ixe_A Antigen peptide transpo 96.0 0.0037 1.3E-07 51.5 3.0 26 162-187 44-69 (271)
242 2gno_A DNA polymerase III, gam 96.0 0.019 6.5E-07 48.0 7.4 73 146-220 1-75 (305)
243 3d3q_A TRNA delta(2)-isopenten 96.0 0.0049 1.7E-07 52.4 3.8 24 164-187 8-31 (340)
244 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0042 1.4E-07 49.0 3.2 26 162-187 22-47 (235)
245 2og2_A Putative signal recogni 95.9 0.0046 1.6E-07 53.0 3.6 25 163-187 157-181 (359)
246 1ak2_A Adenylate kinase isoenz 95.9 0.0048 1.7E-07 49.3 3.6 25 163-187 16-40 (233)
247 2yz2_A Putative ABC transporte 95.9 0.0038 1.3E-07 51.2 3.0 26 162-187 32-57 (266)
248 3lda_A DNA repair protein RAD5 95.9 0.019 6.3E-07 50.0 7.5 57 162-220 177-237 (400)
249 2qi9_C Vitamin B12 import ATP- 95.9 0.0038 1.3E-07 50.7 3.0 26 162-187 25-50 (249)
250 1vma_A Cell division protein F 95.9 0.005 1.7E-07 51.6 3.7 26 162-187 103-128 (306)
251 2zej_A Dardarin, leucine-rich 95.9 0.0034 1.2E-07 47.9 2.5 21 165-185 4-24 (184)
252 2ce2_X GTPase HRAS; signaling 95.9 0.0043 1.5E-07 45.7 3.0 23 165-187 5-27 (166)
253 1zj6_A ADP-ribosylation factor 95.9 0.0084 2.9E-07 45.7 4.7 35 151-186 5-39 (187)
254 2nq2_C Hypothetical ABC transp 95.9 0.0039 1.3E-07 50.8 2.9 26 162-187 30-55 (253)
255 2wjg_A FEOB, ferrous iron tran 95.9 0.0056 1.9E-07 46.6 3.6 24 163-186 7-30 (188)
256 1moz_A ARL1, ADP-ribosylation 95.9 0.006 2.1E-07 46.1 3.8 36 151-186 5-41 (183)
257 1tue_A Replication protein E1; 95.9 0.0069 2.3E-07 47.8 4.1 38 150-187 44-82 (212)
258 2ihy_A ABC transporter, ATP-bi 95.9 0.0041 1.4E-07 51.4 3.0 26 162-187 46-71 (279)
259 1z2a_A RAS-related protein RAB 95.9 0.0046 1.6E-07 45.9 3.0 25 163-187 5-29 (168)
260 2eyu_A Twitching motility prot 95.9 0.0055 1.9E-07 50.1 3.7 27 161-187 23-49 (261)
261 3sop_A Neuronal-specific septi 95.9 0.0049 1.7E-07 50.7 3.4 23 165-187 4-26 (270)
262 4edh_A DTMP kinase, thymidylat 95.9 0.025 8.5E-07 44.7 7.3 52 163-217 6-57 (213)
263 3upu_A ATP-dependent DNA helic 95.9 0.02 6.9E-07 50.6 7.5 40 147-187 30-69 (459)
264 3io5_A Recombination and repai 95.8 0.035 1.2E-06 46.7 8.4 52 164-221 29-80 (333)
265 1pzn_A RAD51, DNA repair and r 95.8 0.013 4.3E-07 50.0 5.9 47 162-209 130-180 (349)
266 1ltq_A Polynucleotide kinase; 95.8 0.0057 1.9E-07 50.7 3.6 23 164-186 3-25 (301)
267 1nlf_A Regulatory protein REPA 95.8 0.0051 1.7E-07 50.5 3.1 25 163-187 30-54 (279)
268 3con_A GTPase NRAS; structural 95.8 0.0053 1.8E-07 46.8 3.1 24 164-187 22-45 (190)
269 1u8z_A RAS-related protein RAL 95.8 0.0055 1.9E-07 45.3 3.1 24 164-187 5-28 (168)
270 4gzl_A RAS-related C3 botulinu 95.8 0.0063 2.2E-07 47.3 3.5 40 148-187 15-54 (204)
271 3crm_A TRNA delta(2)-isopenten 95.8 0.0064 2.2E-07 51.3 3.7 24 164-187 6-29 (323)
272 2v9p_A Replication protein E1; 95.8 0.0055 1.9E-07 51.3 3.3 26 161-186 124-149 (305)
273 1zu4_A FTSY; GTPase, signal re 95.8 0.0066 2.3E-07 51.2 3.8 26 162-187 104-129 (320)
274 3cf2_A TER ATPase, transitiona 95.8 0.0043 1.5E-07 58.6 2.8 45 143-187 205-262 (806)
275 2nzj_A GTP-binding protein REM 95.7 0.0049 1.7E-07 46.1 2.7 25 163-187 4-28 (175)
276 1fzq_A ADP-ribosylation factor 95.7 0.0094 3.2E-07 45.3 4.2 26 161-186 14-39 (181)
277 1c1y_A RAS-related protein RAP 95.7 0.0064 2.2E-07 45.0 3.2 23 165-187 5-27 (167)
278 2ged_A SR-beta, signal recogni 95.7 0.0058 2E-07 46.7 3.0 26 162-187 47-72 (193)
279 3t1o_A Gliding protein MGLA; G 95.7 0.0062 2.1E-07 46.5 3.2 25 163-187 14-38 (198)
280 2vp4_A Deoxynucleoside kinase; 95.7 0.0045 1.5E-07 49.4 2.4 25 162-186 19-43 (230)
281 2pjz_A Hypothetical protein ST 95.7 0.0055 1.9E-07 50.2 3.0 23 164-186 31-53 (263)
282 3pxi_A Negative regulator of g 95.7 0.013 4.5E-07 55.0 5.9 46 142-187 491-545 (758)
283 2gj8_A MNME, tRNA modification 95.7 0.0061 2.1E-07 46.1 3.0 23 164-186 5-27 (172)
284 1kao_A RAP2A; GTP-binding prot 95.7 0.0064 2.2E-07 44.9 3.0 24 164-187 4-27 (167)
285 1p9r_A General secretion pathw 95.7 0.013 4.3E-07 51.4 5.3 33 154-187 159-191 (418)
286 2erx_A GTP-binding protein DI- 95.7 0.0063 2.2E-07 45.2 3.0 23 164-186 4-26 (172)
287 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0078 2.7E-07 50.8 3.8 24 163-186 123-146 (331)
288 1z0j_A RAB-22, RAS-related pro 95.7 0.0065 2.2E-07 45.1 3.0 24 164-187 7-30 (170)
289 1ls1_A Signal recognition part 95.7 0.0073 2.5E-07 50.3 3.6 25 163-187 98-122 (295)
290 1ek0_A Protein (GTP-binding pr 95.7 0.0066 2.3E-07 45.0 3.1 23 165-187 5-27 (170)
291 1r8s_A ADP-ribosylation factor 95.7 0.0073 2.5E-07 44.7 3.3 22 166-187 3-24 (164)
292 1q3t_A Cytidylate kinase; nucl 95.7 0.0079 2.7E-07 48.1 3.7 26 162-187 15-40 (236)
293 1z08_A RAS-related protein RAB 95.7 0.0064 2.2E-07 45.2 3.0 25 163-187 6-30 (170)
294 3v9p_A DTMP kinase, thymidylat 95.6 0.018 6.1E-07 46.1 5.7 25 163-187 25-49 (227)
295 2ocp_A DGK, deoxyguanosine kin 95.6 0.0084 2.9E-07 48.1 3.8 25 163-187 2-26 (241)
296 1a7j_A Phosphoribulokinase; tr 95.6 0.004 1.4E-07 51.7 1.9 26 162-187 4-29 (290)
297 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0067 2.3E-07 46.1 3.0 25 163-187 7-31 (184)
298 3q72_A GTP-binding protein RAD 95.6 0.0066 2.3E-07 45.0 2.8 22 165-186 4-25 (166)
299 2www_A Methylmalonic aciduria 95.6 0.0082 2.8E-07 51.2 3.7 24 163-186 74-97 (349)
300 1ky3_A GTP-binding protein YPT 95.6 0.007 2.4E-07 45.5 3.0 26 162-187 7-32 (182)
301 1cp2_A CP2, nitrogenase iron p 95.6 0.0072 2.5E-07 49.1 3.3 24 164-187 2-25 (269)
302 2fn4_A P23, RAS-related protei 95.6 0.007 2.4E-07 45.5 3.0 26 162-187 8-33 (181)
303 2bbs_A Cystic fibrosis transme 95.6 0.0065 2.2E-07 50.5 2.9 26 162-187 63-88 (290)
304 1svm_A Large T antigen; AAA+ f 95.6 0.0074 2.5E-07 52.1 3.4 27 161-187 167-193 (377)
305 4hlc_A DTMP kinase, thymidylat 95.6 0.03 1E-06 43.9 6.7 50 164-217 3-52 (205)
306 2v3c_C SRP54, signal recogniti 95.6 0.0056 1.9E-07 53.8 2.6 25 163-187 99-123 (432)
307 2hxs_A RAB-26, RAS-related pro 95.6 0.0085 2.9E-07 45.0 3.4 24 163-186 6-29 (178)
308 1wms_A RAB-9, RAB9, RAS-relate 95.6 0.0074 2.5E-07 45.3 3.0 25 163-187 7-31 (177)
309 3exa_A TRNA delta(2)-isopenten 95.5 0.0086 2.9E-07 50.3 3.6 25 163-187 3-27 (322)
310 2lkc_A Translation initiation 95.5 0.0087 3E-07 44.9 3.4 25 162-186 7-31 (178)
311 1f6b_A SAR1; gtpases, N-termin 95.5 0.012 4.1E-07 45.5 4.3 33 154-186 15-48 (198)
312 3a8t_A Adenylate isopentenyltr 95.5 0.0082 2.8E-07 50.9 3.5 25 163-187 40-64 (339)
313 1nij_A Hypothetical protein YJ 95.5 0.007 2.4E-07 50.9 3.0 25 162-186 3-27 (318)
314 1g16_A RAS-related protein SEC 95.5 0.0075 2.6E-07 44.8 3.0 24 164-187 4-27 (170)
315 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0077 2.6E-07 45.6 3.0 24 164-187 5-28 (189)
316 1r2q_A RAS-related protein RAB 95.5 0.0084 2.9E-07 44.4 3.2 23 164-186 7-29 (170)
317 1z0f_A RAB14, member RAS oncog 95.5 0.008 2.7E-07 45.0 3.1 25 163-187 15-39 (179)
318 3zvl_A Bifunctional polynucleo 95.5 0.0083 2.8E-07 52.4 3.6 27 161-187 256-282 (416)
319 1svi_A GTP-binding protein YSX 95.5 0.008 2.7E-07 46.0 3.1 25 162-186 22-46 (195)
320 3q85_A GTP-binding protein REM 95.5 0.0098 3.4E-07 44.2 3.5 22 164-185 3-24 (169)
321 3ihw_A Centg3; RAS, centaurin, 95.5 0.0079 2.7E-07 46.0 3.0 24 163-186 20-43 (184)
322 3kkq_A RAS-related protein M-R 95.5 0.0081 2.8E-07 45.4 3.1 25 163-187 18-42 (183)
323 1r6b_X CLPA protein; AAA+, N-t 95.5 0.019 6.5E-07 53.9 6.2 46 142-187 458-512 (758)
324 3nh6_A ATP-binding cassette SU 95.5 0.0053 1.8E-07 51.5 2.1 26 162-187 79-104 (306)
325 1upt_A ARL1, ADP-ribosylation 95.5 0.0085 2.9E-07 44.6 3.1 25 163-187 7-31 (171)
326 1tq4_A IIGP1, interferon-induc 95.5 0.011 3.9E-07 51.6 4.2 24 162-185 68-91 (413)
327 1nrj_B SR-beta, signal recogni 95.5 0.0094 3.2E-07 46.6 3.4 26 162-187 11-36 (218)
328 1m2o_B GTP-binding protein SAR 95.4 0.0084 2.9E-07 46.1 3.0 25 162-186 22-46 (190)
329 2afh_E Nitrogenase iron protei 95.4 0.0093 3.2E-07 49.2 3.5 25 163-187 2-26 (289)
330 3c5c_A RAS-like protein 12; GD 95.4 0.0085 2.9E-07 45.8 3.0 25 163-187 21-45 (187)
331 3kta_A Chromosome segregation 95.4 0.0093 3.2E-07 45.4 3.2 22 164-185 27-48 (182)
332 1ksh_A ARF-like protein 2; sma 95.4 0.0092 3.1E-07 45.3 3.2 26 161-186 16-41 (186)
333 2bme_A RAB4A, RAS-related prot 95.4 0.0087 3E-07 45.3 3.0 25 163-187 10-34 (186)
334 2dr3_A UPF0273 protein PH0284; 95.4 0.0098 3.3E-07 47.4 3.4 40 162-204 22-61 (247)
335 1pui_A ENGB, probable GTP-bind 95.4 0.0048 1.6E-07 47.9 1.5 26 161-186 24-49 (210)
336 3foz_A TRNA delta(2)-isopenten 95.4 0.011 3.7E-07 49.6 3.7 25 163-187 10-34 (316)
337 3pqc_A Probable GTP-binding pr 95.4 0.0092 3.2E-07 45.4 3.1 25 163-187 23-47 (195)
338 2cxx_A Probable GTP-binding pr 95.4 0.0075 2.6E-07 45.8 2.6 23 165-187 3-25 (190)
339 3bc1_A RAS-related protein RAB 95.4 0.0092 3.1E-07 45.3 3.1 25 163-187 11-35 (195)
340 1mh1_A RAC1; GTP-binding, GTPa 95.4 0.0092 3.2E-07 45.0 3.1 24 164-187 6-29 (186)
341 3tw8_B RAS-related protein RAB 95.4 0.0087 3E-07 44.9 2.9 25 162-186 8-32 (181)
342 2oil_A CATX-8, RAS-related pro 95.4 0.0092 3.1E-07 45.7 3.1 25 163-187 25-49 (193)
343 2y8e_A RAB-protein 6, GH09086P 95.4 0.0092 3.1E-07 44.7 3.0 24 164-187 15-38 (179)
344 2a9k_A RAS-related protein RAL 95.4 0.0093 3.2E-07 45.0 3.1 25 163-187 18-42 (187)
345 2b6h_A ADP-ribosylation factor 95.4 0.0099 3.4E-07 45.7 3.2 29 158-186 24-52 (192)
346 3tui_C Methionine import ATP-b 95.4 0.0092 3.1E-07 51.2 3.3 26 162-187 53-78 (366)
347 1ega_A Protein (GTP-binding pr 95.4 0.01 3.5E-07 49.5 3.5 26 162-187 7-32 (301)
348 3t5g_A GTP-binding protein RHE 95.3 0.0094 3.2E-07 45.0 3.0 25 163-187 6-30 (181)
349 2bov_A RAla, RAS-related prote 95.3 0.0094 3.2E-07 45.9 3.1 26 162-187 13-38 (206)
350 3bwd_D RAC-like GTP-binding pr 95.3 0.0097 3.3E-07 44.8 3.1 24 163-186 8-31 (182)
351 2qnr_A Septin-2, protein NEDD5 95.3 0.0076 2.6E-07 50.3 2.6 21 166-186 21-41 (301)
352 3fvq_A Fe(3+) IONS import ATP- 95.3 0.0096 3.3E-07 51.0 3.2 26 162-187 29-54 (359)
353 3lv8_A DTMP kinase, thymidylat 95.3 0.03 1E-06 45.1 6.0 52 163-216 27-78 (236)
354 1vg8_A RAS-related protein RAB 95.3 0.0096 3.3E-07 46.0 3.0 26 162-187 7-32 (207)
355 3f9v_A Minichromosome maintena 95.3 0.0069 2.4E-07 55.5 2.5 46 142-187 295-351 (595)
356 2efe_B Small GTP-binding prote 95.3 0.0098 3.3E-07 44.8 3.0 25 163-187 12-36 (181)
357 2qm8_A GTPase/ATPase; G protei 95.3 0.011 3.9E-07 50.1 3.6 26 161-186 53-78 (337)
358 3dz8_A RAS-related protein RAB 95.3 0.011 3.7E-07 45.3 3.2 25 163-187 23-47 (191)
359 1qvr_A CLPB protein; coiled co 95.3 0.011 3.9E-07 56.3 4.0 45 143-187 559-612 (854)
360 2iwr_A Centaurin gamma 1; ANK 95.3 0.0074 2.5E-07 45.4 2.2 24 164-187 8-31 (178)
361 4tmk_A Protein (thymidylate ki 95.3 0.037 1.3E-06 43.7 6.4 52 164-217 4-55 (213)
362 1z47_A CYSA, putative ABC-tran 95.3 0.01 3.5E-07 50.8 3.3 26 162-187 40-65 (355)
363 2cjw_A GTP-binding protein GEM 95.3 0.011 3.8E-07 45.5 3.3 23 163-185 6-28 (192)
364 2atv_A RERG, RAS-like estrogen 95.3 0.01 3.4E-07 45.6 3.0 26 162-187 27-52 (196)
365 3clv_A RAB5 protein, putative; 95.3 0.01 3.5E-07 45.4 3.0 24 163-186 7-30 (208)
366 3cbq_A GTP-binding protein REM 95.3 0.0078 2.7E-07 46.5 2.4 23 162-184 22-44 (195)
367 2g6b_A RAS-related protein RAB 95.3 0.01 3.6E-07 44.5 3.1 25 163-187 10-34 (180)
368 1lw7_A Transcriptional regulat 95.2 0.01 3.6E-07 50.7 3.3 25 163-187 170-194 (365)
369 2fg5_A RAB-22B, RAS-related pr 95.2 0.01 3.6E-07 45.4 2.9 25 163-187 23-47 (192)
370 3oes_A GTPase rhebl1; small GT 95.2 0.011 3.8E-07 45.6 3.1 26 162-187 23-48 (201)
371 2yv5_A YJEQ protein; hydrolase 95.2 0.02 6.7E-07 47.8 4.8 33 151-187 156-188 (302)
372 3tkl_A RAS-related protein RAB 95.2 0.011 3.8E-07 45.1 3.1 25 163-187 16-40 (196)
373 3llu_A RAS-related GTP-binding 95.2 0.0095 3.2E-07 45.9 2.7 24 163-186 20-43 (196)
374 3jvv_A Twitching mobility prot 95.2 0.016 5.6E-07 49.5 4.3 27 161-187 121-147 (356)
375 2yyz_A Sugar ABC transporter, 95.2 0.011 3.9E-07 50.6 3.3 26 162-187 28-53 (359)
376 2p67_A LAO/AO transport system 95.2 0.012 4.1E-07 50.0 3.4 27 161-187 54-80 (341)
377 1gwn_A RHO-related GTP-binding 95.2 0.011 3.8E-07 46.1 3.0 26 162-187 27-52 (205)
378 3reg_A RHO-like small GTPase; 95.2 0.012 4E-07 45.2 3.1 25 163-187 23-47 (194)
379 3k53_A Ferrous iron transport 95.2 0.013 4.5E-07 47.8 3.6 25 163-187 3-27 (271)
380 2gf0_A GTP-binding protein DI- 95.2 0.012 4E-07 45.1 3.1 25 163-187 8-32 (199)
381 1zd9_A ADP-ribosylation factor 95.2 0.012 4E-07 45.0 3.1 25 163-187 22-46 (188)
382 2it1_A 362AA long hypothetical 95.2 0.012 4E-07 50.6 3.3 26 162-187 28-53 (362)
383 2gf9_A RAS-related protein RAB 95.1 0.012 4.1E-07 44.9 3.1 25 163-187 22-46 (189)
384 1zbd_A Rabphilin-3A; G protein 95.1 0.011 3.7E-07 45.6 2.9 25 163-187 8-32 (203)
385 1g29_1 MALK, maltose transport 95.1 0.012 4.1E-07 50.7 3.3 26 162-187 28-53 (372)
386 2fh5_B SR-beta, signal recogni 95.1 0.012 4E-07 45.9 3.1 25 163-187 7-31 (214)
387 2a5j_A RAS-related protein RAB 95.1 0.012 4.2E-07 44.9 3.1 25 163-187 21-45 (191)
388 2h92_A Cytidylate kinase; ross 95.1 0.012 4E-07 46.3 3.0 24 164-187 4-27 (219)
389 2ew1_A RAS-related protein RAB 95.1 0.012 4.1E-07 45.8 3.0 25 163-187 26-50 (201)
390 2ewv_A Twitching motility prot 95.1 0.014 4.7E-07 50.3 3.6 27 161-187 134-160 (372)
391 1p5z_B DCK, deoxycytidine kina 95.1 0.0085 2.9E-07 48.7 2.2 26 162-187 23-48 (263)
392 3rlf_A Maltose/maltodextrin im 95.1 0.012 4.2E-07 50.7 3.3 26 162-187 28-53 (381)
393 1x3s_A RAS-related protein RAB 95.1 0.013 4.3E-07 44.7 3.1 25 163-187 15-39 (195)
394 1v43_A Sugar-binding transport 95.1 0.013 4.3E-07 50.5 3.3 26 162-187 36-61 (372)
395 3lxx_A GTPase IMAP family memb 95.1 0.012 4E-07 47.1 2.9 26 162-187 28-53 (239)
396 2obl_A ESCN; ATPase, hydrolase 95.1 0.013 4.5E-07 49.9 3.3 34 154-187 61-95 (347)
397 2p5s_A RAS and EF-hand domain 95.1 0.013 4.4E-07 45.2 3.0 26 162-187 27-52 (199)
398 1z06_A RAS-related protein RAB 95.1 0.013 4.5E-07 44.7 3.0 25 163-187 20-44 (189)
399 3gmt_A Adenylate kinase; ssgci 95.1 0.014 4.9E-07 46.7 3.3 24 164-187 9-32 (230)
400 4a1f_A DNAB helicase, replicat 95.0 0.062 2.1E-06 45.6 7.5 52 162-218 45-96 (338)
401 2q3h_A RAS homolog gene family 95.0 0.012 4.1E-07 45.3 2.8 25 163-187 20-44 (201)
402 3ld9_A DTMP kinase, thymidylat 95.0 0.03 1E-06 44.6 5.2 56 161-217 19-74 (223)
403 2o52_A RAS-related protein RAB 95.0 0.012 4.2E-07 45.5 2.8 26 162-187 24-49 (200)
404 3eph_A TRNA isopentenyltransfe 95.0 0.016 5.4E-07 50.4 3.7 24 164-187 3-26 (409)
405 2bcg_Y Protein YP2, GTP-bindin 95.0 0.013 4.5E-07 45.3 3.0 25 163-187 8-32 (206)
406 1g8f_A Sulfate adenylyltransfe 95.0 0.028 9.7E-07 50.4 5.4 44 144-187 374-419 (511)
407 2orw_A Thymidine kinase; TMTK, 95.0 0.017 5.9E-07 44.5 3.5 24 164-187 4-27 (184)
408 3d31_A Sulfate/molybdate ABC t 95.0 0.01 3.4E-07 50.7 2.3 26 162-187 25-50 (348)
409 2fv8_A H6, RHO-related GTP-bin 94.9 0.014 4.8E-07 45.3 3.0 25 163-187 25-49 (207)
410 2qag_B Septin-6, protein NEDD5 94.9 0.013 4.3E-07 51.4 2.9 22 165-186 44-65 (427)
411 1ypw_A Transitional endoplasmi 94.9 0.011 3.7E-07 56.1 2.7 46 142-187 477-535 (806)
412 2qu8_A Putative nucleolar GTP- 94.9 0.016 5.5E-07 45.8 3.3 26 162-187 28-53 (228)
413 2j1l_A RHO-related GTP-binding 94.9 0.013 4.6E-07 45.8 2.8 25 162-186 33-57 (214)
414 3cph_A RAS-related protein SEC 94.9 0.015 5.1E-07 45.1 3.0 25 163-187 20-44 (213)
415 2atx_A Small GTP binding prote 94.9 0.015 5.1E-07 44.5 3.0 25 163-187 18-42 (194)
416 1u0l_A Probable GTPase ENGC; p 94.9 0.026 9E-07 47.0 4.7 34 151-187 160-193 (301)
417 3ice_A Transcription terminati 94.9 0.039 1.3E-06 47.8 5.7 52 153-206 163-216 (422)
418 2h17_A ADP-ribosylation factor 94.9 0.013 4.4E-07 44.4 2.6 24 163-186 21-44 (181)
419 2il1_A RAB12; G-protein, GDP, 94.9 0.012 4E-07 45.2 2.3 25 163-187 26-50 (192)
420 2gza_A Type IV secretion syste 94.9 0.012 4.2E-07 50.4 2.6 26 162-187 174-199 (361)
421 4bas_A ADP-ribosylation factor 94.9 0.019 6.4E-07 43.9 3.5 25 163-187 17-41 (199)
422 2hup_A RAS-related protein RAB 94.9 0.015 5.3E-07 45.0 3.0 26 162-187 28-53 (201)
423 1oxx_K GLCV, glucose, ABC tran 94.8 0.009 3.1E-07 51.1 1.7 26 162-187 30-55 (353)
424 2gco_A H9, RHO-related GTP-bin 94.8 0.016 5.4E-07 44.8 3.0 25 163-187 25-49 (201)
425 2j0v_A RAC-like GTP-binding pr 94.8 0.016 5.4E-07 45.1 3.0 25 163-187 9-33 (212)
426 3iev_A GTP-binding protein ERA 94.8 0.015 5.1E-07 48.6 3.0 26 162-187 9-34 (308)
427 1wf3_A GTP-binding protein; GT 94.8 0.015 5.2E-07 48.5 3.0 25 163-187 7-31 (301)
428 2rcn_A Probable GTPase ENGC; Y 94.8 0.017 5.7E-07 49.5 3.3 24 164-187 216-239 (358)
429 2fu5_C RAS-related protein RAB 94.8 0.0093 3.2E-07 45.1 1.5 24 163-186 8-31 (183)
430 2g3y_A GTP-binding protein GEM 94.8 0.017 5.8E-07 45.5 3.0 24 162-185 36-59 (211)
431 1a5t_A Delta prime, HOLB; zinc 94.8 0.028 9.5E-07 47.4 4.6 41 147-187 7-48 (334)
432 1mky_A Probable GTP-binding pr 94.8 0.036 1.2E-06 48.7 5.4 43 145-187 151-204 (439)
433 3gd7_A Fusion complex of cysti 94.7 0.017 5.9E-07 50.0 3.2 25 162-186 46-70 (390)
434 2qmh_A HPR kinase/phosphorylas 94.7 0.02 6.8E-07 44.9 3.3 25 163-187 34-58 (205)
435 2r8r_A Sensor protein; KDPD, P 94.7 0.022 7.4E-07 45.6 3.5 23 165-187 8-30 (228)
436 3q3j_B RHO-related GTP-binding 94.7 0.018 6.1E-07 45.2 3.1 25 163-187 27-51 (214)
437 2h57_A ADP-ribosylation factor 94.7 0.012 4.2E-07 44.8 2.0 25 163-187 21-45 (190)
438 4dzz_A Plasmid partitioning pr 94.7 0.017 5.9E-07 44.6 2.9 24 164-187 2-26 (206)
439 3fdi_A Uncharacterized protein 94.7 0.022 7.4E-07 44.6 3.5 25 163-187 6-30 (201)
440 3cr8_A Sulfate adenylyltranfer 94.7 0.027 9.3E-07 51.0 4.6 26 162-187 368-393 (552)
441 3ch4_B Pmkase, phosphomevalona 94.7 0.025 8.6E-07 44.3 3.7 26 162-187 10-35 (202)
442 2npi_A Protein CLP1; CLP1-PCF1 94.6 0.016 5.3E-07 51.4 2.8 26 162-187 137-162 (460)
443 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.013 4.6E-07 49.5 2.2 25 163-187 171-195 (330)
444 2f7s_A C25KG, RAS-related prot 94.6 0.017 5.9E-07 45.0 2.7 24 163-186 25-48 (217)
445 1yqt_A RNAse L inhibitor; ATP- 94.6 0.019 6.5E-07 51.9 3.3 25 163-187 312-336 (538)
446 2xtp_A GTPase IMAP family memb 94.5 0.024 8.4E-07 45.7 3.6 25 162-186 21-45 (260)
447 3io3_A DEHA2D07832P; chaperone 94.5 0.024 8.4E-07 48.3 3.7 30 158-187 13-42 (348)
448 1u0j_A DNA replication protein 94.5 0.046 1.6E-06 44.8 5.1 37 150-186 89-127 (267)
449 2axn_A 6-phosphofructo-2-kinas 94.5 0.024 8.4E-07 51.0 3.8 26 162-187 34-59 (520)
450 3th5_A RAS-related C3 botulinu 93.5 0.0065 2.2E-07 47.0 0.0 32 155-186 22-53 (204)
451 3iby_A Ferrous iron transport 94.5 0.022 7.5E-07 46.3 3.1 23 164-186 2-24 (256)
452 3kjh_A CO dehydrogenase/acetyl 94.5 0.015 5.2E-07 46.3 2.1 23 165-187 2-24 (254)
453 3lxw_A GTPase IMAP family memb 94.5 0.021 7E-07 46.1 2.9 25 163-187 21-45 (247)
454 2qag_C Septin-7; cell cycle, c 94.5 0.018 6.1E-07 50.4 2.7 22 166-187 34-55 (418)
455 3ozx_A RNAse L inhibitor; ATP 94.4 0.019 6.6E-07 51.8 3.0 25 163-187 294-318 (538)
456 3tmk_A Thymidylate kinase; pho 94.4 0.085 2.9E-06 41.7 6.3 25 163-187 5-29 (216)
457 1yqt_A RNAse L inhibitor; ATP- 94.4 0.022 7.6E-07 51.4 3.3 25 163-187 47-71 (538)
458 4b3f_X DNA-binding protein smu 94.4 0.094 3.2E-06 48.3 7.5 63 149-217 193-255 (646)
459 3ozx_A RNAse L inhibitor; ATP 94.4 0.022 7.6E-07 51.5 3.2 25 163-187 25-49 (538)
460 1f2t_A RAD50 ABC-ATPase; DNA d 94.4 0.031 1.1E-06 41.5 3.5 23 163-185 23-45 (149)
461 1bif_A 6-phosphofructo-2-kinas 94.4 0.025 8.7E-07 50.1 3.5 26 162-187 38-63 (469)
462 2dpy_A FLII, flagellum-specifi 94.4 0.024 8.4E-07 49.8 3.3 34 154-187 147-181 (438)
463 4dkx_A RAS-related protein RAB 94.4 0.024 8.3E-07 44.8 3.1 22 165-186 15-36 (216)
464 3cpj_B GTP-binding protein YPT 94.3 0.024 8.2E-07 44.6 3.0 25 163-187 13-37 (223)
465 3bk7_A ABC transporter ATP-bin 94.3 0.023 8E-07 52.1 3.3 25 163-187 382-406 (607)
466 2aka_B Dynamin-1; fusion prote 94.3 0.042 1.4E-06 45.1 4.6 26 162-187 25-50 (299)
467 3t5d_A Septin-7; GTP-binding p 94.3 0.019 6.7E-07 46.9 2.5 23 164-186 9-31 (274)
468 2x77_A ADP-ribosylation factor 94.3 0.03 1E-06 42.5 3.5 26 161-186 20-45 (189)
469 3def_A T7I23.11 protein; chlor 94.3 0.048 1.7E-06 44.2 4.8 26 162-187 35-60 (262)
470 3euj_A Chromosome partition pr 94.3 0.025 8.5E-07 50.3 3.3 24 164-187 30-53 (483)
471 4dhe_A Probable GTP-binding pr 94.3 0.013 4.4E-07 45.9 1.3 26 162-187 28-53 (223)
472 2ck3_D ATP synthase subunit be 94.2 0.11 3.8E-06 46.0 7.2 63 154-218 143-207 (482)
473 2qtf_A Protein HFLX, GTP-bindi 94.2 0.024 8.2E-07 48.6 3.0 26 162-187 178-203 (364)
474 3j16_B RLI1P; ribosome recycli 94.2 0.026 9E-07 51.7 3.3 24 164-187 379-402 (608)
475 3iqw_A Tail-anchored protein t 94.2 0.089 3E-06 44.5 6.3 30 158-187 11-40 (334)
476 1t9h_A YLOQ, probable GTPase E 94.2 0.012 3.9E-07 49.4 0.8 23 164-186 174-196 (307)
477 3b1v_A Ferrous iron uptake tra 94.2 0.031 1E-06 45.9 3.4 24 163-186 3-26 (272)
478 3cwq_A Para family chromosome 94.2 0.029 9.9E-07 44.0 3.1 23 165-187 2-25 (209)
479 1sky_E F1-ATPase, F1-ATP synth 94.1 0.14 4.9E-06 45.2 7.7 61 155-217 142-204 (473)
480 3j16_B RLI1P; ribosome recycli 94.1 0.028 9.6E-07 51.5 3.3 26 162-187 102-127 (608)
481 3fkq_A NTRC-like two-domain pr 94.1 0.034 1.2E-06 47.7 3.6 26 162-187 142-168 (373)
482 1h65_A Chloroplast outer envel 94.1 0.055 1.9E-06 44.0 4.7 26 162-187 38-63 (270)
483 2zts_A Putative uncharacterize 94.1 0.035 1.2E-06 44.1 3.4 50 162-215 29-78 (251)
484 2dby_A GTP-binding protein; GD 94.0 0.031 1.1E-06 48.0 3.2 22 165-186 3-24 (368)
485 2gks_A Bifunctional SAT/APS ki 94.0 0.081 2.8E-06 47.9 6.0 43 145-187 352-396 (546)
486 1ni3_A YCHF GTPase, YCHF GTP-b 94.0 0.033 1.1E-06 48.2 3.3 24 163-186 20-43 (392)
487 2yc2_C IFT27, small RAB-relate 94.0 0.012 4.2E-07 45.3 0.5 24 163-186 20-43 (208)
488 2qag_A Septin-2, protein NEDD5 93.9 0.023 7.7E-07 48.7 2.2 23 164-186 38-60 (361)
489 3a1s_A Iron(II) transport prot 93.9 0.031 1.1E-06 45.4 3.0 25 163-187 5-29 (258)
490 1puj_A YLQF, conserved hypothe 93.9 0.075 2.6E-06 43.8 5.3 26 162-187 119-144 (282)
491 2q6t_A DNAB replication FORK h 93.9 0.14 4.8E-06 44.9 7.3 52 162-217 199-250 (444)
492 3bgw_A DNAB-like replicative h 93.9 0.11 3.8E-06 45.7 6.7 50 162-216 196-245 (444)
493 1dek_A Deoxynucleoside monopho 93.9 0.042 1.4E-06 44.3 3.6 23 164-186 2-24 (241)
494 3bk7_A ABC transporter ATP-bin 93.9 0.03 1E-06 51.3 3.1 25 163-187 117-141 (607)
495 3gj0_A GTP-binding nuclear pro 93.9 0.018 6.1E-07 45.2 1.4 24 163-186 15-39 (221)
496 1fx0_B ATP synthase beta chain 93.9 0.13 4.4E-06 45.8 6.9 63 154-218 155-219 (498)
497 3hdt_A Putative kinase; struct 93.8 0.046 1.6E-06 43.5 3.7 25 163-187 14-38 (223)
498 2e87_A Hypothetical protein PH 93.8 0.036 1.2E-06 47.3 3.2 26 162-187 166-191 (357)
499 3b60_A Lipid A export ATP-bind 93.8 0.032 1.1E-06 50.9 3.1 26 162-187 368-393 (582)
500 3b5x_A Lipid A export ATP-bind 93.8 0.033 1.1E-06 50.8 3.2 26 162-187 368-393 (582)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.79 E-value=3.1e-19 Score=162.94 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=88.7
Q ss_pred CcccccHHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHh--hhcccCCCCCEEEEEEecCcc--cHHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTEE---PVGIVGLHGMGGVGKTTLLTQINN--SFLHTSNNFDFVIWEVVSRDL--QLEKMQES 214 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~v~~~F~~~~wv~vs~~~--~~~~i~~~ 214 (243)
+..+||+.++++|.++|..+ +.++|+|+||||+||||||+.+|+ +. ++..+|++++||++++.+ ++..++.+
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 33369999999999999754 689999999999999999999998 56 789999999999999985 89999999
Q ss_pred HHHHhcCC------------CHHHHHHHHHHHhhcC-ceEEC
Q 038742 215 IAKKIAFS------------SFHEKAQEIFKTMRNT-KFVLL 243 (243)
Q Consensus 215 I~~~l~~~------------~~~~~~~~l~~~L~~k-r~Llv 243 (243)
|+.+++.. +...+...+++.|.+| |||||
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlV 248 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFV 248 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEE
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEE
Confidence 99998751 3456789999999996 99987
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.58 E-value=1.9e-15 Score=144.11 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=83.4
Q ss_pred cccccHHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCE-EEEEEecCcccHHHHHHHHHHHhc
Q 038742 143 AVVGFQSTLDRVWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDF-VIWEVVSRDLQLEKMQESIAKKIA 220 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~-~~wv~vs~~~~~~~i~~~I~~~l~ 220 (243)
..+||+.++++|.++|.. ++.++|+|+||||+||||||+.+|++. ++..+|++ ++|+++++.++...++..|+..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 349999999999999986 568999999999999999999999987 77889987 999999999999888888877533
Q ss_pred C--------C--------CHHHHHHHHHHHh---hcCceEEC
Q 038742 221 F--------S--------SFHEKAQEIFKTM---RNTKFVLL 243 (243)
Q Consensus 221 ~--------~--------~~~~~~~~l~~~L---~~kr~Llv 243 (243)
. . +.+++...|++.| .+||||||
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLV 249 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEE
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEE
Confidence 2 0 2345566777766 67999986
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.52 E-value=3.5e-14 Score=139.67 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=83.4
Q ss_pred CCcccccHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhccc-CCCC-CEEEEEEecCccc--HHHHHHH
Q 038742 141 PPAVVGFQSTLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSFLHT-SNNF-DFVIWEVVSRDLQ--LEKMQES 214 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v-~~~F-~~~~wv~vs~~~~--~~~i~~~ 214 (243)
++.++||+.++++|.++|.. ++.++|+|+||||+||||||+.+|++. +. ..+| +.++||++++..+ ....+..
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDH-SLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCH-HHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcCh-hHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 45689999999999999964 578999999999999999999999986 43 5555 6778999998544 4445677
Q ss_pred HHHHhcC---------CCHHHHHHHHHHHhhcC--ceEEC
Q 038742 215 IAKKIAF---------SSFHEKAQEIFKTMRNT--KFVLL 243 (243)
Q Consensus 215 I~~~l~~---------~~~~~~~~~l~~~L~~k--r~Llv 243 (243)
++..+.. .+.+.+...++..|.+| |||||
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Llv 241 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLI 241 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEE
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 7777765 35688889999999877 99986
No 4
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.51 E-value=7.7e-14 Score=101.22 Aligned_cols=80 Identities=6% Similarity=0.071 Sum_probs=69.7
Q ss_pred ccccccchhhhhHHHhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchHhHHHHHHHHHHHHhHHHHHHHHH-HH
Q 038742 6 SVSFSCDDTISHCLDCITILLPLRTEFQKLIEARNDVQIRVLVAEQRQ-WRRLQQVQGWLSRVQDVEKEVPRLLAEI-IG 83 (243)
Q Consensus 6 ~~~~~~~~l~~~l~~~~~~~~~l~~~l~~L~~~l~~v~~~l~~a~~~~-~~~~~~v~~Wl~~l~~~~~d~ed~ld~~-~~ 83 (243)
.++.+++++.+.+......+.+++++++.|+++|..|+++|.+++.+. ...++.++.|+.++|+++||+||+||+| ++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888888877777799999999999999999999999999873 2345899999999999999999999999 66
Q ss_pred hh
Q 038742 84 KE 85 (243)
Q Consensus 84 ~~ 85 (243)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.44 E-value=3e-13 Score=124.07 Aligned_cols=101 Identities=19% Similarity=0.309 Sum_probs=79.6
Q ss_pred CCcccccHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhhccc-CCCC-CEEEEEEecCcccHHHHHHHH-
Q 038742 141 PPAVVGFQSTLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSFLHT-SNNF-DFVIWEVVSRDLQLEKMQESI- 215 (243)
Q Consensus 141 ~~~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v-~~~F-~~~~wv~vs~~~~~~~i~~~I- 215 (243)
++.++||+.+++.|.++|.. ++.++|+|+||||+||||||..+|++. .+ ..+| +.++|++++.. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 35689999999999999974 468999999999999999999999976 55 6789 58999999876 333444433
Q ss_pred --HHHhcC---------CCHHHHHHHHHHHhhc--CceEEC
Q 038742 216 --AKKIAF---------SSFHEKAQEIFKTMRN--TKFVLL 243 (243)
Q Consensus 216 --~~~l~~---------~~~~~~~~~l~~~L~~--kr~Llv 243 (243)
+..++. .+...+...++..|.+ +++|||
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLV 241 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLI 241 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEE
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEE
Confidence 444441 4567788889999887 688886
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.93 E-value=3.4e-09 Score=92.47 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=74.4
Q ss_pred CcccccHHHHHHHHHHh-c----C--CCceEEEE--EcCCCCcHHHHHHHHHhhhcccC---CCCCE-EEEEEecCcccH
Q 038742 142 PAVVGFQSTLDRVWRCL-T----E--EPVGIVGL--HGMGGVGKTTLLTQINNSFLHTS---NNFDF-VIWEVVSRDLQL 208 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~v~---~~F~~-~~wv~vs~~~~~ 208 (243)
+.++||+.+++.|..+| . . .....+.| +|++|+||||||+.+++.. ... ..|+. .+|+......+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCH
Confidence 56899999999999988 3 2 23445555 9999999999999999876 321 12332 577777677789
Q ss_pred HHHHHHHHHHhcC------CCHHHHHHHHHHHhh--cCceEEC
Q 038742 209 EKMQESIAKKIAF------SSFHEKAQEIFKTMR--NTKFVLL 243 (243)
Q Consensus 209 ~~i~~~I~~~l~~------~~~~~~~~~l~~~L~--~kr~Llv 243 (243)
..++..|+.+++. .+...+...+.+.|. +++++||
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llv 143 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVI 143 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 9999999999875 235566777777775 4566553
No 7
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.71 E-value=4.6e-08 Score=84.20 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=70.6
Q ss_pred CcccccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCC-CCEEEEEEecCcccHHHHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTE----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNN-FDFVIWEVVSRDLQLEKMQESIA 216 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~-F~~~~wv~vs~~~~~~~i~~~I~ 216 (243)
+.++||+.+++.+.+++.. .....+.|+|++|+||||||+.+++.. ..... -...+|+..+...+...++..++
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL-HKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH-HHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 6689999999999998874 456789999999999999999999976 22110 12467777766667778888887
Q ss_pred HHhcC------CCHHHHHHHHHHHhhc
Q 038742 217 KKIAF------SSFHEKAQEIFKTMRN 237 (243)
Q Consensus 217 ~~l~~------~~~~~~~~~l~~~L~~ 237 (243)
.+++. .+..+....+.+.+..
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~ 125 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRD 125 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 77654 2355666667777653
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=5.5e-08 Score=83.98 Aligned_cols=98 Identities=16% Similarity=0.023 Sum_probs=74.8
Q ss_pred CcccccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhcccC----CC--CCEEEEEEecCcc-cHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTE----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTS----NN--FDFVIWEVVSRDL-QLEK 210 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~----~~--F~~~~wv~vs~~~-~~~~ 210 (243)
+.++||+..++.+..+|.. ...+.+.|+|++|+||||||+.+++.. ... .. ....+|+..+... +...
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI-EEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH-HHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH-HHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 5689999999999877754 356789999999999999999999975 221 11 2356788877767 8888
Q ss_pred HHHHHHHHhcC-------CCHHHHHHHHHHHhhcCce
Q 038742 211 MQESIAKKIAF-------SSFHEKAQEIFKTMRNTKF 240 (243)
Q Consensus 211 i~~~I~~~l~~-------~~~~~~~~~l~~~L~~kr~ 240 (243)
++..++.++.. .+...+...+.+.+..++.
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 135 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA 135 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC
Confidence 99999988832 3446677788888877663
No 9
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.70 E-value=7e-08 Score=82.01 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=53.4
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcc------cHHHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDL------QLEKMQESI 215 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~------~~~~i~~~I 215 (243)
+.++||+.+++.|.+++... +++.|+|++|+|||||++.+.+.. . .+|+...... +...++..+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHH
Confidence 56899999999999988764 789999999999999999999864 1 5677665432 556666666
Q ss_pred HHHh
Q 038742 216 AKKI 219 (243)
Q Consensus 216 ~~~l 219 (243)
...+
T Consensus 82 ~~~l 85 (350)
T 2qen_A 82 QSTI 85 (350)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 6544
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.66 E-value=8.8e-08 Score=82.49 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=72.6
Q ss_pred CcccccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhcccC----CCCCEEEEEEecCcccHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTE----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTS----NNFDFVIWEVVSRDLQLEKMQE 213 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~ 213 (243)
+.++||+..++.+..+|.. ...+.+.|+|++|+||||||+.+++.. ... ..--..+|+..+...+...++.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL-EARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH-HHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH-HHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 5689999999999998843 456789999999999999999999875 221 0012357777777778888999
Q ss_pred HHHHHhcC------CCHHHHHHHHHHHhhc
Q 038742 214 SIAKKIAF------SSFHEKAQEIFKTMRN 237 (243)
Q Consensus 214 ~I~~~l~~------~~~~~~~~~l~~~L~~ 237 (243)
.++.+++. .+..++...+.+.+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 127 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSR 127 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 99998875 2356667777777743
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.65 E-value=2.9e-07 Score=79.39 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=71.1
Q ss_pred CcccccHHHHHHHHHHhcC----CCce--EEEEEcCCCCcHHHHHHHHHhhhcccCCCC-CEEEEEEecCcccHHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTE----EPVG--IVGLHGMGGVGKTTLLTQINNSFLHTSNNF-DFVIWEVVSRDLQLEKMQES 214 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F-~~~~wv~vs~~~~~~~i~~~ 214 (243)
+.++||+..++.+..++.. .... .+.|+|++|+|||||++.+.+.. .... -..+|+..+...+...++..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHHH
Confidence 5689999999999998865 2333 89999999999999999999986 3321 24567777777788899999
Q ss_pred HHHHhcC------CCHHHHHHHHHHHhh
Q 038742 215 IAKKIAF------SSFHEKAQEIFKTMR 236 (243)
Q Consensus 215 I~~~l~~------~~~~~~~~~l~~~L~ 236 (243)
++..++. .+...+...+.+.+.
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLR 121 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHh
Confidence 9988865 245666666777664
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.40 E-value=1.2e-06 Score=74.46 Aligned_cols=67 Identities=12% Similarity=0.176 Sum_probs=50.8
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCc-----ccHHHHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRD-----LQLEKMQESIA 216 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~-----~~~~~i~~~I~ 216 (243)
+.++||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+.. ..+ .+|+..... .+...++..+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NLP---YIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TCC---EEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CCC---EEEEEchhhccccCCCHHHHHHHHH
Confidence 568999999999999 765 699999999999999999999876 222 578876642 34455555544
Q ss_pred HH
Q 038742 217 KK 218 (243)
Q Consensus 217 ~~ 218 (243)
+.
T Consensus 83 ~~ 84 (357)
T 2fna_A 83 KE 84 (357)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 13
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.23 E-value=1.7e-06 Score=66.59 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=41.3
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|+++.++.+.+.+.......+-|+|++|+||||||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999988766778899999999999999999875
No 14
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.17 E-value=7.5e-06 Score=69.26 Aligned_cols=77 Identities=12% Similarity=0.053 Sum_probs=57.8
Q ss_pred ccccHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCC---C-C-EEEEEEecCcccHHHHHHH
Q 038742 144 VVGFQSTLDRVWRCLTE----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNN---F-D-FVIWEVVSRDLQLEKMQES 214 (243)
Q Consensus 144 ~vG~~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~---F-~-~~~wv~vs~~~~~~~i~~~ 214 (243)
+.||+++++.|...|.. .....+-|+|++|+|||++++.|.+.. ..... . . .++.++...-.+...++..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L-~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL-ITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH-HHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 68999999999887764 467788999999999999999999987 32211 1 1 2445555555678889999
Q ss_pred HHHHhcC
Q 038742 215 IAKKIAF 221 (243)
Q Consensus 215 I~~~l~~ 221 (243)
|++++.+
T Consensus 101 I~~~L~g 107 (318)
T 3te6_A 101 IWFAISK 107 (318)
T ss_dssp HHHHHSC
T ss_pred HHHHhcC
Confidence 9999965
No 15
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.13 E-value=2.7e-06 Score=65.33 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=41.2
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|++..++.+.+.+.......+-|+|++|+||||||+.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999988766777899999999999999999875
No 16
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.12 E-value=4.9e-06 Score=65.48 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=40.7
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|++..++.+.+++.......+.|+|++|+||||||+.+++..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999988765569999999999999999999874
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.91 E-value=1e-05 Score=64.41 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=40.3
Q ss_pred CcccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEP-VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|++..++.+..++.... .+.+.|+|++|+||||||+.+++..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999997653 4588999999999999999999876
No 18
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=1.6e-05 Score=66.53 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=40.8
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|++..++.+.+++..+..+.+-++|++|+||||+|+.+.+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999999999988765559999999999999999999875
No 19
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=4e-05 Score=64.26 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=41.1
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|++..++.+.+++..+..+.+-++|++|+||||+|+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999999999988766669999999999999999999875
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.69 E-value=0.00013 Score=61.32 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=57.6
Q ss_pred CcccccHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHH
Q 038742 142 PAVVGFQSTLDRVWRCLTE-----EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIA 216 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~ 216 (243)
.+++|++..+..+..++.. .....+-|+|++|+||||||+.+++.. ...| .++..+.......+...+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~---~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNL---RVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCCE---EEECTTTCCSHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCCE---EEEeccccCChHHHHHHHH
Confidence 4589999998888887753 244678899999999999999999976 3222 3444443334444444332
Q ss_pred HHhcC------CC----HHHHHHHHHHHhhcCc
Q 038742 217 KKIAF------SS----FHEKAQEIFKTMRNTK 239 (243)
Q Consensus 217 ~~l~~------~~----~~~~~~~l~~~L~~kr 239 (243)
..+.. ++ .......|...+.+.+
T Consensus 86 ~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~ 118 (324)
T 1hqc_A 86 NSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFV 118 (324)
T ss_dssp TTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSE
T ss_pred HhccCCCEEEEECCcccccchHHHHHHHHHhhh
Confidence 21222 11 1334556666666543
No 21
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.58 E-value=6.2e-05 Score=56.01 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=34.9
Q ss_pred cccccHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++|.+..+.++.+.+.. ....-|-|+|.+|+|||+||+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999888888887753 222346799999999999999999864
No 22
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.58 E-value=0.0001 Score=56.64 Aligned_cols=41 Identities=22% Similarity=0.179 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 147 FQSTLDRVWRCLTE---EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 147 ~~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.....+.+.+++.+ .+-..+.|+|++|+|||||++.+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555555543 245789999999999999999999976
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.58 E-value=6.4e-05 Score=62.04 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=38.8
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.|.+.+.. ....-+-|+|++|+||||||+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4589999999999887743 245678999999999999999999876
No 24
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.57 E-value=7.4e-05 Score=66.57 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|++..++.++..|......-+-++|.+|+|||+||+.+....
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999977555556799999999999999999875
No 25
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.56 E-value=0.00015 Score=57.78 Aligned_cols=59 Identities=10% Similarity=0.016 Sum_probs=41.1
Q ss_pred ccccc---HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC
Q 038742 143 AVVGF---QSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR 204 (243)
Q Consensus 143 ~~vG~---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 204 (243)
+++|. +..++.+..++.......+-|+|++|+||||||+.+.+.. ... .....|+..+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~-~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA-NEL--ERRSFYIPLGI 90 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH-HHT--TCCEEEEEGGG
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEEHHH
Confidence 45552 4556667766666567789999999999999999999976 322 23345666543
No 26
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.55 E-value=6.2e-05 Score=63.91 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=40.4
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.+..++.......+-++|++|+||||||+.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999988755558999999999999999999875
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.47 E-value=0.00016 Score=60.25 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=36.0
Q ss_pred cccccHHHHHHHHHHhc---------------CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLT---------------EEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++|.+..++.+.+++. ......+-|+|++|+|||+||+.+.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 47899888888776653 2345578999999999999999888876
No 28
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.45 E-value=0.00014 Score=60.73 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=40.5
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|++..++.+.+++..+..+.+-++|++|+||||+|+.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 4589999999999999988765558999999999999999999874
No 29
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.44 E-value=0.00015 Score=56.75 Aligned_cols=52 Identities=29% Similarity=0.239 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCC----CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEec
Q 038742 149 STLDRVWRCLTEE----PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVS 203 (243)
Q Consensus 149 ~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs 203 (243)
..++.+..++... ....+-|+|++|+||||||+.+++.. . .....+++++.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~~ 91 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEhH
Confidence 3445555665543 12688999999999999999999986 2 333345666543
No 30
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.43 E-value=0.00017 Score=58.59 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=35.7
Q ss_pred CcccccHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLT---E---------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.+.+++. . ...+-+-++|++|+||||||+.+.+..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 458999988777766542 2 123457899999999999999999976
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.43 E-value=0.00016 Score=60.09 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=38.4
Q ss_pred CcccccHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.+.+++.. ...+.+-|+|++|+||||||+.+.+..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999998887732 235688999999999999999999876
No 32
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.40 E-value=0.00011 Score=65.14 Aligned_cols=46 Identities=28% Similarity=0.274 Sum_probs=40.7
Q ss_pred CcccccHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTL---DRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..+ ..+...+.....+.+-++|++|+||||||+.+.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4589999888 778888888888889999999999999999999976
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.40 E-value=0.00015 Score=61.44 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=38.9
Q ss_pred CcccccHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-----EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.+..++.. .....+-|+|++|+|||+||+.+.+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999999998888863 345678999999999999999998865
No 34
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.39 E-value=0.00021 Score=61.10 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=40.0
Q ss_pred CcccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEP-VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|++..++.+.+.+..+. .+.+-|+|++|+||||+|+.+.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999997754 4578899999999999999998876
No 35
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.38 E-value=0.00017 Score=60.40 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=38.0
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.|.+++.. ...+.+.++|++|+||||||+.+.+..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4589999888888877642 245678999999999999999999976
No 36
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=0.00017 Score=64.93 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=39.8
Q ss_pred CcccccHHHHHHHHHHhcC-----------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-----------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|++..++.+.++|.. ...+.+-|+|++|+||||||+.+.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999975 134789999999999999999999875
No 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.00012 Score=62.19 Aligned_cols=45 Identities=18% Similarity=0.069 Sum_probs=38.4
Q ss_pred CcccccHHHHHHHHHHh-cCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 142 PAVVGFQSTLDRVWRCL-TEEPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
++++|.+...+.+.+++ ...+...+.|+|+.|+|||||++.+...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999998 6655444999999999999999999885
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.30 E-value=0.00028 Score=60.33 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=36.8
Q ss_pred CcccccHHHHHH---HHHHhcCCCc--eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDR---VWRCLTEEPV--GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++. +...+..... +.+-|+|++|+|||+||+.+.+..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999988665 5555555433 589999999999999999999987
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.29 E-value=0.00027 Score=60.61 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=38.4
Q ss_pred CcccccHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.|.+.+.. ...+.+-|+|++|+|||+||+.+.+..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999998887742 245678999999999999999999875
No 40
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.27 E-value=0.00026 Score=66.72 Aligned_cols=46 Identities=26% Similarity=0.363 Sum_probs=40.1
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|++..++.++..|......-+-++|.+|+||||+|+.+.+..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999987655557899999999999999999874
No 41
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.26 E-value=0.00026 Score=60.17 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=39.4
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.|...+..++++.+.++|++|+||||+|+.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999988888765558999999999999999998874
No 42
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.26 E-value=0.00026 Score=58.81 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=37.9
Q ss_pred CcccccHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE--------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.+..++.+...+.. ....-+-++|.+|+|||+||+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999988887754 234567799999999999999999876
No 43
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.24 E-value=0.00031 Score=59.23 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=38.1
Q ss_pred CcccccHHHHHHHHHHhc----------C--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLT----------E--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.|.+.+. . ...+-+-++|++|+|||+||+.+.+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 458999999999988772 1 134578899999999999999999976
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.23 E-value=0.00035 Score=59.03 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=37.3
Q ss_pred CcccccHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++.|.++.++.|.+.+.. ...+-|-++|++|+|||+||+.+.+..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4589999988888876631 134678899999999999999999864
No 45
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.22 E-value=0.00023 Score=68.00 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=40.4
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|++..+..+++.|......-+.++|.+|+||||||+.+.+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4479999999999999987655567899999999999999999875
No 46
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.22 E-value=0.00029 Score=57.24 Aligned_cols=46 Identities=26% Similarity=0.232 Sum_probs=34.8
Q ss_pred CcccccHHHHHHHHHHh---cC---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCL---TE---------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.+.+.+ .. ...+-+.|+|++|+||||||+.+.+..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 45899988777665543 22 123458899999999999999999976
No 47
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.21 E-value=9.2e-05 Score=54.95 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=33.6
Q ss_pred CcccccHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.++|.+..+.++.+.+.. ....-|-|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3478998888888887753 222346799999999999999999865
No 48
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.20 E-value=0.00043 Score=54.27 Aligned_cols=41 Identities=22% Similarity=0.455 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 147 FQSTLDRVWRCLTE---EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 147 ~~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++.++.|.+.+.. ....+|+|.|..|+|||||++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566777777764 356799999999999999999998865
No 49
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.20 E-value=0.0004 Score=65.36 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=40.6
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|++..++.+++.|......-+-++|.+|+||||+|+.+.+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999987666667899999999999999999875
No 50
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.16 E-value=0.00024 Score=60.37 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=36.1
Q ss_pred CcccccHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-----EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.+..++.+-..+.. .....+.++|++|+||||||+.+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3468888777776666543 245679999999999999999999976
No 51
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.13 E-value=0.00023 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 543
No 52
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.13 E-value=0.00052 Score=54.03 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 149 STLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 149 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+.|.+.+.. .+-.+|+|+|..|.|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345556666653 356799999999999999999998876
No 53
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.13 E-value=0.00064 Score=55.71 Aligned_cols=46 Identities=24% Similarity=0.300 Sum_probs=35.0
Q ss_pred CcccccHHHHHHHHH-------Hhc---CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWR-------CLT---EEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.+...+.++. .+. .....-+-|+|++|+|||+||+.+.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 346777766666555 332 3456788899999999999999999975
No 54
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.10 E-value=0.00056 Score=54.18 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 148 QSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 148 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++..+.+...+...+..+|.|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555555555678999999999999999999998875
No 55
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.07 E-value=0.00045 Score=51.67 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-..+.|+|..|+|||||++.+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 55689999999999999999999976
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.06 E-value=0.00041 Score=57.79 Aligned_cols=46 Identities=28% Similarity=0.446 Sum_probs=37.6
Q ss_pred CcccccHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEE---------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|.+..++.+...+... ....+.++|++|+||||||+.+.+..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 34789988888888777542 24689999999999999999999975
No 57
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.06 E-value=0.00029 Score=57.51 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=35.0
Q ss_pred CcccccHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.+.+.+.. ...+-+-++|++|+|||+||+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4588988877777765531 112347799999999999999999976
No 58
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.04 E-value=0.00037 Score=52.64 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|.|+.|+||||+++.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998774
No 59
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.04 E-value=0.00069 Score=56.90 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=39.9
Q ss_pred CcccccHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEP-VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+...+.+.+++...+ .+++-+.|++|+||||+|+.+.+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 568999999999999998764 4677888999999999999999875
No 60
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.04 E-value=0.0007 Score=58.62 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=38.3
Q ss_pred CcccccHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.|.+++.. ...+-+-|+|.+|+|||+||+.+.+..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999988732 234678999999999999999998875
No 61
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.03 E-value=0.00053 Score=54.13 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=34.2
Q ss_pred cccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 145 VGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 145 vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-+.++..+.+...+...+..+|+|+|.+|+|||||+..+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3455666667776666678999999999999999999988763
No 62
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.03 E-value=0.00061 Score=58.39 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=37.4
Q ss_pred CcccccHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.+..++.|.+.+.. ...+-|-++|++|+|||+||+.+.+..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4589999999988887731 123458899999999999999999976
No 63
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.01 E-value=0.00044 Score=56.45 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=33.8
Q ss_pred CcccccHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.+..+..+.+.+.. ....-+-|+|.+|+|||+||+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3478998888888776643 223456799999999999999999875
No 64
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.00 E-value=0.00041 Score=53.55 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+|+|+|+.|+|||||++.+...+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 4689999999999999999997753
No 65
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.98 E-value=0.00084 Score=59.29 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=37.9
Q ss_pred CcccccHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+..++.|.+.+.. ...+-|-++|++|+|||+||+.+.+..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999988887631 235678999999999999999999864
No 66
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.98 E-value=0.00068 Score=56.83 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=36.8
Q ss_pred CcccccHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.+..+..+.+.+.. ....-|-|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4578999888888887754 333456799999999999999999964
No 67
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.98 E-value=0.00055 Score=56.53 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=34.0
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.|.++.++.|.+.+.. .-.+-+.++|++|+||||||+.+....
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4578888888877765421 112239999999999999999999875
No 68
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.97 E-value=0.00081 Score=59.33 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=30.8
Q ss_pred cccHH--HHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 145 VGFQS--TLDRVWRCLTEEP-VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 145 vG~~~--~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|..+ ....+........ ...+.|+|++|+||||||+.+++..
T Consensus 109 ~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 109 VGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 36443 3344444444433 6789999999999999999999976
No 69
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.95 E-value=0.0005 Score=52.38 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998865
No 70
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.93 E-value=0.00056 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 71
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.93 E-value=0.00053 Score=53.58 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|.|+|+.|+||||+++.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998865
No 72
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.92 E-value=0.00042 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|+|+|+.|+|||||++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998875
No 73
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.00079 Score=59.22 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=37.4
Q ss_pred CcccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLT----E---------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++.|.++.+++|.+.+. . ...+-|-++|++|+|||+||+++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 347899998888877643 2 146788999999999999999999986
No 74
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00057 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 75
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.89 E-value=0.0044 Score=51.69 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+++|.+|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998776
No 76
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.00084 Score=59.09 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=37.1
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++.|.++.+++|.+.+.- ...+-|-++|++|+|||+||+++.+..
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3467898888887776532 146789999999999999999999986
No 77
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.88 E-value=0.00068 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|.|+.|+||||+++.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999976
No 78
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00084 Score=58.94 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=37.4
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++.|.++.+++|.+.+.- ...+-|-++|++|+|||+||+++.+..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999888888776532 145678999999999999999999986
No 79
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.83 E-value=0.00073 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+.|.++|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998875
No 80
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.83 E-value=0.0035 Score=49.15 Aligned_cols=45 Identities=22% Similarity=0.153 Sum_probs=33.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQ 212 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~ 212 (243)
.-.++.|+|.+|+|||||+..+.. . . =..++|+.....++...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHH
Confidence 456899999999999999999987 3 1 1357777766655555544
No 81
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.82 E-value=0.0007 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998753
No 82
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.82 E-value=0.0014 Score=56.19 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=36.6
Q ss_pred cccccHHHHHHHHHHhc-------------C--CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLT-------------E--EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++|.+..++.+...+. . .....+-++|++|+|||++|+.+.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36899988888888772 1 134578899999999999999999976
No 83
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.81 E-value=0.00078 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|.|++|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 84
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.81 E-value=0.00086 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+|+|+|+.|+|||||++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998754
No 85
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.80 E-value=0.00087 Score=52.35 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=24.8
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 160 EEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 160 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...-.+|+|+|+.|.|||||++.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999998876
No 86
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.80 E-value=0.0018 Score=54.36 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 150 TLDRVWRCLTEE--PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 150 ~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....+..++... ....+-|+|++|+||||||+.+++..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 344455555443 35678999999999999999999976
No 87
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.79 E-value=0.00081 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 88
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.79 E-value=0.0017 Score=55.50 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=32.3
Q ss_pred cccHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 145 VGFQSTLDRVWRCLT----EEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 145 vG~~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+.-.+.+++.+. .+....|.|+|++|+||||+++.+....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 444555666666653 3456779999999999999999888764
No 89
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.79 E-value=0.00085 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+++|+|+.|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999763
No 90
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.78 E-value=0.00082 Score=52.51 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-.+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 346799999999999999999998764
No 91
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.00088 Score=58.28 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=36.9
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++.|.++.+++|.+.+.- ...+-|-++|++|+|||.||+++.+..
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 3477899888888776532 145678899999999999999999986
No 92
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.78 E-value=0.017 Score=50.75 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.++|.+|+||||++..+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999876
No 93
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.78 E-value=0.0008 Score=51.89 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 94
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.78 E-value=0.00099 Score=51.28 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|++|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
No 95
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.78 E-value=0.0014 Score=54.58 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|+|..|+||||||+.+....
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999999998876
No 96
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.77 E-value=0.00088 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|.|.|+.|+||||+++.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 97
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.77 E-value=0.00066 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|+.|+||||||+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 98
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.76 E-value=0.00088 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|+|+|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
No 99
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.75 E-value=0.0009 Score=56.41 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=37.0
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.+..++.+...+...+ -+-++|.+|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence 457899999988888877643 57789999999999999998865
No 100
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.74 E-value=0.0018 Score=55.68 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=36.1
Q ss_pred CcccccHHHHHHHHHHhcC------------------------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE------------------------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~------------------------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|.+..++.|...+.. .....+-++|++|+||||||+.+.+..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578998888888776620 123468899999999999999999875
No 101
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.73 E-value=0.00089 Score=52.18 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+|+|+|+.|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998754
No 102
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.73 E-value=0.00088 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999977
No 103
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.73 E-value=0.0016 Score=52.76 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=33.0
Q ss_pred CcccccHHHHHHHHHHhc---CC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLT---EE---------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+....++.++.. .. -.+-+.|+|++|+|||||++.+....
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 457888876665554432 10 11238999999999999999999876
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.73 E-value=0.001 Score=52.15 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998865
No 105
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.73 E-value=0.0008 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.441 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 038742 163 VGIVGLHGMGGVGKTTLLTQIN 184 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~ 184 (243)
-.+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999644
No 106
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.71 E-value=0.0011 Score=50.93 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 107
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.71 E-value=0.001 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|+|+.|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999654
No 108
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.71 E-value=0.00089 Score=51.20 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|+.|+||||+++.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998765
No 109
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.69 E-value=0.0011 Score=54.00 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|+|+.|+||||||+.+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998764
No 110
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0013 Score=58.06 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=37.0
Q ss_pred cccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLT----E---------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++.|.++.+++|.+.+. . ...+-|-++|++|+|||+||+++.+..
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 47789988888877642 1 256788899999999999999999976
No 111
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.69 E-value=0.014 Score=51.31 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|.++|.+|+||||++..+....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36899999999999999999998876
No 112
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.69 E-value=0.0008 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 113
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.68 E-value=0.0011 Score=51.09 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 114
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.68 E-value=0.0013 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
+..+|+|+|+.|+||||+++.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 115
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.67 E-value=0.0009 Score=50.98 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.|.|++|+||||+|+.+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998876
No 116
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.66 E-value=0.00087 Score=56.67 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=34.2
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.+.....+...+......-+-|+|.+|+|||+||+.+.+..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3478998866655444443333348899999999999999999875
No 117
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.66 E-value=0.0013 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..|.+.|+.|+||||+++.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 118
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.65 E-value=0.0011 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998865
No 119
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.64 E-value=0.0011 Score=51.84 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|+|+|+.|+|||||++.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998753
No 120
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.64 E-value=0.0012 Score=51.69 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 121
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.64 E-value=0.0017 Score=52.77 Aligned_cols=41 Identities=34% Similarity=0.425 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHhcCC-----CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 147 FQSTLDRVWRCLTEE-----PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 147 ~~~~~~~l~~~L~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++...+.++..+..+ ...+|.++|++|+||||+|+.+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344445555444432 46789999999999999999998865
No 122
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.64 E-value=0.0011 Score=55.80 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++.+||+|.|-|||||||.+-.+.--.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 468999999999999999998887765
No 123
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.63 E-value=0.0017 Score=58.01 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=37.2
Q ss_pred cccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++|.+..++.|.+++.. ....-+-|+|.+|+|||+||+.+.+..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 478999999888887742 234568899999999999999998865
No 124
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.63 E-value=0.0013 Score=51.26 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999976
No 125
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.63 E-value=0.0013 Score=53.33 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999998864
No 126
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.63 E-value=0.00095 Score=52.29 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|+|+.|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 127
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.63 E-value=0.0014 Score=50.41 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 128
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.63 E-value=0.0012 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
...|.|+|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999886
No 129
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.63 E-value=0.0014 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|.|.|+.|+||||+++.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998764
No 130
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.62 E-value=0.0016 Score=58.36 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=37.0
Q ss_pred CcccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.+..++.+...+..+. -+-++|++|+|||+||+.+.+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence 357899998888888776653 57799999999999999999865
No 131
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.61 E-value=0.0013 Score=50.92 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 132
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.61 E-value=0.0023 Score=53.09 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998764
No 133
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.61 E-value=0.0021 Score=52.79 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=33.5
Q ss_pred CcccccHHHHHHHHHHhc---CC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLT---EE---------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.++..+++.++.. .. -.+-+.|+|+.|+|||||++.+....
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 457898877666655442 10 11238999999999999999999876
No 134
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.60 E-value=0.0016 Score=54.23 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....+-++|++|+|||+||+.+.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999986
No 135
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.59 E-value=0.0015 Score=50.20 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 136
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.59 E-value=0.001 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998875
No 137
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.59 E-value=0.0023 Score=56.66 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=35.8
Q ss_pred CcccccHHHHHHHHHH---hcCC--CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRC---LTEE--PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~---L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|.++.++.+..+ +... ..+-+-++|++|+|||+||+.+.+..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 5689999887765444 3333 33568899999999999999999987
No 138
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.59 E-value=0.001 Score=52.03 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 139
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0018 Score=56.67 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=36.4
Q ss_pred cccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLT----E---------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++.|.++.+++|.+.+. . ...+-|-++|++|.|||.||+++.+..
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 46789988888777553 2 146789999999999999999999986
No 140
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.55 E-value=0.0016 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 141
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.54 E-value=0.0012 Score=49.90 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 142
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.54 E-value=0.02 Score=50.30 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|.++|.+|+||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999998876
No 143
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.53 E-value=0.0077 Score=51.55 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=44.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhcC----------CCHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIAF----------SSFHEKAQEI 231 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~----------~~~~~~~~~l 231 (243)
.-+++.|.|.+|+|||||+.++.... .... ..++|+.....++.. .+++++. .+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~-~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA-QKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH-HHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 45799999999999999999999875 2221 246788777666654 3444443 3455555555
Q ss_pred HHHhh
Q 038742 232 FKTMR 236 (243)
Q Consensus 232 ~~~L~ 236 (243)
...++
T Consensus 132 ~~l~~ 136 (356)
T 3hr8_A 132 DELVR 136 (356)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55544
No 144
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.53 E-value=0.0017 Score=48.88 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999875
No 145
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.52 E-value=0.0016 Score=50.68 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
No 146
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.52 E-value=0.005 Score=49.01 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCC----CCCEEEEEEecCcccHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSN----NFDFVIWEVVSRDLQLEKM 211 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i 211 (243)
.-.++.|+|.+|+|||||+..+.... .... .-..++|+.....++...+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 45689999999999999999998853 1111 1256788877665454433
No 147
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.52 E-value=0.0018 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999863
No 148
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.51 E-value=0.0012 Score=50.48 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=18.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998765
No 149
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.51 E-value=0.0015 Score=51.31 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999997653
No 150
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.51 E-value=0.0015 Score=52.68 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+|+|.|..|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998754
No 151
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.50 E-value=0.0026 Score=56.59 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=34.8
Q ss_pred CcccccHHHHHHHHHHhc---CC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLT---EE---------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.++.++++.+.+. .. ..+-|.++|++|+||||||+.+.+..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 458899887766666542 21 13357899999999999999999976
No 152
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.49 E-value=0.0015 Score=54.97 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|+|+|..|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 46799999999999999999998875
No 153
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.49 E-value=0.0067 Score=47.82 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccC---C-CCCEEEEEEecCccc
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTS---N-NFDFVIWEVVSRDLQ 207 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~---~-~F~~~~wv~vs~~~~ 207 (243)
.-.+++|+|+.|+|||||++.+.... ... . .-...+|+.-...+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~-~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCEEEEEECCCCCC
Confidence 45699999999999999999998743 111 1 124567776544333
No 154
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.49 E-value=0.0081 Score=46.93 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=43.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhcC----------CCHHHHHHHHHHH
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIAF----------SSFHEKAQEIFKT 234 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~----------~~~~~~~~~l~~~ 234 (243)
.|+|=|.-|+||||.++.+.+.. +..+ .+ ++...-+......+..++++..-.. .+..+....+...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L-~~~g-~~-v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL-EKRG-KK-VILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HHTT-CC-EEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHCC-Cc-EEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999987 4332 23 3333333333344555555443222 2233445566666
Q ss_pred hhcCceE
Q 038742 235 MRNTKFV 241 (243)
Q Consensus 235 L~~kr~L 241 (243)
|...+.+
T Consensus 79 L~~g~~V 85 (197)
T 3hjn_A 79 LSEGYAV 85 (197)
T ss_dssp HTTTCEE
T ss_pred HHCCCeE
Confidence 7655443
No 155
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.48 E-value=0.0011 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.|.|+|+.|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999998764
No 156
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.48 E-value=0.0045 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.536 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|+|.|..|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 157
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.46 E-value=0.0078 Score=50.70 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCC----CCCEEEEEEecCcccHHHHHHHHHHHhc
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSN----NFDFVIWEVVSRDLQLEKMQESIAKKIA 220 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~I~~~l~ 220 (243)
.-.++.|+|.+|+||||||..+.... .... .=..++|++....+++..+.. +++.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 45689999999999999999998764 1110 024688999888777776653 344443
No 158
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.46 E-value=0.0018 Score=52.67 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
.-.+|+|+|+.|+|||||++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999984
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.45 E-value=0.0093 Score=50.92 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLE 209 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 209 (243)
.-+++.|.|.+|+||||||.++.... .... ..++|++....++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~~~g--~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-QAAG--GIAAFIDAEHALDPE 104 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHTT--CCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhCC--CeEEEEECCCCcCHH
Confidence 45689999999999999999998765 2121 357888887777653
No 160
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.45 E-value=0.0021 Score=50.19 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|.|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998864
No 161
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.44 E-value=0.01 Score=46.78 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|.|.|++|+||||.|+.+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999986
No 162
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.44 E-value=0.0019 Score=50.51 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCE
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDF 196 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~ 196 (243)
..+|.|.|+.|+||||+++.+.... .. .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l-~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL-KN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH-HH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH-HH-cCCcE
Confidence 4689999999999999999999875 32 24554
No 163
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.43 E-value=0.036 Score=49.61 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|+|.+|+||||++..+....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999998765
No 164
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.43 E-value=0.0021 Score=50.32 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|+.|+||||+++.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 165
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.42 E-value=0.0023 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.+||-|.|++|+||||.|+.+.++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999987
No 166
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.42 E-value=0.0021 Score=49.09 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999999875
No 167
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.41 E-value=0.00095 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.731 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|+|.|..|+||||+++.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998875
No 168
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.41 E-value=0.0022 Score=48.46 Aligned_cols=27 Identities=37% Similarity=0.365 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-.+++++|+.|.|||||++.+..-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345699999999999999999998764
No 169
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.40 E-value=0.0016 Score=51.81 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 170
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.38 E-value=0.0022 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 171
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.37 E-value=0.0022 Score=50.27 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 172
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.36 E-value=0.0024 Score=50.48 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998876
No 173
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.36 E-value=0.0043 Score=53.02 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=28.6
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 151 LDRVWRCLT--EEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 151 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...++..+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3467899999999999999999987654
No 174
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.35 E-value=0.002 Score=51.62 Aligned_cols=24 Identities=38% Similarity=0.300 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
+-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 456899999999999999998883
No 175
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.34 E-value=0.0022 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998865
No 176
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.33 E-value=0.0019 Score=50.29 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++|+|+.|+|||||++.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998865
No 177
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.32 E-value=0.011 Score=50.72 Aligned_cols=45 Identities=22% Similarity=0.140 Sum_probs=34.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLE 209 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 209 (243)
.-+++-|.|.+|+||||||.++.... .... ..++|+.....++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~-~~~g--~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA-QREG--KTCAFIDAEHALDPI 106 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HHTT--CCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHCC--CeEEEEeCCCCccHH
Confidence 45689999999999999999988765 2222 357888887777644
No 178
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.32 E-value=0.0023 Score=49.68 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998864
No 179
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.32 E-value=0.0026 Score=48.51 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+|.|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998864
No 180
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.31 E-value=0.0028 Score=49.83 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998865
No 181
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.30 E-value=0.0025 Score=50.14 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 182
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.29 E-value=0.0042 Score=52.41 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|+|.|..|+|||||++.+..-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46699999999999999999998765
No 183
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.28 E-value=0.016 Score=48.57 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKK 218 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~ 218 (243)
.-.++-|.|.+|+||||||..+..+. -... ..++|++.. .+...+...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 44689999999999999999998765 3222 567777754 4555555555543
No 184
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.27 E-value=0.0023 Score=53.59 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|+|+.|+|||||++.+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999998765
No 185
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.27 E-value=0.0025 Score=50.76 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|+.|+|||||++.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998865
No 186
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.26 E-value=0.002 Score=61.07 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=36.3
Q ss_pred cccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++|.+..++.|.+++.. .....|.++|.+|+||||||+.+.+..
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 478888888888777642 235579999999999999999998865
No 187
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.25 E-value=0.0024 Score=51.43 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999998643
No 188
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.25 E-value=0.0047 Score=52.32 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+..+++|+|+.|+|||||++.+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998876
No 189
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.24 E-value=0.0033 Score=55.37 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=36.4
Q ss_pred CcccccHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE--------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|.++.++.+...+.. ...+-|-++|++|+||||+|+.+....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4588999888888766622 124568899999999999999999876
No 190
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.24 E-value=0.013 Score=50.33 Aligned_cols=45 Identities=20% Similarity=0.104 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLE 209 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~ 209 (243)
.-.++-|.|.+|+||||||.++.... .... ..++|++....++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~-~~~g--~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA-QKAG--GTCAFIDAEHALDPV 117 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHTT--CCEEEEESSCCCCHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH-HHCC--CeEEEEECCCChhHH
Confidence 34588889999999999999888765 2222 357899988777654
No 191
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.24 E-value=0.0022 Score=50.66 Aligned_cols=24 Identities=33% Similarity=0.153 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
-.+++|+|+.|.|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 192
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.23 E-value=0.0023 Score=51.16 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998643
No 193
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.23 E-value=0.003 Score=49.80 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999965
No 194
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.21 E-value=0.0025 Score=50.42 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|.|.|+.|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999876
No 195
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.21 E-value=0.0027 Score=51.32 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
. .+++|+|+.|.|||||.+.+..-.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 6 899999999999999999998653
No 196
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.19 E-value=0.031 Score=46.54 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+++|.+|+||||++..+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998776
No 197
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0031 Score=52.80 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|+.|+|||||++.+....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998876
No 198
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.18 E-value=0.0076 Score=48.23 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-..|.|.|+.|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999987
No 199
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.18 E-value=0.0034 Score=48.84 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|.|+.|+||||+++.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998865
No 200
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.17 E-value=0.0018 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 038742 163 VGIVGLHGMGGVGKTTLLTQIN 184 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~ 184 (243)
-.+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 201
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.17 E-value=0.0059 Score=54.69 Aligned_cols=46 Identities=24% Similarity=0.215 Sum_probs=34.4
Q ss_pred CcccccHHHHHHHHHHh---cCC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCL---TEE---------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.++.+.++.++. ... -.+-+.|+|++|+||||||+.+.+..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56899987766665544 221 12348999999999999999999876
No 202
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.17 E-value=0.003 Score=52.21 Aligned_cols=24 Identities=29% Similarity=0.678 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999973
No 203
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.17 E-value=0.0044 Score=51.96 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 149 STLDRVWRCLTEE---PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 149 ~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+.+.+++..- ....+-++|.+|+|||+||+.+++..
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3444555566542 24678899999999999999999976
No 204
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.16 E-value=0.0039 Score=50.34 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|.|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 205
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.15 E-value=0.003 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|+|..|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998865
No 206
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.15 E-value=0.0054 Score=54.72 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+|+|+|..|+|||||++.+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998865
No 207
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.14 E-value=0.0033 Score=48.49 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 5689999999999999999998764
No 208
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.13 E-value=0.0018 Score=49.58 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 209
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.12 E-value=0.003 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 210
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.11 E-value=0.014 Score=49.03 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=40.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCC---------CC-----CEEEEEEecCcccHHHHHHHHHHHhc
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSN---------NF-----DFVIWEVVSRDLQLEKMQESIAKKIA 220 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~---------~F-----~~~~wv~vs~~~~~~~i~~~I~~~l~ 220 (243)
.-.++-|.|.+|+||||||..+.... .... .. ..++|++....+++..+.. ++..++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 45789999999999999999988753 1110 11 4678999888877776654 344443
No 211
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.11 E-value=0.0033 Score=51.11 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.-.+++|+|+.|.|||||++.+..-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999884
No 212
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.11 E-value=0.0029 Score=51.51 Aligned_cols=25 Identities=36% Similarity=0.316 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998865
No 213
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.11 E-value=0.0029 Score=51.08 Aligned_cols=26 Identities=42% Similarity=0.473 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998753
No 214
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.10 E-value=0.0031 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998653
No 215
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.09 E-value=0.003 Score=51.58 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999997653
No 216
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.09 E-value=0.0039 Score=47.83 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+++|+|..|+|||||++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998875
No 217
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.08 E-value=0.0032 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+-.+++|+|+.|.|||||++.+..-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999764
No 218
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.08 E-value=0.0038 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 219
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.08 E-value=0.0096 Score=49.23 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKK 218 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~ 218 (243)
.-.+++|+|.+|+|||||++.+.... ..... ..++|+... .+...+.+.++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~~G-~~v~~~~~e--~~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW-GTAMG-KKVGLAMLE--ESVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH-HHTSC-CCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHHcC-CeEEEEeCc--CCHHHHHHHHHHH
Confidence 45689999999999999999998876 32211 135555543 3444555544443
No 220
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.08 E-value=0.0039 Score=49.06 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 221
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.06 E-value=0.0039 Score=50.44 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...++.+.|.||+|||||+..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 36788899999999999999998765
No 222
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.06 E-value=0.004 Score=49.45 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.|.|++|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 223
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.05 E-value=0.0032 Score=50.44 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998754
No 224
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.05 E-value=0.0036 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.-.+++|+|+.|.|||||++.+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999884
No 225
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.05 E-value=0.0043 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.-|.++|.+|+|||||++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 226
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.04 E-value=0.0042 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 227
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.04 E-value=0.0035 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998653
No 228
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.04 E-value=0.0054 Score=56.22 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=36.7
Q ss_pred cccccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++|.+..++.+...+... ..+.|+|+.|+||||||+.+....
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 4789988888877777665 478999999999999999999865
No 229
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.04 E-value=0.0042 Score=50.00 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+|.|+.|+||||+++.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 230
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.03 E-value=0.0032 Score=51.59 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45689999999999999999998753
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.03 E-value=0.0045 Score=56.07 Aligned_cols=46 Identities=30% Similarity=0.386 Sum_probs=35.8
Q ss_pred CcccccHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|.++..+.+.+.+.- .+..++.++|++|+||||||+.+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478888877776554421 246689999999999999999999876
No 232
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.03 E-value=0.0027 Score=50.42 Aligned_cols=26 Identities=42% Similarity=0.694 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998754
No 233
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.02 E-value=0.004 Score=51.87 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...++|+|+|-||+||||+|..+....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH
Confidence 468899999999999999999988876
No 234
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.02 E-value=0.0035 Score=51.46 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999998643
No 235
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.02 E-value=0.043 Score=48.06 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+++|.+|+||||++..+....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999876
No 236
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.01 E-value=0.015 Score=49.32 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCC----CCCEEEEEEecCcccHHHHHHHHHHHh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSN----NFDFVIWEVVSRDLQLEKMQESIAKKI 219 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~----~F~~~~wv~vs~~~~~~~i~~~I~~~l 219 (243)
.-.++.|+|.+|+||||||..+.... .... .=..++|++....+++..+.. ++..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 45689999999999999999998863 1111 124688999888777766543 33443
No 237
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.01 E-value=0.0035 Score=50.89 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997753
No 238
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.01 E-value=0.0034 Score=51.24 Aligned_cols=26 Identities=42% Similarity=0.500 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998753
No 239
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.00 E-value=0.0043 Score=48.01 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999876
No 240
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.96 E-value=0.0037 Score=51.13 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998754
No 241
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.96 E-value=0.0037 Score=51.47 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 242
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.019 Score=48.00 Aligned_cols=73 Identities=8% Similarity=0.044 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccC-CCCCEEEEEEecC-cccHHHHHHHHHHHhc
Q 038742 146 GFQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTS-NNFDFVIWEVVSR-DLQLEKMQESIAKKIA 220 (243)
Q Consensus 146 G~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~-~~F~~~~wv~vs~-~~~~~~i~~~I~~~l~ 220 (243)
|-++.++.|.+.+..++.+..-++|++|+||||+|..+.+...... .|.+. .++..+. ...+.. .+++.+.+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHh
Confidence 3456677788888777778899999999999999999987531112 24444 4555443 344433 344555543
No 243
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.96 E-value=0.0049 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|+|.|+.|+||||||..+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998875
No 244
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.96 E-value=0.0042 Score=48.97 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.++.|+|.+|+|||||++.+....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998654
No 245
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.95 E-value=0.0046 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+++|+|..|+|||||++.+....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 5799999999999999999998876
No 246
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.95 E-value=0.0048 Score=49.27 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|.|.|+.|+||||+|+.+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 247
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.95 E-value=0.0038 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998753
No 248
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.94 E-value=0.019 Score=49.98 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccC----CCCCEEEEEEecCcccHHHHHHHHHHHhc
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTS----NNFDFVIWEVVSRDLQLEKMQESIAKKIA 220 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~----~~F~~~~wv~vs~~~~~~~i~~~I~~~l~ 220 (243)
.-.++.|+|.+|+|||||+..+.-.. ... ..-..++|+.-...++...+. .+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~-~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC-QIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh-ccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 45699999999999999999775332 111 123457888877666655543 3555554
No 249
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.94 E-value=0.0038 Score=50.72 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 250
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.94 E-value=0.005 Score=51.62 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|+|+|.+|+||||++..+....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 35799999999999999999998876
No 251
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.93 E-value=0.0034 Score=47.95 Aligned_cols=21 Identities=43% Similarity=0.521 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 038742 165 IVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~ 185 (243)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999876
No 252
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.93 E-value=0.0043 Score=45.73 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.++|.+|+|||||++.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
No 253
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.92 E-value=0.0084 Score=45.66 Aligned_cols=35 Identities=34% Similarity=0.562 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 151 LDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 151 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
...+.+ +...+...|.|+|.+|+|||||.+.+.+.
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 45556778999999999999999999854
No 254
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.92 E-value=0.0039 Score=50.76 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 255
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.90 E-value=0.0056 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
...|+++|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 256
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.90 E-value=0.006 Score=46.11 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=27.6
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 151 LDRVWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 151 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
...+.+.+.. .+...|.|+|.+|+|||||.+.+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3445555555 56678999999999999999998753
No 257
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.90 E-value=0.0069 Score=47.77 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCC-CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 150 TLDRVWRCLTEE-PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 150 ~~~~l~~~L~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-+..+..++..- +-+-+-|+|++|+||||+|..+.+..
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 355555555542 23469999999999999999998875
No 258
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.89 E-value=0.0041 Score=51.45 Aligned_cols=26 Identities=38% Similarity=0.350 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 259
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.88 E-value=0.0046 Score=45.87 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||++.+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 260
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.88 E-value=0.0055 Score=50.13 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-.+++|+|+.|+|||||++.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 445799999999999999999987754
No 261
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.87 E-value=0.0049 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++|+|..|+|||||.+.+..-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999764
No 262
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.86 E-value=0.025 Score=44.73 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=33.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHH
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
-..|.|-|..|+||||+++.+.+.. .. ..+.... ..-+......+.+++++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l-~~-~~~~v~~-~~~p~~~~~g~~i~~~l~ 57 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL-RE-RGIEVQL-TREPGGTPLAERIRELLL 57 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH-HT-TTCCEEE-EESSCSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH-HH-cCCCccc-ccCCCCCHHHHHHHHHHh
Confidence 3579999999999999999999987 32 3355432 222222223344555554
No 263
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.86 E-value=0.02 Score=50.55 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 147 FQSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 147 ~~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....+..+...+...+ ..+.|.|.+|+||||++..+....
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3455566666665543 389999999999999999999886
No 264
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.84 E-value=0.035 Score=46.75 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHHhcC
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKKIAF 221 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~l~~ 221 (243)
.++-|.|.+|+|||||+.++.... .....=..++|+...+++++. -+++++.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~-~~~g~g~~vlyId~E~s~~~~-----ra~~lGv 80 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSY-MRQYPDAVCLFYDSEFGITPA-----YLRSMGV 80 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH-HHHCTTCEEEEEESSCCCCHH-----HHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEeccchhhHH-----HHHHhCC
Confidence 378999999999999998887765 211112467899888887764 2666665
No 265
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.83 E-value=0.013 Score=50.05 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=32.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCC----CEEEEEEecCcccHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNF----DFVIWEVVSRDLQLE 209 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F----~~~~wv~vs~~~~~~ 209 (243)
.-.++.|+|..|+|||||+..+.... ...... ..++|+.-...+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHH
Confidence 56799999999999999999998764 111011 245788765554433
No 266
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.82 E-value=0.0057 Score=50.66 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 267
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.78 E-value=0.0051 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.++.|+|.+|+|||||+..+....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 268
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.78 E-value=0.0053 Score=46.83 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.|.++|.+|+|||||++.+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 269
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.78 E-value=0.0055 Score=45.29 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-|.|+|.+|+|||||.+.+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998754
No 270
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.77 E-value=0.0063 Score=47.34 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 148 QSTLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 148 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+...+.+.++....+.--|.|+|.+|+|||||.+.+.+..
T Consensus 15 ~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 15 VPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ---------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3334444444444556678999999999999999888653
No 271
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.77 E-value=0.0064 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|+|+.|+||||||+.+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998875
No 272
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.77 E-value=0.0055 Score=51.33 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+-.+++|+|+.|.|||||++.+..-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 35678999999999999999999865
No 273
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.76 E-value=0.0066 Score=51.21 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|+|.+|+||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999998765
No 274
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.75 E-value=0.0043 Score=58.59 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=35.0
Q ss_pred cccccHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLT----E---------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++.|.++.+++|.+++. . ...+-|-++|++|+|||+||+.+.+..
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36688877777766542 2 145678999999999999999999976
No 275
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.74 E-value=0.0049 Score=46.14 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999997654
No 276
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.72 E-value=0.0094 Score=45.32 Aligned_cols=26 Identities=35% Similarity=0.449 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.....|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999865
No 277
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.72 E-value=0.0064 Score=45.04 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.|+|.+|+|||||.+.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 278
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0058 Score=46.74 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....|.|+|.+|+|||||.+.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998764
No 279
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.71 E-value=0.0062 Score=46.48 Aligned_cols=25 Identities=32% Similarity=0.141 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||++.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999998887653
No 280
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.71 E-value=0.0045 Score=49.44 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+-.+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999998774
No 281
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.70 E-value=0.0055 Score=50.21 Aligned_cols=23 Identities=43% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+++|+|+.|.|||||.+.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999753
No 282
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.69 E-value=0.013 Score=55.05 Aligned_cols=46 Identities=28% Similarity=0.442 Sum_probs=37.6
Q ss_pred CcccccHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEE---------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|.+..++.+...+... ....+-++|++|+|||+||+.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999888888877531 23478999999999999999999875
No 283
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.68 E-value=0.0061 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 284
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.67 E-value=0.0064 Score=44.88 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
--|.|+|.+|+|||||.+.+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999988653
No 285
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.66 E-value=0.013 Score=51.35 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=26.5
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 154 VWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 154 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++ ....-.+++|+|+.|.|||||++.+....
T Consensus 159 L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 159 FRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 4444 34556799999999999999999998865
No 286
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.0063 Score=45.23 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
--|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999874
No 287
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.66 E-value=0.0078 Score=50.78 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
-+++-|+|++|+||||||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456789999999999999999875
No 288
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.66 E-value=0.0065 Score=45.14 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
--|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 289
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.65 E-value=0.0073 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+|+|.+|+||||++..+....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998876
No 290
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.65 E-value=0.0066 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.++|.+|+|||||.+.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998764
No 291
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.65 E-value=0.0073 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|.++|.+|+|||||.+.+.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997653
No 292
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.65 E-value=0.0079 Score=48.09 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999988753
No 293
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.65 E-value=0.0064 Score=45.23 Aligned_cols=25 Identities=36% Similarity=0.299 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998653
No 294
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.64 E-value=0.018 Score=46.08 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-..|.|-|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999987
No 295
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.64 E-value=0.0084 Score=48.05 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999875
No 296
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.62 E-value=0.004 Score=51.74 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998864
No 297
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.60 E-value=0.0067 Score=46.14 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||++.+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468899999999999999998763
No 298
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.59 E-value=0.0066 Score=45.02 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
-|.++|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5889999999999999998654
No 299
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.59 E-value=0.0082 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
..+|+|+|.+|+|||||.+.+...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999999864
No 300
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.59 E-value=0.007 Score=45.48 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...-|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 35678999999999999999987753
No 301
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.58 E-value=0.0072 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|.|-||+||||+|..+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH
Confidence 588999999999999999998876
No 302
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.58 E-value=0.007 Score=45.46 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..-|.|+|..|+|||||.+.+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999998763
No 303
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.56 E-value=0.0065 Score=50.52 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 304
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.56 E-value=0.0074 Score=52.09 Aligned_cols=27 Identities=22% Similarity=0.073 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-.+++|+|+.|.|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356799999999999999999999864
No 305
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.56 E-value=0.03 Score=43.95 Aligned_cols=50 Identities=16% Similarity=0.358 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHH
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
..|+|=|..|+||||+++.+.+.. ...++.+. ..-+......+.+++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L---~~~~~v~~-~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL---VKDYDVIM-TREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---TTTSCEEE-EESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH---HCCCCEEE-eeCCCCChHHHHHHHHHh
Confidence 468899999999999999999987 33455432 222222234444555543
No 306
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.55 E-value=0.0056 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+|+|.+|+||||++..+....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998865
No 307
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.55 E-value=0.0085 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346889999999999999998765
No 308
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.55 E-value=0.0074 Score=45.26 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998653
No 309
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.54 E-value=0.0086 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|+|+.|+||||||..+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998754
No 310
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.54 E-value=0.0087 Score=44.91 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+...|.|+|.+|+|||||.+.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 311
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.53 E-value=0.012 Score=45.49 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=24.5
Q ss_pred HHHHh-cCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 154 VWRCL-TEEPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 154 l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+++.+ ...+...|+++|.+|+|||||.+.+.+.
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34444 2334456899999999999999999753
No 312
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.53 E-value=0.0082 Score=50.93 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|+|+.|+|||||+..+....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998875
No 313
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.52 E-value=0.007 Score=50.92 Aligned_cols=25 Identities=48% Similarity=0.705 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
++.+++|+|+-|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999864
No 314
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.52 E-value=0.0075 Score=44.77 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
--|.|+|.+|+|||||.+.+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458999999999999999998653
No 315
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.52 E-value=0.0077 Score=45.64 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
--|.|+|.+|+|||||.+.+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998764
No 316
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.51 E-value=0.0084 Score=44.43 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
--|.|+|.+|+|||||.+.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 317
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.50 E-value=0.008 Score=45.05 Aligned_cols=25 Identities=32% Similarity=0.285 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-|.|+|.+|+|||||.+.+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998764
No 318
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.50 E-value=0.0083 Score=52.42 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999999998754
No 319
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.49 E-value=0.008 Score=45.96 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+...|.|+|.+|+|||||.+.+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667999999999999999999765
No 320
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.49 E-value=0.0098 Score=44.20 Aligned_cols=22 Identities=41% Similarity=0.409 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
--|.|+|.+|+|||||.+.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999853
No 321
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.49 E-value=0.0079 Score=45.98 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.--|.|+|.+|+|||||++.+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999877665
No 322
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.48 E-value=0.0081 Score=45.42 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999998763
No 323
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.48 E-value=0.019 Score=53.92 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=37.3
Q ss_pred CcccccHHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE---------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..++|.+..++.+...+.. .....+-++|++|+|||+||+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999988888777652 124478999999999999999999875
No 324
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.47 E-value=0.0053 Score=51.47 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45689999999999999999997643
No 325
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.46 E-value=0.0085 Score=44.59 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999997653
No 326
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.46 E-value=0.011 Score=51.56 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 466999999999999999999988
No 327
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.45 E-value=0.0094 Score=46.59 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....|.|+|.+|+|||||++.+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998764
No 328
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.43 E-value=0.0084 Score=46.05 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+...|+++|.+|+|||||.+.+.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999874
No 329
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.43 E-value=0.0093 Score=49.16 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++|+|.|-||+||||+|..+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 330
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.43 E-value=0.0085 Score=45.83 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||++.+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4578999999999999999887653
No 331
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.42 E-value=0.0093 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
.+.+|+|..|.|||||+..|+-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999975
No 332
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.41 E-value=0.0092 Score=45.30 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+..-|.|+|.+|+|||||.+.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 333
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.41 E-value=0.0087 Score=45.33 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998764
No 334
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.40 E-value=0.0098 Score=47.36 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecC
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSR 204 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~ 204 (243)
.-.++.|.|.+|+|||||+..+.... ...+ ..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~-~~~~--~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG-LKMG--EPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH-HHTT--CCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhcC--CeEEEEEccC
Confidence 34689999999999999988776653 1111 2456665443
No 335
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.39 E-value=0.0048 Score=47.95 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
..-..|+|+|..|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999988754
No 336
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.38 E-value=0.011 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|.|+|+.|+||||||..+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5689999999999999999998865
No 337
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.38 E-value=0.0092 Score=45.43 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|.|+|..|+|||||.+.+.+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4578999999999999999998763
No 338
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.38 E-value=0.0075 Score=45.80 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-|.|+|.+|+|||||.+.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999988753
No 339
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.38 E-value=0.0092 Score=45.31 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||++.+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 340
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.38 E-value=0.0092 Score=45.05 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
--|.++|.+|+|||||.+.+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987653
No 341
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.37 E-value=0.0087 Score=44.93 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
..--|.|+|.+|+|||||.+.+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3557899999999999999999765
No 342
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.37 E-value=0.0092 Score=45.65 Aligned_cols=25 Identities=44% Similarity=0.476 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|..|+|||||.+.+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 343
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.37 E-value=0.0092 Score=44.70 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
--|.|+|..|+|||||.+.+.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 344
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.37 E-value=0.0093 Score=45.01 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-|.|+|.+|+|||||.+.+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568999999999999999998754
No 345
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.37 E-value=0.0099 Score=45.71 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=23.4
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 158 LTEEPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 158 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+...+.--|.|+|.+|+|||||.+.+.+.
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34445567999999999999999999654
No 346
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.37 E-value=0.0092 Score=51.23 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45689999999999999999998743
No 347
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.35 E-value=0.01 Score=49.51 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+...|+|+|.+|+|||||.+.+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34689999999999999999998763
No 348
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.35 E-value=0.0094 Score=44.98 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|.|+|.+|+|||||.+.+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998653
No 349
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.34 E-value=0.0094 Score=45.92 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..-|.|+|.+|+|||||.+.+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 35578999999999999999997653
No 350
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.33 E-value=0.0097 Score=44.80 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998765
No 351
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.33 E-value=0.0076 Score=50.30 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~ 186 (243)
|+|+|..|+|||||.+.++..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 499999999999999998753
No 352
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.32 E-value=0.0096 Score=51.00 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|+.|.|||||.+.+..-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999998743
No 353
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.32 E-value=0.03 Score=45.07 Aligned_cols=52 Identities=15% Similarity=0.313 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHH
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIA 216 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~ 216 (243)
-..|.|.|..|+||||+++.+.+.. .. ..+..+....-+......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l-~~-~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL-QQ-NGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH-HH-TTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCCCeeeeecCCCCCHHHHHHHHHH
Confidence 4689999999999999999999987 43 3455344443332223344455554
No 354
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.31 E-value=0.0096 Score=45.96 Aligned_cols=26 Identities=38% Similarity=0.370 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...-|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35578999999999999999998753
No 355
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.31 E-value=0.0069 Score=55.47 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=31.7
Q ss_pred CcccccHHHHHHHHHHhcCCCce-----------EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTEEPVG-----------IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|.+..+..+.-.|.....+ -+-++|.+|+|||+||+.+.+..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 34567766555554444433211 47899999999999999998864
No 356
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.31 E-value=0.0098 Score=44.76 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-|.|+|.+|+|||||.+.+....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 357
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.30 E-value=0.011 Score=50.09 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+..+++|+|.+|+|||||.+.+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999753
No 358
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.011 Score=45.28 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4568999999999999999998764
No 359
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.30 E-value=0.011 Score=56.29 Aligned_cols=45 Identities=29% Similarity=0.460 Sum_probs=36.5
Q ss_pred cccccHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 143 AVVGFQSTLDRVWRCLTEE---------PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 143 ~~vG~~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++|.+..++.+...+... ....+-|+|+.|+|||+||+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689998888887776431 23588999999999999999999875
No 360
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.30 E-value=0.0074 Score=45.44 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
--|.++|.+|+|||||.+.+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468899999999999999998753
No 361
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.29 E-value=0.037 Score=43.72 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHH
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
..|.|-|..|+||||+++.+.+.. ... .+..+....-+......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l-~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL-EQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-HHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 478999999999999999999987 433 3433333333333334556666665
No 362
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.29 E-value=0.01 Score=50.79 Aligned_cols=26 Identities=42% Similarity=0.489 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998643
No 363
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.29 E-value=0.011 Score=45.51 Aligned_cols=23 Identities=39% Similarity=0.354 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
..-|.|+|.+|+|||||.+.+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999875
No 364
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.01 Score=45.64 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..--|.|+|.+|+|||||++.+.+..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45578999999999999999998763
No 365
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.28 E-value=0.01 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.--|.|+|.+|+|||||.+.+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999999876
No 366
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.28 E-value=0.0078 Score=46.52 Aligned_cols=23 Identities=39% Similarity=0.407 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQIN 184 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~ 184 (243)
....|.|+|.+|+|||||.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999984
No 367
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.01 Score=44.55 Aligned_cols=25 Identities=40% Similarity=0.429 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|..|+|||||.+.+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4468999999999999999998754
No 368
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.24 E-value=0.01 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...++|+|..|.|||||++.+..-.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999988765
No 369
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.22 E-value=0.01 Score=45.43 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|..|+|||||.+.+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998754
No 370
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.22 E-value=0.011 Score=45.61 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..-|.|+|.+|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 35678999999999999999998764
No 371
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.21 E-value=0.02 Score=47.80 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 151 LDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 151 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++|.+.+.. .+++++|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4555555543 478999999999999999998 54
No 372
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.21 E-value=0.011 Score=45.12 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|..|+|||||.+.+.+..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998764
No 373
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.21 E-value=0.0095 Score=45.90 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
..-|.++|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999987774
No 374
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.20 E-value=0.016 Score=49.54 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+-.+++|+|+.|.|||||.+.+....
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 334599999999999999999987654
No 375
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.19 E-value=0.011 Score=50.58 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34689999999999999999998753
No 376
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.19 E-value=0.012 Score=49.97 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+..+|+|+|.+|+|||||++.+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999997653
No 377
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.18 E-value=0.011 Score=46.10 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..--|.|+|.+|+|||||++.+.+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35578999999999999999998763
No 378
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.17 E-value=0.012 Score=45.15 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578899999999999999998764
No 379
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.17 E-value=0.013 Score=47.82 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|+++|.+|+|||||.+.+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998753
No 380
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.012 Score=45.08 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-|.|+|.+|+|||||.+.+.+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 4568999999999999999998753
No 381
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.16 E-value=0.012 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998754
No 382
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.16 E-value=0.012 Score=50.57 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45689999999999999999998753
No 383
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.14 E-value=0.012 Score=44.87 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998764
No 384
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.14 E-value=0.011 Score=45.60 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||++.+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998764
No 385
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.14 E-value=0.012 Score=50.71 Aligned_cols=26 Identities=35% Similarity=0.271 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34689999999999999999998653
No 386
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.14 E-value=0.012 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998753
No 387
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.12 E-value=0.012 Score=44.95 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|..|+|||||.+.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998754
No 388
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.12 E-value=0.012 Score=46.29 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999987753
No 389
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.012 Score=45.79 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-|.|+|.+|+|||||++.+.+..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578999999999999999987653
No 390
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.10 E-value=0.014 Score=50.28 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-.+++|+|+.|+|||||++.+....
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455789999999999999999997754
No 391
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.10 E-value=0.0085 Score=48.73 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+...|.|.|..|+||||+++.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998765
No 392
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.10 E-value=0.012 Score=50.73 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+.--.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34689999999999999999998754
No 393
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.013 Score=44.71 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998763
No 394
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.08 E-value=0.013 Score=50.54 Aligned_cols=26 Identities=35% Similarity=0.289 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45689999999999999999998643
No 395
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.07 E-value=0.012 Score=47.10 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....|+|+|..|+|||||.+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 46689999999999999999998764
No 396
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.07 E-value=0.013 Score=49.94 Aligned_cols=34 Identities=32% Similarity=0.316 Sum_probs=27.1
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 154 VWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 154 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++.+.. .+-.+++|+|..|+|||||.+.+.+..
T Consensus 61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444433 356789999999999999999999976
No 397
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.06 E-value=0.013 Score=45.21 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...-|.|+|.+|+|||||.+.+.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 45689999999999999999997653
No 398
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.05 E-value=0.013 Score=44.66 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-|.|+|..|+|||||.+.+.+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 5679999999999999999998653
No 399
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.05 E-value=0.014 Score=46.73 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-++|.|++|+||||+|+.+.+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 400
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.05 E-value=0.062 Score=45.55 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAKK 218 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~~ 218 (243)
.-.++.|.|.+|+||||||..+..+. ...+ ..++|++. ..+...+...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~-a~~g--~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSA-LNDD--RGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HHTT--CEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEeC--CCCHHHHHHHHHHH
Confidence 34588899999999999999998876 3311 34566554 45666666666544
No 401
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.04 E-value=0.012 Score=45.26 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999999987653
No 402
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.03 E-value=0.03 Score=44.60 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=34.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHH
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
.....|.|.|..|+||||+++.+.+.. .....++......-+......+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l-~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL-SEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-hhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 346789999999999999999999987 33123443331222222223445555554
No 403
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.02 E-value=0.012 Score=45.47 Aligned_cols=26 Identities=27% Similarity=0.209 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..--|.|+|..|+|||||.+.+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999987653
No 404
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.02 E-value=0.016 Score=50.38 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+|.|.|+.|+||||||..+....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998865
No 405
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.01 E-value=0.013 Score=45.30 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-|.|+|.+|+|||||.+.+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 406
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.00 E-value=0.028 Score=50.36 Aligned_cols=44 Identities=9% Similarity=0.029 Sum_probs=33.5
Q ss_pred ccccHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 144 VVGFQSTLDRVWRCLT--EEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 144 ~vG~~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+.+..+.+.+... ..+..+|.+.|+.|+||||+|+.+....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3555555556666552 2356789999999999999999999987
No 407
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.97 E-value=0.017 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.|+|+.|+||||++..+..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999985555443
No 408
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.95 E-value=0.01 Score=50.68 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34689999999999999999998753
No 409
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.95 E-value=0.014 Score=45.33 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-|.|+|.+|+|||||.+.+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998753
No 410
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.93 E-value=0.013 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
-++|+|..|+|||||.+.+...
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999999864
No 411
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.92 E-value=0.011 Score=56.10 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=37.0
Q ss_pred CcccccHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 142 PAVVGFQSTLDRVWRCLTE-------------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 142 ~~~vG~~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++.|.+..++.|.+.+.- .....+.++|++|+||||||+.+.+..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 4568888888888887642 134568899999999999999999976
No 412
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.91 E-value=0.016 Score=45.78 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+...|.|+|.+|+|||||++.+.+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35679999999999999999998764
No 413
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.91 E-value=0.013 Score=45.80 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
..--|.|+|.+|+|||||.+.+.+.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999764
No 414
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.90 E-value=0.015 Score=45.08 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-|.|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578999999999999999998653
No 415
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.015 Score=44.47 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|..|+|||||.+.+.+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998763
No 416
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.90 E-value=0.026 Score=46.95 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 151 LDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 151 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
++++...+.. .+++|+|+.|+|||||.+.+....
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhcccc
Confidence 4455555543 478999999999999999998653
No 417
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.89 E-value=0.039 Score=47.77 Aligned_cols=52 Identities=17% Similarity=0.064 Sum_probs=35.9
Q ss_pred HHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhccc-CCCCCEEEEEEecCcc
Q 038742 153 RVWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSFLHT-SNNFDFVIWEVVSRDL 206 (243)
Q Consensus 153 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v-~~~F~~~~wv~vs~~~ 206 (243)
.+++.+.. .+-..++|+|..|+|||||++.+.+.. .. ...++|+ .+-+.+..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i-~~~~~~v~~I-~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI-AYNHPDCVLM-VLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH-HHHCTTSEEE-EEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH-hhcCCCeeEE-EEEecCCh
Confidence 35565554 356689999999999999999988764 22 2345544 46677654
No 418
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.89 E-value=0.013 Score=44.41 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.--|.|+|..|+|||||.+.+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 419
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.87 E-value=0.012 Score=45.19 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|..|+|||||.+.+.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998654
No 420
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.87 E-value=0.012 Score=50.36 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|.|||||++.+....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34589999999999999999998764
No 421
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.86 E-value=0.019 Score=43.92 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|.|+|..|+|||||.+.+.+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5689999999999999999998754
No 422
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.86 E-value=0.015 Score=44.95 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...-|.|+|.+|+|||||++.+.+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 35679999999999999999997653
No 423
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.85 E-value=0.009 Score=51.08 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|.|||||.+.+..-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998643
No 424
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.84 E-value=0.016 Score=44.80 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-|.|+|.+|+|||||.+.+.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468999999999999999998753
No 425
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.83 E-value=0.016 Score=45.07 Aligned_cols=25 Identities=28% Similarity=0.200 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||++.+.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998653
No 426
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.83 E-value=0.015 Score=48.63 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+...|+|+|.+|+|||||.+.+....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 36789999999999999999998764
No 427
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.80 E-value=0.015 Score=48.47 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|+|+|.+|+|||||.+.+....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999998764
No 428
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.80 E-value=0.017 Score=49.47 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|+|..|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999998754
No 429
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.80 E-value=0.0093 Score=45.07 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=10.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999988755
No 430
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.77 E-value=0.017 Score=45.52 Aligned_cols=24 Identities=38% Similarity=0.340 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
...-|.|+|.+|+|||||.+.+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999874
No 431
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.76 E-value=0.028 Score=47.43 Aligned_cols=41 Identities=7% Similarity=0.261 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 147 FQSTLDRVWRCLTEEP-VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 147 ~~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.++..+.+.+.+..++ .+.+-++|+.|+||||+|+.+.+..
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 4566777888887765 4578999999999999999998875
No 432
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.75 E-value=0.036 Score=48.67 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHhcC-----------CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 145 VGFQSTLDRVWRCLTE-----------EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 145 vG~~~~~~~l~~~L~~-----------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|.++-++.+.+.+.. +....|+|+|.+|+|||||.+.+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 4667777777766641 124589999999999999999998764
No 433
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.75 E-value=0.017 Score=50.02 Aligned_cols=25 Identities=44% Similarity=0.557 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4568999999999999999999863
No 434
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.73 E-value=0.02 Score=44.88 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-+.|.|.|..|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998764
No 435
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.72 E-value=0.022 Score=45.56 Aligned_cols=23 Identities=35% Similarity=0.276 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|-+.|.||+||||+|..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47788999999999998888876
No 436
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.72 E-value=0.018 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998753
No 437
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.70 E-value=0.012 Score=44.84 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|..|+|||||.+.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998764
No 438
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.70 E-value=0.017 Score=44.62 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.8
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLH-GMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~-G~gGiGKTtLa~~v~~~~ 187 (243)
++|+|+ +-||+||||+|..+....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l 26 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL 26 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH
Confidence 688888 778899999999988775
No 439
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.70 E-value=0.022 Score=44.56 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+|.|+.|+||||+++.+....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998875
No 440
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.70 E-value=0.027 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+|.|+|+.|+|||||++.+....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999999876
No 441
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.67 E-value=0.025 Score=44.34 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+..+|+|+||+|+||+|.|..+-+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999999987754
No 442
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.016 Score=51.40 Aligned_cols=26 Identities=23% Similarity=0.115 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|..|+|||||++.+..-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45689999999999999999998754
No 443
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.61 E-value=0.013 Score=49.49 Aligned_cols=25 Identities=32% Similarity=0.250 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|..|.|||||++.+..-.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998864
No 444
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.60 E-value=0.017 Score=45.02 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.--|.|+|..|+|||||.+.+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998865
No 445
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.60 E-value=0.019 Score=51.91 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|+.|.|||||++.+..-.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999999864
No 446
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.54 E-value=0.024 Score=45.73 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
....|+|+|.+|+|||||.+.+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999765
No 447
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.54 E-value=0.024 Score=48.28 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=24.5
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 158 LTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 158 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.....+++.+.|.||+||||+|..+....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 334557889999999999999999887654
No 448
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.52 E-value=0.046 Score=44.77 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 150 TLDRVWRCLTEE--PVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 150 ~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
-..-+..||... +-.-|-++|++|.|||++|..+.+.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 345567777654 3557999999999999999999885
No 449
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.51 E-value=0.024 Score=50.95 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|.++|++|.||||+|+.+....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997765
No 450
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.53 E-value=0.0065 Score=47.05 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=24.2
Q ss_pred HHHhcCCCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 155 WRCLTEEPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 155 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+.+...+.--|.|+|.+|+|||||.+.+.+.
T Consensus 22 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 22 ENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 33344455567899999999999999877654
No 451
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.49 E-value=0.022 Score=46.29 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
+.|+++|.+|+|||||.+.+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999876
No 452
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.46 E-value=0.015 Score=46.29 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.|+|.|-||+||||+|..+....
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~l 24 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIM 24 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 47789999999999999998876
No 453
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.46 E-value=0.021 Score=46.11 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|+++|.+|+|||||.+.+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4568999999999999999998754
No 454
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.45 E-value=0.018 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 038742 166 VGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 166 i~I~G~gGiGKTtLa~~v~~~~ 187 (243)
|+|+|..|+|||||++.+....
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 4999999999999999998754
No 455
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.44 E-value=0.019 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|+.|+|||||++.+..-.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998754
No 456
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.40 E-value=0.085 Score=41.74 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-..|.+-|..|+||||+++.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999987
No 457
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.40 E-value=0.022 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|..|.|||||++.+..-.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998643
No 458
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.38 E-value=0.094 Score=48.34 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHH
Q 038742 149 STLDRVWRCLTEEPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 149 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
...+.+...|...+ +.-|+|++|.|||+.+-.+.... - +. ...+.||...+..+..++..+..
T Consensus 193 ~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l-~-~~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 193 SQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQA-V-KQ--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHH-H-HT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHH-H-hC--CCeEEEEcCchHHHHHHHHHHHh
Confidence 34555555564443 45689999999997554444333 1 22 23678887777677777776643
No 459
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.36 E-value=0.022 Score=51.45 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|+.|.|||||++.+..-.
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999998743
No 460
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.36 E-value=0.031 Score=41.46 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINN 185 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~ 185 (243)
..+..|+|+.|.|||||..+++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999999874
No 461
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.36 E-value=0.025 Score=50.07 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...+|.++|++|+||||+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999998875
No 462
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.35 E-value=0.024 Score=49.83 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=26.8
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 154 VWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 154 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+++.+.. .+-.+++|+|..|+|||||++.+....
T Consensus 147 vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 147 AINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEeeeEEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3443333 356789999999999999999999975
No 463
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.35 E-value=0.024 Score=44.80 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
-|.|+|-+|+|||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 5789999999999999988765
No 464
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.024 Score=44.57 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988753
No 465
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.34 E-value=0.023 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|+.|.|||||++.+..-.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999999854
No 466
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.33 E-value=0.042 Score=45.11 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....|+|+|.+|+|||||.+.+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 46689999999999999999998764
No 467
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.32 E-value=0.019 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
--|+|+|.+|+|||||.+.++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999997654
No 468
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.32 E-value=0.03 Score=42.49 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 161 EPVGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 161 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+.--|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 45667999999999999999998543
No 469
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.30 E-value=0.048 Score=44.20 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+...|+++|..|+|||||.+.+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998764
No 470
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.29 E-value=0.025 Score=50.34 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|+|+.|.|||||.+.+..-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 899999999999999999998653
No 471
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.27 E-value=0.013 Score=45.90 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+...|+|+|..|+|||||.+.+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998764
No 472
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.24 E-value=0.11 Score=45.98 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=47.1
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCccc-HHHHHHHHHHH
Q 038742 154 VWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQ-LEKMQESIAKK 218 (243)
Q Consensus 154 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~I~~~ 218 (243)
.++.|.. .+-.-++|.|..|+|||+|++.+.++. .+.+-+.++++-+.+... +.++.+++.+.
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~--~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT--TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhh--HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4665654 355679999999999999999998864 133457788888887654 67788888764
No 473
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.24 E-value=0.024 Score=48.63 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.++|+|+|.+|+|||||.+.+....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46789999999999999999998764
No 474
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.026 Score=51.71 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.+++|+|..|.|||||++.+..-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 579999999999999999998754
No 475
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.16 E-value=0.089 Score=44.50 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=24.3
Q ss_pred hcCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 158 LTEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 158 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.....+++.+.|-||+||||+|..+....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l 40 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL 40 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 334456788888999999999999988765
No 476
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.16 E-value=0.012 Score=49.42 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+++|+|+.|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999999754
No 477
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.16 E-value=0.031 Score=45.91 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999874
No 478
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.15 E-value=0.029 Score=43.98 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.8
Q ss_pred EEEEE-cCCCCcHHHHHHHHHhhh
Q 038742 165 IVGLH-GMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 165 vi~I~-G~gGiGKTtLa~~v~~~~ 187 (243)
+|+|+ +-||+||||+|..+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~l 25 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYL 25 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH
Confidence 67776 788999999999998876
No 479
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.09 E-value=0.14 Score=45.24 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=39.8
Q ss_pred HHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-cHHHHHHHHHH
Q 038742 155 WRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDL-QLEKMQESIAK 217 (243)
Q Consensus 155 ~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~-~~~~i~~~I~~ 217 (243)
++.|.. .+-..++|+|..|+|||||++.+..+. ... +-+.++++.+.+.. ...++..++..
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~-~~~-~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI-AQE-HGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH-HHH-TCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh-hhc-cCcEEEEeeeccCchHHHHHHHHhhh
Confidence 444543 123468999999999999999998875 322 22445667776654 35566665543
No 480
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.028 Score=51.53 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
.-.+++|+|+.|+|||||.+.+..-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 35689999999999999999998754
No 481
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.07 E-value=0.034 Score=47.68 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.8
Q ss_pred CceEEEEEc-CCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHG-MGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G-~gGiGKTtLa~~v~~~~ 187 (243)
+.++|+|+| -||+||||+|-.+....
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~L 168 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAH 168 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHH
Confidence 578999995 99999999999888765
No 482
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.06 E-value=0.055 Score=44.02 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
....|.++|..|+|||||.+.+.+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998764
No 483
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.06 E-value=0.035 Score=44.13 Aligned_cols=50 Identities=18% Similarity=0.124 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESI 215 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I 215 (243)
.-.++-|.|.+|+||||||.++..+. - ...-..+++++.. .+...+.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~-~~~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-A-EEYGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-H-HHHCCCEEEEESS--SCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-H-HhcCCCceeeccc--CCHHHHHHHH
Confidence 35688999999999999998865432 1 1111234555443 3455555444
No 484
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.98 E-value=0.031 Score=48.02 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 038742 165 IVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 165 vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.|+|+|.+|+|||||.+.+...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999875
No 485
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.97 E-value=0.081 Score=47.85 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHHh--cCCCceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 145 VGFQSTLDRVWRCL--TEEPVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 145 vG~~~~~~~l~~~L--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+.+.+..+.+.... ......+|.+.|+.|+||||+|+.+....
T Consensus 352 ~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 352 FTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 34444555555555 22346789999999999999999998875
No 486
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.97 E-value=0.033 Score=48.24 Aligned_cols=24 Identities=38% Similarity=0.510 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
-..++|+|.+|+|||||.+.+...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999884
No 487
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.96 E-value=0.012 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=5.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.--|.|+|..|+|||||.+.+...
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999988776
No 488
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.95 E-value=0.023 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
--|+|+|..|+|||||++.++..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC
Confidence 34699999999999999998764
No 489
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.95 E-value=0.031 Score=45.40 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
...|+++|.+|+|||||.+.+....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 3468999999999999999998753
No 490
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.93 E-value=0.075 Score=43.81 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..-.++++|.+|+|||||.+.+....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34578999999999999999998753
No 491
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.92 E-value=0.14 Score=44.94 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=35.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIAK 217 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~~ 217 (243)
.-.++.|.|.+|+||||||..+..+. -.... ..++|++.. .+...+...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~-a~~~g-~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA-ALKEG-VGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HHTTC-CCEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHhCC-CeEEEEECC--CCHHHHHHHHHH
Confidence 34588999999999999999998875 32211 246666654 345566655543
No 492
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.91 E-value=0.11 Score=45.66 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=33.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCcccHHHHHHHHH
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQLEKMQESIA 216 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~~~~i~~~I~ 216 (243)
+-.++-|.|.+|+||||||..+..+. -..+ ..++|++... +...+...++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~-a~~g--~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH-HHTT--CEEEEECSSS--CTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH-HHcC--CEEEEEECCC--CHHHHHHHHH
Confidence 34689999999999999999998876 3332 3566666543 3334444443
No 493
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=93.90 E-value=0.042 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 038742 164 GIVGLHGMGGVGKTTLLTQINNS 186 (243)
Q Consensus 164 ~vi~I~G~gGiGKTtLa~~v~~~ 186 (243)
.+|+|.|+.|+||||+|+.+-..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999775
No 494
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.89 E-value=0.03 Score=51.30 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
-.+++|+|..|.|||||++.+..-.
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4689999999999999999998643
No 495
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.87 E-value=0.018 Score=45.17 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHH-HHhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQ-INNS 186 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~-v~~~ 186 (243)
.--|.|+|.+|+|||||.+. +.+.
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 44689999999999999998 4443
No 496
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.85 E-value=0.13 Score=45.76 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=47.0
Q ss_pred HHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHhhhcccCCCCCEEEEEEecCccc-HHHHHHHHHHH
Q 038742 154 VWRCLTE-EPVGIVGLHGMGGVGKTTLLTQINNSFLHTSNNFDFVIWEVVSRDLQ-LEKMQESIAKK 218 (243)
Q Consensus 154 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~v~~~F~~~~wv~vs~~~~-~~~i~~~I~~~ 218 (243)
.++.|.. .+-.-++|.|-.|+|||+|++.+.++. .+.+-+.++++-+.+... ..++.+++.+.
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 3555554 345679999999999999999998874 134557888888887664 67788887653
No 497
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.83 E-value=0.046 Score=43.51 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 163 VGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 163 ~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
..+|+|.|+.|+||||+|+.+....
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4699999999999999999998865
No 498
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.80 E-value=0.036 Score=47.25 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+...|+++|.+|+|||||.+.+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998753
No 499
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.80 E-value=0.032 Score=50.86 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|+.|.|||||++.+..-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45689999999999999999998654
No 500
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.79 E-value=0.033 Score=50.76 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhh
Q 038742 162 PVGIVGLHGMGGVGKTTLLTQINNSF 187 (243)
Q Consensus 162 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 187 (243)
+-.+++|+|+.|.|||||++.+..-.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
Done!