Query 038745
Match_columns 881
No_of_seqs 334 out of 1418
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 02:52:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09192 Act-Frag_cataly: Acti 100.0 1.6E-60 3.4E-65 502.7 4.5 246 91-386 2-263 (275)
2 cd05124 AFK Actin-Fragmin Kina 100.0 1E-52 2.2E-57 433.8 11.1 209 138-370 1-212 (238)
3 KOG1718 Dual specificity phosp 100.0 3.7E-33 8E-38 275.7 16.1 166 653-822 15-181 (198)
4 smart00195 DSPc Dual specifici 100.0 2.7E-30 5.9E-35 243.6 17.3 138 655-796 1-138 (138)
5 KOG1716 Dual specificity phosp 100.0 4.6E-30 1E-34 273.2 17.5 151 653-804 73-223 (285)
6 KOG1717 Dual specificity phosp 100.0 3.4E-30 7.3E-35 268.9 12.2 144 651-798 168-313 (343)
7 PF00782 DSPc: Dual specificit 100.0 1.9E-28 4.1E-33 229.0 12.8 133 662-796 1-133 (133)
8 cd00127 DSPc Dual specificity 100.0 1.2E-27 2.6E-32 223.9 16.8 138 655-794 2-139 (139)
9 PRK12361 hypothetical protein; 99.9 2.5E-23 5.4E-28 238.7 17.6 143 654-797 94-237 (547)
10 PTZ00242 protein tyrosine phos 99.8 5E-18 1.1E-22 168.9 14.6 126 671-799 31-160 (166)
11 PTZ00393 protein tyrosine phos 99.7 2.3E-17 5E-22 172.8 13.5 127 671-801 107-233 (241)
12 KOG1720 Protein tyrosine phosp 99.7 2.7E-17 5.9E-22 168.4 13.3 162 617-795 29-206 (225)
13 KOG1719 Dual specificity phosp 99.7 3.5E-17 7.6E-22 161.1 11.7 145 657-801 27-174 (183)
14 COG2453 CDC14 Predicted protei 99.5 4E-14 8.7E-19 142.2 11.6 99 698-799 68-167 (180)
15 TIGR01244 conserved hypothetic 99.0 3.7E-09 8E-14 102.1 12.6 118 656-780 3-128 (135)
16 PF03162 Y_phosphatase2: Tyros 99.0 5.1E-10 1.1E-14 111.9 6.0 118 655-775 7-129 (164)
17 PF05706 CDKN3: Cyclin-depende 98.9 1.4E-09 2.9E-14 109.5 6.0 100 670-770 61-168 (168)
18 smart00404 PTPc_motif Protein 98.8 5.4E-08 1.2E-12 86.1 11.4 84 707-790 7-99 (105)
19 smart00012 PTPc_DSPc Protein t 98.8 5.4E-08 1.2E-12 86.1 11.4 84 707-790 7-99 (105)
20 KOG2836 Protein tyrosine phosp 98.8 7.5E-08 1.6E-12 94.2 12.6 117 672-795 33-151 (173)
21 PF04273 DUF442: Putative phos 98.5 3.4E-07 7.3E-12 86.7 8.1 93 656-754 3-103 (110)
22 COG5350 Predicted protein tyro 98.5 9.9E-07 2.2E-11 87.9 10.2 116 673-789 25-147 (172)
23 cd00047 PTPc Protein tyrosine 98.3 2.1E-06 4.6E-11 88.3 9.9 55 736-790 166-225 (231)
24 smart00194 PTPc Protein tyrosi 98.2 6.7E-06 1.4E-10 86.3 10.6 55 736-790 193-252 (258)
25 PLN02727 NAD kinase 98.2 5.2E-06 1.1E-10 100.8 10.5 103 659-765 260-370 (986)
26 PF13350 Y_phosphatase3: Tyros 98.1 7.2E-06 1.6E-10 81.1 6.8 113 658-771 16-158 (164)
27 PRK15375 pathogenicity island 98.0 4.2E-05 9E-10 88.4 11.3 61 738-798 468-530 (535)
28 KOG2283 Clathrin coat dissocia 97.8 6E-05 1.3E-09 86.3 9.2 149 637-795 16-172 (434)
29 KOG1572 Predicted protein tyro 97.7 0.00014 3E-09 77.2 8.7 117 656-775 61-186 (249)
30 COG3453 Uncharacterized protei 97.6 0.00033 7.1E-09 67.9 9.9 112 656-775 4-124 (130)
31 PF00102 Y_phosphatase: Protei 97.5 0.00042 9.1E-09 70.1 9.8 66 725-790 155-229 (235)
32 PF04179 Init_tRNA_PT: Initiat 97.5 0.00098 2.1E-08 76.9 13.0 134 658-793 292-449 (451)
33 PHA02742 protein tyrosine phos 97.4 0.00097 2.1E-08 72.9 10.9 50 736-785 229-283 (303)
34 PF14566 PTPlike_phytase: Inos 97.4 0.00029 6.3E-09 69.6 5.9 58 701-760 91-148 (149)
35 KOG2386 mRNA capping enzyme, g 97.4 0.0004 8.6E-09 78.6 7.4 142 655-798 38-186 (393)
36 PHA02746 protein tyrosine phos 97.2 0.0014 3.1E-08 72.4 9.3 55 737-791 248-310 (323)
37 COG2365 Protein tyrosine/serin 97.2 0.0023 4.9E-08 68.4 10.4 62 723-784 122-184 (249)
38 PHA02747 protein tyrosine phos 97.1 0.0021 4.6E-08 70.6 10.3 49 737-785 230-283 (312)
39 PHA02740 protein tyrosine phos 97.1 0.0018 3.9E-08 71.0 9.5 55 736-790 221-283 (298)
40 PHA02738 hypothetical protein; 96.7 0.0088 1.9E-07 66.1 10.8 51 736-786 227-282 (320)
41 KOG0792 Protein tyrosine phosp 96.5 0.0058 1.3E-07 75.5 8.1 78 710-787 1036-1119(1144)
42 COG5599 PTP2 Protein tyrosine 95.5 0.037 7.9E-07 60.3 7.2 84 710-797 193-293 (302)
43 KOG0789 Protein tyrosine phosp 95.0 0.096 2.1E-06 58.5 9.0 51 735-785 298-354 (415)
44 KOG0790 Protein tyrosine phosp 94.1 0.051 1.1E-06 62.5 4.5 47 734-780 449-503 (600)
45 PF14671 DSPn: Dual specificit 93.2 0.39 8.5E-06 48.1 8.2 101 658-777 4-111 (141)
46 PF07805 HipA_N: HipA-like N-t 91.3 0.26 5.5E-06 43.9 4.0 44 164-207 24-70 (81)
47 KOG0791 Protein tyrosine phosp 91.3 0.56 1.2E-05 53.3 7.5 75 715-792 269-348 (374)
48 cd05154 ACAD10_11_like Acyl-Co 84.7 3 6.4E-05 41.4 7.1 38 248-285 75-113 (223)
49 KOG4228 Protein tyrosine phosp 82.7 1.3 2.8E-05 56.1 4.4 95 92-205 119-213 (1087)
50 PF01636 APH: Phosphotransfera 82.0 1.9 4.2E-05 42.6 4.6 80 167-285 21-103 (239)
51 cd05151 ChoK Choline Kinase (C 78.1 2.7 5.8E-05 40.3 4.0 59 248-315 66-124 (170)
52 PRK04750 ubiB putative ubiquin 74.6 14 0.0003 44.4 9.4 150 145-316 131-297 (537)
53 cd05157 ETNK_euk Ethanolamine 71.2 22 0.00047 36.5 8.8 101 139-288 1-105 (235)
54 KOG0793 Protein tyrosine phosp 70.5 12 0.00026 46.1 7.5 60 736-795 927-993 (1004)
55 PRK10359 lipopolysaccharide co 69.3 5.1 0.00011 43.1 3.9 57 246-316 116-172 (232)
56 KOG0577 Serine/threonine prote 68.3 6.7 0.00014 47.8 4.8 96 206-317 66-164 (948)
57 cd01518 RHOD_YceA Member of th 66.6 20 0.00043 32.5 6.6 29 734-765 59-87 (101)
58 KOG4228 Protein tyrosine phosp 64.9 13 0.00027 47.8 6.5 45 736-780 1018-1067(1087)
59 PF06176 WaaY: Lipopolysacchar 63.0 7 0.00015 42.3 3.5 59 246-318 116-174 (229)
60 cd05156 ChoK_euk Choline Kinas 60.9 59 0.0013 34.9 10.0 38 250-289 74-111 (302)
61 cd05155 APH_ChoK_like_1 Unchar 59.2 19 0.00041 37.5 5.7 33 248-285 69-101 (235)
62 TIGR03843 conserved hypothetic 57.8 6.1 0.00013 43.2 1.9 60 136-203 17-77 (253)
63 TIGR01982 UbiB 2-polyprenylphe 57.8 29 0.00063 40.4 7.5 63 247-316 232-294 (437)
64 KOG4471 Phosphatidylinositol 3 55.0 21 0.00045 43.4 5.7 43 718-760 356-399 (717)
65 cd05120 APH_ChoK_like Aminogly 53.8 91 0.002 28.1 8.6 59 247-315 67-125 (155)
66 cd05039 PTKc_Csk_like Catalyti 53.0 48 0.001 33.7 7.4 63 246-316 73-139 (256)
67 cd05056 PTKc_FAK Catalytic dom 51.9 36 0.00077 35.0 6.3 121 147-316 20-144 (270)
68 PRK12274 serine/threonine prot 51.4 27 0.00059 37.6 5.4 18 246-263 71-88 (218)
69 cd05144 RIO2_C RIO kinase fami 44.5 21 0.00046 35.9 3.3 57 248-316 106-162 (198)
70 cd06610 STKc_OSR1_SPAK Catalyt 43.5 85 0.0018 31.8 7.5 18 247-264 73-90 (267)
71 PF00454 PI3_PI4_kinase: Phosp 43.3 27 0.00059 36.4 3.9 32 272-313 118-149 (235)
72 PF06602 Myotub-related: Myotu 41.8 37 0.00081 38.7 5.0 20 734-753 229-248 (353)
73 PF07804 HipA_C: HipA-like C-t 40.9 21 0.00046 31.7 2.3 23 275-297 38-60 (79)
74 PF15632 ATPgrasp_Ter: ATP-gra 40.3 43 0.00094 38.1 5.2 119 187-316 112-281 (329)
75 PLN02876 acyl-CoA dehydrogenas 39.3 1.1E+02 0.0023 38.7 8.8 37 248-284 119-155 (822)
76 PRK09775 putative DNA-binding 38.2 45 0.00098 39.3 5.1 38 167-204 222-268 (442)
77 TIGR03724 arch_bud32 Kae1-asso 37.9 17 0.00037 36.1 1.4 54 247-313 71-124 (199)
78 KOG1235 Predicted unusual prot 37.4 20 0.00044 43.2 2.1 153 141-316 169-338 (538)
79 PRK14879 serine/threonine prot 37.2 22 0.00047 35.6 2.0 57 247-313 73-129 (211)
80 PRK15123 lipopolysaccharide co 37.1 1.6E+02 0.0034 32.4 8.7 60 246-314 108-173 (268)
81 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 37.1 89 0.0019 32.4 6.6 61 248-316 82-145 (284)
82 PF01163 RIO1: RIO1 family; I 36.8 13 0.00029 38.5 0.5 68 243-317 76-145 (188)
83 cd05046 PTK_CCK4 Pseudokinase 36.0 2E+02 0.0044 29.5 9.0 62 247-316 82-154 (275)
84 cd06657 STKc_PAK4 Catalytic do 35.3 66 0.0014 34.2 5.4 62 247-316 91-153 (292)
85 PF00581 Rhodanese: Rhodanese- 34.8 1.2E+02 0.0025 27.1 6.1 60 706-765 34-98 (113)
86 PF03861 ANTAR: ANTAR domain; 33.1 47 0.001 28.0 3.1 26 751-776 15-40 (56)
87 KOG0612 Rho-associated, coiled 33.0 23 0.00049 46.1 1.7 68 248-327 150-222 (1317)
88 smart00400 ZnF_CHCC zinc finge 32.6 49 0.0011 27.6 3.1 32 740-773 23-54 (55)
89 cd01533 4RHOD_Repeat_2 Member 32.4 79 0.0017 29.0 4.7 27 735-764 65-91 (109)
90 KOG1089 Myotubularin-related p 32.2 64 0.0014 39.3 5.1 38 722-759 329-368 (573)
91 cd05071 PTKc_Src Catalytic dom 32.0 1.9E+02 0.004 29.9 7.9 17 248-264 75-91 (262)
92 cd01522 RHOD_1 Member of the R 31.2 1.5E+02 0.0034 27.8 6.6 29 734-765 62-90 (117)
93 cd06615 PKc_MEK Catalytic doma 31.1 1.7E+02 0.0036 31.2 7.6 63 247-316 73-137 (308)
94 cd05040 PTKc_Ack_like Catalyti 31.1 1.1E+02 0.0023 31.2 5.9 79 145-264 7-86 (257)
95 cd06648 STKc_PAK_II Catalytic 30.9 1E+02 0.0022 32.4 5.9 62 247-316 90-152 (285)
96 cd05122 PKc_STE Catalytic doma 30.3 1.6E+02 0.0034 29.2 6.8 18 246-263 70-87 (253)
97 COG0478 RIO-like serine/threon 29.4 2.2E+02 0.0047 32.5 8.2 65 243-319 177-242 (304)
98 PLN02160 thiosulfate sulfurtra 29.2 73 0.0016 31.2 4.2 29 734-765 79-107 (136)
99 PRK05231 homoserine kinase; Pr 28.9 1.5E+02 0.0033 32.0 7.0 33 247-284 96-128 (319)
100 cd05150 APH Aminoglycoside 3'- 28.6 32 0.0007 35.6 1.7 38 248-285 67-104 (244)
101 PTZ00263 protein kinase A cata 28.5 1.5E+02 0.0032 32.2 6.7 62 247-316 92-155 (329)
102 cd06649 PKc_MEK2 Catalytic dom 28.2 1.9E+02 0.0041 31.3 7.6 63 247-316 77-141 (331)
103 cd05152 MPH2' Macrolide 2'-Pho 28.1 2.6E+02 0.0057 30.5 8.6 55 139-199 14-72 (276)
104 PF13535 ATP-grasp_4: ATP-gras 27.8 84 0.0018 30.6 4.3 69 185-257 7-90 (184)
105 cd05595 STKc_PKB_beta Catalyti 27.2 1.7E+02 0.0037 31.6 7.0 62 247-316 69-132 (323)
106 cd05115 PTKc_Zap-70 Catalytic 26.8 2.6E+02 0.0056 28.8 7.9 61 247-315 68-131 (257)
107 PRK10593 hypothetical protein; 26.1 51 0.0011 36.2 2.7 37 246-285 86-122 (297)
108 smart00221 STYKc Protein kinas 25.9 2.7E+02 0.0059 27.1 7.5 62 246-315 70-134 (225)
109 cd05148 PTKc_Srm_Brk Catalytic 25.8 1.7E+02 0.0037 29.8 6.3 62 247-316 76-141 (261)
110 KOG0616 cAMP-dependent protein 25.5 35 0.00075 38.9 1.3 60 246-318 117-183 (355)
111 cd01528 RHOD_2 Member of the R 25.5 1.3E+02 0.0029 27.0 5.0 28 735-765 57-84 (101)
112 COG3173 Predicted aminoglycosi 24.7 1.6E+02 0.0034 33.6 6.3 110 137-294 26-141 (321)
113 cd06656 STKc_PAK3 Catalytic do 24.7 2.2E+02 0.0047 30.2 7.1 62 247-316 90-152 (297)
114 cd05041 PTKc_Fes_like Catalyti 24.6 1.6E+02 0.0035 29.7 5.9 62 247-316 66-130 (251)
115 cd07832 STKc_CCRK Catalytic do 24.0 2.5E+02 0.0055 28.9 7.2 61 246-316 72-136 (286)
116 PRK06849 hypothetical protein; 23.7 64 0.0014 36.4 3.0 69 187-259 121-198 (389)
117 cd01523 RHOD_Lact_B Member of 23.6 93 0.002 28.0 3.5 29 734-765 59-87 (100)
118 cd05608 STKc_GRK1 Catalytic do 23.3 2.6E+02 0.0057 29.3 7.3 16 247-262 67-82 (280)
119 TIGR02172 Fb_sc_TIGR02172 Fibr 23.2 2.4E+02 0.0052 29.8 7.0 36 168-203 24-62 (226)
120 KOG4445 Uncharacterized conser 22.9 88 0.0019 35.6 3.7 130 717-866 96-230 (368)
121 cd01448 TST_Repeat_1 Thiosulfa 22.4 1.1E+02 0.0024 28.4 3.9 30 734-765 77-106 (122)
122 cd06640 STKc_MST4 Catalytic do 22.3 3.3E+02 0.0073 28.2 7.8 18 247-264 76-93 (277)
123 cd08224 STKc_Nek6_Nek7 Catalyt 22.2 3.1E+02 0.0068 27.8 7.4 61 247-316 76-143 (267)
124 TIGR02721 ycfN_thiK thiamine k 22.1 60 0.0013 34.1 2.3 37 249-287 64-100 (256)
125 cd05599 STKc_NDR_like Catalyti 21.8 1.9E+02 0.0042 31.5 6.2 62 247-316 75-138 (364)
126 PF09419 PGP_phosphatase: Mito 21.3 2.8E+02 0.0062 28.8 6.8 73 654-748 13-90 (168)
127 cd05079 PTKc_Jak1_rpt2 Catalyt 21.0 3.7E+02 0.0081 28.0 7.8 17 247-263 82-98 (284)
128 TIGR03865 PQQ_CXXCW PQQ-depend 21.0 98 0.0021 31.4 3.4 29 735-765 115-143 (162)
129 COG0661 AarF Predicted unusual 20.9 45 0.00097 40.1 1.1 148 147-319 139-305 (517)
130 PF01807 zf-CHC2: CHC2 zinc fi 20.9 1E+02 0.0022 28.8 3.3 35 740-776 54-88 (97)
131 cd06612 STKc_MST1_2 Catalytic 20.8 3.9E+02 0.0084 26.9 7.7 63 246-316 71-136 (256)
132 cd01520 RHOD_YbbB Member of th 20.6 1.6E+02 0.0035 28.1 4.7 31 733-765 83-113 (128)
133 cd06650 PKc_MEK1 Catalytic dom 20.2 2.5E+02 0.0054 30.6 6.5 63 247-316 77-141 (333)
No 1
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes. It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.
Probab=100.00 E-value=1.6e-60 Score=502.66 Aligned_cols=246 Identities=46% Similarity=0.762 Sum_probs=164.8
Q ss_pred cchHHHhhccccccccccCcccccccccccccCCCCCCCcchHhhhcceEEEEecCceEEEEEecCCCCCCCCCCcceEE
Q 038745 91 ENSLWERLGKASMLDIESSLFSWDMLSSLHHTEHSSSTDQSEDELNKALEVTVNSGGVVFFALFNQPGSDDAPPKEAAAV 170 (881)
Q Consensus 91 ~~~l~~rl~~~~~~~i~~~~~~w~~l~s~~~~~~~~~~~~~~~~~~~~~~v~vnsgGvvf~~~f~~~~~~~~~~~e~a~V 170 (881)
++|||+|+++++++|+++++|+|++|++|||++|. |||||||||+.|+. .+++|||
T Consensus 2 ~~~~~~~~~~~~~~~~~i~~i~W~~l~sv~~s~~g-----------------~ns~gv~fv~~f~~-------~~~~avV 57 (275)
T PF09192_consen 2 EPSLWERLGNAAMPDSDISDIDWSSLSSVHHSEHG-----------------VNSGGVFFVATFSG-------SKEEAVV 57 (275)
T ss_dssp --------TTT--B-S-TT---TT-CCCEEEEEE------------------STTS-EEEEEETTE-----------EEE
T ss_pred cccHhhhhccccccccccccCCHHHhhhHHhhccc-----------------cCCCCEEEEEEcCC-------CceEEEE
Confidence 67999999999999999999999999999999998 99999999999987 6677999
Q ss_pred EeecCcchhhhhhHHHHHHHHHhCCCCCceeEEeccChhHHHHHHHHHHHHhhhcccCccccccchHHHHHHhhhccchh
Q 038745 171 IKFSSSRMATQSERLGYEFAKWLGVRTPQARVIHNCSSEWLQIKEAAEKARATATSEGDEIGEMTCSELLEALELSRCLF 250 (881)
Q Consensus 171 iK~~ssr~a~qsE~~~~ela~~lGv~~P~~Rvv~~~s~ew~~i~~a~~~~~~~~~~~~~~~~~~~c~e~le~l~~~~~ll 250 (881)
||++++ ||||+|||+||+||||+|||+||||++++||++|+++++. +...+++.++++|+|+.++ |||
T Consensus 58 iK~s~t---~~~E~~~s~La~~Lgv~~P~~Rii~~~~~E~~e~~~~l~~----a~~~~~~l~~~i~~el~~a-----~~l 125 (275)
T PF09192_consen 58 IKFSST---IQQEVFASELARWLGVPTPQMRIIESSSSEFQEMSEALLF----ATSNDDELGDFICSELDKA-----FFL 125 (275)
T ss_dssp EE--TT---HHHHHHHHHHHHHCT-----EEEEESSSHHHHHHHHHHH--------HH-SSS-HHHHHCT-S-----EEE
T ss_pred EecCCc---hHHHHHHHHHHHHhCCCCCceeeeecCCHHHHHHHHHHHh----hcccchHHHHHHHHHHHHH-----HHH
Confidence 999994 9999999999999999999999999999999999999993 3456788999999888654 699
Q ss_pred hhcccCCCCccCcccc--cccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccC--CCCCceeeecC-------ccch
Q 038745 251 LMSYVHGSPLLESSSA--FESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWR--GNPANLLLADK-------MASA 319 (881)
Q Consensus 251 ~M~yv~G~~l~~~~~~--f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~Wr--GN~~Nll~~~~-------~~~~ 319 (881)
+||||||++|.++..+ |.+++.+++++++||||++|||+|||+|||||++|+|| |||+||||+++ ....
T Consensus 126 iMeyv~G~~L~e~~~~~~f~~~~~~~~~~~~LG~ii~fDi~inN~DRlP~~~l~W~n~gN~~Nil~~~~p~~~~~~~i~~ 205 (275)
T PF09192_consen 126 IMEYVPGKPLNELNHKEYFSPEKSGEKRLEQLGRIIAFDIFINNFDRLPCRILNWRNEGNPSNILFYEKPNGWYFSLIDS 205 (275)
T ss_dssp EEE---EEESTT--SS--SHHHHS-HHHHHHHHHHHHHHHHHT--SSS----SSS-S---GGGEEEESB--TT-EEE-S-
T ss_pred HHHhcCCCCccccCcccccCCcchHHHHHHHHHhHHhhhhhhcCcccCcccccccCCCCChhheEEecccccceeeeccc
Confidence 9999999999999999 99999999999999999999999999999999999999 99999999999 4456
Q ss_pred hhhhHHHH-----HHHHhhhhhhHHHHHHHhhhhcccccccccCCCCCccccCCCCcccccCCCcccccccc
Q 038745 320 NMDAMEEA-----FDSAIKKYRPRVIRALQKERRTASVDSRVIPHSAGLVSEGSDLSDIIESPKSSELSRRS 386 (881)
Q Consensus 320 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (881)
++..++++ |+++|+||+|.+++.+| +++..++.. .++.|.++.+.+.+++..+
T Consensus 206 ~i~~i~~~~f~~~~~~~i~rv~~~l~~~~q-~~~~es~~~-------------~~~rd~i~~~~~~~l~~~s 263 (275)
T PF09192_consen 206 NITCIDNSSFTIGYDSYINRVKPLLFSIFQ-NPNTESKQL-------------SKMRDFIEKYTGYDLSSSS 263 (275)
T ss_dssp ------SS-------THHHHHHHHHHHHHH--TTS--HHH-------------HHHHHHHHHHHT---TTHH
T ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHh-CCCCchhhH-------------HHHHHHHhhccccCCChHH
Confidence 77777666 99999999999999999 777777763 3367778888777776443
No 2
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=100.00 E-value=1e-52 Score=433.78 Aligned_cols=209 Identities=33% Similarity=0.380 Sum_probs=195.8
Q ss_pred ceEEEEecCceEEEEEecCCCCCCCCCCcceEEEeecCcchhhhhhHHHHHHHHHhCCCCCceeEEeccChhHHHHHHHH
Q 038745 138 ALEVTVNSGGVVFFALFNQPGSDDAPPKEAAAVIKFSSSRMATQSERLGYEFAKWLGVRTPQARVIHNCSSEWLQIKEAA 217 (881)
Q Consensus 138 ~~~v~vnsgGvvf~~~f~~~~~~~~~~~e~a~ViK~~ssr~a~qsE~~~~ela~~lGv~~P~~Rvv~~~s~ew~~i~~a~ 217 (881)
.+||||||||+||||+|+.+++ +|+|||+++++ |+|+|||+||+||||.|||+||++++++||.+|.+++
T Consensus 1 ~ie~i~~s~s~~~~~~F~~s~~-------~a~ViK~s~ti---~~E~~~~~La~~LgVpiPq~rvi~~~~~E~~e~~~~L 70 (238)
T cd05124 1 QIKAIDLSDSGVFGALFVESES-------GAIVVKSSPNI---ASEYFLSKLAKILGLPIPQMRVLEWNSSEFTEMSENL 70 (238)
T ss_pred CceEEEecCCceEEEEEEcCCC-------cEEEEEcCccH---HHHHHHHHHHHHhCCCCCceeeeecCCHHHHHHHHHH
Confidence 4799999999999999998665 89999999955 8899999999999999999999999999999999999
Q ss_pred HHHHhhhcccCccccccchHHHHHHhhhcc-chhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhhhhhcCCCCC
Q 038745 218 EKARATATSEGDEIGEMTCSELLEALELSR-CLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLDLVIRNEDRL 296 (881)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~c~e~le~l~~~~-~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRl 296 (881)
+.++. +|+|.+.++++++.+ |||+||||||+||+++.++|+++.++++++++||+|++||++|||+|||
T Consensus 71 ~~a~~----------~~~~~~~~i~~el~~~~flimeYv~G~~l~~~~~~~~s~~~~~~~~~~LG~ii~lDi~inN~DRl 140 (238)
T cd05124 71 LKASS----------EDECLERRITLELEKAYLLIMEYVPGITLFKMTTHRASEYKGEERLIQLGKIIALDIFINNSDRL 140 (238)
T ss_pred HHHHh----------cchhHHHHHHHHHhhhheeeeeecCCccchhhccccccchhhHHHHHHhhhhheeeeeecCCCCC
Confidence 98888 689999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCceeeecCccc--hhhhhHHHHHHHHhhhhhhHHHHHHHhhhhcccccccccCCCCCccccCCCC
Q 038745 297 PCRQLRWRGNPANLLLADKMAS--ANMDAMEEAFDSAIKKYRPRVIRALQKERRTASVDSRVIPHSAGLVSEGSDL 370 (881)
Q Consensus 297 pc~~l~WrGN~~Nll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (881)
||++|+|+||++||||.+++.. .+.|.+++.++++ +|+|++|+++|+++|.+++++++. .|.+.++.+++
T Consensus 141 Pl~~~~~~GN~~Nil~~~~~~~~~~~~~~~d~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~--~~~l~s~~~~~ 212 (238)
T cd05124 141 PLAIWRNSGNFDNIILKDIPNKNGATEDLIDSNNTSL--NNHYETIRSLDRTLIAKPVDYSFE--SSQLRSMREIL 212 (238)
T ss_pred CccccccCCCcceEEEEcccCcCCCceeecccccccc--ccCcceeeeccccceecccccccc--CcchhhhHHHH
Confidence 9999999999999999999877 6789999999999 999999999999999999998665 56777665443
No 3
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=3.7e-33 Score=275.73 Aligned_cols=166 Identities=30% Similarity=0.421 Sum_probs=148.2
Q ss_pred CCCeeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHH
Q 038745 653 ERPSSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHV 732 (881)
Q Consensus 653 ~~PSEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdea 732 (881)
...++|.+.|||++-.+|.++..|+++|||+|||++.+ . ++..-.+++|..+|+.|.+...|.+||+.+.+.|+..
T Consensus 15 ~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E-~---pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v 90 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTE-V---PNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSV 90 (198)
T ss_pred cchhhcCcceeEeccccccCHHHHHhcCceEEEEcccC-C---CCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHH
Confidence 34679999999998889999999999999999999765 2 2334457899999999999999999999999999999
Q ss_pred HHcCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcCCccceeeeccCC-
Q 038745 733 EQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKLHGEVSMEWQQRKPM- 811 (881)
Q Consensus 733 l~~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEkkL~gk~Svew~q~kP~- 811 (881)
...||++||||.+|+||||++|+|||||+.+|++.||+.|+|.+||+|+||-||++||+.||++|+|+.+|...+..-.
T Consensus 91 ~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~sV~MV~~p~~d 170 (198)
T KOG1718|consen 91 IMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNASVRMVQTPVGD 170 (198)
T ss_pred HhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCCeEEEEeccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988764321
Q ss_pred cccCCccCCCC
Q 038745 812 MKVCPICGKNA 822 (881)
Q Consensus 812 ~~vCpic~k~~ 822 (881)
...++++.+..
T Consensus 171 ~~iPDvye~e~ 181 (198)
T KOG1718|consen 171 QLIPDVYEKEA 181 (198)
T ss_pred ccCchhhcccc
Confidence 24556676654
No 4
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=2.7e-30 Score=243.59 Aligned_cols=138 Identities=41% Similarity=0.641 Sum_probs=129.0
Q ss_pred CeeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHHHH
Q 038745 655 PSSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQ 734 (881)
Q Consensus 655 PSEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal~ 734 (881)
|++|.|+||+|+..++.+.+.|+++||++|||++.+.. ...+.++.|+++|+.|....++...|+.+++||+.++.
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~----~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~ 76 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP----NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEK 76 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC----CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999976532 22356789999999998888999999999999999999
Q ss_pred cCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHH
Q 038745 735 TGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRK 796 (881)
Q Consensus 735 ~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEkk 796 (881)
.|++|||||.+|+|||+++++||||+.++|++++|+++|+++||.+.||.+|++||++||++
T Consensus 77 ~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 77 KGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999973
No 5
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=4.6e-30 Score=273.23 Aligned_cols=151 Identities=35% Similarity=0.518 Sum_probs=136.6
Q ss_pred CCCeeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHH
Q 038745 653 ERPSSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHV 732 (881)
Q Consensus 653 ~~PSEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdea 732 (881)
..+++|.|+||+|+..++.+...|+++||+||||+..... ........++.|++|++.|.+..+|..||+++++||+.+
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~-~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a 151 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCP-NPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKA 151 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCC-ccccccccCceEEeccccCCccccHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999965421 111123347899999999999999999999999999999
Q ss_pred HHcCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcCCccce
Q 038745 733 EQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKLHGEVSME 804 (881)
Q Consensus 733 l~~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEkkL~gk~Sve 804 (881)
+..||+|||||.+|+|||+|++|||||++++|++++|+.+||++||+|.||.||+.||++||+.+..+....
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999998766543
No 6
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=3.4e-30 Score=268.89 Aligned_cols=144 Identities=35% Similarity=0.557 Sum_probs=133.6
Q ss_pred CCCCCeeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCCC--CCceEEeeecCCCCCCcHHHHHHHHHHH
Q 038745 651 NTERPSSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFP--DLFKYKNFSISDNEDTNISSIFEEASDF 728 (881)
Q Consensus 651 ~t~~PSEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~p--~gf~Yl~IPV~Ds~~edI~~~FdeA~eF 728 (881)
+...|.+|+|+||||+..++.|.+.|+++||+|||||+.+. ++.|. +.|.|+.||+.|....++.++|++|+.|
T Consensus 168 ra~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl----pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsf 243 (343)
T KOG1717|consen 168 RASFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL----PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISF 243 (343)
T ss_pred ccCcchhhccchhcccccccccHHHHHhcCceEEEecCCCC----cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHH
Confidence 34568999999999999999999999999999999997652 33333 3589999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhc
Q 038745 729 IDHVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKLH 798 (881)
Q Consensus 729 Ideal~~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEkkL~ 798 (881)
|++++.++..|||||.+|||||+|+++||||++..+++.+||++||.++..|.||++||.||..||+.|.
T Consensus 244 IdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlg 313 (343)
T KOG1717|consen 244 IDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLG 313 (343)
T ss_pred HHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874
No 7
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=1.9e-28 Score=228.99 Aligned_cols=133 Identities=32% Similarity=0.528 Sum_probs=121.9
Q ss_pred eEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHHHHcCCeEEE
Q 038745 662 LFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLV 741 (881)
Q Consensus 662 LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal~~GGkVLV 741 (881)
||||+..++. ...|+++||++|||++.+.... ......++.|+++|+.|....++..+|+.+++||+.+...|++|||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~-~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlV 78 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP-YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLV 78 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS-HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc-hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEE
Confidence 7999999999 9999999999999997642210 1123567899999999999999999999999999999999999999
Q ss_pred EcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHH
Q 038745 742 HCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRK 796 (881)
Q Consensus 742 HC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEkk 796 (881)
||.+|+|||+++++||||+.++|++++|+++|+++||.+.||.+|++||.+||++
T Consensus 79 HC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 79 HCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp EESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred EeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999975
No 8
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=1.2e-27 Score=223.90 Aligned_cols=138 Identities=41% Similarity=0.617 Sum_probs=128.1
Q ss_pred CeeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHHHH
Q 038745 655 PSSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQ 734 (881)
Q Consensus 655 PSEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal~ 734 (881)
+++|.|+||+|+..++.+.+.|+++||++|||++..... ......++.|+++|+.|.+..++...++.+++||+..+.
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~ 79 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN--ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDARE 79 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC--cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999875432 233456789999999999888899999999999999999
Q ss_pred cCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHH
Q 038745 735 TGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELD 794 (881)
Q Consensus 735 ~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyE 794 (881)
.+++|||||.+|+|||+++++||||++++|++++|+++||++||.+.||.+|++||.+||
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999996
No 9
>PRK12361 hypothetical protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=238.67 Aligned_cols=143 Identities=24% Similarity=0.332 Sum_probs=125.7
Q ss_pred CCeeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHHH
Q 038745 654 RPSSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVE 733 (881)
Q Consensus 654 ~PSEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal 733 (881)
.+++|.|+||||+...+.+.+.|+++||++|||++.+...........++.|+++|+.|...+.+ ++|+++++||++++
T Consensus 94 ~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~~ 172 (547)
T PRK12361 94 AIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQV 172 (547)
T ss_pred cceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999997542211122345678999999999876654 77999999999999
Q ss_pred HcCCeEEEEcCCCCcchHHHHHHHHHHh-cCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHh
Q 038745 734 QTGGRVLVHCFEGRSRSATLVLAYLMLR-KNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKL 797 (881)
Q Consensus 734 ~~GGkVLVHC~aGISRSATVVIAYLMk~-~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEkkL 797 (881)
++|++|||||.+|+|||+++++||||++ +++++++|+++||++||.+.||++++++|.+|++..
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999977 589999999999999999999999999999998763
No 10
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.77 E-value=5e-18 Score=168.90 Aligned_cols=126 Identities=15% Similarity=0.240 Sum_probs=101.0
Q ss_pred cCHHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHHHHc----CCeEEEEcCCC
Q 038745 671 RSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQT----GGRVLVHCFEG 746 (881)
Q Consensus 671 ~n~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal~~----GGkVLVHC~aG 746 (881)
.+...|+++||++||+++.... ........++.|+++|++|...+.. ..+...++|++..+.. |++|+|||.+|
T Consensus 31 ~~l~~L~~~gI~~Iv~l~~~~~-~~~~~~~~gi~~~~~p~~D~~~P~~-~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aG 108 (166)
T PTZ00242 31 LYIKELQRYNVTHLVRVCGPTY-DAELLEKNGIEVHDWPFDDGAPPPK-AVIDNWLRLLDQEFAKQSTPPETIAVHCVAG 108 (166)
T ss_pred HHHHHHHhCCCeEEEecCCCCC-CHHHHHHCCCEEEecCCCCCCCCCH-HHHHHHHHHHHHHHHhhccCCCeEEEECCCC
Confidence 3468899999999999975422 1112223478999999998654433 3456667777776654 99999999999
Q ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcC
Q 038745 747 RSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKLHG 799 (881)
Q Consensus 747 ISRSATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEkkL~g 799 (881)
+|||++++++|||++.++++++|+.+|+++||.+ +|..++.+|.+|++.+..
T Consensus 109 igRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~ 160 (166)
T PTZ00242 109 LGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKA 160 (166)
T ss_pred CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999975 479999999999987653
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.73 E-value=2.3e-17 Score=172.75 Aligned_cols=127 Identities=15% Similarity=0.227 Sum_probs=107.2
Q ss_pred cCHHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcch
Q 038745 671 RSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHCFEGRSRS 750 (881)
Q Consensus 671 ~n~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal~~GGkVLVHC~aGISRS 750 (881)
.+.+.|+++||++||++|+... ....+...++.++++|++|...+.. ..+++.+++|+..+..|++|+|||.+|+|||
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Y-d~~~~~~~GI~~~~lpipDg~aPs~-~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRT 184 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTY-NDGEITSAGINVHELIFPDGDAPTV-DIVSNWLTIVNNVIKNNRAVAVHCVAGLGRA 184 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCC-CHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEECCCCCCHH
Confidence 5678999999999999986432 2223345689999999999766554 4567788899988889999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcCCc
Q 038745 751 ATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKLHGEV 801 (881)
Q Consensus 751 ATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEkkL~gk~ 801 (881)
+++++||||. +||++++|+++||++||.+ +|..+++.|.+|+++..++.
T Consensus 185 Gtl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k~~ 233 (241)
T PTZ00393 185 PVLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKKKN 233 (241)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccccc
Confidence 9999999997 7999999999999999977 58999999999999875443
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.73 E-value=2.7e-17 Score=168.42 Aligned_cols=162 Identities=22% Similarity=0.249 Sum_probs=119.5
Q ss_pred CCcccccCCcchhhhHHHHHHHHHHHhhhhccccCCCCCeeeeCCeEECChh---hh-------------cCHHHHHHcC
Q 038745 617 TGFFEGSDGVVDAYELKVRLEHILERITLISEAANTERPSSITSSLFIGGAL---AA-------------RSVYTLKHLG 680 (881)
Q Consensus 617 Tgfle~~d~~~daYE~k~rLe~ILerfsli~~~~~t~~PSEIlP~LYLGs~~---aA-------------~n~e~LK~lG 680 (881)
.|++++..++++.||..++++ ..+-+||.|+.+++-.. .+ .-+..+++++
T Consensus 29 ~g~l~~~~~~~~~ye~ye~ve--------------~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~ 94 (225)
T KOG1720|consen 29 SGWLDFSSFNVDEYEHYEAVE--------------NGDFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNN 94 (225)
T ss_pred ccccchheecchhheeeeccC--------------CCCcceeccchhhhhcCccccccchhhcccccCChhHHHHhhhcc
Confidence 488999999999999887766 33344555543333221 11 1345778999
Q ss_pred ceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHH
Q 038745 681 ITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHCFEGRSRSATLVLAYLML 760 (881)
Q Consensus 681 IThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal~~GGkVLVHC~aGISRSATVVIAYLMk 760 (881)
++.|+.+. +..++...+.+.+|.++++++.|...+++.. ..+.++..+.+++ ||+|+|||++|.+||+++++||||+
T Consensus 95 v~s~vrln-~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~-v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lmy 171 (225)
T KOG1720|consen 95 VTSIVRLN-KRLYDAKRFTDAGIDHHDLFFADGSTPTDAI-VKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLMY 171 (225)
T ss_pred cceEEEcC-CCCCChHHhcccCceeeeeecCCCCCCCHHH-HHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHHH
Confidence 99999884 4455555677788999999999987766643 3445555556666 8999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Q 038745 761 RKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDR 795 (881)
Q Consensus 761 ~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEk 795 (881)
.++||..||+++||.+||-+-..+.....|.++..
T Consensus 172 ~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 172 EYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 99999999999999999965444444445555544
No 13
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.72 E-value=3.5e-17 Score=161.11 Aligned_cols=145 Identities=21% Similarity=0.255 Sum_probs=118.8
Q ss_pred eeeCCeEECChhh-hcCHHHHHHcCceEEEEeeccCcCCCC-CC-CCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHHH
Q 038745 657 SITSSLFIGGALA-ARSVYTLKHLGITHILCLCANEIGQSD-SQ-FPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVE 733 (881)
Q Consensus 657 EIlP~LYLGs~~a-A~n~e~LK~lGIThVLNV~seei~~~~-~~-~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal 733 (881)
+|..++.+|-..- ..+...++++|+..|+.+..+...... +. ...+++++.||..|.....-...+.++++||+...
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA 106 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc
Confidence 4556666665532 367789999999999988543221111 11 12368999999999776666666788999999999
Q ss_pred HcCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhcCCc
Q 038745 734 QTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKLHGEV 801 (881)
Q Consensus 734 ~~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEkkL~gk~ 801 (881)
..|+.|+|||++|.+||+|+|+||||++++|+.++|+++|+++||.|-..++.++.|.+|...+-...
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~~~ 174 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVANA 174 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999876544
No 14
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.53 E-value=4e-14 Score=142.21 Aligned_cols=99 Identities=26% Similarity=0.340 Sum_probs=81.1
Q ss_pred CCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhcC-CCHHHHHHHHHHh
Q 038745 698 QFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKN-FTLLQAWNTLKRV 776 (881)
Q Consensus 698 ~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal~~GGkVLVHC~aGISRSATVVIAYLMk~~g-mSLeEAl~~VKk~ 776 (881)
..+.++.++++|+.|....++ ..++++++||+.++.+|++|+|||.+|+|||+|+++||||++.+ +..++|+.+++.+
T Consensus 68 ~~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~ 146 (180)
T COG2453 68 EENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRR 146 (180)
T ss_pred eccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 345678999999999999888 66899999999999999999999999999999999999999965 5566666666665
Q ss_pred CCCccCCHHHHHHHHHHHHHhcC
Q 038745 777 HRRAQPNDGFAKILLELDRKLHG 799 (881)
Q Consensus 777 RP~I~PN~GF~kQLleyEkkL~g 799 (881)
|+. ++....+++..|+..+..
T Consensus 147 r~~--~v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 147 RPG--AVVTEIQHLFELEQELFR 167 (180)
T ss_pred CCc--ccccHHHHHHHHHHHHHH
Confidence 555 676666776666665543
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.01 E-value=3.7e-09 Score=102.14 Aligned_cols=118 Identities=13% Similarity=0.164 Sum_probs=83.8
Q ss_pred eeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCc-CCCCCC-------CCCCceEEeeecCCCCCCcHHHHHHHHHH
Q 038745 656 SSITSSLFIGGALAARSVYTLKHLGITHILCLCANEI-GQSDSQ-------FPDLFKYKNFSISDNEDTNISSIFEEASD 727 (881)
Q Consensus 656 SEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei-~~~~~~-------~p~gf~Yl~IPV~Ds~~edI~~~FdeA~e 727 (881)
.+|.+.+|+++.....+...|+++||+.|||+..... ...+.. ...++.|+++|+..... .. +.+..
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~---~~--~~v~~ 77 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI---TP--DDVET 77 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC---CH--HHHHH
Confidence 4788999999999999999999999999999975422 111111 12478999999875321 11 11223
Q ss_pred HHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCc
Q 038745 728 FIDHVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRA 780 (881)
Q Consensus 728 FIdeal~~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk~RP~I 780 (881)
|.+......++||+||..|. |++.+.+.++ ...|++.+++++..+..-..+
T Consensus 78 f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~~-~~~g~~~~~i~~~~~~~G~~~ 128 (135)
T TIGR01244 78 FRAAIGAAEGPVLAYCRSGT-RSSLLWGFRQ-AAEGVPVEEIVRRAQAAGYDL 128 (135)
T ss_pred HHHHHHhCCCCEEEEcCCCh-HHHHHHHHHH-HHcCCCHHHHHHHHHHcCCCc
Confidence 33322244689999999999 9877765555 458999999999998754433
No 16
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=98.99 E-value=5.1e-10 Score=111.92 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=74.8
Q ss_pred CeeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCC--CCCceEEeeecCCCCC--CcH-HHHHHHHHHHH
Q 038745 655 PSSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQF--PDLFKYKNFSISDNED--TNI-SSIFEEASDFI 729 (881)
Q Consensus 655 PSEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~--p~gf~Yl~IPV~Ds~~--edI-~~~FdeA~eFI 729 (881)
-..|.++||-|++..+.+..+|+++||++||+++.++.......+ ..++++.++++..... ..+ .+.+.++++.|
T Consensus 7 F~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i 86 (164)
T PF03162_consen 7 FGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII 86 (164)
T ss_dssp -EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH
T ss_pred ccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH
Confidence 467999999999999999999999999999999865332111111 3568999999876543 122 33455566655
Q ss_pred HHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 038745 730 DHVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKR 775 (881)
Q Consensus 730 deal~~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk 775 (881)
.+. .+..|||||..|..|++++|++|= +..||++..|++..+.
T Consensus 87 ld~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 87 LDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp H-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred hCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 433 357999999999999999999988 7899999999998764
No 17
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=98.92 E-value=1.4e-09 Score=109.48 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=62.8
Q ss_pred hcCHHHHHHcCceEEEEeeccCc---CCCCC----CCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHHHHcCCeEEEE
Q 038745 670 ARSVYTLKHLGITHILCLCANEI---GQSDS----QFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVH 742 (881)
Q Consensus 670 A~n~e~LK~lGIThVLNV~seei---~~~~~----~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal~~GGkVLVH 742 (881)
..|.+.|++.||+.||.+++... ..... ....++.++|+||.|...+++... .++++.|...+++|++|+||
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~-~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAA-WQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHH-HHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHH-HHHHHHHHHHHHcCCEEEEE
Confidence 34677899999999999876421 00010 112468999999999988887554 46778888999999999999
Q ss_pred cCCCCcchHHHHHHHHHHhc-CCCHHHHH
Q 038745 743 CFEGRSRSATLVLAYLMLRK-NFTLLQAW 770 (881)
Q Consensus 743 C~aGISRSATVVIAYLMk~~-gmSLeEAl 770 (881)
|..|++||+++++++|+... .++.++|+
T Consensus 140 C~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 140 CRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 99999999999988888765 48888885
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.80 E-value=5.4e-08 Score=86.10 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=59.5
Q ss_pred eeecCCCCCCcHHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCcchHHHHHHHHHHhc------CCCHHHHHHHHHHhC
Q 038745 707 NFSISDNEDTNISSIFEEASDFIDHVEQ---TGGRVLVHCFEGRSRSATLVLAYLMLRK------NFTLLQAWNTLKRVH 777 (881)
Q Consensus 707 ~IPV~Ds~~edI~~~FdeA~eFIdeal~---~GGkVLVHC~aGISRSATVVIAYLMk~~------gmSLeEAl~~VKk~R 777 (881)
+...+|...++....|...++.++.... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|..|
T Consensus 7 ~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r 86 (105)
T smart00404 7 YTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQR 86 (105)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhh
Confidence 3344444333333444444555544443 3689999999999999999999999763 378999999999999
Q ss_pred CCccCCHHHHHHH
Q 038745 778 RRAQPNDGFAKIL 790 (881)
Q Consensus 778 P~I~PN~GF~kQL 790 (881)
+....+.....-+
T Consensus 87 ~~~~~~~~q~~~~ 99 (105)
T smart00404 87 PGMVQTFEQYLFL 99 (105)
T ss_pred hhhCCcHHHHHHH
Confidence 9877776655544
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.80 E-value=5.4e-08 Score=86.10 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=59.5
Q ss_pred eeecCCCCCCcHHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCcchHHHHHHHHHHhc------CCCHHHHHHHHHHhC
Q 038745 707 NFSISDNEDTNISSIFEEASDFIDHVEQ---TGGRVLVHCFEGRSRSATLVLAYLMLRK------NFTLLQAWNTLKRVH 777 (881)
Q Consensus 707 ~IPV~Ds~~edI~~~FdeA~eFIdeal~---~GGkVLVHC~aGISRSATVVIAYLMk~~------gmSLeEAl~~VKk~R 777 (881)
+...+|...++....|...++.++.... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|..|
T Consensus 7 ~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r 86 (105)
T smart00012 7 YTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQR 86 (105)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhh
Confidence 3344444333333444444555544443 3689999999999999999999999763 378999999999999
Q ss_pred CCccCCHHHHHHH
Q 038745 778 RRAQPNDGFAKIL 790 (881)
Q Consensus 778 P~I~PN~GF~kQL 790 (881)
+....+.....-+
T Consensus 87 ~~~~~~~~q~~~~ 99 (105)
T smart00012 87 PGMVQTFEQYLFL 99 (105)
T ss_pred hhhCCcHHHHHHH
Confidence 9877776655544
No 20
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.78 E-value=7.5e-08 Score=94.16 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=82.0
Q ss_pred CHHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCC--cHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcc
Q 038745 672 SVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDT--NISSIFEEASDFIDHVEQTGGRVLVHCFEGRSR 749 (881)
Q Consensus 672 n~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~e--dI~~~FdeA~eFIdeal~~GGkVLVHC~aGISR 749 (881)
-++.|+++|+|+|+.||+..+ +......+++..+..+.+|.... .+.+.+-..+. ..-....|..|.|||.+|++|
T Consensus 33 fieELkKygvttvVRVCe~TY-dt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~-~~f~e~p~~cvavhcvaglgr 110 (173)
T KOG2836|consen 33 FIEELKKYGVTTVVRVCEPTY-DTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVK-TKFREEPGCCVAVHCVAGLGR 110 (173)
T ss_pred HHHHHHhcCCeEEEEeccccc-CCchhhhcCceEeecccccCCCCchHHHHHHHHHHH-HHHhhCCCCeEEEEeecccCc
Confidence 468899999999999997533 23334457889999999986332 23322222221 122234578999999999999
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHH
Q 038745 750 SATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDR 795 (881)
Q Consensus 750 SATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEk 795 (881)
.+.+|+.-|+ ..||.+++|++++|++|+-+ .|. +||.-+|+
T Consensus 111 apvlvalali-e~gmkyedave~ir~krrga-~n~---kql~~lek 151 (173)
T KOG2836|consen 111 APVLVALALI-EAGMKYEDAVEMIRQKRRGA-INS---KQLLYLEK 151 (173)
T ss_pred chHHHHHHHH-HccccHHHHHHHHHHHhhcc-ccH---HHHHHHHH
Confidence 9998877775 78999999999999988753 343 45544444
No 21
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.50 E-value=3.4e-07 Score=86.66 Aligned_cols=93 Identities=20% Similarity=0.349 Sum_probs=55.4
Q ss_pred eeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCC--------CCCceEEeeecCCCCCCcHHHHHHHHHH
Q 038745 656 SSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQF--------PDLFKYKNFSISDNEDTNISSIFEEASD 727 (881)
Q Consensus 656 SEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~--------p~gf~Yl~IPV~Ds~~edI~~~FdeA~e 727 (881)
.+|.+.+|++++....+...|++.|+++|||++........... ..++.|+++||.-.. +.. +.+..
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~---~~~--~~v~~ 77 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA---ITE--EDVEA 77 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-----H--HHHHH
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC---CCH--HHHHH
Confidence 57899999999999999999999999999999754221111111 247899999998532 221 34445
Q ss_pred HHHHHHHcCCeEEEEcCCCCcchHHHH
Q 038745 728 FIDHVEQTGGRVLVHCFEGRSRSATLV 754 (881)
Q Consensus 728 FIdeal~~GGkVLVHC~aGISRSATVV 754 (881)
|.+......++||+||..|. ||.++.
T Consensus 78 f~~~l~~~~~Pvl~hC~sG~-Ra~~l~ 103 (110)
T PF04273_consen 78 FADALESLPKPVLAHCRSGT-RASALW 103 (110)
T ss_dssp HHHHHHTTTTSEEEE-SCSH-HHHHHH
T ss_pred HHHHHHhCCCCEEEECCCCh-hHHHHH
Confidence 55544455789999999997 886653
No 22
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.45 E-value=9.9e-07 Score=87.93 Aligned_cols=116 Identities=23% Similarity=0.255 Sum_probs=82.5
Q ss_pred HHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCC------CcHHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 038745 673 VYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNED------TNISSIFEEASDFIDHVEQTGGRVLVHCFEG 746 (881)
Q Consensus 673 ~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~------edI~~~FdeA~eFIdeal~~GGkVLVHC~aG 746 (881)
.+.-.++|-|++|++............-..-.++.+.+.|... ..-..|.+.+++|+++.-+ ....||||.+|
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~-~apllIHC~aG 103 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPR-FAPLLIHCYAG 103 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCcc-ccceeeeeccc
Confidence 3455578899999987642222211111223566666665332 2335778999999998865 47899999999
Q ss_pred CcchHHHHH-HHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHH
Q 038745 747 RSRSATLVL-AYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKI 789 (881)
Q Consensus 747 ISRSATVVI-AYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQ 789 (881)
||||+++++ |-|.....+.-.+..+.++..+|.+.||+..+.-
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHH
Confidence 999976543 4456677899999999999999999999987653
No 23
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.34 E-value=2.1e-06 Score=88.27 Aligned_cols=55 Identities=20% Similarity=0.385 Sum_probs=47.3
Q ss_pred CCeEEEEcCCCCcchHHHHHHHHHHhc-----CCCHHHHHHHHHHhCCCccCCHHHHHHH
Q 038745 736 GGRVLVHCFEGRSRSATLVLAYLMLRK-----NFTLLQAWNTLKRVHRRAQPNDGFAKIL 790 (881)
Q Consensus 736 GGkVLVHC~aGISRSATVVIAYLMk~~-----gmSLeEAl~~VKk~RP~I~PN~GF~kQL 790 (881)
+++|+|||.+|+|||+++++++++... .+++.+|+..+|+.|+.+-.+.....-+
T Consensus 166 ~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~ 225 (231)
T cd00047 166 SGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFL 225 (231)
T ss_pred CCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 789999999999999999999987653 5899999999999999877776655544
No 24
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.22 E-value=6.7e-06 Score=86.26 Aligned_cols=55 Identities=20% Similarity=0.383 Sum_probs=47.8
Q ss_pred CCeEEEEcCCCCcchHHHHHHHHHHh-----cCCCHHHHHHHHHHhCCCccCCHHHHHHH
Q 038745 736 GGRVLVHCFEGRSRSATLVLAYLMLR-----KNFTLLQAWNTLKRVHRRAQPNDGFAKIL 790 (881)
Q Consensus 736 GGkVLVHC~aGISRSATVVIAYLMk~-----~gmSLeEAl~~VKk~RP~I~PN~GF~kQL 790 (881)
+++|+|||.+|+|||+++|++++|.. ..+++.+++..||..|+.+-.+..+..-+
T Consensus 193 ~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~ 252 (258)
T smart00194 193 TGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFL 252 (258)
T ss_pred CCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 78999999999999999999998743 35899999999999999888887766554
No 25
>PLN02727 NAD kinase
Probab=98.20 E-value=5.2e-06 Score=100.78 Aligned_cols=103 Identities=13% Similarity=0.188 Sum_probs=75.1
Q ss_pred eCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCC--------CCCceEEeeecCCCCCCcHHHHHHHHHHHHH
Q 038745 659 TSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQF--------PDLFKYKNFSISDNEDTNISSIFEEASDFID 730 (881)
Q Consensus 659 lP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~--------p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFId 730 (881)
.-.+|.+++....+.+.|.+.||++|||++.+.... .... ..+++|++|||.+.....-. .++++.++++
T Consensus 260 ~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~-q~~~~ee~eAae~~GL~yVhIPVs~~~apt~E-qVe~fa~~l~ 337 (986)
T PLN02727 260 EAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKD-NFYQAAVDDAISSGKIEVVKIPVEVRTAPSAE-QVEKFASLVS 337 (986)
T ss_pred eeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCC-CchhHHHHHHHHHcCCeEEEeecCCCCCCCHH-HHHHHHHHHH
Confidence 446899999999999999999999999997654321 1111 14789999999764433221 1233344442
Q ss_pred HHHHcCCeEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 038745 731 HVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFT 765 (881)
Q Consensus 731 eal~~GGkVLVHC~aGISRSATVVIAYLMk~~gmS 765 (881)
+ ...++||+||..|..|+++++++|+.+.-+-.
T Consensus 338 ~--slpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 338 D--SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred h--hcCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 2 35789999999999999999999998776643
No 26
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.07 E-value=7.2e-06 Score=81.09 Aligned_cols=113 Identities=21% Similarity=0.337 Sum_probs=56.1
Q ss_pred eeC-CeEECChhh---hcCHHHHHHcCceEEEEeeccCc-CCCCCCCCCCceEEeeecCCCCCCc---HH----------
Q 038745 658 ITS-SLFIGGALA---ARSVYTLKHLGITHILCLCANEI-GQSDSQFPDLFKYKNFSISDNEDTN---IS---------- 719 (881)
Q Consensus 658 IlP-~LYLGs~~a---A~n~e~LK~lGIThVLNV~seei-~~~~~~~p~gf~Yl~IPV~Ds~~ed---I~---------- 719 (881)
|.+ .||=++... ..+...|+++||++||++..... ...+.....++.|+++|+.+..... +.
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAP 95 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchh
Confidence 444 477776644 44677899999999999965421 1112334568899999997654441 11
Q ss_pred HHH------------HHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHH
Q 038745 720 SIF------------EEASDFIDHVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWN 771 (881)
Q Consensus 720 ~~F------------deA~eFIdeal~~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~ 771 (881)
.++ +...++++......+.|||||.+|.-|++. ++|.|+...|.+.++.++
T Consensus 96 ~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~-~~alll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 96 RGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGV-VAALLLSLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHH-HHHHHHHHTT--HHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHH-HHHHHHHHcCCCHHHHHH
Confidence 111 111112222223457999999999999965 556666788998887765
No 27
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=97.96 E-value=4.2e-05 Score=88.44 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=54.8
Q ss_pred eEEEEcCCCCcchHHHHHHHHHHhcC-CCHHHHHHHHHHhCCC-ccCCHHHHHHHHHHHHHhc
Q 038745 738 RVLVHCFEGRSRSATLVLAYLMLRKN-FTLLQAWNTLKRVHRR-AQPNDGFAKILLELDRKLH 798 (881)
Q Consensus 738 kVLVHC~aGISRSATVVIAYLMk~~g-mSLeEAl~~VKk~RP~-I~PN~GF~kQLleyEkkL~ 798 (881)
.++|||.+|++||+|+|++|+|+..+ .++++.+.-+|..|+. +--+..++..|.++..+|.
T Consensus 468 ~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 468 LPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred CceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHh
Confidence 35799999999999999999998654 7999999999999997 8889999999999888775
No 28
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=97.81 E-value=6e-05 Score=86.27 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=101.7
Q ss_pred HHHHHHhhhhccccCCCCCeeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCC
Q 038745 637 EHILERITLISEAANTERPSSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDT 716 (881)
Q Consensus 637 e~ILerfsli~~~~~t~~PSEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~e 716 (881)
.||.+|+.++ ..|.+..+.+|-.+..+....-.-+..|-=.|.|+|.+..+....+.. +...++.+|...+
T Consensus 16 tYIT~rIIam------sfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g---~V~~~~~~Dh~~P 86 (434)
T KOG2283|consen 16 TYITSRIIAM------SFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHG---RVARFGFDDHNPP 86 (434)
T ss_pred eeeeeeEEEE------eCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCcccccc---ceeecCCCCCCCC
Confidence 4566665544 356776677999888877333222233444478998643332222222 3455788888777
Q ss_pred cHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCcchHHHHHHHHHHhcCCC-HHHHHHHHHHhC---C--CccCCHHHHH
Q 038745 717 NISSIFEEASDFIDHVEQT--GGRVLVHCFEGRSRSATLVLAYLMLRKNFT-LLQAWNTLKRVH---R--RAQPNDGFAK 788 (881)
Q Consensus 717 dI~~~FdeA~eFIdeal~~--GGkVLVHC~aGISRSATVVIAYLMk~~gmS-LeEAl~~VKk~R---P--~I~PN~GF~k 788 (881)
.|.. +..+|+=++..+.. ...|.|||++|.+|++++|+||||+..-+. .++|+.+.-.+| . ...--+...+
T Consensus 87 ~L~~-l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~R 165 (434)
T KOG2283|consen 87 PLEL-LCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRR 165 (434)
T ss_pred cHHH-HHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhH
Confidence 6644 45567767776654 478999999999999999999999887765 999999998888 3 2333556777
Q ss_pred HHHHHHH
Q 038745 789 ILLELDR 795 (881)
Q Consensus 789 QLleyEk 795 (881)
.+.-|+.
T Consensus 166 Yv~Y~~~ 172 (434)
T KOG2283|consen 166 YVGYFSR 172 (434)
T ss_pred HHHHHHH
Confidence 7777777
No 29
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=97.67 E-value=0.00014 Score=77.22 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=87.8
Q ss_pred eeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCC-CCC-CCCceEEeeecCC------CCCCcHHH-HHHHHH
Q 038745 656 SSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSD-SQF-PDLFKYKNFSISD------NEDTNISS-IFEEAS 726 (881)
Q Consensus 656 SEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~-~~~-p~gf~Yl~IPV~D------s~~edI~~-~FdeA~ 726 (881)
+-|.++||-+++....|..+|+.++++.||.+|.++.+... .++ ..++++.+|.++- .+..++.+ .+..++
T Consensus 61 s~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l 140 (249)
T KOG1572|consen 61 SMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKAL 140 (249)
T ss_pred cccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHH
Confidence 45778999999999999999999999999999987543322 122 3468999998863 33344443 366777
Q ss_pred HHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 038745 727 DFIDHVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKR 775 (881)
Q Consensus 727 eFIdeal~~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk 775 (881)
+++-+ ..+-.+||||..|..|++++|.+.= +-.+|++.-.++..+.
T Consensus 141 ~~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~ 186 (249)
T KOG1572|consen 141 KVLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLR 186 (249)
T ss_pred HHHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHH
Confidence 77443 3467999999999999988766654 7889999888876554
No 30
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.64 E-value=0.00033 Score=67.93 Aligned_cols=112 Identities=18% Similarity=0.286 Sum_probs=76.0
Q ss_pred eeeeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCC--------CCCceEEeeecCC-CCCCcHHHHHHHHH
Q 038745 656 SSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQF--------PDLFKYKNFSISD-NEDTNISSIFEEAS 726 (881)
Q Consensus 656 SEIlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~--------p~gf~Yl~IPV~D-s~~edI~~~FdeA~ 726 (881)
.+|.+.|+++++....+...++.+|++.|||..........+.+ ..++.|.+|||.- ...++-...|..++
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al 83 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRAL 83 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999999998654322111111 1367999999975 33333333333333
Q ss_pred HHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHH
Q 038745 727 DFIDHVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKR 775 (881)
Q Consensus 727 eFIdeal~~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk 775 (881)
-+.+|.||.||..| .||-++ -+.--...||+.+++.++=+.
T Consensus 84 ------~eaegPVlayCrsG-tRs~~l-y~~~~~~~gm~~de~~a~g~a 124 (130)
T COG3453 84 ------DEAEGPVLAYCRSG-TRSLNL-YGLGELDGGMSRDEIEALGQA 124 (130)
T ss_pred ------HHhCCCEEeeecCC-chHHHH-HHHHHHhcCCCHHHHHHHHHh
Confidence 34589999999999 476433 222224568999888776554
No 31
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.54 E-value=0.00042 Score=70.14 Aligned_cols=66 Identities=21% Similarity=0.383 Sum_probs=52.0
Q ss_pred HHHHHHHHHH----cCCeEEEEcCCCCcchHHHHHHHHHHh-----cCCCHHHHHHHHHHhCCCccCCHHHHHHH
Q 038745 725 ASDFIDHVEQ----TGGRVLVHCFEGRSRSATLVLAYLMLR-----KNFTLLQAWNTLKRVHRRAQPNDGFAKIL 790 (881)
Q Consensus 725 A~eFIdeal~----~GGkVLVHC~aGISRSATVVIAYLMk~-----~gmSLeEAl~~VKk~RP~I~PN~GF~kQL 790 (881)
.++|++.... .++.|+|||..|++||++++++.+|.. ...++.+++..+|++|+..-.+.....-+
T Consensus 155 ~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~ 229 (235)
T PF00102_consen 155 FLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFC 229 (235)
T ss_dssp HHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHH
T ss_pred hhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHH
Confidence 3455544443 359999999999999999999998754 24899999999999999888887665544
No 32
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.49 E-value=0.00098 Score=76.94 Aligned_cols=134 Identities=15% Similarity=0.209 Sum_probs=98.2
Q ss_pred eeCCeEECChhhhcCH----HHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCC--CCCcHHHHHHHHHHHHHH
Q 038745 658 ITSSLFIGGALAARSV----YTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDN--EDTNISSIFEEASDFIDH 731 (881)
Q Consensus 658 IlP~LYLGs~~aA~n~----e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds--~~edI~~~FdeA~eFIde 731 (881)
+..+||+|........ ..-.......||++...... .........|+++++..+ ..-++...+++++.|+..
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~--~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~ 369 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTP--KESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRS 369 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCccc--ccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHH
Confidence 5789999988762221 11124567888987543211 122345568999999764 345788999999999999
Q ss_pred HHHc--CCeEEEEcCCCCcchHHHHHHHHHHhcCC--CH--------------HHHHHHHHHhCCCccCCHHHHHHHHHH
Q 038745 732 VEQT--GGRVLVHCFEGRSRSATLVLAYLMLRKNF--TL--------------LQAWNTLKRVHRRAQPNDGFAKILLEL 793 (881)
Q Consensus 732 al~~--GGkVLVHC~aGISRSATVVIAYLMk~~gm--SL--------------eEAl~~VKk~RP~I~PN~GF~kQLley 793 (881)
.+.. +.+|||+|..|.-.|+.+++|.|++.++. .+ .+-+.+|-..+|.++|..+.+++.-.|
T Consensus 370 ~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 370 HLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 9988 89999999999999999999999998753 22 234566667788888888888876443
No 33
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.39 E-value=0.00097 Score=72.92 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=40.8
Q ss_pred CCeEEEEcCCCCcchHHHHHHHHHHh-----cCCCHHHHHHHHHHhCCCccCCHH
Q 038745 736 GGRVLVHCFEGRSRSATLVLAYLMLR-----KNFTLLQAWNTLKRVHRRAQPNDG 785 (881)
Q Consensus 736 GGkVLVHC~aGISRSATVVIAYLMk~-----~gmSLeEAl~~VKk~RP~I~PN~G 785 (881)
.++|+|||.+|+|||+|+|+..++.. ...++.+++..+|+.|+.+-.+..
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~ 283 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQ 283 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHH
Confidence 47999999999999999888776542 247889999999999997665544
No 34
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.37 E-value=0.00029 Score=69.64 Aligned_cols=58 Identities=19% Similarity=0.444 Sum_probs=42.4
Q ss_pred CCceEEeeecCCCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHH
Q 038745 701 DLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHCFEGRSRSATLVLAYLML 760 (881)
Q Consensus 701 ~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal~~GGkVLVHC~aGISRSATVVIAYLMk 760 (881)
.++.|++||+.|...+ ....|+..++|+... ..+..+.+||.+|.+|+.|..+.|.|.
T Consensus 91 ~g~~Y~Ripitd~~~P-~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 91 NGLRYYRIPITDHQAP-DPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp TT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCC-CHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999998544 345578888888877 668999999999999999988888774
No 35
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.35 E-value=0.0004 Score=78.58 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=94.3
Q ss_pred CeeeeCCeEECChhhhcCHHHHHHc--CceEEEEeeccCcCC-CCCCCCCCceEEeeecCC---CCCCcHHHHH-HHHHH
Q 038745 655 PSSITSSLFIGGALAARSVYTLKHL--GITHILCLCANEIGQ-SDSQFPDLFKYKNFSISD---NEDTNISSIF-EEASD 727 (881)
Q Consensus 655 PSEIlP~LYLGs~~aA~n~e~LK~l--GIThVLNV~seei~~-~~~~~p~gf~Yl~IPV~D---s~~edI~~~F-deA~e 727 (881)
...+.|+-+ .+........|+.+ .|.-++++......- .......++.|+.+.-.- .+......-| ..+-.
T Consensus 38 ~~k~~~~~~--~f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~ 115 (393)
T KOG2386|consen 38 STKTFPGSQ--RFQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKG 115 (393)
T ss_pred CcCCCCCcc--ccCHHHHHHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHH
Confidence 444555444 23344445555554 456666664321111 111223345565543321 2233333333 34445
Q ss_pred HHHHHHHcCCeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHhc
Q 038745 728 FIDHVEQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKLH 798 (881)
Q Consensus 728 FIdeal~~GGkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLleyEkkL~ 798 (881)
|++..+..+.-|+|||++|++|++-++++|||...+|+..+|++.+..+|+...-....+..|...+....
T Consensus 116 f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 116 FVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred HHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccc
Confidence 88878888999999999999999999999999999999999999999999988778888888887776655
No 36
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.18 E-value=0.0014 Score=72.37 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=43.2
Q ss_pred CeEEEEcCCCCcchHHHHHHHHHH-----hcCCCHHHHHHHHHHhCCCccCCHH---HHHHHH
Q 038745 737 GRVLVHCFEGRSRSATLVLAYLML-----RKNFTLLQAWNTLKRVHRRAQPNDG---FAKILL 791 (881)
Q Consensus 737 GkVLVHC~aGISRSATVVIAYLMk-----~~gmSLeEAl~~VKk~RP~I~PN~G---F~kQLl 791 (881)
++|+|||.+|+|||+++|+..++. ....++.+++..+|..|+.+-.+.. |..+++
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~~l 310 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYKAL 310 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 799999999999999998875543 2358999999999999997766553 444443
No 37
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.17 E-value=0.0023 Score=68.44 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcC-CeEEEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCH
Q 038745 723 EEASDFIDHVEQTG-GRVLVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPND 784 (881)
Q Consensus 723 deA~eFIdeal~~G-GkVLVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~ 784 (881)
+....++...+..+ +.||+||.+|..|++.+++.|++...++....+-+|++--++......
T Consensus 122 e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 122 ERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 44444554444444 999999999999999999999988877777778888877555444444
No 38
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.15 E-value=0.0021 Score=70.61 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=41.0
Q ss_pred CeEEEEcCCCCcchHHHHHHHHHH-----hcCCCHHHHHHHHHHhCCCccCCHH
Q 038745 737 GRVLVHCFEGRSRSATLVLAYLML-----RKNFTLLQAWNTLKRVHRRAQPNDG 785 (881)
Q Consensus 737 GkVLVHC~aGISRSATVVIAYLMk-----~~gmSLeEAl~~VKk~RP~I~PN~G 785 (881)
++|+|||.+|+|||++.|+..++. ....++.+++..+|..|+.+-.+..
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~ 283 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFD 283 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHH
Confidence 799999999999999999887543 2358999999999999997766543
No 39
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.14 E-value=0.0018 Score=71.01 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCeEEEEcCCCCcchHHHHHHHHHH-----hcCCCHHHHHHHHHHhCCCccCCH---HHHHHH
Q 038745 736 GGRVLVHCFEGRSRSATLVLAYLML-----RKNFTLLQAWNTLKRVHRRAQPND---GFAKIL 790 (881)
Q Consensus 736 GGkVLVHC~aGISRSATVVIAYLMk-----~~gmSLeEAl~~VKk~RP~I~PN~---GF~kQL 790 (881)
.|+|+|||.+|+|||++.|+..++. ....++.+++..+|+.|+..-.+. .|..++
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~ 283 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFCYHL 283 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHHHHHH
Confidence 4799999999999999998877654 234799999999999999765554 455553
No 40
>PHA02738 hypothetical protein; Provisional
Probab=96.75 E-value=0.0088 Score=66.14 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=40.0
Q ss_pred CCeEEEEcCCCCcchHHHHHHHHHH-----hcCCCHHHHHHHHHHhCCCccCCHHH
Q 038745 736 GGRVLVHCFEGRSRSATLVLAYLML-----RKNFTLLQAWNTLKRVHRRAQPNDGF 786 (881)
Q Consensus 736 GGkVLVHC~aGISRSATVVIAYLMk-----~~gmSLeEAl~~VKk~RP~I~PN~GF 786 (881)
.++|+|||.+|+|||+|.|+..++. ....++.+++..+|+.|+..-.+...
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~Q 282 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQ 282 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHH
Confidence 3689999999999999877666433 23478999999999999976555433
No 41
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=96.52 E-value=0.0058 Score=75.51 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=57.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHc-CCeEEEEcCCCCcchHHHHHHHHHHh-----cCCCHHHHHHHHHHhCCCccCC
Q 038745 710 ISDNEDTNISSIFEEASDFIDHVEQT-GGRVLVHCFEGRSRSATLVLAYLMLR-----KNFTLLQAWNTLKRVHRRAQPN 783 (881)
Q Consensus 710 V~Ds~~edI~~~FdeA~eFIdeal~~-GGkVLVHC~aGISRSATVVIAYLMk~-----~gmSLeEAl~~VKk~RP~I~PN 783 (881)
.+|...++-.++|-+-++.|..++.. +-.|+|||.+|||||++++++=+|.. ..+..-+.++.+|..|-.+-++
T Consensus 1036 WPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT 1115 (1144)
T KOG0792|consen 1036 WPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQT 1115 (1144)
T ss_pred cccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccc
Confidence 35555555556666566666666655 55999999999999999987655543 2478899999999999988887
Q ss_pred HHHH
Q 038745 784 DGFA 787 (881)
Q Consensus 784 ~GF~ 787 (881)
.+..
T Consensus 1116 ~~QY 1119 (1144)
T KOG0792|consen 1116 LSQY 1119 (1144)
T ss_pred hHHh
Confidence 6643
No 42
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.45 E-value=0.037 Score=60.33 Aligned_cols=84 Identities=25% Similarity=0.335 Sum_probs=52.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHH---HcCCeEEEEcCCCCcchHHHHHHHHHHhc-CCC-------------HHHHHHH
Q 038745 710 ISDNEDTNISSIFEEASDFIDHVE---QTGGRVLVHCFEGRSRSATLVLAYLMLRK-NFT-------------LLQAWNT 772 (881)
Q Consensus 710 V~Ds~~edI~~~FdeA~eFIdeal---~~GGkVLVHC~aGISRSATVVIAYLMk~~-gmS-------------LeEAl~~ 772 (881)
..|....+|.+ .+++|+-.. ...|.++|||.||+||++|.++.-.+... .-+ ..+.+..
T Consensus 193 W~D~~~p~i~s----l~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~ 268 (302)
T COG5599 193 WVDFNVPDIRS----LTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLS 268 (302)
T ss_pred ccccCCcCHHH----HHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHH
Confidence 34665556644 556665544 25699999999999999998776654432 211 2234556
Q ss_pred HHHhCCCccCCHHHHHHHHHHHHHh
Q 038745 773 LKRVHRRAQPNDGFAKILLELDRKL 797 (881)
Q Consensus 773 VKk~RP~I~PN~GF~kQLleyEkkL 797 (881)
+|++|-.+--|.....-|...-..|
T Consensus 269 LRsQRmkmVQn~~Qf~flY~~~~~l 293 (302)
T COG5599 269 LRSQRMKMVQNKTQFKFLYDAFLEL 293 (302)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6777776666666555554443333
No 43
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.96 E-value=0.096 Score=58.47 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=37.9
Q ss_pred cCCeEEEEcCCCCcchHHHHHHH-HHHh--c---CCCHHHHHHHHHHhCCCccCCHH
Q 038745 735 TGGRVLVHCFEGRSRSATLVLAY-LMLR--K---NFTLLQAWNTLKRVHRRAQPNDG 785 (881)
Q Consensus 735 ~GGkVLVHC~aGISRSATVVIAY-LMk~--~---gmSLeEAl~~VKk~RP~I~PN~G 785 (881)
..+.+.|||.+|+||++|+++.. .|.. . .....+.+..+|..|+.+..+..
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~ 354 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPL 354 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchh
Confidence 35899999999999999999655 3333 1 24588888889998886554443
No 44
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=94.14 E-value=0.051 Score=62.55 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=36.6
Q ss_pred HcCCeEEEEcCCCCcchHHHHHH-HHHH---h----cCCCHHHHHHHHHHhCCCc
Q 038745 734 QTGGRVLVHCFEGRSRSATLVLA-YLML---R----KNFTLLQAWNTLKRVHRRA 780 (881)
Q Consensus 734 ~~GGkVLVHC~aGISRSATVVIA-YLMk---~----~gmSLeEAl~~VKk~RP~I 780 (881)
..-|.|.|||.|||+|++|+++. .||- . +.++....+.+||..|.-+
T Consensus 449 ~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGm 503 (600)
T KOG0790|consen 449 MDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGM 503 (600)
T ss_pred cccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcch
Confidence 34589999999999999996543 3432 3 3478999999999999854
No 45
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=93.17 E-value=0.39 Score=48.10 Aligned_cols=101 Identities=18% Similarity=0.293 Sum_probs=52.8
Q ss_pred eeCCeEECChhhhcCHHHHHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHHHHHc--
Q 038745 658 ITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQT-- 735 (881)
Q Consensus 658 IlP~LYLGs~~aA~n~e~LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIdeal~~-- 735 (881)
|.++||.+.... ..++..=+|..++-.+ +.|..+ -.|...-+|.... .-+.-+++.++.
T Consensus 4 i~drLyf~~~~~-----~p~~~~~~~yF~iD~~------------l~Y~~F-~~DFGPlnL~~ly-rfc~~l~~~L~~~~ 64 (141)
T PF14671_consen 4 IPDRLYFASLRN-----KPKSTPNTHYFSIDDE------------LVYENF-YADFGPLNLAQLY-RFCCKLNKKLKSPE 64 (141)
T ss_dssp SSSSEEEEE-SS---------BTTEEEEE-TTT------------S----S-SS------HHHHH-HHHHHHHHHHH-GG
T ss_pred CCCcEEEEEeCC-----CCCCCCCcEEEEeCCe------------EEEecc-cCcCCCccHHHHH-HHHHHHHHHHcCHH
Confidence 567888877655 2333344666665221 122222 2344555665543 334444444443
Q ss_pred -CCeEEEEcCCCCcc----hHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 038745 736 -GGRVLVHCFEGRSR----SATLVLAYLMLRKNFTLLQAWNTLKRVH 777 (881)
Q Consensus 736 -GGkVLVHC~aGISR----SATVVIAYLMk~~gmSLeEAl~~VKk~R 777 (881)
.++.+|||...-.+ ++.++.||+|...+||.++|++-+...-
T Consensus 65 ~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 65 LKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp GTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred hcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 68899999877653 4788999999999999999999987754
No 46
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=91.27 E-value=0.26 Score=43.86 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=29.4
Q ss_pred CCcceEEEeecCcc---hhhhhhHHHHHHHHHhCCCCCceeEEeccC
Q 038745 164 PKEAAAVIKFSSSR---MATQSERLGYEFAKWLGVRTPQARVIHNCS 207 (881)
Q Consensus 164 ~~e~a~ViK~~ssr---~a~qsE~~~~ela~~lGv~~P~~Rvv~~~s 207 (881)
....--+|||.+.+ ....-|.+++.||+.+|+.+|.+++++...
T Consensus 24 ~~~~~~IvK~~~~~~~~~~~~nE~~~~~lA~~~Gi~v~~~~l~~~~~ 70 (81)
T PF07805_consen 24 DAPSTHIVKFPSSRDDPDLVENEYACMRLARAAGIPVPETRLIRFGD 70 (81)
T ss_dssp T---SEEEE-S-CEEETTHHHHHHHHHHHHHHTT-----EEEEEETT
T ss_pred CCCceEEEeCCCcccccchHHHHHHHHHHHHHcCCCcCceEEEEECC
Confidence 44557899999977 677789999999999999999999988654
No 47
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=91.27 E-value=0.56 Score=53.27 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHHHHH-HHHhcC----CCHHHHHHHHHHhCCCccCCHHHHHH
Q 038745 715 DTNISSIFEEASDFIDHVEQTGGRVLVHCFEGRSRSATLVLAY-LMLRKN----FTLLQAWNTLKRVHRRAQPNDGFAKI 789 (881)
Q Consensus 715 ~edI~~~FdeA~eFIdeal~~GGkVLVHC~aGISRSATVVIAY-LMk~~g----mSLeEAl~~VKk~RP~I~PN~GF~kQ 789 (881)
...+.+++.-.-+.|. ...+.++|||.+|++|++|.++-- |++..+ .+.-..+..+|..|+.+-++....--
T Consensus 269 ~~sl~~f~~~~r~~~~---~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvf 345 (374)
T KOG0791|consen 269 TESLLQFVRMVRQSLD---TSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVF 345 (374)
T ss_pred chhHHHHHHHHHhhcc---cCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHH
Confidence 3445554443333333 237899999999999999987655 444333 34555666678888888888766555
Q ss_pred HHH
Q 038745 790 LLE 792 (881)
Q Consensus 790 Lle 792 (881)
|.+
T Consensus 346 l~~ 348 (374)
T KOG0791|consen 346 LHQ 348 (374)
T ss_pred HHH
Confidence 543
No 48
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=84.70 E-value=3 Score=41.42 Aligned_cols=38 Identities=26% Similarity=0.223 Sum_probs=24.1
Q ss_pred chhhhcccCCCCccCccc-ccccHHHHHHHHHHHhhHHh
Q 038745 248 CLFLMSYVHGSPLLESSS-AFESRETAEKTAAALGRVLM 285 (881)
Q Consensus 248 ~ll~M~yv~G~~l~~~~~-~f~~~~~~~~~a~~LGr~l~ 285 (881)
..+||+||+|.++..... .+.+.+...+++..+|+.|.
T Consensus 75 ~~~v~e~i~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~ 113 (223)
T cd05154 75 PFYVMERVDGRVLRDRLLRPELSPEERRALARALADTLA 113 (223)
T ss_pred ceEEEEEeCCEecCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 468999999999988653 33344334445555555543
No 49
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=82.67 E-value=1.3 Score=56.11 Aligned_cols=95 Identities=9% Similarity=-0.008 Sum_probs=54.5
Q ss_pred chHHHhhccccccccccCcccccccccccccCCCCCCCcchHhhhcceEEEEecCceEEEEEecCCCCCCCCCCcceEEE
Q 038745 92 NSLWERLGKASMLDIESSLFSWDMLSSLHHTEHSSSTDQSEDELNKALEVTVNSGGVVFFALFNQPGSDDAPPKEAAAVI 171 (881)
Q Consensus 92 ~~l~~rl~~~~~~~i~~~~~~w~~l~s~~~~~~~~~~~~~~~~~~~~~~v~vnsgGvvf~~~f~~~~~~~~~~~e~a~Vi 171 (881)
..-|++..+|+..-+...-|+|..= ....++....-- ...+-++-|+|+..+.. ...+.+-+-|
T Consensus 119 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~t~i~i~~~~~~p~~~~---------~~~~~~~it~ 182 (1087)
T KOG4228|consen 119 RDVQALMLSAATAHVNWRRFSATVG-----PLAIASPGLGPP--STYIQITTNANSPIQPG---------EEEEYTTITG 182 (1087)
T ss_pred cchhhhhhhhhhhccCccccccccc-----ccccCCcccCCC--CceEEEeccCCCCCCCC---------cceEEEEEEe
Confidence 4567778888888888777777653 333222221111 55677777777766522 1222223333
Q ss_pred eecCcchhhhhhHHHHHHHHHhCCCCCceeEEec
Q 038745 172 KFSSSRMATQSERLGYEFAKWLGVRTPQARVIHN 205 (881)
Q Consensus 172 K~~ssr~a~qsE~~~~ela~~lGv~~P~~Rvv~~ 205 (881)
=+...... +..-|+|-.+-+...+..+|.-.
T Consensus 183 ~w~~~~~~---~~~~ykl~~~~~d~~~~~~v~~~ 213 (1087)
T KOG4228|consen 183 SWSPPHAV---SLDTYKLLHLDPDTGYEISVTLT 213 (1087)
T ss_pred cCCCCCcc---cchhhhhhhcCCcccceeeeecc
Confidence 33332222 66778887777777777777764
No 50
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=81.99 E-value=1.9 Score=42.60 Aligned_cols=80 Identities=23% Similarity=0.205 Sum_probs=45.9
Q ss_pred ceEEEeecCcc---hhhhhhHHHHHHHHHhCCCCCceeEEeccChhHHHHHHHHHHHHhhhcccCccccccchHHHHHHh
Q 038745 167 AAAVIKFSSSR---MATQSERLGYEFAKWLGVRTPQARVIHNCSSEWLQIKEAAEKARATATSEGDEIGEMTCSELLEAL 243 (881)
Q Consensus 167 ~a~ViK~~ssr---~a~qsE~~~~ela~~lGv~~P~~Rvv~~~s~ew~~i~~a~~~~~~~~~~~~~~~~~~~c~e~le~l 243 (881)
+..|||+.... ...+.|.--.....-.|+.+|.+- ... ..+...
T Consensus 21 ~~~vlK~~~~~~~~~~~~~e~~~~~~l~~~~~pvP~~~--~~~-------------------~~~~~~------------ 67 (239)
T PF01636_consen 21 GRYVLKFYRPPDAAERLRREAAVLRQLAEHGIPVPRVL--AFD-------------------TSDEFN------------ 67 (239)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHHHTTSBS--EE--EEE-------------------EETEET------------
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCceEE--eec-------------------cccccc------------
Confidence 58999998766 344455555555556677566543 100 001111
Q ss_pred hhccchhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHh
Q 038745 244 ELSRCLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLM 285 (881)
Q Consensus 244 ~~~~~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~ 285 (881)
...+++|+||+|.++.. ..+......+++++|+++.
T Consensus 68 --~~~~~~~~~i~g~~~~~----~~~~~~~~~~~~~~~~~l~ 103 (239)
T PF01636_consen 68 --GFPYLLMEYIPGRPLDD----ELSPEQRPELLRQLGRALA 103 (239)
T ss_dssp --SEEEEEEEEESSEEHHH----TSTHHHHHHHHHHHHHHHH
T ss_pred --ccceEEEEEeccccccc----cccccccccccccchhhhh
Confidence 11789999999999998 3333334555566666655
No 51
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=78.07 E-value=2.7 Score=40.33 Aligned_cols=59 Identities=31% Similarity=0.450 Sum_probs=37.5
Q ss_pred chhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecC
Q 038745 248 CLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADK 315 (881)
Q Consensus 248 ~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~ 315 (881)
..+|||||+|.++... ....+...++++++|+++-...+- ..+ .|. .+-+|+|||+.+.
T Consensus 66 ~~lv~e~i~G~~l~~~--~~~~~~~~~~l~~~l~~LH~~~~~---~~~-~~H---gD~~~~Nil~~~~ 124 (170)
T cd05151 66 GVLITEFIEGSELLTE--DFSDPENLEKIAKLLKKLHSSPLP---DLV-PCH---NDLLPGNFLLDDG 124 (170)
T ss_pred CeEEEEecCCCccccc--cccCHHHHHHHHHHHHHHhCCCCC---Cce-eec---CCCCcCcEEEECC
Confidence 4589999999999864 233344456777777776544321 000 122 4678999999843
No 52
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=74.62 E-value=14 Score=44.45 Aligned_cols=150 Identities=20% Similarity=0.304 Sum_probs=71.8
Q ss_pred cCceEEEEEecCCCCCCCCCCcceEEEeecCcchhhhhh---HHHHHHHHHhCCCCCceeEEec--cChhHH-HH-----
Q 038745 145 SGGVVFFALFNQPGSDDAPPKEAAAVIKFSSSRMATQSE---RLGYEFAKWLGVRTPQARVIHN--CSSEWL-QI----- 213 (881)
Q Consensus 145 sgGvvf~~~f~~~~~~~~~~~e~a~ViK~~ssr~a~qsE---~~~~ela~~lGv~~P~~Rvv~~--~s~ew~-~i----- 213 (881)
|=|.|+.|....++ .-||||.-.-.+..+=+ ..-+.+|.++.-..|..|.++- -.+|+. .+
T Consensus 131 SiaQVh~A~l~~~G--------~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~~ElD 202 (537)
T PRK04750 131 SIAQVHFARLKDNG--------REVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLHDELD 202 (537)
T ss_pred CccEEEEEEECCCC--------CEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHhhC
Confidence 34889999764422 35888876644432111 2346688888877888776542 111221 11
Q ss_pred --HHHHHHHHhhhcccCccccccchHHHHHHhhhccchhhhcccCCCCccCcc----cccccHHHHHHHHHHHhhHHhhh
Q 038745 214 --KEAAEKARATATSEGDEIGEMTCSELLEALELSRCLFLMSYVHGSPLLESS----SAFESRETAEKTAAALGRVLMLD 287 (881)
Q Consensus 214 --~~a~~~~~~~~~~~~~~~~~~~c~e~le~l~~~~~ll~M~yv~G~~l~~~~----~~f~~~~~~~~~a~~LGr~l~lD 287 (881)
.+| +++........+. ..+.+=++...+ .+.-.|+||||.|.++.+.. ...+....|+..++. ++--
T Consensus 203 ~~~Ea-~N~~~~~~~f~~~-~~v~VP~v~~d~-st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~----~~~Q 275 (537)
T PRK04750 203 LMREA-ANASQLRRNFEDS-DMLYVPEVYWDY-CSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEV----FFTQ 275 (537)
T ss_pred HHHHH-HHHHHHHHHccCC-CCeecceeeccc-CCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHH----HHHH
Confidence 111 1221111111000 011112222222 12345999999999997521 112223344444333 3322
Q ss_pred hhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 288 LVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 288 ~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
+++ |.+=-+ +=.|+||++.+.+
T Consensus 276 -if~--~GffHa----DpHPGNIlv~~~g 297 (537)
T PRK04750 276 -VFR--DGFFHA----DMHPGNIFVSYDP 297 (537)
T ss_pred -HHh--CCeeeC----CCChHHeEEecCC
Confidence 232 222111 4678999998765
No 53
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=71.25 E-value=22 Score=36.52 Aligned_cols=101 Identities=11% Similarity=0.167 Sum_probs=60.3
Q ss_pred eEEEEecCceEEEEEecCCCCCCCCCCcceEEEeecCcc--h--hhhhhHHHHHHHHHhCCCCCceeEEeccChhHHHHH
Q 038745 139 LEVTVNSGGVVFFALFNQPGSDDAPPKEAAAVIKFSSSR--M--ATQSERLGYEFAKWLGVRTPQARVIHNCSSEWLQIK 214 (881)
Q Consensus 139 ~~v~vnsgGvvf~~~f~~~~~~~~~~~e~a~ViK~~ssr--~--a~qsE~~~~ela~~lGv~~P~~Rvv~~~s~ew~~i~ 214 (881)
++|+.-+||..=..+.-..++. +..-+|+|+.... + --..|......+...|+ +|.+ +....
T Consensus 1 ~~i~~l~gG~tN~~~~v~~~~~----~~~~~vlR~~~~~~~~~~d~~~E~~~~~~l~~~gl-~P~v--~~~~~------- 66 (235)
T cd05157 1 ITFKRFTGGITNKLVKVSNKED----NQDAVLVRVYGNKTELIIDRERELRIHKLLSKHGL-APKL--YATFQ------- 66 (235)
T ss_pred CeEEEcCCcccceEEEEEcCCC----CCCeEEEEEccCCccceecHHHHHHHHHHHHhCCC-CCeE--EEEeC-------
Confidence 4677778887644433221110 2345777855421 1 11257777777777887 6754 32110
Q ss_pred HHHHHHHhhhcccCccccccchHHHHHHhhhccchhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhhh
Q 038745 215 EAAEKARATATSEGDEIGEMTCSELLEALELSRCLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLDL 288 (881)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~c~e~le~l~~~~~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~ 288 (881)
-.++||||+|.++... .+.......++++.|+++=-++.
T Consensus 67 ---------------------------------~~~l~e~i~G~~l~~~--~~~~~~~~~~la~~l~~lH~~~~ 105 (235)
T cd05157 67 ---------------------------------NGLIYEFIPGRTLEPE--DLRNPKIYRLIARELAKLHSIKP 105 (235)
T ss_pred ---------------------------------CcEEEEeeCCCcCCHH--HccChHHHHHHHHHHHHHhcccc
Confidence 0279999999998753 34445567788999999876543
No 54
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=70.50 E-value=12 Score=46.06 Aligned_cols=60 Identities=20% Similarity=0.375 Sum_probs=42.5
Q ss_pred CCeEEEEcCCCCcchHHHHHHHHH-----Hh-cCCCHHHHHHHHHHhCCC-ccCCHHHHHHHHHHHH
Q 038745 736 GGRVLVHCFEGRSRSATLVLAYLM-----LR-KNFTLLQAWNTLKRVHRR-AQPNDGFAKILLELDR 795 (881)
Q Consensus 736 GGkVLVHC~aGISRSATVVIAYLM-----k~-~gmSLeEAl~~VKk~RP~-I~PN~GF~kQLleyEk 795 (881)
...|+|||..|-+|+++-|+-=+. +- ..++....++++|..||- +.-...|--.|...-+
T Consensus 927 ScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAe 993 (1004)
T KOG0793|consen 927 SCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAE 993 (1004)
T ss_pred CCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHH
Confidence 368999999999999985543322 11 247888889999999995 4556666666654433
No 55
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=69.32 E-value=5.1 Score=43.14 Aligned_cols=57 Identities=16% Similarity=0.290 Sum_probs=37.5
Q ss_pred ccchhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 246 SRCLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 246 ~~~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
.+..|+||||+|.+|.+... .+++...+++++|+.+.-..++ ++ +=+|+|+|+++.+
T Consensus 116 ~~~~lvmEyi~G~tL~~~~~--~~~~~~~~i~~~l~~lH~~gi~-------H~-----Dikp~Nili~~~g 172 (232)
T PRK10359 116 HTYIMLIEYIEGVELNDMPE--ISEDVKAKIKASIESLHQHGMV-------SG-----DPHKGNFIVSKNG 172 (232)
T ss_pred CCeEEEEEEECCccHHHhhh--ccHHHHHHHHHHHHHHHHcCCc-------cC-----CCChHHEEEeCCC
Confidence 34678999999999977632 2334455777777776533322 11 3578999998765
No 56
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.31 E-value=6.7 Score=47.75 Aligned_cols=96 Identities=23% Similarity=0.308 Sum_probs=56.0
Q ss_pred cChhHHHHHHHHHHHHhhhcccCccccccchHHHHHHhhhccchhhhcccCCCCc--cC-cccccccHHHHHHHHHHHhh
Q 038745 206 CSSEWLQIKEAAEKARATATSEGDEIGEMTCSELLEALELSRCLFLMSYVHGSPL--LE-SSSAFESRETAEKTAAALGR 282 (881)
Q Consensus 206 ~s~ew~~i~~a~~~~~~~~~~~~~~~~~~~c~e~le~l~~~~~ll~M~yv~G~~l--~~-~~~~f~~~~~~~~~a~~LGr 282 (881)
+-+.|+.|.+-+.-.+...--+.-++ .-|- |...-|.|||||.=|+.. ++ -+.|..--+.|..|-.+|-
T Consensus 66 s~EKWqDIlKEVrFL~~l~HPntieY--kgCy-----Lre~TaWLVMEYClGSAsDlleVhkKplqEvEIAAi~~gaL~- 137 (948)
T KOG0577|consen 66 SNEKWQDILKEVRFLRQLRHPNTIEY--KGCY-----LREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQ- 137 (948)
T ss_pred cHHHHHHHHHHHHHHHhccCCCcccc--ccee-----eccchHHHHHHHHhccHHHHHHHHhccchHHHHHHHHHHHHH-
Confidence 45789999988877766554555554 2232 445569999999999752 22 1244444444444444443
Q ss_pred HHhhhhhhcCCCCCCccccccCCCCCceeeecCcc
Q 038745 283 VLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKMA 317 (881)
Q Consensus 283 ~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~~ 317 (881)
.|-. |+---|+. -+=-.+|||+++.+.
T Consensus 138 --gLaY-LHS~~~IH-----RDiKAGNILLse~g~ 164 (948)
T KOG0577|consen 138 --GLAY-LHSHNRIH-----RDIKAGNILLSEPGL 164 (948)
T ss_pred --HHHH-HHHhhHHh-----hhccccceEecCCCe
Confidence 3332 22223333 135678999999863
No 57
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=66.61 E-value=20 Score=32.45 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=19.6
Q ss_pred HcCCeEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 038745 734 QTGGRVLVHCFEGRSRSATLVLAYLMLRKNFT 765 (881)
Q Consensus 734 ~~GGkVLVHC~aGISRSATVVIAYLMk~~gmS 765 (881)
..+..|+|+|..| .||... +.+ ++..|++
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~-L~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAY-LKERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHH-HHHhCCc
Confidence 4568999999988 677543 333 4556654
No 58
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=64.88 E-value=13 Score=47.83 Aligned_cols=45 Identities=24% Similarity=0.516 Sum_probs=34.9
Q ss_pred CCeEEEEcCCCCcchHHHHHHHHHH----hcC-CCHHHHHHHHHHhCCCc
Q 038745 736 GGRVLVHCFEGRSRSATLVLAYLML----RKN-FTLLQAWNTLKRVHRRA 780 (881)
Q Consensus 736 GGkVLVHC~aGISRSATVVIAYLMk----~~g-mSLeEAl~~VKk~RP~I 780 (881)
.+++.|||..|.+||++.|++-+.. +.+ ++.-+|.+.++..||.+
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~m 1067 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGM 1067 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccc
Confidence 6899999999999998877665433 333 67778888888888854
No 59
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=63.02 E-value=7 Score=42.26 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=38.3
Q ss_pred ccchhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCccc
Q 038745 246 SRCLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKMAS 318 (881)
Q Consensus 246 ~~~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~~~ 318 (881)
.-++|+||||.|.+|.+... -.+..++++.+++=++.-.- .++ =+=||+|+|+++.+..
T Consensus 116 ~~~~ll~EYIeG~~l~d~~~--i~e~~~~ki~~~ikqlH~~G-------~~H-----GD~hpgNFlv~~~~i~ 174 (229)
T PF06176_consen 116 SSYVLLMEYIEGVELNDIED--IDEDLAEKIVEAIKQLHKHG-------FYH-----GDPHPGNFLVSNNGIR 174 (229)
T ss_pred eEEEEEEEEecCeecccchh--cCHHHHHHHHHHHHHHHHcC-------Ccc-----CCCCcCcEEEECCcEE
Confidence 34679999999999988532 23345566666665443322 222 1568999999987643
No 60
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=60.93 E-value=59 Score=34.90 Aligned_cols=38 Identities=5% Similarity=0.172 Sum_probs=28.7
Q ss_pred hhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhhhh
Q 038745 250 FLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLDLV 289 (881)
Q Consensus 250 l~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~~ 289 (881)
+||+||+|.++... .+......+++|+.|+++=-++.-
T Consensus 74 ~v~e~i~G~~l~~~--~~~~~~~~~~ia~~L~~lH~~~~~ 111 (302)
T cd05156 74 RIEEFIPSRTLTTE--ELRDPDISAEIARRMAKLHSIVVP 111 (302)
T ss_pred chhheeCCCcCCHh--HcCCcHHHHHHHHHHHHhhCCCCC
Confidence 47999999998753 333455678999999998877654
No 61
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=59.22 E-value=19 Score=37.45 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=21.1
Q ss_pred chhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHh
Q 038745 248 CLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLM 285 (881)
Q Consensus 248 ~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~ 285 (881)
+++||+||+|.++.+.... ... +.++.||+++.
T Consensus 69 ~~~l~~~i~G~~l~~~~~~-~~~----~l~~~la~~l~ 101 (235)
T cd05155 69 PWSVYRWLEGETATAAALS-DPS----EFAEDLADFLA 101 (235)
T ss_pred ceEEEEeecCCCCCccccC-CHH----HHHHHHHHHHH
Confidence 4678999999999875332 222 44555555554
No 62
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=57.80 E-value=6.1 Score=43.23 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=37.4
Q ss_pred hcceEEEEecCceEEEEEecCCCCCCCCCCcceEEEeecCcchhhhhhHHHHHHHHHhCCC-CCceeEE
Q 038745 136 NKALEVTVNSGGVVFFALFNQPGSDDAPPKEAAAVIKFSSSRMATQSERLGYEFAKWLGVR-TPQARVI 203 (881)
Q Consensus 136 ~~~~~v~vnsgGvvf~~~f~~~~~~~~~~~e~a~ViK~~ssr~a~qsE~~~~ela~~lGv~-~P~~Rvv 203 (881)
|..|-++|.-||+---|+|.--. ...-+--|-.-.|| +.|.=+|.+.+.||.. +|...+.
T Consensus 17 N~t~~~~~~~~~~~~~~VYKPv~-------gErPLWDFpdGtLa-~REvAAYlvs~~lGw~~VPpTvlr 77 (253)
T TIGR03843 17 NATLLCEVTLGGVSARAVYKPVR-------GERPLWDFPDGTLA-GREVAAYLVSEALGWGLVPPTVLR 77 (253)
T ss_pred ceeEEEEEecCCeeEEEEECCcC-------CccccccCCCCchH-HHHHHHHHHHHHhCCCcCCCeeee
Confidence 55666777777766555553210 00112224444565 7899999999999965 5777664
No 63
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=57.77 E-value=29 Score=40.35 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=32.7
Q ss_pred cchhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
...|+|||++|.+|.+............++|+.+-+.+ +..+..++ =++ .+=.|+|||+.+.+
T Consensus 232 ~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~-l~ql~~~g-~~H-----~D~hPgNilv~~~g 294 (437)
T TIGR01982 232 ERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSF-LNQVLRDG-FFH-----ADLHPGNIFVLKDG 294 (437)
T ss_pred CceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHH-HHHHHhCC-cee-----CCCCcccEEECCCC
Confidence 46799999999999774321100001123444333322 23333221 011 24578999997653
No 64
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.04 E-value=21 Score=43.41 Aligned_cols=43 Identities=49% Similarity=0.713 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchHHHH-HHHHHH
Q 038745 718 ISSIFEEASDFIDHVEQTGGRVLVHCFEGRSRSATLV-LAYLML 760 (881)
Q Consensus 718 I~~~FdeA~eFIdeal~~GGkVLVHC~aGISRSATVV-IAYLMk 760 (881)
|...+..|+...++....+..|||||..|=.|++-++ +|-||.
T Consensus 356 i~~lLaga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 356 ISSLLAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 3444666666667777778899999999999998765 455654
No 65
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=53.83 E-value=91 Score=28.10 Aligned_cols=59 Identities=31% Similarity=0.379 Sum_probs=34.8
Q ss_pred cchhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecC
Q 038745 247 RCLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADK 315 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~ 315 (881)
...++|+|+.|.++... ........+.++++.|.++-.+.. .. . +--+=+|+|||+.+.
T Consensus 67 ~~~~v~e~~~g~~~~~~-~~~~~~~~~~~~~~~l~~lh~~~~-------~~-i-~H~Dl~~~Nil~~~~ 125 (155)
T cd05120 67 WSYLLMEWIEGETLDEV-SEEEKEDIAEQLAELLAKLHQLPL-------LV-L-CHGDLHPGNILVDDG 125 (155)
T ss_pred ccEEEEEecCCeecccC-CHHHHHHHHHHHHHHHHHHhCCCc-------eE-E-EecCCCcceEEEECC
Confidence 36899999999988765 222233344556666666554432 00 0 001335899999873
No 66
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=53.01 E-value=48 Score=33.74 Aligned_cols=63 Identities=8% Similarity=0.100 Sum_probs=35.9
Q ss_pred ccchhhhcccCCCCccCcccc----cccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 246 SRCLFLMSYVHGSPLLESSSA----FESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 246 ~~~ll~M~yv~G~~l~~~~~~----f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
....++|||.+|.+|.+.... .-+......++.++-..|. .|++..-.+. +=+|.||++.+.+
T Consensus 73 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~---~lh~~~i~H~-----di~p~Nili~~~~ 139 (256)
T cd05039 73 NPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGME---YLEEKNFVHR-----DLAARNVLVSEDL 139 (256)
T ss_pred CCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH---HHHhCCccch-----hcccceEEEeCCC
Confidence 346789999999998764321 2233334444444433332 2344433332 2359999997654
No 67
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=51.85 E-value=36 Score=35.04 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=63.5
Q ss_pred ceEEEEEecCCCCCCCCCCcceEEEeecCcch-hhhhhHHHHHHHHHhCCCCCceeEEeccChhHHHHHHHHHHHHhhhc
Q 038745 147 GVVFFALFNQPGSDDAPPKEAAAVIKFSSSRM-ATQSERLGYEFAKWLGVRTPQARVIHNCSSEWLQIKEAAEKARATAT 225 (881)
Q Consensus 147 Gvvf~~~f~~~~~~~~~~~e~a~ViK~~ssr~-a~qsE~~~~ela~~lGv~~P~~Rvv~~~s~ew~~i~~a~~~~~~~~~ 225 (881)
|.||-+...... .....++||...... ..+.|.|-.|+...-.+.-|++ +.... .
T Consensus 20 g~v~~~~~~~~~-----~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i--~~~~~-----------------~ 75 (270)
T cd05056 20 GDVYQGVYMSPE-----NEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHI--VKLIG-----------------V 75 (270)
T ss_pred eeEEEEEEecCC-----CCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCch--hceeE-----------------E
Confidence 677766543211 344568888777666 4566777777665555555542 11100 0
Q ss_pred ccCccccccchHHHHHHhhhccchhhhcccCCCCccCcccc---cccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccc
Q 038745 226 SEGDEIGEMTCSELLEALELSRCLFLMSYVHGSPLLESSSA---FESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLR 302 (881)
Q Consensus 226 ~~~~~~~~~~c~e~le~l~~~~~ll~M~yv~G~~l~~~~~~---f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~ 302 (881)
| ......++|||++|.+|.+.... ..+......++..+-.. |+.+ ++..-..+
T Consensus 76 ----------~-------~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~--l~~l-H~~~~~H~---- 131 (270)
T cd05056 76 ----------I-------TENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTA--LAYL-ESKRFVHR---- 131 (270)
T ss_pred ----------E-------cCCCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHH--HHHH-HhCCeecc----
Confidence 0 01224689999999999765321 12333333333333222 2222 33332222
Q ss_pred cCCCCCceeeecCc
Q 038745 303 WRGNPANLLLADKM 316 (881)
Q Consensus 303 WrGN~~Nll~~~~~ 316 (881)
+=+|+|||++..+
T Consensus 132 -dl~p~nili~~~~ 144 (270)
T cd05056 132 -DIAARNVLVSSPD 144 (270)
T ss_pred -ccChheEEEecCC
Confidence 2359999998653
No 68
>PRK12274 serine/threonine protein kinase; Provisional
Probab=51.42 E-value=27 Score=37.62 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=15.0
Q ss_pred ccchhhhcccCCCCccCc
Q 038745 246 SRCLFLMSYVHGSPLLES 263 (881)
Q Consensus 246 ~~~ll~M~yv~G~~l~~~ 263 (881)
....++|+||.|.+|.+.
T Consensus 71 ~~~~lvmeyI~G~~L~~~ 88 (218)
T PRK12274 71 DGRHLDRSYLAGAAMYQR 88 (218)
T ss_pred cCEEEEEeeecCccHHhh
Confidence 456899999999999654
No 69
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=44.52 E-value=21 Score=35.93 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=33.6
Q ss_pred chhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 248 CLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 248 ~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
-.++|||++|.+|......-.....+.++++++-.+.-. .+ +-++=+|+|||+++.+
T Consensus 106 ~~lv~e~~~g~~L~~~~~~~~~~~~~~~i~~~l~~lh~~--------gi----~H~Dl~p~Nill~~~~ 162 (198)
T cd05144 106 HAVVMEYIDGVELYRVRVLEDPEEVLDEILEEIVKAYKH--------GI----IHGDLSEFNILVDDDE 162 (198)
T ss_pred ceEEEEEeCCcchhhccccccHHHHHHHHHHHHHHHHHC--------CC----CcCCCCcccEEEcCCC
Confidence 468999999999977654333333444444444332221 11 1124489999998654
No 70
>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase. Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1
Probab=43.48 E-value=85 Score=31.81 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.1
Q ss_pred cchhhhcccCCCCccCcc
Q 038745 247 RCLFLMSYVHGSPLLESS 264 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~ 264 (881)
...++|||++|.+|.+..
T Consensus 73 ~~~iv~e~~~~~~l~~~~ 90 (267)
T cd06610 73 ELWLVMPYLSGGSLLDIM 90 (267)
T ss_pred EEEEEEeccCCCcHHHHH
Confidence 467999999999988764
No 71
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=43.29 E-value=27 Score=36.41 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeee
Q 038745 272 TAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLA 313 (881)
Q Consensus 272 ~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~ 313 (881)
....-+.+|+.+-++|.+|+|+||-| +||||.
T Consensus 118 ~r~~f~~sla~~si~~yilg~gDRh~----------~Nili~ 149 (235)
T PF00454_consen 118 ARKNFTRSLAAYSILDYILGLGDRHP----------GNILID 149 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CS--T----------TTEEE-
T ss_pred hhHhhHHHHHHHhhceEEEeecCCCc----------hhheec
Confidence 44677799999999999999999977 799993
No 72
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=41.77 E-value=37 Score=38.69 Aligned_cols=20 Identities=45% Similarity=0.876 Sum_probs=15.5
Q ss_pred HcCCeEEEEcCCCCcchHHH
Q 038745 734 QTGGRVLVHCFEGRSRSATL 753 (881)
Q Consensus 734 ~~GGkVLVHC~aGISRSATV 753 (881)
..|..|||||..|-.|++-+
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~ 248 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQL 248 (353)
T ss_dssp TT--EEEEECTTSSSHHHHH
T ss_pred ccCceEEEEcCCCCcccHHH
Confidence 57899999999999998543
No 73
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=40.92 E-value=21 Score=31.70 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=17.4
Q ss_pred HHHHHHhhHHhhhhhhcCCCCCC
Q 038745 275 KTAAALGRVLMLDLVIRNEDRLP 297 (881)
Q Consensus 275 ~~a~~LGr~l~lD~~l~N~DRlp 297 (881)
...+.|-+.++|+++|+|.||=.
T Consensus 38 ~~~~~l~~~~~fn~ligN~D~H~ 60 (79)
T PF07804_consen 38 ADVRELFRRLVFNYLIGNTDRHL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHCTBS---C
T ss_pred HHHHHHHHHHHHHHHHcCCcCCc
Confidence 45578999999999999999854
No 74
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=40.27 E-value=43 Score=38.06 Aligned_cols=119 Identities=25% Similarity=0.341 Sum_probs=75.6
Q ss_pred HHHHHHhCCCCCceeEEeccChhHHHHHHHHHHHHhhh--------c-----------ccC--------ccccccchHHH
Q 038745 187 YEFAKWLGVRTPQARVIHNCSSEWLQIKEAAEKARATA--------T-----------SEG--------DEIGEMTCSEL 239 (881)
Q Consensus 187 ~ela~~lGv~~P~~Rvv~~~s~ew~~i~~a~~~~~~~~--------~-----------~~~--------~~~~~~~c~e~ 239 (881)
|+.++-.||.+|..+++.+ +.+.+.|.++.+... . .+. -+.-.++=+++
T Consensus 112 y~~~~~~~ipvp~~~~v~t----~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~ 187 (329)
T PF15632_consen 112 YEFMEANGIPVPPYWRVRT----ADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDEL 187 (329)
T ss_pred HHHHHhCCCCCCCEEEeCC----HHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHH
Confidence 6778889999999999875 345555555533320 0 011 12224566778
Q ss_pred HHHhh---hccchhhhcccCCCCc-----cC--------------cccccccHHHHHHHHHHHhhHHhhhhhhcCCCCCC
Q 038745 240 LEALE---LSRCLFLMSYVHGSPL-----LE--------------SSSAFESRETAEKTAAALGRVLMLDLVIRNEDRLP 297 (881)
Q Consensus 240 le~l~---~~~~ll~M~yv~G~~l-----~~--------------~~~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlp 297 (881)
+.+|. .-..||||+|.+|--- -+ ..+.+.-.+...+.|+.|-+.|-||-++|
T Consensus 188 ~~~l~~~~~~~~llvMeyL~G~EySVD~l~~~G~viaaV~R~K~G~~q~l~~~~~l~e~a~~l~~~~~l~g~~N------ 261 (329)
T PF15632_consen 188 LAALQRSEEFPPLLVMEYLPGPEYSVDCLADEGRVIAAVPRRKLGRRQVLENDEELIELARRLAEAFGLDGLFN------ 261 (329)
T ss_pred HHHHhccCCCCCcEEecCCCCCeEEEEEEecCCEEEEEEEEEecCceeEEEECHHHHHHHHHHHHHhCCCceEE------
Confidence 88887 3458999999999521 11 22455556667778888888888888887
Q ss_pred cccccc--CCCCCceeeecCc
Q 038745 298 CRQLRW--RGNPANLLLADKM 316 (881)
Q Consensus 298 c~~l~W--rGN~~Nll~~~~~ 316 (881)
.|+.. +|+|.=|=+-.|.
T Consensus 262 -iQ~r~d~~g~p~LLEINpR~ 281 (329)
T PF15632_consen 262 -IQFRYDEDGNPKLLEINPRP 281 (329)
T ss_pred -EEEEEcCCCCEEEEEeCCCC
Confidence 23434 5776555555553
No 75
>PLN02876 acyl-CoA dehydrogenase
Probab=39.34 E-value=1.1e+02 Score=38.66 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=22.0
Q ss_pred chhhhcccCCCCccCcccccccHHHHHHHHHHHhhHH
Q 038745 248 CLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVL 284 (881)
Q Consensus 248 ~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l 284 (881)
.++|||||+|.++.+...+-.+.+....++.++++.|
T Consensus 119 ~flVME~v~G~~~~~~~~~~~~~~~r~~l~~~l~~~L 155 (822)
T PLN02876 119 AFYIMEYLEGRIFVDPKLPGVAPERRRAIYRATAKVL 155 (822)
T ss_pred ceEEEEecCCcccCCccCCCCCHHHHHHHHHHHHHHH
Confidence 5699999999987754322223333334455555544
No 76
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=38.22 E-value=45 Score=39.27 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=30.8
Q ss_pred ceEEEeecCcc---------hhhhhhHHHHHHHHHhCCCCCceeEEe
Q 038745 167 AAAVIKFSSSR---------MATQSERLGYEFAKWLGVRTPQARVIH 204 (881)
Q Consensus 167 ~a~ViK~~ssr---------~a~qsE~~~~ela~~lGv~~P~~Rvv~ 204 (881)
.-.+|||.... -....|.+++++|+.+||.+|+++++.
T Consensus 222 ~~~IvKF~~~~d~~~~~~~~~~~~nE~~~m~lA~~~Gi~va~~~l~~ 268 (442)
T PRK09775 222 RHVIVKFSAADDNPVSQRWRDLLIAEHLALQVLREAGIPAAATRVIV 268 (442)
T ss_pred ceEEEECCCcccccccccccccHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 46899998532 122469999999999999999999983
No 77
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=37.88 E-value=17 Score=36.13 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=32.8
Q ss_pred cchhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeee
Q 038745 247 RCLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLA 313 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~ 313 (881)
...++|||++|.+|.+....... ..+.+++++|+.+--..+ +-.+=+|+|||+.
T Consensus 71 ~~~lv~e~~~g~~l~~~~~~~~~-~~~~~i~~~l~~lH~~gi------------~H~Dl~~~Nil~~ 124 (199)
T TIGR03724 71 NKTIVMEYIEGKPLKDVIEEGND-ELLREIGRLVGKLHKAGI------------VHGDLTTSNIIVR 124 (199)
T ss_pred CCEEEEEEECCccHHHHHhhcHH-HHHHHHHHHHHHHHHCCe------------ecCCCCcceEEEE
Confidence 35799999999999764322111 445666666666432211 0013468999997
No 78
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=37.35 E-value=20 Score=43.17 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=79.1
Q ss_pred EEEecCceEEEEEecCCCCCCCCCCcceEEEeecCcchhhhh--h-HHHHHHHHHhCCCCCceeEEeccChhHHHH----
Q 038745 141 VTVNSGGVVFFALFNQPGSDDAPPKEAAAVIKFSSSRMATQS--E-RLGYEFAKWLGVRTPQARVIHNCSSEWLQI---- 213 (881)
Q Consensus 141 v~vnsgGvvf~~~f~~~~~~~~~~~e~a~ViK~~ssr~a~qs--E-~~~~ela~~lGv~~P~~Rvv~~~s~ew~~i---- 213 (881)
+-..|-|.|+=|-- .....|+||.---.+..+. . .+-.-++++|.-=.|+.+ ++---+||..-
T Consensus 169 iaaASlaQVhrA~L---------~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~-~~~lvdE~~~~L~~E 238 (538)
T KOG1235|consen 169 IAAASLAQVHRARL---------KNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFD-LVWLVDEIAKSLPQE 238 (538)
T ss_pred hhhcchhheEEEEe---------cCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCc-hhhHHHHHHhhhHhh
Confidence 44567788886642 2255789998776666431 1 133456677777778888 33333333211
Q ss_pred ----H--HHHHHHHhhhcccCccccccchHHHHHHhhhccchhhhcccCCCCccCcc----cccccHHHHHHHHHHHhhH
Q 038745 214 ----K--EAAEKARATATSEGDEIGEMTCSELLEALELSRCLFLMSYVHGSPLLESS----SAFESRETAEKTAAALGRV 283 (881)
Q Consensus 214 ----~--~a~~~~~~~~~~~~~~~~~~~c~e~le~l~~~~~ll~M~yv~G~~l~~~~----~~f~~~~~~~~~a~~LGr~ 283 (881)
+ +++|++++.+.... -.+-+.-=.+...+-. +=.|+||||.|+++.+.. .-..+...+..+.++.+.+
T Consensus 239 LDF~~EA~Nae~~~~~f~~~~-~~~~V~VP~Vy~~~st-~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~q 316 (538)
T KOG1235|consen 239 LDFTKEAKNAERFRENFKDFS-LLTYVLVPKVYWDLST-KRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQ 316 (538)
T ss_pred cchHHHHHhHHHHHHHHHhcc-cccceeCCeehhhcCc-ceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 12222222222111 0000000001111111 247999999999998864 2333444444444554443
Q ss_pred HhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 284 LMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 284 l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
++..+ =++|++ -|+||++...+
T Consensus 317 -----If~~G-ffHaDP-----HPGNilv~~~~ 338 (538)
T KOG1235|consen 317 -----IFKTG-FFHADP-----HPGNILVRPNP 338 (538)
T ss_pred -----HHhcC-CccCCC-----CCCcEEEecCC
Confidence 33444 567775 47999999653
No 79
>PRK14879 serine/threonine protein kinase; Provisional
Probab=37.22 E-value=22 Score=35.64 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=32.6
Q ss_pred cchhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeee
Q 038745 247 RCLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLA 313 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~ 313 (881)
...|+|||++|.+|.+....... ....++..+|..|.. +++.-=++ .+=+|+|||+.
T Consensus 73 ~~~lv~e~~~G~~L~~~~~~~~~--~~~~i~~~i~~~l~~---lH~~~i~H-----~Dl~p~Nil~~ 129 (211)
T PRK14879 73 NFIIVMEYIEGEPLKDLINSNGM--EELELSREIGRLVGK---LHSAGIIH-----GDLTTSNMILS 129 (211)
T ss_pred CCEEEEEEeCCcCHHHHHHhccH--HHHHHHHHHHHHHHH---HHhCCccc-----CCCCcccEEEE
Confidence 46789999999999865433222 234555555543321 12211111 24468999997
No 80
>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional
Probab=37.14 E-value=1.6e+02 Score=32.38 Aligned_cols=60 Identities=5% Similarity=0.021 Sum_probs=37.0
Q ss_pred ccchhhhcccCCC-CccCccc----ccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCcccccc-CCCCCceeeec
Q 038745 246 SRCLFLMSYVHGS-PLLESSS----AFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRW-RGNPANLLLAD 314 (881)
Q Consensus 246 ~~~ll~M~yv~G~-~l~~~~~----~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~W-rGN~~Nll~~~ 314 (881)
.++.||||||+|. +|.+... ..........+..++|+++. ||.-..+.+ +=++.|||+..
T Consensus 108 ~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~---------~LH~~Gi~HgDL~~~NiLl~~ 173 (268)
T PRK15123 108 RTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVR---------DMHAAGINHRDCYICHFLLHL 173 (268)
T ss_pred ceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHH---------HHHHCcCccCCCChhhEEEec
Confidence 4578999999998 6654421 11123345567777887764 233222333 46889999974
No 81
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=37.12 E-value=89 Score=32.41 Aligned_cols=61 Identities=11% Similarity=0.045 Sum_probs=32.5
Q ss_pred chhhhcccCCCCccCccc---ccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 248 CLFLMSYVHGSPLLESSS---AFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 248 ~ll~M~yv~G~~l~~~~~---~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
..++|||++|.+|.+... ...+...+..++..|- -.|..+=+| . +..+ +=+|+|||+.+.+
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~--~aL~~LH~~-~-i~H~----dlkp~nili~~~~ 145 (284)
T cd05081 82 LRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQIC--KGMEYLGSK-R-YVHR----DLATRNILVESEN 145 (284)
T ss_pred eEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHH--HHHHHHHHC-C-ceec----cCCHhhEEECCCC
Confidence 468999999999976432 2223333333333222 223333233 2 3333 2369999997653
No 82
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=36.77 E-value=13 Score=38.53 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=36.1
Q ss_pred hhhccchhhhcccC--CCCccCcccccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCcc
Q 038745 243 LELSRCLFLMSYVH--GSPLLESSSAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKMA 317 (881)
Q Consensus 243 l~~~~~ll~M~yv~--G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~~ 317 (881)
+...+..||||||. |.++........+.+....+.+.+.+- +--.+.+..=.. .+=+..|||+.+...
T Consensus 76 ~~~~~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~--~~~~~~~~givH-----GDLs~~NIlv~~~~~ 145 (188)
T PF01163_consen 76 YDYNRNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEE--IIKMLHKAGIVH-----GDLSEYNILVDDGKV 145 (188)
T ss_dssp EEEETTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHH--HHHHHHCTTEEE-----SS-STTSEEEETTCE
T ss_pred EEEeCCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHH--HHHHHHhcCcee-----cCCChhhEEeecceE
Confidence 35567899999999 999987665442222233333333331 112223333333 233457999998743
No 83
>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s
Probab=36.04 E-value=2e+02 Score=29.54 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=34.7
Q ss_pred cchhhhcccCCCCccCcccc-----------cccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecC
Q 038745 247 RCLFLMSYVHGSPLLESSSA-----------FESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADK 315 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~~-----------f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~ 315 (881)
.+.++|||++|.+|.+.... .-+.......+..|-. +|. .|++..-+.+ +=.|.|||+.+.
T Consensus 82 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~--~l~-~LH~~~i~H~-----dlkp~Nili~~~ 153 (275)
T cd05046 82 PHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIAL--GMD-HLSNARFVHR-----DLAARNCLVSSQ 153 (275)
T ss_pred cceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHH--HHH-HhhhcCcccC-----cCccceEEEeCC
Confidence 36899999999999754321 1123323333333222 222 3444444442 356999999876
Q ss_pred c
Q 038745 316 M 316 (881)
Q Consensus 316 ~ 316 (881)
+
T Consensus 154 ~ 154 (275)
T cd05046 154 R 154 (275)
T ss_pred C
Confidence 5
No 84
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=35.34 E-value=66 Score=34.17 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=32.8
Q ss_pred cchhhhcccCCCCccCcccc-cccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESSSA-FESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~~-f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
...++|||++|.+|.+.... ..+......++..+-. .|..+-.+ .+..+ +=+|.||++.+.+
T Consensus 91 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~--~l~~lH~~--givH~----dl~p~Nilv~~~~ 153 (292)
T cd06657 91 ELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLK--ALSVLHAQ--GVIHR----DIKSDSILLTHDG 153 (292)
T ss_pred EEEEEEecCCCCcHHHHHhcCCCCHHHHHHHHHHHHH--HHHHHHHC--CeecC----CCCHHHEEECCCC
Confidence 36799999999998765421 1122223333333222 22222233 23322 3478999997653
No 85
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=34.78 E-value=1.2e+02 Score=27.07 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=31.4
Q ss_pred EeeecCC---CCCCcHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchH--HHHHHHHHHhcCCC
Q 038745 706 KNFSISD---NEDTNISSIFEEASDFIDHVEQTGGRVLVHCFEGRSRSA--TLVLAYLMLRKNFT 765 (881)
Q Consensus 706 l~IPV~D---s~~edI~~~FdeA~eFIdeal~~GGkVLVHC~aGISRSA--TVVIAYLMk~~gmS 765 (881)
.+||... .........+.............+..|+|+|..|..-.. ++.++|++...|++
T Consensus 34 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 34 VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeecccccchhHHHHHHHHHHHcCCC
Confidence 5555532 223333444444444444444567789999976654332 22234556666664
No 86
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=33.14 E-value=47 Score=27.98 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038745 751 ATLVLAYLMLRKNFTLLQAWNTLKRV 776 (881)
Q Consensus 751 ATVVIAYLMk~~gmSLeEAl~~VKk~ 776 (881)
..-+.+.||..+|++.++||.+++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 34577899999999999999999863
No 87
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.03 E-value=23 Score=46.11 Aligned_cols=68 Identities=25% Similarity=0.346 Sum_probs=46.9
Q ss_pred chhhhcccCCCCccCcccccccHHHHHHHHHH--HhhHHhhhhhhcCCCCCCcccccc---CCCCCceeeecCccchhhh
Q 038745 248 CLFLMSYVHGSPLLESSSAFESRETAEKTAAA--LGRVLMLDLVIRNEDRLPCRQLRW---RGNPANLLLADKMASANMD 322 (881)
Q Consensus 248 ~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~--LGr~l~lD~~l~N~DRlpc~~l~W---rGN~~Nll~~~~~~~~~~~ 322 (881)
-.|||+|.+|+-|+..-.-|.. .-|.+|.= ---|++||-| .++|| +=-|+|||+.-.| |.-|-
T Consensus 150 LYlVMdY~pGGDlltLlSk~~~--~pE~~ArFY~aEiVlAldsl---------H~mgyVHRDiKPDNvLld~~G-HikLA 217 (1317)
T KOG0612|consen 150 LYLVMDYMPGGDLLTLLSKFDR--LPEDWARFYTAEIVLALDSL---------HSMGYVHRDIKPDNVLLDKSG-HIKLA 217 (1317)
T ss_pred eEEEEecccCchHHHHHhhcCC--ChHHHHHHHHHHHHHHHHHH---------HhccceeccCCcceeEecccC-cEeec
Confidence 5799999999999998888881 12344432 2247788875 45889 5899999998775 43443
Q ss_pred hHHHH
Q 038745 323 AMEEA 327 (881)
Q Consensus 323 ~~~~~ 327 (881)
.+..+
T Consensus 218 DFGsC 222 (1317)
T KOG0612|consen 218 DFGSC 222 (1317)
T ss_pred cchhH
Confidence 33333
No 88
>smart00400 ZnF_CHCC zinc finger.
Probab=32.58 E-value=49 Score=27.63 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=24.7
Q ss_pred EEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Q 038745 740 LVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTL 773 (881)
Q Consensus 740 LVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~V 773 (881)
..||.. -++.+- +|.++|+.+++++.+|++++
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 478874 344443 58999999999999999875
No 89
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=32.35 E-value=79 Score=29.04 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=18.3
Q ss_pred cCCeEEEEcCCCCcchHHHHHHHHHHhcCC
Q 038745 735 TGGRVLVHCFEGRSRSATLVLAYLMLRKNF 764 (881)
Q Consensus 735 ~GGkVLVHC~aGISRSATVVIAYLMk~~gm 764 (881)
.+..|+|||..|. ||.. + +.+++..|+
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a-~~~L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-G-AQSLINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-H-HHHHHHCCC
Confidence 3578999999996 6633 3 344456666
No 90
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=32.21 E-value=64 Score=39.35 Aligned_cols=38 Identities=34% Similarity=0.526 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHH-cCCeEEEEcCCCCcchHHHH-HHHHH
Q 038745 722 FEEASDFIDHVEQ-TGGRVLVHCFEGRSRSATLV-LAYLM 759 (881)
Q Consensus 722 FdeA~eFIdeal~-~GGkVLVHC~aGISRSATVV-IAYLM 759 (881)
+-++..||.+++. .|-.|||||.-|-.|+.-|+ +|=||
T Consensus 329 ~L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQll 368 (573)
T KOG1089|consen 329 ILKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLL 368 (573)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHH
Confidence 3344556767766 55899999999999996554 33344
No 91
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=32.02 E-value=1.9e+02 Score=29.90 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.1
Q ss_pred chhhhcccCCCCccCcc
Q 038745 248 CLFLMSYVHGSPLLESS 264 (881)
Q Consensus 248 ~ll~M~yv~G~~l~~~~ 264 (881)
..++|+|+.|.+|.+..
T Consensus 75 ~~lv~e~~~~~~L~~~~ 91 (262)
T cd05071 75 IYIVTEYMSKGSLLDFL 91 (262)
T ss_pred cEEEEEcCCCCcHHHHH
Confidence 46999999999987654
No 92
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=31.18 E-value=1.5e+02 Score=27.84 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 038745 734 QTGGRVLVHCFEGRSRSATLVLAYLMLRKNFT 765 (881)
Q Consensus 734 ~~GGkVLVHC~aGISRSATVVIAYLMk~~gmS 765 (881)
..+.+|+|+|..| .||..+ |..+...|++
T Consensus 62 ~~~~~ivv~C~~G-~rs~~a--a~~L~~~G~~ 90 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIAA--AEAAAQAGFT 90 (117)
T ss_pred CCCCeEEEEcCCC-ccHHHH--HHHHHHCCCC
Confidence 4578899999998 477543 3334555553
No 93
>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down
Probab=31.07 E-value=1.7e+02 Score=31.24 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=33.1
Q ss_pred cchhhhcccCCCCccCccccc--ccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESSSAF--ESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~~f--~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
...++|||++|.+|.+..... -+......++..+-. .|+. |++..++..+ +=+|.|||+.+.+
T Consensus 73 ~~~lv~ey~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~--~l~~-lH~~~~i~H~----dl~p~nil~~~~~ 137 (308)
T cd06615 73 EISICMEHMDGGSLDQVLKKAGRIPENILGKISIAVLR--GLTY-LREKHKIMHR----DVKPSNILVNSRG 137 (308)
T ss_pred EEEEEeeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHH--HHHH-HHhhCCEEEC----CCChHHEEEecCC
Confidence 356899999999987653221 122223333332222 2222 3332233322 3479999997654
No 94
>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=31.06 E-value=1.1e+02 Score=31.20 Aligned_cols=79 Identities=15% Similarity=0.037 Sum_probs=49.7
Q ss_pred cCceEEEEEecCCCCCCCCCCcceEEEeecCcchh-hhhhHHHHHHHHHhCCCCCceeEEeccChhHHHHHHHHHHHHhh
Q 038745 145 SGGVVFFALFNQPGSDDAPPKEAAAVIKFSSSRMA-TQSERLGYEFAKWLGVRTPQARVIHNCSSEWLQIKEAAEKARAT 223 (881)
Q Consensus 145 sgGvvf~~~f~~~~~~~~~~~e~a~ViK~~ssr~a-~qsE~~~~ela~~lGv~~P~~Rvv~~~s~ew~~i~~a~~~~~~~ 223 (881)
+-|+||-+..... ..+...++||.-+.... .+.+.|-.|+...-.++-|.. +....
T Consensus 7 ~~~~v~~~~~~~~-----~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i--v~~~~---------------- 63 (257)
T cd05040 7 SFGVVRRGEWSTS-----GGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENL--IRLYG---------------- 63 (257)
T ss_pred CcccEEeeeEecC-----CCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCc--cceeE----------------
Confidence 3478888876442 12223467787776655 556778888887777776653 22210
Q ss_pred hcccCccccccchHHHHHHhhhccchhhhcccCCCCccCcc
Q 038745 224 ATSEGDEIGEMTCSELLEALELSRCLFLMSYVHGSPLLESS 264 (881)
Q Consensus 224 ~~~~~~~~~~~~c~e~le~l~~~~~ll~M~yv~G~~l~~~~ 264 (881)
. | . . ..+.++|||++|.+|.+..
T Consensus 64 ----------~-~----~--~-~~~~~v~e~~~~~~L~~~l 86 (257)
T cd05040 64 ----------V-V----L--T-HPLMMVTELAPLGSLLDRL 86 (257)
T ss_pred ----------E-E----c--C-CeEEEEEEecCCCcHHHHH
Confidence 0 0 0 0 4578999999999998653
No 95
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=30.86 E-value=1e+02 Score=32.42 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=32.7
Q ss_pred cchhhhcccCCCCccCcccc-cccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESSSA-FESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~~-f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
...++|+|+.|.+|.+.... -.+.+....++..|..- |..+=.| ++..+ +=+|.||++.+.+
T Consensus 90 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~--l~~lH~~--~i~H~----dl~p~Nil~~~~~ 152 (285)
T cd06648 90 ELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLAVLKA--LSFLHAQ--GVIHR----DIKSDSILLTSDG 152 (285)
T ss_pred eEEEEEeccCCCCHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHhC--CeecC----CCChhhEEEcCCC
Confidence 46899999999998764322 11222233333333222 2222222 23323 2379999997654
No 96
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=30.26 E-value=1.6e+02 Score=29.16 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=14.9
Q ss_pred ccchhhhcccCCCCccCc
Q 038745 246 SRCLFLMSYVHGSPLLES 263 (881)
Q Consensus 246 ~~~ll~M~yv~G~~l~~~ 263 (881)
..+.++|+|++|.+|.+.
T Consensus 70 ~~~~l~~e~~~~~~L~~~ 87 (253)
T cd05122 70 DELWIVMEFCSGGSLKDL 87 (253)
T ss_pred CeEEEEEecCCCCcHHHH
Confidence 357899999999998764
No 97
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=29.44 E-value=2.2e+02 Score=32.47 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=37.3
Q ss_pred hhhccchhhhcccCCCCccCcc-cccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCccch
Q 038745 243 LELSRCLFLMSYVHGSPLLESS-SAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKMASA 319 (881)
Q Consensus 243 l~~~~~ll~M~yv~G~~l~~~~-~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~~~~ 319 (881)
++-+|-..+||||.|.+|.... ..-++.+....+.+.+.... +++ =..| +=|..|||+++.+...
T Consensus 177 ~~~nRHaVvMe~ieG~eL~~~r~~~en~~~il~~il~~~~~~~------~~G-iVHG-----DlSefNIlV~~dg~~~ 242 (304)
T COG0478 177 IAWNRHAVVMEYIEGVELYRLRLDVENPDEILDKILEEVRKAY------RRG-IVHG-----DLSEFNILVTEDGDIV 242 (304)
T ss_pred cccccceeeeehcccceeecccCcccCHHHHHHHHHHHHHHHH------HcC-cccc-----CCchheEEEecCCCEE
Confidence 4556889999999999998866 23333332333333332221 110 0111 3478999999975443
No 98
>PLN02160 thiosulfate sulfurtransferase
Probab=29.24 E-value=73 Score=31.25 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=20.2
Q ss_pred HcCCeEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 038745 734 QTGGRVLVHCFEGRSRSATLVLAYLMLRKNFT 765 (881)
Q Consensus 734 ~~GGkVLVHC~aGISRSATVVIAYLMk~~gmS 765 (881)
..+..|+|||..| .||... +.+++..|++
T Consensus 79 ~~~~~IivyC~sG-~RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKA--TTELVAAGYK 107 (136)
T ss_pred CCCCcEEEECCCc-HHHHHH--HHHHHHcCCC
Confidence 4578999999999 577644 3444566654
No 99
>PRK05231 homoserine kinase; Provisional
Probab=28.94 E-value=1.5e+02 Score=32.04 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=21.9
Q ss_pred cchhhhcccCCCCccCcccccccHHHHHHHHHHHhhHH
Q 038745 247 RCLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVL 284 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l 284 (881)
+..+||+||+|.++... .....+++++.||++-
T Consensus 96 ~~~~l~~~l~G~~~~~~-----~~~~~~~~G~~LA~lH 128 (319)
T PRK05231 96 KPAAIVTFLEGKWPRAP-----TAAHCAEVGEMLARMH 128 (319)
T ss_pred EEEEEEEecCCCCCCCC-----CHHHHHHHHHHHHHHH
Confidence 46789999999986532 2333456667777665
No 100
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=28.63 E-value=32 Score=35.63 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=23.6
Q ss_pred chhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHh
Q 038745 248 CLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLM 285 (881)
Q Consensus 248 ~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~ 285 (881)
-+|||+||+|.+|.+...+........++++.|.++=-
T Consensus 67 ~~lv~e~i~G~~l~~~~~~~~~~~~~~~l~~~l~~lH~ 104 (244)
T cd05150 67 AWLLTSAVPGVPAAALWEELEPERLVDALAEALRRLHA 104 (244)
T ss_pred cEEEEEeeCCccHhHhhcccCHHHHHHHHHHHHHHHhc
Confidence 56799999999997654433333344445555555443
No 101
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=28.51 E-value=1.5e+02 Score=32.23 Aligned_cols=62 Identities=26% Similarity=0.323 Sum_probs=33.3
Q ss_pred cchhhhcccCCCCccCccc--ccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESSS--AFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~--~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
...++|||++|.+|.+.-. ...+.+.+..++..+-. +|..+ ++..-..+ +=.|.|||+.+.+
T Consensus 92 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~--aL~~L-H~~~ivH~-----dlkp~NIll~~~~ 155 (329)
T PTZ00263 92 RVYFLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVL--AFEYL-HSKDIIYR-----DLKPENLLLDNKG 155 (329)
T ss_pred EEEEEEcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHH--HHHHH-HHCCeeec-----CCCHHHEEECCCC
Confidence 4789999999999875321 12234434333333322 23322 22222222 2358999997654
No 102
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=28.23 E-value=1.9e+02 Score=31.30 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=33.0
Q ss_pred cchhhhcccCCCCccCcccc--cccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESSSA--FESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~~--f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
...++|||++|.+|.+.... ..+......++..+-.. |.. |++.-.+-- -+=+|+|||+.+.+
T Consensus 77 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~--l~~-lH~~~~ivH----~dlkp~Nil~~~~~ 141 (331)
T cd06649 77 EISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRG--LAY-LREKHQIMH----RDVKPSNILVNSRG 141 (331)
T ss_pred EEEEEeecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHH--HHH-HhhcCCEEc----CCCChhhEEEcCCC
Confidence 46799999999999764321 12333333444333222 222 222111111 13469999997754
No 103
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported
Probab=28.14 E-value=2.6e+02 Score=30.50 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=28.7
Q ss_pred eEEEEecCceEEEEEecCCCCCCCCCCcceEEEeecCcchh---hhhhH-HHHHHHHHhCCCCCc
Q 038745 139 LEVTVNSGGVVFFALFNQPGSDDAPPKEAAAVIKFSSSRMA---TQSER-LGYEFAKWLGVRTPQ 199 (881)
Q Consensus 139 ~~v~vnsgGvvf~~~f~~~~~~~~~~~e~a~ViK~~ssr~a---~qsE~-~~~ela~~lGv~~P~ 199 (881)
-.|..+..|..|.++.-. ..+.+-.|||+.+..-+ ...|. .-..|+..+.|.+|.
T Consensus 14 ~~~~~~~~g~~~~v~~i~------~~~g~~~VlR~p~~~~~~~~l~rE~~vL~~L~~~l~vpvP~ 72 (276)
T cd05152 14 ETLSLNESGLDFQVVFAK------DTDGVPWVLRIPRRPDVSERAAAEKRVLALVRKHLPVQVPD 72 (276)
T ss_pred CcceecCCcceeEEEEEE------cCCCCeEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 346666667655554321 12234788898864111 12233 333445556777775
No 104
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=27.84 E-value=84 Score=30.57 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCCCceeEEeccChhHHHHHHHHHHHHhhh------cccCccccc-cchHHHHHHhhh--------ccch
Q 038745 185 LGYEFAKWLGVRTPQARVIHNCSSEWLQIKEAAEKARATA------TSEGDEIGE-MTCSELLEALEL--------SRCL 249 (881)
Q Consensus 185 ~~~ela~~lGv~~P~~Rvv~~~s~ew~~i~~a~~~~~~~~------~~~~~~~~~-~~c~e~le~l~~--------~~~l 249 (881)
+-+++++.+||.+|..+++.+. .++.+.+.+....+ -..+.-+-. -+.+|+.+.+.. ...+
T Consensus 7 ~~~~~~~~~gv~~P~~~~~~~~----~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~~~~~~~ 82 (184)
T PF13535_consen 7 RMRELLKKAGVPVPKTRIVDSE----EELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSPLGNGPV 82 (184)
T ss_dssp HHHHHHHHHTS----EEEECSH----HHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS-HSSSE
T ss_pred HHHHHHHHcCcCCCCEEEECCH----HHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcccCCccE
Confidence 4578999999999999998864 34444444432211 111111111 134555554332 2358
Q ss_pred hhhcccCC
Q 038745 250 FLMSYVHG 257 (881)
Q Consensus 250 l~M~yv~G 257 (881)
++++||+|
T Consensus 83 ivqe~i~g 90 (184)
T PF13535_consen 83 IVQEYIPG 90 (184)
T ss_dssp EEEE---S
T ss_pred EEEEeeee
Confidence 99999997
No 105
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=27.25 E-value=1.7e+02 Score=31.62 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=32.3
Q ss_pred cchhhhcccCCCCccCcc--cccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESS--SAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~--~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
...|||||++|.+|.... ...-+...+..++..|-. +|.- |++-.=+.+ +=+|.|||+.+.+
T Consensus 69 ~~~lv~E~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~--aL~~-LH~~~ivH~-----Dlkp~NIll~~~~ 132 (323)
T cd05595 69 RLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVS--ALEY-LHSRDVVYR-----DIKLENLMLDKDG 132 (323)
T ss_pred EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH--HHHH-HHHCCeEec-----CCCHHHEEEcCCC
Confidence 467999999999985422 112233333333332222 2222 233322222 2469999997654
No 106
>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho
Probab=26.83 E-value=2.6e+02 Score=28.83 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=33.4
Q ss_pred cchhhhcccCCCCccCccc---ccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecC
Q 038745 247 RCLFLMSYVHGSPLLESSS---AFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADK 315 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~---~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~ 315 (881)
...++|||++|.+|.+... ..-+...+.+++..+-. +|..+ ++..-++.+ | +|+|||+.+.
T Consensus 68 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~--~l~~l-H~~~i~H~d-l----kp~nil~~~~ 131 (257)
T cd05115 68 ALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSM--GMKYL-EGKNFVHRD-L----AARNVLLVNQ 131 (257)
T ss_pred CeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHH--HHHHH-HhcCeeecc-c----chheEEEcCC
Confidence 3679999999999886432 12233333343333322 22333 333333322 3 6999999654
No 107
>PRK10593 hypothetical protein; Provisional
Probab=26.08 E-value=51 Score=36.19 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=23.5
Q ss_pred ccchhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHh
Q 038745 246 SRCLFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLM 285 (881)
Q Consensus 246 ~~~ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~ 285 (881)
.+.+||||||+|.++.+. . ......+..++.||+.|.
T Consensus 86 g~~~LVmE~i~G~~~~~~--~-~~~~~~~~l~~~l~~~La 122 (297)
T PRK10593 86 GPDVLLLERLRGVSVEAP--A-RTPERWEQLKDQIVEGLL 122 (297)
T ss_pred CCeEEEEeccCCEecCCC--C-CCHHHHHHHHHHHHHHHH
Confidence 347899999999999872 1 223334455555555554
No 108
>smart00221 STYKc Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.
Probab=25.92 E-value=2.7e+02 Score=27.11 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=34.7
Q ss_pred ccchhhhcccCCCCccCcccccc---cHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecC
Q 038745 246 SRCLFLMSYVHGSPLLESSSAFE---SRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADK 315 (881)
Q Consensus 246 ~~~ll~M~yv~G~~l~~~~~~f~---~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~ 315 (881)
.++.++|+|++|.+|.+...... +......++..+-+.+ . .|++...+.+ +=++.||++.+.
T Consensus 70 ~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l--~-~lh~~~i~h~-----di~~~ni~v~~~ 134 (225)
T smart00221 70 EPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEAL--E-YLHSLGIVHR-----DLKPENILLGMD 134 (225)
T ss_pred CceEEEEeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHH--H-HHHhCCeecC-----CCCHHHEEEcCC
Confidence 56889999999998877643322 2222233333332222 2 2444433332 456889999875
No 109
>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom
Probab=25.84 E-value=1.7e+02 Score=29.78 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=33.7
Q ss_pred cchhhhcccCCCCccCcccccc----cHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESSSAFE----SRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~~f~----~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
.+.++|||++|.+|.+...... +.....+++..+- -+|..+=.|+ +..+ +=+|.|||+++.+
T Consensus 76 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~--~al~~lH~~~--i~h~----dl~~~nilv~~~~ 141 (261)
T cd05148 76 PVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVA--EGMAYLEEQN--SIHR----DLAARNILVGEDL 141 (261)
T ss_pred CeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHH--HHHHHHHHCC--eecc----ccCcceEEEcCCc
Confidence 4689999999999987653321 2222222222221 2233333333 2212 3468999998654
No 110
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=25.51 E-value=35 Score=38.87 Aligned_cols=60 Identities=30% Similarity=0.402 Sum_probs=37.4
Q ss_pred ccchhhhcccCCCCccCcc---cccccHHH---HHHHHHHHhhHHhhhhhhcCCCCCCccccccC-CCCCceeeecCccc
Q 038745 246 SRCLFLMSYVHGSPLLESS---SAFESRET---AEKTAAALGRVLMLDLVIRNEDRLPCRQLRWR-GNPANLLLADKMAS 318 (881)
Q Consensus 246 ~~~ll~M~yv~G~~l~~~~---~~f~~~~~---~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~Wr-GN~~Nll~~~~~~~ 318 (881)
+.-.+||+||+|+.|+..- ..|..... |.+++-||--+=-+| |..| =-|+|||+...+-.
T Consensus 117 ~~lymvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~-------------iiYRDLKPENiLlD~~G~i 183 (355)
T KOG0616|consen 117 SNLYMVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLD-------------IIYRDLKPENLLLDQNGHI 183 (355)
T ss_pred CeEEEEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcC-------------eeeccCChHHeeeccCCcE
Confidence 3467999999999987643 45554442 233333343333333 4444 57999999988743
No 111
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=25.51 E-value=1.3e+02 Score=27.04 Aligned_cols=28 Identities=32% Similarity=0.623 Sum_probs=18.6
Q ss_pred cCCeEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 038745 735 TGGRVLVHCFEGRSRSATLVLAYLMLRKNFT 765 (881)
Q Consensus 735 ~GGkVLVHC~aGISRSATVVIAYLMk~~gmS 765 (881)
.+..|+|+|..| .||+.. +..+...|++
T Consensus 57 ~~~~vv~~c~~g-~rs~~~--~~~l~~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV--AQWLLRQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH--HHHHHHcCCc
Confidence 468999999998 476443 3344456654
No 112
>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]
Probab=24.67 E-value=1.6e+02 Score=33.58 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=65.8
Q ss_pred cceEEEEecCceEEEEEecCCCCCCCCCCcceEEEeecC--cchhhhhhHHHH---HHHHHhCCCCCceeEEeccChhHH
Q 038745 137 KALEVTVNSGGVVFFALFNQPGSDDAPPKEAAAVIKFSS--SRMATQSERLGY---EFAKWLGVRTPQARVIHNCSSEWL 211 (881)
Q Consensus 137 ~~~~v~vnsgGvvf~~~f~~~~~~~~~~~e~a~ViK~~s--sr~a~qsE~~~~---ela~~lGv~~P~~Rvv~~~s~ew~ 211 (881)
...+|.+-|||..+=.++-. .+...-|+. .| ...+-+-+..+. .|+.++.+.+|..+++..+.++-
T Consensus 26 ~~~~v~~~~~G~sn~t~~~~-------~~~~~~vlR-~P~~~~~~~~~~~~~re~~~i~~l~~~~vP~p~~~~~~~~~~- 96 (321)
T COG3173 26 GLLIVEEISGGWSNDTFRLG-------DTGQKYVLR-KPPRGDPVESAHDEKREYRVIAALLDVDVPVPRAFGLCGEGY- 96 (321)
T ss_pred CCceeeeccCCcccceEEEe-------cCCceEEEe-cCCccccchhhhHHHhHHHHHHHhcCCCCCCcccccccccCC-
Confidence 34567777999887555533 113445555 33 233333344443 35677788999998887664321
Q ss_pred HHHHHHHHHHhhhcccCccccccchHHHHHHhhhccchhhhcccCCCCccCcccccccH-HHHHHHHHHHhhHHhhhhhh
Q 038745 212 QIKEAAEKARATATSEGDEIGEMTCSELLEALELSRCLFLMSYVHGSPLLESSSAFESR-ETAEKTAAALGRVLMLDLVI 290 (881)
Q Consensus 212 ~i~~a~~~~~~~~~~~~~~~~~~~c~e~le~l~~~~~ll~M~yv~G~~l~~~~~~f~~~-~~~~~~a~~LGr~l~lD~~l 290 (881)
+-.++.||+||.|-.+.....+-... .++. ++||++|. -|
T Consensus 97 ---------------------------------~g~pf~v~~~veGe~~~~~~~~~~~~~~~~~---~~l~~~La---~L 137 (321)
T COG3173 97 ---------------------------------LGTPFYVMEWVEGEVVWSALPPESLGRQFAL---DALADFLA---EL 137 (321)
T ss_pred ---------------------------------CCCceEEEEEecceeccCcCCcccchHHHHH---HHHHHHHH---HH
Confidence 23589999999997555544333333 3332 47888775 35
Q ss_pred cCCC
Q 038745 291 RNED 294 (881)
Q Consensus 291 ~N~D 294 (881)
++-|
T Consensus 138 H~id 141 (321)
T COG3173 138 HSID 141 (321)
T ss_pred hCCC
Confidence 6666
No 113
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=24.66 E-value=2.2e+02 Score=30.21 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=32.3
Q ss_pred cchhhhcccCCCCccCccc-ccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESSS-AFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~-~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
.+.+||+|++|.+|.+... ...+.....+++..|-. .|+.+ ++.. +..+ +=+|.|||+.+.+
T Consensus 90 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~--~L~~L-H~~~-i~H~----dL~p~Nili~~~~ 152 (297)
T cd06656 90 ELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQ--ALDFL-HSNQ-VIHR----DIKSDNILLGMDG 152 (297)
T ss_pred EEEEeecccCCCCHHHHHHhCCCCHHHHHHHHHHHHH--HHHHH-HHCC-cccC----CCCHHHEEECCCC
Confidence 4789999999999987532 11222222233222221 22222 2221 2211 3479999997653
No 114
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=24.64 E-value=1.6e+02 Score=29.75 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=34.6
Q ss_pred cchhhhcccCCCCccCccc---ccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESSS---AFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~---~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
...++|+|+.|.+|.+... ...+......++..+ +-.|+.+-+|+ +..+ +=+|+|||+...+
T Consensus 66 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~lH~~~--i~h~----di~p~nili~~~~ 130 (251)
T cd05041 66 PIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDA--AAGMEYLESKN--CIHR----DLAARNCLVGENN 130 (251)
T ss_pred CeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHH--HHHHHHHHhCC--Eehh----hcCcceEEEcCCC
Confidence 3578999999999975431 122333233333332 23455555553 3322 2358999997653
No 115
>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea
Probab=23.95 E-value=2.5e+02 Score=28.90 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=32.5
Q ss_pred ccchhhhcccCCCCccCcc----cccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 246 SRCLFLMSYVHGSPLLESS----SAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 246 ~~~ll~M~yv~G~~l~~~~----~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
..+.++|+|+ |.+|.+.. .++. ...+..++..+-..|. .|++..-..++ =+|.||++.+++
T Consensus 72 ~~~~~v~e~~-~~~L~~~~~~~~~~~~-~~~~~~~~~~i~~~l~---~lH~~~i~H~d-----l~p~ni~~~~~~ 136 (286)
T cd07832 72 SGFVLVMEYM-PSDLSEVLRDEERPLP-EAQVKSYMRMLLKGVA---YMHANGIMHRD-----LKPANLLISADG 136 (286)
T ss_pred CeeEEEeccc-CCCHHHHHHhcCCCCC-HHHHHHHHHHHHHHHH---HHHHCCeecCC-----cCHHHEEEcCCC
Confidence 4578999999 99887642 2222 3333333333222221 12333333322 258999998754
No 116
>PRK06849 hypothetical protein; Provisional
Probab=23.73 E-value=64 Score=36.45 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=40.5
Q ss_pred HHHHHHhCCCCCceeEEeccChhHHHHHHHHHHH-H-h-----hhcccCccccccchHHHHHHhhhcc--chhhhcccCC
Q 038745 187 YEFAKWLGVRTPQARVIHNCSSEWLQIKEAAEKA-R-A-----TATSEGDEIGEMTCSELLEALELSR--CLFLMSYVHG 257 (881)
Q Consensus 187 ~ela~~lGv~~P~~Rvv~~~s~ew~~i~~a~~~~-~-~-----~~~~~~~~~~~~~c~e~le~l~~~~--~ll~M~yv~G 257 (881)
+++++-+||.+|...++.+.. ++.++..+. . . .....+..+-...|.+.++++..+. =++++|||+|
T Consensus 121 ~~~~~~~GipvP~t~~v~~~~----~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~~~~~~~~ivQe~I~G 196 (389)
T PRK06849 121 AEQARSLGLSVPKTYLITDPE----AIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKELPISKDNPWVMQEFIQG 196 (389)
T ss_pred HHHHHHcCCCCCCEEEeCCHH----HHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhcccccCCCCCeEEEEEecC
Confidence 678999999999999987632 233333221 0 0 0011222233345556666654432 3699999999
Q ss_pred CC
Q 038745 258 SP 259 (881)
Q Consensus 258 ~~ 259 (881)
..
T Consensus 197 ~e 198 (389)
T PRK06849 197 KE 198 (389)
T ss_pred Ce
Confidence 64
No 117
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=23.63 E-value=93 Score=27.95 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=19.0
Q ss_pred HcCCeEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 038745 734 QTGGRVLVHCFEGRSRSATLVLAYLMLRKNFT 765 (881)
Q Consensus 734 ~~GGkVLVHC~aGISRSATVVIAYLMk~~gmS 765 (881)
..+..|+|+|..|. ||.. ++. .++..|++
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~-~L~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAE-LLAERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHH-HHHHcCce
Confidence 35689999999995 7643 333 34566664
No 118
>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g
Probab=23.32 E-value=2.6e+02 Score=29.27 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.2
Q ss_pred cchhhhcccCCCCccC
Q 038745 247 RCLFLMSYVHGSPLLE 262 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~ 262 (881)
...++|||++|.+|..
T Consensus 67 ~~~lv~e~~~~g~L~~ 82 (280)
T cd05608 67 DLCLVMTIMNGGDLRY 82 (280)
T ss_pred eEEEEEeCCCCCCHHH
Confidence 3678999999999853
No 119
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=23.17 E-value=2.4e+02 Score=29.84 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=22.1
Q ss_pred eEEEeecCcc---hhhhhhHHHHHHHHHhCCCCCceeEE
Q 038745 168 AAVIKFSSSR---MATQSERLGYEFAKWLGVRTPQARVI 203 (881)
Q Consensus 168 a~ViK~~ssr---~a~qsE~~~~ela~~lGv~~P~~Rvv 203 (881)
-.|+|+.+.. ..++.|.=.-..+..+||.+|.+.-+
T Consensus 24 ~~VlR~~~~~~~~~~i~~E~~~l~~l~~~glpvP~~~~~ 62 (226)
T TIGR02172 24 KWMLKLYNPGFDKETIKREFDASRKVFSLGIPTPHPFDL 62 (226)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCCCceEEE
Confidence 3578877652 23455655555555778888877544
No 120
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=22.87 E-value=88 Score=35.56 Aligned_cols=130 Identities=23% Similarity=0.354 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcchH----HHHHHHHHHhcCCCHHHHHHHHHHhCCCccCCHHHHHHHHH
Q 038745 717 NISSIFEEASDFIDHVEQTGGRVLVHCFEGRSRSA----TLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLE 792 (881)
Q Consensus 717 dI~~~FdeA~eFIdeal~~GGkVLVHC~aGISRSA----TVVIAYLMk~~gmSLeEAl~~VKk~RP~I~PN~GF~kQLle 792 (881)
-|.+.|+.+-+|+-..-..+|-. |-|--|.--++ |.|--|| +.+ -+. +|+..++ .|+.++..+
T Consensus 96 ii~~lie~~~e~LT~nn~p~gqC-vICLygfa~~~~ft~T~C~Hy~-H~~--Cla---Ryl~~~~------~~lrqe~q~ 162 (368)
T KOG4445|consen 96 IICQLIEHCSEFLTENNHPNGQC-VICLYGFASSPAFTVTACDHYM-HFA--CLA---RYLTECL------TGLRQEIQD 162 (368)
T ss_pred hhHHHHHHHHHHcccCCCCCCce-EEEEEeecCCCceeeehhHHHH-HHH--HHH---HHHHHHH------HHHHHHHHH
Confidence 34555666666654433334433 45777776665 3333333 221 122 2333333 255566655
Q ss_pred HHHHhcCCccceeeeccCCcccCCccCCCCCCCCchhhhhccc-cCCCCCCCCCCchhhHHHHHHHHHhccccCC
Q 038745 793 LDRKLHGEVSMEWQQRKPMMKVCPICGKNAGLSSSSLKLHLQK-SHKKLSSGSVDSAMTMEIQKALDALKISRGG 866 (881)
Q Consensus 793 yEkkL~gk~Svew~q~kP~~~vCpic~k~~glSsSsL~~hl~k-~~~~iSs~svDS~mtmeiQk~~~~lKi~~gG 866 (881)
.++.++.. +.+...+||+|..-.+.-..+|+--..+ .....-.++-.+..+|+.++++-...-.|||
T Consensus 163 ~~~~~qh~-------~~~~eavcpVcre~i~~e~~slk~a~~Pt~~l~~~~~~~eslrq~~~r~~ly~~qk~rg~ 230 (368)
T KOG4445|consen 163 AQKERQHM-------KEQVEAVCPVCRERIKIEENSLKIAEFPTYPMELYQPSAESLRQQEERKRLYQRQQERGG 230 (368)
T ss_pred HHHHHHHh-------hhhHhhhhhHhhhhccccccceeccCCCccccccCcccHHHHHHHHHHHHHHHHHhhcCc
Confidence 55533211 1233457999988777666666532221 1222233344455667777765545555665
No 121
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=22.43 E-value=1.1e+02 Score=28.42 Aligned_cols=30 Identities=13% Similarity=-0.102 Sum_probs=20.5
Q ss_pred HcCCeEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 038745 734 QTGGRVLVHCFEGRSRSATLVLAYLMLRKNFT 765 (881)
Q Consensus 734 ~~GGkVLVHC~aGISRSATVVIAYLMk~~gmS 765 (881)
..+..|+|+|..| +++++.++. +++..|++
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~-~l~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWW-TLRYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHH-HHHHcCCC
Confidence 3578999999998 566565544 44566654
No 122
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=22.34 E-value=3.3e+02 Score=28.22 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=14.8
Q ss_pred cchhhhcccCCCCccCcc
Q 038745 247 RCLFLMSYVHGSPLLESS 264 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~ 264 (881)
..++||||++|.+|.+..
T Consensus 76 ~~~lv~e~~~~~~L~~~i 93 (277)
T cd06640 76 KLWIIMEYLGGGSALDLL 93 (277)
T ss_pred EEEEEEecCCCCcHHHHH
Confidence 378999999999987643
No 123
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=22.19 E-value=3.1e+02 Score=27.80 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=32.3
Q ss_pred cchhhhcccCCCCccCcc-------cccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESS-------SAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~-------~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
...++|||++|.+|.+.. ..+ +.+....++..+-..+ .. |++ -.+..+.| .|.||++++.+
T Consensus 76 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l--~~-lh~-~~i~h~dl----~p~nil~~~~~ 143 (267)
T cd08224 76 ELNIVLELADAGDLSRMIKHFKKQKRLI-PERTIWKYFVQLCSAL--EH-MHS-KRIMHRDI----KPANVFITATG 143 (267)
T ss_pred eEEEEEecCCCCCHHHHHHHhcccCCCc-CHHHHHHHHHHHHHHH--HH-HHh-CCEecCCc----ChhhEEECCCC
Confidence 468999999999986532 222 2222333333322222 11 222 13333323 58999998764
No 124
>TIGR02721 ycfN_thiK thiamine kinase. Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.
Probab=22.12 E-value=60 Score=34.13 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=26.9
Q ss_pred hhhhcccCCCCccCcccccccHHHHHHHHHHHhhHHhhh
Q 038745 249 LFLMSYVHGSPLLESSSAFESRETAEKTAAALGRVLMLD 287 (881)
Q Consensus 249 ll~M~yv~G~~l~~~~~~f~~~~~~~~~a~~LGr~l~lD 287 (881)
.+||+||+|.++.... +......+++|+.|.++=-++
T Consensus 64 ~~v~e~i~G~~~~~~~--~~~~~~~~~la~~l~~lH~~~ 100 (256)
T TIGR02721 64 WLLVEWLEGEVITLDQ--FVALDLLLELAALLHQLHSQP 100 (256)
T ss_pred EEEEEeccCccccccc--ccCchhHHHHHHHHHHHhCCC
Confidence 3789999999987632 233455778888888886654
No 125
>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica
Probab=21.76 E-value=1.9e+02 Score=31.50 Aligned_cols=62 Identities=19% Similarity=0.171 Sum_probs=33.0
Q ss_pred cchhhhcccCCCCccCccc--ccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESSS--AFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~--~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
...|||||++|..|.+... ..-+...+..++..+-. +|+.+ ++..=+.+ +=+|+|||+...+
T Consensus 75 ~~~lv~E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~--aL~~l-H~~~ivH~-----Dlkp~NIl~~~~~ 138 (364)
T cd05599 75 YLYLIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETIL--AIDSI-HKLGYIHR-----DIKPDNLLLDAKG 138 (364)
T ss_pred eEEEEECCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHH--HHHHH-HHCCeEec-----cCCHHHeEECCCC
Confidence 4679999999999876421 12233334333333222 22222 22222222 3468999998765
No 126
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=21.28 E-value=2.8e+02 Score=28.81 Aligned_cols=73 Identities=23% Similarity=0.377 Sum_probs=46.3
Q ss_pred CCeeeeCCeEECChhhhcCHHH--HHHcCceEEEEeeccCcCCCCCCCCCCceEEeeecCCCCCCcHHHHHHHHHHHHHH
Q 038745 654 RPSSITSSLFIGGALAARSVYT--LKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDH 731 (881)
Q Consensus 654 ~PSEIlP~LYLGs~~aA~n~e~--LK~lGIThVLNV~seei~~~~~~~p~gf~Yl~IPV~Ds~~edI~~~FdeA~eFIde 731 (881)
+|+-+.|++|+-+..+. +.+. |++.||+.||-=-.+.+ .+ |= ...+ -++..+++++
T Consensus 13 ~p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li~DkDNTL------~~--------~~----~~~i---~~~~~~~~~~ 70 (168)
T PF09419_consen 13 NPSLLLPHLYVPSIRDI-DFEANHLKKKGIKALIFDKDNTL------TP--------PY----EDEI---PPEYAEWLNE 70 (168)
T ss_pred CccccCCCEEcCChhhC-CcchhhhhhcCceEEEEcCCCCC------CC--------CC----cCcC---CHHHHHHHHH
Confidence 58889999999888876 6677 99999999983211111 10 00 1111 1345566777
Q ss_pred HHHcCC--eEEEEcCC-CCc
Q 038745 732 VEQTGG--RVLVHCFE-GRS 748 (881)
Q Consensus 732 al~~GG--kVLVHC~a-GIS 748 (881)
.++.++ +|+|-+.. |.+
T Consensus 71 l~~~~~~~~v~IvSNsaGs~ 90 (168)
T PF09419_consen 71 LKKQFGKDRVLIVSNSAGSS 90 (168)
T ss_pred HHHHCCCCeEEEEECCCCcc
Confidence 777665 48888875 543
No 127
>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=21.03 E-value=3.7e+02 Score=27.99 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.2
Q ss_pred cchhhhcccCCCCccCc
Q 038745 247 RCLFLMSYVHGSPLLES 263 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~ 263 (881)
...++|||++|.+|.+.
T Consensus 82 ~~~lv~e~~~g~~L~~~ 98 (284)
T cd05079 82 GIKLIMEFLPSGSLKEY 98 (284)
T ss_pred ceEEEEEccCCCCHHHH
Confidence 36799999999999754
No 128
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=20.98 E-value=98 Score=31.36 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=22.0
Q ss_pred cCCeEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 038745 735 TGGRVLVHCFEGRSRSATLVLAYLMLRKNFT 765 (881)
Q Consensus 735 ~GGkVLVHC~aGISRSATVVIAYLMk~~gmS 765 (881)
.+..|+|+|..|..||.. ++++++..|++
T Consensus 115 ~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 568999999998877765 56666777754
No 129
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=20.94 E-value=45 Score=40.13 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=76.3
Q ss_pred ceEEEEEecCCCCCCCCCCcceEEEeecCcchhhhhh---HHHHHHHHHhCCCCCceeEEec---c-------ChhHHHH
Q 038745 147 GVVFFALFNQPGSDDAPPKEAAAVIKFSSSRMATQSE---RLGYEFAKWLGVRTPQARVIHN---C-------SSEWLQI 213 (881)
Q Consensus 147 Gvvf~~~f~~~~~~~~~~~e~a~ViK~~ssr~a~qsE---~~~~ela~~lGv~~P~~Rvv~~---~-------s~ew~~i 213 (881)
|=|.-|-..+ -..|+||+-.=-+.-+-+ ..-+.+|+++....|..|-.+- - -.|=.-.
T Consensus 139 aQVH~A~L~s---------G~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~ 209 (517)
T COG0661 139 AQVHRAVLKS---------GEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYR 209 (517)
T ss_pred hhheeEEecC---------CCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHH
Confidence 7777776543 347888875433331111 2346788888888898663321 1 1111111
Q ss_pred HHHH--HHHHhhhcccCccccccchHHHHHHhhhccchhhhcccCCCCccCcc----cccccHHHHHHHHHHHhhHHhhh
Q 038745 214 KEAA--EKARATATSEGDEIGEMTCSELLEALELSRCLFLMSYVHGSPLLESS----SAFESRETAEKTAAALGRVLMLD 287 (881)
Q Consensus 214 ~~a~--~~~~~~~~~~~~~~~~~~c~e~le~l~~~~~ll~M~yv~G~~l~~~~----~~f~~~~~~~~~a~~LGr~l~lD 287 (881)
++|. ++.++.+. +.-.+.+=++...+- ++=.|+||||+|.++.+-. .-++.. .+|+. |--..|.
T Consensus 210 ~EA~n~~~~~~nf~----~~~~v~VP~V~we~t-~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k----~ia~~-~~~~f~~ 279 (517)
T COG0661 210 REAANAERFRENFK----DDPDVYVPKVYWEYT-TRRVLTMEWIDGIKISDIAALKSAGIDRK----ELAEL-LVRAFLR 279 (517)
T ss_pred HHHHHHHHHHHHcC----CCCCeEeceeehhcc-CCcEEEEEeeCCEecccHHHHHhcCCCHH----HHHHH-HHHHHHH
Confidence 2221 11111111 001122222233222 2357999999999998753 223333 33333 3333456
Q ss_pred hhhcCCCCCCccccccCCCCCceeeecCccch
Q 038745 288 LVIRNEDRLPCRQLRWRGNPANLLLADKMASA 319 (881)
Q Consensus 288 ~~l~N~DRlpc~~l~WrGN~~Nll~~~~~~~~ 319 (881)
.+++ -.=++|+ =.|+||++...+..+
T Consensus 280 q~~~-dgffHaD-----pHpGNi~v~~~g~i~ 305 (517)
T COG0661 280 QLLR-DGFFHAD-----PHPGNILVRSDGRIV 305 (517)
T ss_pred HHHh-cCccccC-----CCccceEEecCCcEE
Confidence 6666 3345655 478999999986554
No 130
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=20.93 E-value=1e+02 Score=28.79 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=24.8
Q ss_pred EEEcCCCCcchHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038745 740 LVHCFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRV 776 (881)
Q Consensus 740 LVHC~aGISRSATVVIAYLMk~~gmSLeEAl~~VKk~ 776 (881)
..||.+ -+..+- +|.++|...++++.+|++++.+.
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHH
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHH
Confidence 688984 456654 58888999999999999999764
No 131
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=20.79 E-value=3.9e+02 Score=26.94 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=34.4
Q ss_pred ccchhhhcccCCCCccCcc---cccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 246 SRCLFLMSYVHGSPLLESS---SAFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 246 ~~~ll~M~yv~G~~l~~~~---~~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
..+.++|||++|.+|.+.. ....+......++..+-. .|..+ ++. ++..+.| +|.||++.+.+
T Consensus 71 ~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~--~l~~l-h~~-~i~H~dl----~~~ni~~~~~~ 136 (256)
T cd06612 71 TDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLK--GLEYL-HSN-KKIHRDI----KAGNILLNEEG 136 (256)
T ss_pred CcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHH--HHHHH-HHC-CcccCCC----CcceEEECCCC
Confidence 3478999999999987642 223344434344333322 22222 222 2333323 68999997664
No 132
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=20.64 E-value=1.6e+02 Score=28.08 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=21.7
Q ss_pred HHcCCeEEEEcCCCCcchHHHHHHHHHHhcCCC
Q 038745 733 EQTGGRVLVHCFEGRSRSATLVLAYLMLRKNFT 765 (881)
Q Consensus 733 l~~GGkVLVHC~aGISRSATVVIAYLMk~~gmS 765 (881)
+.++..|+|+|..|-.||+. ++++++..|+.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~--a~~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQS--LAWLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeCCCCccHHH--HHHHHHHcCCc
Confidence 44678999999865567654 34777777763
No 133
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=20.15 E-value=2.5e+02 Score=30.60 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=32.0
Q ss_pred cchhhhcccCCCCccCccc--ccccHHHHHHHHHHHhhHHhhhhhhcCCCCCCccccccCCCCCceeeecCc
Q 038745 247 RCLFLMSYVHGSPLLESSS--AFESRETAEKTAAALGRVLMLDLVIRNEDRLPCRQLRWRGNPANLLLADKM 316 (881)
Q Consensus 247 ~~ll~M~yv~G~~l~~~~~--~f~~~~~~~~~a~~LGr~l~lD~~l~N~DRlpc~~l~WrGN~~Nll~~~~~ 316 (881)
...|+|||++|.+|.+... ...+......++..+-. .|.- |++.-.+-.+ +=+|+|||+.+.+
T Consensus 77 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~--~l~~-lH~~~~ivH~----dlkp~Nili~~~~ 141 (333)
T cd06650 77 EISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIK--GLTY-LREKHKIMHR----DVKPSNILVNSRG 141 (333)
T ss_pred EEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH--HHHH-HHhcCCEEec----CCChhhEEEcCCC
Confidence 4779999999999876421 11223333333322211 2222 2221112222 3369999997654
Done!