Query 038746
Match_columns 147
No_of_seqs 173 out of 1434
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:53:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.6 3.8E-15 8.2E-20 121.1 6.0 111 35-146 93-275 (419)
2 KOG4341 F-box protein containi 99.5 1.7E-14 3.7E-19 120.9 4.2 101 43-146 74-205 (483)
3 PF12937 F-box-like: F-box-lik 99.3 3.7E-13 8.1E-18 80.7 0.6 44 41-84 1-46 (47)
4 smart00256 FBOX A Receptor for 98.8 3.3E-09 7.2E-14 60.8 1.9 37 44-80 1-39 (41)
5 PF00646 F-box: F-box domain; 98.5 3.7E-08 8E-13 58.7 1.6 35 41-75 3-37 (48)
6 KOG4341 F-box protein containi 98.2 3.5E-07 7.5E-12 77.4 1.3 51 93-146 181-231 (483)
7 KOG1947 Leucine rich repeat pr 98.1 5.5E-06 1.2E-10 69.2 4.9 53 92-147 259-311 (482)
8 KOG2997 F-box protein FBX9 [Ge 97.8 8.4E-06 1.8E-10 66.9 1.8 61 23-83 87-156 (366)
9 KOG0281 Beta-TrCP (transducin 97.7 5.5E-06 1.2E-10 68.9 -0.6 47 38-84 72-124 (499)
10 KOG1947 Leucine rich repeat pr 97.6 8.6E-05 1.9E-09 62.0 4.3 50 95-147 236-285 (482)
11 smart00367 LRR_CC Leucine-rich 97.5 5.1E-05 1.1E-09 39.7 1.1 18 130-147 1-18 (26)
12 smart00367 LRR_CC Leucine-rich 97.4 0.00017 3.6E-09 37.7 2.5 25 101-128 1-25 (26)
13 KOG3864 Uncharacterized conser 97.2 0.00019 4.2E-09 55.8 2.1 46 98-146 121-166 (221)
14 KOG2120 SCF ubiquitin ligase, 96.5 0.0023 5.1E-08 53.0 2.9 49 93-145 304-352 (419)
15 PLN03215 ascorbic acid mannose 96.3 0.0029 6.2E-08 53.4 2.7 35 42-76 5-40 (373)
16 KOG3864 Uncharacterized conser 96.2 0.002 4.4E-08 50.2 1.4 47 94-144 143-189 (221)
17 PF12799 LRR_4: Leucine Rich r 95.7 0.0073 1.6E-07 35.4 1.7 38 102-146 1-38 (44)
18 KOG0274 Cdc4 and related F-box 94.8 0.0093 2E-07 52.5 0.6 40 36-75 103-142 (537)
19 PF13516 LRR_6: Leucine Rich r 94.7 0.03 6.5E-07 28.3 2.0 24 101-128 1-24 (24)
20 cd00116 LRR_RI Leucine-rich re 94.4 0.065 1.4E-06 42.5 4.5 44 97-145 216-263 (319)
21 PF13013 F-box-like_2: F-box-l 93.3 0.076 1.7E-06 37.4 2.5 29 41-69 22-50 (109)
22 cd00116 LRR_RI Leucine-rich re 92.9 0.19 4.1E-06 39.8 4.6 43 99-146 190-235 (319)
23 KOG3665 ZYG-1-like serine/thre 91.8 0.2 4.4E-06 45.6 4.0 50 92-146 138-187 (699)
24 PF13504 LRR_7: Leucine rich r 91.0 0.17 3.7E-06 23.6 1.5 14 131-145 1-14 (17)
25 KOG3926 F-box proteins [Amino 88.4 0.15 3.3E-06 41.5 0.3 55 28-83 190-247 (332)
26 smart00368 LRR_RI Leucine rich 88.3 0.65 1.4E-05 24.3 2.6 25 102-130 2-26 (28)
27 PF13855 LRR_8: Leucine rich r 85.9 0.055 1.2E-06 33.1 -2.9 42 96-142 19-60 (61)
28 KOG2739 Leucine-rich acidic nu 85.3 0.42 9.1E-06 38.5 1.2 36 102-140 65-100 (260)
29 PF00560 LRR_1: Leucine Rich R 84.2 0.38 8.1E-06 23.8 0.3 13 132-145 1-13 (22)
30 PF09372 PRANC: PRANC domain; 83.9 1.2 2.6E-05 30.1 2.8 26 39-64 70-95 (97)
31 KOG3207 Beta-tubulin folding c 79.3 1.4 2.9E-05 38.4 2.1 47 94-145 164-210 (505)
32 KOG2982 Uncharacterized conser 78.8 1.9 4.2E-05 36.1 2.8 46 94-144 63-109 (418)
33 KOG3207 Beta-tubulin folding c 77.6 1.8 3.8E-05 37.7 2.3 38 100-141 195-232 (505)
34 KOG1909 Ran GTPase-activating 73.8 3.8 8.2E-05 34.7 3.2 16 126-141 265-280 (382)
35 PF06881 Elongin_A: RNA polyme 69.8 3.4 7.4E-05 28.6 1.9 44 40-83 3-46 (109)
36 PLN00113 leucine-rich repeat r 67.7 5.5 0.00012 36.9 3.2 44 94-141 85-128 (968)
37 KOG1909 Ran GTPase-activating 67.1 6.3 0.00014 33.4 3.2 44 94-141 205-251 (382)
38 PF14580 LRR_9: Leucine-rich r 63.7 4.8 0.0001 30.4 1.8 14 44-57 4-17 (175)
39 PHA03100 ankyrin repeat protei 63.2 7.2 0.00016 32.9 3.0 30 39-68 446-475 (480)
40 KOG3665 ZYG-1-like serine/thre 62.7 3.9 8.4E-05 37.4 1.2 31 80-110 151-181 (699)
41 PHA02875 ankyrin repeat protei 54.9 9 0.00019 31.8 2.1 26 39-64 385-410 (413)
42 PF07723 LRR_2: Leucine Rich R 50.9 11 0.00024 19.3 1.3 26 103-131 1-26 (26)
43 PHA02989 ankyrin repeat protei 48.1 16 0.00034 31.5 2.6 28 39-66 457-484 (494)
44 PHA03095 ankyrin-like protein; 45.2 21 0.00046 29.9 2.9 23 42-64 443-465 (471)
45 PLN03210 Resistant to P. syrin 44.9 13 0.00028 35.8 1.7 42 99-145 866-907 (1153)
46 KOG2739 Leucine-rich acidic nu 44.9 11 0.00024 30.4 1.1 44 94-142 83-127 (260)
47 PLN03210 Resistant to P. syrin 43.7 21 0.00046 34.4 2.9 15 129-143 679-693 (1153)
48 PLN03150 hypothetical protein; 42.4 20 0.00043 32.2 2.4 13 129-141 488-500 (623)
49 PHA02878 ankyrin repeat protei 40.2 27 0.00058 29.8 2.8 25 39-63 445-469 (477)
50 PHA02798 ankyrin-like protein; 36.7 30 0.00065 29.7 2.5 25 39-63 462-486 (489)
51 PLN00113 leucine-rich repeat r 36.4 28 0.00062 32.3 2.5 13 98-110 160-172 (968)
52 smart00370 LRR Leucine-rich re 34.2 39 0.00085 16.6 1.8 11 131-141 2-12 (26)
53 smart00369 LRR_TYP Leucine-ric 34.2 39 0.00085 16.6 1.8 11 131-141 2-12 (26)
54 KOG2502 Tub family proteins [G 31.6 72 0.0016 27.0 3.9 46 40-85 44-103 (355)
55 KOG0618 Serine/threonine phosp 31.2 25 0.00055 33.6 1.2 36 102-142 452-487 (1081)
56 COG5238 RNA1 Ran GTPase-activa 28.3 99 0.0021 25.9 4.1 47 93-141 83-130 (388)
57 KOG1859 Leucine-rich repeat pr 27.7 22 0.00048 33.4 0.2 12 99-110 206-217 (1096)
58 KOG3763 mRNA export factor TAP 27.2 59 0.0013 29.3 2.8 45 94-141 210-254 (585)
59 smart00446 LRRcap occurring C- 24.2 66 0.0014 16.7 1.6 16 125-140 7-22 (26)
60 PLN03150 hypothetical protein; 24.1 49 0.0011 29.7 1.8 43 94-141 434-476 (623)
61 COG5238 RNA1 Ran GTPase-activa 23.2 53 0.0012 27.5 1.7 39 99-141 211-252 (388)
62 KOG0426 Ubiquitin-protein liga 21.6 42 0.00092 24.5 0.7 59 15-73 75-146 (165)
63 PHA02876 ankyrin repeat protei 21.4 84 0.0018 28.2 2.7 25 39-63 654-678 (682)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.8e-15 Score=121.10 Aligned_cols=111 Identities=25% Similarity=0.407 Sum_probs=79.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC--CCcceeeeccchh---h----h---------------
Q 038746 35 DKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLSLNAQS---E----I--------------- 90 (147)
Q Consensus 35 ~~~~~~~~~LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~--~~lw~~l~l~~~~---~----~--------------- 90 (147)
.++.. ++.||||+++.||+.|..++|.+++.|||+||+++ ..+|+.+++.... . +
T Consensus 93 npgv~-~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~ 171 (419)
T KOG2120|consen 93 NPGVS-WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFM 171 (419)
T ss_pred CCCCC-cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhh
Confidence 45556 66799999999999999999999999999999987 6899999875321 0 0
Q ss_pred -hh--------------------------chHHHhhcCcccceecee----------c-----------cCCCCcccHHH
Q 038746 91 -LS--------------------------SLPSVFSRFDSVTKLALR----------C-----------DRKSISLDDDA 122 (147)
Q Consensus 91 -~~--------------------------~l~~l~~r~~~L~~L~L~----------c-----------~r~c~~ItD~~ 122 (147)
.+ .+.-+.+.|..|+.|+|. | +.+|.++|..+
T Consensus 172 ~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 172 DQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA 251 (419)
T ss_pred cCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH
Confidence 00 111122333333222222 0 11688899999
Q ss_pred HHHHHHhCCCCcEEeccCCCCCCC
Q 038746 123 LVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 123 L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
+..+...|..|.+|||++|.-.+|
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccch
Confidence 999999999999999999976665
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.49 E-value=1.7e-14 Score=120.95 Aligned_cols=101 Identities=29% Similarity=0.504 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHhCChHHHHHHhhhccccccc--CCCcceeeeccchh-hh----------------------------h
Q 038746 43 DLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRV--DGGSRYRLSLNAQS-EI----------------------------L 91 (147)
Q Consensus 43 ~LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~--~~~lw~~l~l~~~~-~~----------------------------~ 91 (147)
.||.|++++||++|+.+.++.+++||+.|... +...|+++++-... ++ .
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ 153 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD 153 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence 69999999999999999999999999999764 48999999874321 11 1
Q ss_pred hchHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 92 SSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 92 ~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
..+..+...||++++|++. +|..|||..+..+++.|++|++|+|.+|..+||
T Consensus 154 sslrt~~~~CpnIehL~l~---gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALY---GCKKITDSSLLSLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred chhhHHhhhCCchhhhhhh---cceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence 2344556666777777776 688888888888888888888888888888876
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.31 E-value=3.7e-13 Score=80.74 Aligned_cols=44 Identities=43% Similarity=0.741 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC--CCcceeeec
Q 038746 41 TGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLSL 84 (147)
Q Consensus 41 ~~~LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~--~~lw~~l~l 84 (147)
|+.||+|++.+||+||+.+|+.++++|||+|+.++ ..+|+++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 46799999999999999999999999999999976 578987764
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.77 E-value=3.3e-09 Score=60.78 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHhCChHHHHHHhhhcccccccC--CCcce
Q 038746 44 LPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRY 80 (147)
Q Consensus 44 LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~--~~lw~ 80 (147)
||+|++.+||.+|+..|+.++++|||+|+.+. ...|+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 79999999999999999999999999998875 35554
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.53 E-value=3.7e-08 Score=58.67 Aligned_cols=35 Identities=43% Similarity=0.661 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC
Q 038746 41 TGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD 75 (147)
Q Consensus 41 ~~~LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~ 75 (147)
+..||+|++.+||++|+..|+.++++|||+|+.+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~ 37 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLV 37 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHH
Confidence 34699999999999999999999999999998765
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.24 E-value=3.5e-07 Score=77.43 Aligned_cols=51 Identities=29% Similarity=0.412 Sum_probs=39.7
Q ss_pred chHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 93 SLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 93 ~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
.+..+.+.|++|++|+|. +|..|||..|+.++++||+|++||+++|.+|++
T Consensus 181 s~~sla~~C~~l~~l~L~---~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 181 SLLSLARYCRKLRHLNLH---SCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred HHHHHHHhcchhhhhhhc---ccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence 355677777888888887 677888888888888888888888888877765
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.06 E-value=5.5e-06 Score=69.20 Aligned_cols=53 Identities=36% Similarity=0.607 Sum_probs=46.3
Q ss_pred hchHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCCC
Q 038746 92 SSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDH 147 (147)
Q Consensus 92 ~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD~ 147 (147)
..+..++.+|++|+.|.+. +|..+||+++..++++|++|++|+|++|..+||+
T Consensus 259 ~~l~~l~~~c~~L~~L~l~---~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~ 311 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLS---NCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS 311 (482)
T ss_pred hhHHHHHhhCCCcceEccC---CCCccchhHHHHHHHhcCcccEEeeecCccchHH
Confidence 3477788889999999987 6777999999999999999999999999988763
No 8
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=97.82 E-value=8.4e-06 Score=66.94 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=44.7
Q ss_pred cCCCCCCCCcccc--cCCCCCCCCCHHHHHHHHHh-----CChHHHHHHhhhcccccccC--CCcceeee
Q 038746 23 VSNDGVEFSDELD--KARDFTGDLPDDCLAYIFQF-----LGSGDRKRCSLVCKRWLRVD--GGSRYRLS 83 (147)
Q Consensus 23 ~~~~~~~~~~~~~--~~~~~~~~LP~elL~~Ifs~-----L~~~dl~~~s~VCk~W~~~~--~~lw~~l~ 83 (147)
..|+..-+-|..+ +...+|..||||+|..||.+ |+.++|.+++.|||.|+..+ +.+|+.-.
T Consensus 87 ~f~~tLt~qe~v~~qp~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 87 YFQQTLTFQESVLCQPELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred ccccccccccccccchhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 3455544455433 55666789999999999986 45689999999999998865 56666443
No 9
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.73 E-value=5.5e-06 Score=68.89 Aligned_cols=47 Identities=38% Similarity=0.598 Sum_probs=41.6
Q ss_pred CCCCCCCC----HHHHHHHHHhCChHHHHHHhhhcccccccC--CCcceeeec
Q 038746 38 RDFTGDLP----DDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLSL 84 (147)
Q Consensus 38 ~~~~~~LP----~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~--~~lw~~l~l 84 (147)
+|+++.|| +++-+.||+||+..+|++|.+|||+|+++. +.+|+++-.
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie 124 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE 124 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 58888999 999999999999999999999999998865 677877643
No 10
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.57 E-value=8.6e-05 Score=62.01 Aligned_cols=50 Identities=26% Similarity=0.390 Sum_probs=45.1
Q ss_pred HHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCCC
Q 038746 95 PSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDH 147 (147)
Q Consensus 95 ~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD~ 147 (147)
..+...|.+|++|+|+ .|..++|.++..++..|++|++|++.+|..+||+
T Consensus 236 ~~~~~~~~~L~~l~l~---~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 236 LLLLSICRKLKSLDLS---GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred hhhhhhcCCcCccchh---hhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence 3477888999999999 6777999999999999999999999999989874
No 11
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.47 E-value=5.1e-05 Score=39.75 Aligned_cols=18 Identities=50% Similarity=1.018 Sum_probs=16.7
Q ss_pred CCCCcEEeccCCCCCCCC
Q 038746 130 CQKLTRLKLRGCREITDH 147 (147)
Q Consensus 130 Cp~L~~L~L~~C~~iTD~ 147 (147)
||+|++|+|++|.+|||+
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 899999999999999984
No 12
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.38 E-value=0.00017 Score=37.73 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=23.2
Q ss_pred CcccceeceeccCCCCcccHHHHHHHHH
Q 038746 101 FDSVTKLALRCDRKSISLDDDALVLISL 128 (147)
Q Consensus 101 ~~~L~~L~L~c~r~c~~ItD~~L~~ia~ 128 (147)
|++|++|+|+ +|..|||.++..|++
T Consensus 1 c~~L~~L~l~---~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLS---GCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCC---CCCCcCHHHHHHHhc
Confidence 6899999999 799999999999986
No 13
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00019 Score=55.84 Aligned_cols=46 Identities=30% Similarity=0.425 Sum_probs=41.0
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
+..++.|+.|.+. .|..+.|.+|+.|+.-.|+|+.|+|++|..|||
T Consensus 121 L~~l~~i~~l~l~---~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 121 LRDLRSIKSLSLA---NCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred Hhccchhhhheec---cccchhhHHHHHhcccccchheeeccCCCeech
Confidence 3456778888888 799999999999999999999999999999998
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0023 Score=52.96 Aligned_cols=49 Identities=24% Similarity=0.419 Sum_probs=33.7
Q ss_pred chHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCC
Q 038746 93 SLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 93 ~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iT 145 (147)
.+..+.+|||+|.+|||+ .|..++|..+.++- .++.|++|.|+.|..|-
T Consensus 304 h~~tL~~rcp~l~~LDLS---D~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~ 352 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLS---DSVMLKNDCFQEFF-KFNYLQHLSLSRCYDII 352 (419)
T ss_pred HHHHHHHhCCceeeeccc---cccccCchHHHHHH-hcchheeeehhhhcCCC
Confidence 355677778888888887 57777774444443 47778888888887653
No 15
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.30 E-value=0.0029 Score=53.37 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHhCC-hHHHHHHhhhcccccccCC
Q 038746 42 GDLPDDCLAYIFQFLG-SGDRKRCSLVCKRWLRVDG 76 (147)
Q Consensus 42 ~~LP~elL~~Ifs~L~-~~dl~~~s~VCk~W~~~~~ 76 (147)
.+||+|+|..|.++|+ ..|+.+.+.||+.|+.+.+
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 3599999999999996 6899999999999998654
No 16
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.002 Score=50.22 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=39.6
Q ss_pred hHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCC
Q 038746 94 LPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREI 144 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~i 144 (147)
+..+..-+++|+.|+|+ +|..|||.||..+.+ .++|+.|.|.+=..|
T Consensus 143 L~~l~~~~~~L~~L~ls---gC~rIT~~GL~~L~~-lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 143 LERLGGLAPSLQDLDLS---GCPRITDGGLACLLK-LKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHhcccccchheeecc---CCCeechhHHHHHHH-hhhhHHHHhcCchhh
Confidence 55566667999999999 899999999999987 999999998765433
No 17
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.66 E-value=0.0073 Score=35.44 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=27.5
Q ss_pred cccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 102 DSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 102 ~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
++|+.|+|+ ...|++ +......|++|+.|+|+++ .|+|
T Consensus 1 ~~L~~L~l~----~N~i~~--l~~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLS----NNQITD--LPPELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEET----SSS-SS--HGGHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEcc----CCCCcc--cCchHhCCCCCCEEEecCC-CCCC
Confidence 478999998 566775 4453457999999999998 6775
No 18
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.85 E-value=0.0093 Score=52.55 Aligned_cols=40 Identities=30% Similarity=0.520 Sum_probs=36.8
Q ss_pred cCCCCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC
Q 038746 36 KARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD 75 (147)
Q Consensus 36 ~~~~~~~~LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~ 75 (147)
..++.+..||.|+..+||.||+.+++..+++||+.|+.+.
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~ 142 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLL 142 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhh
Confidence 4478888999999999999999999999999999998876
No 19
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.66 E-value=0.03 Score=28.26 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=16.7
Q ss_pred CcccceeceeccCCCCcccHHHHHHHHH
Q 038746 101 FDSVTKLALRCDRKSISLDDDALVLISL 128 (147)
Q Consensus 101 ~~~L~~L~L~c~r~c~~ItD~~L~~ia~ 128 (147)
+++|++|+|+ ...|+|+++..|++
T Consensus 1 ~~~L~~L~l~----~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLS----NNQITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-T----SSBEHHHHHHHHHH
T ss_pred CCCCCEEEcc----CCcCCHHHHHHhCC
Confidence 4678899998 45599999988874
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.44 E-value=0.065 Score=42.47 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=25.8
Q ss_pred HhhcCcccceeceeccCCCCcccHHHHHHHHHhC----CCCcEEeccCCCCCC
Q 038746 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRC----QKLTRLKLRGCREIT 145 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~C----p~L~~L~L~~C~~iT 145 (147)
....+++|+.|+++ ...++|.++..++..+ +.|++|++++| .++
T Consensus 216 ~~~~~~~L~~L~ls----~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~ 263 (319)
T cd00116 216 TLASLKSLEVLNLG----DNNLTDAGAAALASALLSPNISLLTLSLSCN-DIT 263 (319)
T ss_pred HhcccCCCCEEecC----CCcCchHHHHHHHHHHhccCCCceEEEccCC-CCC
Confidence 34445566666665 3346666666666554 56677776666 444
No 21
>PF13013 F-box-like_2: F-box-like domain
Probab=93.25 E-value=0.076 Score=37.37 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHhCChHHHHHHhhhcc
Q 038746 41 TGDLPDDCLAYIFQFLGSGDRKRCSLVCK 69 (147)
Q Consensus 41 ~~~LP~elL~~Ifs~L~~~dl~~~s~VCk 69 (147)
+.+||+||+..||.+-...++......|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 66799999999999999999998888888
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=92.88 E-value=0.19 Score=39.81 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=27.1
Q ss_pred hcCcccceeceeccCCCCcccHHHHHHHHH---hCCCCcEEeccCCCCCCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKLRGCREITD 146 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~---~Cp~L~~L~L~~C~~iTD 146 (147)
..+++|++|+|+ ...+++.++..++. .+++|++|+|++| .++|
T Consensus 190 ~~~~~L~~L~L~----~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~ 235 (319)
T cd00116 190 KANCNLEVLDLN----NNGLTDEGASALAETLASLKSLEVLNLGDN-NLTD 235 (319)
T ss_pred HhCCCCCEEecc----CCccChHHHHHHHHHhcccCCCCEEecCCC-cCch
Confidence 344577777776 33566666555443 5667888888876 4554
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.81 E-value=0.2 Score=45.57 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=39.9
Q ss_pred hchHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 92 SSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 92 ~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
.....+...+|+|++|.++ ...+.++.+..+-..+|||..||++++ +|++
T Consensus 138 ~W~~kig~~LPsL~sL~i~----~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~n 187 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVIS----GRQFDNDDFSQLCASFPNLRSLDISGT-NISN 187 (699)
T ss_pred cHHHHHhhhCcccceEEec----CceecchhHHHHhhccCccceeecCCC-CccC
Confidence 4466778889999999998 555555558888889999999999997 5664
No 24
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.05 E-value=0.17 Score=23.63 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=9.3
Q ss_pred CCCcEEeccCCCCCC
Q 038746 131 QKLTRLKLRGCREIT 145 (147)
Q Consensus 131 p~L~~L~L~~C~~iT 145 (147)
++|+.|+|++|. ++
T Consensus 1 ~~L~~L~l~~n~-L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LT 14 (17)
T ss_dssp TT-SEEEETSS---S
T ss_pred CccCEEECCCCC-CC
Confidence 579999999985 65
No 25
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=88.42 E-value=0.15 Score=41.47 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=41.1
Q ss_pred CCCCcccccCCCCCCCCCHHHHHHHHHhCC-hHHHHHHhhhcccccccC--CCcceeee
Q 038746 28 VEFSDELDKARDFTGDLPDDCLAYIFQFLG-SGDRKRCSLVCKRWLRVD--GGSRYRLS 83 (147)
Q Consensus 28 ~~~~~~~~~~~~~~~~LP~elL~~Ifs~L~-~~dl~~~s~VCk~W~~~~--~~lw~~l~ 83 (147)
+++++..+.+....+ ||.|++..|+..|+ ..|+.+.++|=...+.+. ..+|+++.
T Consensus 190 iqi~~~~~~~ltl~d-LP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLc 247 (332)
T KOG3926|consen 190 IQITEPDPAGLTLHD-LPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLC 247 (332)
T ss_pred hcccCCCcCCCCccc-chHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445555555556565 99999999999998 799999999976666554 46777763
No 26
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.30 E-value=0.65 Score=24.35 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.1
Q ss_pred cccceeceeccCCCCcccHHHHHHHHHhC
Q 038746 102 DSVTKLALRCDRKSISLDDDALVLISLRC 130 (147)
Q Consensus 102 ~~L~~L~L~c~r~c~~ItD~~L~~ia~~C 130 (147)
++|+.|+|+ ...|+|+|...+++..
T Consensus 2 ~~L~~LdL~----~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLS----NNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECC----CCCCCHHHHHHHHHHh
Confidence 578999998 7789999999998754
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=85.89 E-value=0.055 Score=33.14 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCC
Q 038746 96 SVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 96 ~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~ 142 (147)
..+..+++|+.|+|+ ...|+.-.- ..-..+++|++|+|++|.
T Consensus 19 ~~f~~l~~L~~L~l~----~N~l~~i~~-~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 19 DSFSNLPNLETLDLS----NNNLTSIPP-DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTTTGTTESEEEET----SSSESEEET-TTTTTSTTESEEEETSSS
T ss_pred HHHcCCCCCCEeEcc----CCccCccCH-HHHcCCCCCCEEeCcCCc
Confidence 345678999999998 333331111 123579999999999873
No 28
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.34 E-value=0.42 Score=38.52 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=20.0
Q ss_pred cccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccC
Q 038746 102 DSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRG 140 (147)
Q Consensus 102 ~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~ 140 (147)
++|+.|.+++ ...--..+|..++..||+|++|+|++
T Consensus 65 p~LkkL~lsd---n~~~~~~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 65 PKLKKLELSD---NYRRVSGGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred chhhhhcccC---CcccccccceehhhhCCceeEEeecC
Confidence 5666666663 11112345566666666666666665
No 29
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.20 E-value=0.38 Score=23.75 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=10.4
Q ss_pred CCcEEeccCCCCCC
Q 038746 132 KLTRLKLRGCREIT 145 (147)
Q Consensus 132 ~L~~L~L~~C~~iT 145 (147)
+|++|+|++| ++|
T Consensus 1 ~L~~Ldls~n-~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGN-NLT 13 (22)
T ss_dssp TESEEEETSS-EES
T ss_pred CccEEECCCC-cCE
Confidence 5889999998 665
No 30
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=83.92 E-value=1.2 Score=30.09 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCCCCCCHHHHHHHHHhCChHHHHHH
Q 038746 39 DFTGDLPDDCLAYIFQFLGSGDRKRC 64 (147)
Q Consensus 39 ~~~~~LP~elL~~Ifs~L~~~dl~~~ 64 (147)
..+..||.|+...|+++|+..||...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 56778999999999999999998753
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=79.33 E-value=1.4 Score=38.40 Aligned_cols=47 Identities=19% Similarity=0.327 Sum_probs=23.3
Q ss_pred hHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCC
Q 038746 94 LPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iT 145 (147)
+..++..+|+|+.|+|+--+ -...+++.... ..++|+.|.|++| ++|
T Consensus 164 v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~---~l~~lK~L~l~~C-Gls 210 (505)
T KOG3207|consen 164 VLKIAEQLPSLENLNLSSNR-LSNFISSNTTL---LLSHLKQLVLNSC-GLS 210 (505)
T ss_pred HHHHHHhcccchhccccccc-ccCCccccchh---hhhhhheEEeccC-CCC
Confidence 45566666777777766111 00011111111 4566777777777 443
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.81 E-value=1.9 Score=36.08 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=34.3
Q ss_pred hHHHhhcCcccceeceeccCCCCcccH-HHHHHHHHhCCCCcEEeccCCCCC
Q 038746 94 LPSVFSRFDSVTKLALRCDRKSISLDD-DALVLISLRCQKLTRLKLRGCREI 144 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~r~c~~ItD-~~L~~ia~~Cp~L~~L~L~~C~~i 144 (147)
+..+...+..+++|||. ...|+| +.+.+|.++.|.|+.|||+ |..+
T Consensus 63 ~~~~~~~~~~v~elDL~----~N~iSdWseI~~ile~lP~l~~LNls-~N~L 109 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLT----GNLISDWSEIGAILEQLPALTTLNLS-CNSL 109 (418)
T ss_pred HHHHHHHhhhhhhhhcc----cchhccHHHHHHHHhcCccceEeecc-CCcC
Confidence 44566677888888886 666777 6778888888888888885 5544
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=77.59 E-value=1.8 Score=37.73 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=32.1
Q ss_pred cCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 100 RFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 100 r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
.+++|+.|.|+ .++++-..+..++..||+|+.|.|.+=
T Consensus 195 ~l~~lK~L~l~----~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 195 LLSHLKQLVLN----SCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhhhheEEec----cCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 45678899998 566889999999999999999999864
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=73.83 E-value=3.8 Score=34.68 Aligned_cols=16 Identities=25% Similarity=0.327 Sum_probs=9.1
Q ss_pred HHHhCCCCcEEeccCC
Q 038746 126 ISLRCQKLTRLKLRGC 141 (147)
Q Consensus 126 ia~~Cp~L~~L~L~~C 141 (147)
+.+..|+|+.|.|.+|
T Consensus 265 l~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGN 280 (382)
T ss_pred HhccCCCCceeccCcc
Confidence 3344566666666665
No 35
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=69.84 E-value=3.4 Score=28.60 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccCCCcceeee
Q 038746 40 FTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLS 83 (147)
Q Consensus 40 ~~~~LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~~~lw~~l~ 83 (147)
.+..+|.+++.-|+..+++.+|..+..-|.........+|+++-
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~tdeLW~~~i 46 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIEDTDELWKKLI 46 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchhhHHHHHHHH
Confidence 45679999999999999999999999998877666667777653
No 36
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=67.69 E-value=5.5 Score=36.93 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=25.9
Q ss_pred hHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 94 LPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+...+..+++|+.|+|+ ...++...-..+...+.+|++|+|+++
T Consensus 85 ~~~~~~~l~~L~~L~Ls----~n~~~~~ip~~~~~~l~~L~~L~Ls~n 128 (968)
T PLN00113 85 ISSAIFRLPYIQTINLS----NNQLSGPIPDDIFTTSSSLRYLNLSNN 128 (968)
T ss_pred CChHHhCCCCCCEEECC----CCccCCcCChHHhccCCCCCEEECcCC
Confidence 34455677888888887 333333222233445667777777665
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=67.11 E-value=6.3 Score=33.36 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=25.8
Q ss_pred hHHHhhcCcccceeceeccCCCCcccHHHHHHHHH---hCCCCcEEeccCC
Q 038746 94 LPSVFSRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKLRGC 141 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~---~Cp~L~~L~L~~C 141 (147)
+..-+.+|++|+.|||+ -..+|-++-..+|+ ..|+|++|++..|
T Consensus 205 l~eal~~~~~LevLdl~----DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 205 LAEALEHCPHLEVLDLR----DNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHHhCCcceeeecc----cchhhhHHHHHHHHHhcccchheeeccccc
Confidence 33445666777777776 33445555555554 3456777777777
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=63.75 E-value=4.8 Score=30.38 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhCC
Q 038746 44 LPDDCLAYIFQFLG 57 (147)
Q Consensus 44 LP~elL~~Ifs~L~ 57 (147)
|..+++.+|.++..
T Consensus 4 lt~~~i~~~~~~~n 17 (175)
T PF14580_consen 4 LTANMIEQIAQYNN 17 (175)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 45566666666665
No 39
>PHA03100 ankyrin repeat protein; Provisional
Probab=63.25 E-value=7.2 Score=32.91 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=24.6
Q ss_pred CCCCCCCHHHHHHHHHhCChHHHHHHhhhc
Q 038746 39 DFTGDLPDDCLAYIFQFLGSGDRKRCSLVC 68 (147)
Q Consensus 39 ~~~~~LP~elL~~Ifs~L~~~dl~~~s~VC 68 (147)
..+..||.|+...|+++|+..||......+
T Consensus 446 ~~w~~lP~Eik~~Il~~l~~~dl~~~~~~~ 475 (480)
T PHA03100 446 TYWNILPIEIKYKILEYLSNRDLKSLIENF 475 (480)
T ss_pred CchhhCcHHHHHHHHHhCCHHHHHHHHhhh
Confidence 356679999999999999999997665443
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=62.68 E-value=3.9 Score=37.44 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=21.6
Q ss_pred eeeeccchhhhhhchHHHhhcCcccceecee
Q 038746 80 YRLSLNAQSEILSSLPSVFSRFDSVTKLALR 110 (147)
Q Consensus 80 ~~l~l~~~~~~~~~l~~l~~r~~~L~~L~L~ 110 (147)
+++.+.......+.+..++..||||.+||++
T Consensus 151 ~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS 181 (699)
T KOG3665|consen 151 RSLVISGRQFDNDDFSQLCASFPNLRSLDIS 181 (699)
T ss_pred ceEEecCceecchhHHHHhhccCccceeecC
Confidence 4555554332334467788999999999998
No 41
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.86 E-value=9 Score=31.81 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHHHHHhCChHHHHHH
Q 038746 39 DFTGDLPDDCLAYIFQFLGSGDRKRC 64 (147)
Q Consensus 39 ~~~~~LP~elL~~Ifs~L~~~dl~~~ 64 (147)
..+..||.|+...|+++|+..||..+
T Consensus 385 ~~w~~LP~Eik~~Il~~l~~~dL~~~ 410 (413)
T PHA02875 385 SKWNILPHEIKYLILEKIGNKDIDIA 410 (413)
T ss_pred cchhcCcHHHHHHHHHHhccchhhhh
Confidence 44566999999999999999998653
No 42
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=50.90 E-value=11 Score=19.32 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=16.0
Q ss_pred ccceeceeccCCCCcccHHHHHHHHHhCC
Q 038746 103 SVTKLALRCDRKSISLDDDALVLISLRCQ 131 (147)
Q Consensus 103 ~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp 131 (147)
+|+.|.|. ....-+++.++.+..+||
T Consensus 1 sLKtL~L~---~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLD---SVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEee---EEEECChhHHHHhhccCc
Confidence 36677776 222234557888888886
No 43
>PHA02989 ankyrin repeat protein; Provisional
Probab=48.14 E-value=16 Score=31.47 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=23.4
Q ss_pred CCCCCCCHHHHHHHHHhCChHHHHHHhh
Q 038746 39 DFTGDLPDDCLAYIFQFLGSGDRKRCSL 66 (147)
Q Consensus 39 ~~~~~LP~elL~~Ifs~L~~~dl~~~s~ 66 (147)
..+..||.|+...|+.+|+..||.....
T Consensus 457 ~~w~~LP~Eik~~Il~~L~~~dl~~i~~ 484 (494)
T PHA02989 457 NYWMYLPIEIQINILEYLTFSDFKTILK 484 (494)
T ss_pred cHHHhCCHHHHHHHHHcCCHHHHHHHHh
Confidence 4566799999999999999999876543
No 44
>PHA03095 ankyrin-like protein; Provisional
Probab=45.24 E-value=21 Score=29.92 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHhCChHHHHHH
Q 038746 42 GDLPDDCLAYIFQFLGSGDRKRC 64 (147)
Q Consensus 42 ~~LP~elL~~Ifs~L~~~dl~~~ 64 (147)
..||.|+...|++||+..||...
T Consensus 443 ~~lP~Ei~~~Il~~l~~~dl~~~ 465 (471)
T PHA03095 443 CALPPEIVMRILDFLPDDDLRNL 465 (471)
T ss_pred CCCCHHHHHHHHHhCCHHHHHHH
Confidence 57999999999999999998653
No 45
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=44.89 E-value=13 Score=35.77 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=23.0
Q ss_pred hcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iT 145 (147)
..+++|+.|+|+ +|..++. +..-...+++|+.|++++|..++
T Consensus 866 ~~l~~L~~L~L~---~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 866 EKFSNLSFLDMN---GCNNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred hcCCCCCEEECC---CCCCcCc--cCcccccccCCCeeecCCCcccc
Confidence 445566666665 4555442 22222346667777777776554
No 46
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=44.89 E-value=11 Score=30.43 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=31.0
Q ss_pred hHHHhhcCcccceeceeccCCCCcccH-HHHHHHHHhCCCCcEEeccCCC
Q 038746 94 LPSVFSRFDSVTKLALRCDRKSISLDD-DALVLISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~r~c~~ItD-~~L~~ia~~Cp~L~~L~L~~C~ 142 (147)
+.-++..+|+|+.|+|+ ...|.+ +.+.-+++ .+||..|+|.+|.
T Consensus 83 l~vl~e~~P~l~~l~ls----~Nki~~lstl~pl~~-l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 83 LEVLAEKAPNLKVLNLS----GNKIKDLSTLRPLKE-LENLKSLDLFNCS 127 (260)
T ss_pred ceehhhhCCceeEEeec----CCccccccccchhhh-hcchhhhhcccCC
Confidence 44456667999999998 444553 45555554 7889999998884
No 47
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=43.68 E-value=21 Score=34.36 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=7.2
Q ss_pred hCCCCcEEeccCCCC
Q 038746 129 RCQKLTRLKLRGCRE 143 (147)
Q Consensus 129 ~Cp~L~~L~L~~C~~ 143 (147)
.+++|+.|+|++|..
T Consensus 679 ~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 679 YLNKLEDLDMSRCEN 693 (1153)
T ss_pred ccCCCCEEeCCCCCC
Confidence 344455555555543
No 48
>PLN03150 hypothetical protein; Provisional
Probab=42.43 E-value=20 Score=32.19 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=9.0
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|+.|+|+++
T Consensus 488 ~L~~L~~L~Ls~N 500 (623)
T PLN03150 488 QLTSLRILNLNGN 500 (623)
T ss_pred cCCCCCEEECcCC
Confidence 4677777777765
No 49
>PHA02878 ankyrin repeat protein; Provisional
Probab=40.17 E-value=27 Score=29.81 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHHhCChHHHHH
Q 038746 39 DFTGDLPDDCLAYIFQFLGSGDRKR 63 (147)
Q Consensus 39 ~~~~~LP~elL~~Ifs~L~~~dl~~ 63 (147)
..+..||.|+-..|+.+|+..||..
T Consensus 445 ~~w~~lP~Eik~~Il~~l~~~dl~~ 469 (477)
T PHA02878 445 YMWNRLPLEIKHYIMELLDDASLCN 469 (477)
T ss_pred CcHhhCCHHHHHHHHHHcCcHHHHH
Confidence 4466799999999999999999864
No 50
>PHA02798 ankyrin-like protein; Provisional
Probab=36.68 E-value=30 Score=29.68 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.6
Q ss_pred CCCCCCCHHHHHHHHHhCChHHHHH
Q 038746 39 DFTGDLPDDCLAYIFQFLGSGDRKR 63 (147)
Q Consensus 39 ~~~~~LP~elL~~Ifs~L~~~dl~~ 63 (147)
..+..||.|+-..|+.+|+..|+.-
T Consensus 462 ~~w~~lP~Eik~~Il~~L~~~dl~~ 486 (489)
T PHA02798 462 SYWNYIPNEIKFKIINNLSNNDILE 486 (489)
T ss_pred chhhhCCHHHHHHHHHcCChHHHHH
Confidence 5567899999999999999988753
No 51
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=36.36 E-value=28 Score=32.27 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=7.1
Q ss_pred hhcCcccceecee
Q 038746 98 FSRFDSVTKLALR 110 (147)
Q Consensus 98 ~~r~~~L~~L~L~ 110 (147)
...+++|+.|+|+
T Consensus 160 ~~~l~~L~~L~L~ 172 (968)
T PLN00113 160 IGSFSSLKVLDLG 172 (968)
T ss_pred HhcCCCCCEEECc
Confidence 3445556666665
No 52
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=34.22 E-value=39 Score=16.58 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=8.4
Q ss_pred CCCcEEeccCC
Q 038746 131 QKLTRLKLRGC 141 (147)
Q Consensus 131 p~L~~L~L~~C 141 (147)
++|+.|+|.++
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00370 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 57888888776
No 53
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=34.22 E-value=39 Score=16.58 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=8.4
Q ss_pred CCCcEEeccCC
Q 038746 131 QKLTRLKLRGC 141 (147)
Q Consensus 131 p~L~~L~L~~C 141 (147)
++|+.|+|.++
T Consensus 2 ~~L~~L~L~~N 12 (26)
T smart00369 2 PNLRELDLSNN 12 (26)
T ss_pred CCCCEEECCCC
Confidence 57888888776
No 54
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=31.65 E-value=72 Score=26.99 Aligned_cols=46 Identities=17% Similarity=0.422 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHhCChH--------HHHHHhhhcccccccC------CCcceeeecc
Q 038746 40 FTGDLPDDCLAYIFQFLGSG--------DRKRCSLVCKRWLRVD------GGSRYRLSLN 85 (147)
Q Consensus 40 ~~~~LP~elL~~Ifs~L~~~--------dl~~~s~VCk~W~~~~------~~lw~~l~l~ 85 (147)
....||.|+|..|..+.+.. ...+++-||+.|+... +..|-++++.
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~ 103 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFP 103 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchh
Confidence 44569999999999999742 3467899999998754 3456665553
No 55
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=31.24 E-value=25 Score=33.58 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=27.0
Q ss_pred cccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCC
Q 038746 102 DSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 102 ~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~ 142 (147)
+.|+.+||+ |.+++.-.+...... |+|++|||+|=.
T Consensus 452 ~qL~~lDlS----~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 452 PQLKVLDLS----CNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred CcceEEecc----cchhhhhhhhhhCCC-cccceeeccCCc
Confidence 457888887 777777666665543 899999999854
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=28.32 E-value=99 Score=25.91 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=31.9
Q ss_pred chHHHhhcCcccceeceeccCCCCc-ccHHHHHHHHHhCCCCcEEeccCC
Q 038746 93 SLPSVFSRFDSVTKLALRCDRKSIS-LDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 93 ~l~~l~~r~~~L~~L~L~c~r~c~~-ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
.+..+..+||+|+.++|+- +-.+ -+.+-|.-+..+-.+|++|.|++|
T Consensus 83 ~Ll~aLlkcp~l~~v~LSD--NAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 83 MLLKALLKCPRLQKVDLSD--NAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHHHHhcCCcceeeeccc--cccCcccchHHHHHHhcCCCceeEEeecC
Confidence 3555677899999999982 1111 133444455556778999999998
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=27.69 E-value=22 Score=33.44 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=5.7
Q ss_pred hcCcccceecee
Q 038746 99 SRFDSVTKLALR 110 (147)
Q Consensus 99 ~r~~~L~~L~L~ 110 (147)
.+|++|++|||+
T Consensus 206 r~l~~LkhLDls 217 (1096)
T KOG1859|consen 206 RRLPKLKHLDLS 217 (1096)
T ss_pred Hhcccccccccc
Confidence 444445555444
No 58
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.16 E-value=59 Score=29.26 Aligned_cols=45 Identities=27% Similarity=0.263 Sum_probs=32.8
Q ss_pred hHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 94 LPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+...++.+.+++|+ +..-..=+++..|++..|+|+.|+|++=
T Consensus 210 L~~~~~n~p~i~sl~ls---nNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLS---NNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred HHHhhcCCcceeeeecc---cchhhchhhhhHHHHhcchhheeecccc
Confidence 33445567889999987 2222234577789999999999999873
No 59
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=24.24 E-value=66 Score=16.70 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=11.8
Q ss_pred HHHHhCCCCcEEeccC
Q 038746 125 LISLRCQKLTRLKLRG 140 (147)
Q Consensus 125 ~ia~~Cp~L~~L~L~~ 140 (147)
.+...+|+|+.|+...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 3556789999988754
No 60
>PLN03150 hypothetical protein; Provisional
Probab=24.14 E-value=49 Score=29.70 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=28.8
Q ss_pred hHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 94 LPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..-...+++|+.|+|+ ...++...=.. ...+++|+.|+|+++
T Consensus 434 ip~~i~~L~~L~~L~Ls----~N~l~g~iP~~-~~~l~~L~~LdLs~N 476 (623)
T PLN03150 434 IPNDISKLRHLQSINLS----GNSIRGNIPPS-LGSITSLEVLDLSYN 476 (623)
T ss_pred CCHHHhCCCCCCEEECC----CCcccCcCChH-HhCCCCCCEEECCCC
Confidence 44445677899999998 33343221112 346899999999987
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=23.22 E-value=53 Score=27.46 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=23.0
Q ss_pred hcCcccceeceeccCCCCcccHHHHHHHHH---hCCCCcEEeccCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~---~Cp~L~~L~L~~C 141 (147)
.++.+|+.|+|. -..+|-.+-.++|. ..++|++|++..|
T Consensus 211 ~y~~~LevLDlq----DNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 211 FYSHSLEVLDLQ----DNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHhCcceeeecc----ccchhhhhHHHHHHHhcccchhhhccccch
Confidence 455667777775 34455555555553 3445677777777
No 62
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.64 E-value=42 Score=24.53 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=31.7
Q ss_pred CcCCCCCccCCCCCCCCc-ccccCCCCCCCCCH----------HHHHHHHHhCChHHHHHHh--hhcccccc
Q 038746 15 FNILSPAIVSNDGVEFSD-ELDKARDFTGDLPD----------DCLAYIFQFLGSGDRKRCS--LVCKRWLR 73 (147)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~LP~----------elL~~Ifs~L~~~dl~~~s--~VCk~W~~ 73 (147)
..++||-+.++--+-|+- +.+++-...-.|.. .+|+.+.+.|....-.+-+ -.|+-|++
T Consensus 75 c~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe 146 (165)
T KOG0426|consen 75 CEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWRE 146 (165)
T ss_pred cccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHH
Confidence 456999888865554444 22222222222332 3677788888643333322 35788853
No 63
>PHA02876 ankyrin repeat protein; Provisional
Probab=21.39 E-value=84 Score=28.15 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCCCCCCHHHHHHHHHhCChHHHHH
Q 038746 39 DFTGDLPDDCLAYIFQFLGSGDRKR 63 (147)
Q Consensus 39 ~~~~~LP~elL~~Ifs~L~~~dl~~ 63 (147)
..|..||.|+-..|+.+|+..||..
T Consensus 654 ~~w~~lP~eik~~Il~~l~~~dl~~ 678 (682)
T PHA02876 654 SDWSKLPPDIKLSILEFIDNNELRK 678 (682)
T ss_pred cchhhCCHHHHHHHHHHhhhhHHHH
Confidence 3556799999999999999999864
Done!