Query 038746
Match_columns 147
No_of_seqs 173 out of 1434
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.6 1.5E-15 5.2E-20 120.3 5.6 104 38-146 6-157 (336)
2 2p1m_B Transport inhibitor res 99.6 8.5E-16 2.9E-20 129.9 4.1 104 38-145 3-144 (594)
3 3ogk_B Coronatine-insensitive 99.4 2.5E-14 8.5E-19 121.0 3.5 66 43-110 15-81 (592)
4 1fs1_A SKP2 F-BOX, cyclin A/CD 99.3 1.7E-13 5.9E-18 83.1 1.6 46 38-83 6-53 (53)
5 3e4g_A ATP synthase subunit S, 98.7 1.1E-08 3.6E-13 76.6 4.9 63 80-146 88-154 (176)
6 2e31_A FBS1, F-box only protei 98.7 2.4E-09 8.2E-14 86.2 0.6 45 38-82 48-95 (297)
7 3e4g_A ATP synthase subunit S, 98.7 6.4E-09 2.2E-13 77.9 1.9 63 80-147 64-130 (176)
8 3l2o_B F-box only protein 4; s 98.6 1.8E-09 6.3E-14 87.0 -1.9 46 39-84 3-50 (312)
9 3v7d_B Cell division control p 98.5 4.6E-09 1.6E-13 85.2 -2.3 49 37-85 11-62 (464)
10 1p22_A F-BOX/WD-repeat protein 98.5 7.4E-09 2.5E-13 84.1 -2.1 48 37-84 7-60 (435)
11 2ovr_B FBW7, F-BOX/WD repeat p 98.5 2.3E-08 7.9E-13 81.1 0.5 47 37-83 15-63 (445)
12 3ogk_B Coronatine-insensitive 97.5 0.00034 1.2E-08 58.7 8.0 63 80-147 466-528 (592)
13 2ast_B S-phase kinase-associat 97.3 0.00066 2.2E-08 53.0 7.5 50 94-146 186-237 (336)
14 2p1m_B Transport inhibitor res 97.2 0.0004 1.4E-08 58.2 5.4 63 80-146 108-170 (594)
15 1io0_A Tropomodulin; LRR prote 96.3 0.0045 1.5E-07 45.2 4.4 62 80-146 39-107 (185)
16 3un9_A NLR family member X1; l 95.7 0.01 3.4E-07 48.2 4.5 46 96-146 120-169 (372)
17 1io0_A Tropomodulin; LRR prote 95.5 0.015 5.1E-07 42.3 4.4 62 80-146 68-137 (185)
18 2ra8_A Uncharacterized protein 95.1 0.016 5.4E-07 47.1 3.7 42 100-146 277-321 (362)
19 1z7x_W Ribonuclease inhibitor; 95.1 0.051 1.7E-06 43.9 6.7 35 103-141 86-123 (461)
20 3un9_A NLR family member X1; l 94.0 0.068 2.3E-06 43.2 5.1 40 98-141 179-221 (372)
21 2ca6_A RAN GTPase-activating p 94.0 0.069 2.4E-06 42.5 5.0 12 130-141 273-284 (386)
22 1z7x_W Ribonuclease inhibitor; 93.7 0.068 2.3E-06 43.1 4.6 42 96-141 221-266 (461)
23 4ezg_A Putative uncharacterize 93.2 0.043 1.5E-06 39.7 2.4 42 100-146 110-151 (197)
24 1pgv_A TMD-1, tropomodulin TMD 93.2 0.071 2.4E-06 40.0 3.6 48 94-146 62-112 (197)
25 2ca6_A RAN GTPase-activating p 92.8 0.16 5.4E-06 40.4 5.4 37 101-141 215-254 (386)
26 3goz_A Leucine-rich repeat-con 91.5 0.12 4.1E-06 40.9 3.1 62 80-146 54-123 (362)
27 2ell_A Acidic leucine-rich nuc 90.9 0.095 3.2E-06 36.6 1.8 43 94-141 87-130 (168)
28 2je0_A Acidic leucine-rich nuc 90.6 0.15 5.1E-06 34.9 2.6 60 80-145 67-126 (149)
29 2je0_A Acidic leucine-rich nuc 90.6 0.15 5.2E-06 34.8 2.6 38 98-139 109-148 (149)
30 2ra8_A Uncharacterized protein 90.1 0.18 6.2E-06 40.7 3.1 42 100-146 250-293 (362)
31 3goz_A Leucine-rich repeat-con 89.7 0.21 7.2E-06 39.4 3.1 19 39-57 32-50 (362)
32 1pgv_A TMD-1, tropomodulin TMD 89.6 0.44 1.5E-05 35.6 4.6 60 79-142 72-137 (197)
33 4ezg_A Putative uncharacterize 88.0 0.31 1.1E-05 35.0 2.8 45 95-146 129-173 (197)
34 4fmz_A Internalin; leucine ric 86.3 0.56 1.9E-05 36.3 3.5 42 99-146 284-325 (347)
35 4glp_A Monocyte differentiatio 83.2 1.3 4.3E-05 34.0 4.2 38 100-141 195-234 (310)
36 3rw6_A Nuclear RNA export fact 82.0 0.7 2.4E-05 36.0 2.3 44 97-145 165-209 (267)
37 2ell_A Acidic leucine-rich nuc 81.2 0.28 9.6E-06 34.1 -0.2 42 97-142 115-158 (168)
38 1wwl_A Monocyte differentiatio 79.9 2.5 8.6E-05 32.4 4.9 39 99-141 198-238 (312)
39 4glp_A Monocyte differentiatio 73.6 1.1 3.6E-05 34.4 1.1 42 100-145 167-210 (310)
40 3o53_A Protein LRIM1, AGAP0063 71.6 1.5 5.2E-05 33.7 1.6 15 96-110 28-42 (317)
41 3v47_A TOLL-like receptor 5B a 70.0 1.6 5.4E-05 34.9 1.4 13 129-141 152-164 (455)
42 3o53_A Protein LRIM1, AGAP0063 69.8 0.62 2.1E-05 35.9 -1.0 37 101-141 143-179 (317)
43 1a9n_A U2A', U2A'; complex (nu 69.7 1.3 4.5E-05 31.0 0.8 40 97-141 83-123 (176)
44 1xeu_A Internalin C; cellular 69.3 1.8 6.2E-05 32.6 1.5 13 129-141 83-95 (263)
45 1h6u_A Internalin H; cell adhe 69.2 1.9 6.4E-05 33.2 1.6 40 98-145 81-120 (308)
46 3v47_A TOLL-like receptor 5B a 69.2 0.57 1.9E-05 37.6 -1.4 42 96-141 97-139 (455)
47 4fcg_A Uncharacterized protein 69.2 1.1 3.9E-05 34.8 0.4 16 128-143 147-162 (328)
48 4fmz_A Internalin; leucine ric 68.7 1.7 6E-05 33.4 1.4 12 130-141 131-142 (347)
49 1h6t_A Internalin B; cell adhe 67.6 1.9 6.4E-05 33.0 1.3 13 129-141 176-188 (291)
50 1ozn_A Reticulon 4 receptor; N 67.3 0.8 2.7E-05 34.5 -0.9 39 98-141 125-163 (285)
51 2z80_A TOLL-like receptor 2, v 67.1 1.9 6.4E-05 33.6 1.2 13 129-141 147-159 (353)
52 2z81_A CD282 antigen, TOLL-lik 66.7 6.1 0.00021 32.3 4.4 14 128-141 384-397 (549)
53 1ozn_A Reticulon 4 receptor; N 66.4 0.98 3.4E-05 34.0 -0.5 41 97-141 75-115 (285)
54 2z66_A Variable lymphocyte rec 65.8 0.54 1.9E-05 35.8 -2.1 13 129-141 221-233 (306)
55 2z63_A TOLL-like receptor 4, v 65.6 0.65 2.2E-05 38.3 -1.8 13 129-141 492-504 (570)
56 2z62_A TOLL-like receptor 4, v 65.4 0.86 2.9E-05 34.1 -1.0 39 99-141 121-159 (276)
57 1ds9_A Outer arm dynein; leuci 65.1 2.3 7.8E-05 30.3 1.3 12 126-137 169-180 (198)
58 1a9n_A U2A', U2A'; complex (nu 65.0 1.8 6.1E-05 30.3 0.7 41 98-142 109-151 (176)
59 1h6t_A Internalin B; cell adhe 64.9 2.7 9.3E-05 32.0 1.8 13 129-141 154-166 (291)
60 1xeu_A Internalin C; cellular 62.8 2.4 8.3E-05 31.9 1.1 36 99-141 125-160 (263)
61 4fcg_A Uncharacterized protein 62.2 2.6 9E-05 32.7 1.2 14 129-142 227-240 (328)
62 3rfs_A Internalin B, repeat mo 62.1 2.8 9.7E-05 31.4 1.4 38 99-141 82-119 (272)
63 1h6u_A Internalin H; cell adhe 61.8 3.1 0.00011 31.9 1.6 13 129-141 171-183 (308)
64 2z66_A Variable lymphocyte rec 61.4 0.7 2.4E-05 35.1 -2.2 12 130-141 198-209 (306)
65 1m9s_A Internalin B; cell inva 61.3 2.7 9.2E-05 36.1 1.2 12 130-141 174-185 (605)
66 1wwl_A Monocyte differentiatio 60.8 5.4 0.00018 30.4 2.8 17 128-145 198-214 (312)
67 2z80_A TOLL-like receptor 2, v 60.5 14 0.00049 28.3 5.3 28 117-145 260-290 (353)
68 2o6s_A Variable lymphocyte rec 60.5 1.8 6.2E-05 30.9 0.0 40 97-141 71-110 (208)
69 1ogq_A PGIP-2, polygalacturona 60.4 0.8 2.7E-05 35.4 -2.1 12 130-141 148-159 (313)
70 1m9s_A Internalin B; cell inva 59.4 3.4 0.00012 35.4 1.6 39 99-145 128-166 (605)
71 1ds9_A Outer arm dynein; leuci 59.2 1.1 3.6E-05 32.1 -1.5 14 128-141 90-103 (198)
72 3oja_A Leucine-rich immune mol 58.9 1.4 4.9E-05 36.4 -0.9 38 100-141 142-179 (487)
73 2z63_A TOLL-like receptor 4, v 58.8 0.87 3E-05 37.5 -2.2 14 128-141 467-480 (570)
74 2xwt_C Thyrotropin receptor; s 58.2 0.81 2.8E-05 33.6 -2.3 13 129-141 103-115 (239)
75 3o6n_A APL1; leucine-rich repe 58.0 1.8 6E-05 34.1 -0.5 13 129-141 115-127 (390)
76 3vq2_A TLR4, TOLL-like recepto 57.5 1.1 3.8E-05 37.3 -1.8 10 101-110 472-481 (606)
77 1ziw_A TOLL-like receptor 3; i 57.4 4.3 0.00015 34.3 1.8 42 95-141 66-107 (680)
78 1o6v_A Internalin A; bacterial 56.8 4.4 0.00015 32.8 1.8 12 130-141 330-341 (466)
79 2z7x_B TOLL-like receptor 1, v 55.7 13 0.00043 30.2 4.4 39 99-141 345-384 (520)
80 3rfs_A Internalin B, repeat mo 54.5 2.6 9E-05 31.6 0.0 13 129-141 179-191 (272)
81 2z7x_B TOLL-like receptor 1, v 54.5 2.7 9.2E-05 34.3 0.1 38 96-141 63-100 (520)
82 1xku_A Decorin; proteoglycan, 54.4 3.5 0.00012 31.6 0.7 12 99-110 213-224 (330)
83 1o6v_A Internalin A; bacterial 54.3 4.8 0.00016 32.6 1.6 41 98-146 86-126 (466)
84 3zyj_A Leucine-rich repeat-con 54.0 2.3 7.9E-05 34.2 -0.4 12 130-141 135-146 (440)
85 2ft3_A Biglycan; proteoglycan, 52.6 2.3 7.9E-05 32.7 -0.6 13 129-141 100-112 (332)
86 2id5_A Lingo-1, leucine rich r 52.3 2.1 7.3E-05 34.6 -0.9 40 97-141 75-114 (477)
87 3vq2_A TLR4, TOLL-like recepto 51.8 1.3 4.6E-05 36.8 -2.2 13 129-141 471-483 (606)
88 3e6j_A Variable lymphocyte rec 51.6 4.2 0.00014 29.7 0.7 13 129-141 133-145 (229)
89 3j0a_A TOLL-like receptor 5; m 51.5 1.2 4.1E-05 39.3 -2.7 42 97-142 92-134 (844)
90 3m19_A Variable lymphocyte rec 51.2 2.5 8.6E-05 31.2 -0.6 42 98-145 79-120 (251)
91 2o6r_A Variable lymphocyte rec 50.5 2.8 9.6E-05 29.1 -0.4 42 98-145 72-113 (177)
92 2v70_A SLIT-2, SLIT homolog 2 50.0 3.3 0.00011 30.2 -0.1 40 97-141 100-139 (220)
93 2o6q_A Variable lymphocyte rec 49.9 3 0.0001 31.2 -0.3 13 129-141 179-191 (270)
94 2v9t_B SLIT homolog 2 protein 49.6 3.5 0.00012 30.0 0.0 39 98-141 100-138 (220)
95 3g39_A Variable lymphocyte rec 49.5 3.5 0.00012 28.8 0.0 39 98-141 74-112 (170)
96 2ft3_A Biglycan; proteoglycan, 49.4 4.6 0.00016 31.0 0.6 13 129-141 262-274 (332)
97 2ifg_A High affinity nerve gro 48.9 2.4 8.3E-05 32.7 -1.0 12 129-140 78-89 (347)
98 2z81_A CD282 antigen, TOLL-lik 48.1 17 0.00058 29.6 4.0 40 98-141 330-371 (549)
99 3o6n_A APL1; leucine-rich repe 47.6 6.4 0.00022 30.8 1.2 13 129-141 316-328 (390)
100 3oja_B Anopheles plasmodium-re 46.6 3.4 0.00012 34.8 -0.5 38 99-141 96-133 (597)
101 1xku_A Decorin; proteoglycan, 45.5 3.3 0.00011 31.7 -0.7 38 98-141 236-273 (330)
102 4eco_A Uncharacterized protein 45.0 16 0.00054 31.0 3.4 44 95-141 266-315 (636)
103 3rgz_A Protein brassinosteroid 44.9 7.5 0.00026 33.8 1.4 38 99-141 220-257 (768)
104 3rgz_A Protein brassinosteroid 43.9 3.7 0.00012 35.8 -0.8 13 129-141 176-188 (768)
105 2r9u_A Variable lymphocyte rec 43.6 4.2 0.00014 28.6 -0.4 39 98-141 77-115 (174)
106 2wfh_A SLIT homolog 2 protein 43.6 4 0.00014 29.2 -0.5 39 98-141 74-112 (193)
107 3oja_A Leucine-rich immune mol 43.5 3.1 0.00011 34.3 -1.3 37 98-141 54-90 (487)
108 1w8a_A SLIT protein; signaling 43.4 4 0.00014 29.0 -0.5 40 97-141 73-112 (192)
109 3zyi_A Leucine-rich repeat-con 42.8 3.6 0.00012 33.2 -0.9 12 130-141 195-206 (452)
110 4g8a_A TOLL-like receptor 4; l 42.8 3.2 0.00011 34.2 -1.2 39 98-141 96-134 (635)
111 4ecn_A Leucine-rich repeat pro 42.2 21 0.00072 32.1 3.9 45 94-141 507-558 (876)
112 3zyj_A Leucine-rich repeat-con 41.9 3.8 0.00013 32.9 -0.9 13 129-141 183-195 (440)
113 3zyi_A Leucine-rich repeat-con 40.0 4 0.00014 32.9 -1.1 12 130-141 146-157 (452)
114 1ogq_A PGIP-2, polygalacturona 39.9 4.6 0.00016 31.0 -0.7 10 132-141 175-184 (313)
115 3bz5_A Internalin-J, INLJ; leu 39.6 9.5 0.00032 31.1 1.1 13 129-141 104-116 (457)
116 1p9a_G Platelet glycoprotein I 39.4 6.1 0.00021 30.1 -0.1 39 98-141 96-134 (290)
117 3t6q_A CD180 antigen; protein- 38.9 3.8 0.00013 34.0 -1.4 40 97-141 76-115 (606)
118 1dce_A Protein (RAB geranylger 38.7 11 0.00038 31.9 1.5 13 129-141 506-518 (567)
119 3rw6_A Nuclear RNA export fact 38.3 5.6 0.00019 30.7 -0.4 17 94-110 188-204 (267)
120 3oja_B Anopheles plasmodium-re 38.0 11 0.00036 31.7 1.2 14 128-141 321-334 (597)
121 4b8c_D Glucose-repressible alc 37.5 6.6 0.00022 34.3 -0.2 13 129-141 291-303 (727)
122 3j0a_A TOLL-like receptor 5; m 35.5 6.2 0.00021 34.7 -0.6 13 129-141 146-158 (844)
123 1dce_A Protein (RAB geranylger 35.4 11 0.00039 31.8 1.0 38 98-141 459-496 (567)
124 3a79_B TLR6, VLRB.59, TOLL-lik 33.7 17 0.00058 30.0 1.8 39 99-141 374-413 (562)
125 2id5_A Lingo-1, leucine rich r 33.3 15 0.00051 29.4 1.3 12 130-141 175-186 (477)
126 4eco_A Uncharacterized protein 32.2 16 0.00055 31.0 1.4 36 101-142 304-341 (636)
127 3a79_B TLR6, VLRB.59, TOLL-lik 32.1 6.3 0.00021 32.6 -1.1 13 129-141 119-131 (562)
128 2xot_A Amphoterin-induced prot 31.8 10 0.00035 29.6 0.1 39 98-141 132-173 (361)
129 3t6q_A CD180 antigen; protein- 30.8 5.9 0.0002 32.9 -1.5 12 130-141 448-459 (606)
130 4b8c_D Glucose-repressible alc 30.4 11 0.00037 32.9 0.0 13 129-141 268-280 (727)
131 4g8a_A TOLL-like receptor 4; l 30.0 7.8 0.00027 31.8 -0.9 13 129-141 171-183 (635)
132 3sb4_A Hypothetical leucine ri 29.8 22 0.00075 27.1 1.7 37 100-141 23-59 (329)
133 3bz5_A Internalin-J, INLJ; leu 27.3 16 0.00056 29.7 0.6 12 130-141 147-158 (457)
134 4ecn_A Leucine-rich repeat pro 20.5 46 0.0016 29.9 2.2 14 128-141 694-707 (876)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=1.5e-15 Score=120.32 Aligned_cols=104 Identities=28% Similarity=0.444 Sum_probs=72.1
Q ss_pred CCCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC--CCcceeeeccchhh------------h-------------
Q 038746 38 RDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLSLNAQSE------------I------------- 90 (147)
Q Consensus 38 ~~~~~~LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~--~~lw~~l~l~~~~~------------~------------- 90 (147)
...++.||+|++.+||+||+.+|+.++++|||+|+.+. +.+|+++++....- +
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~ 85 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQP 85 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSC
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCcccccc
Confidence 34467899999999999999999999999999999875 68899998864310 0
Q ss_pred --------------------h-hchHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 91 --------------------L-SSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 91 --------------------~-~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
. ..+..+..++++|++|+|+ ...+++.....++. |++|++|+|++|..+++
T Consensus 86 ~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~----~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 86 LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE----GLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT----TCBCCHHHHHHHTT-CTTCSEEECTTCBSCCH
T ss_pred chhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc----CcccCHHHHHHHhc-CCCCCEEECCCCCCCCH
Confidence 0 0133445555666666665 23466666666654 67777777777655553
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=8.5e-16 Score=129.89 Aligned_cols=104 Identities=22% Similarity=0.481 Sum_probs=66.0
Q ss_pred CCCCCCCCHHHHHHHHHhCC-hHHHHHHhhhcccccccCCCcceeeeccchhhh--------------------------
Q 038746 38 RDFTGDLPDDCLAYIFQFLG-SGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEI-------------------------- 90 (147)
Q Consensus 38 ~~~~~~LP~elL~~Ifs~L~-~~dl~~~s~VCk~W~~~~~~lw~~l~l~~~~~~-------------------------- 90 (147)
.|.++.||+|+|.+||+||+ .+|+.++++|||+|+.+....|+.+++..++..
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 82 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF 82 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence 36788999999999999999 999999999999999886555665555432110
Q ss_pred -----------hhchHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCC
Q 038746 91 -----------LSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 91 -----------~~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iT 145 (147)
...+..+..++++|++|+|+ ...+++..+..+++.|++|++|+|++|..++
T Consensus 83 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~----~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 83 NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK----RMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEE----SCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred ccccccccchhhHHHHHHHHhCCCCCeEEee----CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 01134455566777777776 2336666666666666666666666664443
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.45 E-value=2.5e-14 Score=121.03 Aligned_cols=66 Identities=24% Similarity=0.549 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHhC-ChHHHHHHhhhcccccccCCCcceeeeccchhhhhhchHHHhhcCcccceecee
Q 038746 43 DLPDDCLAYIFQFL-GSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALR 110 (147)
Q Consensus 43 ~LP~elL~~Ifs~L-~~~dl~~~s~VCk~W~~~~~~lw~~l~l~~~~~~~~~l~~l~~r~~~L~~L~L~ 110 (147)
.||+|+|.+||+|| +.+|+.++++|||+|+.+....|+.+.+..++.. ....+..+|++|++|+|+
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~ 81 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTA--TPDRLSRRFPNLRSLKLK 81 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGS--CHHHHHHHCTTCSEEEEE
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeecccc--ChHHHHHhCCCCeEEEec
Confidence 69999999999999 7999999999999999886544555554433221 123344444444444443
No 4
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.35 E-value=1.7e-13 Score=83.13 Aligned_cols=46 Identities=33% Similarity=0.407 Sum_probs=36.5
Q ss_pred CCCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC--CCcceeee
Q 038746 38 RDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLS 83 (147)
Q Consensus 38 ~~~~~~LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~--~~lw~~l~ 83 (147)
...+..||+|++.+||+||+.+|+.++++|||+|+.+. +.+|+.++
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 45677899999999999999999999999999999875 57898764
No 5
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.72 E-value=1.1e-08 Score=76.64 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=52.2
Q ss_pred eeeeccchhhhhh-chHHHhhc---CcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 80 YRLSLNAQSEILS-SLPSVFSR---FDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 80 ~~l~l~~~~~~~~-~l~~l~~r---~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
+.++++.|..+++ .+..+..- +++|++|+|+ +|..|||+++..++ +|++|++|+|++|.+|||
T Consensus 88 ~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls---~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 88 EKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII---SCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE---SCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCC
T ss_pred CEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC---CCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCc
Confidence 7888888876653 45556552 5789999999 79999999999998 599999999999999998
No 6
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.69 E-value=2.4e-09 Score=86.16 Aligned_cols=45 Identities=22% Similarity=0.427 Sum_probs=39.0
Q ss_pred CCCCCCCCHHHHHHHHHhCChHHHH-HHhhhcccccccC--CCcceee
Q 038746 38 RDFTGDLPDDCLAYIFQFLGSGDRK-RCSLVCKRWLRVD--GGSRYRL 82 (147)
Q Consensus 38 ~~~~~~LP~elL~~Ifs~L~~~dl~-~~s~VCk~W~~~~--~~lw~~l 82 (147)
...++.||+|+|.+||++|+.++|. +|++|||+|++++ +.+|+..
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 3567789999999999999999999 9999999999875 4666654
No 7
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.65 E-value=6.4e-09 Score=77.85 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=51.3
Q ss_pred eeeeccchhhhh-hchHHHhhcCcccceeceeccCCCCcccHHHHHHHHH---hCCCCcEEeccCCCCCCCC
Q 038746 80 YRLSLNAQSEIL-SSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKLRGCREITDH 147 (147)
Q Consensus 80 ~~l~l~~~~~~~-~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~---~Cp~L~~L~L~~C~~iTD~ 147 (147)
+.++++.+. ++ ..+..+ ..|++|++|+|+ +|..|||++++.|+. .|++|++|+|++|.+|||+
T Consensus 64 ~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~---~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 64 QAIDATDSC-IMSIGFDHM-EGLQYVEKIRLC---KCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp EEEEEESCC-CCGGGGGGG-TTCSCCCEEEEE---SCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeC---CCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 566666654 33 234444 689999999999 799999999999997 4889999999999999984
No 8
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.62 E-value=1.8e-09 Score=86.95 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC--CCcceeeec
Q 038746 39 DFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLSL 84 (147)
Q Consensus 39 ~~~~~LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~--~~lw~~l~l 84 (147)
..++.||+|++++||+||+++|++++++|||.|+.++ +.+|+.+-.
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~ 50 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL 50 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence 3467899999999999999999999999999999976 578887644
No 9
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.52 E-value=4.6e-09 Score=85.23 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=42.8
Q ss_pred CCCCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC---CCcceeeecc
Q 038746 37 ARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD---GGSRYRLSLN 85 (147)
Q Consensus 37 ~~~~~~~LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~---~~lw~~l~l~ 85 (147)
.+|.+..||+|++.+||+||+.++|+++++|||+|+.++ +.+|+.+.+.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~ 62 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLIS 62 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 467888999999999999999999999999999999864 4689877643
No 10
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.48 E-value=7.4e-09 Score=84.08 Aligned_cols=48 Identities=33% Similarity=0.533 Sum_probs=42.7
Q ss_pred CCCCCCCCCHH----HHHHHHHhCChHHHHHHhhhcccccccC--CCcceeeec
Q 038746 37 ARDFTGDLPDD----CLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLSL 84 (147)
Q Consensus 37 ~~~~~~~LP~e----lL~~Ifs~L~~~dl~~~s~VCk~W~~~~--~~lw~~l~l 84 (147)
..|.+..||+| ++.+||+||+.++|.++++|||+|+.++ ..+|+.+-.
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~ 60 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIE 60 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 36788899999 9999999999999999999999999876 788987743
No 11
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.46 E-value=2.3e-08 Score=81.09 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=41.7
Q ss_pred CCCCCCCCCHHHHHHHHHhCChHHHHHHhhhcccccccC--CCcceeee
Q 038746 37 ARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVD--GGSRYRLS 83 (147)
Q Consensus 37 ~~~~~~~LP~elL~~Ifs~L~~~dl~~~s~VCk~W~~~~--~~lw~~l~ 83 (147)
..|.++.||+|++.+||+||+.+||.++++|||+|+.++ ..+|+.+.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~ 63 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC 63 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence 468899999999999999999999999999999999876 45787654
No 12
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.46 E-value=0.00034 Score=58.70 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=48.6
Q ss_pred eeeeccchhhhhhchHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCCC
Q 038746 80 YRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDH 147 (147)
Q Consensus 80 ~~l~l~~~~~~~~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD~ 147 (147)
+.+++..+.--...+..+...+++|++|+|+ +|. +++.++..++..|++|++|+|++|. +|+.
T Consensus 466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~---~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMR---GCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp CEEEECSCCSSHHHHHHHHTCCTTCCEEEEE---SCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred eEeeccCCCCCHHHHHHHHhcCcccCeeecc---CCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 5666654421112466677888999999999 565 8999999999999999999999996 8863
No 13
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.31 E-value=0.00066 Score=52.97 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=32.8
Q ss_pred hHHHhhcCc-ccceeceeccCCCC-cccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 94 LPSVFSRFD-SVTKLALRCDRKSI-SLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 94 l~~l~~r~~-~L~~L~L~c~r~c~-~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
+..+...++ +|++|+|+ +|. .++|.++..+...|++|++|+|++|..+++
T Consensus 186 ~~~~~~~l~~~L~~L~l~---~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLS---GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp HHHHHHHSCTTCCEEECC---SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred HHHHHHhcccCCCEEEeC---CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 445556666 77777776 344 567777766666777777777777755554
No 14
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.20 E-value=0.0004 Score=58.22 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=48.2
Q ss_pred eeeeccchhhhhhchHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 80 YRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 80 ~~l~l~~~~~~~~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
+.+++..+.-....+..+...|++|++|+|+ +|..+++.++..++..|++|++|+|++|. ++|
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~---~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~ 170 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLS---SCEGFSTDGLAAIAATCRNLKELDLRESD-VDD 170 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEE---SCEEEEHHHHHHHHHHCTTCCEEECTTCE-EEC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC---CcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCC
Confidence 5666665431123355566679999999999 67789999999999999999999999985 443
No 15
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.25 E-value=0.0045 Score=45.18 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=44.1
Q ss_pred eeeeccchhhhh----hchHHHhhcCcccceeceeccCCCCcccHHHHHHHHH---hCCCCcEEeccCCCCCCC
Q 038746 80 YRLSLNAQSEIL----SSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKLRGCREITD 146 (147)
Q Consensus 80 ~~l~l~~~~~~~----~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~---~Cp~L~~L~L~~C~~iTD 146 (147)
+.+++.....+. ..+.......++|++|+|+ ...|+|++...+++ .++.|++|+|++| .|+|
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls----~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV----GTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT----TSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc----CCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 667776541221 2345555667889999998 56799998887764 4678999999987 5765
No 16
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.71 E-value=0.01 Score=48.16 Aligned_cols=46 Identities=24% Similarity=0.233 Sum_probs=30.2
Q ss_pred HHhhcCcccceeceeccCCCCcccHHHHHHHHH----hCCCCcEEeccCCCCCCC
Q 038746 96 SVFSRFDSVTKLALRCDRKSISLDDDALVLISL----RCQKLTRLKLRGCREITD 146 (147)
Q Consensus 96 ~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~----~Cp~L~~L~L~~C~~iTD 146 (147)
.+...+.+|++|+|+ ...++|.+...++. .+++|++|+|++| .|++
T Consensus 120 ~l~~~L~~L~~L~Ls----~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~ 169 (372)
T 3un9_A 120 TLLPVFLRARKLGLQ----LNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTA 169 (372)
T ss_dssp HTHHHHHTEEEEECC----SSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHH
T ss_pred HHHHHHHhccHhhcC----CCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCCh
Confidence 344444567777776 45677877777764 3577888888887 4553
No 17
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.48 E-value=0.015 Score=42.32 Aligned_cols=62 Identities=10% Similarity=0.209 Sum_probs=45.0
Q ss_pred eeeeccchhh---hhhchHHHhhcCcccceeceeccCCCCcccHHHHHHHHH---hCCCCcEEec--cCCCCCCC
Q 038746 80 YRLSLNAQSE---ILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKL--RGCREITD 146 (147)
Q Consensus 80 ~~l~l~~~~~---~~~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~---~Cp~L~~L~L--~~C~~iTD 146 (147)
+.++++...- -...+.......++|++|+|+ ...|+|++...+++ .++.|++|+| +++ .|+|
T Consensus 68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~----~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~ 137 (185)
T 1io0_A 68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE----SNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGN 137 (185)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC----SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCH
T ss_pred CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc----CCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCH
Confidence 5677765421 112355556677899999998 67899999999886 4678999999 554 6765
No 18
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.09 E-value=0.016 Score=47.07 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=35.6
Q ss_pred cCcccceeceeccCCCCcccHHHHHHHH---HhCCCCcEEeccCCCCCCC
Q 038746 100 RFDSVTKLALRCDRKSISLDDDALVLIS---LRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 100 r~~~L~~L~L~c~r~c~~ItD~~L~~ia---~~Cp~L~~L~L~~C~~iTD 146 (147)
.+++|+.|+|+ +..++|.+...++ +.+++|+.|+|++| .|||
T Consensus 277 ~~~~L~~LdLs----~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d 321 (362)
T 2ra8_A 277 ILPQLETMDIS----AGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSD 321 (362)
T ss_dssp SGGGCSEEECC----SSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred cCCCCCEEECC----CCCCChHHHHHHHhhcccCCcceEEECCCC-cCCH
Confidence 46899999998 6679999988887 45899999999988 5876
No 19
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=95.05 E-value=0.051 Score=43.86 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=17.7
Q ss_pred ccceeceeccCCCCcccHHHHHHHH---HhCCCCcEEeccCC
Q 038746 103 SVTKLALRCDRKSISLDDDALVLIS---LRCQKLTRLKLRGC 141 (147)
Q Consensus 103 ~L~~L~L~c~r~c~~ItD~~L~~ia---~~Cp~L~~L~L~~C 141 (147)
+|++|+|+ ...+++.+...+. ..+++|++|+|++|
T Consensus 86 ~L~~L~L~----~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 123 (461)
T 1z7x_W 86 KIQKLSLQ----NCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123 (461)
T ss_dssp CCCEEECT----TSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred ceeEEEcc----CCCCCHHHHHHHHHHHccCCceeEEECCCC
Confidence 46666665 3345554433332 34556666666655
No 20
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.02 E-value=0.068 Score=43.19 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=19.1
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHH---hCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~---~Cp~L~~L~L~~C 141 (147)
...+++|++|+|+ ...|+|.++..++. .+++|++|+|++|
T Consensus 179 L~~~~~L~~L~Ls----~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 179 LAGNTSVTHLSLL----HTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHTCSSCCEEECT----TSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HhcCCCcCEEeCC----CCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 3445566666665 33344444444432 2344555555444
No 21
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=93.96 E-value=0.069 Score=42.48 Aligned_cols=12 Identities=25% Similarity=0.152 Sum_probs=5.2
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 273 ~~~L~~L~L~~n 284 (386)
T 2ca6_A 273 NIGLQTLRLQYN 284 (386)
T ss_dssp SCCCCEEECCSS
T ss_pred CCCeEEEECcCC
Confidence 344444444443
No 22
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=93.70 E-value=0.068 Score=43.09 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=21.7
Q ss_pred HHhhcCcccceeceeccCCCCcccHHHHHHHHH----hCCCCcEEeccCC
Q 038746 96 SVFSRFDSVTKLALRCDRKSISLDDDALVLISL----RCQKLTRLKLRGC 141 (147)
Q Consensus 96 ~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~----~Cp~L~~L~L~~C 141 (147)
.....+++|++|+|+ ...+++.++..++. .+++|++|+|++|
T Consensus 221 ~~l~~~~~L~~L~Ls----~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 221 GIVASKASLRELALG----SNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHCTTCCEEECC----SSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHhCCCccEEecc----CCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 333445556666665 23455555555443 2455555555555
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=93.25 E-value=0.043 Score=39.68 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=26.6
Q ss_pred cCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 100 RFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 100 r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
.+++|+.|+|+ ...+++.....+. .+++|++|+|++|..+++
T Consensus 110 ~l~~L~~L~Ls----~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~ 151 (197)
T 4ezg_A 110 GLTSLTLLDIS----HSAHDDSILTKIN-TLPKVNSIDLSYNGAITD 151 (197)
T ss_dssp TCTTCCEEECC----SSBCBGGGHHHHT-TCSSCCEEECCSCTBCCC
T ss_pred CCCCCCEEEec----CCccCcHhHHHHh-hCCCCCEEEccCCCCccc
Confidence 44566666665 4456665555554 477888888887754554
No 24
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.19 E-value=0.071 Score=40.00 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=29.6
Q ss_pred hHHHhhcCcccceeceeccCCCCcccHHHHHHHHH---hCCCCcEEeccCCCCCCC
Q 038746 94 LPSVFSRFDSVTKLALRCDRKSISLDDDALVLISL---RCQKLTRLKLRGCREITD 146 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~---~Cp~L~~L~L~~C~~iTD 146 (147)
+.........|+.|+|+ ...|+|.+-..||+ .-..|++|+|+++ .|+|
T Consensus 62 la~aL~~N~~L~~L~L~----~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~ 112 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLA----NTAISDSEARGLIELIETSPSLRVLNVESN-FLTP 112 (197)
T ss_dssp HHHHHTTCSCCCEEECT----TSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCH
T ss_pred HHHHHhhCCCcCEEEcc----CCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCH
Confidence 44444455667777776 55677776666553 4556777777664 4554
No 25
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=92.82 E-value=0.16 Score=40.35 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=16.0
Q ss_pred CcccceeceeccCCCCcccHHHHHHHH---HhCCCCcEEeccCC
Q 038746 101 FDSVTKLALRCDRKSISLDDDALVLIS---LRCQKLTRLKLRGC 141 (147)
Q Consensus 101 ~~~L~~L~L~c~r~c~~ItD~~L~~ia---~~Cp~L~~L~L~~C 141 (147)
+++|+.|+|+ ...+++.+...++ ..+++|++|+|++|
T Consensus 215 ~~~L~~L~Ls----~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 215 CQELKVLDLQ----DNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp CTTCCEEECC----SSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred CCCccEEECc----CCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 3444444444 2334444433333 23444555555544
No 26
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=91.48 E-value=0.12 Score=40.89 Aligned_cols=62 Identities=19% Similarity=0.109 Sum_probs=34.1
Q ss_pred eeeeccchhhh---hhchHHHhhcC-cccceeceeccCCCCcccHHHHHHHH---HhC-CCCcEEeccCCCCCCC
Q 038746 80 YRLSLNAQSEI---LSSLPSVFSRF-DSVTKLALRCDRKSISLDDDALVLIS---LRC-QKLTRLKLRGCREITD 146 (147)
Q Consensus 80 ~~l~l~~~~~~---~~~l~~l~~r~-~~L~~L~L~c~r~c~~ItD~~L~~ia---~~C-p~L~~L~L~~C~~iTD 146 (147)
+.++++...-- ...+..+.... ++|++|+|+ ...+++.+...++ ..+ ++|++|+|++|. +++
T Consensus 54 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls----~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~ 123 (362)
T 3goz_A 54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS----GNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSS 123 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC----SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGG
T ss_pred eEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc----CCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCc
Confidence 55666543211 12233333443 788888887 3445554444333 344 788888888873 543
No 27
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=90.91 E-value=0.095 Score=36.62 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=25.6
Q ss_pred hHHHhhcCcccceeceeccCCCCcccHH-HHHHHHHhCCCCcEEeccCC
Q 038746 94 LPSVFSRFDSVTKLALRCDRKSISLDDD-ALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~r~c~~ItD~-~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+...+++|+.|+|+ ...+++- .+..+ ..+++|+.|+|++|
T Consensus 87 ~~~~~~~l~~L~~L~Ls----~N~l~~~~~~~~l-~~l~~L~~L~l~~N 130 (168)
T 2ell_A 87 LDMLAEKLPNLTHLNLS----GNKLKDISTLEPL-KKLECLKSLDLFNC 130 (168)
T ss_dssp CCHHHHHCTTCCEEECB----SSSCCSSGGGGGG-SSCSCCCEEECCSS
T ss_pred HHHHHhhCCCCCEEecc----CCccCcchhHHHH-hcCCCCCEEEeeCC
Confidence 44555667777777777 3345442 11222 35777777777776
No 28
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=90.64 E-value=0.15 Score=34.85 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=38.9
Q ss_pred eeeeccchhhhhhchHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCC
Q 038746 80 YRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 80 ~~l~l~~~~~~~~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iT 145 (147)
+.++++... +...++.....+++|+.|+|+ ...+++-........+++|++|+|++| .++
T Consensus 67 ~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls----~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~ 126 (149)
T 2je0_A 67 KKLELSDNR-VSGGLEVLAEKCPNLTHLNLS----GNKIKDLSTIEPLKKLENLKSLDLFNC-EVT 126 (149)
T ss_dssp CEEECCSSC-CCSCTHHHHHHCTTCCEEECT----TSCCCSHHHHGGGGGCTTCCEEECTTC-GGG
T ss_pred CEEECCCCc-ccchHHHHhhhCCCCCEEECC----CCcCCChHHHHHHhhCCCCCEEeCcCC-ccc
Confidence 455554432 223366667778999999998 455766433233456999999999988 444
No 29
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=90.55 E-value=0.15 Score=34.80 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=20.3
Q ss_pred hhcCcccceeceeccCCCCcccHHHH--HHHHHhCCCCcEEecc
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDAL--VLISLRCQKLTRLKLR 139 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L--~~ia~~Cp~L~~L~L~ 139 (147)
...+++|+.|+|+ ...+++..- ..+...+++|+.|+++
T Consensus 109 ~~~l~~L~~L~l~----~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 109 LKKLENLKSLDLF----NCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGGCTTCCEEECT----TCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HhhCCCCCEEeCc----CCcccchHHHHHHHHHHCCCcccccCC
Confidence 4556667777776 223443221 1234456777777665
No 30
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=90.11 E-value=0.18 Score=40.75 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=28.1
Q ss_pred cCcccceeceeccCCCCcccHHHHHHHHH--hCCCCcEEeccCCCCCCC
Q 038746 100 RFDSVTKLALRCDRKSISLDDDALVLISL--RCQKLTRLKLRGCREITD 146 (147)
Q Consensus 100 r~~~L~~L~L~c~r~c~~ItD~~L~~ia~--~Cp~L~~L~L~~C~~iTD 146 (147)
.|++|+.|+|+ ...++|.+...++. .+|+|++|+|+.+ .++|
T Consensus 250 ~~p~Lr~L~L~----~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d 293 (362)
T 2ra8_A 250 RFPNLKWLGIV----DAEEQNVVVEMFLESDILPQLETMDISAG-VLTD 293 (362)
T ss_dssp TCTTCCEEEEE----SCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBH
T ss_pred CCCCcCEEeCC----CCCCchHHHHHHHhCccCCCCCEEECCCC-CCCh
Confidence 35666666665 34567777667775 5778888888654 5654
No 31
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=89.73 E-value=0.21 Score=39.44 Aligned_cols=19 Identities=11% Similarity=-0.118 Sum_probs=11.1
Q ss_pred CCCCCCCHHHHHHHHHhCC
Q 038746 39 DFTGDLPDDCLAYIFQFLG 57 (147)
Q Consensus 39 ~~~~~LP~elL~~Ifs~L~ 57 (147)
..+...+.+.+...|+.++
T Consensus 32 n~l~~~~~~~l~~~l~~~~ 50 (362)
T 3goz_A 32 NNLYSISTVELIQAFANTP 50 (362)
T ss_dssp SCGGGSCHHHHHHHHHTCC
T ss_pred CCCChHHHHHHHHHHHhCC
Confidence 3345566666666666444
No 32
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.60 E-value=0.44 Score=35.63 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=43.8
Q ss_pred ceeeeccchhh---hhhchHHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCC---CCcEEeccCCC
Q 038746 79 RYRLSLNAQSE---ILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQ---KLTRLKLRGCR 142 (147)
Q Consensus 79 w~~l~l~~~~~---~~~~l~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp---~L~~L~L~~C~ 142 (147)
-+.+++....- -...+...+.....|++|+|+ ...|+|+|...|++... .|++|+|+++.
T Consensus 72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~----~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVE----SNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC----SSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC----CCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 36677654421 124566777778899999998 77899999999987543 59999998763
No 33
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=87.98 E-value=0.31 Score=35.00 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=30.5
Q ss_pred HHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 95 PSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 95 ~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
......+++|+.|+|+ ++..+++-. ....+++|++|+|++| ++++
T Consensus 129 ~~~l~~l~~L~~L~L~---~n~~i~~~~---~l~~l~~L~~L~l~~n-~i~~ 173 (197)
T 4ezg_A 129 LTKINTLPKVNSIDLS---YNGAITDIM---PLKTLPELKSLNIQFD-GVHD 173 (197)
T ss_dssp HHHHTTCSSCCEEECC---SCTBCCCCG---GGGGCSSCCEEECTTB-CCCC
T ss_pred HHHHhhCCCCCEEEcc---CCCCccccH---hhcCCCCCCEEECCCC-CCcC
Confidence 4455678899999998 444355432 2346888999999887 4554
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=86.31 E-value=0.56 Score=36.27 Aligned_cols=42 Identities=26% Similarity=0.354 Sum_probs=26.1
Q ss_pred hcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
..+++|+.|+|+ ...+++.....+. .+++|++|+|++|. +++
T Consensus 284 ~~l~~L~~L~L~----~n~l~~~~~~~l~-~l~~L~~L~L~~n~-l~~ 325 (347)
T 4fmz_A 284 NNLSQLNSLFLN----NNQLGNEDMEVIG-GLTNLTTLFLSQNH-ITD 325 (347)
T ss_dssp GGCTTCSEEECC----SSCCCGGGHHHHH-TCTTCSEEECCSSS-CCC
T ss_pred cCCCCCCEEECc----CCcCCCcChhHhh-ccccCCEEEccCCc-ccc
Confidence 445666666666 3345555544444 47888888888873 543
No 35
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=83.17 E-value=1.3 Score=34.01 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=22.8
Q ss_pred cCcccceeceeccCCCCccc--HHHHHHHHHhCCCCcEEeccCC
Q 038746 100 RFDSVTKLALRCDRKSISLD--DDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 100 r~~~L~~L~L~c~r~c~~It--D~~L~~ia~~Cp~L~~L~L~~C 141 (147)
.+++|+.|+|+ ...++ ......+...+++|++|+|+++
T Consensus 195 ~l~~L~~L~Ls----~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 195 KFPAIQNLALR----NTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp SSCCCCSCBCC----SSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred cCCCCCEEECC----CCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 45666666666 33444 3333334556788888888776
No 36
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=81.99 E-value=0.7 Score=35.95 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=27.7
Q ss_pred HhhcCcccceeceeccCCCCcccH-HHHHHHHHhCCCCcEEeccCCCCCC
Q 038746 97 VFSRFDSVTKLALRCDRKSISLDD-DALVLISLRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~r~c~~ItD-~~L~~ia~~Cp~L~~L~L~~C~~iT 145 (147)
+...+++|+.|+|+ ...|++ .++..+...+++|+.|+|++- +|+
T Consensus 165 ~~~~l~~L~~L~Ls----~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~ 209 (267)
T 3rw6_A 165 IEENIPELLSLNLS----NNRLYRLDDMSSIVQKAPNLKILNLSGN-ELK 209 (267)
T ss_dssp HHHHCTTCCEEECT----TSCCCCCGGGTTHHHHSTTCCEEECTTS-CCC
T ss_pred HHhhCCCCCEEECC----CCCCCCCccchhHHhhCCCCCEEECCCC-ccC
Confidence 33567888888887 344443 233344567888888888764 454
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=81.18 E-value=0.28 Score=34.10 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=27.8
Q ss_pred HhhcCcccceeceeccCCCCcccHHHH--HHHHHhCCCCcEEeccCCC
Q 038746 97 VFSRFDSVTKLALRCDRKSISLDDDAL--VLISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~r~c~~ItD~~L--~~ia~~Cp~L~~L~L~~C~ 142 (147)
.+..+++|+.|+|+ ...+++..- ..+...+++|+.|++++|.
T Consensus 115 ~l~~l~~L~~L~l~----~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 115 PLKKLECLKSLDLF----NCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp GGSSCSCCCEEECC----SSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HHhcCCCCCEEEee----CCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 34567888888887 334443321 2345578899999998884
No 38
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=79.85 E-value=2.5 Score=32.36 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=23.5
Q ss_pred hcCcccceeceeccCCCCccc--HHHHHHHHHhCCCCcEEeccCC
Q 038746 99 SRFDSVTKLALRCDRKSISLD--DDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~It--D~~L~~ia~~Cp~L~~L~L~~C 141 (147)
..+++|++|+|+ ...++ ......+...+++|++|+|+++
T Consensus 198 ~~l~~L~~L~L~----~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 198 LKFPTLQVLALR----NAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp TSCTTCCEEECT----TSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred ccCCCCCEEECC----CCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 455667777776 33454 2333445556777777777776
No 39
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=73.64 E-value=1.1 Score=34.43 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=22.4
Q ss_pred cCcccceeceeccCCCCcccHHHHHHHH--HhCCCCcEEeccCCCCCC
Q 038746 100 RFDSVTKLALRCDRKSISLDDDALVLIS--LRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 100 r~~~L~~L~L~c~r~c~~ItD~~L~~ia--~~Cp~L~~L~L~~C~~iT 145 (147)
.+++|+.|+|+ ++.-.++.++..-. ..+++|++|+|++| +++
T Consensus 167 ~l~~L~~L~Ls---~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 210 (310)
T 4glp_A 167 AFPALTSLDLS---DNPGLGERGLMAALCPHKFPAIQNLALRNT-GME 210 (310)
T ss_dssp CCTTCCEEECC---SCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCC
T ss_pred cCCCCCEEECC---CCCCccchhhhHHHhhhcCCCCCEEECCCC-CCC
Confidence 34455555555 23223333332222 46788888888887 444
No 40
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=71.56 E-value=1.5 Score=33.70 Aligned_cols=15 Identities=27% Similarity=0.144 Sum_probs=7.3
Q ss_pred HHhhcCcccceecee
Q 038746 96 SVFSRFDSVTKLALR 110 (147)
Q Consensus 96 ~l~~r~~~L~~L~L~ 110 (147)
.+...+++|++|+|+
T Consensus 28 ~~~~~~~~L~~L~L~ 42 (317)
T 3o53_A 28 SLRQSAWNVKELDLS 42 (317)
T ss_dssp HHHTTGGGCSEEECT
T ss_pred HHhccCCCCCEEECc
Confidence 334444455555554
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=70.01 E-value=1.6 Score=34.92 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=7.2
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 152 ~l~~L~~L~L~~n 164 (455)
T 3v47_A 152 NMRRFHVLDLTFN 164 (455)
T ss_dssp GCTTCCEEECTTC
T ss_pred CCCcccEEeCCCC
Confidence 4555555555554
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=69.78 E-value=0.62 Score=35.94 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=19.1
Q ss_pred CcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 101 FDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 101 ~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+++|+.|+|+ ...+++.....+...+++|++|+|++|
T Consensus 143 l~~L~~L~Ls----~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 143 RSRVQYLDLK----LNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp GSSEEEEECT----TSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred cCCCCEEECC----CCCCCcccHHHHhhccCcCCEEECCCC
Confidence 4556666665 233443333334445566666666665
No 43
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=69.67 E-value=1.3 Score=30.97 Aligned_cols=40 Identities=23% Similarity=0.134 Sum_probs=24.7
Q ss_pred HhhcCcccceeceeccCCCCcccHHH-HHHHHHhCCCCcEEeccCC
Q 038746 97 VFSRFDSVTKLALRCDRKSISLDDDA-LVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~r~c~~ItD~~-L~~ia~~Cp~L~~L~L~~C 141 (147)
++..+++|+.|+|+ ...|++-. +..+ ..+++|+.|+|+++
T Consensus 83 ~~~~l~~L~~L~L~----~N~i~~~~~~~~l-~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 83 LDQALPDLTELILT----NNSLVELGDLDPL-ASLKSLTYLCILRN 123 (176)
T ss_dssp HHHHCTTCCEEECC----SCCCCCGGGGGGG-GGCTTCCEEECCSS
T ss_pred hhhcCCCCCEEECC----CCcCCcchhhHhh-hcCCCCCEEEecCC
Confidence 34667788888887 33443311 2222 36888888888876
No 44
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=69.31 E-value=1.8 Score=32.61 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=7.0
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|+.|+|+++
T Consensus 83 ~l~~L~~L~L~~N 95 (263)
T 1xeu_A 83 DLTKLEELSVNRN 95 (263)
T ss_dssp TCSSCCEEECCSS
T ss_pred cCCCCCEEECCCC
Confidence 4555555555554
No 45
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=69.22 E-value=1.9 Score=33.20 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=23.7
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iT 145 (147)
...+++|+.|+|+ ...+++- .. ...+++|++|+|++| +++
T Consensus 81 ~~~l~~L~~L~L~----~n~l~~~--~~-~~~l~~L~~L~l~~n-~l~ 120 (308)
T 1h6u_A 81 LKNLTKITELELS----GNPLKNV--SA-IAGLQSIKTLDLTST-QIT 120 (308)
T ss_dssp GTTCCSCCEEECC----SCCCSCC--GG-GTTCTTCCEEECTTS-CCC
T ss_pred HccCCCCCEEEcc----CCcCCCc--hh-hcCCCCCCEEECCCC-CCC
Confidence 4566777777777 2233331 12 235778888888877 344
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=69.17 E-value=0.57 Score=37.58 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=28.8
Q ss_pred HHhhcCcccceeceeccCCCCcccHHHHHH-HHHhCCCCcEEeccCC
Q 038746 96 SVFSRFDSVTKLALRCDRKSISLDDDALVL-ISLRCQKLTRLKLRGC 141 (147)
Q Consensus 96 ~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~-ia~~Cp~L~~L~L~~C 141 (147)
..+..+++|+.|+|+ ...+++..+.. ....+++|++|+|++|
T Consensus 97 ~~~~~l~~L~~L~L~----~n~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 97 GAFNGLANLEVLTLT----QCNLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp TTTTTCTTCCEEECT----TSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred hhccCcccCCEEeCC----CCCCCccccCcccccCcccCCEEECCCC
Confidence 344567888888887 44566544443 2345889999999987
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=69.16 E-value=1.1 Score=34.84 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=10.1
Q ss_pred HhCCCCcEEeccCCCC
Q 038746 128 LRCQKLTRLKLRGCRE 143 (147)
Q Consensus 128 ~~Cp~L~~L~L~~C~~ 143 (147)
..+++|++|+|++|..
T Consensus 147 ~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 147 ASLNRLRELSIRACPE 162 (328)
T ss_dssp GGCTTCCEEEEEEETT
T ss_pred hcCcCCCEEECCCCCC
Confidence 3466777777776643
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=68.71 E-value=1.7 Score=33.37 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=5.2
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 131 l~~L~~L~l~~n 142 (347)
T 4fmz_A 131 LTKMYSLNLGAN 142 (347)
T ss_dssp CTTCCEEECTTC
T ss_pred CCceeEEECCCC
Confidence 444444444444
No 49
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=67.56 E-value=1.9 Score=32.99 Aligned_cols=13 Identities=31% Similarity=0.202 Sum_probs=6.4
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 176 ~l~~L~~L~L~~N 188 (291)
T 1h6t_A 176 GLTKLQNLYLSKN 188 (291)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCccCEEECCCC
Confidence 3455555555444
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=67.26 E-value=0.8 Score=34.50 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=19.9
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...++.-.-. ....+++|++|+|+++
T Consensus 125 ~~~l~~L~~L~l~----~n~l~~~~~~-~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 125 FRGLAALQYLYLQ----DNALQALPDD-TFRDLGNLTHLFLHGN 163 (285)
T ss_dssp TTTCTTCCEEECC----SSCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred hhCCcCCCEEECC----CCcccccCHh-HhccCCCccEEECCCC
Confidence 3445666666666 2222211111 1134677777777776
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=67.07 E-value=1.9 Score=33.55 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=6.8
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 147 ~l~~L~~L~l~~n 159 (353)
T 2z80_A 147 HLTKLQILRVGNM 159 (353)
T ss_dssp TCTTCCEEEEEES
T ss_pred cCCCCcEEECCCC
Confidence 3455555555554
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=66.74 E-value=6.1 Score=32.26 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=7.9
Q ss_pred HhCCCCcEEeccCC
Q 038746 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~Cp~L~~L~L~~C 141 (147)
..+++|++|+|++|
T Consensus 384 ~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 384 LTLKNLTSLDISRN 397 (549)
T ss_dssp GGCTTCCEEECTTC
T ss_pred hcCCCCCEEECCCC
Confidence 34555666666555
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=66.40 E-value=0.98 Score=33.99 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=24.1
Q ss_pred HhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
.+..+++|+.|+|+ ++..+++-.-..+ ..+++|++|+|++|
T Consensus 75 ~~~~l~~L~~L~l~---~n~~l~~~~~~~~-~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 75 AFTGLALLEQLDLS---DNAQLRSVDPATF-HGLGRLHTLHLDRC 115 (285)
T ss_dssp TTTTCTTCCEEECC---SCTTCCCCCTTTT-TTCTTCCEEECTTS
T ss_pred hcCCccCCCEEeCC---CCCCccccCHHHh-cCCcCCCEEECCCC
Confidence 34556788888887 3322332111112 35788888888887
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=65.79 E-value=0.54 Score=35.79 Aligned_cols=13 Identities=15% Similarity=-0.069 Sum_probs=7.2
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|+.|+|+++
T Consensus 221 ~l~~L~~L~L~~N 233 (306)
T 2z66_A 221 CLNSLQVLDYSLN 233 (306)
T ss_dssp TCTTCCEEECTTS
T ss_pred CcccCCEeECCCC
Confidence 3555555555555
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=65.57 E-value=0.65 Score=38.27 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=7.1
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 492 ~l~~L~~L~l~~n 504 (570)
T 2z63_A 492 SLSSLQVLNMASN 504 (570)
T ss_dssp TCTTCCEEECCSS
T ss_pred cccCCCEEeCCCC
Confidence 3555555555555
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=65.38 E-value=0.86 Score=34.15 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=19.7
Q ss_pred hcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
..+++|+.|+|+ ...+++..+......+++|++|+|++|
T Consensus 121 ~~l~~L~~L~l~----~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 121 GHLKTLKELNVA----HNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTCTTCCEEECC----SSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred ccCCCCCEEECc----CCccceecCchhhccCCCCCEEECCCC
Confidence 344566666665 222332111112234677777777766
No 57
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=65.07 E-value=2.3 Score=30.28 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=6.8
Q ss_pred HHHhCCCCcEEe
Q 038746 126 ISLRCQKLTRLK 137 (147)
Q Consensus 126 ia~~Cp~L~~L~ 137 (147)
+...+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 344566666665
No 58
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=65.05 E-value=1.8 Score=30.28 Aligned_cols=41 Identities=10% Similarity=0.234 Sum_probs=27.6
Q ss_pred hhcCcccceeceeccCCCCcccH--HHHHHHHHhCCCCcEEeccCCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDD--DALVLISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD--~~L~~ia~~Cp~L~~L~L~~C~ 142 (147)
...+++|+.|+|+ ...+++ ..-..+...+|+|+.|+++++.
T Consensus 109 l~~l~~L~~L~l~----~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 109 LASLKSLTYLCIL----RNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGCTTCCEEECC----SSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhcCCCCCEEEec----CCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 4567899999998 333332 1122345679999999998864
No 59
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=64.90 E-value=2.7 Score=32.04 Aligned_cols=13 Identities=38% Similarity=0.437 Sum_probs=8.6
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|+.|+|++|
T Consensus 154 ~l~~L~~L~L~~N 166 (291)
T 1h6t_A 154 RLTKLDTLSLEDN 166 (291)
T ss_dssp GCTTCSEEECCSS
T ss_pred cCCCCCEEEccCC
Confidence 4666666666665
No 60
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=62.77 E-value=2.4 Score=31.86 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=19.6
Q ss_pred hcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
..+++|+.|+|+ ...+++- .. ...+++|+.|+|+++
T Consensus 125 ~~l~~L~~L~Ls----~N~i~~~--~~-l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 125 IHLKNLEILSIR----NNKLKSI--VM-LGFLSKLEVLDLHGN 160 (263)
T ss_dssp TTCTTCCEEECT----TSCCCBC--GG-GGGCTTCCEEECTTS
T ss_pred cCcccccEEECC----CCcCCCC--hH-HccCCCCCEEECCCC
Confidence 445666777666 2334332 11 234667777777665
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=62.18 E-value=2.6 Score=32.70 Aligned_cols=14 Identities=50% Similarity=0.892 Sum_probs=7.9
Q ss_pred hCCCCcEEeccCCC
Q 038746 129 RCQKLTRLKLRGCR 142 (147)
Q Consensus 129 ~Cp~L~~L~L~~C~ 142 (147)
.+++|++|+|++|.
T Consensus 227 ~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 227 HLPKLEELDLRGCT 240 (328)
T ss_dssp GCTTCCEEECTTCT
T ss_pred cCCCCCEEECcCCc
Confidence 45556666666553
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=62.06 E-value=2.8 Score=31.38 Aligned_cols=38 Identities=18% Similarity=0.083 Sum_probs=19.5
Q ss_pred hcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
..+++|+.|+|+ ...+++-.- .....+++|++|+|++|
T Consensus 82 ~~l~~L~~L~L~----~n~l~~~~~-~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 82 KELTNLTYLILT----GNQLQSLPN-GVFDKLTNLKELVLVEN 119 (272)
T ss_dssp TTCTTCCEEECT----TSCCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred cCCCCCCEEECC----CCccCccCh-hHhcCCcCCCEEECCCC
Confidence 445666666666 223331110 11234677777777776
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=61.77 E-value=3.1 Score=31.89 Aligned_cols=13 Identities=38% Similarity=0.322 Sum_probs=6.1
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 171 ~l~~L~~L~l~~n 183 (308)
T 1h6u_A 171 NLSKLTTLKADDN 183 (308)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 3444444444444
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=61.37 E-value=0.7 Score=35.14 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=5.9
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|++|+|+++
T Consensus 198 l~~L~~L~L~~N 209 (306)
T 2z66_A 198 LSSLQVLNMSHN 209 (306)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEECCCC
Confidence 445555555444
No 65
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=61.29 E-value=2.7 Score=36.08 Aligned_cols=12 Identities=33% Similarity=0.246 Sum_probs=5.4
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|+.|+|++|
T Consensus 174 l~~L~~L~Ls~N 185 (605)
T 1m9s_A 174 LTKLQNLYLSKN 185 (605)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECcCC
Confidence 444444444443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=60.81 E-value=5.4 Score=30.45 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=13.4
Q ss_pred HhCCCCcEEeccCCCCCC
Q 038746 128 LRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 128 ~~Cp~L~~L~L~~C~~iT 145 (147)
..+++|++|+|++| +++
T Consensus 198 ~~l~~L~~L~L~~N-~l~ 214 (312)
T 1wwl_A 198 LKFPTLQVLALRNA-GME 214 (312)
T ss_dssp TSCTTCCEEECTTS-CCC
T ss_pred ccCCCCCEEECCCC-cCc
Confidence 56889999999987 454
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=60.53 E-value=14 Score=28.34 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=19.3
Q ss_pred cccHHHHHHHH---HhCCCCcEEeccCCCCCC
Q 038746 117 SLDDDALVLIS---LRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 117 ~ItD~~L~~ia---~~Cp~L~~L~L~~C~~iT 145 (147)
.+++..+..+. ..+++|++|+|++| +++
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~ 290 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRN-QLK 290 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCC-CCC
Confidence 35566555543 57899999999987 444
No 68
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=60.47 E-value=1.8 Score=30.91 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=23.6
Q ss_pred HhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
.+..+++|+.|+|+ ...++.-. ..+...+++|++|+|+++
T Consensus 71 ~~~~l~~L~~L~Ls----~n~l~~~~-~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 71 VFNKLTSLTYLNLS----TNQLQSLP-NGVFDKLTQLKELALNTN 110 (208)
T ss_dssp TTTTCTTCCEEECC----SSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred hcCCCCCcCEEECC----CCcCCccC-HhHhcCccCCCEEEcCCC
Confidence 34566788888887 22333111 011235788888888876
No 69
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=60.38 E-value=0.8 Score=35.36 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=5.2
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|++|+|+++
T Consensus 148 l~~L~~L~L~~N 159 (313)
T 1ogq_A 148 LPNLVGITFDGN 159 (313)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCeEECcCC
Confidence 444444444443
No 70
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=59.43 E-value=3.4 Score=35.40 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=22.2
Q ss_pred hcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iT 145 (147)
..+++|+.|+|+ ...+++- .....+++|+.|+|++| .++
T Consensus 128 ~~l~~L~~L~Ls----~N~l~~l---~~l~~l~~L~~L~Ls~N-~l~ 166 (605)
T 1m9s_A 128 VHLPQLESLYLG----NNKITDI---TVLSRLTKLDTLSLEDN-QIS 166 (605)
T ss_dssp GGCTTCSEEECC----SSCCCCC---GGGGSCTTCSEEECCSS-CCC
T ss_pred cCCCccCEEECC----CCccCCc---hhhcccCCCCEEECcCC-cCC
Confidence 445667777776 2334432 12235777888887776 344
No 71
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=59.19 E-value=1.1 Score=32.11 Aligned_cols=14 Identities=14% Similarity=0.000 Sum_probs=8.0
Q ss_pred HhCCCCcEEeccCC
Q 038746 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~Cp~L~~L~L~~C 141 (147)
..+++|+.|+|++|
T Consensus 90 ~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 90 AVADTLEELWISYN 103 (198)
T ss_dssp HHHHHCSEEEEEEE
T ss_pred hcCCcCCEEECcCC
Confidence 34456666666655
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.85 E-value=1.4 Score=36.36 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=18.2
Q ss_pred cCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 100 RFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 100 r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
.+++|+.|+|+ ...+++.....+...+++|+.|+|++|
T Consensus 142 ~l~~L~~L~Ls----~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 142 CRSRVQYLDLK----LNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp GGSSEEEEECT----TSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCCCCCEEECC----CCCCCCcChHHHhhhCCcccEEecCCC
Confidence 34556666665 233333222333334556666666555
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=58.78 E-value=0.87 Score=37.48 Aligned_cols=14 Identities=36% Similarity=0.524 Sum_probs=8.8
Q ss_pred HhCCCCcEEeccCC
Q 038746 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~Cp~L~~L~L~~C 141 (147)
..+++|+.|+|++|
T Consensus 467 ~~l~~L~~L~l~~n 480 (570)
T 2z63_A 467 TELRNLTFLDLSQC 480 (570)
T ss_dssp TTCTTCCEEECTTS
T ss_pred hcccCCCEEECCCC
Confidence 34666666666665
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=58.24 E-value=0.81 Score=33.58 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=8.3
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 103 ~l~~L~~L~l~~n 115 (239)
T 2xwt_C 103 ELPLLKFLGIFNT 115 (239)
T ss_dssp CCTTCCEEEEEEE
T ss_pred CCCCCCEEeCCCC
Confidence 4566666666665
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=58.03 E-value=1.8 Score=34.13 Aligned_cols=13 Identities=31% Similarity=0.166 Sum_probs=8.6
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 115 ~l~~L~~L~L~~n 127 (390)
T 3o6n_A 115 NVPLLTVLVLERN 127 (390)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 4666777777665
No 76
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=57.53 E-value=1.1 Score=37.35 Aligned_cols=10 Identities=30% Similarity=0.242 Sum_probs=4.6
Q ss_pred Ccccceecee
Q 038746 101 FDSVTKLALR 110 (147)
Q Consensus 101 ~~~L~~L~L~ 110 (147)
+++|+.|+|+
T Consensus 472 l~~L~~L~Ls 481 (606)
T 3vq2_A 472 TTNLTFLDLS 481 (606)
T ss_dssp CTTCCEEECT
T ss_pred CCCCCEEECC
Confidence 3444444444
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=57.42 E-value=4.3 Score=34.32 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=24.4
Q ss_pred HHHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 95 PSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 95 ~~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
...+..+++|+.|+|+ ...++.-.-..+ ..|++|++|+|++|
T Consensus 66 ~~~~~~l~~L~~L~L~----~n~l~~l~~~~~-~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 66 PELCQKLPMLKVLNLQ----HNELSQLSDKTF-AFCTNLTELHLMSN 107 (680)
T ss_dssp TTHHHHCTTCCEEECC----SSCCCCCCTTTT-TTCTTCSEEECCSS
T ss_pred HHHHhcccCcCEEECC----CCccCccChhhh-ccCCCCCEEECCCC
Confidence 3445667788888887 223331111112 35788888888877
No 78
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=56.80 E-value=4.4 Score=32.76 Aligned_cols=12 Identities=33% Similarity=0.276 Sum_probs=5.2
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 330 l~~L~~L~l~~n 341 (466)
T 1o6v_A 330 LTKLQRLFFYNN 341 (466)
T ss_dssp CTTCCEEECCSS
T ss_pred CccCCEeECCCC
Confidence 444444444443
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=55.69 E-value=13 Score=30.20 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=20.8
Q ss_pred hcCcccceeceeccCCCCcccH-HHHHHHHHhCCCCcEEeccCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDD-DALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD-~~L~~ia~~Cp~L~~L~L~~C 141 (147)
..+++|+.|+|+ ...+++ ..+......+++|+.|+|++|
T Consensus 345 ~~l~~L~~L~L~----~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 345 GHLTELETLILQ----MNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp CCCSSCCEEECC----SSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred ccCCCCCEEEcc----CCccCccccchHHHhhCCCCCEEECCCC
Confidence 445666666665 333443 122223345677777777765
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=54.54 E-value=2.6 Score=31.55 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=7.6
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 179 ~l~~L~~L~L~~N 191 (272)
T 3rfs_A 179 KLTQLKDLRLYQN 191 (272)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCccCCEEECCCC
Confidence 4556666666655
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=54.54 E-value=2.7 Score=34.31 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=22.3
Q ss_pred HHhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 96 SVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 96 ~l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
..+..+++|+.|+|+ ...+++ +... .+++|++|+|++|
T Consensus 63 ~~~~~l~~L~~L~Ls----~N~l~~--lp~~--~l~~L~~L~L~~N 100 (520)
T 2z7x_B 63 SVFKFNQELEYLDLS----HNKLVK--ISCH--PTVNLKHLDLSFN 100 (520)
T ss_dssp GGGTTCTTCCEEECC----SSCCCE--EECC--CCCCCSEEECCSS
T ss_pred HHhhcccCCCEEecC----CCceee--cCcc--ccCCccEEeccCC
Confidence 344556777777776 223331 1111 5778888888877
No 82
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=54.36 E-value=3.5 Score=31.57 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=6.5
Q ss_pred hcCcccceecee
Q 038746 99 SRFDSVTKLALR 110 (147)
Q Consensus 99 ~r~~~L~~L~L~ 110 (147)
..+++|+.|+|+
T Consensus 213 ~~l~~L~~L~Ls 224 (330)
T 1xku_A 213 KGLNNLAKLGLS 224 (330)
T ss_dssp TTCTTCCEEECC
T ss_pred cCCCCCCEEECC
Confidence 344555666555
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=54.30 E-value=4.8 Score=32.55 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=25.1
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITD 146 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iTD 146 (147)
...+++|+.|+|+ ...+++.. . ...+++|++|+|++| ++++
T Consensus 86 ~~~l~~L~~L~l~----~n~l~~~~--~-~~~l~~L~~L~L~~n-~l~~ 126 (466)
T 1o6v_A 86 LKNLTKLVDILMN----NNQIADIT--P-LANLTNLTGLTLFNN-QITD 126 (466)
T ss_dssp GTTCTTCCEEECC----SSCCCCCG--G-GTTCTTCCEEECCSS-CCCC
T ss_pred hhccccCCEEECC----CCccccCh--h-hcCCCCCCEEECCCC-CCCC
Confidence 4566777788777 22333221 1 346888888888887 4543
No 84
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=53.97 E-value=2.3 Score=34.19 Aligned_cols=12 Identities=42% Similarity=0.396 Sum_probs=6.3
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|++|+|+++
T Consensus 135 l~~L~~L~L~~N 146 (440)
T 3zyj_A 135 LSKLKELWLRNN 146 (440)
T ss_dssp CSSCCEEECCSC
T ss_pred cccCceeeCCCC
Confidence 455555555544
No 85
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=52.65 E-value=2.3 Score=32.70 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=7.2
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 100 ~l~~L~~L~L~~n 112 (332)
T 2ft3_A 100 PLRKLQKLYISKN 112 (332)
T ss_dssp TCTTCCEEECCSS
T ss_pred CcCCCCEEECCCC
Confidence 3555555555554
No 86
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=52.28 E-value=2.1 Score=34.55 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=23.2
Q ss_pred HhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
.+..+++|+.|+|+ ...++.-.-. +...+++|++|+|+++
T Consensus 75 ~~~~l~~L~~L~L~----~n~l~~~~~~-~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 75 AFNNLFNLRTLGLR----SNRLKLIPLG-VFTGLSNLTKLDISEN 114 (477)
T ss_dssp TTTTCTTCCEEECC----SSCCCSCCTT-SSTTCTTCCEEECTTS
T ss_pred hhhCCccCCEEECC----CCcCCccCcc-cccCCCCCCEEECCCC
Confidence 34566778888877 2233321111 1135788888888876
No 87
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=51.75 E-value=1.3 Score=36.82 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=7.8
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 471 ~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 471 NTTNLTFLDLSKC 483 (606)
T ss_dssp TCTTCCEEECTTS
T ss_pred cCCCCCEEECCCC
Confidence 4566666666665
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=51.65 E-value=4.2 Score=29.72 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=6.5
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|+.|+|+++
T Consensus 133 ~l~~L~~L~L~~N 145 (229)
T 3e6j_A 133 RLTHLTHLALDQN 145 (229)
T ss_dssp GCTTCSEEECCSS
T ss_pred cCCCCCEEECCCC
Confidence 4455555555543
No 89
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=51.47 E-value=1.2 Score=39.29 Aligned_cols=42 Identities=26% Similarity=0.209 Sum_probs=23.9
Q ss_pred HhhcCcccceeceeccCCCCcccHHHHHH-HHHhCCCCcEEeccCCC
Q 038746 97 VFSRFDSVTKLALRCDRKSISLDDDALVL-ISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~r~c~~ItD~~L~~-ia~~Cp~L~~L~L~~C~ 142 (147)
.+..+++|+.|+|+ ...+++..+.. ....+++|++|+|++|.
T Consensus 92 ~~~~l~~L~~L~Ls----~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 92 AFQGLFHLFELRLY----FCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp SSCSCSSCCCEECT----TCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred HccCCcccCEeeCc----CCCCCcccccCccccccCCCCEEECCCCc
Confidence 34556677777776 23344322211 12357888888888873
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=51.22 E-value=2.5 Score=31.20 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=23.0
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iT 145 (147)
+..+++|+.|+|+ ...++.-.. .....+++|++|+|+++ +++
T Consensus 79 ~~~l~~L~~L~L~----~n~l~~~~~-~~~~~l~~L~~L~L~~N-~l~ 120 (251)
T 3m19_A 79 FDDLTELGTLGLA----NNQLASLPL-GVFDHLTQLDKLYLGGN-QLK 120 (251)
T ss_dssp TTTCTTCCEEECT----TSCCCCCCT-TTTTTCTTCCEEECCSS-CCC
T ss_pred hccCCcCCEEECC----CCcccccCh-hHhcccCCCCEEEcCCC-cCC
Confidence 3455677777776 233331111 11235778888888876 443
No 91
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=50.48 E-value=2.8 Score=29.10 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=25.0
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCCCCCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREIT 145 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C~~iT 145 (147)
+..+++|+.|+|+ ...++.-. ......+++|+.|+|+++ +++
T Consensus 72 ~~~l~~L~~L~l~----~N~l~~~~-~~~~~~l~~L~~L~l~~N-~l~ 113 (177)
T 2o6r_A 72 FDKLTKLTILYLH----ENKLQSLP-NGVFDKLTQLKELALDTN-QLK 113 (177)
T ss_dssp TTTCTTCCEEECC----SSCCCCCC-TTTTTTCTTCCEEECCSS-CCS
T ss_pred ccCCCccCEEECC----CCCccccC-HHHhhCCcccCEEECcCC-cce
Confidence 4566788888887 33343111 111235788888888876 443
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=50.01 E-value=3.3 Score=30.15 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=22.5
Q ss_pred HhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
.+..+++|+.|+|+ ...|+.-.-..+ ..+++|+.|+|+++
T Consensus 100 ~~~~l~~L~~L~Ls----~N~l~~~~~~~~-~~l~~L~~L~L~~N 139 (220)
T 2v70_A 100 MFKGLESLKTLMLR----SNRITCVGNDSF-IGLSSVRLLSLYDN 139 (220)
T ss_dssp GGTTCSSCCEEECT----TSCCCCBCTTSS-TTCTTCSEEECTTS
T ss_pred HhcCCcCCCEEECC----CCcCCeECHhHc-CCCccCCEEECCCC
Confidence 34556777777776 223321110111 25788888888876
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=49.93 E-value=3 Score=31.16 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=8.4
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 179 ~l~~L~~L~L~~N 191 (270)
T 2o6q_A 179 KLTELKTLKLDNN 191 (270)
T ss_dssp TCTTCCEEECCSS
T ss_pred cCCCcCEEECCCC
Confidence 4566666766665
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=49.59 E-value=3.5 Score=30.00 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=22.2
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...|+.-.-.. ...+++|+.|+|+++
T Consensus 100 f~~l~~L~~L~L~----~N~l~~~~~~~-~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 100 FEGLFSLQLLLLN----ANKINCLRVDA-FQDLHNLNLLSLYDN 138 (220)
T ss_dssp TTTCTTCCEEECC----SSCCCCCCTTT-TTTCTTCCEEECCSS
T ss_pred ccCCCCCCEEECC----CCCCCEeCHHH-cCCCCCCCEEECCCC
Confidence 3456777777776 22333211111 225788888888876
No 95
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=49.48 E-value=3.5 Score=28.77 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=19.4
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...|+.-. ......+++|+.|+|++-
T Consensus 74 f~~l~~L~~L~L~----~N~l~~~~-~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 74 FDKLTQLTQLSLN----DNQLKSIP-RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTCTTCCEEECC----SSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred ccCCCCCCEEECC----CCccCEeC-HHHhcCCCCCCEEEeCCC
Confidence 3455667777776 22222100 011234677777777663
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=49.36 E-value=4.6 Score=30.98 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=8.5
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 262 ~l~~L~~L~l~~N 274 (332)
T 2ft3_A 262 DLKLLQVVYLHTN 274 (332)
T ss_dssp GCTTCCEEECCSS
T ss_pred cCccCCEEECCCC
Confidence 4666777776665
No 97
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=48.91 E-value=2.4 Score=32.74 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=6.0
Q ss_pred hCCCCcEEeccC
Q 038746 129 RCQKLTRLKLRG 140 (147)
Q Consensus 129 ~Cp~L~~L~L~~ 140 (147)
.+++|++|+|++
T Consensus 78 ~l~~L~~L~l~~ 89 (347)
T 2ifg_A 78 FTPRLSRLNLSF 89 (347)
T ss_dssp SCSCCCEEECCS
T ss_pred CCcCCCEEeCCC
Confidence 345555555554
No 98
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=48.11 E-value=17 Score=29.57 Aligned_cols=40 Identities=18% Similarity=0.049 Sum_probs=23.8
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHH--HHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLI--SLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~i--a~~Cp~L~~L~L~~C 141 (147)
...+++|+.|+|+ ...+++...... ...+++|+.|+|++|
T Consensus 330 ~~~l~~L~~L~Ls----~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 330 SQHLKSLEFLDLS----ENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp HHHCTTCCEEECC----SSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred HhcCccccEEEcc----CCccccccccchhhhhccccCcEEEccCC
Confidence 3456777777776 444565443322 235677777777776
No 99
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=47.57 E-value=6.4 Score=30.83 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=8.6
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 316 ~l~~L~~L~L~~N 328 (390)
T 3o6n_A 316 QFDRLENLYLDHN 328 (390)
T ss_dssp HHTTCSEEECCSS
T ss_pred ccCcCCEEECCCC
Confidence 4566777777665
No 100
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.57 E-value=3.4 Score=34.78 Aligned_cols=38 Identities=16% Similarity=0.012 Sum_probs=19.2
Q ss_pred hcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
..+++|+.|+|+ ...++.-.-. ....+++|+.|+|++|
T Consensus 96 ~~l~~L~~L~L~----~n~l~~~~~~-~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 96 AYAHTIQKLYMG----FNAIRYLPPH-VFQNVPLLTVLVLERN 133 (597)
T ss_dssp TTCTTCCEEECC----SSCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred cCCCCCCEEECC----CCcCCCCCHH-HHcCCCCCCEEEeeCC
Confidence 345566666665 2223321111 1135677777777776
No 101
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=45.52 E-value=3.3 Score=31.67 Aligned_cols=38 Identities=11% Similarity=-0.008 Sum_probs=21.4
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...++ .+-.-...+++|++|+|+++
T Consensus 236 ~~~l~~L~~L~L~----~N~l~--~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 236 LANTPHLRELHLN----NNKLV--KVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp GGGSTTCCEEECC----SSCCS--SCCTTTTTCSSCCEEECCSS
T ss_pred ccCCCCCCEEECC----CCcCc--cCChhhccCCCcCEEECCCC
Confidence 3456677777777 22333 11111235777777877776
No 102
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=45.03 E-value=16 Score=31.00 Aligned_cols=44 Identities=5% Similarity=0.009 Sum_probs=25.5
Q ss_pred HHHhhcCcccceeceeccCCCCcccH-HHHHHHHH-----hCCCCcEEeccCC
Q 038746 95 PSVFSRFDSVTKLALRCDRKSISLDD-DALVLISL-----RCQKLTRLKLRGC 141 (147)
Q Consensus 95 ~~l~~r~~~L~~L~L~c~r~c~~ItD-~~L~~ia~-----~Cp~L~~L~L~~C 141 (147)
+..+..+++|+.|+|+ ++..++. ..-..+.. .+++|++|+|++|
T Consensus 266 p~~l~~l~~L~~L~Ls---~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 266 PTFLKALPEMQLINVA---CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp CTTTTTCSSCCEEECT---TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred hHHHhcCCCCCEEECc---CCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 3344556778888887 3333665 22222322 3577888877776
No 103
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=44.94 E-value=7.5 Score=33.75 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=20.8
Q ss_pred hcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
..+++|+.|+|+ ...+++..-..+ ..+++|++|+|++|
T Consensus 220 ~~l~~L~~L~Ls----~n~l~~~~~~~l-~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 220 GDCSALQHLDIS----GNKLSGDFSRAI-STCTELKLLNISSN 257 (768)
T ss_dssp TTCCSCCEEECC----SSCCCSCHHHHT-TTCSSCCEEECCSS
T ss_pred ccCCCCCEEECc----CCcCCCcccHHH-hcCCCCCEEECCCC
Confidence 345566666665 333443333333 34777777777776
No 104
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=43.85 E-value=3.7 Score=35.76 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=5.7
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.|++|++|+|++|
T Consensus 176 ~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 176 GCGELKHLAISGN 188 (768)
T ss_dssp CCTTCCEEECCSS
T ss_pred cCCCCCEEECCCC
Confidence 3444444444443
No 105
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=43.64 E-value=4.2 Score=28.59 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=22.4
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...|+.-. ......+++|+.|+|++.
T Consensus 77 ~~~l~~L~~L~L~----~N~l~~l~-~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 77 FDKLTQLTQLDLN----DNHLKSIP-RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTCTTCCEEECC----SSCCCCCC-TTTTTTCTTCSEEECCSS
T ss_pred hCCcchhhEEECC----CCccceeC-HHHhccccCCCEEEeCCC
Confidence 4566778888887 23333100 011235788888888775
No 106
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=43.63 E-value=4 Score=29.18 Aligned_cols=39 Identities=23% Similarity=0.111 Sum_probs=23.0
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...|+.-.-.. ...+++|+.|+|+++
T Consensus 74 f~~l~~L~~L~Ls----~N~l~~i~~~~-f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 74 FSNMTQLLTLILS----YNRLRCIPPRT-FDGLKSLRLLSLHGN 112 (193)
T ss_dssp TTTCTTCCEEECC----SSCCCBCCTTT-TTTCTTCCEEECCSS
T ss_pred ccCCCCCCEEECC----CCccCEeCHHH-hCCCCCCCEEECCCC
Confidence 4556788888887 22232211111 135788999988886
No 107
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.48 E-value=3.1 Score=34.34 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=20.3
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...+++.. . ...+++|+.|+|++|
T Consensus 54 ~~~l~~L~~L~Ls----~N~l~~~~--~-l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 54 LAPFTKLELLNLS----SNVLYETL--D-LESLSTLRTLDLNNN 90 (487)
T ss_dssp GTTCTTCCEEECT----TSCCEEEE--E-CTTCTTCCEEECCSS
T ss_pred HhCCCCCCEEEee----CCCCCCCc--c-cccCCCCCEEEecCC
Confidence 4556677777776 22232110 0 235677777777776
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=43.40 E-value=4 Score=28.96 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=22.7
Q ss_pred HhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
.+..+++|+.|+|+ ...|+.-.-.. ...+++|++|+|+++
T Consensus 73 ~~~~l~~L~~L~Ls----~N~l~~~~~~~-~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 73 AFEGASHIQELQLG----ENKIKEISNKM-FLGLHQLKTLNLYDN 112 (192)
T ss_dssp TTTTCTTCCEEECC----SCCCCEECSSS-STTCTTCCEEECCSS
T ss_pred HcCCcccCCEEECC----CCcCCccCHHH-hcCCCCCCEEECCCC
Confidence 34556778888887 22332211111 124788888888876
No 109
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=42.84 E-value=3.6 Score=33.16 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=6.4
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 195 l~~L~~L~L~~n 206 (452)
T 3zyi_A 195 LFNLKYLNLGMC 206 (452)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEECCCC
Confidence 455555555554
No 110
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=42.81 E-value=3.2 Score=34.19 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=20.9
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...++.-.-. .-.++++|++|+|++|
T Consensus 96 f~~L~~L~~L~Ls----~N~l~~l~~~-~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 96 YQSLSHLSTLILT----GNPIQSLALG-AFSGLSSLQKLVAVET 134 (635)
T ss_dssp TTTCTTCCEEECT----TCCCCEECGG-GGTTCTTCCEEECTTS
T ss_pred hcCCCCCCEEEcc----CCcCCCCCHH-HhcCCCCCCEEECCCC
Confidence 4455667777776 2223211101 1235777888888776
No 111
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=42.25 E-value=21 Score=32.09 Aligned_cols=45 Identities=9% Similarity=0.105 Sum_probs=25.6
Q ss_pred hHHHhhcCcccceeceeccCCCCcccH----HHHHHHH---HhCCCCcEEeccCC
Q 038746 94 LPSVFSRFDSVTKLALRCDRKSISLDD----DALVLIS---LRCQKLTRLKLRGC 141 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~c~r~c~~ItD----~~L~~ia---~~Cp~L~~L~L~~C 141 (147)
++..+..+++|+.|+|+ ++..++. ..+..+. ..+++|+.|+|++|
T Consensus 507 iP~~l~~L~~L~~L~Ls---~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 507 LPDFLYDLPELQSLNIA---CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp CCGGGGGCSSCCEEECT---TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ChHHHhCCCCCCEEECc---CCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 33445566777788777 3332554 2333332 34567777777776
No 112
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=41.87 E-value=3.8 Score=32.89 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=8.1
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|++|
T Consensus 183 ~l~~L~~L~L~~n 195 (440)
T 3zyj_A 183 GLSNLRYLNLAMC 195 (440)
T ss_dssp TCSSCCEEECTTS
T ss_pred cccccCeecCCCC
Confidence 4566666666665
No 113
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=40.01 E-value=4 Score=32.89 Aligned_cols=12 Identities=42% Similarity=0.387 Sum_probs=6.5
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|++|+|+++
T Consensus 146 l~~L~~L~L~~N 157 (452)
T 3zyi_A 146 LSKLRELWLRNN 157 (452)
T ss_dssp CTTCCEEECCSC
T ss_pred cCCCCEEECCCC
Confidence 455555555554
No 114
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=39.90 E-value=4.6 Score=30.97 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=4.8
Q ss_pred CCcEEeccCC
Q 038746 132 KLTRLKLRGC 141 (147)
Q Consensus 132 ~L~~L~L~~C 141 (147)
+|++|+|+++
T Consensus 175 ~L~~L~L~~N 184 (313)
T 1ogq_A 175 LFTSMTISRN 184 (313)
T ss_dssp TCCEEECCSS
T ss_pred cCcEEECcCC
Confidence 4555555443
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=39.57 E-value=9.5 Score=31.11 Aligned_cols=13 Identities=31% Similarity=0.146 Sum_probs=8.3
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 104 ~l~~L~~L~L~~N 116 (457)
T 3bz5_A 104 PLTKLTYLNCDTN 116 (457)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCcCCEEECCCC
Confidence 4666666666665
No 116
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=39.36 E-value=6.1 Score=30.06 Aligned_cols=39 Identities=21% Similarity=0.088 Sum_probs=22.9
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
...+++|+.|+|+ ...++.-.- .....+++|++|+|+++
T Consensus 96 ~~~l~~L~~L~l~----~N~l~~l~~-~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 96 GQTLPALTVLDVS----FNRLTSLPL-GALRGLGELQELYLKGN 134 (290)
T ss_dssp TTTCTTCCEEECC----SSCCCCCCS-STTTTCTTCCEEECTTS
T ss_pred hccCCCCCEEECC----CCcCcccCH-HHHcCCCCCCEEECCCC
Confidence 3556778888887 333331110 11235788888888887
No 117
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=38.91 E-value=3.8 Score=34.03 Aligned_cols=40 Identities=18% Similarity=0.047 Sum_probs=22.3
Q ss_pred HhhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 97 VFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 97 l~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
.+..+++|++|+|+ ...++...-..+ ..+++|++|+|++|
T Consensus 76 ~~~~l~~L~~L~Ls----~n~l~~~~~~~~-~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 76 TFQSQHRLDTLVLT----ANPLIFMAETAL-SGPKALKHLFFIQT 115 (606)
T ss_dssp TTTTCTTCCEEECT----TCCCSEECTTTT-SSCTTCCEEECTTS
T ss_pred hccCccccCeeeCC----CCcccccChhhh-cccccccEeecccc
Confidence 34556777777776 222321111111 25778888888876
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=38.70 E-value=11 Score=31.85 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=7.3
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|+.|+|+++
T Consensus 506 ~l~~L~~L~Ls~N 518 (567)
T 1dce_A 506 NLPRLQELLLCNN 518 (567)
T ss_dssp TCSSCCEEECCSS
T ss_pred CCCCCcEEECCCC
Confidence 3555666666554
No 119
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=38.28 E-value=5.6 Score=30.73 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=10.7
Q ss_pred hHHHhhcCcccceecee
Q 038746 94 LPSVFSRFDSVTKLALR 110 (147)
Q Consensus 94 l~~l~~r~~~L~~L~L~ 110 (147)
+..+...+++|+.|+|+
T Consensus 188 l~~~~~~l~~L~~L~Ls 204 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLS 204 (267)
T ss_dssp GTTHHHHSTTCCEEECT
T ss_pred chhHHhhCCCCCEEECC
Confidence 33445567777777776
No 120
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.01 E-value=11 Score=31.70 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=9.4
Q ss_pred HhCCCCcEEeccCC
Q 038746 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~Cp~L~~L~L~~C 141 (147)
..+++|+.|+|++|
T Consensus 321 ~~l~~L~~L~L~~N 334 (597)
T 3oja_B 321 PQFDRLENLYLDHN 334 (597)
T ss_dssp HHHTTCSEEECCSS
T ss_pred ccCCCCCEEECCCC
Confidence 34677777777776
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=37.55 E-value=6.6 Score=34.28 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=8.1
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 291 ~l~~L~~L~L~~N 303 (727)
T 4b8c_D 291 SCFQLKYFYFFDN 303 (727)
T ss_dssp GGTTCSEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 4566666666665
No 122
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=35.48 E-value=6.2 Score=34.69 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=7.3
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 146 ~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 146 KLNSLKSIDFSSN 158 (844)
T ss_dssp TCSSCCEEEEESS
T ss_pred hCCCCCEEECCCC
Confidence 4555555555554
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=35.39 E-value=11 Score=31.80 Aligned_cols=38 Identities=24% Similarity=0.118 Sum_probs=21.6
Q ss_pred hhcCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...++ .+-.-...+++|+.|+|+++
T Consensus 459 ~~~l~~L~~L~Ls----~N~l~--~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 459 LEQLLLVTHLDLS----HNRLR--ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp GGGGTTCCEEECC----SSCCC--CCCGGGGGCTTCCEEECCSS
T ss_pred ccccccCcEeecC----ccccc--ccchhhhcCCCCCEEECCCC
Confidence 3445667777776 33343 11111235778888888776
No 124
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=33.70 E-value=17 Score=29.96 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=17.7
Q ss_pred hcCcccceeceeccCCCCcccH-HHHHHHHHhCCCCcEEeccCC
Q 038746 99 SRFDSVTKLALRCDRKSISLDD-DALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 99 ~r~~~L~~L~L~c~r~c~~ItD-~~L~~ia~~Cp~L~~L~L~~C 141 (147)
..+++|+.|+|+ ...++. ..+......+++|+.|+|+++
T Consensus 374 ~~l~~L~~L~L~----~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 374 STLKRLQTLILQ----RNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp CSCSSCCEEECC----SSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred cccCCCCEEECC----CCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 344556666665 223332 111111234566666666655
No 125
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=33.28 E-value=15 Score=29.45 Aligned_cols=12 Identities=33% Similarity=0.348 Sum_probs=5.6
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|+.|+|+++
T Consensus 175 l~~L~~L~l~~n 186 (477)
T 2id5_A 175 LHGLIVLRLRHL 186 (477)
T ss_dssp CTTCCEEEEESC
T ss_pred cCCCcEEeCCCC
Confidence 444444444443
No 126
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=32.24 E-value=16 Score=30.97 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=25.7
Q ss_pred CcccceeceeccCCCCcccHHHHHH--HHHhCCCCcEEeccCCC
Q 038746 101 FDSVTKLALRCDRKSISLDDDALVL--ISLRCQKLTRLKLRGCR 142 (147)
Q Consensus 101 ~~~L~~L~L~c~r~c~~ItD~~L~~--ia~~Cp~L~~L~L~~C~ 142 (147)
+++|+.|+|+ ...++ .+-. ....+++|++|+|++|.
T Consensus 304 l~~L~~L~L~----~n~l~--~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 304 GEKIQIIYIG----YNNLK--TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp GGTCCEEECC----SSCCS--SCCCHHHHTTCTTCCEEECCSCC
T ss_pred CCCCCEEECC----CCcCC--ccCchhhhccCCCCCEEeCcCCc
Confidence 4899999998 34455 2322 33468999999999873
No 127
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=32.13 E-value=6.3 Score=32.63 Aligned_cols=13 Identities=23% Similarity=0.100 Sum_probs=8.6
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 119 ~l~~L~~L~Ls~N 131 (562)
T 3a79_B 119 PMASLRHLDLSFN 131 (562)
T ss_dssp CCTTCSEEECCSS
T ss_pred ccccCCEEECCCC
Confidence 4666777776665
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=31.81 E-value=10 Score=29.59 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=19.5
Q ss_pred hhcCcccceeceeccCCCCcccH---HHHHHHHHhCCCCcEEeccCC
Q 038746 98 FSRFDSVTKLALRCDRKSISLDD---DALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 98 ~~r~~~L~~L~L~c~r~c~~ItD---~~L~~ia~~Cp~L~~L~L~~C 141 (147)
+..+++|+.|+|+ ...|+. ..+..+ ..+++|+.|+|+++
T Consensus 132 ~~~l~~L~~L~L~----~N~l~~l~~~~~~~~-~~l~~L~~L~L~~N 173 (361)
T 2xot_A 132 FEDMAQLQKLYLS----QNQISRFPVELIKDG-NKLPKLMLLDLSSN 173 (361)
T ss_dssp TTTCTTCCEEECC----SSCCCSCCGGGTC-----CTTCCEEECCSS
T ss_pred hCCcccCCEEECC----CCcCCeeCHHHhcCc-ccCCcCCEEECCCC
Confidence 3445666777766 222322 111111 34777888888775
No 129
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=30.83 E-value=5.9 Score=32.85 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=5.8
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 448 l~~L~~L~L~~n 459 (606)
T 3t6q_A 448 LPALQHLNLQGN 459 (606)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEECCCC
Confidence 444555554444
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=30.43 E-value=11 Score=32.92 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=7.4
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|+.|+|+++
T Consensus 268 ~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 268 NLSNLRVLDLSHN 280 (727)
T ss_dssp GGTTCCEEECTTS
T ss_pred CCCCCCEEeCcCC
Confidence 4555666666554
No 131
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=29.98 E-value=7.8 Score=31.83 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=7.1
Q ss_pred hCCCCcEEeccCC
Q 038746 129 RCQKLTRLKLRGC 141 (147)
Q Consensus 129 ~Cp~L~~L~L~~C 141 (147)
.+++|++|+|+++
T Consensus 171 ~l~~L~~L~L~~N 183 (635)
T 4g8a_A 171 NLTNLEHLDLSSN 183 (635)
T ss_dssp GCTTCCEEECCSS
T ss_pred cchhhhhhcccCc
Confidence 3555555555554
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=29.80 E-value=22 Score=27.11 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=30.6
Q ss_pred cCcccceeceeccCCCCcccHHHHHHHHHhCCCCcEEeccCC
Q 038746 100 RFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGC 141 (147)
Q Consensus 100 r~~~L~~L~L~c~r~c~~ItD~~L~~ia~~Cp~L~~L~L~~C 141 (147)
...+|++|.++ + .++...+..+...+++|+.|+|+++
T Consensus 23 ~~~~l~~L~l~---g--~i~~~~~~~l~~~l~~L~~LdLs~n 59 (329)
T 3sb4_A 23 EANSITHLTLT---G--KLNAEDFRHLRDEFPSLKVLDISNA 59 (329)
T ss_dssp HHHHCSEEEEE---E--EECHHHHHHHHHSCTTCCEEEEEEE
T ss_pred hhCceeEEEEe---c--cccHHHHHHHHHhhccCeEEecCcc
Confidence 45789999998 3 3677788888877999999999986
No 133
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=27.30 E-value=16 Score=29.66 Aligned_cols=12 Identities=25% Similarity=0.113 Sum_probs=5.8
Q ss_pred CCCCcEEeccCC
Q 038746 130 CQKLTRLKLRGC 141 (147)
Q Consensus 130 Cp~L~~L~L~~C 141 (147)
+++|++|+|++|
T Consensus 147 l~~L~~L~l~~n 158 (457)
T 3bz5_A 147 NTQLTELDCHLN 158 (457)
T ss_dssp CTTCCEEECTTC
T ss_pred CCcCCEEECCCC
Confidence 444444444444
No 134
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=20.52 E-value=46 Score=29.89 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=8.6
Q ss_pred HhCCCCcEEeccCC
Q 038746 128 LRCQKLTRLKLRGC 141 (147)
Q Consensus 128 ~~Cp~L~~L~L~~C 141 (147)
..+++|+.|+|++|
T Consensus 694 ~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 694 ATGSPISTIILSNN 707 (876)
T ss_dssp HTTCCCSEEECCSC
T ss_pred ccCCCCCEEECCCC
Confidence 45666666666665
Done!